locus-tag class description AYJ57_00010 PF00691 OmpA family AYJ57_00025 PF00472 RF-1 domain AYJ57_00025 PF03462 PCRF domain AYJ57_00045 PF10369 Small subunit of acetolactate synthase AYJ57_00045 PF01842 ACT domain AYJ57_00055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ57_00055 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ57_00055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ57_00065 PF00196 Bacterial regulatory proteins, luxR family AYJ57_00065 PF00072 Response regulator receiver domain AYJ57_00070 PF17200 Single Cache domain 2 AYJ57_00070 PF07730 Histidine kinase AYJ57_00075 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_00085 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_00090 PF02574 Homocysteine S-methyltransferase AYJ57_00090 PF02607 B12 binding domain AYJ57_00090 PF02310 B12 binding domain AYJ57_00090 PF00809 Pterin binding enzyme AYJ57_00090 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYJ57_00095 PF00970 Oxidoreductase FAD-binding domain AYJ57_00095 PF00175 Oxidoreductase NAD-binding domain AYJ57_00095 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_00100 PF00355 Rieske [2Fe-2S] domain AYJ57_00100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYJ57_00105 PF08543 Phosphomethylpyrimidine kinase AYJ57_00110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ57_00110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ57_00110 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ57_00115 PF01037 Lrp/AsnC ligand binding domain AYJ57_00125 PF03658 RnfH family Ubiquitin AYJ57_00130 PF02508 Rnf-Nqr subunit, membrane protein AYJ57_00135 PF04205 FMN-binding domain AYJ57_00140 PF03116 NQR2, RnfD, RnfE family AYJ57_00145 PF13237 4Fe-4S dicluster domain AYJ57_00145 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYJ57_00145 PF10531 SLBB domain AYJ57_00145 PF13375 RnfC Barrel sandwich hybrid domain AYJ57_00150 PF04060 Putative Fe-S cluster AYJ57_00155 PF02508 Rnf-Nqr subunit, membrane protein AYJ57_00160 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_00175 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_00180 PF08534 Redoxin AYJ57_00185 PF00258 Flavodoxin AYJ57_00190 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AYJ57_00195 PF00148 Nitrogenase component 1 type Oxidoreductase AYJ57_00200 PF11844 Domain of unknown function (DUF3364) AYJ57_00200 PF00148 Nitrogenase component 1 type Oxidoreductase AYJ57_00210 PF00148 Nitrogenase component 1 type Oxidoreductase AYJ57_00215 PF00148 Nitrogenase component 1 type Oxidoreductase AYJ57_00220 PF02579 Dinitrogenase iron-molybdenum cofactor AYJ57_00225 PF03270 Protein of unknown function, DUF269 AYJ57_00230 PF05082 Rop-like AYJ57_00235 PF13237 4Fe-4S dicluster domain AYJ57_00240 PF04891 NifQ AYJ57_00250 PF01521 Iron-sulphur cluster biosynthesis AYJ57_00255 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_00255 PF01592 NifU-like N terminal domain AYJ57_00255 PF01106 NifU-like domain AYJ57_00260 PF00266 Aminotransferase class-V AYJ57_00265 PF00682 HMGL-like AYJ57_00275 PF03206 Nitrogen fixation protein NifW AYJ57_00285 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_00290 PF03459 TOBE domain AYJ57_00290 PF00005 ABC transporter AYJ57_00300 PF00210 Ferritin-like domain AYJ57_00305 PF00309 Sigma-54 factor, Activator interacting domain (AID) AYJ57_00305 PF04963 Sigma-54 factor, core binding domain AYJ57_00305 PF04552 Sigma-54, DNA binding domain AYJ57_00310 PF02954 Bacterial regulatory protein, Fis family AYJ57_00310 PF13185 GAF domain AYJ57_00310 PF00158 Sigma-54 interaction domain AYJ57_00315 PF02579 Dinitrogenase iron-molybdenum cofactor AYJ57_00315 PF04055 Radical SAM superfamily AYJ57_00320 PF12838 4Fe-4S dicluster domain AYJ57_00325 PF05484 LRV protein FeS4 cluster AYJ57_00325 PF01816 Leucine rich repeat variant AYJ57_00330 PF04319 NifZ domain AYJ57_00360 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AYJ57_00365 PF03466 LysR substrate binding domain AYJ57_00365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_00375 PF01207 Dihydrouridine synthase (Dus) AYJ57_00385 PF03652 Holliday junction resolvase AYJ57_00395 PF01266 FAD dependent oxidoreductase AYJ57_00415 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_00415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_00415 PF01571 Aminomethyltransferase folate-binding domain AYJ57_00415 PF17806 Sarcosine oxidase A3 domain AYJ57_00430 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AYJ57_00430 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AYJ57_00435 PF10414 Sirohaem synthase dimerisation region AYJ57_00435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYJ57_00440 PF00106 short chain dehydrogenase AYJ57_00445 PF00296 Luciferase-like monooxygenase AYJ57_00470 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ57_00480 PF09857 Putative toxin of bacterial toxin-antitoxin pair AYJ57_00485 PF00266 Aminotransferase class-V AYJ57_00490 PF00875 DNA photolyase AYJ57_00490 PF03441 FAD binding domain of DNA photolyase AYJ57_00500 PF00293 NUDIX domain AYJ57_00505 PF00571 CBS domain AYJ57_00505 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_00515 PF02272 DHHA1 domain AYJ57_00515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYJ57_00515 