locus-tag class description CEW88_00005 PF01565 FAD binding domain CEW88_00005 PF02913 FAD linked oxidases, C-terminal domain CEW88_00010 PF01565 FAD binding domain CEW88_00015 PF13183 4Fe-4S dicluster domain CEW88_00015 PF02754 Cysteine-rich domain CEW88_00020 PF00089 Trypsin CEW88_00025 PF00089 Trypsin CEW88_00030 PF00011 Hsp20/alpha crystallin family CEW88_00035 PF00107 Zinc-binding dehydrogenase CEW88_00035 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_00040 PF03466 LysR substrate binding domain CEW88_00040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_00055 PF00171 Aldehyde dehydrogenase family CEW88_00060 PF07509 Protein of unknown function (DUF1523) CEW88_00075 PF13247 4Fe-4S dicluster domain CEW88_00075 PF12800 4Fe-4S binding domain CEW88_00080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CEW88_00080 PF01568 Molydopterin dinucleotide binding domain CEW88_00080 PF00384 Molybdopterin oxidoreductase CEW88_00095 PF00534 Glycosyl transferases group 1 CEW88_00095 PF13439 Glycosyltransferase Family 4 CEW88_00100 PF01757 Acyltransferase family CEW88_00105 PF05199 GMC oxidoreductase CEW88_00110 PF00106 short chain dehydrogenase CEW88_00120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_00120 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_00130 PF00534 Glycosyl transferases group 1 CEW88_00130 PF13439 Glycosyltransferase Family 4 CEW88_00135 PF00535 Glycosyl transferase family 2 CEW88_00140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_00140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_00145 PF13614 AAA domain CEW88_00155 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CEW88_00155 PF01648 4'-phosphopantetheinyl transferase superfamily CEW88_00160 PF00668 Condensation domain CEW88_00160 PF13193 AMP-binding enzyme C-terminal domain CEW88_00160 PF00550 Phosphopantetheine attachment site CEW88_00160 PF00501 AMP-binding enzyme CEW88_00170 PF00550 Phosphopantetheine attachment site CEW88_00170 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_00170 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_00170 PF16197 Ketoacyl-synthetase C-terminal extension CEW88_00170 PF00668 Condensation domain CEW88_00170 PF00698 Acyl transferase domain CEW88_00185 PF00534 Glycosyl transferases group 1 CEW88_00185 PF13439 Glycosyltransferase Family 4 CEW88_00195 PF08502 LeuA allosteric (dimerisation) domain CEW88_00195 PF00682 HMGL-like CEW88_00205 PF04321 RmlD substrate binding domain CEW88_00210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_00210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_00225 PF01380 SIS domain CEW88_00225 PF00571 CBS domain CEW88_00230 PF02348 Cytidylyltransferase CEW88_00235 PF00793 DAHP synthetase I family CEW88_00240 PF04172 LrgB-like family CEW88_00245 PF03788 LrgA family CEW88_00270 PF00814 Glycoprotease family CEW88_00275 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CEW88_00275 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CEW88_00300 PF01235 Sodium:alanine symporter family CEW88_00310 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CEW88_00310 PF05221 S-adenosyl-L-homocysteine hydrolase CEW88_00320 PF01966 HD domain CEW88_00330 PF00072 Response regulator receiver domain CEW88_00335 PF02630 SCO1/SenC CEW88_00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_00340 PF00512 His Kinase A (phospho-acceptor) domain CEW88_00350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CEW88_00355 PF01636 Phosphotransferase enzyme family CEW88_00360 PF12804 MobA-like NTP transferase domain CEW88_00365 PF12705 PD-(D/E)XK nuclease superfamily CEW88_00370 PF12705 PD-(D/E)XK nuclease superfamily CEW88_00370 PF00580 UvrD/REP helicase N-terminal domain CEW88_00370 PF13361 UvrD-like helicase C-terminal domain CEW88_00375 PF00085 Thioredoxin CEW88_00385 PF00227 Proteasome subunit CEW88_00390 PF07724 AAA domain (Cdc48 subfamily) CEW88_00390 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_00405 PF00561 alpha/beta hydrolase fold CEW88_00420 PF00795 Carbon-nitrogen hydrolase CEW88_00425 PF00462 Glutaredoxin CEW88_00435 PF08241 Methyltransferase domain CEW88_00440 PF00762 Ferrochelatase CEW88_00450 PF03734 L,D-transpeptidase catalytic domain CEW88_00460 PF03734 L,D-transpeptidase catalytic domain CEW88_00465 PF05958 tRNA (Uracil-5-)-methyltransferase CEW88_00470 PF00664 ABC transporter transmembrane region CEW88_00470 PF00005 ABC transporter CEW88_00475 PF00664 ABC transporter transmembrane region CEW88_00475 PF00005 ABC transporter CEW88_00485 PF01743 Poly A polymerase head domain CEW88_00485 PF13735 tRNA nucleotidyltransferase domain 2 putative CEW88_00485 PF12627 Probable RNA and SrmB- binding site of polymerase A CEW88_00490 PF00293 NUDIX domain CEW88_00495 PF01430 Hsp33 protein CEW88_00500 PF00293 NUDIX domain CEW88_00505 PF00072 Response regulator receiver domain CEW88_00505 PF00486 Transcriptional regulatory protein, C terminal CEW88_00515 PF00585 C-terminal regulatory domain of Threonine dehydratase CEW88_00515 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_00525 PF00764 Arginosuccinate synthase CEW88_00535 PF01625 Peptide methionine sulfoxide reductase CEW88_00540 PF01467 Cytidylyltransferase-like CEW88_00540 PF00294 pfkB family carbohydrate kinase CEW88_00545 PF03949 Malic enzyme, NAD binding domain CEW88_00545 PF01515 Phosphate acetyl/butaryl transferase CEW88_00545 PF00390 Malic enzyme, N-terminal domain CEW88_00550 PF05192 MutS domain III CEW88_00550 PF05188 MutS domain II CEW88_00550 PF00488 MutS domain V CEW88_00550 PF01624 MutS domain I CEW88_00550 PF05190 MutS family domain IV CEW88_00555 PF01025 GrpE CEW88_00560 PF01628 HrcA protein C terminal domain CEW88_00565 PF03725 3' exoribonuclease family, domain 2 CEW88_00565 PF01138 3' exoribonuclease family, domain 1 CEW88_00570 PF01725 Ham1 family CEW88_00575 PF04055 Radical SAM superfamily CEW88_00575 PF06969 HemN C-terminal domain CEW88_00580 PF02195 ParB-like nuclease domain CEW88_00580 PF17762 HTH domain found in ParB protein CEW88_00585 PF13614 AAA domain CEW88_00590 PF02527 rRNA small subunit methyltransferase G CEW88_00595 PF13932 GidA associated domain CEW88_00595 PF01134 Glucose inhibited division protein A CEW88_00600 PF01926 50S ribosome-binding GTPase CEW88_00600 PF12631 MnmE helical domain CEW88_00600 PF10396 GTP-binding protein TrmE N-terminus CEW88_00605 PF07498 Rho termination factor, N-terminal domain CEW88_00605 PF07497 Rho termination factor, RNA-binding domain CEW88_00605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_00610 PF02545 Maf-like protein CEW88_00615 PF08501 Shikimate dehydrogenase substrate binding domain CEW88_00615 PF01488 Shikimate / quinate 5-dehydrogenase CEW88_00615 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CEW88_00620 PF01121 Dephospho-CoA kinase CEW88_00625 PF00929 Exonuclease CEW88_00630 PF02556 Preprotein translocase subunit SecB CEW88_00635 PF04186 FxsA cytoplasmic membrane protein CEW88_00650 PF01713 Smr domain CEW88_00655 PF00293 NUDIX domain CEW88_00665 PF10531 SLBB domain CEW88_00665 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CEW88_00665 PF02563 Polysaccharide biosynthesis/export protein CEW88_00670 PF02397 Bacterial sugar transferase CEW88_00680 PF06082 Exopolysaccharide biosynthesis protein YbjH CEW88_00685 PF00691 OmpA family CEW88_00685 PF13677 Membrane MotB of proton-channel complex MotA/MotB CEW88_00690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_00690 PF07559 Flagellar basal body protein FlaE CEW88_00690 PF00460 Flagella basal body rod protein CEW88_00705 PF02119 Flagellar P-ring protein CEW88_00710 PF01618 MotA/TolQ/ExbB proton channel family CEW88_00725 PF00771 FHIPEP family CEW88_00735 PF01312 FlhB HrpN YscU SpaS Family CEW88_00750 PF02107 Flagellar L-ring protein CEW88_00760 PF00460 Flagella basal body rod protein CEW88_00760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_00765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_00765 PF00460 Flagella basal body rod protein CEW88_00770 PF01313 Bacterial export proteins, family 3 CEW88_00775 PF02049 Flagellar hook-basal body complex protein FliE CEW88_00780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_00790 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_00790 PF18269 T3SS EscN ATPase C-terminal domain CEW88_00790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_00800 PF07378 Flagellar protein FlbT CEW88_00810 PF00700 Bacterial flagellin C-terminal helical region CEW88_00810 PF00669 Bacterial flagellin N-terminal helical region CEW88_00835 PF03109 ABC1 family CEW88_00840 PF01209 ubiE/COQ5 methyltransferase family CEW88_00845 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CEW88_00845 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CEW88_00845 PF06827 Zinc finger found in FPG and IleRS CEW88_00850 PF00378 Enoyl-CoA hydratase/isomerase CEW88_00860 PF01649 Ribosomal protein S20 CEW88_00865 PF00308 Bacterial dnaA protein CEW88_00865 PF11638 DnaA N-terminal domain CEW88_00865 PF08299 Bacterial dnaA protein helix-turn-helix CEW88_00870 PF02767 DNA polymerase III beta subunit, central domain CEW88_00870 PF02768 DNA polymerase III beta subunit, C-terminal domain CEW88_00870 PF00712 DNA polymerase III beta subunit, N-terminal domain CEW88_00875 PF02463 RecF/RecN/SMC N terminal domain CEW88_00880 PF00204 DNA gyrase B CEW88_00880 PF00986 DNA gyrase B subunit, carboxyl terminus CEW88_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_00880 PF01751 Toprim domain CEW88_00890 PF04321 RmlD substrate binding domain CEW88_00930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_00935 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_00940 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_00940 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_00945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_00945 PF00005 ABC transporter CEW88_00955 PF00892 EamA-like transporter family CEW88_00960 PF00180 Isocitrate/isopropylmalate dehydrogenase CEW88_00975 PF01144 Coenzyme A transferase CEW88_00980 PF01144 Coenzyme A transferase CEW88_00985 PF00694 Aconitase C-terminal domain CEW88_00990 PF00330 Aconitase family (aconitate hydratase) CEW88_01000 PF12795 Mechanosensitive ion channel porin domain CEW88_01000 PF00924 Mechanosensitive ion channel CEW88_01000 PF12794 Mechanosensitive ion channel inner membrane domain 1 CEW88_01005 PF02803 Thiolase, C-terminal domain CEW88_01005 PF00108 Thiolase, N-terminal domain CEW88_01015 PF00072 Response regulator receiver domain CEW88_01015 PF00989 PAS fold CEW88_01015 PF01627 Hpt domain CEW88_01015 PF18415 Histidine kinase receptor ArcB trans-membrane domain CEW88_01015 PF00512 His Kinase A (phospho-acceptor) domain CEW88_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_01020 PF03883 Peroxide stress protein YaaA CEW88_01025 PF00271 Helicase conserved C-terminal domain CEW88_01025 PF00570 HRDC domain CEW88_01025 PF16124 RecQ zinc-binding CEW88_01025 PF09382 RQC domain CEW88_01025 PF00270 DEAD/DEAH box helicase CEW88_01030 PF00472 RF-1 domain CEW88_01035 PF02592 Putative vitamin uptake transporter CEW88_01045 PF03411 Penicillin-insensitive murein endopeptidase CEW88_01065 PF00795 Carbon-nitrogen hydrolase CEW88_01070 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_01075 PF03466 LysR substrate binding domain CEW88_01080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_01080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_01080 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_01085 PF02515 CoA-transferase family III CEW88_01095 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CEW88_01095 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CEW88_01110 PF14698 Argininosuccinate lyase C-terminal CEW88_01110 PF00206 Lyase CEW88_01115 PF08534 Redoxin CEW88_01130 PF02153 Prephenate dehydrogenase CEW88_01135 PF00155 Aminotransferase class I and II CEW88_01140 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CEW88_01140 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CEW88_01145 PF00857 Isochorismatase family CEW88_01155 PF00813 FliP family CEW88_01160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CEW88_01170 PF08345 Flagellar M-ring protein C-terminal CEW88_01170 PF01514 Secretory protein of YscJ/FliF family CEW88_01190 PF00085 Thioredoxin CEW88_01195 PF17969 L,D-transpeptidase C-terminal domain CEW88_01195 PF03734 L,D-transpeptidase catalytic domain CEW88_01210 PF00005 ABC transporter CEW88_01220 PF00459 Inositol monophosphatase family CEW88_01225 PF02347 Glycine cleavage system P-protein CEW88_01230 PF01597 Glycine cleavage H-protein CEW88_01235 PF08669 Glycine cleavage T-protein C-terminal barrel domain CEW88_01235 PF01571 Aminomethyltransferase folate-binding domain CEW88_01240 PF02082 Transcriptional regulator CEW88_01250 PF10011 Predicted membrane protein (DUF2254) CEW88_01255 PF00749 tRNA synthetases class I (E and Q), catalytic domain CEW88_01260 PF00294 pfkB family carbohydrate kinase CEW88_01270 PF18331 PKHD-type hydroxylase C-terminal domain CEW88_01270 PF13640 2OG-Fe(II) oxygenase superfamily CEW88_01285 PF02540 NAD synthase CEW88_01285 PF00795 Carbon-nitrogen hydrolase CEW88_01310 PF08402 TOBE domain CEW88_01310 PF00005 ABC transporter CEW88_01320 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_01330 PF01177 Asp/Glu/Hydantoin racemase CEW88_01335 PF10414 Sirohaem synthase dimerisation region CEW88_01335 PF14824 Sirohaem biosynthesis protein central CEW88_01335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_01340 PF01568 Molydopterin dinucleotide binding domain CEW88_01340 PF00384 Molybdopterin oxidoreductase CEW88_01340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CEW88_01340 PF04324 BFD-like [2Fe-2S] binding domain CEW88_01345 PF00355 Rieske [2Fe-2S] domain CEW88_01350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CEW88_01350 PF04324 BFD-like [2Fe-2S] binding domain CEW88_01350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CEW88_01350 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_01350 PF18267 Rubredoxin NAD+ reductase C-terminal domain CEW88_01355 PF00005 ABC transporter CEW88_01360 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_01370 PF00005 ABC transporter CEW88_01375 PF03861 ANTAR domain CEW88_01375 PF08376 Nitrate and nitrite sensing CEW88_01380 PF01266 FAD dependent oxidoreductase CEW88_01385 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_01390 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_01395 PF00005 ABC transporter CEW88_01395 PF08402 TOBE domain CEW88_01400 PF13416 Bacterial extracellular solute-binding protein CEW88_01405 PF07729 FCD domain CEW88_01405 PF00392 Bacterial regulatory proteins, gntR family CEW88_01410 PF00202 Aminotransferase class-III CEW88_01415 PF00909 Ammonium Transporter Family CEW88_01420 PF00543 Nitrogen regulatory protein P-II CEW88_01425 PF00905 Penicillin binding protein transpeptidase domain CEW88_01425 PF00912 Transglycosylase CEW88_01430 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CEW88_01435 PF00579 tRNA synthetases class I (W and Y) CEW88_01445 PF01145 SPFH domain / Band 7 family CEW88_01460 PF00817 impB/mucB/samB family CEW88_01460 PF11799 impB/mucB/samB family C-terminal domain CEW88_01475 PF02646 RmuC family CEW88_01480 PF08676 MutL C terminal dimerisation domain CEW88_01480 PF01119 DNA mismatch repair protein, C-terminal domain CEW88_01485 PF04073 Aminoacyl-tRNA editing domain CEW88_01490 PF13811 Domain of unknown function (DUF4186) CEW88_01500 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CEW88_01500 PF02805 Metal binding domain of Ada CEW88_01500 PF12833 Helix-turn-helix domain CEW88_01500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CEW88_01510 PF07729 FCD domain CEW88_01510 PF00392 Bacterial regulatory proteins, gntR family CEW88_01515 PF02391 MoaE protein CEW88_01525 PF01066 CDP-alcohol phosphatidyltransferase CEW88_01530 PF11967 Recombination protein O N terminal CEW88_01530 PF02565 Recombination protein O C terminal CEW88_01545 PF01926 50S ribosome-binding GTPase CEW88_01545 PF07650 KH domain CEW88_01550 PF00892 EamA-like transporter family CEW88_01555 PF00035 Double-stranded RNA binding motif CEW88_01555 PF14622 Ribonuclease-III-like CEW88_01560 PF10502 Signal peptidase, peptidase S26 CEW88_01565 PF01648 4'-phosphopantetheinyl transferase superfamily CEW88_01570 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CEW88_01580 PF02824 TGS domain CEW88_01580 PF13291 ACT domain CEW88_01580 PF04607 Region found in RelA / SpoT proteins CEW88_01585 PF01192 RNA polymerase Rpb6 CEW88_01590 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CEW88_01605 PF02401 LytB protein CEW88_01615 PF00075 RNase H CEW88_01620 PF03458 UPF0126 domain CEW88_01625 PF00155 Aminotransferase class I and II CEW88_01630 PF01327 Polypeptide deformylase CEW88_01635 PF01327 Polypeptide deformylase CEW88_01640 PF01327 Polypeptide deformylase CEW88_01645 PF02911 Formyl transferase, C-terminal domain CEW88_01645 PF00551 Formyl transferase CEW88_01655 PF13409 Glutathione S-transferase, N-terminal domain CEW88_01670 PF01425 Amidase CEW88_01675 PF01494 FAD binding domain CEW88_01690 PF00378 Enoyl-CoA hydratase/isomerase CEW88_01695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CEW88_01695 PF02203 Tar ligand binding domain homologue CEW88_01695 PF00672 HAMP domain CEW88_01700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CEW88_01705 PF13382 Adenine deaminase C-terminal domain CEW88_01705 PF01979 Amidohydrolase family CEW88_01725 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_01725 PF14602 Hexapeptide repeat of succinyl-transferase CEW88_01725 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CEW88_01730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_01735 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_01745 PF02719 Polysaccharide biosynthesis protein CEW88_01750 PF01118 Semialdehyde dehydrogenase, NAD binding domain CEW88_01750 PF02774 Semialdehyde dehydrogenase, dimerisation domain CEW88_01760 PF00484 Carbonic anhydrase CEW88_01770 PF00883 Cytosol aminopeptidase family, catalytic domain CEW88_01770 PF02789 Cytosol aminopeptidase family, N-terminal domain CEW88_01775 PF00877 NlpC/P60 family CEW88_01780 PF00491 Arginase family CEW88_01790 PF01966 HD domain CEW88_01800 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_01800 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_01800 PF01842 ACT domain CEW88_01805 PF00149 Calcineurin-like phosphoesterase CEW88_01810 PF00916 Sulfate permease family CEW88_01810 PF01740 STAS domain CEW88_01815 PF01197 Ribosomal protein L31 CEW88_01820 PF01245 Ribosomal protein L19 CEW88_01825 PF01746 tRNA (Guanine-1)-methyltransferase CEW88_01835 PF05239 PRC-barrel domain CEW88_01835 PF01782 RimM N-terminal domain CEW88_01845 PF00886 Ribosomal protein S16 CEW88_01870 PF02881 SRP54-type protein, helical bundle domain CEW88_01870 PF00448 SRP54-type protein, GTPase domain CEW88_01870 PF02978 Signal peptide binding domain CEW88_01900 PF00119 ATP synthase A chain CEW88_01905 PF00137 ATP synthase subunit C CEW88_01910 PF00430 ATP synthase B/B' CF(0) CEW88_01915 PF00430 ATP synthase B/B' CF(0) CEW88_01920 PF01883 Iron-sulfur cluster assembly protein CEW88_01920 PF10609 NUBPL iron-transfer P-loop NTPase CEW88_01935 PF02463 RecF/RecN/SMC N terminal domain CEW88_01940 PF02569 Pantoate-beta-alanine ligase CEW88_01945 PF02548 Ketopantoate hydroxymethyltransferase CEW88_01950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_01955 PF07687 Peptidase dimerisation domain CEW88_01955 PF01546 Peptidase family M20/M25/M40 CEW88_01965 PF04752 ChaC-like protein CEW88_01975 PF01389 OmpA-like transmembrane domain CEW88_01975 PF00691 OmpA family CEW88_01980 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_01980 PF10431 C-terminal, D2-small domain, of ClpB protein CEW88_01980 PF17871 AAA lid domain CEW88_01980 PF02861 Clp amino terminal domain, pathogenicity island component CEW88_01980 PF07724 AAA domain (Cdc48 subfamily) CEW88_01985 PF16123 Hydroxyacylglutathione hydrolase C-terminus CEW88_01985 PF00753 Metallo-beta-lactamase superfamily CEW88_01990 PF08241 Methyltransferase domain CEW88_01995 PF00213 ATP synthase delta (OSCP) subunit CEW88_02000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_02000 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_02000 PF00306 ATP synthase alpha/beta chain, C terminal domain CEW88_02005 PF00231 ATP synthase CEW88_02010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_02010 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_02015 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CEW88_02020 PF09458 H-type lectin domain CEW88_02035 PF14572 Phosphoribosyl synthetase-associated domain CEW88_02035 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CEW88_02045 PF02660 Glycerol-3-phosphate acyltransferase CEW88_02050 PF01979 Amidohydrolase family CEW88_02060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CEW88_02060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CEW88_02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_02070 PF14759 Reductase C-terminal CEW88_02075 PF00462 Glutaredoxin CEW88_02075 PF08534 Redoxin CEW88_02080 PF01329 Pterin 4 alpha carbinolamine dehydratase CEW88_02090 PF03009 Glycerophosphoryl diester phosphodiesterase family CEW88_02100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_02100 PF00529 HlyD membrane-fusion protein of T1SS CEW88_02105 PF00664 ABC transporter transmembrane region CEW88_02105 PF00005 ABC transporter CEW88_02110 PF04333 MlaA lipoprotein CEW88_02120 PF17871 AAA lid domain CEW88_02120 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_02120 PF07724 AAA domain (Cdc48 subfamily) CEW88_02120 PF02861 Clp amino terminal domain, pathogenicity island component CEW88_02120 PF10431 C-terminal, D2-small domain, of ClpB protein CEW88_02125 PF02469 Fasciclin domain CEW88_02130 PF01645 Conserved region in glutamate synthase CEW88_02135 PF00174 Oxidoreductase molybdopterin binding domain CEW88_02140 PF01794 Ferric reductase like transmembrane component CEW88_02190 PF00467 KOW motif CEW88_02190 PF02357 Transcription termination factor nusG CEW88_02195 PF00298 Ribosomal protein L11, RNA binding domain CEW88_02195 PF03946 Ribosomal protein L11, N-terminal domain CEW88_02200 PF00687 Ribosomal protein L1p/L10e family CEW88_02210 PF00466 Ribosomal protein L10 CEW88_02215 PF16320 Ribosomal protein L7/L12 dimerisation domain CEW88_02215 PF00542 Ribosomal protein L7/L12 C-terminal domain CEW88_02220 PF04563 RNA polymerase beta subunit CEW88_02220 PF04561 RNA polymerase Rpb2, domain 2 CEW88_02220 PF04565 RNA polymerase Rpb2, domain 3 CEW88_02220 PF10385 RNA polymerase beta subunit external 1 domain CEW88_02220 PF00562 RNA polymerase Rpb2, domain 6 CEW88_02220 PF04560 RNA polymerase Rpb2, domain 7 CEW88_02225 PF04983 RNA polymerase Rpb1, domain 3 CEW88_02225 PF05000 RNA polymerase Rpb1, domain 4 CEW88_02225 PF04998 RNA polymerase Rpb1, domain 5 CEW88_02225 PF00623 RNA polymerase Rpb1, domain 2 CEW88_02225 PF04997 RNA polymerase Rpb1, domain 1 CEW88_02240 PF00164 Ribosomal protein S12/S23 CEW88_02245 PF00177 Ribosomal protein S7p/S5e CEW88_02250 PF03144 Elongation factor Tu domain 2 CEW88_02250 PF00009 Elongation factor Tu GTP binding domain CEW88_02250 PF03764 Elongation factor G, domain IV CEW88_02250 PF14492 Elongation Factor G, domain II CEW88_02250 PF00679 Elongation factor G C-terminus CEW88_02255 PF00009 Elongation factor Tu GTP binding domain CEW88_02255 PF03143 Elongation factor Tu C-terminal domain CEW88_02255 PF03144 Elongation factor Tu domain 2 CEW88_02260 PF00338 Ribosomal protein S10p/S20e CEW88_02265 PF00297 Ribosomal protein L3 CEW88_02270 PF00573 Ribosomal protein L4/L1 family CEW88_02275 PF00276 Ribosomal protein L23 CEW88_02280 PF00181 Ribosomal Proteins L2, RNA binding domain CEW88_02280 PF03947 Ribosomal Proteins L2, C-terminal domain CEW88_02285 PF00203 Ribosomal protein S19 CEW88_02290 PF00237 Ribosomal protein L22p/L17e CEW88_02295 PF00189 Ribosomal protein S3, C-terminal domain CEW88_02295 PF07650 KH domain CEW88_02300 PF00252 Ribosomal protein L16p/L10e CEW88_02310 PF00831 Ribosomal L29 protein CEW88_02315 PF00366 Ribosomal protein S17 CEW88_02320 PF00238 Ribosomal protein L14p/L23e CEW88_02325 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CEW88_02325 PF00467 KOW motif CEW88_02330 PF00281 Ribosomal protein L5 CEW88_02330 PF00673 ribosomal L5P family C-terminus CEW88_02335 PF00253 Ribosomal protein S14p/S29e CEW88_02340 PF00410 Ribosomal protein S8 CEW88_02345 PF00347 Ribosomal protein L6 CEW88_02350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CEW88_02355 PF03719 Ribosomal protein S5, C-terminal domain CEW88_02355 PF00333 Ribosomal protein S5, N-terminal domain CEW88_02360 PF00327 Ribosomal protein L30p/L7e CEW88_02365 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CEW88_02370 PF00344 SecY translocase CEW88_02375 PF05191 Adenylate kinase, active site lid CEW88_02385 PF00416 Ribosomal protein S13/S18 CEW88_02390 PF00411 Ribosomal protein S11 CEW88_02395 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CEW88_02395 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CEW88_02395 PF01000 RNA polymerase Rpb3/RpoA insert domain CEW88_02400 PF01196 Ribosomal protein L17 CEW88_02405 PF00107 Zinc-binding dehydrogenase CEW88_02405 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_02410 PF07885 Ion channel CEW88_02425 PF00440 Bacterial regulatory proteins, tetR family CEW88_02435 PF01367 5'-3' exonuclease, C-terminal SAM fold CEW88_02435 PF01612 3'-5' exonuclease CEW88_02435 PF00476 DNA polymerase family A CEW88_02435 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CEW88_02440 PF00294 pfkB family carbohydrate kinase CEW88_02445 PF10576 Iron-sulfur binding domain of endonuclease III CEW88_02445 PF00633 Helix-hairpin-helix motif CEW88_02445 PF00730 HhH-GPD superfamily base excision DNA repair protein CEW88_02450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CEW88_02450 PF02805 Metal binding domain of Ada CEW88_02450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CEW88_02450 PF12833 Helix-turn-helix domain CEW88_02455 PF00691 OmpA family CEW88_02455 PF00223 Photosystem I psaA/psaB protein CEW88_02460 PF02397 Bacterial sugar transferase CEW88_02465 PF01612 3'-5' exonuclease CEW88_02465 PF00570 HRDC domain CEW88_02480 PF00005 ABC transporter CEW88_02485 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CEW88_02485 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CEW88_02490 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CEW88_02515 PF16363 GDP-mannose 4,6 dehydratase CEW88_02520 PF00483 Nucleotidyl transferase CEW88_02530 PF00459 Inositol monophosphatase family CEW88_02545 PF13532 2OG-Fe(II) oxygenase superfamily CEW88_02550 PF00012 Hsp70 protein CEW88_02555 PF00226 DnaJ domain CEW88_02555 PF01556 DnaJ C terminal domain CEW88_02555 PF00684 DnaJ central domain CEW88_02560 PF04002 RadC-like JAB domain CEW88_02565 