locus-tag class description LPH48_00005 PF00308 Bacterial dnaA protein LPH48_00005 PF08299 Bacterial dnaA protein helix-turn-helix LPH48_00005 PF11638 DnaA N-terminal domain LPH48_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LPH48_00010 PF02767 DNA polymerase III beta subunit, central domain LPH48_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LPH48_00015 PF02463 RecF/RecN/SMC N terminal domain LPH48_00020 PF00204 DNA gyrase B LPH48_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LPH48_00020 PF18053 DNA gyrase B subunit insert domain LPH48_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_00020 PF01751 Toprim domain LPH48_00030 PF01435 Peptidase family M48 LPH48_00040 PF03544 Gram-negative bacterial TonB protein C-terminal LPH48_00045 PF01618 MotA/TolQ/ExbB proton channel family LPH48_00050 PF02472 Biopolymer transport protein ExbD/TolR LPH48_00055 PF02472 Biopolymer transport protein ExbD/TolR LPH48_00075 PF01218 Coproporphyrinogen III oxidase LPH48_00100 PF00793 DAHP synthetase I family LPH48_00105 PF07963 Prokaryotic N-terminal methylation motif LPH48_00105 PF00114 Pilin (bacterial filament) LPH48_00125 PF05567 Neisseria PilC beta-propeller domain LPH48_00130 PF07963 Prokaryotic N-terminal methylation motif LPH48_00130 PF00114 Pilin (bacterial filament) LPH48_00135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LPH48_00140 PF00155 Aminotransferase class I and II LPH48_00145 PF01741 Large-conductance mechanosensitive channel, MscL LPH48_00170 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LPH48_00180 PF02559 CarD-like/TRCF domain LPH48_00180 PF03461 TRCF domain LPH48_00180 PF17757 UvrB interaction domain LPH48_00180 PF00271 Helicase conserved C-terminal domain LPH48_00180 PF00270 DEAD/DEAH box helicase LPH48_00185 PF01220 Dehydroquinase class II LPH48_00190 PF00364 Biotin-requiring enzyme LPH48_00195 PF02785 Biotin carboxylase C-terminal domain LPH48_00195 PF00289 Biotin carboxylase, N-terminal domain LPH48_00195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH48_00200 PF13361 UvrD-like helicase C-terminal domain LPH48_00200 PF00580 UvrD/REP helicase N-terminal domain LPH48_00205 PF00970 Oxidoreductase FAD-binding domain LPH48_00205 PF00042 Globin LPH48_00205 PF00175 Oxidoreductase NAD-binding domain LPH48_00215 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LPH48_00225 PF02195 ParB-like nuclease domain LPH48_00225 PF06613 KorB C-terminal beta-barrel domain LPH48_00225 PF08535 KorB domain LPH48_00240 PF04055 Radical SAM superfamily LPH48_00240 PF06968 Biotin and Thiamin Synthesis associated domain LPH48_00245 PF01734 Patatin-like phospholipase LPH48_00250 PF01040 UbiA prenyltransferase family LPH48_00270 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LPH48_00305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH48_00305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH48_00315 PF00448 SRP54-type protein, GTPase domain LPH48_00315 PF02881 SRP54-type protein, helical bundle domain LPH48_00315 PF02978 Signal peptide binding domain LPH48_00335 PF13953 PapC C-terminal domain LPH48_00335 PF13954 PapC N-terminal domain LPH48_00335 PF00577 Outer membrane usher protein LPH48_00340 PF02753 Pili assembly chaperone PapD, C-terminal domain LPH48_00340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LPH48_00345 PF16970 Type-1 fimbrial protein, A LPH48_00350 PF02464 Competence-damaged protein LPH48_00355 PF00083 Sugar (and other) transporter LPH48_00360 PF01926 50S ribosome-binding GTPase LPH48_00360 PF13167 GTP-binding GTPase N-terminal LPH48_00360 PF16360 GTP-binding GTPase Middle Region LPH48_00365 PF17209 Hfq protein LPH48_00375 PF00809 Pterin binding enzyme LPH48_00380 PF17862 AAA+ lid domain LPH48_00380 PF01434 Peptidase family M41 LPH48_00380 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_00380 PF06480 FtsH Extracellular LPH48_00385 PF01728 FtsJ-like methyltransferase LPH48_00390 PF01985 CRS1 / YhbY (CRM) domain LPH48_00405 PF00920 Dehydratase family LPH48_00435 PF03279 Bacterial lipid A biosynthesis acyltransferase LPH48_00440 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LPH48_00460 PF00886 Ribosomal protein S16 LPH48_00465 PF05239 PRC-barrel domain LPH48_00465 PF01782 RimM N-terminal domain LPH48_00470 PF01746 tRNA (Guanine-1)-methyltransferase LPH48_00475 PF01245 Ribosomal protein L19 LPH48_00480 PF00557 Metallopeptidase family M24 LPH48_00490 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LPH48_00490 PF14602 Hexapeptide repeat of succinyl-transferase LPH48_00490 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_00495 PF03960 ArsC family LPH48_00500 PF01546 Peptidase family M20/M25/M40 LPH48_00500 PF07687 Peptidase dimerisation domain LPH48_00505 PF00733 Asparagine synthase LPH48_00505 PF13537 Glutamine amidotransferase domain LPH48_00515 PF03060 Nitronate monooxygenase LPH48_00525 PF00717 Peptidase S24-like LPH48_00525 PF01726 LexA DNA binding domain LPH48_00530 PF00154 recA bacterial DNA recombination protein LPH48_00535 PF02272 DHHA1 domain LPH48_00535 PF01411 tRNA synthetases class II (A) LPH48_00535 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH48_00540 PF02599 Global regulator protein family LPH48_00550 PF01432 Peptidase family M3 LPH48_00565 PF07731 Multicopper oxidase LPH48_00565 PF00394 Multicopper oxidase LPH48_00565 PF07732 Multicopper oxidase LPH48_00570 PF05275 Copper resistance protein B precursor (CopB) LPH48_00575 PF10458 Valyl tRNA synthetase tRNA binding arm LPH48_00575 PF00133 tRNA synthetases class I (I, L, M and V) LPH48_00575 PF08264 Anticodon-binding domain of tRNA LPH48_00595 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH48_00595 PF00883 Cytosol aminopeptidase family, catalytic domain LPH48_00615 PF01380 SIS domain LPH48_00630 PF17284 Spermidine synthase tetramerisation domain LPH48_00635 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LPH48_00635 PF17810 Arginine decarboxylase helical bundle domain LPH48_00635 PF17944 Arginine decarboxylase C-terminal helical extension LPH48_00640 PF00106 short chain dehydrogenase LPH48_00650 PF00750 tRNA synthetases class I (R) LPH48_00650 PF05746 DALR anticodon binding domain LPH48_00650 PF03485 Arginyl tRNA synthetase N terminal domain LPH48_00655 PF04002 RadC-like JAB domain LPH48_00660 PF04127 DNA / pantothenate metabolism flavoprotein LPH48_00660 PF02441 Flavoprotein LPH48_00665 PF00692 dUTPase LPH48_00670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH48_00670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH48_00670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH48_00670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH48_00680 PF00156 Phosphoribosyl transferase domain LPH48_00725 PF07690 Major Facilitator Superfamily LPH48_00730 PF03702 Anhydro-N-acetylmuramic acid kinase LPH48_00735 PF04225 Opacity-associated protein A LysM-like domain LPH48_00735 PF01551 Peptidase family M23 LPH48_00740 PF00579 tRNA synthetases class I (W and Y) LPH48_00770 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LPH48_00770 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LPH48_00800 PF00009 Elongation factor Tu GTP binding domain LPH48_00800 PF16658 Class II release factor RF3, C-terminal domain LPH48_00805 PF03006 Haemolysin-III related LPH48_00810 PF00535 Glycosyl transferase family 2 LPH48_00815 PF01026 TatD related DNase LPH48_00830 PF01597 Glycine cleavage H-protein LPH48_00835 PF08669 Glycine cleavage T-protein C-terminal barrel domain LPH48_00835 PF01571 Aminomethyltransferase folate-binding domain LPH48_00845 PF01145 SPFH domain / Band 7 family LPH48_00845 PF16200 C-terminal region of band_7 LPH48_00850 PF03819 MazG nucleotide pyrophosphohydrolase domain LPH48_00855 PF00459 Inositol monophosphatase family LPH48_00860 PF00293 NUDIX domain LPH48_00865 PF00202 Aminotransferase class-III LPH48_00870 PF04452 RNA methyltransferase LPH48_00880 PF00270 DEAD/DEAH box helicase LPH48_00880 PF00271 Helicase conserved C-terminal domain LPH48_00885 PF01242 6-pyruvoyl tetrahydropterin synthase LPH48_00910 PF03653 Uncharacterised protein family (UPF0093) LPH48_00915 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LPH48_00920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LPH48_00920 PF01336 OB-fold nucleic acid binding domain LPH48_00920 PF07733 Bacterial DNA polymerase III alpha NTPase domain LPH48_00920 PF02811 PHP domain LPH48_00920 PF14579 Helix-hairpin-helix motif LPH48_00925 PF01259 SAICAR synthetase LPH48_00930 PF00226 DnaJ domain LPH48_00930 PF05099 Tellurite resistance protein TerB LPH48_00935 PF00834 Ribulose-phosphate 3 epimerase family LPH48_00945 PF00425 chorismate binding enzyme LPH48_00945 PF04715 Anthranilate synthase component I, N terminal region LPH48_00950 PF00117 Glutamine amidotransferase class-I LPH48_00955 PF02885 Glycosyl transferase family, helical bundle domain LPH48_00955 PF00591 Glycosyl transferase family, a/b domain LPH48_00960 PF00218 Indole-3-glycerol phosphate synthase LPH48_00975 PF12849 PBP superfamily domain LPH48_00995 PF01321 Creatinase/Prolidase N-terminal domain LPH48_00995 PF00557 Metallopeptidase family M24 LPH48_01010 PF01702 Queuine tRNA-ribosyltransferase LPH48_01015 PF02699 Preprotein translocase subunit LPH48_01020 PF07549 SecD/SecF GG Motif LPH48_01020 PF13721 SecD export protein N-terminal TM region LPH48_01020 PF02355 Protein export membrane protein LPH48_01025 PF02355 Protein export membrane protein LPH48_01025 PF07549 SecD/SecF GG Motif LPH48_01035 PF01743 Poly A polymerase head domain LPH48_01035 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH48_01035 PF12626 Polymerase A arginine-rich C-terminus LPH48_01040 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LPH48_01045 PF02548 Ketopantoate hydroxymethyltransferase LPH48_01050 PF02569 Pantoate-beta-alanine ligase LPH48_01055 PF02261 Aspartate decarboxylase LPH48_01060 PF00342 Phosphoglucose isomerase LPH48_01070 PF02576 RimP N-terminal domain LPH48_01070 PF17384 RimP C-terminal SH3 domain LPH48_01075 PF13184 NusA-like KH domain LPH48_01075 PF08529 NusA N-terminal domain LPH48_01075 PF00575 S1 RNA binding domain LPH48_01080 PF11987 Translation-initiation factor 2 LPH48_01080 PF04760 Translation initiation factor IF-2, N-terminal region LPH48_01080 PF00009 Elongation factor Tu GTP binding domain LPH48_01080 PF08364 Bacterial translation initiation factor IF-2 associated region LPH48_01085 PF02033 Ribosome-binding factor A LPH48_01090 PF09157 Pseudouridine synthase II TruB, C-terminal LPH48_01090 PF16198 tRNA pseudouridylate synthase B C-terminal domain LPH48_01090 PF01509 TruB family pseudouridylate synthase (N terminal domain) LPH48_01095 PF00312 Ribosomal protein S15 LPH48_01100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LPH48_01100 PF01138 3' exoribonuclease family, domain 1 LPH48_01100 PF00575 S1 RNA binding domain LPH48_01100 PF00013 KH domain LPH48_01100 PF03725 3' exoribonuclease family, domain 2 LPH48_01105 PF01638 HxlR-like helix-turn-helix LPH48_01110 PF05368 NmrA-like family LPH48_01115 PF00873 AcrB/AcrD/AcrF family LPH48_01125 PF00999 Sodium/hydrogen exchanger family LPH48_01145 PF03880 DbpA RNA binding domain LPH48_01145 PF00270 DEAD/DEAH box helicase LPH48_01145 PF00271 Helicase conserved C-terminal domain LPH48_01150 PF00766 Electron transfer flavoprotein FAD-binding domain LPH48_01150 PF01012 Electron transfer flavoprotein domain LPH48_01155 PF01012 Electron transfer flavoprotein domain LPH48_01160 PF16363 GDP-mannose 4,6 dehydratase LPH48_01165 PF00483 Nucleotidyl transferase LPH48_01170 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LPH48_01175 PF04321 RmlD substrate binding domain LPH48_01180 PF01050 Mannose-6-phosphate isomerase LPH48_01180 PF00483 Nucleotidyl transferase LPH48_01185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH48_01185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH48_01185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH48_01185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH48_01235 PF00082 Subtilase family LPH48_01235 PF03797 Autotransporter beta-domain LPH48_01235 PF12951 Passenger-associated-transport-repeat LPH48_01240 PF03797 Autotransporter beta-domain LPH48_01240 PF12951 Passenger-associated-transport-repeat LPH48_01240 PF00082 Subtilase family LPH48_01245 PF06779 Uncharacterised MFS-type transporter YbfB LPH48_01250 PF07669 Eco57I restriction-modification methylase LPH48_01260 PF00365 Phosphofructokinase LPH48_01270 PF08245 Mur ligase middle domain LPH48_01270 PF01225 Mur ligase family, catalytic domain LPH48_01270 PF02875 Mur ligase family, glutamate ligase domain LPH48_01275 PF01569 PAP2 superfamily LPH48_01300 PF00892 EamA-like transporter family LPH48_01305 PF00883 Cytosol aminopeptidase family, catalytic domain LPH48_01305 PF02789 Cytosol aminopeptidase family, N-terminal domain LPH48_01315 PF01594 AI-2E family transporter LPH48_01335 PF00595 PDZ domain LPH48_01340 PF08338 Domain of unknown function (DUF1731) LPH48_01340 PF01370 NAD dependent epimerase/dehydratase family LPH48_01345 PF00501 AMP-binding enzyme LPH48_01345 PF13193 AMP-binding enzyme C-terminal domain LPH48_01350 PF00694 Aconitase C-terminal domain LPH48_01350 PF00330 Aconitase family (aconitate hydratase) LPH48_01365 PF00330 Aconitase family (aconitate hydratase) LPH48_01365 PF06434 Aconitate hydratase 2 N-terminus LPH48_01365 PF11791 Aconitate B N-terminal domain LPH48_01380 PF02384 N-6 DNA Methylase LPH48_01385 PF01420 Type I restriction modification DNA specificity domain LPH48_01400 PF18766 SWI2/SNF2 ATPase LPH48_01400 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH48_01400 PF11867 Domain of unknown function (DUF3387) LPH48_01420 PF00121 Triosephosphate isomerase LPH48_01435 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LPH48_01440 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LPH48_01445 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LPH48_01450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LPH48_01460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LPH48_01460 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LPH48_01460 PF10531 SLBB domain LPH48_01465 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LPH48_01465 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal LPH48_01465 PF00384 Molybdopterin oxidoreductase LPH48_01470 PF00146 NADH dehydrogenase LPH48_01475 PF12838 4Fe-4S dicluster domain LPH48_01480 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LPH48_01485 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LPH48_01490 PF00361 Proton-conducting membrane transporter LPH48_01490 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LPH48_01495 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus LPH48_01495 PF00361 Proton-conducting membrane transporter LPH48_01500 PF00361 Proton-conducting membrane transporter LPH48_01505 PF00106 short chain dehydrogenase LPH48_01510 PF03600 Citrate transporter LPH48_01520 PF00486 Transcriptional regulatory protein, C terminal LPH48_01520 PF00072 Response regulator receiver domain LPH48_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_01525 PF00512 His Kinase A (phospho-acceptor) domain LPH48_01525 PF08521 Two-component sensor kinase N-terminal LPH48_01535 PF00196 Bacterial regulatory proteins, luxR family LPH48_01535 PF00072 Response regulator receiver domain LPH48_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_01540 PF00512 His Kinase A (phospho-acceptor) domain LPH48_01540 PF01627 Hpt domain LPH48_01540 PF00072 Response regulator receiver domain LPH48_01540 PF00672 HAMP domain LPH48_01550 PF00375 Sodium:dicarboxylate symporter family LPH48_01555 PF00390 Malic enzyme, N-terminal domain LPH48_01555 PF03949 Malic enzyme, NAD binding domain LPH48_01555 PF01515 Phosphate acetyl/butaryl transferase LPH48_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_01560 PF00183 Hsp90 protein LPH48_01570 PF01467 Cytidylyltransferase-like LPH48_01580 PF00037 4Fe-4S binding domain LPH48_01590 PF00990 Diguanylate cyclase, GGDEF domain LPH48_01595 PF01551 Peptidase family M23 LPH48_01595 PF01476 LysM domain LPH48_01600 PF01979 Amidohydrolase family LPH48_01605 PF01809 Putative membrane protein insertion efficiency factor LPH48_01610 PF01258 Prokaryotic dksA/traR C4-type zinc finger LPH48_01635 PF02657 Fe-S metabolism associated domain LPH48_01640 PF01406 tRNA synthetases class I (C) catalytic domain LPH48_01640 PF09190 DALR domain LPH48_01650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH48_01650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH48_01655 PF00764 Arginosuccinate synthase LPH48_01660 PF01546 Peptidase family M20/M25/M40 LPH48_01660 PF07687 Peptidase dimerisation domain LPH48_01665 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase LPH48_01665 PF00696 Amino acid kinase family LPH48_01675 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH48_01680 PF00206 Lyase LPH48_01690 PF00696 Amino acid kinase family LPH48_01690 PF01472 PUA domain LPH48_01695 PF00171 Aldehyde dehydrogenase family LPH48_01705 PF02796 Helix-turn-helix domain of resolvase LPH48_01705 PF00239 Resolvase, N terminal domain LPH48_01730 PF00239 Resolvase, N terminal domain LPH48_01730 PF02796 Helix-turn-helix domain of resolvase LPH48_01745 PF13700 Domain of unknown function (DUF4158) LPH48_01745 PF01526 Tn3 transposase DDE domain LPH48_01775 PF03524 Conjugal transfer protein LPH48_01815 PF01593 Flavin containing amine oxidoreductase LPH48_01825 PF02627 Carboxymuconolactone decarboxylase family LPH48_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_01845 PF03466 LysR substrate binding domain LPH48_01850 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LPH48_01855 PF09386 Antitoxin ParD LPH48_01860 PF02796 Helix-turn-helix domain of resolvase LPH48_01860 PF00239 Resolvase, N terminal domain LPH48_01885 PF02796 Helix-turn-helix domain of resolvase LPH48_01885 PF00239 Resolvase, N terminal domain LPH48_01925 PF06594 Haemolysin-type calcium binding protein related domain LPH48_01925 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH48_01930 PF14437 MafB19-like deaminase LPH48_01935 PF01325 Iron dependent repressor, N-terminal DNA binding domain LPH48_01935 PF02742 Iron dependent repressor, metal binding and dimerisation domain LPH48_01940 PF01566 Natural resistance-associated macrophage protein LPH48_01955 PF04376 Arginine-tRNA-protein transferase, N terminus LPH48_01955 PF04377 Arginine-tRNA-protein transferase, C terminus LPH48_01990 PF12951 Passenger-associated-transport-repeat LPH48_01990 PF00082 Subtilase family LPH48_01990 PF03797 Autotransporter beta-domain LPH48_02015 PF01553 Acyltransferase LPH48_02030 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LPH48_02030 PF05221 S-adenosyl-L-homocysteine hydrolase LPH48_02045 PF01351 Ribonuclease HII LPH48_02050 PF02684 Lipid-A-disaccharide synthetase LPH48_02055 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_02055 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LPH48_02060 PF07977 FabA-like domain LPH48_02065 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LPH48_02065 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_02070 PF01103 Surface antigen LPH48_02070 PF07244 Surface antigen variable number repeat LPH48_02075 PF02163 Peptidase family M50 LPH48_02075 PF17820 PDZ domain LPH48_02080 PF13288 DXP reductoisomerase C-terminal domain LPH48_02080 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LPH48_02080 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LPH48_02090 PF01255 Putative undecaprenyl diphosphate synthase LPH48_02095 PF01765 Ribosome recycling factor LPH48_02125 PF04305 Protein of unknown function (DUF455) LPH48_02130 PF00696 Amino acid kinase family LPH48_02205 PF01081 KDPG and KHG aldolase LPH48_02210 PF00920 Dehydratase family LPH48_02215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LPH48_02220 PF02685 Glucokinase LPH48_02225 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LPH48_02225 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LPH48_02230 PF17912 MalK OB fold domain LPH48_02230 PF00005 ABC transporter LPH48_02245 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH48_02250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LPH48_02255 PF02910 Fumarate reductase flavoprotein C-term LPH48_02255 PF00890 FAD binding domain LPH48_02260 PF13237 4Fe-4S dicluster domain LPH48_02260 PF13085 2Fe-2S iron-sulfur cluster binding domain LPH48_02265 PF03937 Flavinator of succinate dehydrogenase LPH48_02275 PF12704 MacB-like periplasmic core domain LPH48_02275 PF02687 FtsX-like permease family LPH48_02280 PF00005 ABC transporter LPH48_02285 PF03772 Competence protein LPH48_02285 PF00753 Metallo-beta-lactamase superfamily LPH48_02300 PF00664 ABC transporter transmembrane region LPH48_02300 PF00005 ABC transporter LPH48_02305 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LPH48_02310 PF01883 Iron-sulfur cluster assembly protein LPH48_02310 PF10609 NUBPL iron-transfer P-loop NTPase LPH48_02325 PF13091 PLD-like domain LPH48_02350 PF03358 NADPH-dependent FMN reductase LPH48_02355 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LPH48_02355 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LPH48_02370 PF01300 Telomere recombination LPH48_02375 PF01751 Toprim domain LPH48_02375 PF13368 Topoisomerase C-terminal repeat LPH48_02375 PF01131 DNA topoisomerase LPH48_02385 PF04361 Protein of unknown function (DUF494) LPH48_02390 PF17782 DprA winged helix domain LPH48_02390 PF02481 DNA recombination-mediator protein A LPH48_02400 PF01327 Polypeptide deformylase LPH48_02405 PF00551 Formyl transferase LPH48_02405 PF02911 Formyl transferase, C-terminal domain LPH48_02410 PF01029 NusB family LPH48_02410 PF01189 16S rRNA methyltransferase RsmB/F LPH48_02415 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LPH48_02430 PF00114 Pilin (bacterial filament) LPH48_02430 PF07963 Prokaryotic N-terminal methylation motif LPH48_02550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH48_02550 PF01612 3'-5' exonuclease LPH48_02550 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH48_02550 PF00476 DNA polymerase family A LPH48_02555 PF05173 Dihydrodipicolinate reductase, C-terminus LPH48_02555 PF01113 Dihydrodipicolinate reductase, N-terminus LPH48_02560 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LPH48_02560 PF00117 Glutamine amidotransferase class-I LPH48_02565 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LPH48_02565 PF02142 MGS-like domain LPH48_02565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LPH48_02570 PF03449 Transcription elongation factor, N-terminal LPH48_02570 PF01272 Transcription elongation factor, GreA/GreB, C-term LPH48_02580 PF02272 DHHA1 domain LPH48_02580 PF01368 DHH family LPH48_02580 PF17768 RecJ OB domain LPH48_02590 PF00152 tRNA synthetases class II (D, K and N) LPH48_02590 PF01336 OB-fold nucleic acid binding domain LPH48_02595 PF00072 Response regulator receiver domain LPH48_02600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_02600 PF00512 His Kinase A (phospho-acceptor) domain LPH48_02600 PF01627 Hpt domain LPH48_02600 PF00072 Response regulator receiver domain LPH48_02605 PF00378 Enoyl-CoA hydratase/isomerase LPH48_02610 PF00696 Amino acid kinase family LPH48_02610 PF01842 ACT domain LPH48_02620 PF08245 Mur ligase middle domain LPH48_02640 PF00293 NUDIX domain LPH48_02650 PF02219 Methylenetetrahydrofolate reductase LPH48_02660 PF02545 Maf-like protein LPH48_02665 PF10150 Ribonuclease E/G family LPH48_02665 PF00575 S1 RNA binding domain LPH48_02675 PF01523 Putative modulator of DNA gyrase LPH48_02680 PF04751 Protein of unknown function (DUF615) LPH48_02685 PF01523 Putative modulator of DNA gyrase LPH48_02695 PF17761 DUF1016 N-terminal domain LPH48_02695 PF06250 YhcG PDDEXK nuclease domain LPH48_02715 PF03466 LysR substrate binding domain LPH48_02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_02720 PF03358 NADPH-dependent FMN reductase LPH48_02730 PF00107 Zinc-binding dehydrogenase LPH48_02730 PF08240 Alcohol dehydrogenase GroES-like domain LPH48_02745 PF00248 Aldo/keto reductase family LPH48_02760 PF14602 Hexapeptide repeat of succinyl-transferase LPH48_02760 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_02760 PF12804 MobA-like NTP transferase domain LPH48_02770 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LPH48_02770 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LPH48_02775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH48_02775 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH48_02780 PF00231 ATP synthase LPH48_02785 PF02874 ATP synthase alpha/beta family, beta-barrel domain LPH48_02785 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH48_02785 PF00306 ATP synthase alpha/beta chain, C terminal domain LPH48_02790 PF00213 ATP synthase delta (OSCP) subunit LPH48_02795 PF00430 ATP synthase B/B' CF(0) LPH48_02800 PF00137 ATP synthase subunit C LPH48_02805 PF00119 ATP synthase A chain LPH48_02815 PF00338 Ribosomal protein S10p/S20e LPH48_02820 PF00297 Ribosomal protein L3 LPH48_02825 PF00573 Ribosomal protein L4/L1 family LPH48_02830 PF00276 Ribosomal protein L23 LPH48_02835 PF03947 Ribosomal Proteins L2, C-terminal domain LPH48_02835 PF00181 Ribosomal Proteins L2, RNA binding domain LPH48_02840 PF00203 Ribosomal protein S19 LPH48_02845 PF00237 Ribosomal protein L22p/L17e LPH48_02850 PF00189 Ribosomal protein S3, C-terminal domain LPH48_02850 PF07650 KH domain LPH48_02855 PF00252 Ribosomal protein L16p/L10e LPH48_02860 PF00831 Ribosomal L29 protein LPH48_02865 PF00366 Ribosomal protein S17 LPH48_02870 PF00238 Ribosomal protein L14p/L23e LPH48_02875 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LPH48_02875 PF00467 KOW motif LPH48_02880 PF00673 ribosomal L5P family C-terminus LPH48_02880 PF00281 Ribosomal protein L5 LPH48_02885 PF00253 Ribosomal protein S14p/S29e LPH48_02890 PF00410 Ribosomal protein S8 LPH48_02895 PF00347 Ribosomal