PF01411 tRNA synthetases class II (A) AYJ57_00530 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AYJ57_00540 PF01156 Inosine-uridine preferring nucleoside hydrolase AYJ57_00545 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AYJ57_00545 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AYJ57_00550 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AYJ57_00555 PF00342 Phosphoglucose isomerase AYJ57_00580 PF05951 Bacterial protein of unknown function (DUF882) AYJ57_00590 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_00590 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AYJ57_00595 PF00550 Phosphopantetheine attachment site AYJ57_00600 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_00600 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_00605 PF03358 NADPH-dependent FMN reductase AYJ57_00610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ57_00610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ57_00615 PF05661 Protein of unknown function (DUF808) AYJ57_00625 PF00456 Transketolase, thiamine diphosphate binding domain AYJ57_00625 PF02779 Transketolase, pyrimidine binding domain AYJ57_00625 PF02780 Transketolase, C-terminal domain AYJ57_00640 PF03952 Enolase, N-terminal domain AYJ57_00640 PF00113 Enolase, C-terminal TIM barrel domain AYJ57_00655 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ57_00655 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ57_00655 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ57_00655 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ57_00660 PF02446 4-alpha-glucanotransferase AYJ57_00665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ57_00665 PF00128 Alpha amylase, catalytic domain AYJ57_00670 PF00534 Glycosyl transferases group 1 AYJ57_00670 PF08323 Starch synthase catalytic domain AYJ57_00675 PF00483 Nucleotidyl transferase AYJ57_00680 PF02806 Alpha amylase, C-terminal all-beta domain AYJ57_00680 PF00128 Alpha amylase, catalytic domain AYJ57_00680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ57_00685 PF00343 Carbohydrate phosphorylase AYJ57_00690 PF02685 Glucokinase AYJ57_00695 PF00232 Glycosyl hydrolase family 1 AYJ57_00700 PF00356 Bacterial regulatory proteins, lacI family AYJ57_00705 PF01547 Bacterial extracellular solute-binding protein AYJ57_00710 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_00715 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_00720 PF00128 Alpha amylase, catalytic domain AYJ57_00725 PF03459 TOBE domain AYJ57_00725 PF17912 MalK OB fold domain AYJ57_00725 PF00005 ABC transporter AYJ57_00730 PF00005 ABC transporter AYJ57_00730 PF17760 UvrA interaction domain AYJ57_00730 PF17755 UvrA DNA-binding domain AYJ57_00740 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_00750 PF02615 Malate/L-lactate dehydrogenase AYJ57_00760 PF01799 [2Fe-2S] binding domain AYJ57_00760 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_00765 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_00765 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYJ57_00770 PF00941 FAD binding domain in molybdopterin dehydrogenase AYJ57_00770 PF03450 CO dehydrogenase flavoprotein C-terminal domain AYJ57_00775 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYJ57_00775 PF07685 CobB/CobQ-like glutamine amidotransferase domain AYJ57_00785 PF00180 Isocitrate/isopropylmalate dehydrogenase AYJ57_00800 PF07690 Major Facilitator Superfamily AYJ57_00810 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_00810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_00815 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_00820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_00820 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_00820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_00825 PF00534 Glycosyl transferases group 1 AYJ57_00825 PF13439 Glycosyltransferase Family 4 AYJ57_00830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_00840 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_00845 PF02769 AIR synthase related protein, C-terminal domain AYJ57_00845 PF00586 AIR synthase related protein, N-terminal domain AYJ57_00850 PF00551 Formyl transferase AYJ57_00860 PF01612 3'-5' exonuclease AYJ57_00860 PF00570 HRDC domain AYJ57_00875 PF02657 Fe-S metabolism associated domain AYJ57_00880 PF01765 Ribosome recycling factor AYJ57_00885 PF01255 Putative undecaprenyl diphosphate synthase AYJ57_00895 PF13288 DXP reductoisomerase C-terminal domain AYJ57_00895 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AYJ57_00895 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AYJ57_00900 PF02163 Peptidase family M50 AYJ57_00900 PF17820 PDZ domain AYJ57_00915 PF07977 FabA-like domain AYJ57_00920 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_00920 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AYJ57_00925 PF17930 LpxI N-terminal domain AYJ57_00925 PF06230 LpxI C-terminal domain AYJ57_00930 PF02684 Lipid-A-disaccharide synthetase AYJ57_00940 PF05872 Bacterial protein of unknown function (DUF853) AYJ57_00955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_00970 PF03167 Uracil DNA glycosylase superfamily AYJ57_00980 PF04227 Indigoidine synthase A like protein AYJ57_00985 PF00294 pfkB