PF12849 PBP superfamily domain CEW88_02575 PF01043 SecA preprotein cross-linking domain CEW88_02575 PF07516 SecA Wing and Scaffold domain CEW88_02575 PF02810 SEC-C motif CEW88_02575 PF07517 SecA DEAD-like domain CEW88_02585 PF01960 ArgJ family CEW88_02590 PF00293 NUDIX domain CEW88_02600 PF08364 Bacterial translation initiation factor IF-2 associated region CEW88_02600 PF04760 Translation initiation factor IF-2, N-terminal region CEW88_02600 PF11987 Translation-initiation factor 2 CEW88_02600 PF00009 Elongation factor Tu GTP binding domain CEW88_02610 PF00575 S1 RNA binding domain CEW88_02610 PF08529 NusA N-terminal domain CEW88_02610 PF13184 NusA-like KH domain CEW88_02615 PF17384 RimP C-terminal SH3 domain CEW88_02615 PF02576 RimP N-terminal domain CEW88_02620 PF15887 Putative zinc-binding metallo-peptidase CEW88_02620 PF10005 zinc-ribbon domain CEW88_02630 PF01047 MarR family CEW88_02640 PF08544 GHMP kinases C terminal CEW88_02645 PF00348 Polyprenyl synthetase CEW88_02665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_02675 PF02803 Thiolase, C-terminal domain CEW88_02675 PF00108 Thiolase, N-terminal domain CEW88_02685 PF00163 Ribosomal protein S4/S9 N-terminal domain CEW88_02685 PF01479 S4 domain CEW88_02690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CEW88_02690 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_02695 PF01180 Dihydroorotate dehydrogenase CEW88_02700 PF08362 YcdC-like protein, C-terminal region CEW88_02700 PF00440 Bacterial regulatory proteins, tetR family CEW88_02705 PF01546 Peptidase family M20/M25/M40 CEW88_02705 PF07687 Peptidase dimerisation domain CEW88_02710 PF01979 Amidohydrolase family CEW88_02715 PF00005 ABC transporter CEW88_02725 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_02730 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_02735 PF09084 NMT1/THI5 like CEW88_02750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CEW88_02750 PF00356 Bacterial regulatory proteins, lacI family CEW88_02760 PF01757 Acyltransferase family CEW88_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_02770 PF03466 LysR substrate binding domain CEW88_02775 PF02687 FtsX-like permease family CEW88_02775 PF12704 MacB-like periplasmic core domain CEW88_02775 PF00005 ABC transporter CEW88_02795 PF01790 Prolipoprotein diacylglyceryl transferase CEW88_02815 PF01037 Lrp/AsnC ligand binding domain CEW88_02820 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_02840 PF00011 Hsp20/alpha crystallin family CEW88_02850 PF03807 NADP oxidoreductase coenzyme F420-dependent CEW88_02850 PF14748 Pyrroline-5-carboxylate reductase dimerisation CEW88_02855 PF01588 Putative tRNA binding domain CEW88_02860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_02860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_02865 PF00265 Thymidine kinase CEW88_02880 PF18693 TRAM domain CEW88_02880 PF04055 Radical SAM superfamily CEW88_02880 PF00919 Uncharacterized protein family UPF0004 CEW88_02885 PF02080 TrkA-C domain CEW88_02885 PF03600 Citrate transporter CEW88_02895 PF01061 ABC-2 type transporter CEW88_02900 PF01066 CDP-alcohol phosphatidyltransferase CEW88_02910 PF00919 Uncharacterized protein family UPF0004 CEW88_02910 PF04055 Radical SAM superfamily CEW88_02915 PF01678 Diaminopimelate epimerase CEW88_02935 PF01943 Polysaccharide biosynthesis protein CEW88_02960 PF16363 GDP-mannose 4,6 dehydratase CEW88_02970 PF02397 Bacterial sugar transferase CEW88_02985 PF13439 Glycosyltransferase Family 4 CEW88_02985 PF00534 Glycosyl transferases group 1 CEW88_03000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_03000 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_03000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_03000 PF12806 Acetyl-CoA dehydrogenase C-terminal like CEW88_03010 PF13193 AMP-binding enzyme C-terminal domain CEW88_03010 PF00501 AMP-binding enzyme CEW88_03015 PF00378 Enoyl-CoA hydratase/isomerase CEW88_03020 PF00106 short chain dehydrogenase CEW88_03025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_03035 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_03040 PF12802 MarR family CEW88_03045 PF07976 Phenol hydroxylase, C-terminal dimerisation domain CEW88_03045 PF01494 FAD binding domain CEW88_03050 PF01047 MarR family CEW88_03055 PF04273 Putative phosphatase (DUF442) CEW88_03055 PF00753 Metallo-beta-lactamase superfamily CEW88_03060 PF01613 Flavin reductase like domain CEW88_03065 PF00881 Nitroreductase family CEW88_03070 PF03484 tRNA synthetase B5 domain CEW88_03070 PF03147 Ferredoxin-fold anticodon binding domain CEW88_03070 PF03483 B3/4 domain CEW88_03070 PF01588 Putative tRNA binding domain CEW88_03070 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CEW88_03075 PF02627 Carboxymuconolactone decarboxylase family CEW88_03080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_03080 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_03080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_03110 PF00149 Calcineurin-like phosphoesterase CEW88_03125 PF00535 Glycosyl transferase family 2 CEW88_03130 PF01066 CDP-alcohol phosphatidyltransferase CEW88_03135 PF00313 'Cold-shock' DNA-binding domain CEW88_03145 PF12848 ABC transporter CEW88_03145 PF00005 ABC transporter CEW88_03150 PF01467 Cytidylyltransferase-like CEW88_03165 PF01921 tRNA synthetases class I (K) CEW88_03170 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CEW88_03170 PF12708 Pectate lyase superfamily protein CEW88_03170 PF13229 Right handed beta helix region CEW88_03180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_03190 PF00923 Transaldolase/Fructose-6-phosphate aldolase CEW88_03195 PF18074 Primosomal protein N C-terminal domain CEW88_03195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CEW88_03195 PF17764 3′ DNA-binding domain (3′BD) CEW88_03195 PF00270 DEAD/DEAH box helicase CEW88_03200 PF01037 Lrp/AsnC ligand binding domain CEW88_03200 PF13404 AsnC-type helix-turn-helix domain CEW88_03210 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_03210 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_03215 PF13380 CoA binding domain CEW88_03220 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CEW88_03225 PF00977 Histidine biosynthesis protein CEW88_03230 PF02872 5'-nucleotidase, C-terminal domain CEW88_03230 PF00149 Calcineurin-like phosphoesterase CEW88_03245 PF01180 Dihydroorotate dehydrogenase CEW88_03250 PF03960 ArsC family CEW88_03255 PF10672 S-adenosylmethionine-dependent methyltransferase CEW88_03255 PF02926 THUMP domain CEW88_03255 PF01170 Putative RNA methylase family UPF0020 CEW88_03265 PF00977 Histidine biosynthesis protein CEW88_03270 PF00117 Glutamine amidotransferase class-I CEW88_03275 PF00475 Imidazoleglycerol-phosphate dehydratase CEW88_03295 PF13361 UvrD-like helicase C-terminal domain CEW88_03295 PF00580 UvrD/REP helicase N-terminal domain CEW88_03300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CEW88_03300 PF00364 Biotin-requiring enzyme CEW88_03300 PF02436 Conserved carboxylase domain CEW88_03300 PF00289 Biotin carboxylase, N-terminal domain CEW88_03300 PF00682 HMGL-like CEW88_03300 PF02785 Biotin carboxylase C-terminal domain CEW88_03310 PF01575 MaoC like domain CEW88_03335 PF02896 PEP-utilising enzyme, TIM barrel domain CEW88_03335 PF05524 PEP-utilising enzyme, N-terminal CEW88_03335 PF00391 PEP-utilising enzyme, mobile domain CEW88_03340 PF00696 Amino acid kinase family CEW88_03340 PF01842 ACT domain CEW88_03340 PF13840 ACT domain CEW88_03360 PF00534 Glycosyl transferases group 1 CEW88_03360 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CEW88_03365 PF00588 SpoU rRNA Methylase family CEW88_03365 PF08032 RNA 2'-O ribose methyltransferase substrate binding CEW88_03375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CEW88_03375 PF00925 GTP cyclohydrolase II CEW88_03380 PF00885 6,7-dimethyl-8-ribityllumazine synthase CEW88_03385 PF01029 NusB family CEW88_03430 PF00849 RNA pseudouridylate synthase CEW88_03435 PF00140 Sigma-70 factor, region 1.2 CEW88_03435 PF04545 Sigma-70, region 4 CEW88_03435 PF04542 Sigma-70 region 2 CEW88_03440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_03440 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_03450 PF00892 EamA-like transporter family CEW88_03455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CEW88_03460 PF01266 FAD dependent oxidoreductase CEW88_03465 PF00120 Glutamine synthetase, catalytic domain CEW88_03470 PF00117 Glutamine amidotransferase class-I CEW88_03470 PF00958 GMP synthase C terminal domain CEW88_03470 PF02540 NAD synthase CEW88_03475 PF00120 Glutamine synthetase, catalytic domain CEW88_03480 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_03485 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_03490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_03495 PF00005 ABC transporter CEW88_03510 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CEW88_03520 PF06418 CTP synthase N-terminus CEW88_03520 PF00117 Glutamine amidotransferase class-I CEW88_03545 PF06965 Na+/H+ antiporter 1 CEW88_03545 PF01343 Peptidase family S49 CEW88_03555 PF01699 Sodium/calcium exchanger protein CEW88_03565 PF12826 Helix-hairpin-helix motif CEW88_03565 PF01541 GIY-YIG catalytic domain CEW88_03565 PF02151 UvrB/uvrC motif CEW88_03565 PF08459 UvrC Helix-hairpin-helix N-terminal CEW88_03570 PF01118 Semialdehyde dehydrogenase, NAD binding domain CEW88_03575 PF01926 50S ribosome-binding GTPase CEW88_03575 PF06071 Protein of unknown function (DUF933) CEW88_03580 PF01554 MatE CEW88_03600 PF03976 Polyphosphate kinase 2 (PPK2) CEW88_03610 PF00290 Tryptophan synthase alpha chain CEW88_03620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_03620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CEW88_03625 PF17042 Nucleotide-binding C-terminal domain CEW88_03625 PF07005 Sugar-binding N-terminal domain CEW88_03630 PF00596 Class II Aldolase and Adducin N-terminal domain CEW88_03635 PF01261 Xylose isomerase-like TIM barrel CEW88_03640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_03640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_03650 PF00294 pfkB family carbohydrate kinase CEW88_03660 PF01565 FAD binding domain CEW88_03660 PF02913 FAD linked oxidases, C-terminal domain CEW88_03665 PF00701 Dihydrodipicolinate synthetase family CEW88_03680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CEW88_03680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_03685 PF00356 Bacterial regulatory proteins, lacI family CEW88_03700 PF00920 Dehydratase family CEW88_03710 PF16363 GDP-mannose 4,6 dehydratase CEW88_03715 PF00892 EamA-like transporter family CEW88_03720 PF08666 SAF domain CEW88_03720 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CEW88_03725 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_03735 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_03740 PF00392 Bacterial regulatory proteins, gntR family CEW88_03740 PF07729 FCD domain CEW88_03800 PF06628 Catalase-related immune-responsive CEW88_03800 PF18011 C-terminal domain found in long catalases CEW88_03800 PF00199 Catalase CEW88_03810 PF00535 Glycosyl transferase family 2 CEW88_03820 PF03466 LysR substrate binding domain CEW88_03820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_03830 PF03631 Virulence factor BrkB CEW88_03855 PF01270 Glycosyl hydrolases family 8 CEW88_03865 PF00535 Glycosyl transferase family 2 CEW88_03865 PF07238 PilZ domain CEW88_03865 PF03552 Cellulose synthase CEW88_03880 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_03880 PF00175 Oxidoreductase NAD-binding domain CEW88_03880 PF00970 Oxidoreductase FAD-binding domain CEW88_03890 PF13194 Domain of unknown function (DUF4010) CEW88_03895 PF00689 Cation transporting ATPase, C-terminus CEW88_03895 PF00690 Cation transporter/ATPase, N-terminus CEW88_03905 PF00072 Response regulator receiver domain CEW88_03905 PF00196 Bacterial regulatory proteins, luxR family CEW88_03910 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_03935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_03940 PF01799 [2Fe-2S] binding domain CEW88_03940 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_03950 PF01032 FecCD transport family CEW88_03955 PF00005 ABC transporter CEW88_03965 PF01037 Lrp/AsnC ligand binding domain CEW88_03975 PF13454 FAD-NAD(P)-binding CEW88_04000 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_04005 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_04010 PF00005 ABC transporter CEW88_04010 PF08402 TOBE domain CEW88_04025 PF00581 Rhodanese-like domain CEW88_04030 PF00586 AIR synthase related protein, N-terminal domain CEW88_04030 PF02769 AIR synthase related protein, C-terminal domain CEW88_04035 PF13409 Glutathione S-transferase, N-terminal domain CEW88_04040 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_04045 PF03466 LysR substrate binding domain CEW88_04045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_04050 PF03099 Biotin/lipoate A/B protein ligase family CEW88_04070 PF09334 tRNA synthetases class I (M) CEW88_04075 PF00230 Major intrinsic protein CEW88_04080 PF00248 Aldo/keto reductase family CEW88_04085 PF02390 Putative methyltransferase CEW88_04130 PF00437 Type II/IV secretion system protein CEW88_04135 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_04145 PF13629 Pilus formation protein N terminal region CEW88_04145 PF00263 Bacterial type II and III secretion system protein CEW88_04145 PF04972 BON domain CEW88_04160 PF01464 Transglycosylase SLT domain CEW88_04165 PF00270 DEAD/DEAH box helicase CEW88_04165 PF04408 Helicase associated domain (HA2) CEW88_04165 PF08482 ATP-dependent helicase C-terminal CEW88_04165 PF00271 Helicase conserved C-terminal domain CEW88_04195 PF00830 Ribosomal L28 family CEW88_04200 PF04314 Copper chaperone PCu(A)C CEW88_04205 PF02146 Sir2 family CEW88_04210 PF01451 Low molecular weight phosphotyrosine protein phosphatase CEW88_04220 PF00133 tRNA synthetases class I (I, L, M and V) CEW88_04220 PF08264 Anticodon-binding domain of tRNA CEW88_04225 PF05128 Domain of unknown function (DUF697) CEW88_04235 PF04317 YcjX-like family, DUF463 CEW88_04240 PF01416 tRNA pseudouridine synthase CEW88_04245 PF00202 Aminotransferase class-III CEW88_04250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CEW88_04250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CEW88_04255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_04255 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CEW88_04270 PF02913 FAD linked oxidases, C-terminal domain CEW88_04270 PF01565 FAD binding domain CEW88_04280 PF01266 FAD dependent oxidoreductase CEW88_04290 PF00465 Iron-containing alcohol dehydrogenase CEW88_04295 PF00171 Aldehyde dehydrogenase family CEW88_04300 PF03951 Glutamine synthetase, beta-Grasp domain CEW88_04300 PF00120 Glutamine synthetase, catalytic domain CEW88_04305 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_04310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_04325 PF09397 Ftsk gamma domain CEW88_04325 PF17854 FtsK alpha domain CEW88_04325 PF01580 FtsK/SpoIIIE family CEW88_04330 PF05853 beta-keto acid cleavage enzyme CEW88_04335 PF07729 FCD domain CEW88_04335 PF00392 Bacterial regulatory proteins, gntR family CEW88_04345 PF08241 Methyltransferase domain CEW88_04365 PF00679 Elongation factor G C-terminus CEW88_04365 PF00009 Elongation factor Tu GTP binding domain CEW88_04365 PF03144 Elongation factor Tu domain 2 CEW88_04365 PF06421 GTP-binding protein LepA C-terminus CEW88_04380 PF03466 LysR substrate binding domain CEW88_04380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_04385 PF12697 Alpha/beta hydrolase family CEW88_04410 PF04542 Sigma-70 region 2 CEW88_04410 PF08281 Sigma-70, region 4 CEW88_04425 PF00990 Diguanylate cyclase, GGDEF domain CEW88_04425 PF00072 Response regulator receiver domain CEW88_04445 PF00990 Diguanylate cyclase, GGDEF domain CEW88_04445 PF03707 Bacterial signalling protein N terminal repeat CEW88_04445 PF00563 EAL domain CEW88_04500 PF05649 Peptidase family M13 CEW88_04500 PF01431 Peptidase family M13 CEW88_04505 PF01926 50S ribosome-binding GTPase CEW88_04510 PF10396 GTP-binding protein TrmE N-terminus CEW88_04510 PF12631 MnmE helical domain CEW88_04510 PF01926 50S ribosome-binding GTPase CEW88_04520 PF00072 Response regulator receiver domain CEW88_04525 PF03061 Thioesterase superfamily CEW88_04530 PF05336 L-rhamnose mutarotase CEW88_04540 PF01557 Fumarylacetoacetate (FAA) hydrolase family CEW88_04555 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_04565 PF13277 YmdB-like protein CEW88_04575 PF02080 TrkA-C domain CEW88_04575 PF03600 Citrate transporter CEW88_04580 PF01709 Transcriptional regulator CEW88_04610 PF00561 alpha/beta hydrolase fold CEW88_04620 PF00471 Ribosomal protein L33 CEW88_04630 PF04715 Anthranilate synthase component I, N terminal region CEW88_04630 PF00425 chorismate binding enzyme CEW88_04630 PF00117 Glutamine amidotransferase class-I CEW88_04640 PF01027 Inhibitor of apoptosis-promoting Bax1 CEW88_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_04650 PF03466 LysR substrate binding domain CEW88_04655 PF00550 Phosphopantetheine attachment site CEW88_04655 PF14765 Polyketide synthase dehydratase CEW88_04655 PF16197 Ketoacyl-synthetase C-terminal extension CEW88_04655 PF00698 Acyl transferase domain CEW88_04655 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_04655 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_04655 PF00107 Zinc-binding dehydrogenase CEW88_04655 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_04655 PF08659 KR domain CEW88_04660 PF01381 Helix-turn-helix CEW88_04665 PF00459 Inositol monophosphatase family CEW88_04670 PF01979 Amidohydrolase family CEW88_04685 PF01979 Amidohydrolase family CEW88_04690 PF03448 MgtE intracellular N domain CEW88_04690 PF01769 Divalent cation transporter CEW88_04690 PF00571 CBS domain CEW88_04695 PF01812 5-formyltetrahydrofolate cyclo-ligase family CEW88_04700 PF02844 Phosphoribosylglycinamide synthetase, N domain CEW88_04700 PF02843 Phosphoribosylglycinamide synthetase, C domain CEW88_04700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CEW88_04705 PF13742 OB-fold nucleic acid binding domain CEW88_04705 PF02601 Exonuclease VII, large subunit CEW88_04715 PF01464 Transglycosylase SLT domain CEW88_04715 PF14718 Soluble lytic murein transglycosylase L domain CEW88_04720 PF00448 SRP54-type protein, GTPase domain CEW88_04720 PF02881 SRP54-type protein, helical bundle domain CEW88_04725 PF02308 MgtC family CEW88_04730 PF04279 Intracellular septation protein A CEW88_04735 PF00083 Sugar (and other) transporter CEW88_04735 PF07690 Major Facilitator Superfamily CEW88_04745 PF00709 Adenylosuccinate synthetase CEW88_04760 PF01026 TatD related DNase CEW88_04895 PF03237 Terminase-like family CEW88_04930 PF10124 Mu-like prophage major head subunit gpT CEW88_04995 PF02381 MraZ protein, putative antitoxin-like CEW88_05000 PF01795 MraW methylase family CEW88_05010 PF03717 Penicillin-binding Protein dimerisation domain CEW88_05010 PF00905 Penicillin binding protein transpeptidase domain CEW88_05015 PF08245 Mur ligase middle domain CEW88_05015 PF02875 Mur ligase family, glutamate ligase domain CEW88_05015 PF01225 Mur ligase family, catalytic domain CEW88_05020 PF01225 Mur ligase family, catalytic domain CEW88_05020 PF08245 Mur ligase middle domain CEW88_05020 PF02875 Mur ligase family, glutamate ligase domain CEW88_05025 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CEW88_05025 PF00953 Glycosyl transferase family 4 CEW88_05030 PF08245 Mur ligase middle domain CEW88_05030 PF02875 Mur ligase family, glutamate ligase domain CEW88_05045 PF01098 Cell cycle protein CEW88_05050 PF04101 Glycosyltransferase family 28 C-terminal domain CEW88_05050 PF03033 Glycosyltransferase family 28 N-terminal domain CEW88_05055 PF02875 Mur ligase family, glutamate ligase domain CEW88_05055 PF08245 Mur ligase middle domain CEW88_05055 PF01225 Mur ligase family, catalytic domain CEW88_05070 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CEW88_05070 PF01565 FAD binding domain CEW88_05075 PF07478 D-ala D-ala ligase C-terminus CEW88_05075 PF01820 D-ala D-ala ligase N-terminus CEW88_05080 PF03799 Cell division protein FtsQ CEW88_05085 PF02491 SHS2 domain inserted in FTSA CEW88_05090 PF12327 FtsZ family, C-terminal domain CEW88_05090 PF00091 Tubulin/FtsZ family, GTPase domain CEW88_05095 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CEW88_05100 PF13525 Outer membrane lipoprotein CEW88_05105 PF02463 RecF/RecN/SMC N terminal domain CEW88_05110 PF08264 Anticodon-binding domain of tRNA CEW88_05110 PF10458 Valyl tRNA synthetase tRNA binding arm CEW88_05110 PF00133 tRNA synthetases class I (I, L, M and V) CEW88_05120 PF10609 NUBPL iron-transfer P-loop NTPase CEW88_05125 PF09115 DNA polymerase III, delta subunit, C terminal CEW88_05130 PF02223 Thymidylate kinase CEW88_05135 PF07943 Penicillin-binding protein 5, C-terminal domain CEW88_05135 PF00768 D-alanyl-D-alanine carboxypeptidase CEW88_05150 PF00072 Response regulator receiver domain CEW88_05150 PF00196 Bacterial regulatory proteins, luxR family CEW88_05155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_05155 PF00529 HlyD membrane-fusion protein of T1SS CEW88_05160 PF00005 ABC transporter CEW88_05160 PF00664 ABC transporter transmembrane region CEW88_05185 PF00905 Penicillin binding protein transpeptidase domain CEW88_05185 PF00912 Transglycosylase CEW88_05185 PF17092 Penicillin-binding protein OB-like domain CEW88_05190 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_05190 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_05195 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_05200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_05205 PF00005 ABC transporter CEW88_05205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_05210 PF05209 Septum formation inhibitor MinC, N-terminal domain CEW88_05210 PF03775 Septum formation inhibitor MinC, C-terminal domain CEW88_05215 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_05220 PF03776 Septum formation topological specificity factor MinE CEW88_05225 PF00012 Hsp70 protein CEW88_05230 PF01546 Peptidase family M20/M25/M40 CEW88_05230 PF07687 Peptidase dimerisation domain CEW88_05235 PF01266 FAD dependent oxidoreductase CEW88_05240 PF07687 Peptidase dimerisation domain CEW88_05240 PF01546 Peptidase family M20/M25/M40 CEW88_05250 PF00512 His Kinase A (phospho-acceptor) domain CEW88_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_05250 PF08521 Two-component sensor kinase N-terminal CEW88_05255 PF00486 Transcriptional regulatory protein, C terminal CEW88_05255 PF00072 Response regulator receiver domain CEW88_05270 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_05280 PF03551 Transcriptional regulator PadR-like family CEW88_05290 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEW88_05290 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CEW88_05300 PF00873 AcrB/AcrD/AcrF family CEW88_05305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_05310 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_05320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_05325 PF01370 NAD dependent epimerase/dehydratase family CEW88_05330 PF00701 Dihydrodipicolinate synthetase family CEW88_05335 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CEW88_05335 PF13378 Enolase C-terminal domain-like CEW88_05340 PF04909 Amidohydrolase CEW88_05350 PF07470 Glycosyl Hydrolase Family 88 CEW88_05355 PF00295 Glycosyl hydrolases family 28 CEW88_05360 PF01547 Bacterial extracellular solute-binding protein CEW88_05370 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_05375 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_05390 PF07729 FCD domain CEW88_05390 PF00392 Bacterial regulatory proteins, gntR family CEW88_05395 PF04962 KduI/IolB family CEW88_05440 PF01933 Uncharacterised protein family UPF0052 CEW88_05460 PF04143 Sulphur transport CEW88_05465 PF00753 Metallo-beta-lactamase superfamily CEW88_05475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_05475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_05475 PF00378 Enoyl-CoA hydratase/isomerase CEW88_05485 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CEW88_05495 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_05510 PF00551 Formyl transferase CEW88_05515 PF00128 Alpha amylase, catalytic domain CEW88_05520 PF09335 SNARE associated Golgi protein CEW88_05540 PF02219 Methylenetetrahydrofolate reductase CEW88_05545 PF03466 LysR substrate binding domain CEW88_05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_05550 PF00313 'Cold-shock' DNA-binding domain CEW88_05555 PF03960 ArsC family CEW88_05560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CEW88_05560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CEW88_05560 PF03129 Anticodon binding domain CEW88_05560 PF02824 TGS domain CEW88_05585 PF00892 EamA-like transporter family CEW88_05605 PF00255 Glutathione peroxidase CEW88_05610 PF01258 Prokaryotic dksA/traR C4-type zinc finger CEW88_05625 PF01276 Orn/Lys/Arg decarboxylase, major domain CEW88_05625 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CEW88_05625 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CEW88_05630 PF04679 ATP dependent DNA ligase C terminal region CEW88_05630 PF04675 DNA ligase N terminus CEW88_05630 PF01068 ATP dependent DNA ligase domain CEW88_05660 PF01479 S4 domain CEW88_05665 PF11953 Domain of unknown function (DUF3470) CEW88_05665 PF00037 4Fe-4S binding domain CEW88_05670 PF02559 CarD-like/TRCF domain CEW88_05675 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_05680 PF02254 TrkA-N domain CEW88_05680 PF00999 Sodium/hydrogen exchanger family CEW88_05685 PF01053 Cys/Met metabolism PLP-dependent enzyme CEW88_05690 PF02649 Type I GTP cyclohydrolase folE2 CEW88_05700 PF02386 Cation transport protein CEW88_05705 PF01565 FAD binding domain CEW88_05705 PF02913 FAD linked oxidases, C-terminal domain CEW88_05710 PF00654 Voltage gated chloride channel CEW88_05715 PF02566 OsmC-like protein CEW88_05720 PF01047 MarR family CEW88_05730 PF01321 Creatinase/Prolidase N-terminal domain CEW88_05730 PF00557 Metallopeptidase family M24 CEW88_05735 PF06213 Cobalamin biosynthesis protein CobT CEW88_05735 PF11775 Cobalamin biosynthesis protein CobT VWA domain CEW88_05750 PF12556 Cobaltochelatase CobS subunit N terminal CEW88_05750 PF07728 AAA domain (dynein-related subfamily) CEW88_05750 PF08406 CbbQ/NirQ/NorQ C-terminal CEW88_05765 PF01641 SelR domain CEW88_05770 PF00226 DnaJ domain CEW88_05775 PF01722 BolA-like protein CEW88_05785 PF03594 Benzoate membrane transport protein CEW88_05790 PF02492 CobW/HypB/UreG, nucleotide-binding domain CEW88_05790 PF07683 Cobalamin synthesis protein cobW C-terminal domain CEW88_05810 PF04349 Periplasmic glucan biosynthesis protein, MdoG CEW88_05815 PF02934 GatB/GatE catalytic domain CEW88_05815 PF02637 GatB domain CEW88_05835 PF11940 Domain of unknown function (DUF3458) Ig-like fold CEW88_05835 