protein L6 LPH48_02900 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LPH48_02905 PF03719 Ribosomal protein S5, C-terminal domain LPH48_02905 PF00333 Ribosomal protein S5, N-terminal domain LPH48_02910 PF00327 Ribosomal protein L30p/L7e LPH48_02915 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LPH48_02920 PF00344 SecY translocase LPH48_02925 PF00416 Ribosomal protein S13/S18 LPH48_02930 PF00411 Ribosomal protein S11 LPH48_02935 PF01479 S4 domain LPH48_02935 PF00163 Ribosomal protein S4/S9 N-terminal domain LPH48_02940 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LPH48_02940 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LPH48_02940 PF01000 RNA polymerase Rpb3/RpoA insert domain LPH48_02945 PF01196 Ribosomal protein L17 LPH48_02950 PF04380 Membrane fusogenic activity LPH48_02955 PF01078 Magnesium chelatase, subunit ChlI LPH48_02955 PF13335 Magnesium chelatase, subunit ChlI C-terminal LPH48_02960 PF00561 alpha/beta hydrolase fold LPH48_02975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH48_02975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH48_02975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH48_02990 PF05697 Bacterial trigger factor protein (TF) LPH48_02990 PF05698 Bacterial trigger factor protein (TF) C-terminus LPH48_02995 PF00574 Clp protease LPH48_03000 PF06689 ClpX C4-type zinc finger LPH48_03000 PF10431 C-terminal, D2-small domain, of ClpB protein LPH48_03000 PF07724 AAA domain (Cdc48 subfamily) LPH48_03005 PF02190 ATP-dependent protease La (LON) substrate-binding domain LPH48_03005 PF05362 Lon protease (S16) C-terminal proteolytic domain LPH48_03005 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_03010 PF00216 Bacterial DNA-binding protein LPH48_03035 PF00317 Ribonucleotide reductase, all-alpha domain LPH48_03035 PF03477 ATP cone domain LPH48_03035 PF02867 Ribonucleotide reductase, barrel domain LPH48_03040 PF00268 Ribonucleotide reductase, small chain LPH48_03070 PF01479 S4 domain LPH48_03070 PF00849 RNA pseudouridylate synthase LPH48_03075 PF13419 Haloacid dehalogenase-like hydrolase LPH48_03085 PF00830 Ribosomal L28 family LPH48_03090 PF00471 Ribosomal protein L33 LPH48_03095 PF13396 Phospholipase_D-nuclease N-terminal LPH48_03095 PF13091 PLD-like domain LPH48_03110 PF07963 Prokaryotic N-terminal methylation motif LPH48_03110 PF00114 Pilin (bacterial filament) LPH48_03130 PF01612 3'-5' exonuclease LPH48_03130 PF00476 DNA polymerase family A LPH48_03130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH48_03130 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH48_03150 PF00959 Phage lysozyme LPH48_03170 PF01555 DNA methylase LPH48_03190 PF00043 Glutathione S-transferase, C-terminal domain LPH48_03190 PF02798 Glutathione S-transferase, N-terminal domain LPH48_03195 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LPH48_03195 PF00056 lactate/malate dehydrogenase, NAD binding domain LPH48_03200 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LPH48_03205 PF00679 Elongation factor G C-terminus LPH48_03205 PF03144 Elongation factor Tu domain 2 LPH48_03205 PF00009 Elongation factor Tu GTP binding domain LPH48_03220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH48_03220 PF00529 HlyD membrane-fusion protein of T1SS LPH48_03245 PF03412 Peptidase C39 family LPH48_03245 PF00664 ABC transporter transmembrane region LPH48_03245 PF00005 ABC transporter LPH48_03250 PF01061 ABC-2 type transporter LPH48_03255 PF00005 ABC transporter LPH48_03260 PF05567 Neisseria PilC beta-propeller domain LPH48_03275 PF00270 DEAD/DEAH box helicase LPH48_03275 PF04408 Helicase associated domain (HA2) LPH48_03275 PF00271 Helicase conserved C-terminal domain LPH48_03275 PF08482 ATP-dependent helicase C-terminal LPH48_03285 PF13185 GAF domain LPH48_03290 PF01103 Surface antigen LPH48_03290 PF17243 POTRA domain TamA domain 1 LPH48_03295 PF04357 TamB, inner membrane protein subunit of TAM complex LPH48_03310 PF00285 Citrate synthase, C-terminal domain LPH48_03315 PF00694 Aconitase C-terminal domain LPH48_03315 PF00330 Aconitase family (aconitate hydratase) LPH48_03320 PF04303 PrpF protein LPH48_03340 PF17962 Bacterial macroglobulin domain 6 LPH48_03340 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LPH48_03340 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LPH48_03340 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LPH48_03340 PF07703 Alpha-2-macroglobulin bait region domain LPH48_03340 PF00207 Alpha-2-macroglobulin family LPH48_03340 PF01835 MG2 domain LPH48_03340 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LPH48_03345 PF02583 Metal-sensitive transcriptional repressor LPH48_03350 PF03824 High-affinity nickel-transport protein LPH48_03355 PF07859 alpha/beta hydrolase fold LPH48_03360 PF12833 Helix-turn-helix domain LPH48_03360 PF12852 Cupin LPH48_03375 PF16485 Protealysin propeptide LPH48_03375 PF02868 Thermolysin metallopeptidase, alpha-helical domain LPH48_03375 PF01447 Thermolysin metallopeptidase, catalytic domain LPH48_03380 PF00929 Exonuclease LPH48_03385 PF05552 Conserved TM helix LPH48_03385 PF00924 Mechanosensitive ion channel LPH48_03390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LPH48_03390 PF02896 PEP-utilising enzyme, TIM barrel domain LPH48_03390 PF00391 PEP-utilising enzyme, mobile domain LPH48_03395 PF03618 Kinase/pyrophosphorylase LPH48_03415 PF04286 Protein of unknown function (DUF445) LPH48_03430 PF04359 Protein of unknown function (DUF493) LPH48_03435 PF03099 Biotin/lipoate A/B protein ligase family LPH48_03440 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LPH48_03440 PF04055 Radical SAM superfamily LPH48_03470 PF00571 CBS domain LPH48_03470 PF03471 Transporter associated domain LPH48_03470 PF01595 Cyclin M transmembrane N-terminal domain LPH48_03485 PF00204 DNA gyrase B LPH48_03485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_03485 PF01751 Toprim domain LPH48_03485 PF00986 DNA gyrase B subunit, carboxyl terminus LPH48_03495 PF06418 CTP synthase N-terminus LPH48_03495 PF00117 Glutamine amidotransferase class-I LPH48_03500 PF00793 DAHP synthetase I family LPH48_03505 PF00113 Enolase, C-terminal TIM barrel domain LPH48_03505 PF03952 Enolase, N-terminal domain LPH48_03510 PF04977 Septum formation initiator LPH48_03515 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LPH48_03520 PF02542 YgbB family LPH48_03525 PF01713 Smr domain LPH48_03550 PF02470 MlaD protein LPH48_03550 PF03886 ABC-type transport auxiliary lipoprotein component LPH48_03555 PF00005 ABC transporter LPH48_03560 PF02405 Permease MlaE LPH48_03635 PF04093 rod shape-determining protein MreD LPH48_03640 PF00905 Penicillin binding protein transpeptidase domain LPH48_03640 PF03717 Penicillin-binding Protein dimerisation domain LPH48_03645 PF01098 Cell cycle protein LPH48_03650 PF02547 Queuosine biosynthesis protein LPH48_03655 PF04607 Region found in RelA / SpoT proteins LPH48_03655 PF02824 TGS domain LPH48_03655 PF13291 ACT domain LPH48_03670 PF03776 Septum formation topological specificity factor MinE LPH48_03675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LPH48_03680 PF05209 Septum formation inhibitor MinC, N-terminal domain LPH48_03680 PF03775 Septum formation inhibitor MinC, C-terminal domain LPH48_03700 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH48_03710 PF01292 Prokaryotic cytochrome b561 LPH48_03715 PF04264 YceI-like domain LPH48_03720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_03720 PF00512 His Kinase A (phospho-acceptor) domain LPH48_03720 PF09308 LuxQ, periplasmic LPH48_03720 PF00072 Response regulator receiver domain LPH48_03730 PF01208 Uroporphyrinogen decarboxylase (URO-D) LPH48_03735 PF01761 3-dehydroquinate synthase LPH48_03740 PF01202 Shikimate kinase LPH48_03745 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LPH48_03745 PF01243 Pyridoxamine 5'-phosphate oxidase LPH48_03755 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH48_03755 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LPH48_03765 PF03932 CutC family LPH48_03785 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_03790 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_03795 PF12857 TOBE-like domain LPH48_03795 PF00005 ABC transporter LPH48_03835 PF01381 Helix-turn-helix LPH48_03905 PF10065 Uncharacterized conserved protein (DUF2303) LPH48_03930 PF04545 Sigma-70, region 4 LPH48_03930 PF04539 Sigma-70 region 3 LPH48_03930 PF04542 Sigma-70 region 2 LPH48_03930 PF00140 Sigma-70 factor, region 1.2 LPH48_03930 PF03979 Sigma-70 factor, region 1.1 LPH48_03930 PF04546 Sigma-70, non-essential region LPH48_03940 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH48_03940 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH48_03950 PF02321 Outer membrane efflux protein LPH48_03955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH48_03955 PF00529 HlyD membrane-fusion protein of T1SS LPH48_03960 PF07690 Major Facilitator Superfamily LPH48_03965 PF12697 Alpha/beta hydrolase family LPH48_03970 PF00155 Aminotransferase class I and II LPH48_03980 PF01040 UbiA prenyltransferase family LPH48_03985 PF00753 Metallo-beta-lactamase superfamily LPH48_03990 PF12627 Probable RNA and SrmB- binding site of polymerase A LPH48_03990 PF01743 Poly A polymerase head domain LPH48_03990 PF01966 HD domain LPH48_03995 PF01464 Transglycosylase SLT domain LPH48_03995 PF14718 Soluble lytic murein transglycosylase L domain LPH48_04005 PF02666 Phosphatidylserine decarboxylase LPH48_04060 PF00456 Transketolase, thiamine diphosphate binding domain LPH48_04060 PF17831 Pyruvate dehydrogenase E1 component middle domain LPH48_04065 PF00698 Acyl transferase domain LPH48_04075 PF00550 Phosphopantetheine attachment site LPH48_04080 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH48_04080 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH48_04085 PF00425 chorismate binding enzyme LPH48_04085 PF04715 Anthranilate synthase component I, N terminal region LPH48_04090 PF02618 YceG-like family LPH48_04095 PF09115 DNA polymerase III, delta subunit, C terminal LPH48_04115 PF00459 Inositol monophosphatase family LPH48_04120 PF00588 SpoU rRNA Methylase family LPH48_04125 PF04055 Radical SAM superfamily LPH48_04130 PF08207 Elongation factor P (EF-P) KOW-like domain LPH48_04130 PF09285 Elongation factor P, C-terminal LPH48_04130 PF01132 Elongation factor P (EF-P) OB domain LPH48_04135 PF01979 Amidohydrolase family LPH48_04145 PF13419 Haloacid dehalogenase-like hydrolase LPH48_04155 PF00561 alpha/beta hydrolase fold LPH48_04160 PF08534 Redoxin LPH48_04190 PF00155 Aminotransferase class I and II LPH48_04195 PF00795 Carbon-nitrogen hydrolase LPH48_04205 PF00849 RNA pseudouridylate synthase LPH48_04205 PF01479 S4 domain LPH48_04210 PF04079 Segregation and condensation complex subunit ScpB LPH48_04215 PF02616 Segregation and condensation protein ScpA LPH48_04245 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_04250 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_04265 PF00795 Carbon-nitrogen hydrolase LPH48_04270 PF04371 Porphyromonas-type peptidyl-arginine deiminase LPH48_04280 PF00444 Ribosomal protein L36 LPH48_04285 PF02224 Cytidylate kinase LPH48_04290 PF00575 S1 RNA binding domain LPH48_04295 PF00216 Bacterial DNA-binding protein LPH48_04305 PF18073 Rubredoxin metal binding domain LPH48_04310 PF00953 Glycosyl transferase family 4 LPH48_04315 PF02719 Polysaccharide biosynthesis protein LPH48_04320 PF00483 Nucleotidyl transferase LPH48_04325 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LPH48_04325 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LPH48_04330 PF00478 IMP dehydrogenase / GMP reductase domain LPH48_04330 PF00571 CBS domain LPH48_04335 PF02540 NAD synthase LPH48_04335 PF00958 GMP synthase C terminal domain LPH48_04335 PF00117 Glutamine amidotransferase class-I LPH48_04385 PF09571 XcyI restriction endonuclease LPH48_04400 PF00005 ABC transporter LPH48_04400 PF17760 UvrA interaction domain LPH48_04400 PF17755 UvrA DNA-binding domain LPH48_04405 PF00829 Ribosomal prokaryotic L21 protein LPH48_04410 PF01016 Ribosomal L27 protein LPH48_04415 PF01926 50S ribosome-binding GTPase LPH48_04415 PF01018 GTP1/OBG LPH48_04420 PF01649 Ribosomal protein S20 LPH48_04425 PF03023 Lipid II flippase MurJ LPH48_04430 PF01687 Riboflavin kinase LPH48_04430 PF06574 FAD synthetase LPH48_04435 PF06827 Zinc finger found in FPG and IleRS LPH48_04435 PF00133 tRNA synthetases class I (I, L, M and V) LPH48_04435 PF08264 Anticodon-binding domain of tRNA LPH48_04440 PF01252 Signal peptidase (SPase) II LPH48_04445 PF02401 LytB protein LPH48_04515 PF13087 AAA domain LPH48_04515 PF13091 PLD-like domain LPH48_04520 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH48_04520 PF06594 Haemolysin-type calcium binding protein related domain LPH48_04585 PF00664 ABC transporter transmembrane region LPH48_04585 PF00005 ABC transporter LPH48_04585 PF03412 Peptidase C39 family LPH48_04590 PF00155 Aminotransferase class I and II LPH48_04595 