family carbohydrate kinase AYJ57_00990 PF16884 N-terminal domain of oxidoreductase AYJ57_00990 PF00107 Zinc-binding dehydrogenase AYJ57_01005 PF01220 Dehydroquinase class II AYJ57_01010 PF03472 Autoinducer binding domain AYJ57_01010 PF00196 Bacterial regulatory proteins, luxR family AYJ57_01015 PF00889 Elongation factor TS AYJ57_01020 PF00318 Ribosomal protein S2 AYJ57_01035 PF13533 Biotin-lipoyl like AYJ57_01040 PF00072 Response regulator receiver domain AYJ57_01040 PF00486 Transcriptional regulatory protein, C terminal AYJ57_01045 PF01895 PhoU domain AYJ57_01050 PF00005 ABC transporter AYJ57_01055 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_01060 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_01070 PF16736 Single Cache-like AYJ57_01070 PF00989 PAS fold AYJ57_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_01070 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_01075 PF01053 Cys/Met metabolism PLP-dependent enzyme AYJ57_01085 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_01090 PF00625 Guanylate kinase AYJ57_01095 PF08340 Domain of unknown function (DUF1732) AYJ57_01095 PF03755 YicC-like family, N-terminal region AYJ57_01105 PF00483 Nucleotidyl transferase AYJ57_01110 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYJ57_01110 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYJ57_01115 PF00982 Glycosyltransferase family 20 AYJ57_01115 PF05116 Sucrose-6F-phosphate phosphohydrolase AYJ57_01120 PF00982 Glycosyltransferase family 20 AYJ57_01135 PF01474 Class-II DAHP synthetase family AYJ57_01140 PF01965 DJ-1/PfpI family AYJ57_01140 PF12833 Helix-turn-helix domain AYJ57_01145 PF07995 Glucose / Sorbosone dehydrogenase AYJ57_01150 PF03129 Anticodon binding domain AYJ57_01150 PF04073 Aminoacyl-tRNA editing domain AYJ57_01150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ57_01155 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_01155 PF00005 ABC transporter AYJ57_01160 PF00005 ABC transporter AYJ57_01175 PF02653 Branched-chain amino acid transport system / permease component AYJ57_01195 PF13193 AMP-binding enzyme C-terminal domain AYJ57_01195 PF00501 AMP-binding enzyme AYJ57_01200 PF08471 Class II vitamin B12-dependent ribonucleotide reductase AYJ57_01200 PF02867 Ribonucleotide reductase, barrel domain AYJ57_01215 PF00313 'Cold-shock' DNA-binding domain AYJ57_01220 PF01243 Pyridoxamine 5'-phosphate oxidase AYJ57_01220 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AYJ57_01230 PF00156 Phosphoribosyl transferase domain AYJ57_01235 PF05368 NmrA-like family AYJ57_01240 PF01638 HxlR-like helix-turn-helix AYJ57_01255 PF00425 chorismate binding enzyme AYJ57_01255 PF04715 Anthranilate synthase component I, N terminal region AYJ57_01270 PF00080 Copper/zinc superoxide dismutase (SODC) AYJ57_01275 PF00571 CBS domain AYJ57_01275 PF02163 Peptidase family M50 AYJ57_01280 PF02607 B12 binding domain AYJ57_01280 PF02965 Vitamin B12 dependent methionine synthase, activation domain AYJ57_01280 PF02310 B12 binding domain AYJ57_01280 PF02574 Homocysteine S-methyltransferase AYJ57_01280 PF00809 Pterin binding enzyme AYJ57_01290 PF04055 Radical SAM superfamily AYJ57_01295 PF02310 B12 binding domain AYJ57_01295 PF02607 B12 binding domain AYJ57_01310 PF00117 Glutamine amidotransferase class-I AYJ57_01315 PF02885 Glycosyl transferase family, helical bundle domain AYJ57_01315 PF00591 Glycosyl transferase family, a/b domain AYJ57_01320 PF03167 Uracil DNA glycosylase superfamily AYJ57_01325 PF00218 Indole-3-glycerol phosphate synthase AYJ57_01330 PF01967 MoaC family AYJ57_01335 PF03453 MoeA N-terminal region (domain I and II) AYJ57_01335 PF03454 MoeA C-terminal region (domain IV) AYJ57_01335 PF00994 Probable molybdopterin binding domain AYJ57_01340 PF00717 Peptidase S24-like AYJ57_01340 PF01726 LexA DNA binding domain AYJ57_01345 PF00753 Metallo-beta-lactamase superfamily AYJ57_01345 PF13567 Domain of unknown function (DUF4131) AYJ57_01345 PF03772 Competence protein AYJ57_01350 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ57_01355 PF00285 Citrate synthase, C-terminal domain AYJ57_01360 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_01370 PF03918 Cytochrome C biogenesis protein AYJ57_01375 PF01578 Cytochrome C assembly protein AYJ57_01375 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AYJ57_01385 PF01016 Ribosomal L27 protein AYJ57_01390 PF00829 Ribosomal prokaryotic L21 protein AYJ57_01425 PF09335 SNARE associated Golgi protein AYJ57_01435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ57_01435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ57_01450 PF01467 Cytidylyltransferase-like AYJ57_01455 PF00571 CBS domain AYJ57_01465 PF00171 Aldehyde dehydrogenase family AYJ57_01490 PF02417 Chromate transporter AYJ57_01500 PF10415 Fumarase C C-terminus AYJ57_01500 PF00206 Lyase AYJ57_01520 PF10397 Adenylosuccinate lyase C-terminus AYJ57_01520 PF00206 Lyase AYJ57_01550 PF00694 Aconitase C-terminal domain AYJ57_01550 PF00330 Aconitase family (aconitate hydratase) AYJ57_01560 PF00296 Luciferase-like monooxygenase AYJ57_01565 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_01565 PF08521 Two-component sensor kinase N-terminal AYJ57_01565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_01570 