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CEW88_05835 PF01433 Peptidase family M1 domain CEW88_05850 PF00873 AcrB/AcrD/AcrF family CEW88_05875 PF00202 Aminotransferase class-III CEW88_05880 PF00850 Histone deacetylase domain CEW88_05890 PF04403 Paraquat-inducible protein A CEW88_05895 PF02470 MlaD protein CEW88_05915 PF00929 Exonuclease CEW88_05930 PF00474 Sodium:solute symporter family CEW88_05940 PF05191 Adenylate kinase, active site lid CEW88_05945 PF16177 Acetyl-coenzyme A synthetase N-terminus CEW88_05945 PF13193 AMP-binding enzyme C-terminal domain CEW88_05945 PF00501 AMP-binding enzyme CEW88_05955 PF07043 Protein of unknown function (DUF1328) CEW88_05960 PF00072 Response regulator receiver domain CEW88_05970 PF08281 Sigma-70, region 4 CEW88_05970 PF04542 Sigma-70 region 2 CEW88_05975 PF07568 Histidine kinase CEW88_05975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_05975 PF12282 Signal transduction histidine kinase CEW88_05985 PF07722 Peptidase C26 CEW88_05995 PF00171 Aldehyde dehydrogenase family CEW88_06000 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CEW88_06000 PF01926 50S ribosome-binding GTPase CEW88_06015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CEW88_06015 PF02403 Seryl-tRNA synthetase N-terminal domain CEW88_06020 PF00089 Trypsin CEW88_06025 PF02699 Preprotein translocase subunit CEW88_06030 PF02355 Protein export membrane protein CEW88_06035 PF02355 Protein export membrane protein CEW88_06035 PF07549 SecD/SecF GG Motif CEW88_06040 PF04430 Protein of unknown function (DUF498/DUF598) CEW88_06045 PF00005 ABC transporter CEW88_06050 PF03379 CcmB protein CEW88_06055 PF01578 Cytochrome C assembly protein CEW88_06060 PF04995 Heme exporter protein D (CcmD) CEW88_06065 PF08534 Redoxin CEW88_06095 PF03951 Glutamine synthetase, beta-Grasp domain CEW88_06095 PF00120 Glutamine synthetase, catalytic domain CEW88_06100 PF00543 Nitrogen regulatory protein P-II CEW88_06105 PF03853 YjeF-related protein N-terminus CEW88_06105 PF01256 Carbohydrate kinase CEW88_06115 PF01757 Acyltransferase family CEW88_06120 PF00144 Beta-lactamase CEW88_06120 PF11954 Domain of unknown function (DUF3471) CEW88_06130 PF00550 Phosphopantetheine attachment site CEW88_06135 PF00205 Thiamine pyrophosphate enzyme, central domain CEW88_06135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CEW88_06135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CEW88_06140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_06150 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_06155 PF00171 Aldehyde dehydrogenase family CEW88_06165 PF00809 Pterin binding enzyme CEW88_06170 PF13419 Haloacid dehalogenase-like hydrolase CEW88_06175 PF02219 Methylenetetrahydrofolate reductase CEW88_06185 PF02541 Ppx/GppA phosphatase family CEW88_06190 PF01728 FtsJ-like methyltransferase CEW88_06205 PF13660 Domain of unknown function (DUF4147) CEW88_06205 PF05161 MOFRL family CEW88_06215 PF07690 Major Facilitator Superfamily CEW88_06230 PF13175 AAA ATPase domain CEW88_06260 PF00210 Ferritin-like domain CEW88_06280 PF08534 Redoxin CEW88_06285 PF04055 Radical SAM superfamily CEW88_06285 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CEW88_06310 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_06310 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_06315 PF02618 YceG-like family CEW88_06320 PF00398 Ribosomal RNA adenine dimethylase CEW88_06325 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CEW88_06330 PF00639 PPIC-type PPIASE domain CEW88_06330 PF09312 SurA N-terminal domain CEW88_06335 PF04453 LPS transport system D CEW88_06335 PF03968 OstA-like protein CEW88_06350 PF00883 Cytosol aminopeptidase family, catalytic domain CEW88_06360 PF00027 Cyclic nucleotide-binding domain CEW88_06360 PF00325 Bacterial regulatory proteins, crp family CEW88_06370 PF01914 MarC family integral membrane protein CEW88_06375 PF00005 ABC transporter CEW88_06375 PF12848 ABC transporter CEW88_06380 PF00334 Nucleoside diphosphate kinase CEW88_06390 PF01679 Proteolipid membrane potential modulator CEW88_06400 PF00155 Aminotransferase class I and II CEW88_06415 PF04860 Phage portal protein CEW88_06490 PF06426 Serine acetyltransferase, N-terminal CEW88_06490 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_06495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CEW88_06495 PF02817 e3 binding domain CEW88_06495 PF00364 Biotin-requiring enzyme CEW88_06500 PF00364 Biotin-requiring enzyme CEW88_06500 PF02780 Transketolase, C-terminal domain CEW88_06500 PF02779 Transketolase, pyrimidine binding domain CEW88_06505 PF00676 Dehydrogenase E1 component CEW88_06510 PF04977 Septum formation initiator CEW88_06515 PF00162 Phosphoglycerate kinase CEW88_06520 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CEW88_06525 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CEW88_06535 PF00571 CBS domain CEW88_06535 PF00478 IMP dehydrogenase / GMP reductase domain CEW88_06540 PF01189 16S rRNA methyltransferase RsmB/F CEW88_06540 PF01029 NusB family CEW88_06555 PF00154 recA bacterial DNA recombination protein CEW88_06560 PF01521 Iron-sulphur cluster biosynthesis CEW88_06565 PF13286 Phosphohydrolase-associated domain CEW88_06565 PF01966 HD domain CEW88_06570 PF00999 Sodium/hydrogen exchanger family CEW88_06570 PF02080 TrkA-C domain CEW88_06570 PF03471 Transporter associated domain CEW88_06575 PF00750 tRNA synthetases class I (R) CEW88_06575 PF05746 DALR anticodon binding domain CEW88_06575 PF03485 Arginyl tRNA synthetase N terminal domain CEW88_06585 PF00933 Glycosyl hydrolase family 3 N terminal domain CEW88_06590 PF02616 Segregation and condensation protein ScpA CEW88_06595 PF04079 Segregation and condensation complex subunit ScpB CEW88_06610 PF00692 dUTPase CEW88_06620 PF13411 MerR HTH family regulatory protein CEW88_06625 PF00216 Bacterial DNA-binding protein CEW88_06630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CEW88_06630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CEW88_06635 PF02504 Fatty acid synthesis protein CEW88_06640 PF01783 Ribosomal L32p protein family CEW88_06660 PF00850 Histone deacetylase domain CEW88_06675 PF00579 tRNA synthetases class I (W and Y) CEW88_06680 PF03702 Anhydro-N-acetylmuramic acid kinase CEW88_06705 PF00691 OmpA family CEW88_06710 PF04055 Radical SAM superfamily CEW88_06710 PF06463 Molybdenum Cofactor Synthesis C CEW88_06720 PF00472 RF-1 domain CEW88_06720 PF03462 PCRF domain CEW88_06740 PF01842 ACT domain CEW88_06740 PF10369 Small subunit of acetolactate synthase CEW88_06745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CEW88_06745 PF00205 Thiamine pyrophosphate enzyme, central domain CEW88_06745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CEW88_06755 PF00072 Response regulator receiver domain CEW88_06755 PF00196 Bacterial regulatory proteins, luxR family CEW88_06760 PF17200 Single Cache domain 2 CEW88_06760 PF07730 Histidine kinase CEW88_06765 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_06775 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_06780 PF02574 Homocysteine S-methyltransferase CEW88_06780 PF02607 B12 binding domain CEW88_06780 PF02965 Vitamin B12 dependent methionine synthase, activation domain CEW88_06780 PF00809 Pterin binding enzyme CEW88_06780 PF02310 B12 binding domain CEW88_06785 PF00175 Oxidoreductase NAD-binding domain CEW88_06785 PF00970 Oxidoreductase FAD-binding domain CEW88_06785 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_06790 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CEW88_06790 PF00355 Rieske [2Fe-2S] domain CEW88_06795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CEW88_06795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CEW88_06800 PF01037 Lrp/AsnC ligand binding domain CEW88_06805 PF01207 Dihydrouridine synthase (Dus) CEW88_06815 PF03652 Holliday junction resolvase CEW88_06825 PF01266 FAD dependent oxidoreductase CEW88_06845 PF17806 Sarcosine oxidase A3 domain CEW88_06845 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_06845 PF08669 Glycine cleavage T-protein C-terminal barrel domain CEW88_06845 PF01571 Aminomethyltransferase folate-binding domain CEW88_06860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CEW88_06860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CEW88_06865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_06870 PF00106 short chain dehydrogenase CEW88_06875 PF00296 Luciferase-like monooxygenase CEW88_06895 PF02028 BCCT, betaine/carnitine/choline family transporter CEW88_06905 PF03441 FAD binding domain of DNA photolyase CEW88_06905 PF00875 DNA photolyase CEW88_06915 PF00293 NUDIX domain CEW88_06920 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_06920 PF00571 CBS domain CEW88_06925 PF12794 Mechanosensitive ion channel inner membrane domain 1 CEW88_06925 PF12795 Mechanosensitive ion channel porin domain CEW88_06925 PF00924 Mechanosensitive ion channel CEW88_06930 PF01411 tRNA synthetases class II (A) CEW88_06930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CEW88_06930 PF02272 DHHA1 domain CEW88_06945 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CEW88_06955 PF01156 Inosine-uridine preferring nucleoside hydrolase CEW88_06960 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CEW88_06960 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CEW88_06965 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CEW88_06970 PF00342 Phosphoglucose isomerase CEW88_06995 PF05951 Bacterial protein of unknown function (DUF882) CEW88_07005 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_07005 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CEW88_07010 PF00550 Phosphopantetheine attachment site CEW88_07015 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_07015 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_07020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CEW88_07020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEW88_07025 PF05661 Protein of unknown function (DUF808) CEW88_07030 PF02779 Transketolase, pyrimidine binding domain CEW88_07030 PF02780 Transketolase, C-terminal domain CEW88_07030 PF00456 Transketolase, thiamine diphosphate binding domain CEW88_07045 PF00113 Enolase, C-terminal TIM barrel domain CEW88_07045 PF03952 Enolase, N-terminal domain CEW88_07060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CEW88_07060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CEW88_07060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CEW88_07060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CEW88_07065 PF02446 4-alpha-glucanotransferase CEW88_07070 PF00128 Alpha amylase, catalytic domain CEW88_07070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CEW88_07075 PF00534 Glycosyl transferases group 1 CEW88_07075 PF08323 Starch synthase catalytic domain CEW88_07080 PF00483 Nucleotidyl transferase CEW88_07085 PF00128 Alpha amylase, catalytic domain CEW88_07085 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CEW88_07085 PF02806 Alpha amylase, C-terminal all-beta domain CEW88_07090 PF00343 Carbohydrate phosphorylase CEW88_07095 PF02685 Glucokinase CEW88_07100 PF00232 Glycosyl hydrolase family 1 CEW88_07105 PF00356 Bacterial regulatory proteins, lacI family CEW88_07110 PF01547 Bacterial extracellular solute-binding protein CEW88_07115 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07120 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07125 PF00128 Alpha amylase, catalytic domain CEW88_07130 PF03459 TOBE domain CEW88_07130 PF17912 MalK OB fold domain CEW88_07130 PF00005 ABC transporter CEW88_07135 PF00005 ABC transporter CEW88_07135 PF17755 UvrA DNA-binding domain CEW88_07135 PF17760 UvrA interaction domain CEW88_07145 PF00378 Enoyl-CoA hydratase/isomerase CEW88_07155 PF02615 Malate/L-lactate dehydrogenase CEW88_07165 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_07165 PF01799 [2Fe-2S] binding domain CEW88_07170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_07170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_07175 PF03450 CO dehydrogenase flavoprotein C-terminal domain CEW88_07175 PF00941 FAD binding domain in molybdopterin dehydrogenase CEW88_07180 PF07685 CobB/CobQ-like glutamine amidotransferase domain CEW88_07180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_07190 PF00180 Isocitrate/isopropylmalate dehydrogenase CEW88_07195 PF07690 Major Facilitator Superfamily CEW88_07205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CEW88_07205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_07210 PF00378 Enoyl-CoA hydratase/isomerase CEW88_07215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_07215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_07215 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_07220 PF00534 Glycosyl transferases group 1 CEW88_07220 PF13439 Glycosyltransferase Family 4 CEW88_07225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_07235 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_07240 PF02769 AIR synthase related protein, C-terminal domain CEW88_07240 PF00586 AIR synthase related protein, N-terminal domain CEW88_07245 PF00551 Formyl transferase CEW88_07255 PF01612 3'-5' exonuclease CEW88_07255 PF00570 HRDC domain CEW88_07265 PF02657 Fe-S metabolism associated domain CEW88_07270 PF01765 Ribosome recycling factor CEW88_07275 PF01255 Putative undecaprenyl diphosphate synthase CEW88_07285 PF13288 DXP reductoisomerase C-terminal domain CEW88_07285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CEW88_07285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CEW88_07290 PF02163 Peptidase family M50 CEW88_07290 PF17820 PDZ domain CEW88_07295 PF01103 Surface antigen CEW88_07295 PF07244 Surface antigen variable number repeat CEW88_07305 PF07977 FabA-like domain CEW88_07310 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_07310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CEW88_07320 PF02684 Lipid-A-disaccharide synthetase CEW88_07330 PF05872 Bacterial protein of unknown function (DUF853) CEW88_07345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_07370 PF04227 Indigoidine synthase A like protein CEW88_07385 PF09335 SNARE associated Golgi protein CEW88_07390 PF01220 Dehydroquinase class II CEW88_07395 PF00889 Elongation factor TS CEW88_07400 PF00318 Ribosomal protein S2 CEW88_07420 PF13533 Biotin-lipoyl like CEW88_07425 PF00072 Response regulator receiver domain CEW88_07425 PF00486 Transcriptional regulatory protein, C terminal CEW88_07430 PF01895 PhoU domain CEW88_07435 PF00005 ABC transporter CEW88_07440 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07445 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07455 PF16736 Single Cache-like CEW88_07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_07455 PF00512 His Kinase A (phospho-acceptor) domain CEW88_07455 PF00989 PAS fold CEW88_07460 PF01053 Cys/Met metabolism PLP-dependent enzyme CEW88_07470 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_07475 PF00625 Guanylate kinase CEW88_07480 PF08340 Domain of unknown function (DUF1732) CEW88_07480 PF03755 YicC-like family, N-terminal region CEW88_07490 PF00483 Nucleotidyl transferase CEW88_07495 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CEW88_07495 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CEW88_07500 PF05116 Sucrose-6F-phosphate phosphohydrolase CEW88_07500 PF00982 Glycosyltransferase family 20 CEW88_07505 PF00982 Glycosyltransferase family 20 CEW88_07510 PF01474 Class-II DAHP synthetase family CEW88_07515 PF01965 DJ-1/PfpI family CEW88_07515 PF12833 Helix-turn-helix domain CEW88_07525 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_07525 PF00005 ABC transporter CEW88_07530 PF00005 ABC transporter CEW88_07540 PF02653 Branched-chain amino acid transport system / permease component CEW88_07560 PF00501 AMP-binding enzyme CEW88_07560 PF13193 AMP-binding enzyme C-terminal domain CEW88_07565 PF02867 Ribonucleotide reductase, barrel domain CEW88_07565 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CEW88_07580 PF00313 'Cold-shock' DNA-binding domain CEW88_07585 PF01243 Pyridoxamine 5'-phosphate oxidase CEW88_07585 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CEW88_07595 PF00156 Phosphoribosyl transferase domain CEW88_07600 PF05368 NmrA-like family CEW88_07605 PF01638 HxlR-like helix-turn-helix CEW88_07610 PF00155 Aminotransferase class I and II CEW88_07620 PF04715 Anthranilate synthase component I, N terminal region CEW88_07620 PF00425 chorismate binding enzyme CEW88_07630 PF00080 Copper/zinc superoxide dismutase (SODC) CEW88_07635 PF00571 CBS domain CEW88_07635 PF02163 Peptidase family M50 CEW88_07640 PF02310 B12 binding domain CEW88_07640 PF02607 B12 binding domain CEW88_07640 PF02965 Vitamin B12 dependent methionine synthase, activation domain CEW88_07640 PF00809 Pterin binding enzyme CEW88_07640 PF02574 Homocysteine S-methyltransferase CEW88_07645 PF04055 Radical SAM superfamily CEW88_07650 PF02607 B12 binding domain CEW88_07650 PF02310 B12 binding domain CEW88_07665 PF02885 Glycosyl transferase family, helical bundle domain CEW88_07665 PF00591 Glycosyl transferase family, a/b domain CEW88_07670 PF03167 Uracil DNA glycosylase superfamily CEW88_07675 PF00218 Indole-3-glycerol phosphate synthase CEW88_07680 PF01967 MoaC family CEW88_07685 PF03453 MoeA N-terminal region (domain I and II) CEW88_07685 PF00994 Probable molybdopterin binding domain CEW88_07685 PF03454 MoeA C-terminal region (domain IV) CEW88_07690 PF00717 Peptidase S24-like CEW88_07690 PF01726 LexA DNA binding domain CEW88_07695 PF03772 Competence protein CEW88_07695 PF13567 Domain of unknown function (DUF4131) CEW88_07695 PF00753 Metallo-beta-lactamase superfamily CEW88_07700 PF00749 tRNA synthetases class I (E and Q), catalytic domain CEW88_07705 PF00285 Citrate synthase, C-terminal domain CEW88_07710 PF00285 Citrate synthase, C-terminal domain CEW88_07715 PF02515 CoA-transferase family III CEW88_07720 PF00378 Enoyl-CoA hydratase/isomerase CEW88_07725 PF03918 Cytochrome C biogenesis protein CEW88_07730 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CEW88_07730 PF01578 Cytochrome C assembly protein CEW88_07740 PF01016 Ribosomal L27 protein CEW88_07745 PF00829 Ribosomal prokaryotic L21 protein CEW88_07770 PF09335 SNARE associated Golgi protein CEW88_07790 PF00072 Response regulator receiver domain CEW88_07790 PF00196 Bacterial regulatory proteins, luxR family CEW88_07795 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CEW88_07795 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEW88_07810 PF01467 Cytidylyltransferase-like CEW88_07815 PF00571 CBS domain CEW88_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_07820 PF03466 LysR substrate binding domain CEW88_07825 PF00171 Aldehyde dehydrogenase family CEW88_07850 PF02417 Chromate transporter CEW88_07860 PF00206 Lyase CEW88_07860 PF10415 Fumarase C C-terminus CEW88_07875 PF00206 Lyase CEW88_07875 PF10397 Adenylosuccinate lyase C-terminus CEW88_07905 PF00330 Aconitase family (aconitate hydratase) CEW88_07905 PF00694 Aconitase C-terminal domain CEW88_07915 PF00296 Luciferase-like monooxygenase CEW88_07920 PF00512 His Kinase A (phospho-acceptor) domain CEW88_07920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_07920 PF08521 Two-component sensor kinase N-terminal CEW88_07925 PF00072 Response regulator receiver domain CEW88_07925 PF00486 Transcriptional regulatory protein, C terminal CEW88_07930 PF03734 L,D-transpeptidase catalytic domain CEW88_07935 PF03734 L,D-transpeptidase catalytic domain CEW88_07940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_07940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_07945 PF01232 Mannitol dehydrogenase Rossmann domain CEW88_07945 PF08125 Mannitol dehydrogenase C-terminal domain CEW88_07955 PF00005 ABC transporter CEW88_07955 PF08402 TOBE domain CEW88_07960 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07965 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_07975 PF04198 Putative sugar-binding domain CEW88_07990 PF00902 Sec-independent protein translocase protein (TatC) CEW88_08000 PF02416 mttA/Hcf106 family CEW88_08005 PF13280 WYL domain CEW88_08005 PF08279 HTH domain CEW88_08015 PF04264 YceI-like domain CEW88_08025 PF01250 Ribosomal protein S6 CEW88_08030 PF01084 Ribosomal protein S18 CEW88_08035 PF03948 Ribosomal protein L9, C-terminal domain CEW88_08035 PF01281 Ribosomal protein L9, N-terminal domain CEW88_08045 PF05697 Bacterial trigger factor protein (TF) CEW88_08045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CEW88_08045 PF05698 Bacterial trigger factor protein (TF) C-terminus CEW88_08050 PF02233 NAD(P) transhydrogenase beta subunit CEW88_08055 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CEW88_08055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CEW88_08055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CEW88_08065 PF00266 Aminotransferase class-V CEW88_08070 PF07722 Peptidase C26 CEW88_08080 PF01274 Malate synthase CEW88_08085 PF00005 ABC transporter CEW88_08085 PF00664 ABC transporter transmembrane region CEW88_08110 PF00274 Fructose-bisphosphate aldolase class-I CEW88_08115 PF00067 Cytochrome P450 CEW88_08125 PF02683 Cytochrome C biogenesis protein transmembrane region CEW88_08130 PF00575 S1 RNA binding domain CEW88_08130 PF10150 Ribonuclease E/G family CEW88_08130 PF12111 Polyribonucleotide phosphorylase C terminal CEW88_08135 PF03328 HpcH/HpaI aldolase/citrate lyase family CEW88_08140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_08140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CEW88_08145 PF01804 Penicillin amidase CEW88_08155 PF16360 GTP-binding GTPase Middle Region CEW88_08155 PF13167 GTP-binding GTPase N-terminal CEW88_08155 PF01926 50S ribosome-binding GTPase CEW88_08160 PF17209 Hfq protein CEW88_08165 PF02386 Cation transport protein CEW88_08170 PF02254 TrkA-N domain CEW88_08170 PF02080 TrkA-C domain CEW88_08175 PF02954 Bacterial regulatory protein, Fis family CEW88_08175 PF00072 Response regulator receiver domain CEW88_08175 PF00158 Sigma-54 interaction domain CEW88_08180 PF00512 His Kinase A (phospho-acceptor) domain CEW88_08180 PF00989 PAS fold CEW88_08180 PF00672 HAMP domain CEW88_08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_08185 PF14532 Sigma-54 interaction domain CEW88_08185 PF00072 Response regulator receiver domain CEW88_08185 PF02954 Bacterial regulatory protein, Fis family CEW88_08190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_08190 PF00512 His Kinase A (phospho-acceptor) domain CEW88_08195 PF01207 Dihydrouridine synthase (Dus) CEW88_08200 PF02542 YgbB family CEW88_08200 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CEW88_08210 PF02464 Competence-damaged protein CEW88_08215 PF03364 Polyketide cyclase / dehydrase and lipid transport CEW88_08230 PF00034 Cytochrome c CEW88_08235 PF01134 Glucose inhibited division protein A CEW88_08245 PF00749 tRNA synthetases class I (E and Q), catalytic domain CEW88_08250 PF01502 Phosphoribosyl-AMP cyclohydrolase CEW88_08260 PF00270 DEAD/DEAH box helicase CEW88_08260 PF00271 Helicase conserved C-terminal domain CEW88_08260 PF17191 RecG wedge domain CEW88_08265 PF00533 BRCA1 C Terminus (BRCT) domain CEW88_08265 PF03120 NAD-dependent DNA ligase OB-fold domain CEW88_08265 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CEW88_08265 PF12826 Helix-hairpin-helix motif CEW88_08265 PF01653 NAD-dependent DNA ligase adenylation domain CEW88_08270 PF00486 Transcriptional regulatory protein, C terminal CEW88_08270 PF00072 Response regulator receiver domain CEW88_08295 PF03707 Bacterial signalling protein N terminal repeat CEW88_08295 PF00990 Diguanylate cyclase, GGDEF domain CEW88_08295 PF00563 EAL domain CEW88_08300 PF00158 Sigma-54 interaction domain CEW88_08300 PF00072 Response regulator receiver domain CEW88_08300 PF02954 Bacterial regulatory protein, Fis family CEW88_08305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_08305 PF02743 Cache domain CEW88_08305 PF00512 His Kinase A (phospho-acceptor) domain CEW88_08315 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_08315 PF13823 Alcohol dehydrogenase GroES-associated CEW88_08315 PF00107 Zinc-binding dehydrogenase CEW88_08320 PF04204 Homoserine O-succinyltransferase CEW88_08325 PF00561 alpha/beta hydrolase fold CEW88_08330 PF03976 Polyphosphate kinase 2 (PPK2) CEW88_08350 PF00380 Ribosomal protein S9/S16 CEW88_08355 PF00572 Ribosomal protein L13 CEW88_08360 PF00392 Bacterial regulatory proteins, gntR family CEW88_08360 PF00155 Aminotransferase class I and II CEW88_08370 PF01761 3-dehydroquinate synthase CEW88_08375 PF01202 Shikimate kinase CEW88_08385 PF02899 Phage integrase, N-terminal SAM-like domain CEW88_08385 PF00589 Phage integrase family CEW88_08390 PF00696 Amino acid kinase family CEW88_08410 PF03150 Di-haem cytochrome c peroxidase CEW88_08415 PF01464 Transglycosylase SLT domain CEW88_08420 PF00436 Single-strand binding protein family CEW88_08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_08425 PF00512 His Kinase A (phospho-acceptor) domain CEW88_08425 PF00072 Response regulator receiver domain CEW88_08425 PF08448 PAS fold CEW88_08425 PF13188 PAS domain CEW88_08435 PF03471 Transporter associated domain CEW88_08435 PF00571 CBS domain CEW88_08435 PF01595 Cyclin M transmembrane N-terminal domain CEW88_08455 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CEW88_08460 PF01259 SAICAR synthetase CEW88_08470 PF00512 His Kinase A (phospho-acceptor) domain CEW88_08470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_08470 PF00672 HAMP domain CEW88_08555 PF01695 IstB-like ATP binding protein CEW88_08560 PF12833 Helix-turn-helix domain CEW88_08565 PF00795 Carbon-nitrogen hydrolase CEW88_08595 PF00989 PAS fold CEW88_08610 PF13193 AMP-binding enzyme C-terminal domain CEW88_08610 PF00501 AMP-binding enzyme CEW88_08615 PF07728 AAA domain (dynein-related subfamily) CEW88_08625 PF00741 Gas vesicle protein CEW88_08655 PF00741 Gas vesicle protein CEW88_08680 PF00741 Gas vesicle protein CEW88_08685 PF13426 PAS domain CEW88_08685 PF08447 PAS fold CEW88_08685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CEW88_08700 PF13519 von Willebrand factor type A domain CEW88_08700 PF07584 Aerotolerance regulator N-terminal CEW88_08715 PF01882 Protein of unknown function DUF58 CEW88_08720 PF07726 ATPase family associated with various cellular activities (AAA) CEW88_08720 PF17863 AAA lid domain CEW88_08730 PF00884 Sulfatase CEW88_08735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_08735 PF03466 LysR substrate binding domain CEW88_08740 PF00199 Catalase CEW88_08740 PF06628 Catalase-related immune-responsive CEW88_08770 PF00117 Glutamine amidotransferase class-I CEW88_08770 PF00958 GMP synthase C terminal domain CEW88_08770 PF02540 NAD synthase CEW88_08790 PF00672 HAMP domain CEW88_08790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CEW88_08790 PF02203 Tar ligand binding domain homologue CEW88_08800 PF00893 Small Multidrug Resistance protein CEW88_08825 