PF01522 Polysaccharide deacetylase LPH48_04600 PF00462 Glutaredoxin LPH48_04610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_04610 PF03466 LysR substrate binding domain LPH48_04620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LPH48_04630 PF00857 Isochorismatase family LPH48_04640 PF08240 Alcohol dehydrogenase GroES-like domain LPH48_04640 PF00107 Zinc-binding dehydrogenase LPH48_04645 PF08240 Alcohol dehydrogenase GroES-like domain LPH48_04645 PF00107 Zinc-binding dehydrogenase LPH48_04665 PF00873 AcrB/AcrD/AcrF family LPH48_04670 PF00873 AcrB/AcrD/AcrF family LPH48_04675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH48_04680 PF14489 QueF-like protein LPH48_04680 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LPH48_04695 PF00330 Aconitase family (aconitate hydratase) LPH48_04700 PF00694 Aconitase C-terminal domain LPH48_04705 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH48_04720 PF02397 Bacterial sugar transferase LPH48_04735 PF13439 Glycosyltransferase Family 4 LPH48_04735 PF00534 Glycosyl transferases group 1 LPH48_04745 PF01943 Polysaccharide biosynthesis protein LPH48_04760 PF00486 Transcriptional regulatory protein, C terminal LPH48_04760 PF00072 Response regulator receiver domain LPH48_04765 PF05958 tRNA (Uracil-5-)-methyltransferase LPH48_04770 PF01928 CYTH domain LPH48_04775 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH48_04780 PF00156 Phosphoribosyl transferase domain LPH48_04785 PF01048 Phosphorylase superfamily LPH48_04790 PF00313 'Cold-shock' DNA-binding domain LPH48_04800 PF01668 SmpB protein LPH48_04810 PF03658 RnfH family Ubiquitin LPH48_04815 PF04355 SmpA / OmlA family LPH48_04820 PF01475 Ferric uptake regulator family LPH48_04825 PF02463 RecF/RecN/SMC N terminal domain LPH48_04830 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding LPH48_04830 PF01628 HrcA protein C terminal domain LPH48_04835 PF01025 GrpE LPH48_04840 PF00012 Hsp70 protein LPH48_04845 PF01556 DnaJ C terminal domain LPH48_04845 PF00684 DnaJ central domain LPH48_04845 PF00226 DnaJ domain LPH48_04855 PF00486 Transcriptional regulatory protein, C terminal LPH48_04855 PF00072 Response regulator receiver domain LPH48_04860 PF01219 Prokaryotic diacylglycerol kinase LPH48_04865 PF01790 Prolipoprotein diacylglyceryl transferase LPH48_04870 PF00303 Thymidylate synthase LPH48_04875 PF00186 Dihydrofolate reductase LPH48_04880 PF13700 Domain of unknown function (DUF4158) LPH48_04880 PF01526 Tn3 transposase DDE domain LPH48_04890 PF00072 Response regulator receiver domain LPH48_04890 PF00486 Transcriptional regulatory protein, C terminal LPH48_04895 PF00512 His Kinase A (phospho-acceptor) domain LPH48_04895 PF13492 GAF domain LPH48_04895 PF02702 Osmosensitive K+ channel His kinase sensor domain LPH48_04895 PF13493 Domain of unknown function (DUF4118) LPH48_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_04900 PF02669 K+-transporting ATPase, c chain LPH48_04910 PF03814 Potassium-transporting ATPase A subunit LPH48_04925 PF00149 Calcineurin-like phosphoesterase LPH48_04930 PF04379 ApaG domain LPH48_04935 PF00398 Ribosomal RNA adenine dimethylase LPH48_04940 PF00929 Exonuclease LPH48_04945 PF01895 PhoU domain LPH48_04950 PF00005 ABC transporter LPH48_04955 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_04960 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_04965 PF12849 PBP superfamily domain LPH48_04970 PF00999 Sodium/hydrogen exchanger family LPH48_04970 PF02254 TrkA-N domain LPH48_04975 PF00593 TonB dependent receptor LPH48_04975 PF07715 TonB-dependent Receptor Plug Domain LPH48_04980 PF01323 DSBA-like thioredoxin domain LPH48_04990 PF12848 ABC transporter LPH48_04990 PF00005 ABC transporter LPH48_05005 PF01066 CDP-alcohol phosphatidyltransferase LPH48_05010 PF01541 GIY-YIG catalytic domain LPH48_05010 PF02151 UvrB/uvrC motif LPH48_05010 PF08459 UvrC Helix-hairpin-helix N-terminal LPH48_05015 PF01451 Low molecular weight phosphotyrosine protein phosphatase LPH48_05020 PF02348 Cytidylyltransferase LPH48_05025 PF10609 NUBPL iron-transfer P-loop NTPase LPH48_05030 PF00202 Aminotransferase class-III LPH48_05040 PF00490 Delta-aminolevulinic acid dehydratase LPH48_05050 PF12146 Serine aminopeptidase, S33 LPH48_05065 PF13932 GidA associated domain LPH48_05065 PF01134 Glucose inhibited division protein A LPH48_05085 PF13649 Methyltransferase domain LPH48_05105 PF02649 Type I GTP cyclohydrolase folE2 LPH48_05110 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_05115 PF00873 AcrB/AcrD/AcrF family LPH48_05120 PF00529 HlyD membrane-fusion protein of T1SS LPH48_05120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LPH48_05125 PF05088 Bacterial NAD-glutamate dehydrogenase LPH48_05130 PF01513 ATP-NAD kinase LPH48_05155 PF12706 Beta-lactamase superfamily domain LPH48_05165 PF08411 Exonuclease C-terminal LPH48_05165 PF00929 Exonuclease LPH48_05185 PF00999 Sodium/hydrogen exchanger family LPH48_05195 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LPH48_05205 PF01812 5-formyltetrahydrofolate cyclo-ligase family LPH48_05225 PF03695 Uncharacterised protein family (UPF0149) LPH48_05230 PF00557 Metallopeptidase family M24 LPH48_05230 PF05195 Aminopeptidase P, N-terminal domain LPH48_05235 PF00293 NUDIX domain LPH48_05270 PF01063 Amino-transferase class IV LPH48_05285 PF02954 Bacterial regulatory protein, Fis family LPH48_05295 PF01381 Helix-turn-helix LPH48_05310 PF00535 Glycosyl transferase family 2 LPH48_05320 PF00925 GTP cyclohydrolase II LPH48_05330 PF08534 Redoxin LPH48_05355 PF00959 Phage lysozyme LPH48_05375 PF01367 5'-3' exonuclease, C-terminal SAM fold LPH48_05375 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LPH48_05375 PF00476 DNA polymerase family A LPH48_05375 PF01612 3'-5' exonuclease LPH48_05400 PF07963 Prokaryotic N-terminal methylation motif LPH48_05400 PF00114 Pilin (bacterial filament) LPH48_05415 PF00753 Metallo-beta-lactamase superfamily LPH48_05415 PF16123 Hydroxyacylglutathione hydrolase C-terminus LPH48_05425 PF00075 RNase H LPH48_05430 PF00929 Exonuclease LPH48_05450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LPH48_05460 PF13632 Glycosyl transferase family group 2 LPH48_05465 PF02230 Phospholipase/Carboxylesterase LPH48_05470 PF06580 Histidine kinase LPH48_05470 PF07694 5TMR of 5TMR-LYT LPH48_05475 PF00072 Response regulator receiver domain LPH48_05475 PF04397 LytTr DNA-binding domain LPH48_05480 PF03900 Porphobilinogen deaminase, C-terminal domain LPH48_05480 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LPH48_05495 PF00437 Type II/IV secretion system protein LPH48_05500 PF00437 Type II/IV secretion system protein LPH48_05515 PF00535 Glycosyl transferase family 2 LPH48_05525 PF02801 Beta-ketoacyl synthase, C-terminal domain LPH48_05525 PF00109 Beta-ketoacyl synthase, N-terminal domain LPH48_05540 PF03706 Lysylphosphatidylglycerol synthase TM region LPH48_05540 PF09924 Uncharacterised conserved protein (DUF2156) LPH48_05545 PF01042 Endoribonuclease L-PSP LPH48_05560 PF01430 Hsp33 protein LPH48_05565 PF00912 Transglycosylase LPH48_05570 PF00488 MutS domain V LPH48_05570 PF05190 MutS family domain IV LPH48_05570 PF05192 MutS domain III LPH48_05570 PF05188 MutS domain II LPH48_05570 PF01624 MutS domain I LPH48_05575 PF01168 Alanine racemase, N-terminal domain LPH48_05590 PF08279 HTH domain LPH48_05590 PF02237 Biotin protein ligase C terminal domain LPH48_05590 PF03099 Biotin/lipoate A/B protein ligase family LPH48_05595 PF03309 Type III pantothenate kinase LPH48_05625 PF01183 Glycosyl hydrolases family 25 LPH48_05645 PF01381 Helix-turn-helix LPH48_05655 PF07963 Prokaryotic N-terminal methylation motif LPH48_05655 PF00114 Pilin (bacterial filament) LPH48_05755 PF00589 Phage integrase family LPH48_05770 PF00959 Phage lysozyme LPH48_05785 PF00574 Clp protease LPH48_05825 PF01022 Bacterial regulatory protein, arsR family LPH48_05840 PF00873 AcrB/AcrD/AcrF family LPH48_05865 PF00581 Rhodanese-like domain LPH48_05870 PF02556 Preprotein translocase subunit SecB LPH48_05875 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LPH48_05875 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LPH48_05900 PF12169 DNA polymerase III subunits gamma and tau domain III LPH48_05900 PF12170 DNA polymerase III tau subunit V interacting with alpha LPH48_05905 PF02575 YbaB/EbfC DNA-binding family LPH48_05910 PF13662 Toprim domain LPH48_05910 PF02132 RecR protein LPH48_05915 PF01230 HIT domain LPH48_05925 PF11992 Domain of unknown function (DUF3488) LPH48_05925 PF13559 Domain of unknown function (DUF4129) LPH48_05925 PF01841 Transglutaminase-like superfamily LPH48_05935 PF07726 ATPase family associated with various cellular activities (AAA) LPH48_05935 PF17863 AAA lid domain LPH48_05945 PF02620 Large ribosomal RNA subunit accumulation protein YceD LPH48_05950 PF01783 Ribosomal L32p protein family LPH48_05955 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH48_05955 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH48_05970 PF00553 Cellulose binding domain LPH48_05970 PF00041 Fibronectin type III domain LPH48_05970 PF01341 Glycosyl hydrolases family 6 LPH48_05975 PF08502 LeuA allosteric (dimerisation) domain LPH48_05975 PF00682 HMGL-like LPH48_05980 PF00291 Pyridoxal-phosphate dependent enzyme LPH48_05990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LPH48_05990 PF00205 Thiamine pyrophosphate enzyme, central domain LPH48_05990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LPH48_05995 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LPH48_05995 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LPH48_06000 PF17804 Tail specific protease N-terminal domain LPH48_06000 PF03572 Peptidase family S41 LPH48_06000 PF00595 PDZ domain LPH48_06000 PF11818 C-terminal domain of tail specific protease (DUF3340) LPH48_06005 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family LPH48_06010 PF02566 OsmC-like protein LPH48_06015 PF03969 AFG1-like ATPase LPH48_06020 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH48_06025 PF02492 CobW/HypB/UreG, nucleotide-binding domain LPH48_06025 PF07683 Cobalamin synthesis protein cobW C-terminal domain LPH48_06035 PF00551 Formyl transferase LPH48_06045 PF03109 ABC1 family LPH48_06055 PF12241 Trans-2-enoyl-CoA reductase catalytic region LPH48_06055 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LPH48_06055 PF07055 Enoyl reductase FAD binding domain LPH48_06075 PF00881 Nitroreductase family LPH48_06080 PF04264 YceI-like domain LPH48_06085 PF02673 Bacitracin resistance protein BacA LPH48_06090 PF03951 Glutamine synthetase, beta-Grasp domain LPH48_06090 PF00120 Glutamine synthetase, catalytic domain LPH48_06095 PF00543 Nitrogen regulatory protein P-II LPH48_06100 PF00909 Ammonium Transporter Family LPH48_06115 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LPH48_06115 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LPH48_06120 PF00890 FAD binding domain LPH48_06120 PF02910 Fumarate reductase flavoprotein C-term LPH48_06125 PF02445 Quinolinate synthetase A protein LPH48_06130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH48_06130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH48_06135 PF01026 TatD related DNase LPH48_06170 PF02881 SRP54-type protein, helical bundle domain LPH48_06170 PF00448 SRP54-type protein, GTPase domain LPH48_06175 PF14815 NUDIX domain LPH48_06175 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH48_06175 PF00633 Helix-hairpin-helix motif LPH48_06180 PF04362 Bacterial Fe(2+) trafficking LPH48_06190 PF01709 Transcriptional regulator LPH48_06195 PF02075 Crossover junction endodeoxyribonuclease RuvC LPH48_06200 PF07499 RuvA, C-terminal domain LPH48_06200 PF01330 RuvA N terminal domain LPH48_06205 PF02705 K+ potassium transporter LPH48_06210 PF05491 RuvB C-terminal winged helix domain LPH48_06210 PF05496 Holliday junction DNA helicase RuvB P-loop domain LPH48_06210 PF17864 RuvB AAA lid domain LPH48_06215 PF03061 Thioesterase superfamily LPH48_06220 PF01618 MotA/TolQ/ExbB proton channel family LPH48_06225 PF02472 Biopolymer transport protein ExbD/TolR LPH48_06235 PF07676 WD40-like Beta Propeller Repeat LPH48_06235 PF04052 TolB amino-terminal domain LPH48_06240 PF00691 OmpA family LPH48_06250 PF04055 Radical SAM superfamily LPH48_06255 PF00300 Histidine phosphatase superfamily (branch 1) LPH48_06260 PF04493 Endonuclease V LPH48_06265 PF00854 POT family LPH48_06270 PF00255 Glutathione peroxidase LPH48_06275 PF00175 Oxidoreductase NAD-binding domain LPH48_06275 PF00970 Oxidoreductase FAD-binding domain LPH48_06280 PF01964 Radical SAM ThiC family LPH48_06280 PF13667 ThiC-associated domain LPH48_06285 PF10459 Peptidase S46 LPH48_06290 PF00300 Histidine phosphatase superfamily (branch 1) LPH48_06300 PF01850 PIN domain LPH48_06375 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LPH48_06380 PF04221 RelB antitoxin LPH48_06455 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LPH48_06510 PF06508 Queuosine biosynthesis protein QueC LPH48_06515 