PF00486 Transcriptional regulatory protein, C terminal AYJ57_01570 PF00072 Response regulator receiver domain AYJ57_01575 PF03734 L,D-transpeptidase catalytic domain AYJ57_01580 PF03734 L,D-transpeptidase catalytic domain AYJ57_01585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYJ57_01585 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYJ57_01590 PF08125 Mannitol dehydrogenase C-terminal domain AYJ57_01590 PF01232 Mannitol dehydrogenase Rossmann domain AYJ57_01600 PF00005 ABC transporter AYJ57_01600 PF08402 TOBE domain AYJ57_01605 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_01610 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_01620 PF04198 Putative sugar-binding domain AYJ57_01625 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_01635 PF00902 Sec-independent protein translocase protein (TatC) AYJ57_01640 PF02416 mttA/Hcf106 family AYJ57_01645 PF02416 mttA/Hcf106 family AYJ57_01650 PF13280 WYL domain AYJ57_01650 PF08279 HTH domain AYJ57_01655 PF01321 Creatinase/Prolidase N-terminal domain AYJ57_01655 PF00557 Metallopeptidase family M24 AYJ57_01665 PF07690 Major Facilitator Superfamily AYJ57_01670 PF08534 Redoxin AYJ57_01675 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AYJ57_01675 PF04055 Radical SAM superfamily AYJ57_01685 PF01250 Ribosomal protein S6 AYJ57_01690 PF01084 Ribosomal protein S18 AYJ57_01695 PF03948 Ribosomal protein L9, C-terminal domain AYJ57_01695 PF01281 Ribosomal protein L9, N-terminal domain AYJ57_01705 PF05697 Bacterial trigger factor protein (TF) AYJ57_01705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ57_01705 PF05698 Bacterial trigger factor protein (TF) C-terminus AYJ57_01710 PF02233 NAD(P) transhydrogenase beta subunit AYJ57_01715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYJ57_01715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYJ57_01715 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AYJ57_01720 PF04191 Phospholipid methyltransferase AYJ57_01725 PF00106 short chain dehydrogenase AYJ57_01730 PF00266 Aminotransferase class-V AYJ57_01735 PF07722 Peptidase C26 AYJ57_01745 PF01274 Malate synthase AYJ57_01750 PF00664 ABC transporter transmembrane region AYJ57_01750 PF00005 ABC transporter AYJ57_01760 PF03641 Possible lysine decarboxylase AYJ57_01775 PF00274 Fructose-bisphosphate aldolase class-I AYJ57_01780 PF00067 Cytochrome P450 AYJ57_01790 PF02683 Cytochrome C biogenesis protein transmembrane region AYJ57_01795 PF00575 S1 RNA binding domain AYJ57_01795 PF10150 Ribonuclease E/G family AYJ57_01795 PF12111 Polyribonucleotide phosphorylase C terminal AYJ57_01805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_01805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_01810 PF01804 Penicillin amidase AYJ57_01820 PF16360 GTP-binding GTPase Middle Region AYJ57_01820 PF01926 50S ribosome-binding GTPase AYJ57_01820 PF13167 GTP-binding GTPase N-terminal AYJ57_01825 PF17209 Hfq protein AYJ57_01830 PF02386 Cation transport protein AYJ57_01835 PF02080 TrkA-C domain AYJ57_01835 PF02254 TrkA-N domain AYJ57_01840 PF00158 Sigma-54 interaction domain AYJ57_01840 PF00072 Response regulator receiver domain AYJ57_01840 PF02954 Bacterial regulatory protein, Fis family AYJ57_01845 PF00672 HAMP domain AYJ57_01845 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_01845 PF00989 PAS fold AYJ57_01845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_01850 PF02954 Bacterial regulatory protein, Fis family AYJ57_01850 PF00072 Response regulator receiver domain AYJ57_01850 PF14532 Sigma-54 interaction domain AYJ57_01855 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_01860 PF01207 Dihydrouridine synthase (Dus) AYJ57_01865 PF02542 YgbB family AYJ57_01865 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AYJ57_01870 PF04608 Phosphatidylglycerophosphatase A AYJ57_01875 PF02464 Competence-damaged protein AYJ57_01880 PF03364 Polyketide cyclase / dehydrase and lipid transport AYJ57_01895 PF01322 Cytochrome C' AYJ57_01900 PF00034 Cytochrome c AYJ57_01910 PF04143 Sulphur transport AYJ57_01915 PF01022 Bacterial regulatory protein, arsR family AYJ57_01925 PF02683 Cytochrome C biogenesis protein transmembrane region AYJ57_01955 PF02872 5'-nucleotidase, C-terminal domain AYJ57_01955 PF00149 Calcineurin-like phosphoesterase AYJ57_01960 PF00174 Oxidoreductase molybdopterin binding domain AYJ57_01965 PF00034 Cytochrome c AYJ57_01975 PF00155 Aminotransferase class I and II AYJ57_01980 PF01134 Glucose inhibited division protein A AYJ57_01990 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ57_01995 PF01502 Phosphoribosyl-AMP cyclohydrolase AYJ57_02005 PF00271 Helicase conserved C-terminal domain AYJ57_02005 PF17191 RecG wedge domain AYJ57_02005 PF00270 DEAD/DEAH box helicase AYJ57_02010 PF01653 NAD-dependent DNA ligase adenylation domain AYJ57_02010 PF03120 NAD-dependent DNA ligase OB-fold domain AYJ57_02010 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AYJ57_02010 PF12826 Helix-hairpin-helix motif AYJ57_02010 PF00533 BRCA1 C Terminus (BRCT) domain AYJ57_02015 PF00072 Response regulator receiver domain AYJ57_02015 PF00486 Transcriptional regulatory protein, C terminal AYJ57_02035 PF00563 EAL domain AYJ57_02035 PF00990 Diguanylate