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CEW88_08825 PF02272 DHHA1 domain CEW88_08825 PF01411 tRNA synthetases class II (A) CEW88_08855 PF00462 Glutaredoxin CEW88_08865 PF00557 Metallopeptidase family M24 CEW88_08870 PF03100 CcmE CEW88_08875 PF01177 Asp/Glu/Hydantoin racemase CEW88_08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_08885 PF03466 LysR substrate binding domain CEW88_08890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CEW88_08890 PF00586 AIR synthase related protein, N-terminal domain CEW88_08890 PF02769 AIR synthase related protein, C-terminal domain CEW88_08905 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CEW88_08910 PF02628 Cytochrome oxidase assembly protein CEW88_08915 PF00588 SpoU rRNA Methylase family CEW88_08930 PF02581 Thiamine monophosphate synthase CEW88_08930 PF02110 Hydroxyethylthiazole kinase family CEW88_08950 PF10090 Histidine phosphotransferase C-terminal domain CEW88_08955 PF00171 Aldehyde dehydrogenase family CEW88_08960 PF01472 PUA domain CEW88_08960 PF00696 Amino acid kinase family CEW88_08965 PF01926 50S ribosome-binding GTPase CEW88_08965 PF01018 GTP1/OBG CEW88_08985 PF01883 Iron-sulfur cluster assembly protein CEW88_08995 PF01521 Iron-sulphur cluster biosynthesis CEW88_09000 PF00121 Triosephosphate isomerase CEW88_09005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_09010 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CEW88_09015 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_09020 PF02954 Bacterial regulatory protein, Fis family CEW88_09020 PF00072 Response regulator receiver domain CEW88_09020 PF00158 Sigma-54 interaction domain CEW88_09025 PF00512 His Kinase A (phospho-acceptor) domain CEW88_09025 PF02743 Cache domain CEW88_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_09030 PF00067 Cytochrome P450 CEW88_09035 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CEW88_09035 PF17770 Ribonuclease J C-terminal domain CEW88_09035 PF12706 Beta-lactamase superfamily domain CEW88_09040 PF03309 Type III pantothenate kinase CEW88_09045 PF02237 Biotin protein ligase C terminal domain CEW88_09045 PF03099 Biotin/lipoate A/B protein ligase family CEW88_09050 PF00361 Proton-conducting membrane transporter CEW88_09055 PF00361 Proton-conducting membrane transporter CEW88_09060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CEW88_09060 PF00361 Proton-conducting membrane transporter CEW88_09065 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CEW88_09070 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CEW88_09075 PF02627 Carboxymuconolactone decarboxylase family CEW88_09080 PF12838 4Fe-4S dicluster domain CEW88_09085 PF00146 NADH dehydrogenase CEW88_09095 PF00384 Molybdopterin oxidoreductase CEW88_09095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CEW88_09095 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CEW88_09115 PF10531 SLBB domain CEW88_09115 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CEW88_09115 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CEW88_09140 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CEW88_09145 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CEW88_09150 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CEW88_09155 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CEW88_09160 PF00378 Enoyl-CoA hydratase/isomerase CEW88_09165 PF00682 HMGL-like CEW88_09170 PF14497 Glutathione S-transferase, C-terminal domain CEW88_09170 PF02798 Glutathione S-transferase, N-terminal domain CEW88_09175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CEW88_09175 PF00364 Biotin-requiring enzyme CEW88_09175 PF00289 Biotin carboxylase, N-terminal domain CEW88_09175 PF02785 Biotin carboxylase C-terminal domain CEW88_09180 PF01039 Carboxyl transferase domain CEW88_09185 PF13193 AMP-binding enzyme C-terminal domain CEW88_09185 PF00501 AMP-binding enzyme CEW88_09195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_09195 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_09195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_09210 PF01494 FAD binding domain CEW88_09215 PF01258 Prokaryotic dksA/traR C4-type zinc finger CEW88_09220 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_09220 PF17862 AAA+ lid domain CEW88_09220 PF01434 Peptidase family M41 CEW88_09225 PF00271 Helicase conserved C-terminal domain CEW88_09225 PF00270 DEAD/DEAH box helicase CEW88_09230 PF02566 OsmC-like protein CEW88_09240 PF01037 Lrp/AsnC ligand binding domain CEW88_09250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CEW88_09250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CEW88_09255 PF01507 Phosphoadenosine phosphosulfate reductase family CEW88_09265 PF00175 Oxidoreductase NAD-binding domain CEW88_09265 PF00970 Oxidoreductase FAD-binding domain CEW88_09280 PF00707 Translation initiation factor IF-3, C-terminal domain CEW88_09280 PF05198 Translation initiation factor IF-3, N-terminal domain CEW88_09290 PF02625 XdhC and CoxI family CEW88_09290 PF13478 XdhC Rossmann domain CEW88_09295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CEW88_09300 PF13419 Haloacid dehalogenase-like hydrolase CEW88_09305 PF12804 MobA-like NTP transferase domain CEW88_09305 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_09310 PF01380 SIS domain CEW88_09315 PF00266 Aminotransferase class-V CEW88_09330 PF01458 Uncharacterized protein family (UPF0051) CEW88_09335 PF00005 ABC transporter CEW88_09345 PF01906 Putative heavy-metal-binding CEW88_09355 PF01458 Uncharacterized protein family (UPF0051) CEW88_09360 PF00266 Aminotransferase class-V CEW88_09365 PF02082 Transcriptional regulator CEW88_09370 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CEW88_09385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CEW88_09385 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_09410 PF02547 Queuosine biosynthesis protein CEW88_09420 PF00578 AhpC/TSA family CEW88_09425 PF08525 Opacity-associated protein A N-terminal motif CEW88_09425 PF01476 LysM domain CEW88_09425 PF01551 Peptidase family M23 CEW88_09460 PF07690 Major Facilitator Superfamily CEW88_09470 PF00682 HMGL-like CEW88_09470 PF08502 LeuA allosteric (dimerisation) domain CEW88_09475 PF09190 DALR domain CEW88_09475 PF01406 tRNA synthetases class I (C) catalytic domain CEW88_09485 PF17827 PrmC N-terminal domain CEW88_09485 PF05175 Methyltransferase small domain CEW88_09490 PF00472 RF-1 domain CEW88_09490 PF03462 PCRF domain CEW88_09505 PF00491 Arginase family CEW88_09510 PF01546 Peptidase family M20/M25/M40 CEW88_09510 PF07687 Peptidase dimerisation domain CEW88_09515 PF01546 Peptidase family M20/M25/M40 CEW88_09515 PF07687 Peptidase dimerisation domain CEW88_09520 PF03819 MazG nucleotide pyrophosphohydrolase domain CEW88_09525 PF13416 Bacterial extracellular solute-binding protein CEW88_09530 PF07969 Amidohydrolase family CEW88_09545 PF00005 ABC transporter CEW88_09550 PF00005 ABC transporter CEW88_09555 PF06007 Phosphonate metabolism protein PhnJ CEW88_09565 PF05861 Bacterial phosphonate metabolism protein (PhnI) CEW88_09570 PF05845 Bacterial phosphonate metabolism protein (PhnH) CEW88_09575 PF06754 Phosphonate metabolism protein PhnG CEW88_09580 PF07702 UTRA domain CEW88_09580 PF00392 Bacterial regulatory proteins, gntR family CEW88_09595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CEW88_09595 PF00672 HAMP domain CEW88_09600 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_09605 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_09610 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_09620 PF00005 ABC transporter CEW88_09630 PF01244 Membrane dipeptidase (Peptidase family M19) CEW88_09635 PF00698 Acyl transferase domain CEW88_09640 PF13458 Periplasmic binding protein CEW88_09650 PF00005 ABC transporter CEW88_09650 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_09655 PF00005 ABC transporter CEW88_09660 PF12802 MarR family CEW88_09665 PF00873 AcrB/AcrD/AcrF family CEW88_09670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_09670 PF00529 HlyD membrane-fusion protein of T1SS CEW88_09680 PF13632 Glycosyl transferase family group 2 CEW88_09685 PF04349 Periplasmic glucan biosynthesis protein, MdoG CEW88_09700 PF01425 Amidase CEW88_09705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_09705 PF00005 ABC transporter CEW88_09710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_09710 PF00005 ABC transporter CEW88_09715 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_09715 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_09720 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_09725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_09730 PF01270 Glycosyl hydrolases family 8 CEW88_09740 PF00535 Glycosyl transferase family 2 CEW88_09740 PF03170 Bacterial cellulose synthase subunit CEW88_09740 PF07238 PilZ domain CEW88_09740 PF03552 Cellulose synthase CEW88_09750 PF02803 Thiolase, C-terminal domain CEW88_09750 PF00108 Thiolase, N-terminal domain CEW88_09755 PF01144 Coenzyme A transferase CEW88_09760 PF01144 Coenzyme A transferase CEW88_09765 PF09339 IclR helix-turn-helix domain CEW88_09765 PF01614 Bacterial transcriptional regulator CEW88_09770 PF13180 PDZ domain CEW88_09780 PF01145 SPFH domain / Band 7 family CEW88_09785 PF01145 SPFH domain / Band 7 family CEW88_09785 PF12221 Bacterial membrane protein N terminal CEW88_09790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_09790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CEW88_09795 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CEW88_09800 PF03313 Serine dehydratase alpha chain CEW88_09800 PF03315 Serine dehydratase beta chain CEW88_09830 PF02653 Branched-chain amino acid transport system / permease component CEW88_09840 PF07969 Amidohydrolase family CEW88_09855 PF02272 DHHA1 domain CEW88_09855 PF01368 DHH family CEW88_09855 PF17768 RecJ OB domain CEW88_09860 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CEW88_09865 PF03447 Homoserine dehydrogenase, NAD binding domain CEW88_09865 PF00742 Homoserine dehydrogenase CEW88_09865 PF01842 ACT domain CEW88_09895 PF00005 ABC transporter CEW88_09900 PF12704 MacB-like periplasmic core domain CEW88_09900 PF02687 FtsX-like permease family CEW88_09905 PF00155 Aminotransferase class I and II CEW88_09915 PF00266 Aminotransferase class-V CEW88_09925 PF00664 ABC transporter transmembrane region CEW88_09925 PF00005 ABC transporter CEW88_09930 PF01571 Aminomethyltransferase folate-binding domain CEW88_09940 PF08207 Elongation factor P (EF-P) KOW-like domain CEW88_09940 PF09285 Elongation factor P, C-terminal CEW88_09940 PF01132 Elongation factor P (EF-P) OB domain CEW88_09955 PF02321 Outer membrane efflux protein CEW88_09980 PF00384 Molybdopterin oxidoreductase CEW88_09980 PF01568 Molydopterin dinucleotide binding domain CEW88_09990 PF00672 HAMP domain CEW88_09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_09990 PF00512 His Kinase A (phospho-acceptor) domain CEW88_09990 PF13426 PAS domain CEW88_10000 PF00072 Response regulator receiver domain CEW88_10000 PF00486 Transcriptional regulatory protein, C terminal CEW88_10005 PF01381 Helix-turn-helix CEW88_10005 PF09856 Predicted transcriptional regulator (DUF2083) CEW88_10005 PF06114 IrrE N-terminal-like domain CEW88_10015 PF02653 Branched-chain amino acid transport system / permease component CEW88_10025 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_10025 PF00005 ABC transporter CEW88_10030 PF00005 ABC transporter CEW88_10035 PF13193 AMP-binding enzyme C-terminal domain CEW88_10035 PF16177 Acetyl-coenzyme A synthetase N-terminus CEW88_10035 PF00501 AMP-binding enzyme CEW88_10045 PF00364 Biotin-requiring enzyme CEW88_10050 PF02785 Biotin carboxylase C-terminal domain CEW88_10050 PF00289 Biotin carboxylase, N-terminal domain CEW88_10050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CEW88_10055 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CEW88_10085 PF06689 ClpX C4-type zinc finger CEW88_10085 PF07724 AAA domain (Cdc48 subfamily) CEW88_10085 PF10431 C-terminal, D2-small domain, of ClpB protein CEW88_10090 PF00574 Clp protease CEW88_10095 PF01545 Cation efflux family CEW88_10100 PF00677 Lumazine binding domain CEW88_10105 PF05159 Capsule polysaccharide biosynthesis protein CEW88_10115 PF05159 Capsule polysaccharide biosynthesis protein CEW88_10120 PF00950 ABC 3 transport family CEW88_10125 PF00005 ABC transporter CEW88_10130 PF01475 Ferric uptake regulator family CEW88_10135 PF01297 Zinc-uptake complex component A periplasmic CEW88_10145 PF01032 FecCD transport family CEW88_10150 PF01032 FecCD transport family CEW88_10155 PF00005 ABC transporter CEW88_10160 PF04954 Siderophore-interacting protein CEW88_10160 PF08021 Siderophore-interacting FAD-binding domain CEW88_10165 PF03746 LamB/YcsF family CEW88_10170 PF02626 Carboxyltransferase domain, subdomain A and B CEW88_10175 PF02682 Carboxyltransferase domain, subdomain C and D CEW88_10180 PF03884 DNA gyrase inhibitor YacG CEW88_10185 PF10150 Ribonuclease E/G family CEW88_10190 PF02545 Maf-like protein CEW88_10195 PF01176 Translation initiation factor 1A / IF-1 CEW88_10200 PF00795 Carbon-nitrogen hydrolase CEW88_10220 PF06793 Uncharacterised protein family (UPF0262) CEW88_10240 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CEW88_10250 PF01928 CYTH domain CEW88_10255 PF13614 AAA domain CEW88_10275 PF08275 DNA primase catalytic core, N-terminal domain CEW88_10275 PF01807 CHC2 zinc finger CEW88_10275 PF08278 DNA primase DnaG DnaB-binding CEW88_10275 PF10410 DnaB-helicase binding domain of primase CEW88_10280 PF04542 Sigma-70 region 2 CEW88_10280 PF04539 Sigma-70 region 3 CEW88_10280 PF04545 Sigma-70, region 4 CEW88_10280 PF00140 Sigma-70 factor, region 1.2 CEW88_10280 PF03979 Sigma-70 factor, region 1.1 CEW88_10280 PF04546 Sigma-70, non-essential region CEW88_10290 PF09335 SNARE associated Golgi protein CEW88_10295 PF16363 GDP-mannose 4,6 dehydratase CEW88_10300 PF17243 POTRA domain TamA domain 1 CEW88_10300 PF01103 Surface antigen CEW88_10315 PF02492 CobW/HypB/UreG, nucleotide-binding domain CEW88_10320 PF01730 UreF CEW88_10325 PF02814 UreE urease accessory protein, N-terminal domain CEW88_10325 PF05194 UreE urease accessory protein, C-terminal domain CEW88_10335 PF01979 Amidohydrolase family CEW88_10335 PF00449 Urease alpha-subunit, N-terminal domain CEW88_10360 PF00699 Urease beta subunit CEW88_10365 PF00547 Urease, gamma subunit CEW88_10370 PF01774 UreD urease accessory protein CEW88_10375 PF01980 tRNA-methyltransferase O CEW88_10380 PF01081 KDPG and KHG aldolase CEW88_10385 PF05035 2-keto-3-deoxy-galactonokinase CEW88_10395 PF01791 DeoC/LacD family aldolase CEW88_10405 PF14403 Circularly permuted ATP-grasp type 2 CEW88_10405 PF04168 A predicted alpha-helical domain with a conserved ER motif. CEW88_10415 PF00106 short chain dehydrogenase CEW88_10425 PF01894 Uncharacterised protein family UPF0047 CEW88_10430 PF03477 ATP cone domain CEW88_10435 PF01872 RibD C-terminal domain CEW88_10435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CEW88_10440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CEW88_10440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CEW88_10465 PF01817 Chorismate mutase type II CEW88_10465 PF00800 Prephenate dehydratase CEW88_10465 PF01842 ACT domain CEW88_10470 PF00034 Cytochrome c CEW88_10475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_10480 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_10485 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_10485 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_10490 PF00005 ABC transporter CEW88_10490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_10495 PF04055 Radical SAM superfamily CEW88_10500 PF00027 Cyclic nucleotide-binding domain CEW88_10500 PF13545 Crp-like helix-turn-helix domain CEW88_10505 PF07237 Protein of unknown function (DUF1428) CEW88_10525 PF00115 Cytochrome C and Quinol oxidase polypeptide I CEW88_10540 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CEW88_10540 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CEW88_10545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_10545 PF03466 LysR substrate binding domain CEW88_10550 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CEW88_10550 PF12801 4Fe-4S binding domain CEW88_10550 PF13746 4Fe-4S dicluster domain CEW88_10560 PF00403 Heavy-metal-associated domain CEW88_10580 PF01037 Lrp/AsnC ligand binding domain CEW88_10585 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CEW88_10585 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CEW88_10590 PF16916 Dimerisation domain of Zinc Transporter CEW88_10590 PF01545 Cation efflux family CEW88_10595 PF01741 Large-conductance mechanosensitive channel, MscL CEW88_10615 PF04085 rod shape-determining protein MreC CEW88_10625 PF03717 Penicillin-binding Protein dimerisation domain CEW88_10625 PF00905 Penicillin binding protein transpeptidase domain CEW88_10630 PF01098 Cell cycle protein CEW88_10635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_10640 PF00834 Ribulose-phosphate 3 epimerase family CEW88_10645 PF00916 Sulfate permease family CEW88_10645 PF01740 STAS domain CEW88_10650 PF01048 Phosphorylase superfamily CEW88_10655 PF01810 LysE type translocator CEW88_10660 PF00156 Phosphoribosyl transferase domain CEW88_10670 PF00561 alpha/beta hydrolase fold CEW88_10670 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CEW88_10680 PF01144 Coenzyme A transferase CEW88_10685 PF01144 Coenzyme A transferase CEW88_10690 PF13368 Topoisomerase C-terminal repeat CEW88_10690 PF01396 Topoisomerase DNA binding C4 zinc finger CEW88_10690 PF01751 Toprim domain CEW88_10690 PF01131 DNA topoisomerase CEW88_10695 PF02481 DNA recombination-mediator protein A CEW88_10695 PF17782 DprA winged helix domain CEW88_10700 PF01523 Putative modulator of DNA gyrase CEW88_10705 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CEW88_10705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CEW88_10710 PF01040 UbiA prenyltransferase family CEW88_10720 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CEW88_10725 PF00510 Cytochrome c oxidase subunit III CEW88_10730 PF02104 SURF1 family CEW88_10735 PF14821 Threonine synthase N terminus CEW88_10735 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_10740 PF00675 Insulinase (Peptidase family M16) CEW88_10740 PF05193 Peptidase M16 inactive domain CEW88_10755 PF13419 Haloacid dehalogenase-like hydrolase CEW88_10760 PF13649 Methyltransferase domain CEW88_10765 PF13416 Bacterial extracellular solute-binding protein CEW88_10770 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_10775 PF00005 ABC transporter CEW88_10780 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_10780 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_10790 PF09297 NADH pyrophosphatase zinc ribbon domain CEW88_10790 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CEW88_10790 PF00293 NUDIX domain CEW88_10795 PF00149 Calcineurin-like phosphoesterase CEW88_10795 PF02872 5'-nucleotidase, C-terminal domain CEW88_10800 PF13419 Haloacid dehalogenase-like hydrolase CEW88_10805 PF09084 NMT1/THI5 like CEW88_10810 PF00005 ABC transporter CEW88_10815 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_10835 PF00072 Response regulator receiver domain CEW88_10835 PF00196 Bacterial regulatory proteins, luxR family CEW88_10845 PF01627 Hpt domain CEW88_10845 PF00672 HAMP domain CEW88_10845 PF00512 His Kinase A (phospho-acceptor) domain CEW88_10845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CEW88_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_10845 PF00072 Response regulator receiver domain CEW88_10850 PF00535 Glycosyl transferase family 2 CEW88_10855 PF00535 Glycosyl transferase family 2 CEW88_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_10865 PF03466 LysR substrate binding domain CEW88_10880 PF05736 OprF membrane domain CEW88_10880 PF00691 OmpA family CEW88_10885 PF01040 UbiA prenyltransferase family CEW88_10890 PF04452 RNA methyltransferase CEW88_10905 PF04107 Glutamate-cysteine ligase family 2(GCS2) CEW88_10915 PF01740 STAS domain CEW88_10920 PF00108 Thiolase, N-terminal domain CEW88_10920 PF02803 Thiolase, C-terminal domain CEW88_10925 PF00849 RNA pseudouridylate synthase CEW88_10940 PF00444 Ribosomal protein L36 CEW88_10945 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CEW88_10955 PF00216 Bacterial DNA-binding protein CEW88_10965 PF00575 S1 RNA binding domain CEW88_10970 PF02954 Bacterial regulatory protein, Fis family CEW88_10975 PF00171 Aldehyde dehydrogenase family CEW88_10995 PF04402 Protein of unknown function (DUF541) CEW88_11005 PF05746 DALR anticodon binding domain CEW88_11005 PF02092 Glycyl-tRNA synthetase beta subunit CEW88_11010 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CEW88_11010 PF02896 PEP-utilising enzyme, TIM barrel domain CEW88_11010 PF00391 PEP-utilising enzyme, mobile domain CEW88_11015 PF01471 Putative peptidoglycan binding domain CEW88_11015 PF07486 Cell Wall Hydrolase CEW88_11020 PF02152 Dihydroneopterin aldolase CEW88_11025 PF00809 Pterin binding enzyme CEW88_11030 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CEW88_11030 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CEW88_11030 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CEW88_11030 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CEW88_11035 PF01554 MatE CEW88_11050 PF09278 MerR, DNA binding CEW88_11050 PF00376 MerR family regulatory protein CEW88_11055 PF09278 MerR, DNA binding CEW88_11055 PF00376 MerR family regulatory protein CEW88_11065 PF02798 Glutathione S-transferase, N-terminal domain CEW88_11065 PF00043 Glutathione S-transferase, C-terminal domain CEW88_11070 PF02803 Thiolase, C-terminal domain CEW88_11070 PF00108 Thiolase, N-terminal domain CEW88_11080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_11080 PF00378 Enoyl-CoA hydratase/isomerase CEW88_11080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_11105 PF00816 H-NS histone family CEW88_11110 PF01048 Phosphorylase superfamily CEW88_11125 PF13237 4Fe-4S dicluster domain CEW88_11125 PF13085 2Fe-2S iron-sulfur cluster binding domain CEW88_11135 PF02910 Fumarate reductase flavoprotein C-term CEW88_11135 PF00890 FAD binding domain CEW88_11140 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CEW88_11145 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CEW88_11150 PF01575 MaoC like domain CEW88_11165 PF03328 HpcH/HpaI aldolase/citrate lyase family CEW88_11175 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CEW88_11180 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11185 PF00005 ABC transporter CEW88_11190 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11195 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CEW88_11195 PF00056 lactate/malate dehydrogenase, NAD binding domain CEW88_11200 PF08442 ATP-grasp domain CEW88_11200 PF00549 CoA-ligase CEW88_11205 PF02629 CoA binding domain CEW88_11205 PF00549 CoA-ligase CEW88_11210 PF16870 2-oxoglutarate dehydrogenase C-terminal CEW88_11210 PF00676 Dehydrogenase E1 component CEW88_11210 PF16078 2-oxoglutarate dehydrogenase N-terminus CEW88_11210 PF02779 Transketolase, pyrimidine binding domain CEW88_11215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CEW88_11215 PF00364 Biotin-requiring enzyme CEW88_11215 PF02817 e3 binding domain CEW88_11230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CEW88_11230 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_11255 PF00005 ABC transporter CEW88_11265 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11270 PF00005 ABC transporter CEW88_11285 PF00202 Aminotransferase class-III CEW88_11300 PF01048 Phosphorylase superfamily CEW88_11300 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CEW88_11320 PF14489 QueF-like protein CEW88_11325 PF04055 Radical SAM superfamily CEW88_11330 PF01242 6-pyruvoyl tetrahydropterin synthase CEW88_11335 PF06508 Queuosine biosynthesis protein QueC CEW88_11340 PF02779 Transketolase, pyrimidine binding domain CEW88_11340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CEW88_11340 PF02780 Transketolase, C-terminal domain CEW88_11345 PF00348 Polyprenyl synthetase CEW88_11350 PF02609 Exonuclease VII small subunit CEW88_11355 PF00850 Histone deacetylase domain CEW88_11360 PF00072 Response regulator receiver domain CEW88_11360 PF00486 Transcriptional regulatory protein, C terminal CEW88_11365 PF12802 MarR family CEW88_11370 PF01063 Amino-transferase class IV CEW88_11380 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11385 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11395 PF00005 ABC transporter CEW88_11395 PF08402 TOBE domain CEW88_11400 PF01546 Peptidase family M20/M25/M40 CEW88_11400 PF07687 Peptidase dimerisation domain CEW88_11410 PF00925 GTP cyclohydrolase II CEW88_11415 PF00486 Transcriptional regulatory protein, C terminal CEW88_11415 PF00072 Response regulator receiver domain CEW88_11425 PF00575 S1 RNA binding domain CEW88_11425 PF01138 3' exoribonuclease family, domain 1 CEW88_11425 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CEW88_11425 PF00013 KH domain CEW88_11425 PF03725 3' exoribonuclease family, domain 2 CEW88_11430 PF00312 Ribosomal protein S15 CEW88_11440 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_11445 PF03966 Trm112p-like protein CEW88_11455 PF00085 Thioredoxin CEW88_11465 PF13091 PLD-like domain CEW88_11465 PF13396 Phospholipase_D-nuclease N-terminal CEW88_11480 PF00438 S-adenosylmethionine synthetase, N-terminal domain CEW88_11480 PF02773 S-adenosylmethionine synthetase, C-terminal domain CEW88_11480 PF02772 S-adenosylmethionine synthetase, central domain CEW88_11485 PF00795 Carbon-nitrogen hydrolase CEW88_11495 PF02130 Uncharacterized protein family UPF0054 CEW88_11500 PF02562 PhoH-like protein CEW88_11510 PF13488 Glycine zipper CEW88_11510 PF00691 OmpA family CEW88_11515 PF04055 Radical SAM superfamily CEW88_11515 PF01938 TRAM domain CEW88_11515 PF00919 Uncharacterized protein family UPF0004 CEW88_11535 PF07977 FabA-like domain CEW88_11540 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_11540 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_11550 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CEW88_11550 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CEW88_11600 PF01555 DNA methylase CEW88_11675 PF01037 Lrp/AsnC ligand binding domain CEW88_11680 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CEW88_11680 PF01619 Proline dehydrogenase CEW88_11680 PF14850 DNA-binding domain of Proline dehydrogenase CEW88_11680 PF00171 Aldehyde dehydrogenase family CEW88_11685 PF00672 HAMP domain CEW88_11685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CEW88_11690 PF01264 Chorismate synthase CEW88_11700 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11705 PF00005 ABC transporter CEW88_11710 PF02167 Cytochrome C1 family CEW88_11715 PF00032 Cytochrome b(C-terminal)/b6/petD CEW88_11715 PF00033 Cytochrome b/b6/petB CEW88_11720 PF00355 Rieske [2Fe-2S] domain CEW88_11720 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CEW88_11730 