PF00152 tRNA synthetases class II (D, K and N) LPH48_06515 PF02938 GAD domain LPH48_06515 PF01336 OB-fold nucleic acid binding domain LPH48_06535 PF05681 Fumarate hydratase (Fumerase) LPH48_06535 PF05683 Fumarase C-terminus LPH48_06555 PF01648 4'-phosphopantetheinyl transferase superfamily LPH48_06560 PF02527 rRNA small subunit methyltransferase G LPH48_06565 PF02779 Transketolase, pyrimidine binding domain LPH48_06565 PF00456 Transketolase, thiamine diphosphate binding domain LPH48_06565 PF02780 Transketolase, C-terminal domain LPH48_06570 PF00375 Sodium:dicarboxylate symporter family LPH48_06580 PF01625 Peptide methionine sulfoxide reductase LPH48_06595 PF01432 Peptidase family M3 LPH48_06600 PF06903 VirK protein LPH48_06605 PF08245 Mur ligase middle domain LPH48_06605 PF02875 Mur ligase family, glutamate ligase domain LPH48_06620 PF00156 Phosphoribosyl transferase domain LPH48_06630 PF01339 CheB methylesterase LPH48_06630 PF00072 Response regulator receiver domain LPH48_06635 PF01584 CheW-like domain LPH48_06635 PF02895 Signal transducing histidine kinase, homodimeric domain LPH48_06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_06635 PF01627 Hpt domain LPH48_06635 PF00072 Response regulator receiver domain LPH48_06640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LPH48_06640 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LPH48_06645 PF01584 CheW-like domain LPH48_06650 PF00072 Response regulator receiver domain LPH48_06655 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LPH48_06655 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LPH48_06670 PF02092 Glycyl-tRNA synthetase beta subunit LPH48_06670 PF05746 DALR anticodon binding domain LPH48_06675 PF02091 Glycyl-tRNA synthetase alpha subunit LPH48_06680 PF00795 Carbon-nitrogen hydrolase LPH48_06680 PF02540 NAD synthase LPH48_06700 PF03692 Putative zinc- or iron-chelating domain LPH48_06710 PF00561 alpha/beta hydrolase fold LPH48_06720 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LPH48_06720 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LPH48_06730 PF00588 SpoU rRNA Methylase family LPH48_06740 PF01808 AICARFT/IMPCHase bienzyme LPH48_06740 PF02142 MGS-like domain LPH48_06745 PF02843 Phosphoribosylglycinamide synthetase, C domain LPH48_06745 PF02844 Phosphoribosylglycinamide synthetase, N domain LPH48_06745 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LPH48_06765 PF12805 FUSC-like inner membrane protein yccS LPH48_06775 PF03186 CobD/Cbib protein LPH48_06780 PF03895 YadA-like membrane anchor domain LPH48_06780 PF05658 Head domain of trimeric autotransporter adhesin LPH48_06780 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH48_06785 PF01227 GTP cyclohydrolase I LPH48_06790 PF00132 Bacterial transferase hexapeptide (six repeats) LPH48_06795 PF08032 RNA 2'-O ribose methyltransferase substrate binding LPH48_06795 PF00588 SpoU rRNA Methylase family LPH48_06800 PF00773 RNB domain LPH48_06800 PF08461 Ribonuclease R winged-helix domain LPH48_06800 PF00575 S1 RNA binding domain LPH48_06800 PF08206 Ribonuclease B OB domain LPH48_06800 PF17876 Cold shock domain LPH48_06810 PF00959 Phage lysozyme LPH48_06880 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LPH48_06885 PF07690 Major Facilitator Superfamily LPH48_06890 PF03466 LysR substrate binding domain LPH48_06890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_06905 PF01161 Phosphatidylethanolamine-binding protein LPH48_06910 PF00719 Inorganic pyrophosphatase LPH48_06915 PF00085 Thioredoxin LPH48_06925 PF13603 Leucyl-tRNA synthetase, Domain 2 LPH48_06925 PF08264 Anticodon-binding domain of tRNA LPH48_06925 PF00133 tRNA synthetases class I (I, L, M and V) LPH48_06940 PF01467 Cytidylyltransferase-like LPH48_06955 PF13406 Transglycosylase SLT domain LPH48_06960 PF05036 Sporulation related domain LPH48_06960 PF03330 Lytic transglycolase LPH48_07065 PF04829 Pre-toxin domain with VENN motif LPH48_07065 PF05860 haemagglutination activity domain LPH48_07065 PF13332 Hemagglutinin repeat LPH48_07065 PF15605 Bacterial toxin 28 LPH48_07095 PF13332 Hemagglutinin repeat LPH48_07095 PF05860 haemagglutination activity domain LPH48_07095 PF04829 Pre-toxin domain with VENN motif LPH48_07100 PF04829 Pre-toxin domain with VENN motif LPH48_07100 PF05860 haemagglutination activity domain LPH48_07100 PF13332 Hemagglutinin repeat LPH48_07100 PF13018 Extended Signal Peptide of Type V secretion system LPH48_07195 PF04829 Pre-toxin domain with VENN motif LPH48_07195 PF15605 Bacterial toxin 28 LPH48_07195 PF05860 haemagglutination activity domain LPH48_07195 PF04829 Pre-toxin domain with VENN motif LPH48_07195 PF05860 haemagglutination activity domain LPH48_07195 PF15605 Bacterial toxin 28 LPH48_07195 PF13332 Hemagglutinin repeat LPH48_07195 PF13332 Hemagglutinin repeat LPH48_07200 PF04829 Pre-toxin domain with VENN motif LPH48_07200 PF05860 haemagglutination activity domain LPH48_07200 PF13332 Hemagglutinin repeat LPH48_07200 PF13018 Extended Signal Peptide of Type V secretion system LPH48_07215 PF01810 LysE type translocator LPH48_07235 PF01132 Elongation factor P (EF-P) OB domain LPH48_07235 PF08207 Elongation factor P (EF-P) KOW-like domain LPH48_07235 PF09285 Elongation factor P, C-terminal LPH48_07240 PF02913 FAD linked oxidases, C-terminal domain LPH48_07240 PF01565 FAD binding domain LPH48_07245 PF01842 ACT domain LPH48_07245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LPH48_07245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LPH48_07250 PF13520 Amino acid permease LPH48_07255 PF13520 Amino acid permease LPH48_07260 PF00596 Class II Aldolase and Adducin N-terminal domain LPH48_07265 PF03079 ARD/ARD' family LPH48_07295 PF01502 Phosphoribosyl-AMP cyclohydrolase LPH48_07295 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LPH48_07300 PF00977 Histidine biosynthesis protein LPH48_07305 PF00977 Histidine biosynthesis protein LPH48_07310 PF00117 Glutamine amidotransferase class-I LPH48_07315 PF00475 Imidazoleglycerol-phosphate dehydratase LPH48_07320 PF00155 Aminotransferase class I and II LPH48_07325 PF00815 Histidinol dehydrogenase LPH48_07330 PF01634 ATP phosphoribosyltransferase LPH48_07330 PF08029 HisG, C-terminal domain LPH48_07345 PF03129 Anticodon binding domain LPH48_07345 PF13393 Histidyl-tRNA synthetase LPH48_07350 PF14821 Threonine synthase N terminus LPH48_07350 PF00291 Pyridoxal-phosphate dependent enzyme LPH48_07355 PF00288 GHMP kinases N terminal domain LPH48_07355 PF08544 GHMP kinases C terminal LPH48_07360 PF00742 Homoserine dehydrogenase LPH48_07360 PF13840 ACT domain LPH48_07360 PF03447 Homoserine dehydrogenase, NAD binding domain LPH48_07360 PF01842 ACT domain LPH48_07360 PF00696 Amino acid kinase family LPH48_07370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LPH48_07370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LPH48_07375 PF03652 Holliday junction resolvase LPH48_07380 PF02622 Uncharacterized ACR, COG1678 LPH48_07385 PF00768 D-alanyl-D-alanine carboxypeptidase LPH48_07385 PF07943 Penicillin-binding protein 5, C-terminal domain LPH48_07390 PF00141 Peroxidase LPH48_07395 PF01556 DnaJ C terminal domain LPH48_07395 PF00226 DnaJ domain LPH48_07405 PF06832 Penicillin-Binding Protein C-terminus Family LPH48_07405 PF00912 Transglycosylase LPH48_07405 PF00905 Penicillin binding protein transpeptidase domain LPH48_07410 PF07715 TonB-dependent Receptor Plug Domain LPH48_07410 PF00593 TonB dependent receptor LPH48_07425 PF04542 Sigma-70 region 2 LPH48_07425 PF08281 Sigma-70, region 4 LPH48_07435 PF13180 PDZ domain LPH48_07440 PF03144 Elongation factor Tu domain 2 LPH48_07440 PF00009 Elongation factor Tu GTP binding domain LPH48_07440 PF00679 Elongation factor G C-terminus LPH48_07440 PF06421 GTP-binding protein LepA C-terminus LPH48_07445 PF10502 Signal peptidase, peptidase S26 LPH48_07455 PF00035 Double-stranded RNA binding motif LPH48_07455 PF14622 Ribonuclease-III-like LPH48_07460 PF07650 KH domain LPH48_07460 PF01926 50S ribosome-binding GTPase LPH48_07465 PF02565 Recombination protein O C terminal LPH48_07465 PF11967 Recombination protein O N terminal LPH48_07470 PF02779 Transketolase, pyrimidine binding domain LPH48_07470 PF02780 Transketolase, C-terminal domain LPH48_07470 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LPH48_07480 PF00474 Sodium:solute symporter family LPH48_07490 PF13193 AMP-binding enzyme C-terminal domain LPH48_07490 PF00501 AMP-binding enzyme LPH48_07490 PF16177 Acetyl-coenzyme A synthetase N-terminus LPH48_07495 PF02659 Putative manganese efflux pump LPH48_07500 PF00106 short chain dehydrogenase LPH48_07515 PF13360 PQQ-like domain LPH48_07520 PF07676 WD40-like Beta Propeller Repeat LPH48_07520 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region LPH48_07520 PF00326 Prolyl oligopeptidase family LPH48_07525 PF03169 OPT oligopeptide transporter protein LPH48_07530 PF01266 FAD dependent oxidoreductase LPH48_07530 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LPH48_07535 PF00230 Major intrinsic protein LPH48_07540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LPH48_07540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LPH48_07555 PF08267 Cobalamin-independent synthase, N-terminal domain LPH48_07555 PF01717 Cobalamin-independent synthase, Catalytic domain LPH48_07560 PF02677 Epoxyqueuosine reductase QueH LPH48_07570 PF00501 AMP-binding enzyme LPH48_07580 PF00535 Glycosyl transferase family 2 LPH48_07585 PF01370 NAD dependent epimerase/dehydratase family LPH48_07590 PF17762 HTH domain found in ParB protein LPH48_07590 PF02195 ParB-like nuclease domain LPH48_07595 PF13614 AAA domain LPH48_07610 PF02403 Seryl-tRNA synthetase N-terminal domain LPH48_07610 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH48_07615 PF03544 Gram-negative bacterial TonB protein C-terminal LPH48_07620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH48_07625 PF00800 Prephenate dehydratase LPH48_07625 PF01817 Chorismate mutase type II LPH48_07625 PF01842 ACT domain LPH48_07630 PF00266 Aminotransferase class-V LPH48_07640 PF12679 ABC-2 family transporter protein LPH48_07645 PF00005 ABC transporter LPH48_07675 PF00440 Bacterial regulatory proteins, tetR family LPH48_07680 PF01209 ubiE/COQ5 methyltransferase family LPH48_07690 PF00294 pfkB family carbohydrate kinase LPH48_07695 PF07690 Major Facilitator Superfamily LPH48_07705 PF04102 SlyX LPH48_07710 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LPH48_07710 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPH48_07710 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LPH48_07715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH48_07715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH48_07720 PF00255 Glutathione peroxidase LPH48_07730 PF00005 ABC transporter LPH48_07745 PF10415 Fumarase C C-terminus LPH48_07745 PF00206 Lyase LPH48_07750 PF00206 Lyase LPH48_07750 PF08328 Adenylosuccinate lyase C-terminal LPH48_07755 PF08007 Cupin superfamily protein LPH48_07760 PF02779 Transketolase, pyrimidine binding domain LPH48_07760 PF00676 Dehydrogenase E1 component LPH48_07760 PF16078 2-oxoglutarate dehydrogenase N-terminus LPH48_07760 PF16870 2-oxoglutarate dehydrogenase C-terminal LPH48_07765 PF00364 Biotin-requiring enzyme LPH48_07765 PF02817 e3 binding domain LPH48_07765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH48_07770 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH48_07770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH48_07780 PF00899 ThiF family LPH48_07795 PF00027 Cyclic nucleotide-binding domain LPH48_07795 PF00325 Bacterial regulatory proteins, crp family LPH48_07800 PF02675 S-adenosylmethionine decarboxylase LPH48_07805 PF03232 Ubiquinone biosynthesis protein COQ7 LPH48_07810 PF00572 Ribosomal protein L13 LPH48_07815 PF00380 Ribosomal protein S9/S16 LPH48_07820 PF00285 Citrate synthase, C-terminal domain LPH48_07825 PF01197 Ribosomal protein L31 LPH48_07830 PF00814 Glycoprotease family LPH48_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_07835 PF03466 LysR substrate binding domain LPH48_07840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH48_07840 PF13192 Thioredoxin domain LPH48_07845 PF10417 C-terminal domain of 1-Cys peroxiredoxin LPH48_07845 PF00578 AhpC/TSA family LPH48_07850 PF13018 Extended Signal Peptide of Type V secretion system LPH48_07850 PF03895 YadA-like membrane anchor domain LPH48_07850 PF05658 Head domain of trimeric autotransporter adhesin LPH48_07850 PF05662 Coiled stalk of trimeric autotransporter adhesin LPH48_07855 PF00263 Bacterial type II and III secretion system protein LPH48_07855 PF03958 Bacterial type II/III secretion system short domain LPH48_07865 PF10741 Type II secretion system (T2SS), protein M subtype b LPH48_07870 PF05137 Fimbrial assembly protein (PilN) LPH48_07875 PF03934 Type II secretion system (T2SS), protein K LPH48_07885 PF03934 Type II secretion system (T2SS), protein K LPH48_07895 PF07963 Prokaryotic N-terminal methylation