cyclase, GGDEF domain AYJ57_02035 PF03707 Bacterial signalling protein N terminal repeat AYJ57_02040 PF02954 Bacterial regulatory protein, Fis family AYJ57_02040 PF00072 Response regulator receiver domain AYJ57_02040 PF00158 Sigma-54 interaction domain AYJ57_02045 PF02743 Cache domain AYJ57_02045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_02045 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_02055 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_02055 PF00107 Zinc-binding dehydrogenase AYJ57_02060 PF04204 Homoserine O-succinyltransferase AYJ57_02065 PF00561 alpha/beta hydrolase fold AYJ57_02070 PF03976 Polyphosphate kinase 2 (PPK2) AYJ57_02080 PF00534 Glycosyl transferases group 1 AYJ57_02080 PF13439 Glycosyltransferase Family 4 AYJ57_02090 PF00380 Ribosomal protein S9/S16 AYJ57_02095 PF00572 Ribosomal protein L13 AYJ57_02100 PF00155 Aminotransferase class I and II AYJ57_02100 PF00392 Bacterial regulatory proteins, gntR family AYJ57_02110 PF01761 3-dehydroquinate synthase AYJ57_02115 PF01202 Shikimate kinase AYJ57_02125 PF02899 Phage integrase, N-terminal SAM-like domain AYJ57_02125 PF00589 Phage integrase family AYJ57_02130 PF00696 Amino acid kinase family AYJ57_02150 PF03150 Di-haem cytochrome c peroxidase AYJ57_02155 PF01464 Transglycosylase SLT domain AYJ57_02160 PF00436 Single-strand binding protein family AYJ57_02170 PF01595 Cyclin M transmembrane N-terminal domain AYJ57_02170 PF03471 Transporter associated domain AYJ57_02170 PF00571 CBS domain AYJ57_02190 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AYJ57_02195 PF01259 SAICAR synthetase AYJ57_02205 PF00672 HAMP domain AYJ57_02205 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_02205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_02210 PF00753 Metallo-beta-lactamase superfamily AYJ57_02210 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYJ57_02220 PF00072 Response regulator receiver domain AYJ57_02220 PF00486 Transcriptional regulatory protein, C terminal AYJ57_02235 PF00491 Arginase family AYJ57_02260 PF01882 Protein of unknown function DUF58 AYJ57_02265 PF17863 AAA lid domain AYJ57_02265 PF07726 ATPase family associated with various cellular activities (AAA) AYJ57_02275 PF00884 Sulfatase AYJ57_02285 PF03466 LysR substrate binding domain AYJ57_02285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_02290 PF06628 Catalase-related immune-responsive AYJ57_02290 PF00199 Catalase AYJ57_02320 PF00117 Glutamine amidotransferase class-I AYJ57_02320 PF02540 NAD synthase AYJ57_02320 PF00958 GMP synthase C terminal domain AYJ57_02325 PF03702 Anhydro-N-acetylmuramic acid kinase AYJ57_02330 PF00579 tRNA synthetases class I (W and Y) AYJ57_02340 PF00892 EamA-like transporter family AYJ57_02350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ57_02350 PF00672 HAMP domain AYJ57_02350 PF02203 Tar ligand binding domain homologue AYJ57_02350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ57_02350 PF00672 HAMP domain AYJ57_02350 PF02203 Tar ligand binding domain homologue AYJ57_02360 PF00893 Small Multidrug Resistance protein AYJ57_02370 PF01979 Amidohydrolase family AYJ57_02390 PF02272 DHHA1 domain AYJ57_02390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYJ57_02390 PF01411 tRNA synthetases class II (A) AYJ57_02420 PF00462 Glutaredoxin AYJ57_02435 PF03100 CcmE AYJ57_02440 PF01177 Asp/Glu/Hydantoin racemase AYJ57_02450 PF03466 LysR substrate binding domain AYJ57_02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_02455 PF01209 ubiE/COQ5 methyltransferase family AYJ57_02460 PF00586 AIR synthase related protein, N-terminal domain AYJ57_02460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AYJ57_02460 PF02769 AIR synthase related protein, C-terminal domain AYJ57_02475 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AYJ57_02480 PF02628 Cytochrome oxidase assembly protein AYJ57_02485 PF00588 SpoU rRNA Methylase family AYJ57_02490 PF00583 Acetyltransferase (GNAT) family AYJ57_02495 PF02581 Thiamine monophosphate synthase AYJ57_02515 PF10090 Histidine phosphotransferase C-terminal domain AYJ57_02520 PF00171 Aldehyde dehydrogenase family AYJ57_02525 PF00696 Amino acid kinase family AYJ57_02525 PF01472 PUA domain AYJ57_02530 PF01018 GTP1/OBG AYJ57_02530 PF01926 50S ribosome-binding GTPase AYJ57_02555 PF01883 Iron-sulfur cluster assembly protein AYJ57_02565 PF13302 Acetyltransferase (GNAT) domain AYJ57_02570 PF01521 Iron-sulphur cluster biosynthesis AYJ57_02575 PF00121 Triosephosphate isomerase AYJ57_02585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_02590 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AYJ57_02595 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_02600 PF00072 Response regulator receiver domain AYJ57_02600 PF00158 Sigma-54 interaction domain AYJ57_02600 PF02954 Bacterial regulatory protein, Fis family AYJ57_02605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_02605 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_02605 PF02743 Cache domain AYJ57_02610 PF00067 Cytochrome P450 AYJ57_02615 PF12706 Beta-lactamase superfamily domain AYJ57_02615 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AYJ57_02615 PF17770 Ribonuclease J C-terminal domain AYJ57_02620 PF03309 Type III pantothenate