PF08274 PhnA Zinc-Ribbon CEW88_11730 PF03831 PhnA domain CEW88_11735 PF01066 CDP-alcohol phosphatidyltransferase CEW88_11740 PF02666 Phosphatidylserine decarboxylase CEW88_11745 PF00043 Glutathione S-transferase, C-terminal domain CEW88_11745 PF13417 Glutathione S-transferase, N-terminal domain CEW88_11750 PF00118 TCP-1/cpn60 chaperonin family CEW88_11755 PF00166 Chaperonin 10 Kd subunit CEW88_11760 PF00892 EamA-like transporter family CEW88_11775 PF01432 Peptidase family M3 CEW88_11780 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_11790 PF00899 ThiF family CEW88_11795 PF00692 dUTPase CEW88_11800 PF04127 DNA / pantothenate metabolism flavoprotein CEW88_11800 PF02441 Flavoprotein CEW88_11810 PF00140 Sigma-70 factor, region 1.2 CEW88_11810 PF04542 Sigma-70 region 2 CEW88_11810 PF04545 Sigma-70, region 4 CEW88_11815 PF01078 Magnesium chelatase, subunit ChlI CEW88_11815 PF13335 Magnesium chelatase, subunit ChlI C-terminal CEW88_11820 PF07859 alpha/beta hydrolase fold CEW88_11825 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CEW88_11825 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CEW88_11830 PF02021 Uncharacterised protein family UPF0102 CEW88_11835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_11845 PF08335 GlnD PII-uridylyltransferase CEW88_11845 PF01966 HD domain CEW88_11850 PF00313 'Cold-shock' DNA-binding domain CEW88_11855 PF00271 Helicase conserved C-terminal domain CEW88_11855 PF00270 DEAD/DEAH box helicase CEW88_11860 PF02386 Cation transport protein CEW88_11865 PF03023 Lipid II flippase MurJ CEW88_11870 PF13091 PLD-like domain CEW88_11880 PF00579 tRNA synthetases class I (W and Y) CEW88_11895 PF17864 RuvB AAA lid domain CEW88_11895 PF05491 RuvB C-terminal winged helix domain CEW88_11895 PF05496 Holliday junction DNA helicase RuvB P-loop domain CEW88_11900 PF07499 RuvA, C-terminal domain CEW88_11900 PF01330 RuvA N terminal domain CEW88_11905 PF02075 Crossover junction endodeoxyribonuclease RuvC CEW88_11925 PF01218 Coproporphyrinogen III oxidase CEW88_11935 PF08468 Methyltransferase small domain N-terminal CEW88_11935 PF05175 Methyltransferase small domain CEW88_11940 PF02617 ATP-dependent Clp protease adaptor protein ClpS CEW88_11950 PF00768 D-alanyl-D-alanine carboxypeptidase CEW88_11950 PF07943 Penicillin-binding protein 5, C-terminal domain CEW88_11955 PF01165 Ribosomal protein S21 CEW88_11965 PF00107 Zinc-binding dehydrogenase CEW88_11965 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_11975 PF00107 Zinc-binding dehydrogenase CEW88_11975 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_11980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CEW88_11985 PF13419 Haloacid dehalogenase-like hydrolase CEW88_11990 PF00561 alpha/beta hydrolase fold CEW88_11995 PF01509 TruB family pseudouridylate synthase (N terminal domain) CEW88_11995 PF16198 tRNA pseudouridylate synthase B C-terminal domain CEW88_12000 PF00561 alpha/beta hydrolase fold CEW88_12015 PF01022 Bacterial regulatory protein, arsR family CEW88_12020 PF00501 AMP-binding enzyme CEW88_12020 PF13193 AMP-binding enzyme C-terminal domain CEW88_12025 PF00005 ABC transporter CEW88_12025 PF00664 ABC transporter transmembrane region CEW88_12045 PF12973 ChrR Cupin-like domain CEW88_12050 PF04542 Sigma-70 region 2 CEW88_12050 PF04545 Sigma-70, region 4 CEW88_12075 PF02586 SOS response associated peptidase (SRAP) CEW88_12080 PF00849 RNA pseudouridylate synthase CEW88_12085 PF14437 MafB19-like deaminase CEW88_12090 PF00849 RNA pseudouridylate synthase CEW88_12090 PF01479 S4 domain CEW88_12110 PF05816 Toxic anion resistance protein (TelA) CEW88_12135 PF00294 pfkB family carbohydrate kinase CEW88_12140 PF02580 D-Tyr-tRNA(Tyr) deacylase CEW88_12155 PF08173 Membrane bound YbgT-like protein CEW88_12160 PF02322 Cytochrome bd terminal oxidase subunit II CEW88_12165 PF01654 Cytochrome bd terminal oxidase subunit I CEW88_12170 PF00005 ABC transporter CEW88_12170 PF00664 ABC transporter transmembrane region CEW88_12175 PF00005 ABC transporter CEW88_12175 PF00664 ABC transporter transmembrane region CEW88_12195 PF00512 His Kinase A (phospho-acceptor) domain CEW88_12195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_12200 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_12200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CEW88_12210 PF00468 Ribosomal protein L34 CEW88_12215 PF00825 Ribonuclease P CEW88_12220 PF01809 Putative membrane protein insertion efficiency factor CEW88_12225 PF01171 PP-loop family CEW88_12230 PF00990 Diguanylate cyclase, GGDEF domain CEW88_12230 PF00563 EAL domain CEW88_12230 PF03707 Bacterial signalling protein N terminal repeat CEW88_12235 PF14849 YidC periplasmic domain CEW88_12235 PF02096 60Kd inner membrane protein CEW88_12245 PF01926 50S ribosome-binding GTPase CEW88_12250 PF00696 Amino acid kinase family CEW88_12260 PF00005 ABC transporter CEW88_12265 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_12270 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_12275 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_12285 PF13419 Haloacid dehalogenase-like hydrolase CEW88_12290 PF01479 S4 domain CEW88_12290 PF00849 RNA pseudouridylate synthase CEW88_12295 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CEW88_12300 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_12300 PF16193 AAA C-terminal domain CEW88_12300 PF12002 MgsA AAA+ ATPase C terminal CEW88_12305 PF13180 PDZ domain CEW88_12325 PF04055 Radical SAM superfamily CEW88_12335 PF00403 Heavy-metal-associated domain CEW88_12340 PF00376 MerR family regulatory protein CEW88_12340 PF09278 MerR, DNA binding CEW88_12345 PF00072 Response regulator receiver domain CEW88_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_12345 PF01627 Hpt domain CEW88_12345 PF00672 HAMP domain CEW88_12345 PF17149 Periplasmic sensor domain found in signal transduction proteins CEW88_12345 PF00512 His Kinase A (phospho-acceptor) domain CEW88_12355 PF00072 Response regulator receiver domain CEW88_12355 PF00196 Bacterial regulatory proteins, luxR family CEW88_12360 PF01544 CorA-like Mg2+ transporter protein CEW88_12375 PF03144 Elongation factor Tu domain 2 CEW88_12375 PF00009 Elongation factor Tu GTP binding domain CEW88_12375 PF03143 Elongation factor Tu C-terminal domain CEW88_12380 PF01923 Cobalamin adenosyltransferase CEW88_12390 PF00106 short chain dehydrogenase CEW88_12400 PF03989 DNA gyrase C-terminal domain, beta-propeller CEW88_12400 PF00521 DNA gyrase/topoisomerase IV, subunit A CEW88_12405 PF01012 Electron transfer flavoprotein domain CEW88_12410 PF01012 Electron transfer flavoprotein domain CEW88_12410 PF00766 Electron transfer flavoprotein FAD-binding domain CEW88_12425 PF00005 ABC transporter CEW88_12430 PF03167 Uracil DNA glycosylase superfamily CEW88_12440 PF03576 Peptidase family S58 CEW88_12450 PF00171 Aldehyde dehydrogenase family CEW88_12455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_12455 PF00005 ABC transporter CEW88_12465 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_12475 PF07969 Amidohydrolase family CEW88_12480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CEW88_12480 PF02222 ATP-grasp domain CEW88_12485 PF00731 AIR carboxylase CEW88_12490 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CEW88_12490 PF00056 lactate/malate dehydrogenase, NAD binding domain CEW88_12505 PF01293 Phosphoenolpyruvate carboxykinase CEW88_12510 PF00072 Response regulator receiver domain CEW88_12510 PF00486 Transcriptional regulatory protein, C terminal CEW88_12515 PF13755 Sensor N-terminal transmembrane domain CEW88_12515 PF13756 Stimulus-sensing domain CEW88_12515 PF00672 HAMP domain CEW88_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_12515 PF00512 His Kinase A (phospho-acceptor) domain CEW88_12520 PF07475 HPr Serine kinase C-terminal domain CEW88_12520 PF02603 HPr Serine kinase N terminus CEW88_12525 PF03668 P-loop ATPase protein family CEW88_12535 PF00381 PTS HPr component phosphorylation site CEW88_12545 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_12545 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_12565 PF00355 Rieske [2Fe-2S] domain CEW88_12565 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CEW88_12580 PF00224 Pyruvate kinase, barrel domain CEW88_12580 PF02887 Pyruvate kinase, alpha/beta domain CEW88_12585 PF01632 Ribosomal protein L35 CEW88_12590 PF00453 Ribosomal protein L20 CEW88_12595 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CEW88_12595 PF01409 tRNA synthetases class II core domain (F) CEW88_12615 PF00133 tRNA synthetases class I (I, L, M and V) CEW88_12615 PF09334 tRNA synthetases class I (M) CEW88_12615 PF08264 Anticodon-binding domain of tRNA CEW88_12615 PF13603 Leucyl-tRNA synthetase, Domain 2 CEW88_12635 PF13181 Tetratricopeptide repeat CEW88_12640 PF01168 Alanine racemase, N-terminal domain CEW88_12645 PF00392 Bacterial regulatory proteins, gntR family CEW88_12645 PF00155 Aminotransferase class I and II CEW88_12650 PF01687 Riboflavin kinase CEW88_12650 PF06574 FAD synthetase CEW88_12655 PF03692 Putative zinc- or iron-chelating domain CEW88_12660 PF01212 Beta-eliminating lyase CEW88_12680 PF01580 FtsK/SpoIIIE family CEW88_12680 PF09397 Ftsk gamma domain CEW88_12680 PF17854 FtsK alpha domain CEW88_12680 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CEW88_12685 PF00155 Aminotransferase class I and II CEW88_12690 PF01546 Peptidase family M20/M25/M40 CEW88_12690 PF07687 Peptidase dimerisation domain CEW88_12695 PF00575 S1 RNA binding domain CEW88_12695 PF17876 Cold shock domain CEW88_12695 PF00773 RNB domain CEW88_12695 PF08461 Ribonuclease R winged-helix domain CEW88_12695 PF08206 Ribonuclease B OB domain CEW88_12705 PF08279 HTH domain CEW88_12705 PF13280 WYL domain CEW88_12710 PF13406 Transglycosylase SLT domain CEW88_12720 PF00293 NUDIX domain CEW88_12725 PF13180 PDZ domain CEW88_12725 PF03572 Peptidase family S41 CEW88_12735 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CEW88_12735 PF01676 Metalloenzyme superfamily CEW88_12740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_12750 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_12780 PF02594 Uncharacterised ACR, YggU family COG1872 CEW88_12785 PF00881 Nitroreductase family CEW88_12825 PF02938 GAD domain CEW88_12825 PF01336 OB-fold nucleic acid binding domain CEW88_12825 PF00152 tRNA synthetases class II (D, K and N) CEW88_12835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CEW88_12835 PF02142 MGS-like domain CEW88_12835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CEW88_12840 PF00005 ABC transporter CEW88_12845 PF00005 ABC transporter CEW88_12850 PF11862 Domain of unknown function (DUF3382) CEW88_12850 PF02653 Branched-chain amino acid transport system / permease component CEW88_12855 PF02653 Branched-chain amino acid transport system / permease component CEW88_12860 PF13458 Periplasmic binding protein CEW88_12875 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_12880 PF00005 ABC transporter CEW88_12880 PF03459 TOBE domain CEW88_12910 PF02517 CPBP intramembrane metalloprotease CEW88_12915 PF01039 Carboxyl transferase domain CEW88_12915 PF17848 Acetyl-coA carboxylase zinc finger domain CEW88_12920 PF08245 Mur ligase middle domain CEW88_12920 PF02875 Mur ligase family, glutamate ligase domain CEW88_12925 PF03969 AFG1-like ATPase CEW88_12930 PF07690 Major Facilitator Superfamily CEW88_12935 PF08241 Methyltransferase domain CEW88_12935 PF12697 Alpha/beta hydrolase family CEW88_12945 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CEW88_12950 PF00756 Putative esterase CEW88_12955 PF03547 Membrane transport protein CEW88_12965 PF00005 ABC transporter CEW88_12970 PF01230 HIT domain CEW88_13000 PF07726 ATPase family associated with various cellular activities (AAA) CEW88_13000 PF17863 AAA lid domain CEW88_13030 PF02913 FAD linked oxidases, C-terminal domain CEW88_13030 PF01565 FAD binding domain CEW88_13040 PF01546 Peptidase family M20/M25/M40 CEW88_13085 PF00580 UvrD/REP helicase N-terminal domain CEW88_13085 PF13361 UvrD-like helicase C-terminal domain CEW88_13085 PF12705 PD-(D/E)XK nuclease superfamily CEW88_13100 PF02371 Transposase IS116/IS110/IS902 family CEW88_13100 PF01548 Transposase CEW88_13130 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_13130 PF05362 Lon protease (S16) C-terminal proteolytic domain CEW88_13130 PF02190 ATP-dependent protease La (LON) substrate-binding domain CEW88_13135 PF03477 ATP cone domain CEW88_13135 PF00317 Ribonucleotide reductase, all-alpha domain CEW88_13135 PF02867 Ribonucleotide reductase, barrel domain CEW88_13150 PF02608 ABC transporter substrate-binding protein PnrA-like CEW88_13175 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_13175 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_13180 PF01799 [2Fe-2S] binding domain CEW88_13180 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_13190 PF14579 Helix-hairpin-helix motif CEW88_13190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CEW88_13190 PF02811 PHP domain CEW88_13190 PF07733 Bacterial DNA polymerase III alpha NTPase domain CEW88_13200 PF04102 SlyX CEW88_13210 PF03129 Anticodon binding domain CEW88_13210 PF13393 Histidyl-tRNA synthetase CEW88_13215 PF13393 Histidyl-tRNA synthetase CEW88_13220 PF01634 ATP phosphoribosyltransferase CEW88_13225 PF02798 Glutathione S-transferase, N-terminal domain CEW88_13230 PF00270 DEAD/DEAH box helicase CEW88_13230 PF00271 Helicase conserved C-terminal domain CEW88_13230 PF08494 DEAD/H associated CEW88_13240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CEW88_13240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CEW88_13250 PF01268 Formate--tetrahydrofolate ligase CEW88_13260 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_13260 PF01434 Peptidase family M41 CEW88_13260 PF06480 FtsH Extracellular CEW88_13260 PF17862 AAA+ lid domain CEW88_13265 PF01171 PP-loop family CEW88_13275 PF00691 OmpA family CEW88_13280 PF04052 TolB amino-terminal domain CEW88_13280 PF07676 WD40-like Beta Propeller Repeat CEW88_13290 PF02472 Biopolymer transport protein ExbD/TolR CEW88_13295 PF01618 MotA/TolQ/ExbB proton channel family CEW88_13300 PF03061 Thioesterase superfamily CEW88_13320 PF01063 Amino-transferase class IV CEW88_13325 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CEW88_13325 PF13378 Enolase C-terminal domain-like CEW88_13335 PF03328 HpcH/HpaI aldolase/citrate lyase family CEW88_13340 PF18030 RimK PreATP-grasp domain CEW88_13340 PF08443 RimK-like ATP-grasp domain CEW88_13345 PF00920 Dehydratase family CEW88_13350 PF05199 GMC oxidoreductase CEW88_13350 PF00732 GMC oxidoreductase CEW88_13355 PF01037 Lrp/AsnC ligand binding domain CEW88_13365 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CEW88_13400 PF00005 ABC transporter CEW88_13405 PF00005 ABC transporter CEW88_13405 PF09383 NIL domain CEW88_13410 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_13410 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_13415 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_13420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_13425 PF08753 NikR C terminal nickel binding domain CEW88_13425 PF01402 Ribbon-helix-helix protein, copG family CEW88_13430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_13435 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_13440 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_13440 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_13450 PF01032 FecCD transport family CEW88_13455 PF00005 ABC transporter CEW88_13475 PF00873 AcrB/AcrD/AcrF family CEW88_13520 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CEW88_13525 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_13535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_13540 PF03069 Acetamidase/Formamidase family CEW88_13545 PF00873 AcrB/AcrD/AcrF family CEW88_13550 PF00529 HlyD membrane-fusion protein of T1SS CEW88_13550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_13560 PF07702 UTRA domain CEW88_13560 PF00392 Bacterial regulatory proteins, gntR family CEW88_13565 PF00005 ABC transporter CEW88_13570 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_13580 PF01464 Transglycosylase SLT domain CEW88_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_13585 PF02913 FAD linked oxidases, C-terminal domain CEW88_13585 PF01565 FAD binding domain CEW88_13590 PF17392 Urocanase C-terminal domain CEW88_13590 PF01175 Urocanase Rossmann-like domain CEW88_13590 PF17391 Urocanase N-terminal domain CEW88_13600 PF00221 Aromatic amino acid lyase CEW88_13605 PF01979 Amidohydrolase family CEW88_13610 PF00296 Luciferase-like monooxygenase CEW88_13615 PF01594 AI-2E family transporter CEW88_13625 PF03631 Virulence factor BrkB CEW88_13630 PF00781 Diacylglycerol kinase catalytic domain CEW88_13650 PF01625 Peptide methionine sulfoxide reductase CEW88_13655 PF01641 SelR domain CEW88_13665 PF08331 Domain of unknown function (DUF1730) CEW88_13670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CEW88_13670 PF03129 Anticodon binding domain CEW88_13675 PF01594 AI-2E family transporter CEW88_13685 PF13089 Polyphosphate kinase N-terminal domain CEW88_13685 PF17941 Polyphosphate kinase C-terminal domain 1 CEW88_13685 PF13090 Polyphosphate kinase C-terminal domain 2 CEW88_13685 PF02503 Polyphosphate kinase middle domain CEW88_13690 PF02541 Ppx/GppA phosphatase family CEW88_13705 PF05099 Tellurite resistance protein TerB CEW88_13705 PF00226 DnaJ domain CEW88_13730 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CEW88_13730 PF02785 Biotin carboxylase C-terminal domain CEW88_13730 PF00289 Biotin carboxylase, N-terminal domain CEW88_13755 PF01039 Carboxyl transferase domain CEW88_13760 PF07690 Major Facilitator Superfamily CEW88_13765 PF01381 Helix-turn-helix CEW88_13765 PF06114 IrrE N-terminal-like domain CEW88_13765 PF09856 Predicted transcriptional regulator (DUF2083) CEW88_13775 PF02686 Glu-tRNAGln amidotransferase C subunit CEW88_13780 PF01425 Amidase CEW88_13790 PF01510 N-acetylmuramoyl-L-alanine amidase CEW88_13795 PF00115 Cytochrome C and Quinol oxidase polypeptide I CEW88_13815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CEW88_13815 PF00117 Glutamine amidotransferase class-I CEW88_13825 PF00392 Bacterial regulatory proteins, gntR family CEW88_13825 PF07729 FCD domain CEW88_13840 PF01494 FAD binding domain CEW88_13845 PF01464 Transglycosylase SLT domain CEW88_13845 PF14718 Soluble lytic murein transglycosylase L domain CEW88_13850 PF00701 Dihydrodipicolinate synthetase family CEW88_13855 PF05193 Peptidase M16 inactive domain CEW88_13860 PF05193 Peptidase M16 inactive domain CEW88_13860 PF00675 Insulinase (Peptidase family M16) CEW88_13870 PF01252 Signal peptidase (SPase) II CEW88_13880 PF01011 PQQ enzyme repeat CEW88_13885 PF13360 PQQ-like domain CEW88_13890 PF02142 MGS-like domain CEW88_13890 PF01808 AICARFT/IMPCHase bienzyme CEW88_13900 PF01189 16S rRNA methyltransferase RsmB/F CEW88_13900 PF01029 NusB family CEW88_13910 PF05173 Dihydrodipicolinate reductase, C-terminus CEW88_13910 PF01113 Dihydrodipicolinate reductase, N-terminus CEW88_13915 PF02033 Ribosome-binding factor A CEW88_13920 PF09992 Phosphodiester glycosidase CEW88_13925 PF01523 Putative modulator of DNA gyrase CEW88_13930 PF00459 Inositol monophosphatase family CEW88_13940 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CEW88_13945 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CEW88_13950 PF00171 Aldehyde dehydrogenase family CEW88_13955 PF00578 AhpC/TSA family CEW88_13955 PF10417 C-terminal domain of 1-Cys peroxiredoxin CEW88_13960 PF05552 Conserved TM helix CEW88_13960 PF00924 Mechanosensitive ion channel CEW88_13965 PF05977 Transmembrane secretion effector CEW88_13970 PF00464 Serine hydroxymethyltransferase CEW88_13980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_13985 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_13985 PF00970 Oxidoreductase FAD-binding domain CEW88_13985 PF00175 Oxidoreductase NAD-binding domain CEW88_13990 PF02508 Rnf-Nqr subunit, membrane protein CEW88_13995 PF02508 Rnf-Nqr subunit, membrane protein CEW88_14000 PF04205 FMN-binding domain CEW88_14005 PF03116 NQR2, RnfD, RnfE family CEW88_14010 PF11973 NQRA C-terminal domain CEW88_14010 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CEW88_14015 PF02424 ApbE family CEW88_14035 PF13593 SBF-like CPA transporter family (DUF4137) CEW88_14045 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_14060 PF03466 LysR substrate binding domain CEW88_14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_14070 PF02073 Thermophilic metalloprotease (M29) CEW88_14080 PF01384 Phosphate transporter family CEW88_14085 PF00271 Helicase conserved C-terminal domain CEW88_14085 PF00270 DEAD/DEAH box helicase CEW88_14090 PF07690 Major Facilitator Superfamily CEW88_14095 PF13533 Biotin-lipoyl like CEW88_14100 PF00440 Bacterial regulatory proteins, tetR family CEW88_14100 PF16859 Tetracyclin repressor-like, C-terminal domain CEW88_14105 PF02423 Ornithine cyclodeaminase/mu-crystallin family CEW88_14110 PF00491 Arginase family CEW88_14120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_14120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_14130 PF05336 L-rhamnose mutarotase CEW88_14135 PF02653 Branched-chain amino acid transport system / permease component CEW88_14140 PF02653 Branched-chain amino acid transport system / permease component CEW88_14145 PF00005 ABC transporter CEW88_14150 PF13407 Periplasmic binding protein domain CEW88_14155 PF08220 DeoR-like helix-turn-helix domain CEW88_14155 PF00455 DeoR C terminal sensor domain CEW88_14160 PF00596 Class II Aldolase and Adducin N-terminal domain CEW88_14165 PF01261 Xylose isomerase-like TIM barrel CEW88_14170 PF07506 RepB plasmid partitioning protein CEW88_14170 PF02195 ParB-like nuclease domain CEW88_14175 PF13614 AAA domain CEW88_14185 PF13407 Periplasmic binding protein domain CEW88_14190 PF00005 ABC transporter CEW88_14195 PF02653 Branched-chain amino acid transport system / permease component CEW88_14200 PF02653 Branched-chain amino acid transport system / permease component CEW88_14205 PF07729 FCD domain CEW88_14205 PF00392 Bacterial regulatory proteins, gntR family CEW88_14210 PF03466 LysR substrate binding domain CEW88_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_14215 PF13407 Periplasmic binding protein domain CEW88_14220 PF00005 ABC transporter CEW88_14225 PF02653 Branched-chain amino acid transport system / permease component CEW88_14230 PF00920 Dehydratase family CEW88_14235 PF08450 SMP-30/Gluconolactonase/LRE-like region CEW88_14240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_14245 PF01263 Aldose 1-epimerase CEW88_14255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_14280 PF01618 MotA/TolQ/ExbB proton channel family CEW88_14300 PF13193 AMP-binding enzyme C-terminal domain CEW88_14300 PF00501 AMP-binding enzyme CEW88_14310 PF00668 Condensation domain CEW88_14310 PF00975 Thioesterase domain CEW88_14310 PF00550 Phosphopantetheine attachment site CEW88_14310 PF00501 AMP-binding enzyme CEW88_14325 PF01032 FecCD transport family CEW88_14330 PF00005 ABC transporter CEW88_14340 PF01555 DNA methylase CEW88_14340 PF18755 Restriction Enzyme Adenine Methylase Associated CEW88_14345 PF01351 Ribonuclease HII CEW88_14350 PF02899 Phage integrase, N-terminal SAM-like domain CEW88_14350 PF00589 Phage integrase family CEW88_14365 PF00072 Response regulator receiver domain CEW88_14365 PF00486 Transcriptional regulatory protein, C terminal CEW88_14370 PF00582 Universal stress protein family CEW88_14375 PF16363 GDP-mannose 4,6 dehydratase CEW88_14395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CEW88_14395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CEW88_14395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CEW88_14405 PF00534 Glycosyl transferases group 1 CEW88_14405 PF13439 Glycosyltransferase Family 4 CEW88_14410 PF00534 Glycosyl transferases group 1 CEW88_14410 PF13579 Glycosyl transferase 4-like domain CEW88_14425 PF00296 Luciferase-like monooxygenase CEW88_14430 PF00857 Isochorismatase family CEW88_14435 PF01042 Endoribonuclease L-PSP CEW88_14440 PF00561 alpha/beta hydrolase fold CEW88_14455 PF02630 SCO1/SenC CEW88_14460 PF13406 Transglycosylase SLT domain CEW88_14500 PF00860 Permease family CEW88_14505 PF04115 Ureidoglycolate lyase CEW88_14510 PF07883 Cupin domain CEW88_14510 PF05899 Protein of unknown function (DUF861) CEW88_14520 PF01668 SmpB protein CEW88_14525 PF00581 Rhodanese-like domain CEW88_14530 PF00155 Aminotransferase class I and II CEW88_14545 PF01791 DeoC/LacD family aldolase CEW88_14550 PF00171 Aldehyde dehydrogenase family CEW88_14560 PF02590 Predicted SPOUT methyltransferase CEW88_14565 PF02673 Bacitracin resistance protein BacA CEW88_14570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CEW88_14570 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_14580 PF01493 GXGXG motif CEW88_14580 PF00310 Glutamine amidotransferases class-II CEW88_14580 PF01645 Conserved region in glutamate synthase CEW88_14580 PF04898 Glutamate synthase central domain CEW88_14585 PF00912 Transglycosylase CEW88_14590 PF00043 Glutathione S-transferase, C-terminal domain CEW88_14590 PF13417 Glutathione S-transferase, N-terminal domain CEW88_14595 PF00857 Isochorismatase family CEW88_14595 PF00550 Phosphopantetheine attachment site CEW88_14600 PF00425 chorismate binding enzyme CEW88_14610 PF03466 LysR substrate binding domain CEW88_14610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_14620 PF04143 Sulphur transport CEW88_14630 PF07690 Major Facilitator Superfamily CEW88_14635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CEW88_14645 PF02224 Cytidylate kinase CEW88_14650 PF00248 Aldo/keto reductase family CEW88_14660 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CEW88_14660 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CEW88_14675 PF13462 Thioredoxin CEW88_14685 PF14815 NUDIX domain CEW88_14685 PF00730 HhH-GPD superfamily base excision DNA repair protein CEW88_14690 PF00487 Fatty acid desaturase CEW88_14695 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CEW88_14700 PF02885 Glycosyl transferase family, helical bundle domain CEW88_14700 PF00591 Glycosyl transferase family, a/b domain CEW88_14700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CEW88_14705 PF01676 Metalloenzyme superfamily CEW88_14710 PF00962 Adenosine/AMP deaminase CEW88_14730 PF00445 Ribonuclease T2 family CEW88_14750 PF02132 RecR protein CEW88_14750 PF13662 Toprim domain CEW88_14755 PF02575 YbaB/EbfC DNA-binding family CEW88_14765 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CEW88_14765 PF12169 DNA polymerase III subunits gamma and tau domain III CEW88_14765 PF12170 DNA polymerase III tau subunit V interacting with alpha CEW88_14775 PF04228 Putative neutral zinc metallopeptidase CEW88_14790 PF00753 Metallo-beta-lactamase superfamily CEW88_14790 PF10996 Beta-Casp domain CEW88_14790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CEW88_14795 