motif LPH48_07900 PF12019 Type II transport protein GspH LPH48_07905 PF08334 Type II secretion system (T2SS), protein G LPH48_07910 PF00482 Type II secretion system (T2SS), protein F LPH48_07915 PF00437 Type II/IV secretion system protein LPH48_07915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH48_07935 PF17827 PrmC N-terminal domain LPH48_07935 PF05175 Methyltransferase small domain LPH48_07945 PF00561 alpha/beta hydrolase fold LPH48_07960 PF04055 Radical SAM superfamily LPH48_07960 PF06969 HemN C-terminal domain LPH48_07965 PF01725 Ham1 family LPH48_07970 PF03725 3' exoribonuclease family, domain 2 LPH48_07970 PF01138 3' exoribonuclease family, domain 1 LPH48_07975 PF03755 YicC-like family, N-terminal region LPH48_07975 PF08340 Domain of unknown function (DUF1732) LPH48_07980 PF00625 Guanylate kinase LPH48_07985 PF01192 RNA polymerase Rpb6 LPH48_07990 PF00009 Elongation factor Tu GTP binding domain LPH48_07995 PF01507 Phosphoadenosine phosphosulfate reductase family LPH48_08000 PF00175 Oxidoreductase NAD-binding domain LPH48_08000 PF00667 FAD binding domain LPH48_08000 PF00258 Flavodoxin LPH48_08005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LPH48_08005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LPH48_08010 PF01507 Phosphoadenosine phosphosulfate reductase family LPH48_08035 PF13369 Transglutaminase-like superfamily LPH48_08065 PF11838 ERAP1-like C-terminal domain LPH48_08065 PF01433 Peptidase family M1 domain LPH48_08070 PF01209 ubiE/COQ5 methyltransferase family LPH48_08080 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_08080 PF07724 AAA domain (Cdc48 subfamily) LPH48_08080 PF10431 C-terminal, D2-small domain, of ClpB protein LPH48_08085 PF00227 Proteasome subunit LPH48_08095 PF02899 Phage integrase, N-terminal SAM-like domain LPH48_08095 PF00589 Phage integrase family LPH48_08105 PF01678 Diaminopimelate epimerase LPH48_08115 PF00326 Prolyl oligopeptidase family LPH48_08115 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LPH48_08125 PF02082 Transcriptional regulator LPH48_08130 PF01458 Uncharacterized protein family (UPF0051) LPH48_08135 PF00005 ABC transporter LPH48_08140 PF01458 Uncharacterized protein family (UPF0051) LPH48_08145 PF00266 Aminotransferase class-V LPH48_08150 PF00355 Rieske [2Fe-2S] domain LPH48_08155 PF13439 Glycosyltransferase Family 4 LPH48_08155 PF00534 Glycosyl transferases group 1 LPH48_08160 PF01522 Polysaccharide deacetylase LPH48_08165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LPH48_08165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LPH48_08165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LPH48_08165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LPH48_08170 PF17848 Acetyl-coA carboxylase zinc finger domain LPH48_08170 PF01039 Carboxyl transferase domain LPH48_08190 PF01979 Amidohydrolase family LPH48_08195 PF01380 SIS domain LPH48_08205 PF07690 Major Facilitator Superfamily LPH48_08215 PF02685 Glucokinase LPH48_08240 PF00512 His Kinase A (phospho-acceptor) domain LPH48_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_08255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LPH48_08260 PF16193 AAA C-terminal domain LPH48_08260 PF12002 MgsA AAA+ ATPase C terminal LPH48_08260 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_08265 PF03548 Outer membrane lipoprotein carrier protein LolA LPH48_08280 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LPH48_08280 PF17854 FtsK alpha domain LPH48_08280 PF09397 Ftsk gamma domain LPH48_08280 PF01580 FtsK/SpoIIIE family LPH48_08285 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH48_08295 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LPH48_08300 PF01176 Translation initiation factor 1A / IF-1 LPH48_08305 PF07724 AAA domain (Cdc48 subfamily) LPH48_08305 PF17871 AAA lid domain LPH48_08305 PF02861 Clp amino terminal domain, pathogenicity island component LPH48_08305 PF10431 C-terminal, D2-small domain, of ClpB protein LPH48_08305 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_08310 PF02617 ATP-dependent Clp protease adaptor protein ClpS LPH48_08315 PF00293 NUDIX domain LPH48_08325 PF04356 Protein of unknown function (DUF489) LPH48_08340 PF01323 DSBA-like thioredoxin domain LPH48_08350 PF01926 50S ribosome-binding GTPase LPH48_08355 PF04107 Glutamate-cysteine ligase family 2(GCS2) LPH48_08365 PF00202 Aminotransferase class-III LPH48_08370 PF00027 Cyclic nucleotide-binding domain LPH48_08370 PF00520 Ion transport protein LPH48_08375 PF00589 Phage integrase family LPH48_08375 PF02899 Phage integrase, N-terminal SAM-like domain LPH48_08380 PF13098 Thioredoxin-like domain LPH48_08380 PF10411 Disulfide bond isomerase protein N-terminus LPH48_08385 PF02769 AIR synthase related protein, C-terminal domain LPH48_08385 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LPH48_08385 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LPH48_08395 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LPH48_08405 PF00571 CBS domain LPH48_08405 PF01380 SIS domain LPH48_08425 PF00005 ABC transporter LPH48_08425 PF12399 Branched-chain amino acid ATP-binding cassette transporter LPH48_08430 PF00309 Sigma-54 factor, Activator interacting domain (AID) LPH48_08430 PF04963 Sigma-54 factor, core binding domain LPH48_08430 PF04552 Sigma-54, DNA binding domain LPH48_08435 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LPH48_08440 PF07475 HPr Serine kinase C-terminal domain LPH48_08440 PF02603 HPr Serine kinase N terminus LPH48_08445 PF03668 P-loop ATPase protein family LPH48_08455 PF00381 PTS HPr component phosphorylation site LPH48_08460 PF05524 PEP-utilising enzyme, N-terminal LPH48_08460 PF00391 PEP-utilising enzyme, mobile domain LPH48_08460 PF02896 PEP-utilising enzyme, TIM barrel domain LPH48_08465 PF00571 CBS domain LPH48_08465 PF01769 Divalent cation transporter LPH48_08465 PF03448 MgtE intracellular N domain LPH48_08470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LPH48_08505 PF04542 Sigma-70 region 2 LPH48_08505 PF08281 Sigma-70, region 4 LPH48_08515 PF00082 Subtilase family LPH48_08525 PF00436 Single-strand binding protein family LPH48_08530 PF00348 Polyprenyl synthetase LPH48_08535 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LPH48_08535 PF06481 COX Aromatic Rich Motif LPH48_08540 PF00115 Cytochrome C and Quinol oxidase polypeptide I LPH48_08545 PF00510 Cytochrome c oxidase subunit III LPH48_08550 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LPH48_08555 PF02347 Glycine cleavage system P-protein LPH48_08565 PF00270 DEAD/DEAH box helicase LPH48_08565 PF11898 Domain of unknown function (DUF3418) LPH48_08565 PF04408 Helicase associated domain (HA2) LPH48_08565 PF00271 Helicase conserved C-terminal domain LPH48_08565 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LPH48_08570 PF00210 Ferritin-like domain LPH48_08575 PF00270 DEAD/DEAH box helicase LPH48_08575 PF00271 Helicase conserved C-terminal domain LPH48_08575 PF16124 RecQ zinc-binding LPH48_08575 PF09382 RQC domain LPH48_08575 PF00570 HRDC domain LPH48_08595 PF00296 Luciferase-like monooxygenase LPH48_08600 PF18073 Rubredoxin metal binding domain LPH48_08615 PF00290 Tryptophan synthase alpha chain LPH48_08620 PF00291 Pyridoxal-phosphate dependent enzyme LPH48_08625 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LPH48_08630 PF01416 tRNA pseudouridine synthase LPH48_08640 PF01118 Semialdehyde dehydrogenase, NAD binding domain LPH48_08640 PF02774 Semialdehyde dehydrogenase, dimerisation domain LPH48_08650 PF01264 Chorismate synthase LPH48_08655 PF05175 Methyltransferase small domain LPH48_08665 PF06594 Haemolysin-type calcium binding protein related domain LPH48_08665 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LPH48_08720 PF00348 Polyprenyl synthetase LPH48_08725 PF02609 Exonuclease VII small subunit LPH48_08730 PF09179 TilS substrate binding domain LPH48_08730 PF01171 PP-loop family LPH48_08730 PF11734 TilS substrate C-terminal domain LPH48_08740 PF00375 Sodium:dicarboxylate symporter family LPH48_08745 PF00877 NlpC/P60 family LPH48_08750 PF00877 NlpC/P60 family LPH48_08755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH48_08760 PF04235 Protein of unknown function (DUF418) LPH48_08785 PF10576 Iron-sulfur binding domain of endonuclease III LPH48_08785 PF00633 Helix-hairpin-helix motif LPH48_08785 PF00730 HhH-GPD superfamily base excision DNA repair protein LPH48_08800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LPH48_08800 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LPH48_08805 PF00293 NUDIX domain LPH48_08830 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LPH48_08830 PF01488 Shikimate / quinate 5-dehydrogenase LPH48_08830 PF08501 Shikimate dehydrogenase substrate binding domain LPH48_08835 PF08543 Phosphomethylpyrimidine kinase LPH48_08835 PF02581 Thiamine monophosphate synthase LPH48_08855 PF11412 Disulphide bond corrector protein DsbC LPH48_08855 PF02683 Cytochrome C biogenesis protein transmembrane region LPH48_08860 PF03091 CutA1 divalent ion tolerance protein LPH48_08865 PF00166 Chaperonin 10 Kd subunit LPH48_08870 PF00118 TCP-1/cpn60 chaperonin family LPH48_08895 PF01370 NAD dependent epimerase/dehydratase family LPH48_08900 PF01370 NAD dependent epimerase/dehydratase family LPH48_08905 PF16363 GDP-mannose 4,6 dehydratase LPH48_08920 PF00291 Pyridoxal-phosphate dependent enzyme LPH48_08940 PF07715 TonB-dependent Receptor Plug Domain LPH48_08940 PF00593 TonB dependent receptor LPH48_08945 PF13640 2OG-Fe(II) oxygenase superfamily LPH48_08945 PF18331 PKHD-type hydroxylase C-terminal domain LPH48_08965 PF02424 ApbE family LPH48_08970 PF00667 FAD binding domain LPH48_08970 PF00258 Flavodoxin LPH48_08970 PF00175 Oxidoreductase NAD-binding domain LPH48_08985 PF01636 Phosphotransferase enzyme family LPH48_08990 PF00483 Nucleotidyl transferase LPH48_08995 PF00308 Bacterial dnaA protein LPH48_09000 PF01594 AI-2E family transporter LPH48_09010 PF00586 AIR synthase related protein, N-terminal domain LPH48_09010 PF02769 AIR synthase related protein, C-terminal domain LPH48_09015 PF00551 Formyl transferase LPH48_09030 PF02223 Thymidylate kinase LPH48_09035 PF01431 Peptidase family M13 LPH48_09035 PF05649 Peptidase family M13 LPH48_09040 PF07977 FabA-like domain LPH48_09045 PF01171 PP-loop family LPH48_09050 PF04381 Putative exonuclease, RdgC LPH48_09060 PF00762 Ferrochelatase LPH48_09070 PF02416 mttA/Hcf106 family LPH48_09075 PF02416 mttA/Hcf106 family LPH48_09080 PF00902 Sec-independent protein translocase protein (TatC) LPH48_09090 PF00117 Glutamine amidotransferase class-I LPH48_09090 PF00958 GMP synthase C terminal domain LPH48_09090 PF02540 NAD synthase LPH48_09095 PF00127 Copper binding proteins, plastocyanin/azurin family LPH48_09100 PF03193 RsgA GTPase LPH48_09105 PF02021 Uncharacterised protein family UPF0102 LPH48_09110 PF04348 LppC putative lipoprotein LPH48_09115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH48_09120 PF00593 TonB dependent receptor LPH48_09120 PF07715 TonB-dependent Receptor Plug Domain LPH48_09125 PF01588 Putative tRNA binding domain LPH48_09125 PF09334 tRNA synthetases class I (M) LPH48_09135 PF04060 Putative Fe-S cluster LPH48_09180 PF07687 Peptidase dimerisation domain LPH48_09180 PF01546 Peptidase family M20/M25/M40 LPH48_09205 PF05567 Neisseria PilC beta-propeller domain LPH48_09230 PF11892 Domain of unknown function (DUF3412) LPH48_09230 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LPH48_09230 PF03641 Possible lysine decarboxylase LPH48_09235 PF12792 CSS motif domain associated with EAL LPH48_09235 PF00563 EAL domain LPH48_09245 PF00899 ThiF family LPH48_09250 PF01926 50S ribosome-binding GTPase LPH48_09250 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LPH48_09255 PF13360 PQQ-like domain LPH48_09255 PF01011 PQQ enzyme repeat LPH48_09275 PF04055 Radical SAM superfamily LPH48_09280 PF00334 Nucleoside diphosphate kinase LPH48_09285 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LPH48_09285 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LPH48_09290 PF00709 Adenylosuccinate synthetase LPH48_09300 PF01145 SPFH domain / Band 7 family LPH48_09305 PF01145 SPFH domain / Band 7 family LPH48_09305 PF12221 Bacterial membrane protein N terminal LPH48_09310 PF08240 Alcohol dehydrogenase GroES-like domain LPH48_09310 PF00107 Zinc-binding dehydrogenase LPH48_09315 PF00072 Response regulator receiver domain LPH48_09330 PF03129 Anticodon binding domain LPH48_09330 PF04073 Aminoacyl-tRNA editing domain LPH48_09330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH48_09340 PF01066 CDP-alcohol phosphatidyltransferase LPH48_09350 PF00583 Acetyltransferase (GNAT) family LPH48_09365 PF14310 Fibronectin type III-like domain LPH48_09365 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH48_09365 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH48_09370 PF00924 Mechanosensitive ion channel LPH48_09375 PF02152 Dihydroneopterin aldolase LPH48_09380 PF00814 Glycoprotease