kinase AYJ57_02625 PF02237 Biotin protein ligase C terminal domain AYJ57_02625 PF03099 Biotin/lipoate A/B protein ligase family AYJ57_02630 PF00361 Proton-conducting membrane transporter AYJ57_02635 PF00361 Proton-conducting membrane transporter AYJ57_02640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYJ57_02640 PF00361 Proton-conducting membrane transporter AYJ57_02645 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYJ57_02650 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AYJ57_02655 PF02627 Carboxymuconolactone decarboxylase family AYJ57_02660 PF12838 4Fe-4S dicluster domain AYJ57_02665 PF00146 NADH dehydrogenase AYJ57_02675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYJ57_02675 PF00384 Molybdopterin oxidoreductase AYJ57_02675 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AYJ57_02695 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYJ57_02695 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYJ57_02695 PF10531 SLBB domain AYJ57_02720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AYJ57_02725 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AYJ57_02730 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ57_02735 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AYJ57_02740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_02740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_02740 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_02745 PF00682 HMGL-like AYJ57_02750 PF14497 Glutathione S-transferase, C-terminal domain AYJ57_02750 PF02798 Glutathione S-transferase, N-terminal domain AYJ57_02755 PF00289 Biotin carboxylase, N-terminal domain AYJ57_02755 PF02785 Biotin carboxylase C-terminal domain AYJ57_02755 PF00364 Biotin-requiring enzyme AYJ57_02755 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ57_02760 PF01039 Carboxyl transferase domain AYJ57_02765 PF00501 AMP-binding enzyme AYJ57_02765 PF13193 AMP-binding enzyme C-terminal domain AYJ57_02775 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_02775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_02775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_02790 PF01494 FAD binding domain AYJ57_02795 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYJ57_02800 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ57_02800 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_02800 PF07724 AAA domain (Cdc48 subfamily) AYJ57_02800 PF02861 Clp amino terminal domain, pathogenicity island component AYJ57_02800 PF17871 AAA lid domain AYJ57_02805 PF00270 DEAD/DEAH box helicase AYJ57_02805 PF00271 Helicase conserved C-terminal domain AYJ57_02810 PF02566 OsmC-like protein AYJ57_02820 PF01037 Lrp/AsnC ligand binding domain AYJ57_02830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYJ57_02830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYJ57_02835 PF01507 Phosphoadenosine phosphosulfate reductase family AYJ57_02845 PF00175 Oxidoreductase NAD-binding domain AYJ57_02845 PF00970 Oxidoreductase FAD-binding domain AYJ57_02850 PF07687 Peptidase dimerisation domain AYJ57_02850 PF01546 Peptidase family M20/M25/M40 AYJ57_02855 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_02865 PF03401 Tripartite tricarboxylate transporter family receptor AYJ57_02885 PF00707 Translation initiation factor IF-3, C-terminal domain AYJ57_02885 PF05198 Translation initiation factor IF-3, N-terminal domain AYJ57_02895 PF13478 XdhC Rossmann domain AYJ57_02895 PF02625 XdhC and CoxI family AYJ57_02900 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ57_02905 PF03466 LysR substrate binding domain AYJ57_02905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_02915 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_02920 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_02920 PF12804 MobA-like NTP transferase domain AYJ57_02925 PF01380 SIS domain AYJ57_02930 PF00266 Aminotransferase class-V AYJ57_02945 PF01458 Uncharacterized protein family (UPF0051) AYJ57_02950 PF00005 ABC transporter AYJ57_02960 PF01906 Putative heavy-metal-binding AYJ57_02970 PF01458 Uncharacterized protein family (UPF0051) AYJ57_02975 PF00266 Aminotransferase class-V AYJ57_02980 PF02082 Transcriptional regulator AYJ57_02985 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AYJ57_03000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ57_03000 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_03025 PF02547 Queuosine biosynthesis protein AYJ57_03035 PF00578 AhpC/TSA family AYJ57_03040 PF01551 Peptidase family M23 AYJ57_03040 PF08525 Opacity-associated protein A N-terminal motif AYJ57_03040 PF01476 LysM domain AYJ57_03075 PF07690 Major Facilitator Superfamily AYJ57_03085 PF00682 HMGL-like AYJ57_03085 PF08502 LeuA allosteric (dimerisation) domain AYJ57_03090 PF01406 tRNA synthetases class I (C) catalytic domain AYJ57_03090 PF09190 DALR domain AYJ57_03105 PF05175 Methyltransferase small domain AYJ57_03105 PF17827 PrmC N-terminal domain AYJ57_03110 PF00472 RF-1 domain AYJ57_03110 PF03462 PCRF domain AYJ57_03120 PF00491 Arginase family AYJ57_03125 PF01546 Peptidase family M20/M25/M40 AYJ57_03125 PF07687 Peptidase dimerisation domain AYJ57_03130 PF07687 Peptidase dimerisation domain AYJ57_03130 PF01546 Peptidase family M20/M25/M40 AYJ57_03135 