PF00391 PEP-utilising enzyme, mobile domain CEW88_14795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CEW88_14795 PF02896 PEP-utilising enzyme, TIM barrel domain CEW88_14800 PF02256 Iron hydrogenase small subunit CEW88_14800 PF00037 4Fe-4S binding domain CEW88_14800 PF02906 Iron only hydrogenase large subunit, C-terminal domain CEW88_14800 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CEW88_14805 PF01235 Sodium:alanine symporter family CEW88_14810 PF01037 Lrp/AsnC ligand binding domain CEW88_14815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CEW88_14815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CEW88_14825 PF01761 3-dehydroquinate synthase CEW88_14850 PF01026 TatD related DNase CEW88_14865 PF00005 ABC transporter CEW88_14870 PF02653 Branched-chain amino acid transport system / permease component CEW88_14875 PF13407 Periplasmic binding protein domain CEW88_14880 PF00480 ROK family CEW88_14890 PF03150 Di-haem cytochrome c peroxidase CEW88_14890 PF00034 Cytochrome c CEW88_14895 PF08402 TOBE domain CEW88_14895 PF00005 ABC transporter CEW88_14900 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_14905 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_14915 PF00005 ABC transporter CEW88_14920 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_14920 PF00005 ABC transporter CEW88_14930 PF02653 Branched-chain amino acid transport system / permease component CEW88_14940 PF14403 Circularly permuted ATP-grasp type 2 CEW88_14960 PF03975 CheD chemotactic sensory transduction CEW88_14965 PF01339 CheB methylesterase CEW88_14965 PF00072 Response regulator receiver domain CEW88_14975 PF00072 Response regulator receiver domain CEW88_14980 PF03705 CheR methyltransferase, all-alpha domain CEW88_14980 PF01739 CheR methyltransferase, SAM binding domain CEW88_14985 PF01584 CheW-like domain CEW88_14990 PF02895 Signal transducing histidine kinase, homodimeric domain CEW88_14990 PF01584 CheW-like domain CEW88_14990 PF01627 Hpt domain CEW88_14990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_14995 PF00072 Response regulator receiver domain CEW88_15005 PF00205 Thiamine pyrophosphate enzyme, central domain CEW88_15005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CEW88_15005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CEW88_15020 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_15030 PF00005 ABC transporter CEW88_15035 PF01032 FecCD transport family CEW88_15045 PF07715 TonB-dependent Receptor Plug Domain CEW88_15045 PF00593 TonB dependent receptor CEW88_15055 PF00005 ABC transporter CEW88_15065 PF00245 Alkaline phosphatase CEW88_15075 PF13407 Periplasmic binding protein domain CEW88_15080 PF02653 Branched-chain amino acid transport system / permease component CEW88_15085 PF00005 ABC transporter CEW88_15090 PF02837 Glycosyl hydrolases family 2, sugar binding domain CEW88_15090 PF00703 Glycosyl hydrolases family 2 CEW88_15090 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain CEW88_15090 PF16990 Carbohydrate binding module (family 35) CEW88_15100 PF05532 CsbD-like CEW88_15125 PF00986 DNA gyrase B subunit, carboxyl terminus CEW88_15125 PF01751 Toprim domain CEW88_15125 PF00204 DNA gyrase B CEW88_15125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_15145 PF00186 Dihydrofolate reductase CEW88_15150 PF00303 Thymidylate synthase CEW88_15165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_15180 PF12802 MarR family CEW88_15190 PF01381 Helix-turn-helix CEW88_15210 PF00884 Sulfatase CEW88_15210 PF12411 Choline sulfatase enzyme C terminal CEW88_15215 PF02028 BCCT, betaine/carnitine/choline family transporter CEW88_15225 PF00459 Inositol monophosphatase family CEW88_15240 PF00582 Universal stress protein family CEW88_15250 PF16868 NMT1-like family CEW88_15265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_15265 PF00005 ABC transporter CEW88_15270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_15270 PF00005 ABC transporter CEW88_15280 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_15290 PF07729 FCD domain CEW88_15290 PF00392 Bacterial regulatory proteins, gntR family CEW88_15295 PF04955 HupE / UreJ protein CEW88_15305 PF00072 Response regulator receiver domain CEW88_15310 PF03705 CheR methyltransferase, all-alpha domain CEW88_15310 PF08448 PAS fold CEW88_15310 PF01339 CheB methylesterase CEW88_15310 PF01739 CheR methyltransferase, SAM binding domain CEW88_15315 PF13581 Histidine kinase-like ATPase domain CEW88_15315 PF07536 HWE histidine kinase CEW88_15315 PF13426 PAS domain CEW88_15345 PF00202 Aminotransferase class-III CEW88_15350 PF00171 Aldehyde dehydrogenase family CEW88_15355 PF01037 Lrp/AsnC ligand binding domain CEW88_15365 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_15370 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CEW88_15375 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_15380 PF00582 Universal stress protein family CEW88_15390 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_15395 PF02423 Ornithine cyclodeaminase/mu-crystallin family CEW88_15400 PF01321 Creatinase/Prolidase N-terminal domain CEW88_15400 PF00557 Metallopeptidase family M24 CEW88_15415 PF01702 Queuine tRNA-ribosyltransferase CEW88_15420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CEW88_15425 PF02190 ATP-dependent protease La (LON) substrate-binding domain CEW88_15425 PF05362 Lon protease (S16) C-terminal proteolytic domain CEW88_15425 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_15435 PF00376 MerR family regulatory protein CEW88_15435 PF09278 MerR, DNA binding CEW88_15465 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CEW88_15540 PF04860 Phage portal protein CEW88_15545 PF00574 Clp protease CEW88_15675 PF13737 Transposase DDE domain CEW88_15685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_15690 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CEW88_15695 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_15710 PF13416 Bacterial extracellular solute-binding protein CEW88_15715 PF00005 ABC transporter CEW88_15715 PF08402 TOBE domain CEW88_15720 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15725 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15730 PF03576 Peptidase family S58 CEW88_15735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_15735 PF00005 ABC transporter CEW88_15740 PF03069 Acetamidase/Formamidase family CEW88_15745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_15750 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15780 PF04945 YHS domain CEW88_15795 PF00394 Multicopper oxidase CEW88_15795 PF07732 Multicopper oxidase CEW88_15795 PF07731 Multicopper oxidase CEW88_15800 PF07731 Multicopper oxidase CEW88_15800 PF00394 Multicopper oxidase CEW88_15800 PF10518 TAT (twin-arginine translocation) pathway signal sequence CEW88_15800 PF07732 Multicopper oxidase CEW88_15810 PF00384 Molybdopterin oxidoreductase CEW88_15810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CEW88_15810 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CEW88_15815 PF00480 ROK family CEW88_15820 PF01547 Bacterial extracellular solute-binding protein CEW88_15825 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15830 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_15835 PF14698 Argininosuccinate lyase C-terminal CEW88_15835 PF00206 Lyase CEW88_15840 PF00005 ABC transporter CEW88_15840 PF17912 MalK OB fold domain CEW88_15845 PF00480 ROK family CEW88_15850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CEW88_15855 PF00392 Bacterial regulatory proteins, gntR family CEW88_15855 PF07729 FCD domain CEW88_15870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_15875 PF02502 Ribose/Galactose Isomerase CEW88_15880 PF00175 Oxidoreductase NAD-binding domain CEW88_15880 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_15880 PF00970 Oxidoreductase FAD-binding domain CEW88_15890 PF03466 LysR substrate binding domain CEW88_15890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_15895 PF08669 Glycine cleavage T-protein C-terminal barrel domain CEW88_15895 PF01571 Aminomethyltransferase folate-binding domain CEW88_15895 PF16350 FAD dependent oxidoreductase central domain CEW88_15895 PF01266 FAD dependent oxidoreductase CEW88_15900 PF01012 Electron transfer flavoprotein domain CEW88_15900 PF00766 Electron transfer flavoprotein FAD-binding domain CEW88_15905 PF01012 Electron transfer flavoprotein domain CEW88_15910 PF10114 Sensory domain found in PocR CEW88_15910 PF12833 Helix-turn-helix domain CEW88_15915 PF02028 BCCT, betaine/carnitine/choline family transporter CEW88_15920 PF01266 FAD dependent oxidoreductase CEW88_15930 PF01571 Aminomethyltransferase folate-binding domain CEW88_15930 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_15930 PF17806 Sarcosine oxidase A3 domain CEW88_15930 PF08669 Glycine cleavage T-protein C-terminal barrel domain CEW88_15940 PF00464 Serine hydroxymethyltransferase CEW88_15945 PF00551 Formyl transferase CEW88_15950 PF01070 FMN-dependent dehydrogenase CEW88_15955 PF01699 Sodium/calcium exchanger protein CEW88_15960 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_15960 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_15970 PF00296 Luciferase-like monooxygenase CEW88_15975 PF00248 Aldo/keto reductase family CEW88_15980 PF01613 Flavin reductase like domain CEW88_15990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_16000 PF03601 Conserved hypothetical protein 698 CEW88_16005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16005 PF03466 LysR substrate binding domain CEW88_16020 PF00884 Sulfatase CEW88_16020 PF16347 Domain of unknown function (DUF4976) CEW88_16050 PF06426 Serine acetyltransferase, N-terminal CEW88_16050 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_16060 PF01546 Peptidase family M20/M25/M40 CEW88_16060 PF07687 Peptidase dimerisation domain CEW88_16065 PF03466 LysR substrate binding domain CEW88_16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CEW88_16070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CEW88_16075 PF00171 Aldehyde dehydrogenase family CEW88_16090 PF02515 CoA-transferase family III CEW88_16095 PF00732 GMC oxidoreductase CEW88_16095 PF05199 GMC oxidoreductase CEW88_16100 PF03466 LysR substrate binding domain CEW88_16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16115 PF10503 Esterase PHB depolymerase CEW88_16130 PF13737 Transposase DDE domain CEW88_16150 PF12344 Ultra-violet resistance protein B CEW88_16150 PF04851 Type III restriction enzyme, res subunit CEW88_16150 PF02151 UvrB/uvrC motif CEW88_16150 PF17757 UvrB interaction domain CEW88_16150 PF00271 Helicase conserved C-terminal domain CEW88_16175 PF01594 AI-2E family transporter CEW88_16180 PF13091 PLD-like domain CEW88_16225 PF08402 TOBE domain CEW88_16225 PF00005 ABC transporter CEW88_16230 PF13416 Bacterial extracellular solute-binding protein CEW88_16235 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_16240 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_16245 PF00005 ABC transporter CEW88_16255 PF05025 RbsD / FucU transport protein family CEW88_16265 PF00512 His Kinase A (phospho-acceptor) domain CEW88_16265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_16265 PF00360 Phytochrome region CEW88_16265 PF08446 PAS fold CEW88_16265 PF01590 GAF domain CEW88_16275 PF07733 Bacterial DNA polymerase III alpha NTPase domain CEW88_16275 PF01336 OB-fold nucleic acid binding domain CEW88_16275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CEW88_16275 PF14579 Helix-hairpin-helix motif CEW88_16275 PF02811 PHP domain CEW88_16290 PF04377 Arginine-tRNA-protein transferase, C terminus CEW88_16290 PF04376 Arginine-tRNA-protein transferase, N terminus CEW88_16315 PF03710 Glutamate-ammonia ligase adenylyltransferase CEW88_16315 PF08335 GlnD PII-uridylyltransferase CEW88_16325 PF01081 KDPG and KHG aldolase CEW88_16330 PF00920 Dehydratase family CEW88_16340 PF17785 PUA-like domain CEW88_16340 PF10672 S-adenosylmethionine-dependent methyltransferase CEW88_16350 PF03334 Na+/H+ antiporter subunit CEW88_16355 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CEW88_16365 PF00361 Proton-conducting membrane transporter CEW88_16370 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CEW88_16375 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CEW88_16375 PF13244 Domain of unknown function (DUF4040) CEW88_16375 PF00361 Proton-conducting membrane transporter CEW88_16375 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CEW88_16380 PF08402 TOBE domain CEW88_16380 PF00005 ABC transporter CEW88_16405 PF00043 Glutathione S-transferase, C-terminal domain CEW88_16405 PF13417 Glutathione S-transferase, N-terminal domain CEW88_16430 PF00009 Elongation factor Tu GTP binding domain CEW88_16430 PF03144 Elongation factor Tu domain 2 CEW88_16430 PF16658 Class II release factor RF3, C-terminal domain CEW88_16445 PF00106 short chain dehydrogenase CEW88_16450 PF08713 DNA alkylation repair enzyme CEW88_16455 PF05145 Transition state regulatory protein AbrB CEW88_16460 PF00034 Cytochrome c CEW88_16465 PF07995 Glucose / Sorbosone dehydrogenase CEW88_16470 PF00155 Aminotransferase class I and II CEW88_16480 PF00034 Cytochrome c CEW88_16485 PF00174 Oxidoreductase molybdopterin binding domain CEW88_16490 PF00149 Calcineurin-like phosphoesterase CEW88_16490 PF02872 5'-nucleotidase, C-terminal domain CEW88_16520 PF02683 Cytochrome C biogenesis protein transmembrane region CEW88_16530 PF01022 Bacterial regulatory protein, arsR family CEW88_16535 PF04143 Sulphur transport CEW88_16545 PF00171 Aldehyde dehydrogenase family CEW88_16550 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_16555 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_16560 PF08402 TOBE domain CEW88_16560 PF00005 ABC transporter CEW88_16565 PF13416 Bacterial extracellular solute-binding protein CEW88_16570 PF03466 LysR substrate binding domain CEW88_16570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16580 PF01037 Lrp/AsnC ligand binding domain CEW88_16595 PF00005 ABC transporter CEW88_16610 PF03466 LysR substrate binding domain CEW88_16610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16615 PF07969 Amidohydrolase family CEW88_16625 PF01266 FAD dependent oxidoreductase CEW88_16625 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CEW88_16635 PF07687 Peptidase dimerisation domain CEW88_16635 PF01546 Peptidase family M20/M25/M40 CEW88_16645 PF00892 EamA-like transporter family CEW88_16650 PF00158 Sigma-54 interaction domain CEW88_16650 PF00072 Response regulator receiver domain CEW88_16650 PF02954 Bacterial regulatory protein, Fis family CEW88_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_16655 PF00512 His Kinase A (phospho-acceptor) domain CEW88_16670 PF16868 NMT1-like family CEW88_16675 PF00330 Aconitase family (aconitate hydratase) CEW88_16675 PF11791 Aconitate B N-terminal domain CEW88_16675 PF06434 Aconitate hydratase 2 N-terminus CEW88_16685 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_16685 PF01799 [2Fe-2S] binding domain CEW88_16685 PF10518 TAT (twin-arginine translocation) pathway signal sequence CEW88_16690 PF03450 CO dehydrogenase flavoprotein C-terminal domain CEW88_16690 PF00941 FAD binding domain in molybdopterin dehydrogenase CEW88_16695 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_16695 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_16700 PF00005 ABC transporter CEW88_16700 PF00664 ABC transporter transmembrane region CEW88_16705 PF00534 Glycosyl transferases group 1 CEW88_16705 PF13439 Glycosyltransferase Family 4 CEW88_16710 PF06463 Molybdenum Cofactor Synthesis C CEW88_16710 PF04055 Radical SAM superfamily CEW88_16715 PF01757 Acyltransferase family CEW88_16720 PF12002 MgsA AAA+ ATPase C terminal CEW88_16720 PF16193 AAA C-terminal domain CEW88_16720 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_16725 PF01557 Fumarylacetoacetate (FAA) hydrolase family CEW88_16730 PF01070 FMN-dependent dehydrogenase CEW88_16735 PF02535 ZIP Zinc transporter CEW88_16740 PF01063 Amino-transferase class IV CEW88_16755 PF01106 NifU-like domain CEW88_16760 PF00814 Glycoprotease family CEW88_16790 PF01925 Sulfite exporter TauE/SafE CEW88_16805 PF01546 Peptidase family M20/M25/M40 CEW88_16805 PF07687 Peptidase dimerisation domain CEW88_16815 PF00072 Response regulator receiver domain CEW88_16815 PF00486 Transcriptional regulatory protein, C terminal CEW88_16820 PF00072 Response regulator receiver domain CEW88_16820 PF13188 PAS domain CEW88_16820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_16820 PF00512 His Kinase A (phospho-acceptor) domain CEW88_16820 PF08448 PAS fold CEW88_16825 PF00501 AMP-binding enzyme CEW88_16830 PF00005 ABC transporter CEW88_16830 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_16835 PF02653 Branched-chain amino acid transport system / permease component CEW88_16855 PF00005 ABC transporter CEW88_16860 PF02834 LigT like Phosphoesterase CEW88_16865 PF14535 AMP-binding enzyme C-terminal domain CEW88_16865 PF00501 AMP-binding enzyme CEW88_16880 PF16921 Tex protein YqgF-like domain CEW88_16880 PF09371 Tex-like protein N-terminal domain CEW88_16880 PF17674 HHH domain CEW88_16880 PF00575 S1 RNA binding domain CEW88_16885 PF00196 Bacterial regulatory proteins, luxR family CEW88_16885 PF00072 Response regulator receiver domain CEW88_16890 PF07730 Histidine kinase CEW88_16890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_16895 PF13407 Periplasmic binding protein domain CEW88_16900 PF00005 ABC transporter CEW88_16905 PF02653 Branched-chain amino acid transport system / permease component CEW88_16910 PF02653 Branched-chain amino acid transport system / permease component CEW88_16915 PF08450 SMP-30/Gluconolactonase/LRE-like region CEW88_16920 PF01965 DJ-1/PfpI family CEW88_16925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16925 PF03466 LysR substrate binding domain CEW88_16930 PF00440 Bacterial regulatory proteins, tetR family CEW88_16930 PF13977 BetI-type transcriptional repressor, C-terminal CEW88_16935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_16935 PF03466 LysR substrate binding domain CEW88_16955 PF18146 Damage-inducible protein CinA KH domain CEW88_16955 PF00994 Probable molybdopterin binding domain CEW88_16955 PF02464 Competence-damaged protein CEW88_16960 PF01156 Inosine-uridine preferring nucleoside hydrolase CEW88_16965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_16970 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_16980 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_16985 PF08501 Shikimate dehydrogenase substrate binding domain CEW88_16985 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CEW88_17000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_17010 PF07715 TonB-dependent Receptor Plug Domain CEW88_17010 PF00593 TonB dependent receptor CEW88_17015 PF00268 Ribonucleotide reductase, small chain CEW88_17020 PF08343 Ribonucleotide reductase N-terminal CEW88_17020 PF02867 Ribonucleotide reductase, barrel domain CEW88_17020 PF00317 Ribonucleotide reductase, all-alpha domain CEW88_17025 PF07972 NrdI Flavodoxin like CEW88_17035 PF00710 Asparaginase, N-terminal CEW88_17035 PF17763 Glutaminase/Asparaginase C-terminal domain CEW88_17040 PF00141 Peroxidase CEW88_17045 PF00392 Bacterial regulatory proteins, gntR family CEW88_17045 PF07729 FCD domain CEW88_17050 PF01370 NAD dependent epimerase/dehydratase family CEW88_17055 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_17075 PF03738 Glutathionylspermidine synthase preATP-grasp CEW88_17080 PF06693 Protein of unknown function (DUF1190) CEW88_17095 PF04304 Protein of unknown function (DUF454) CEW88_17105 PF01266 FAD dependent oxidoreductase CEW88_17115 PF01226 Formate/nitrite transporter CEW88_17120 PF00141 Peroxidase CEW88_17125 PF13382 Adenine deaminase C-terminal domain CEW88_17125 PF01979 Amidohydrolase family CEW88_17130 PF01156 Inosine-uridine preferring nucleoside hydrolase CEW88_17135 PF00005 ABC transporter CEW88_17135 PF08402 TOBE domain CEW88_17145 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17155 PF00356 Bacterial regulatory proteins, lacI family CEW88_17160 PF02405 Permease MlaE CEW88_17165 PF00005 ABC transporter CEW88_17185 PF00005 ABC transporter CEW88_17185 PF00571 CBS domain CEW88_17190 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CEW88_17200 PF13977 BetI-type transcriptional repressor, C-terminal CEW88_17200 PF00440 Bacterial regulatory proteins, tetR family CEW88_17205 PF00171 Aldehyde dehydrogenase family CEW88_17210 PF00732 GMC oxidoreductase CEW88_17210 PF05199 GMC oxidoreductase CEW88_17220 PF00005 ABC transporter CEW88_17220 PF09383 NIL domain CEW88_17225 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17230 PF03180 NLPA lipoprotein CEW88_17240 PF17806 Sarcosine oxidase A3 domain CEW88_17240 PF08669 Glycine cleavage T-protein C-terminal barrel domain CEW88_17240 PF01571 Aminomethyltransferase folate-binding domain CEW88_17240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_17250 PF01266 FAD dependent oxidoreductase CEW88_17265 PF00501 AMP-binding enzyme CEW88_17265 PF13193 AMP-binding enzyme C-terminal domain CEW88_17265 PF16177 Acetyl-coenzyme A synthetase N-terminus CEW88_17270 PF00390 Malic enzyme, N-terminal domain CEW88_17270 PF03949 Malic enzyme, NAD binding domain CEW88_17270 PF01515 Phosphate acetyl/butaryl transferase CEW88_17280 PF02833 DHHA2 domain CEW88_17280 PF01368 DHH family CEW88_17285 PF01263 Aldose 1-epimerase CEW88_17295 PF01575 MaoC like domain CEW88_17300 PF03358 NADPH-dependent FMN reductase CEW88_17305 PF00440 Bacterial regulatory proteins, tetR family CEW88_17305 PF16925 Tetracyclin repressor-like, C-terminal domain CEW88_17310 PF14765 Polyketide synthase dehydratase CEW88_17310 PF08659 KR domain CEW88_17310 PF00109 Beta-ketoacyl synthase, N-terminal domain CEW88_17310 PF09277 Erythronolide synthase, docking CEW88_17310 PF08990 Erythronolide synthase docking CEW88_17310 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_17310 PF00550 Phosphopantetheine attachment site CEW88_17310 PF16197 Ketoacyl-synthetase C-terminal extension CEW88_17310 PF02801 Beta-ketoacyl synthase, C-terminal domain CEW88_17310 PF00698 Acyl transferase domain CEW88_17315 PF01925 Sulfite exporter TauE/SafE CEW88_17320 PF00557 Metallopeptidase family M24 CEW88_17325 PF00924 Mechanosensitive ion channel CEW88_17325 PF05552 Conserved TM helix CEW88_17330 PF17746 SfsA N-terminal OB domain CEW88_17330 PF03749 Sugar fermentation stimulation protein RE domain CEW88_17335 PF00455 DeoR C terminal sensor domain CEW88_17335 PF08220 DeoR-like helix-turn-helix domain CEW88_17340 PF01266 FAD dependent oxidoreductase CEW88_17340 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CEW88_17345 PF17912 MalK OB fold domain CEW88_17345 PF00005 ABC transporter CEW88_17350 PF00005 ABC transporter CEW88_17355 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17360 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_17375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_17385 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17390 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17400 PF00005 ABC transporter CEW88_17400 PF08402 TOBE domain CEW88_17405 PF00196 Bacterial regulatory proteins, luxR family CEW88_17415 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_17425 PF00072 Response regulator receiver domain CEW88_17425 PF00486 Transcriptional regulatory protein, C terminal CEW88_17430 PF13188 PAS domain CEW88_17430 PF00072 Response regulator receiver domain CEW88_17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_17430 PF00512 His Kinase A (phospho-acceptor) domain CEW88_17430 PF08448 PAS fold CEW88_17445 PF01494 FAD binding domain CEW88_17480 PF13378 Enolase C-terminal domain-like CEW88_17480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CEW88_17500 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CEW88_17500 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CEW88_17510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_17520 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_17525 PF07995 Glucose / Sorbosone dehydrogenase CEW88_17535 PF02091 Glycyl-tRNA synthetase alpha subunit CEW88_17545 PF03900 Porphobilinogen deaminase, C-terminal domain CEW88_17545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CEW88_17550 PF01208 Uroporphyrinogen decarboxylase (URO-D) CEW88_17555 PF00892 EamA-like transporter family CEW88_17560 PF00005 ABC transporter CEW88_17565 PF01061 ABC-2 type transporter CEW88_17585 PF13737 Transposase DDE domain CEW88_17605 PF11741 AMIN domain CEW88_17605 PF01520 N-acetylmuramoyl-L-alanine amidase CEW88_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_17625 PF00512 His Kinase A (phospho-acceptor) domain CEW88_17625 PF08448 PAS fold CEW88_17625 PF13188 PAS domain CEW88_17625 PF00072 Response regulator receiver domain CEW88_17630 PF04551 GcpE protein CEW88_17640 PF00155 Aminotransferase class I and II CEW88_17665 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_17670 PF01979 Amidohydrolase family CEW88_17675 PF00156 Phosphoribosyl transferase domain CEW88_17680 PF03796 DnaB-like helicase C terminal domain CEW88_17680 PF00772 DnaB-like helicase N terminal domain CEW88_17690 PF01168 Alanine racemase, N-terminal domain CEW88_17690 PF00842 Alanine racemase, C-terminal domain CEW88_17695 PF02405 Permease MlaE CEW88_17700 PF00005 ABC transporter CEW88_17720 PF18073 Rubredoxin metal binding domain CEW88_17720 PF06745 KaiC CEW88_17730 PF13537 Glutamine amidotransferase domain CEW88_17730 PF00156 Phosphoribosyl transferase domain CEW88_17740 PF00106 short chain dehydrogenase CEW88_17750 PF01975 Survival protein SurE CEW88_17770 PF06481 COX Aromatic Rich Motif CEW88_17770 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CEW88_17775 PF00115 Cytochrome C and Quinol oxidase polypeptide I CEW88_17780 PF00510 Cytochrome c oxidase subunit III CEW88_17785 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CEW88_17795 PF07690 Major Facilitator Superfamily CEW88_17800 PF01386 Ribosomal L25p family CEW88_17800 PF14693 Ribosomal protein TL5, C-terminal domain CEW88_17810 PF01195 Peptidyl-tRNA hydrolase CEW88_17825 PF00491 Arginase family CEW88_17830 PF03466 LysR substrate binding domain CEW88_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_17845 PF05525 Branched-chain amino acid transport protein CEW88_17850 PF07536 HWE histidine kinase CEW88_17850 PF13426 PAS domain CEW88_17855 PF00270 DEAD/DEAH box helicase CEW88_17855 PF00271 Helicase conserved C-terminal domain CEW88_17855 PF03461 TRCF domain CEW88_17855 PF17757 UvrB interaction domain CEW88_17855 PF02559 CarD-like/TRCF domain CEW88_17865 PF00490 Delta-aminolevulinic acid dehydratase CEW88_17875 PF06233 Usg-like family CEW88_17880 PF00521 DNA gyrase/topoisomerase IV, subunit A CEW88_17880 PF03989 DNA gyrase C-terminal domain, beta-propeller CEW88_17900 PF05114 Protein of unknown function (DUF692) CEW88_17910 PF04542 Sigma-70 region 