family LPH48_09385 PF01165 Ribosomal protein S21 LPH48_09390 PF09424 Yqey-like protein LPH48_09395 PF03631 Virulence factor BrkB LPH48_09400 PF10410 DnaB-helicase binding domain of primase LPH48_09400 PF08275 DNA primase catalytic core, N-terminal domain LPH48_09400 PF01807 CHC2 zinc finger LPH48_09400 PF08278 DNA primase DnaG DnaB-binding LPH48_09410 PF00579 tRNA synthetases class I (W and Y) LPH48_09415 PF13538 UvrD-like helicase C-terminal domain LPH48_09420 PF00580 UvrD/REP helicase N-terminal domain LPH48_09420 PF13361 UvrD-like helicase C-terminal domain LPH48_09420 PF12705 PD-(D/E)XK nuclease superfamily LPH48_09425 PF17946 RecC C-terminal domain LPH48_09430 PF00005 ABC transporter LPH48_09435 PF02405 Permease MlaE LPH48_09440 PF02470 MlaD protein LPH48_09445 PF05494 MlaC protein LPH48_09455 PF04333 MlaA lipoprotein LPH48_09460 PF02646 RmuC family LPH48_09465 PF00005 ABC transporter LPH48_09480 PF13520 Amino acid permease LPH48_09490 PF10672 S-adenosylmethionine-dependent methyltransferase LPH48_09490 PF17785 PUA-like domain LPH48_09495 PF03741 Integral membrane protein TerC family LPH48_09515 PF01521 Iron-sulphur cluster biosynthesis LPH48_09530 PF00072 Response regulator receiver domain LPH48_09530 PF00486 Transcriptional regulatory protein, C terminal LPH48_09535 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH48_09535 PF00672 HAMP domain LPH48_09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_09535 PF00512 His Kinase A (phospho-acceptor) domain LPH48_09535 PF00072 Response regulator receiver domain LPH48_09535 PF01627 Hpt domain LPH48_09540 PF01627 Hpt domain LPH48_09540 PF00672 HAMP domain LPH48_09540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_09540 PF00072 Response regulator receiver domain LPH48_09540 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LPH48_09540 PF00512 His Kinase A (phospho-acceptor) domain LPH48_09545 PF00210 Ferritin-like domain LPH48_09570 PF02773 S-adenosylmethionine synthetase, C-terminal domain LPH48_09570 PF02772 S-adenosylmethionine synthetase, central domain LPH48_09570 PF00438 S-adenosylmethionine synthetase, N-terminal domain LPH48_09580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_09585 PF00072 Response regulator receiver domain LPH48_09585 PF00486 Transcriptional regulatory protein, C terminal LPH48_09595 PF01207 Dihydrouridine synthase (Dus) LPH48_09600 PF00593 TonB dependent receptor LPH48_09600 PF07715 TonB-dependent Receptor Plug Domain LPH48_09615 PF00004 ATPase family associated with various cellular activities (AAA) LPH48_09615 PF07724 AAA domain (Cdc48 subfamily) LPH48_09615 PF17871 AAA lid domain LPH48_09615 PF02861 Clp amino terminal domain, pathogenicity island component LPH48_09615 PF10431 C-terminal, D2-small domain, of ClpB protein LPH48_09625 PF00301 Rubredoxin LPH48_09630 PF02581 Thiamine monophosphate synthase LPH48_09645 PF00067 Cytochrome P450 LPH48_09675 PF03796 DnaB-like helicase C terminal domain LPH48_09675 PF00772 DnaB-like helicase N terminal domain LPH48_09680 PF00691 OmpA family LPH48_09680 PF05736 OprF membrane domain LPH48_09690 PF00248 Aldo/keto reductase family LPH48_09695 PF17092 Penicillin-binding protein OB-like domain LPH48_09695 PF00912 Transglycosylase LPH48_09695 PF00905 Penicillin binding protein transpeptidase domain LPH48_09700 PF11104 Type IV pilus assembly protein PilM; LPH48_09705 PF05137 Fimbrial assembly protein (PilN) LPH48_09710 PF04350 Pilus assembly protein, PilO LPH48_09715 PF04351 Pilus assembly protein, PilP LPH48_09720 PF03958 Bacterial type II/III secretion system short domain LPH48_09720 PF11741 AMIN domain LPH48_09720 PF00263 Bacterial type II and III secretion system protein LPH48_09720 PF07660 Secretin and TonB N terminus short domain LPH48_09730 PF08019 Phosphoethanolamine transferase EptA/EptB LPH48_09730 PF00884 Sulfatase LPH48_09735 PF00067 Cytochrome P450 LPH48_09740 PF00270 DEAD/DEAH box helicase LPH48_09740 PF00271 Helicase conserved C-terminal domain LPH48_09740 PF17191 RecG wedge domain LPH48_09745 PF01042 Endoribonuclease L-PSP LPH48_09750 PF13291 ACT domain LPH48_09750 PF04607 Region found in RelA / SpoT proteins LPH48_09750 PF02824 TGS domain LPH48_09760 PF01565 FAD binding domain LPH48_09760 PF02913 FAD linked oxidases, C-terminal domain LPH48_09765 PF05736 OprF membrane domain LPH48_09765 PF00691 OmpA family LPH48_09770 PF02600 Disulfide bond formation protein DsbB LPH48_09775 PF07715 TonB-dependent Receptor Plug Domain LPH48_09775 PF00593 TonB dependent receptor LPH48_09780 PF02590 Predicted SPOUT methyltransferase LPH48_09795 PF00271 Helicase conserved C-terminal domain LPH48_09795 PF04851 Type III restriction enzyme, res subunit LPH48_09795 PF02151 UvrB/uvrC motif LPH48_09795 PF12344 Ultra-violet resistance protein B LPH48_09795 PF17757 UvrB interaction domain LPH48_09810 PF00701 Dihydrodipicolinate synthetase family LPH48_09820 PF00578 AhpC/TSA family LPH48_09825 PF02562 PhoH-like protein LPH48_09825 PF13638 PIN domain LPH48_09845 PF00586 AIR synthase related protein, N-terminal domain LPH48_09845 PF02769 AIR synthase related protein, C-terminal domain LPH48_09850 PF01029 NusB family LPH48_09855 PF00885 6,7-dimethyl-8-ribityllumazine synthase LPH48_09860 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LPH48_09860 PF00925 GTP cyclohydrolase II LPH48_09865 PF00677 Lumazine binding domain LPH48_09870 PF01872 RibD C-terminal domain LPH48_09870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LPH48_09880 PF03477 ATP cone domain LPH48_09890 PF00464 Serine hydroxymethyltransferase LPH48_09895 PF00005 ABC transporter LPH48_09895 PF12848 ABC transporter LPH48_09900 PF06039 Malate:quinone oxidoreductase (Mqo) LPH48_09905 PF04134 Protein of unknown function, DUF393 LPH48_09910 PF02578 Multi-copper polyphenol oxidoreductase laccase LPH48_09915 PF00849 RNA pseudouridylate synthase LPH48_09915 PF01479 S4 domain LPH48_09920 PF13525 Outer membrane lipoprotein LPH48_09930 PF02421 Ferrous iron transport protein B LPH48_09930 PF07670 Nucleoside recognition LPH48_09930 PF07664 Ferrous iron transport protein B C terminus LPH48_09945 PF04386 Stringent starvation protein B LPH48_09950 PF00043 Glutathione S-transferase, C-terminal domain LPH48_09950 PF02798 Glutathione S-transferase, N-terminal domain LPH48_09970 PF01464 Transglycosylase SLT domain LPH48_09975 PF01938 TRAM domain LPH48_09975 PF00919 Uncharacterized protein family UPF0004 LPH48_09975 PF04055 Radical SAM superfamily LPH48_09980 PF02562 PhoH-like protein LPH48_09985 PF02130 Uncharacterized protein family UPF0054 LPH48_09995 PF00571 CBS domain LPH48_09995 PF03471 Transporter associated domain LPH48_10025 PF04829 Pre-toxin domain with VENN motif LPH48_10025 PF05860 haemagglutination activity domain LPH48_10025 PF13332 Hemagglutinin repeat LPH48_10030 PF13332 Hemagglutinin repeat LPH48_10030 PF13018 Extended Signal Peptide of Type V secretion system LPH48_10030 PF04829 Pre-toxin domain with VENN motif LPH48_10030 PF05860 haemagglutination activity domain LPH48_10035 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LPH48_10035 PF17287 POTRA domain LPH48_10035 PF08479 POTRA domain, ShlB-type LPH48_10050 PF00521 DNA gyrase/topoisomerase IV, subunit A LPH48_10050 PF03989 DNA gyrase C-terminal domain, beta-propeller LPH48_10055 PF01008 Initiation factor 2 subunit family LPH48_10065 PF00152 tRNA synthetases class II (D, K and N) LPH48_10070 PF00583 Acetyltransferase (GNAT) family LPH48_10075 PF00533 BRCA1 C Terminus (BRCT) domain LPH48_10075 PF12826 Helix-hairpin-helix motif LPH48_10075 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LPH48_10075 PF03120 NAD-dependent DNA ligase OB-fold domain LPH48_10075 PF01653 NAD-dependent DNA ligase adenylation domain LPH48_10085 PF04354 ZipA, C-terminal FtsZ-binding domain LPH48_10090 PF02463 RecF/RecN/SMC N terminal domain LPH48_10095 PF01281 Ribosomal protein L9, N-terminal domain LPH48_10095 PF03948 Ribosomal protein L9, C-terminal domain LPH48_10100 PF01084 Ribosomal protein S18 LPH48_10105 PF01250 Ribosomal protein S6 LPH48_10110 PF01521 Iron-sulphur cluster biosynthesis LPH48_10115 PF01336 OB-fold nucleic acid binding domain LPH48_10115 PF00152 tRNA synthetases class II (D, K and N) LPH48_10120 PF01061 ABC-2 type transporter LPH48_10125 PF00005 ABC transporter LPH48_10135 PF01180 Dihydroorotate dehydrogenase LPH48_10140 PF01565 FAD binding domain LPH48_10140 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LPH48_10145 PF00892 EamA-like transporter family LPH48_10150 PF01569 PAP2 superfamily LPH48_10155 PF04551 GcpE protein LPH48_10165 PF00072 Response regulator receiver domain LPH48_10170 PF00889 Elongation factor TS LPH48_10175 PF00318 Ribosomal protein S2 LPH48_10190 PF00005 ABC transporter LPH48_10190 PF00664 ABC transporter transmembrane region LPH48_10210 PF02321 Outer membrane efflux protein LPH48_10215 PF12850 Calcineurin-like phosphoesterase superfamily domain LPH48_10220 PF02541 Ppx/GppA phosphatase family LPH48_10225 PF13089 Polyphosphate kinase N-terminal domain LPH48_10225 PF13090 Polyphosphate kinase C-terminal domain 2 LPH48_10225 PF17941 Polyphosphate kinase C-terminal domain 1 LPH48_10225 PF02503 Polyphosphate kinase middle domain LPH48_10230 PF11808 Phosphate regulon sensor protein PhoR LPH48_10230 PF00989 PAS fold LPH48_10230 PF00512 His Kinase A (phospho-acceptor) domain LPH48_10230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_10235 PF00486 Transcriptional regulatory protein, C terminal LPH48_10235 PF00072 Response regulator receiver domain LPH48_10240 PF13181 Tetratricopeptide repeat LPH48_10240 PF01435 Peptidase family M48 LPH48_10245 PF00462 Glutaredoxin LPH48_10250 PF00180 Isocitrate/isopropylmalate dehydrogenase LPH48_10260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LPH48_10260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LPH48_10270 PF00037 4Fe-4S binding domain LPH48_10270 PF11953 Domain of unknown function (DUF3470) LPH48_10280 PF01106 NifU-like domain LPH48_10285 PF01329 Pterin 4 alpha carbinolamine dehydratase LPH48_10300 PF00849 RNA pseudouridylate synthase LPH48_10300 PF01479 S4 domain LPH48_10305 PF00575 S1 RNA binding domain LPH48_10305 PF10150 Ribonuclease E/G family LPH48_10305 PF12111 Polyribonucleotide phosphorylase C terminal LPH48_10310 PF00072 Response regulator receiver domain LPH48_10310 PF00196 Bacterial regulatory proteins, luxR family LPH48_10315 PF17773 UPF0176 acylphosphatase like domain LPH48_10325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LPH48_10325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LPH48_10330 PF00545 ribonuclease LPH48_10340 PF00005 ABC transporter LPH48_10340 PF16326 ABC transporter C-terminal domain LPH48_10340 PF12848 ABC transporter LPH48_10345 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LPH48_10350 PF00313 'Cold-shock' DNA-binding domain LPH48_10360 PF01435 Peptidase family M48 LPH48_10365 PF03143 Elongation factor Tu C-terminal domain LPH48_10365 PF03144 Elongation factor Tu domain 2 LPH48_10365 PF00009 Elongation factor Tu GTP binding domain LPH48_10370 PF00009 Elongation factor Tu GTP binding domain LPH48_10370 PF14492 Elongation Factor G, domain II LPH48_10370 PF03764 Elongation factor G, domain IV LPH48_10370 PF03144 Elongation factor Tu domain 2 LPH48_10370 PF00679 Elongation factor G C-terminus LPH48_10375 PF00177 Ribosomal protein S7p/S5e LPH48_10380 PF00164 Ribosomal protein S12/S23 LPH48_10385 PF04983 RNA polymerase Rpb1, domain 3 LPH48_10385 PF04998 RNA polymerase Rpb1, domain 5 LPH48_10385 PF04997 RNA polymerase Rpb1, domain 1 LPH48_10385 PF00623 RNA polymerase Rpb1, domain 2 LPH48_10385 PF05000 RNA polymerase Rpb1, domain 4 LPH48_10390 PF04563 RNA polymerase beta subunit LPH48_10390 PF04561 RNA polymerase Rpb2, domain 2 LPH48_10390 PF04565 RNA polymerase Rpb2, domain 3 LPH48_10390 PF10385 RNA polymerase beta subunit external 1 domain LPH48_10390 PF00562 RNA polymerase Rpb2, domain 6 LPH48_10390 PF04560 RNA polymerase Rpb2, domain 7 LPH48_10395 PF00542 Ribosomal protein L7/L12 C-terminal domain LPH48_10395 PF16320 Ribosomal protein L7/L12 dimerisation domain LPH48_10400 PF00466 Ribosomal protein L10 LPH48_10405 PF00687 Ribosomal protein L1p/L10e family LPH48_10410 PF03946 Ribosomal protein L11, N-terminal domain LPH48_10410 PF00298 Ribosomal protein L11, RNA binding domain LPH48_10415 PF00467 KOW motif LPH48_10415 PF02357 Transcription termination factor nusG LPH48_10420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LPH48_10430 PF00009 Elongation factor Tu GTP binding domain LPH48_10430 PF03144 Elongation factor Tu domain 2 LPH48_10430 PF03143 Elongation factor Tu C-terminal domain LPH48_10450 PF06071 Protein of unknown function (DUF933) LPH48_10450 PF01926 50S ribosome-binding GTPase LPH48_10455 PF01195 Peptidyl-tRNA hydrolase LPH48_10460 PF01386 Ribosomal L25p family LPH48_10460 PF14693 Ribosomal protein TL5, C-terminal domain LPH48_10465 PF14572 Phosphoribosyl synthetase-associated domain