PF03819 MazG nucleotide pyrophosphohydrolase domain AYJ57_03140 PF13416 Bacterial extracellular solute-binding protein AYJ57_03145 PF07969 Amidohydrolase family AYJ57_03150 PF06299 Protein of unknown function (DUF1045) AYJ57_03160 PF00005 ABC transporter AYJ57_03165 PF00005 ABC transporter AYJ57_03170 PF06007 Phosphonate metabolism protein PhnJ AYJ57_03180 PF05861 Bacterial phosphonate metabolism protein (PhnI) AYJ57_03190 PF06754 Phosphonate metabolism protein PhnG AYJ57_03195 PF07702 UTRA domain AYJ57_03195 PF00392 Bacterial regulatory proteins, gntR family AYJ57_03200 PF07969 Amidohydrolase family AYJ57_03205 PF13407 Periplasmic binding protein domain AYJ57_03210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ57_03210 PF00672 HAMP domain AYJ57_03215 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_03220 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_03225 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_03235 PF00005 ABC transporter AYJ57_03245 PF01244 Membrane dipeptidase (Peptidase family M19) AYJ57_03250 PF08543 Phosphomethylpyrimidine kinase AYJ57_03255 PF02581 Thiamine monophosphate synthase AYJ57_03260 PF02110 Hydroxyethylthiazole kinase family AYJ57_03265 PF01964 Radical SAM ThiC family AYJ57_03265 PF13667 ThiC-associated domain AYJ57_03270 PF00698 Acyl transferase domain AYJ57_03275 PF13458 Periplasmic binding protein AYJ57_03285 PF00005 ABC transporter AYJ57_03285 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_03290 PF00005 ABC transporter AYJ57_03295 PF12802 MarR family AYJ57_03300 PF00873 AcrB/AcrD/AcrF family AYJ57_03305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_03305 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_03315 PF13632 Glycosyl transferase family group 2 AYJ57_03320 PF04349 Periplasmic glucan biosynthesis protein, MdoG AYJ57_03335 PF01425 Amidase AYJ57_03340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_03340 PF00005 ABC transporter AYJ57_03345 PF00005 ABC transporter AYJ57_03345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_03350 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_03350 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_03355 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_03360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_03365 PF01270 Glycosyl hydrolases family 8 AYJ57_03375 PF07238 PilZ domain AYJ57_03375 PF00535 Glycosyl transferase family 2 AYJ57_03375 PF03552 Cellulose synthase AYJ57_03375 PF03170 Bacterial cellulose synthase subunit AYJ57_03385 PF00108 Thiolase, N-terminal domain AYJ57_03385 PF02803 Thiolase, C-terminal domain AYJ57_03390 PF01144 Coenzyme A transferase AYJ57_03395 PF01144 Coenzyme A transferase AYJ57_03400 PF09339 IclR helix-turn-helix domain AYJ57_03400 PF01614 Bacterial transcriptional regulator AYJ57_03405 PF13180 PDZ domain AYJ57_03415 PF01145 SPFH domain / Band 7 family AYJ57_03420 PF12221 Bacterial membrane protein N terminal AYJ57_03420 PF01145 SPFH domain / Band 7 family AYJ57_03425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_03425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ57_03430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AYJ57_03435 PF03313 Serine dehydratase alpha chain AYJ57_03435 PF03315 Serine dehydratase beta chain AYJ57_03445 PF00583 Acetyltransferase (GNAT) family AYJ57_03445 PF13508 Acetyltransferase (GNAT) domain AYJ57_03455 PF02769 AIR synthase related protein, C-terminal domain AYJ57_03455 PF00586 AIR synthase related protein, N-terminal domain AYJ57_03460 PF01924 Hydrogenase formation hypA family AYJ57_03465 PF01455 HupF/HypC family AYJ57_03470 PF00158 Sigma-54 interaction domain AYJ57_03470 PF02954 Bacterial regulatory protein, Fis family AYJ57_03470 PF00072 Response regulator receiver domain AYJ57_03475 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ57_03480 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AYJ57_03490 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AYJ57_03490 PF00301 Rubredoxin AYJ57_03495 PF04809 HupH hydrogenase expression protein, C-terminal conserved region AYJ57_03500 PF07449 Hydrogenase-1 expression protein HyaE AYJ57_03505 PF01455 HupF/HypC family AYJ57_03510 PF01750 Hydrogenase maturation protease AYJ57_03515 PF01292 Prokaryotic cytochrome b561 AYJ57_03525 PF00374 Nickel-dependent hydrogenase AYJ57_03530 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ57_03530 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AYJ57_03535 PF07503 HypF finger AYJ57_03535 PF00708 Acylphosphatase AYJ57_03535 PF17788 HypF Kae1-like domain AYJ57_03535 PF01300 Telomere recombination AYJ57_03540 PF00374 Nickel-dependent hydrogenase AYJ57_03545 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AYJ57_03545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AYJ57_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_03550 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_03550 PF02743 Cache domain AYJ57_03570 PF02653 Branched-chain amino acid transport system / permease component AYJ57_03580 PF07969 Amidohydrolase family AYJ57_03595 PF17768 RecJ OB domain AYJ57_03595 PF01368 DHH family AYJ57_03595 PF02272 DHHA1 domain AYJ57_03600 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AYJ57_03605 PF03447 