2 CEW88_17910 PF04545 Sigma-70, region 4 CEW88_17930 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CEW88_17930 PF00128 Alpha amylase, catalytic domain CEW88_17930 PF02806 Alpha amylase, C-terminal all-beta domain CEW88_17940 PF03193 RsgA GTPase CEW88_17945 PF00106 short chain dehydrogenase CEW88_17950 PF07364 Metallopeptidase family M81 CEW88_17950 PF07171 MlrC C-terminus CEW88_17955 PF00480 ROK family CEW88_17960 PF01979 Amidohydrolase family CEW88_17965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_17965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_17970 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17975 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_17980 PF01547 Bacterial extracellular solute-binding protein CEW88_17985 PF08402 TOBE domain CEW88_17985 PF00005 ABC transporter CEW88_17990 PF14031 Putative serine dehydratase domain CEW88_17990 PF01168 Alanine racemase, N-terminal domain CEW88_18000 PF01418 Helix-turn-helix domain, rpiR family CEW88_18000 PF01380 SIS domain CEW88_18015 PF03932 CutC family CEW88_18020 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CEW88_18025 PF01042 Endoribonuclease L-PSP CEW88_18040 PF05199 GMC oxidoreductase CEW88_18040 PF00732 GMC oxidoreductase CEW88_18045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_18045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_18065 PF03449 Transcription elongation factor, N-terminal CEW88_18065 PF01272 Transcription elongation factor, GreA/GreB, C-term CEW88_18100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_18100 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_18100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_18100 PF12806 Acetyl-CoA dehydrogenase C-terminal like CEW88_18105 PF01300 Telomere recombination CEW88_18105 PF03481 Putative GTP-binding controlling metal-binding CEW88_18110 PF02622 Uncharacterized ACR, COG1678 CEW88_18130 PF00994 Probable molybdopterin binding domain CEW88_18140 PF03167 Uracil DNA glycosylase superfamily CEW88_18145 PF01475 Ferric uptake regulator family CEW88_18150 PF01297 Zinc-uptake complex component A periplasmic CEW88_18155 PF00005 ABC transporter CEW88_18160 PF00950 ABC 3 transport family CEW88_18165 PF00950 ABC 3 transport family CEW88_18170 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_18170 PF00107 Zinc-binding dehydrogenase CEW88_18175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_18175 PF00005 ABC transporter CEW88_18180 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18180 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_18190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_18195 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_18195 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_18200 PF05853 beta-keto acid cleavage enzyme CEW88_18205 PF01965 DJ-1/PfpI family CEW88_18205 PF12833 Helix-turn-helix domain CEW88_18210 PF07859 alpha/beta hydrolase fold CEW88_18220 PF01384 Phosphate transporter family CEW88_18235 PF07729 FCD domain CEW88_18235 PF00392 Bacterial regulatory proteins, gntR family CEW88_18240 PF13458 Periplasmic binding protein CEW88_18245 PF02653 Branched-chain amino acid transport system / permease component CEW88_18255 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_18255 PF00005 ABC transporter CEW88_18260 PF00005 ABC transporter CEW88_18270 PF05853 beta-keto acid cleavage enzyme CEW88_18275 PF00106 short chain dehydrogenase CEW88_18280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_18280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_18285 PF13419 Haloacid dehalogenase-like hydrolase CEW88_18290 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18295 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18300 PF00005 ABC transporter CEW88_18310 PF08220 DeoR-like helix-turn-helix domain CEW88_18310 PF00455 DeoR C terminal sensor domain CEW88_18335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_18335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_18340 PF13407 Periplasmic binding protein domain CEW88_18345 PF02653 Branched-chain amino acid transport system / permease component CEW88_18350 PF00005 ABC transporter CEW88_18355 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_18355 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_18365 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CEW88_18365 PF00356 Bacterial regulatory proteins, lacI family CEW88_18370 PF00356 Bacterial regulatory proteins, lacI family CEW88_18375 PF13416 Bacterial extracellular solute-binding protein CEW88_18380 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18385 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18390 PF04616 Glycosyl hydrolases family 43 CEW88_18390 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CEW88_18395 PF00005 ABC transporter CEW88_18395 PF08402 TOBE domain CEW88_18400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_18400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_18445 PF00107 Zinc-binding dehydrogenase CEW88_18445 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_18450 PF01965 DJ-1/PfpI family CEW88_18450 PF12833 Helix-turn-helix domain CEW88_18465 PF00884 Sulfatase CEW88_18475 PF01425 Amidase CEW88_18480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_18485 PF00005 ABC transporter CEW88_18485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_18495 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_18505 PF00596 Class II Aldolase and Adducin N-terminal domain CEW88_18520 PF13411 MerR HTH family regulatory protein CEW88_18535 PF02371 Transposase IS116/IS110/IS902 family CEW88_18535 PF01548 Transposase CEW88_18545 PF07883 Cupin domain CEW88_18555 PF13737 Transposase DDE domain CEW88_18585 PF05426 Alginate lyase CEW88_18600 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX CEW88_18600 PF16824 C-terminal carbohydrate-binding module CEW88_18610 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX CEW88_18615 PF03062 MBOAT, membrane-bound O-acyltransferase family CEW88_18625 PF01050 Mannose-6-phosphate isomerase CEW88_18625 PF00483 Nucleotidyl transferase CEW88_18640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CEW88_18640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CEW88_18640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CEW88_18645 PF00196 Bacterial regulatory proteins, luxR family CEW88_18645 PF00072 Response regulator receiver domain CEW88_18655 PF13737 Transposase DDE domain CEW88_18670 PF02659 Putative manganese efflux pump CEW88_18680 PF05717 IS66 Orf2 like protein CEW88_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_18700 PF03466 LysR substrate binding domain CEW88_18710 PF13737 Transposase DDE domain CEW88_18715 PF13378 Enolase C-terminal domain-like CEW88_18715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CEW88_18730 PF13737 Transposase DDE domain CEW88_18745 PF07690 Major Facilitator Superfamily CEW88_18750 PF02082 Transcriptional regulator CEW88_18755 PF00884 Sulfatase CEW88_18760 PF02371 Transposase IS116/IS110/IS902 family CEW88_18760 PF01548 Transposase CEW88_18795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_18795 PF00005 ABC transporter CEW88_18800 PF00005 ABC transporter CEW88_18800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_18810 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_18815 PF01266 FAD dependent oxidoreductase CEW88_18820 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_18820 PF04324 BFD-like [2Fe-2S] binding domain CEW88_18830 PF01266 FAD dependent oxidoreductase CEW88_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_18835 PF03466 LysR substrate binding domain CEW88_18840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_18845 PF12462 DNA helicase IV / RNA helicase N terminal CEW88_18845 PF13361 UvrD-like helicase C-terminal domain CEW88_18845 PF00580 UvrD/REP helicase N-terminal domain CEW88_18850 PF13737 Transposase DDE domain CEW88_18860 PF00149 Calcineurin-like phosphoesterase CEW88_18860 PF12320 Type 5 capsule protein repressor C-terminal domain CEW88_18870 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CEW88_18895 PF01638 HxlR-like helix-turn-helix CEW88_18905 PF01548 Transposase CEW88_18905 PF02371 Transposase IS116/IS110/IS902 family CEW88_18945 PF09339 IclR helix-turn-helix domain CEW88_18945 PF01614 Bacterial transcriptional regulator CEW88_18955 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_18970 PF02515 CoA-transferase family III CEW88_18980 PF03328 HpcH/HpaI aldolase/citrate lyase family CEW88_19015 PF03466 LysR substrate binding domain CEW88_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_19025 PF12833 Helix-turn-helix domain CEW88_19060 PF09339 IclR helix-turn-helix domain CEW88_19060 PF01614 Bacterial transcriptional regulator CEW88_19080 PF07729 FCD domain CEW88_19080 PF00392 Bacterial regulatory proteins, gntR family CEW88_19085 PF00326 Prolyl oligopeptidase family CEW88_19090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_19110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_19110 PF00005 ABC transporter CEW88_19115 PF00005 ABC transporter CEW88_19115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_19125 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_19130 PF02653 Branched-chain amino acid transport system / permease component CEW88_19140 PF00005 ABC transporter CEW88_19145 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_19145 PF00107 Zinc-binding dehydrogenase CEW88_19160 PF14031 Putative serine dehydratase domain CEW88_19160 PF01168 Alanine racemase, N-terminal domain CEW88_19165 PF02423 Ornithine cyclodeaminase/mu-crystallin family CEW88_19170 PF00171 Aldehyde dehydrogenase family CEW88_19185 PF00005 ABC transporter CEW88_19185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_19190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_19195 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_19200 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_19200 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_19205 PF13932 GidA associated domain CEW88_19205 PF01134 Glucose inhibited division protein A CEW88_19210 PF02423 Ornithine cyclodeaminase/mu-crystallin family CEW88_19215 PF13291 ACT domain CEW88_19215 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_19230 PF00202 Aminotransferase class-III CEW88_19240 PF01266 FAD dependent oxidoreductase CEW88_19245 PF13419 Haloacid dehalogenase-like hydrolase CEW88_19250 PF01546 Peptidase family M20/M25/M40 CEW88_19250 PF07687 Peptidase dimerisation domain CEW88_19260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_19265 PF01037 Lrp/AsnC ligand binding domain CEW88_19270 PF01266 FAD dependent oxidoreductase CEW88_19275 PF00180 Isocitrate/isopropylmalate dehydrogenase CEW88_19280 PF00171 Aldehyde dehydrogenase family CEW88_19290 PF00392 Bacterial regulatory proteins, gntR family CEW88_19290 PF07729 FCD domain CEW88_19295 PF00701 Dihydrodipicolinate synthetase family CEW88_19300 PF01565 FAD binding domain CEW88_19300 PF02913 FAD linked oxidases, C-terminal domain CEW88_19310 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_19315 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_19320 PF00248 Aldo/keto reductase family CEW88_19325 PF05025 RbsD / FucU transport protein family CEW88_19340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_19340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_19345 PF00248 Aldo/keto reductase family CEW88_19350 PF02734 DAK2 domain CEW88_19355 PF02733 Dak1 domain CEW88_19360 PF02653 Branched-chain amino acid transport system / permease component CEW88_19365 PF00005 ABC transporter CEW88_19370 PF13407 Periplasmic binding protein domain CEW88_19375 PF02653 Branched-chain amino acid transport system / permease component CEW88_19380 PF00356 Bacterial regulatory proteins, lacI family CEW88_19385 PF00356 Bacterial regulatory proteins, lacI family CEW88_19400 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_19410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_19410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_19415 PF13737 Transposase DDE domain CEW88_19430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_19430 PF00529 HlyD membrane-fusion protein of T1SS CEW88_19435 PF00873 AcrB/AcrD/AcrF family CEW88_19440 PF00072 Response regulator receiver domain CEW88_19440 PF00486 Transcriptional regulatory protein, C terminal CEW88_19445 PF00672 HAMP domain CEW88_19445 PF00512 His Kinase A (phospho-acceptor) domain CEW88_19445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_19450 PF00005 ABC transporter CEW88_19450 PF00664 ABC transporter transmembrane region CEW88_19460 PF00890 FAD binding domain CEW88_19460 PF14537 Cytochrome c3 CEW88_19465 PF00392 Bacterial regulatory proteins, gntR family CEW88_19465 PF07729 FCD domain CEW88_19475 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_19475 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_19485 PF04303 PrpF protein CEW88_19500 PF00486 Transcriptional regulatory protein, C terminal CEW88_19500 PF00072 Response regulator receiver domain CEW88_19505 PF00512 His Kinase A (phospho-acceptor) domain CEW88_19505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_19505 PF00672 HAMP domain CEW88_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_19520 PF03466 LysR substrate binding domain CEW88_19525 PF13005 zinc-finger binding domain of transposase IS66 CEW88_19525 PF03050 Transposase IS66 family CEW88_19525 PF13007 Transposase C of IS166 homeodomain CEW88_19525 PF13817 IS66 C-terminal element CEW88_19550 PF01654 Cytochrome bd terminal oxidase subunit I CEW88_19555 PF00155 Aminotransferase class I and II CEW88_19555 PF00392 Bacterial regulatory proteins, gntR family CEW88_19560 PF00155 Aminotransferase class I and II CEW88_19565 PF00155 Aminotransferase class I and II CEW88_19575 PF00155 Aminotransferase class I and II CEW88_19575 PF00392 Bacterial regulatory proteins, gntR family CEW88_19585 PF00795 Carbon-nitrogen hydrolase CEW88_19600 PF00586 AIR synthase related protein, N-terminal domain CEW88_19600 PF02769 AIR synthase related protein, C-terminal domain CEW88_19625 PF03466 LysR substrate binding domain CEW88_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_19630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CEW88_19635 PF01738 Dienelactone hydrolase family CEW88_19640 PF14542 GCN5-related N-acetyl-transferase CEW88_19645 PF02678 Pirin CEW88_19645 PF05726 Pirin C-terminal cupin domain CEW88_19650 PF00512 His Kinase A (phospho-acceptor) domain CEW88_19650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_19650 PF00672 HAMP domain CEW88_19665 PF07690 Major Facilitator Superfamily CEW88_19685 PF07238 PilZ domain CEW88_19685 PF00535 Glycosyl transferase family 2 CEW88_19685 PF03552 Cellulose synthase CEW88_19695 PF01270 Glycosyl hydrolases family 8 CEW88_19720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_19720 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_19725 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CEW88_19740 PF00119 ATP synthase A chain CEW88_19745 PF00137 ATP synthase subunit C CEW88_19750 PF00430 ATP synthase B/B' CF(0) CEW88_19755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_19755 PF00306 ATP synthase alpha/beta chain, C terminal domain CEW88_19755 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_19780 PF02469 Fasciclin domain CEW88_19790 PF04545 Sigma-70, region 4 CEW88_19790 PF04542 Sigma-70 region 2 CEW88_19800 PF00107 Zinc-binding dehydrogenase CEW88_19800 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_19805 PF01244 Membrane dipeptidase (Peptidase family M19) CEW88_19810 PF01112 Asparaginase CEW88_19825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_19840 PF00005 ABC transporter CEW88_19840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_19850 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_19855 PF00196 Bacterial regulatory proteins, luxR family CEW88_19855 PF00072 Response regulator receiver domain CEW88_19875 PF00196 Bacterial regulatory proteins, luxR family CEW88_19875 PF00072 Response regulator receiver domain CEW88_19880 PF02397 Bacterial sugar transferase CEW88_19895 PF00535 Glycosyl transferase family 2 CEW88_19900 PF00535 Glycosyl transferase family 2 CEW88_19905 PF13439 Glycosyltransferase Family 4 CEW88_19905 PF00534 Glycosyl transferases group 1 CEW88_19915 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_19920 PF00005 ABC transporter CEW88_19945 PF01292 Prokaryotic cytochrome b561 CEW88_19950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_19950 PF03466 LysR substrate binding domain CEW88_19955 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_19955 PF01799 [2Fe-2S] binding domain CEW88_19960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_19960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_19975 PF01979 Amidohydrolase family CEW88_19980 PF07883 Cupin domain CEW88_19980 PF05899 Protein of unknown function (DUF861) CEW88_19985 PF09339 IclR helix-turn-helix domain CEW88_19985 PF01614 Bacterial transcriptional regulator CEW88_19990 PF00266 Aminotransferase class-V CEW88_19995 PF00291 Pyridoxal-phosphate dependent enzyme CEW88_20005 PF02423 Ornithine cyclodeaminase/mu-crystallin family CEW88_20010 PF00860 Permease family CEW88_20015 PF04115 Ureidoglycolate lyase CEW88_20025 PF03466 LysR substrate binding domain CEW88_20025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_20035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_20035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_20045 PF01112 Asparaginase CEW88_20050 PF01522 Polysaccharide deacetylase CEW88_20075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_20080 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20085 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20085 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_20090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_20090 PF00005 ABC transporter CEW88_20095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_20095 PF00005 ABC transporter CEW88_20100 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CEW88_20105 PF00155 Aminotransferase class I and II CEW88_20110 PF00440 Bacterial regulatory proteins, tetR family CEW88_20110 PF13977 BetI-type transcriptional repressor, C-terminal CEW88_20115 PF00005 ABC transporter CEW88_20120 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_20125 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20130 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_20140 PF00107 Zinc-binding dehydrogenase CEW88_20140 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_20145 PF00596 Class II Aldolase and Adducin N-terminal domain CEW88_20150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_20150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_20155 PF05853 beta-keto acid cleavage enzyme CEW88_20160 PF00378 Enoyl-CoA hydratase/isomerase CEW88_20170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_20170 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_20170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_20185 PF00596 Class II Aldolase and Adducin N-terminal domain CEW88_20190 PF13407 Periplasmic binding protein domain CEW88_20195 PF02653 Branched-chain amino acid transport system / permease component CEW88_20200 PF02653 Branched-chain amino acid transport system / permease component CEW88_20205 PF00005 ABC transporter CEW88_20210 PF04198 Putative sugar-binding domain CEW88_20215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CEW88_20215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CEW88_20225 PF00005 ABC transporter CEW88_20230 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20235 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_20240 PF03466 LysR substrate binding domain CEW88_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_20245 PF07690 Major Facilitator Superfamily CEW88_20250 PF07729 FCD domain CEW88_20250 PF00392 Bacterial regulatory proteins, gntR family CEW88_20265 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_20280 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_20280 PF00107 Zinc-binding dehydrogenase CEW88_20285 PF01546 Peptidase family M20/M25/M40 CEW88_20285 PF07687 Peptidase dimerisation domain CEW88_20300 PF01638 HxlR-like helix-turn-helix CEW88_20305 PF01979 Amidohydrolase family CEW88_20310 PF00392 Bacterial regulatory proteins, gntR family CEW88_20310 PF07702 UTRA domain CEW88_20325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CEW88_20340 PF01638 HxlR-like helix-turn-helix CEW88_20345 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CEW88_20350 PF01209 ubiE/COQ5 methyltransferase family CEW88_20360 PF00005 ABC transporter CEW88_20370 PF00296 Luciferase-like monooxygenase CEW88_20375 PF00860 Permease family CEW88_20380 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CEW88_20390 PF00440 Bacterial regulatory proteins, tetR family CEW88_20390 PF08362 YcdC-like protein, C-terminal region CEW88_20395 PF02525 Flavodoxin-like fold CEW88_20400 PF09084 NMT1/THI5 like CEW88_20415 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20420 PF00005 ABC transporter CEW88_20425 PF02633 Creatinine amidohydrolase CEW88_20435 PF00593 TonB dependent receptor CEW88_20435 PF07715 TonB-dependent Receptor Plug Domain CEW88_20440 PF00005 ABC transporter CEW88_20440 PF00664 ABC transporter transmembrane region CEW88_20455 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CEW88_20455 PF02154 Flagellar motor switch protein FliM CEW88_20465 PF08345 Flagellar M-ring protein C-terminal CEW88_20465 PF01514 Secretory protein of YscJ/FliF family CEW88_20475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CEW88_20480 PF00813 FliP family CEW88_20485 PF14841 FliG middle domain CEW88_20485 PF01706 FliG C-terminal domain CEW88_20485 PF14842 FliG N-terminal domain CEW88_20495 PF07378 Flagellar protein FlbT CEW88_20505 PF00669 Bacterial flagellin N-terminal helical region CEW88_20505 PF00700 Bacterial flagellin C-terminal helical region CEW88_20520 PF02119 Flagellar P-ring protein CEW88_20525 PF00072 Response regulator receiver domain CEW88_20525 PF00486 Transcriptional regulatory protein, C terminal CEW88_20540 PF07559 Flagellar basal body protein FlaE CEW88_20540 PF00460 Flagella basal body rod protein CEW88_20540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_20550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_20550 PF00460 Flagella basal body rod protein CEW88_20555 PF00460 Flagella basal body rod protein CEW88_20555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_20565 PF02107 Flagellar L-ring protein CEW88_20585 PF04545 Sigma-70, region 4 CEW88_20585 PF04539 Sigma-70 region 3 CEW88_20585 PF04542 Sigma-70 region 2 CEW88_20585 PF00140 Sigma-70 factor, region 1.2 CEW88_20595 PF00691 OmpA family CEW88_20595 PF13677 Membrane MotB of proton-channel complex MotA/MotB CEW88_20605 PF05443 ROS/MUCR transcriptional regulator protein CEW88_20610 PF00486 Transcriptional regulatory protein, C terminal CEW88_20610 PF00072 Response regulator receiver domain CEW88_20620 PF01618 MotA/TolQ/ExbB proton channel family CEW88_20645 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CEW88_20645 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CEW88_20645 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal CEW88_20650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_20650 PF00005 ABC transporter CEW88_20660 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_20670 PF03466 LysR substrate binding domain CEW88_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_20675 PF00551 Formyl transferase CEW88_20675 PF02911 Formyl transferase, C-terminal domain CEW88_20675 PF01370 NAD dependent epimerase/dehydratase family CEW88_20685 PF08125 Mannitol dehydrogenase C-terminal domain CEW88_20685 PF01232 Mannitol dehydrogenase Rossmann domain CEW88_20690 PF03786 D-mannonate dehydratase (UxuA) CEW88_20695 PF00392 Bacterial regulatory proteins, gntR family CEW88_20695 PF07729 FCD domain CEW88_20700 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_20710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_20715 PF00107 Zinc-binding dehydrogenase CEW88_20715 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_20725 PF10397 Adenylosuccinate lyase C-terminus CEW88_20725 PF00206 Lyase CEW88_20730 PF00775 Dioxygenase CEW88_20735 PF00775 Dioxygenase CEW88_20735 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CEW88_20745 PF00561 alpha/beta hydrolase fold CEW88_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_20750 PF03466 LysR substrate binding domain CEW88_20755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_20755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_20765 PF00583 Acetyltransferase (GNAT) family CEW88_20770 PF00202 Aminotransferase class-III CEW88_20775 PF06339 Ectoine synthase CEW88_20780 PF13840 ACT domain CEW88_20780 PF00696 Amino acid kinase family CEW88_20785 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CEW88_20790 PF03435 Saccharopine dehydrogenase NADP binding domain CEW88_20790 PF16653 Saccharopine dehydrogenase C-terminal domain CEW88_20795 PF00483 Nucleotidyl transferase CEW88_20795 PF01050 Mannose-6-phosphate isomerase CEW88_20800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CEW88_20800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CEW88_20800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CEW88_20800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CEW88_20805 PF02397 Bacterial sugar transferase CEW88_20810 PF00149 Calcineurin-like phosphoesterase CEW88_20815 PF01841 Transglutaminase-like superfamily CEW88_20820 PF00999 Sodium/hydrogen exchanger family CEW88_20830 PF00376 MerR family regulatory protein CEW88_20830 PF13614 AAA domain CEW88_20845 PF02397 Bacterial sugar transferase CEW88_20850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CEW88_20850 PF02874 ATP synthase alpha/beta family, beta-barrel domain CEW88_20850 PF18269 T3SS EscN ATPase C-terminal domain CEW88_20855 PF00460 Flagella basal body rod protein CEW88_20860 PF00460 Flagella basal body rod protein CEW88_20860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CEW88_20865 PF02049 Flagellar hook-basal body complex protein FliE CEW88_20870 PF01313 Bacterial export proteins, family 3 CEW88_20880 PF00771 FHIPEP family CEW88_20885 PF01311 Bacterial export proteins, family 1 CEW88_20890 PF01312 FlhB HrpN YscU SpaS Family CEW88_20895 PF03971 Monomeric isocitrate dehydrogenase CEW88_20910 PF00356 Bacterial regulatory proteins, lacI family CEW88_20920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CEW88_20920 PF00753 Metallo-beta-lactamase superfamily CEW88_20920 PF10996 Beta-Casp domain CEW88_20925 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20935 PF00005 ABC transporter CEW88_20935 PF17912 MalK OB fold domain CEW88_20940 PF00576 HIUase/Transthyretin family CEW88_20945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CEW88_20945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CEW88_20955 