LPH48_10465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LPH48_10475 PF08544 GHMP kinases C terminal LPH48_10475 PF00288 GHMP kinases N terminal domain LPH48_10480 PF03550 Outer membrane lipoprotein LolB LPH48_10490 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LPH48_10490 PF01488 Shikimate / quinate 5-dehydrogenase LPH48_10490 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LPH48_10495 PF00472 RF-1 domain LPH48_10495 PF03462 PCRF domain LPH48_10505 PF02926 THUMP domain LPH48_10505 PF01170 Putative RNA methylase family UPF0020 LPH48_10505 PF10672 S-adenosylmethionine-dependent methyltransferase LPH48_10570 PF00497 Bacterial extracellular solute-binding proteins, family 3 LPH48_10575 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_10580 PF00005 ABC transporter LPH48_10585 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_10590 PF13361 UvrD-like helicase C-terminal domain LPH48_10590 PF00580 UvrD/REP helicase N-terminal domain LPH48_10590 PF12705 PD-(D/E)XK nuclease superfamily LPH48_10600 PF01914 MarC family integral membrane protein LPH48_10605 PF00462 Glutaredoxin LPH48_10610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LPH48_10610 PF02222 ATP-grasp domain LPH48_10615 PF00731 AIR carboxylase LPH48_10635 PF07732 Multicopper oxidase LPH48_10635 PF07731 Multicopper oxidase LPH48_10645 PF13361 UvrD-like helicase C-terminal domain LPH48_10645 PF00580 UvrD/REP helicase N-terminal domain LPH48_10655 PF04349 Periplasmic glucan biosynthesis protein, MdoG LPH48_10660 PF01343 Peptidase family S49 LPH48_10665 PF01554 MatE LPH48_10680 PF00270 DEAD/DEAH box helicase LPH48_10680 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LPH48_10680 PF00271 Helicase conserved C-terminal domain LPH48_10680 PF17764 3′ DNA-binding domain (3′BD) LPH48_10680 PF18074 Primosomal protein N C-terminal domain LPH48_10685 PF00140 Sigma-70 factor, region 1.2 LPH48_10685 PF04545 Sigma-70, region 4 LPH48_10685 PF04542 Sigma-70 region 2 LPH48_10690 PF03167 Uracil DNA glycosylase superfamily LPH48_10695 PF00072 Response regulator receiver domain LPH48_10695 PF01339 CheB methylesterase LPH48_10700 PF18075 FtsX extracellular domain LPH48_10705 PF00005 ABC transporter LPH48_10710 PF00271 Helicase conserved C-terminal domain LPH48_10710 PF12300 ATP-dependent RNA helicase RhlB LPH48_10710 PF00270 DEAD/DEAH box helicase LPH48_10715 PF00085 Thioredoxin LPH48_10720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LPH48_10720 PF07498 Rho termination factor, N-terminal domain LPH48_10720 PF07497 Rho termination factor, RNA-binding domain LPH48_10725 PF03971 Monomeric isocitrate dehydrogenase LPH48_10730 PF09704 CRISPR-associated protein (Cas_Cas5) LPH48_10745 PF13180 PDZ domain LPH48_10745 PF03572 Peptidase family S41 LPH48_10750 PF01551 Peptidase family M23 LPH48_10760 PF00150 Cellulase (glycosyl hydrolase family 5) LPH48_10780 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LPH48_10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH48_10785 PF04898 Glutamate synthase central domain LPH48_10785 PF01645 Conserved region in glutamate synthase LPH48_10785 PF01493 GXGXG motif LPH48_10785 PF00310 Glutamine amidotransferases class-II LPH48_10795 PF03807 NADP oxidoreductase coenzyme F420-dependent LPH48_10795 PF14748 Pyrroline-5-carboxylate reductase dimerisation LPH48_10880 PF13332 Hemagglutinin repeat LPH48_10880 PF04829 Pre-toxin domain with VENN motif LPH48_10880 PF05860 haemagglutination activity domain LPH48_10885 PF04829 Pre-toxin domain with VENN motif LPH48_10885 PF05860 haemagglutination activity domain LPH48_10885 PF13332 Hemagglutinin repeat LPH48_10885 PF13018 Extended Signal Peptide of Type V secretion system LPH48_10925 PF12008 Type I restriction and modification enzyme - subunit R C terminal LPH48_10925 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH48_10925 PF18766 SWI2/SNF2 ATPase LPH48_10930 PF01420 Type I restriction modification DNA specificity domain LPH48_10940 PF02384 N-6 DNA Methylase LPH48_10940 PF12161 HsdM N-terminal domain LPH48_11025 PF11867 Domain of unknown function (DUF3387) LPH48_11025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LPH48_11025 PF18766 SWI2/SNF2 ATPase LPH48_11030 PF01420 Type I restriction modification DNA specificity domain LPH48_11035 PF02384 N-6 DNA Methylase LPH48_11040 PF02384 N-6 DNA Methylase LPH48_11150 PF01638 HxlR-like helix-turn-helix LPH48_11155 PF00106 short chain dehydrogenase LPH48_11175 PF00905 Penicillin binding protein transpeptidase domain LPH48_11175 PF00912 Transglycosylase LPH48_11175 PF14814 Bifunctional transglycosylase second domain LPH48_11185 PF04851 Type III restriction enzyme, res subunit LPH48_11185 PF13307 Helicase C-terminal domain LPH48_11195 PF00484 Carbonic anhydrase LPH48_11200 PF00534 Glycosyl transferases group 1 LPH48_11205 PF01522 Polysaccharide deacetylase LPH48_11215 PF09383 NIL domain LPH48_11215 PF00005 ABC transporter LPH48_11220 PF00528 Binding-protein-dependent transport system inner membrane component LPH48_11225 PF03180 NLPA lipoprotein LPH48_11240 PF00364 Biotin-requiring enzyme LPH48_11240 PF02817 e3 binding domain LPH48_11240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LPH48_11245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LPH48_11245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LPH48_11255 PF01545 Cation efflux family LPH48_11265 PF01053 Cys/Met metabolism PLP-dependent enzyme LPH48_11270 PF00561 alpha/beta hydrolase fold LPH48_11275 PF01551 Peptidase family M23 LPH48_11285 PF01975 Survival protein SurE LPH48_11300 PF01551 Peptidase family M23 LPH48_11300 PF01476 LysM domain LPH48_11315 PF01168 Alanine racemase, N-terminal domain LPH48_11315 PF00842 Alanine racemase, C-terminal domain LPH48_11320 PF01266 FAD dependent oxidoreductase LPH48_11330 PF01641 SelR domain LPH48_11340 PF02838 Glycosyl hydrolase family 20, domain 2 LPH48_11340 PF00728 Glycosyl hydrolase family 20, catalytic domain LPH48_11340 PF07691 PA14 domain LPH48_11350 PF01915 Glycosyl hydrolase family 3 C-terminal domain LPH48_11350 PF00933 Glycosyl hydrolase family 3 N terminal domain LPH48_11350 PF14310 Fibronectin type III-like domain LPH48_11350 PF07691 PA14 domain LPH48_11365 PF07971 Glycosyl hydrolase family 92 LPH48_11365 PF17678 Glycosyl hydrolase family 92 N-terminal domain LPH48_11370 PF01301 Glycosyl hydrolases family 35 LPH48_11375 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LPH48_11380 PF09312 SurA N-terminal domain LPH48_11380 PF00639 PPIC-type PPIASE domain LPH48_11385 PF04453 LPS transport system D LPH48_11395 PF01494 FAD binding domain LPH48_11400 PF01494 FAD binding domain LPH48_11405 PF12833 Helix-turn-helix domain LPH48_11405 PF06719 AraC-type transcriptional regulator N-terminus LPH48_11410 PF02525 Flavodoxin-like fold LPH48_11420 PF03466 LysR substrate binding domain LPH48_11420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LPH48_11425 PF10414 Sirohaem synthase dimerisation region LPH48_11425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LPH48_11425 PF14824 Sirohaem biosynthesis protein central LPH48_11430 PF00291 Pyridoxal-phosphate dependent enzyme LPH48_11440 PF00274 Fructose-bisphosphate aldolase class-I LPH48_11450 PF00224 Pyruvate kinase, barrel domain LPH48_11450 PF02887 Pyruvate kinase, alpha/beta domain LPH48_11455 PF00162 Phosphoglycerate kinase LPH48_11470 PF00749 tRNA synthetases class I (E and Q), catalytic domain LPH48_11475 PF01475 Ferric uptake regulator family LPH48_11490 PF00553 Cellulose binding domain LPH48_11490 PF00150 Cellulase (glycosyl hydrolase family 5) LPH48_11500 PF05193 Peptidase M16 inactive domain LPH48_11500 PF00675 Insulinase (Peptidase family M16) LPH48_11515 PF03330 Lytic transglycolase LPH48_11520 PF07516 SecA Wing and Scaffold domain LPH48_11520 PF01043 SecA preprotein cross-linking domain LPH48_11520 PF02810 SEC-C motif LPH48_11520 PF07517 SecA DEAD-like domain LPH48_11525 PF01551 Peptidase family M23 LPH48_11525 PF08525 Opacity-associated protein A N-terminal motif LPH48_11525 PF01476 LysM domain LPH48_11535 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LPH48_11540 PF12327 FtsZ family, C-terminal domain LPH48_11540 PF00091 Tubulin/FtsZ family, GTPase domain LPH48_11545 PF02491 SHS2 domain inserted in FTSA LPH48_11550 PF08478 POTRA domain, FtsQ-type LPH48_11550 PF03799 Cell division protein FtsQ LPH48_11555 PF07478 D-ala D-ala ligase C-terminus LPH48_11560 PF02875 Mur ligase family, glutamate ligase domain LPH48_11560 PF08245 Mur ligase middle domain LPH48_11560 PF01225 Mur ligase family, catalytic domain LPH48_11565 PF04101 Glycosyltransferase family 28 C-terminal domain LPH48_11565 PF03033 Glycosyltransferase family 28 N-terminal domain LPH48_11570 PF01098 Cell cycle protein LPH48_11575 PF00953 Glycosyl transferase family 4 LPH48_11580 PF02875 Mur ligase family, glutamate ligase domain LPH48_11580 PF08245 Mur ligase middle domain LPH48_11580 PF01225 Mur ligase family, catalytic domain LPH48_11585 PF08245 Mur ligase middle domain LPH48_11585 PF02875 Mur ligase family, glutamate ligase domain LPH48_11585 PF01225 Mur ligase family, catalytic domain LPH48_11590 PF00905 Penicillin binding protein transpeptidase domain LPH48_11590 PF03717 Penicillin-binding Protein dimerisation domain LPH48_11595 PF04999 Cell division protein FtsL LPH48_11600 PF01795 MraW methylase family LPH48_11605 PF02381 MraZ protein, putative antitoxin-like LPH48_11610 PF03600 Citrate transporter LPH48_11610 PF02080 TrkA-C domain LPH48_11615 PF02390 Putative methyltransferase LPH48_11620 PF05690 Thiazole biosynthesis protein ThiG LPH48_11630 PF03797 Autotransporter beta-domain LPH48_11630 PF00657 GDSL-like Lipase/Acylhydrolase LPH48_11660 PF07977 FabA-like domain LPH48_11685 PF00692 dUTPase LPH48_11695 PF08676 MutL C terminal dimerisation domain LPH48_11695 PF01119 DNA mismatch repair protein, C-terminal domain LPH48_11700 PF01520 N-acetylmuramoyl-L-alanine amidase LPH48_11700 PF11741 AMIN domain LPH48_11705 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LPH48_11710 PF03853 YjeF-related protein N-terminus LPH48_11710 PF01256 Carbohydrate kinase LPH48_11715 PF13742 OB-fold nucleic acid binding domain LPH48_11715 PF02601 Exonuclease VII, large subunit LPH48_11730 PF01612 3'-5' exonuclease LPH48_11730 PF00570 HRDC domain LPH48_11760 PF00216 Bacterial DNA-binding protein LPH48_11765 PF03483 B3/4 domain LPH48_11765 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LPH48_11765 PF01588 Putative tRNA binding domain LPH48_11765 PF03484 tRNA synthetase B5 domain LPH48_11765 PF03147 Ferredoxin-fold anticodon binding domain LPH48_11770 PF01409 tRNA synthetases class II core domain (F) LPH48_11770 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LPH48_11775 PF00453 Ribosomal protein L20 LPH48_11780 PF01632 Ribosomal protein L35 LPH48_11785 PF00707 Translation initiation factor IF-3, C-terminal domain LPH48_11785 PF05198 Translation initiation factor IF-3, N-terminal domain LPH48_11790 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LPH48_11790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LPH48_11790 PF02824 TGS domain LPH48_11790 PF03129 Anticodon binding domain LPH48_11800 PF18030 RimK PreATP-grasp domain LPH48_11800 PF08443 RimK-like ATP-grasp domain LPH48_11805 PF00486 Transcriptional regulatory protein, C terminal LPH48_11805 PF00072 Response regulator receiver domain LPH48_11810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_11810 PF00512 His Kinase A (phospho-acceptor) domain LPH48_11810 PF11808 Phosphate regulon sensor protein PhoR LPH48_11810 PF00989 PAS fold LPH48_11815 PF01121 Dephospho-CoA kinase LPH48_11820 PF06750 Bacterial Peptidase A24 N-terminal domain LPH48_11820 PF01478 Type IV leader peptidase family LPH48_11825 PF00482 Type II secretion system (T2SS), protein F LPH48_11830 PF07963 Prokaryotic N-terminal methylation motif LPH48_11830 PF00114 Pilin (bacterial filament) LPH48_11840 PF07963 Prokaryotic N-terminal methylation motif LPH48_11840 PF00114 Pilin (bacterial filament) LPH48_11845 PF07963 Prokaryotic N-terminal methylation motif LPH48_11845 PF00114 Pilin (bacterial filament) LPH48_11855 PF00437 Type II/IV secretion system protein LPH48_11855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LPH48_11860 PF02954 Bacterial regulatory protein, Fis family LPH48_11860 PF00072 Response regulator receiver domain LPH48_11860 PF00158 Sigma-54 interaction domain LPH48_11865 PF00512 His Kinase A (phospho-acceptor) domain LPH48_11865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LPH48_11870 PF08442 ATP-grasp domain LPH48_11870 PF00549 CoA-ligase LPH48_11875 PF02629 CoA binding domain LPH48_11875 PF00549 CoA-ligase LPH48_11880 PF01926 50S ribosome-binding GTPase LPH48_11880 PF12631 MnmE helical domain LPH48_11880 PF10396 GTP-binding protein TrmE N-terminus LPH48_11890 PF02096 60Kd inner membrane protein LPH48_11890 PF14849 YidC periplasmic domain LPH48_11895 PF00825 Ribonuclease P LPH48_11900 PF00468 Ribosomal protein L34