PF01494 FAD binding domain CEW88_20960 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_20965 PF00005 ABC transporter CEW88_20970 PF12849 PBP superfamily domain CEW88_20985 PF00158 Sigma-54 interaction domain CEW88_20985 PF00072 Response regulator receiver domain CEW88_20985 PF02954 Bacterial regulatory protein, Fis family CEW88_20990 PF00034 Cytochrome c CEW88_20995 PF01292 Prokaryotic cytochrome b561 CEW88_21000 PF13247 4Fe-4S dicluster domain CEW88_21005 PF01568 Molydopterin dinucleotide binding domain CEW88_21005 PF00384 Molybdopterin oxidoreductase CEW88_21005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CEW88_21040 PF10609 NUBPL iron-transfer P-loop NTPase CEW88_21055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_21055 PF00512 His Kinase A (phospho-acceptor) domain CEW88_21055 PF00989 PAS fold CEW88_21060 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CEW88_21060 PF01568 Molydopterin dinucleotide binding domain CEW88_21060 PF00384 Molybdopterin oxidoreductase CEW88_21060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CEW88_21060 PF12838 4Fe-4S dicluster domain CEW88_21065 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CEW88_21065 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CEW88_21065 PF10531 SLBB domain CEW88_21070 PF01206 Sulfurtransferase TusA CEW88_21075 PF00994 Probable molybdopterin binding domain CEW88_21075 PF03453 MoeA N-terminal region (domain I and II) CEW88_21075 PF03454 MoeA C-terminal region (domain IV) CEW88_21080 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CEW88_21085 PF12804 MobA-like NTP transferase domain CEW88_21090 PF02634 FdhD/NarQ family CEW88_21110 PF00171 Aldehyde dehydrogenase family CEW88_21115 PF02028 BCCT, betaine/carnitine/choline family transporter CEW88_21120 PF05853 beta-keto acid cleavage enzyme CEW88_21125 PF13091 PLD-like domain CEW88_21135 PF01011 PQQ enzyme repeat CEW88_21145 PF00672 HAMP domain CEW88_21145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_21145 PF00512 His Kinase A (phospho-acceptor) domain CEW88_21150 PF00486 Transcriptional regulatory protein, C terminal CEW88_21150 PF00072 Response regulator receiver domain CEW88_21155 PF01547 Bacterial extracellular solute-binding protein CEW88_21165 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21170 PF00005 ABC transporter CEW88_21170 PF17912 MalK OB fold domain CEW88_21185 PF00171 Aldehyde dehydrogenase family CEW88_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_21190 PF03466 LysR substrate binding domain CEW88_21195 PF03023 Lipid II flippase MurJ CEW88_21200 PF00005 ABC transporter CEW88_21200 PF12857 TOBE-like domain CEW88_21205 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21210 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21220 PF02082 Transcriptional regulator CEW88_21225 PF13404 AsnC-type helix-turn-helix domain CEW88_21225 PF01037 Lrp/AsnC ligand binding domain CEW88_21245 PF00873 AcrB/AcrD/AcrF family CEW88_21255 PF17932 Tetracyclin repressor-like, C-terminal domain CEW88_21255 PF00440 Bacterial regulatory proteins, tetR family CEW88_21260 PF02634 FdhD/NarQ family CEW88_21265 PF00384 Molybdopterin oxidoreductase CEW88_21270 PF01654 Cytochrome bd terminal oxidase subunit I CEW88_21275 PF02322 Cytochrome bd terminal oxidase subunit II CEW88_21280 PF03358 NADPH-dependent FMN reductase CEW88_21290 PF00115 Cytochrome C and Quinol oxidase polypeptide I CEW88_21305 PF00034 Cytochrome c CEW88_21320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_21325 PF01799 [2Fe-2S] binding domain CEW88_21325 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_21330 PF01053 Cys/Met metabolism PLP-dependent enzyme CEW88_21340 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_21350 PF03401 Tripartite tricarboxylate transporter family receptor CEW88_21355 PF03737 Aldolase/RraA CEW88_21360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CEW88_21360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CEW88_21360 PF01842 ACT domain CEW88_21365 PF03466 LysR substrate binding domain CEW88_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_21370 PF08125 Mannitol dehydrogenase C-terminal domain CEW88_21370 PF01232 Mannitol dehydrogenase Rossmann domain CEW88_21375 PF00248 Aldo/keto reductase family CEW88_21390 PF14759 Reductase C-terminal CEW88_21390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CEW88_21395 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_21400 PF00067 Cytochrome P450 CEW88_21405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_21405 PF03466 LysR substrate binding domain CEW88_21415 PF00356 Bacterial regulatory proteins, lacI family CEW88_21420 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_21435 PF00920 Dehydratase family CEW88_21440 PF00701 Dihydrodipicolinate synthetase family CEW88_21445 PF03737 Aldolase/RraA CEW88_21450 PF01037 Lrp/AsnC ligand binding domain CEW88_21455 PF17831 Pyruvate dehydrogenase E1 component middle domain CEW88_21455 PF00456 Transketolase, thiamine diphosphate binding domain CEW88_21460 PF02654 Cobalamin-5-phosphate synthase CEW88_21465 PF02277 Phosphoribosyltransferase CEW88_21470 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CEW88_21485 PF03186 CobD/Cbib protein CEW88_21490 PF00155 Aminotransferase class I and II CEW88_21495 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CEW88_21505 PF07683 Cobalamin synthesis protein cobW C-terminal domain CEW88_21505 PF02492 CobW/HypB/UreG, nucleotide-binding domain CEW88_21510 PF02514 CobN/Magnesium Chelatase CEW88_21515 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CEW88_21520 PF02570 Precorrin-8X methylmutase CEW88_21525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_21530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_21535 PF02571 Precorrin-6x reductase CbiJ/CobK CEW88_21540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_21550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_21555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_21555 PF07685 CobB/CobQ-like glutamine amidotransferase domain CEW88_21565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CEW88_21585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_21595 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_21610 PF00501 AMP-binding enzyme CEW88_21610 PF13193 AMP-binding enzyme C-terminal domain CEW88_21620 PF00171 Aldehyde dehydrogenase family CEW88_21630 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21635 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21640 PF00005 ABC transporter CEW88_21645 PF02615 Malate/L-lactate dehydrogenase CEW88_21660 PF00701 Dihydrodipicolinate synthetase family CEW88_21665 PF05544 Proline racemase CEW88_21670 PF01266 FAD dependent oxidoreductase CEW88_21675 PF05544 Proline racemase CEW88_21715 PF13360 PQQ-like domain CEW88_21715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CEW88_21740 PF00005 ABC transporter CEW88_21790 PF13360 PQQ-like domain CEW88_21795 PF00034 Cytochrome c CEW88_21800 PF00756 Putative esterase CEW88_21805 PF00107 Zinc-binding dehydrogenase CEW88_21805 PF08240 Alcohol dehydrogenase GroES-like domain CEW88_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_21845 PF00512 His Kinase A (phospho-acceptor) domain CEW88_21855 PF00072 Response regulator receiver domain CEW88_21855 PF00196 Bacterial regulatory proteins, luxR family CEW88_21860 PF04828 Glutathione-dependent formaldehyde-activating enzyme CEW88_21870 PF03428 Replication protein C N-terminal domain CEW88_21870 PF11800 Replication protein C C-terminal region CEW88_21875 PF02195 ParB-like nuclease domain CEW88_21875 PF07506 RepB plasmid partitioning protein CEW88_21880 PF13614 AAA domain CEW88_21885 PF04055 Radical SAM superfamily CEW88_21885 PF13186 Iron-sulfur cluster-binding domain CEW88_21890 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CEW88_21895 PF03070 TENA/THI-4/PQQC family CEW88_21900 PF12706 Beta-lactamase superfamily domain CEW88_21905 PF08042 PqqA family CEW88_21910 PF00486 Transcriptional regulatory protein, C terminal CEW88_21910 PF00072 Response regulator receiver domain CEW88_21915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_21915 PF00072 Response regulator receiver domain CEW88_21915 PF13426 PAS domain CEW88_21915 PF00512 His Kinase A (phospho-acceptor) domain CEW88_21915 PF08448 PAS fold CEW88_21930 PF00005 ABC transporter CEW88_21940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_21940 PF03466 LysR substrate binding domain CEW88_21950 PF00873 AcrB/AcrD/AcrF family CEW88_21955 PF13533 Biotin-lipoyl like CEW88_21980 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_21985 PF00005 ABC transporter CEW88_21990 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_21995 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22000 PF01546 Peptidase family M20/M25/M40 CEW88_22020 PF03401 Tripartite tricarboxylate transporter family receptor CEW88_22030 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_22035 PF07687 Peptidase dimerisation domain CEW88_22035 PF01546 Peptidase family M20/M25/M40 CEW88_22040 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CEW88_22045 PF02797 Chalcone and stilbene synthases, C-terminal domain CEW88_22045 PF00195 Chalcone and stilbene synthases, N-terminal domain CEW88_22050 PF13454 FAD-NAD(P)-binding CEW88_22055 PF00356 Bacterial regulatory proteins, lacI family CEW88_22065 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22070 PF00005 ABC transporter CEW88_22090 PF04209 homogentisate 1,2-dioxygenase CEW88_22105 PF01494 FAD binding domain CEW88_22115 PF14497 Glutathione S-transferase, C-terminal domain CEW88_22115 PF02798 Glutathione S-transferase, N-terminal domain CEW88_22125 PF00403 Heavy-metal-associated domain CEW88_22145 PF01613 Flavin reductase like domain CEW88_22155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CEW88_22170 PF01042 Endoribonuclease L-PSP CEW88_22190 PF01557 Fumarylacetoacetate (FAA) hydrolase family CEW88_22200 PF04199 Putative cyclase CEW88_22210 PF01047 MarR family CEW88_22230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_22235 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22240 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_22240 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_22245 PF00005 ABC transporter CEW88_22250 PF00005 ABC transporter CEW88_22250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_22255 PF13193 AMP-binding enzyme C-terminal domain CEW88_22255 PF00501 AMP-binding enzyme CEW88_22265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_22270 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_22285 PF00384 Molybdopterin oxidoreductase CEW88_22285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CEW88_22285 PF01568 Molydopterin dinucleotide binding domain CEW88_22290 PF12800 4Fe-4S binding domain CEW88_22290 PF12838 4Fe-4S dicluster domain CEW88_22295 PF12801 4Fe-4S binding domain CEW88_22295 PF13237 4Fe-4S dicluster domain CEW88_22300 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CEW88_22305 PF03264 NapC/NirT cytochrome c family, N-terminal region CEW88_22330 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_22330 PF14602 Hexapeptide repeat of succinyl-transferase CEW88_22330 PF12464 Maltose acetyltransferase CEW88_22340 PF02397 Bacterial sugar transferase CEW88_22380 PF13614 AAA domain CEW88_22415 PF03706 Lysylphosphatidylglycerol synthase TM region CEW88_22415 PF09924 Uncharacterised conserved protein (DUF2156) CEW88_22425 PF01569 PAP2 superfamily CEW88_22435 PF07690 Major Facilitator Superfamily CEW88_22440 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22445 PF00005 ABC transporter CEW88_22450 PF03070 TENA/THI-4/PQQC family CEW88_22455 PF09084 NMT1/THI5 like CEW88_22460 PF00899 ThiF family CEW88_22465 PF02581 Thiamine monophosphate synthase CEW88_22470 PF05690 Thiazole biosynthesis protein ThiG CEW88_22480 PF01266 FAD dependent oxidoreductase CEW88_22485 PF08543 Phosphomethylpyrimidine kinase CEW88_22490 PF01037 Lrp/AsnC ligand binding domain CEW88_22495 PF03301 Tryptophan 2,3-dioxygenase CEW88_22500 PF00005 ABC transporter CEW88_22505 PF00392 Bacterial regulatory proteins, gntR family CEW88_22505 PF07729 FCD domain CEW88_22510 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_22515 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22520 PF00266 Aminotransferase class-V CEW88_22525 PF01266 FAD dependent oxidoreductase CEW88_22530 PF00005 ABC transporter CEW88_22535 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22540 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_22550 PF08671 Anti-repressor SinI CEW88_22550 PF01381 Helix-turn-helix CEW88_22560 PF13936 Helix-turn-helix domain CEW88_22560 PF00665 Integrase core domain CEW88_22570 PF01613 Flavin reductase like domain CEW88_22575 PF07729 FCD domain CEW88_22575 PF00392 Bacterial regulatory proteins, gntR family CEW88_22580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_22590 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22590 PF12911 N-terminal TM domain of oligopeptide transport permease C CEW88_22595 PF07969 Amidohydrolase family CEW88_22600 PF01979 Amidohydrolase family CEW88_22605 PF00005 ABC transporter CEW88_22605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_22610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_22610 PF00005 ABC transporter CEW88_22615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CEW88_22630 PF07519 Tannase and feruloyl esterase CEW88_22640 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CEW88_22640 PF08501 Shikimate dehydrogenase substrate binding domain CEW88_22640 PF03435 Saccharopine dehydrogenase NADP binding domain CEW88_22645 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_22660 PF03466 LysR substrate binding domain CEW88_22660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_22675 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CEW88_22675 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CEW88_22680 PF00890 FAD binding domain CEW88_22680 PF02910 Fumarate reductase flavoprotein C-term CEW88_22685 PF02445 Quinolinate synthetase A protein CEW88_22700 PF03328 HpcH/HpaI aldolase/citrate lyase family CEW88_22715 PF00356 Bacterial regulatory proteins, lacI family CEW88_22720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_22720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_22720 PF00378 Enoyl-CoA hydratase/isomerase CEW88_22725 PF00005 ABC transporter CEW88_22730 PF00005 ABC transporter CEW88_22730 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_22735 PF11862 Domain of unknown function (DUF3382) CEW88_22735 PF02653 Branched-chain amino acid transport system / permease component CEW88_22740 PF02653 Branched-chain amino acid transport system / permease component CEW88_22755 PF00378 Enoyl-CoA hydratase/isomerase CEW88_22760 PF03061 Thioesterase superfamily CEW88_22770 PF08362 YcdC-like protein, C-terminal region CEW88_22770 PF00440 Bacterial regulatory proteins, tetR family CEW88_22775 PF00132 Bacterial transferase hexapeptide (six repeats) CEW88_22780 PF00171 Aldehyde dehydrogenase family CEW88_22780 PF01575 MaoC like domain CEW88_22790 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_22790 PF00175 Oxidoreductase NAD-binding domain CEW88_22790 PF00970 Oxidoreductase FAD-binding domain CEW88_22795 PF01883 Iron-sulfur cluster assembly protein CEW88_22800 PF05138 Phenylacetic acid catabolic protein CEW88_22805 PF06243 Phenylacetic acid degradation B CEW88_22810 PF05138 Phenylacetic acid catabolic protein CEW88_22815 PF00108 Thiolase, N-terminal domain CEW88_22815 PF02803 Thiolase, C-terminal domain CEW88_22820 PF08223 PaaX-like protein C-terminal domain CEW88_22820 PF07848 PaaX-like protein CEW88_22830 PF13404 AsnC-type helix-turn-helix domain CEW88_22830 PF01037 Lrp/AsnC ligand binding domain CEW88_22840 PF08212 Lipocalin-like domain CEW88_22845 PF02254 TrkA-N domain CEW88_22845 PF02080 TrkA-C domain CEW88_22850 PF02386 Cation transport protein CEW88_22855 PF17912 MalK OB fold domain CEW88_22855 PF03459 TOBE domain CEW88_22855 PF00005 ABC transporter CEW88_22860 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22865 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22870 PF13416 Bacterial extracellular solute-binding protein CEW88_22875 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CEW88_22885 PF00356 Bacterial regulatory proteins, lacI family CEW88_22890 PF02653 Branched-chain amino acid transport system / permease component CEW88_22895 PF00005 ABC transporter CEW88_22930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_22930 PF03466 LysR substrate binding domain CEW88_22935 PF02733 Dak1 domain CEW88_22935 PF02734 DAK2 domain CEW88_22940 PF08402 TOBE domain CEW88_22940 PF00005 ABC transporter CEW88_22945 PF17912 MalK OB fold domain CEW88_22945 PF00005 ABC transporter CEW88_22955 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_22970 PF00356 Bacterial regulatory proteins, lacI family CEW88_22975 PF02798 Glutathione S-transferase, N-terminal domain CEW88_22975 PF00043 Glutathione S-transferase, C-terminal domain CEW88_22980 PF02515 CoA-transferase family III CEW88_22985 PF00682 HMGL-like CEW88_22990 PF07729 FCD domain CEW88_22990 PF00392 Bacterial regulatory proteins, gntR family CEW88_23005 PF01970 Tripartite tricarboxylate transporter TctA family CEW88_23015 PF00248 Aldo/keto reductase family CEW88_23025 PF00392 Bacterial regulatory proteins, gntR family CEW88_23025 PF07729 FCD domain CEW88_23030 PF12399 Branched-chain amino acid ATP-binding cassette transporter CEW88_23030 PF00005 ABC transporter CEW88_23035 PF00005 ABC transporter CEW88_23040 PF02653 Branched-chain amino acid transport system / permease component CEW88_23045 PF02653 Branched-chain amino acid transport system / permease component CEW88_23045 PF11862 Domain of unknown function (DUF3382) CEW88_23065 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CEW88_23070 PF13193 AMP-binding enzyme C-terminal domain CEW88_23070 PF00501 AMP-binding enzyme CEW88_23075 PF13411 MerR HTH family regulatory protein CEW88_23080 PF00108 Thiolase, N-terminal domain CEW88_23080 PF02803 Thiolase, C-terminal domain CEW88_23085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CEW88_23085 PF00378 Enoyl-CoA hydratase/isomerase CEW88_23085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CEW88_23090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CEW88_23090 PF12806 Acetyl-CoA dehydrogenase C-terminal like CEW88_23090 PF02770 Acyl-CoA dehydrogenase, middle domain CEW88_23090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CEW88_23105 PF01979 Amidohydrolase family CEW88_23105 PF00449 Urease alpha-subunit, N-terminal domain CEW88_23110 PF00266 Aminotransferase class-V CEW88_23115 PF00005 ABC transporter CEW88_23125 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_23130 PF07729 FCD domain CEW88_23130 PF00392 Bacterial regulatory proteins, gntR family CEW88_23145 PF01022 Bacterial regulatory protein, arsR family CEW88_23150 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CEW88_23150 PF01266 FAD dependent oxidoreductase CEW88_23155 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_23160 PF00005 ABC transporter CEW88_23170 PF00392 Bacterial regulatory proteins, gntR family CEW88_23170 PF07729 FCD domain CEW88_23175 PF08501 Shikimate dehydrogenase substrate binding domain CEW88_23175 PF01488 Shikimate / quinate 5-dehydrogenase CEW88_23175 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CEW88_23180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_23200 PF00378 Enoyl-CoA hydratase/isomerase CEW88_23205 PF13193 AMP-binding enzyme C-terminal domain CEW88_23205 PF00501 AMP-binding enzyme CEW88_23230 PF01740 STAS domain CEW88_23235 PF01740 STAS domain CEW88_23235 PF08678 Rsbr N terminal CEW88_23240 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CEW88_23240 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CEW88_23245 PF00941 FAD binding domain in molybdopterin dehydrogenase CEW88_23245 PF03450 CO dehydrogenase flavoprotein C-terminal domain CEW88_23250 PF10518 TAT (twin-arginine translocation) pathway signal sequence CEW88_23250 PF01799 [2Fe-2S] binding domain CEW88_23250 PF00111 2Fe-2S iron-sulfur cluster binding domain CEW88_23255 PF00128 Alpha amylase, catalytic domain CEW88_23255 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CEW88_23260 PF00483 Nucleotidyl transferase CEW88_23265 PF03428 Replication protein C N-terminal domain CEW88_23265 PF11800 Replication protein C C-terminal region CEW88_23285 PF17862 AAA+ lid domain CEW88_23285 PF01434 Peptidase family M41 CEW88_23285 PF00004 ATPase family associated with various cellular activities (AAA) CEW88_23305 PF03167 Uracil DNA glycosylase superfamily CEW88_23335 PF01557 Fumarylacetoacetate (FAA) hydrolase family CEW88_23345 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_23350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CEW88_23365 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_23370 PF00939 Sodium:sulfate symporter transmembrane region CEW88_23375 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CEW88_23375 PF13378 Enolase C-terminal domain-like CEW88_23385 PF00561 alpha/beta hydrolase fold CEW88_23390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_23390 PF03466 LysR substrate binding domain CEW88_23410 PF02706 Chain length determinant protein CEW88_23410 PF13807 G-rich domain on putative tyrosine kinase CEW88_23410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CEW88_23430 PF00483 Nucleotidyl transferase CEW88_23435 PF16363 GDP-mannose 4,6 dehydratase CEW88_23440 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CEW88_23450 PF01501 Glycosyl transferase family 8 CEW88_23450 PF00535 Glycosyl transferase family 2 CEW88_23470 PF00248 Aldo/keto reductase family CEW88_23480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CEW88_23480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CEW88_23490 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CEW88_23490 PF02563 Polysaccharide biosynthesis/export protein CEW88_23490 PF10531 SLBB domain CEW88_23505 PF06082 Exopolysaccharide biosynthesis protein YbjH CEW88_23515 PF01507 Phosphoadenosine phosphosulfate reductase family CEW88_23520 PF00009 Elongation factor Tu GTP binding domain CEW88_23545 PF10134 Replication initiator protein A CEW88_23550 PF13614 AAA domain CEW88_23550 PF00376 MerR family regulatory protein CEW88_23580 PF00005 ABC transporter CEW88_23615 PF16363 GDP-mannose 4,6 dehydratase CEW88_23625 PF13439 Glycosyltransferase Family 4 CEW88_23625 PF00534 Glycosyl transferases group 1 CEW88_23640 PF05159 Capsule polysaccharide biosynthesis protein CEW88_23650 PF00535 Glycosyl transferase family 2 CEW88_23655 PF00535 Glycosyl transferase family 2 CEW88_23665 PF00483 Nucleotidyl transferase CEW88_23675 PF16363 GDP-mannose 4,6 dehydratase CEW88_23680 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CEW88_23685 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CEW88_23685 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CEW88_23685 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CEW88_23695 PF01380 SIS domain CEW88_23695 PF00571 CBS domain CEW88_23700 PF02348 Cytidylyltransferase CEW88_23705 PF00793 DAHP synthetase I family CEW88_23780 PF02397 Bacterial sugar transferase CEW88_23785 PF01943 Polysaccharide biosynthesis protein CEW88_23790 PF04230 Polysaccharide pyruvyl transferase CEW88_23820 PF03033 Glycosyltransferase family 28 N-terminal domain CEW88_23820 PF04101 Glycosyltransferase family 28 C-terminal domain CEW88_23835 PF00535 Glycosyl transferase family 2 CEW88_23840 PF00535 Glycosyl transferase family 2 CEW88_23845 PF01042 Endoribonuclease L-PSP CEW88_23850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CEW88_23855 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_23865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_23865 PF00005 ABC transporter CEW88_23870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CEW88_23870 PF00005 ABC transporter CEW88_23875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CEW88_23875 PF03466 LysR substrate binding domain CEW88_23880 PF01177 Asp/Glu/Hydantoin racemase CEW88_23885 PF01979 Amidohydrolase family CEW88_23885 PF00449 Urease alpha-subunit, N-terminal domain CEW88_23890 PF00795 Carbon-nitrogen hydrolase CEW88_23895 PF00528 Binding-protein-dependent transport system inner membrane component CEW88_23905 PF00005 ABC transporter CEW88_23910 PF00497 Bacterial extracellular solute-binding proteins, family 3 CEW88_23920 PF13361 UvrD-like helicase C-terminal domain CEW88_23920 PF00580 UvrD/REP helicase N-terminal domain CEW88_23925 PF00501 AMP-binding enzyme CEW88_23925 PF13193 AMP-binding enzyme C-terminal domain CEW88_23930 PF00108 Thiolase, N-terminal domain CEW88_23930 PF02803 Thiolase, C-terminal domain CEW88_23935 PF00881 Nitroreductase family CEW88_23940 PF02632 BioY family CEW88_23945 PF02361 Cobalt transport protein CEW88_23950 PF00005 ABC transporter CEW88_23965 PF00067 Cytochrome P450 CEW88_23965 PF00175 Oxidoreductase NAD-binding domain CEW88_23965 PF00258 Flavodoxin CEW88_23965 PF00667 FAD binding domain CEW88_24005 PF02371 Transposase IS116/IS110/IS902 family CEW88_24005 PF01548 Transposase CEW88_24015 PF00440 Bacterial regulatory proteins, tetR family CEW88_24020 PF03480 Bacterial extracellular solute-binding protein, family 7 CEW88_24030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_24040 PF01979 Amidohydrolase family CEW88_24055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CEW88_24075 PF02632 BioY family CEW88_24080 PF06968 Biotin and Thiamin Synthesis associated domain CEW88_24080 PF04055 Radical SAM superfamily CEW88_24085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CEW88_24085 PF00529 HlyD membrane-fusion protein of T1SS CEW88_24105 PF00313 'Cold-shock' DNA-binding domain CEW88_24155 PF00196 Bacterial regulatory proteins, luxR family CEW88_24155 PF00072 Response regulator receiver domain CEW88_24160 PF00512 His Kinase A (phospho-acceptor) domain CEW88_24160 PF00989 PAS fold CEW88_24160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_24165 PF00072 Response regulator receiver domain CEW88_24165 PF13426 PAS domain CEW88_24165 PF08448 PAS fold CEW88_24165 PF00512 His Kinase A (phospho-acceptor) domain CEW88_24165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CEW88_24175 PF00202 Aminotransferase class-III CEW88_24195 PF13737 Transposase DDE domain CEW88_24205 PF00701 Dihydrodipicolinate synthetase family CEW88_24215 PF00392 Bacterial regulatory proteins, gntR family CEW88_24215 PF07729 FCD domain CEW88_24225 PF04972 BON domain CEW88_24225 PF01476 LysM domain CEW88_24245 PF07859 alpha/beta hydrolase fold CEW88_24250 PF00854 POT family CEW88_24260 PF13614 AAA domain CEW88_24280 PF07690 Major Facilitator Superfamily CEW88_24295 PF14602 Hexapeptide repeat of succinyl-transferase CEW88_24295 PF12464 Maltose acetyltransferase