Homoserine dehydrogenase, NAD binding domain AYJ57_03605 PF00742 Homoserine dehydrogenase AYJ57_03605 PF01842 ACT domain AYJ57_03635 PF00005 ABC transporter AYJ57_03640 PF12704 MacB-like periplasmic core domain AYJ57_03640 PF02687 FtsX-like permease family AYJ57_03645 PF04264 YceI-like domain AYJ57_03650 PF00155 Aminotransferase class I and II AYJ57_03660 PF00266 Aminotransferase class-V AYJ57_03670 PF00664 ABC transporter transmembrane region AYJ57_03670 PF00005 ABC transporter AYJ57_03675 PF01571 Aminomethyltransferase folate-binding domain AYJ57_03675 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_03690 PF08207 Elongation factor P (EF-P) KOW-like domain AYJ57_03690 PF09285 Elongation factor P, C-terminal AYJ57_03690 PF01132 Elongation factor P (EF-P) OB domain AYJ57_03705 PF02321 Outer membrane efflux protein AYJ57_03730 PF01568 Molydopterin dinucleotide binding domain AYJ57_03730 PF00384 Molybdopterin oxidoreductase AYJ57_03740 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_03740 PF13426 PAS domain AYJ57_03740 PF00672 HAMP domain AYJ57_03750 PF00072 Response regulator receiver domain AYJ57_03750 PF00486 Transcriptional regulatory protein, C terminal AYJ57_03755 PF01381 Helix-turn-helix AYJ57_03755 PF06114 IrrE N-terminal-like domain AYJ57_03755 PF09856 Predicted transcriptional regulator (DUF2083) AYJ57_03765 PF02653 Branched-chain amino acid transport system / permease component AYJ57_03775 PF00005 ABC transporter AYJ57_03775 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_03780 PF00005 ABC transporter AYJ57_03785 PF13193 AMP-binding enzyme C-terminal domain AYJ57_03785 PF00501 AMP-binding enzyme AYJ57_03785 PF16177 Acetyl-coenzyme A synthetase N-terminus AYJ57_03795 PF00364 Biotin-requiring enzyme AYJ57_03800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ57_03800 PF02785 Biotin carboxylase C-terminal domain AYJ57_03800 PF00289 Biotin carboxylase, N-terminal domain AYJ57_03805 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AYJ57_03835 PF07724 AAA domain (Cdc48 subfamily) AYJ57_03835 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ57_03835 PF06689 ClpX C4-type zinc finger AYJ57_03840 PF00574 Clp protease AYJ57_03845 PF01545 Cation efflux family AYJ57_03850 PF00677 Lumazine binding domain AYJ57_03855 PF05159 Capsule polysaccharide biosynthesis protein AYJ57_03865 PF05159 Capsule polysaccharide biosynthesis protein AYJ57_03870 PF00950 ABC 3 transport family AYJ57_03875 PF00005 ABC transporter AYJ57_03880 PF01475 Ferric uptake regulator family AYJ57_03885 PF01297 Zinc-uptake complex component A periplasmic AYJ57_03890 PF01497 Periplasmic binding protein AYJ57_03895 PF01032 FecCD transport family AYJ57_03900 PF01032 FecCD transport family AYJ57_03905 PF00005 ABC transporter AYJ57_03910 PF08021 Siderophore-interacting FAD-binding domain AYJ57_03910 PF04954 Siderophore-interacting protein AYJ57_03915 PF03746 LamB/YcsF family AYJ57_03920 PF02626 Carboxyltransferase domain, subdomain A and B AYJ57_03925 PF02682 Carboxyltransferase domain, subdomain C and D AYJ57_03935 PF03884 DNA gyrase inhibitor YacG AYJ57_03940 PF10150 Ribonuclease E/G family AYJ57_03940 PF00575 S1 RNA binding domain AYJ57_03940 PF12111 Polyribonucleotide phosphorylase C terminal AYJ57_03945 PF02545 Maf-like protein AYJ57_03950 PF01176 Translation initiation factor 1A / IF-1 AYJ57_03955 PF00795 Carbon-nitrogen hydrolase AYJ57_03975 PF06793 Uncharacterised protein family (UPF0262) AYJ57_03995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYJ57_04010 PF01928 CYTH domain AYJ57_04015 PF13614 AAA domain AYJ57_04035 PF08278 DNA primase DnaG DnaB-binding AYJ57_04035 PF08275 DNA primase catalytic core, N-terminal domain AYJ57_04035 PF01807 CHC2 zinc finger AYJ57_04035 PF10410 DnaB-helicase binding domain of primase AYJ57_04035 PF13662 Toprim domain AYJ57_04040 PF04546 Sigma-70, non-essential region AYJ57_04040 PF04539 Sigma-70 region 3 AYJ57_04040 PF03979 Sigma-70 factor, region 1.1 AYJ57_04040 PF04545 Sigma-70, region 4 AYJ57_04040 PF00140 Sigma-70 factor, region 1.2 AYJ57_04040 PF04542 Sigma-70 region 2 AYJ57_04055 PF16363 GDP-mannose 4,6 dehydratase AYJ57_04060 PF17243 POTRA domain TamA domain 1 AYJ57_04060 PF01103 Surface antigen AYJ57_04075 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ57_04080 PF01730 UreF AYJ57_04085 PF05194 UreE urease accessory protein, C-terminal domain AYJ57_04085 PF02814 UreE urease accessory protein, N-terminal domain AYJ57_04095 PF01979 Amidohydrolase family AYJ57_04095 PF00449 Urease alpha-subunit, N-terminal domain AYJ57_04105 PF00034 Cytochrome c AYJ57_04105 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_04105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ57_04120 PF00699 Urease beta subunit AYJ57_04125 PF00547 Urease, gamma subunit AYJ57_04130 PF01774 UreD urease accessory protein AYJ57_04135 PF01980 tRNA-methyltransferase O AYJ57_04140 PF01081 KDPG and KHG aldolase AYJ57_04145 PF05035 2-keto-3-deoxy-galactonokinase AYJ57_04160 PF01841 Transglutaminase-like superfamily AYJ57_04160 PF08379 Bacterial transglutaminase-like N-terminal region AYJ57_04165 PF14403 Circularly permuted ATP-grasp type 2 AYJ57_04165 PF04168 A predicted alpha-helical domain with a conserved ER motif. AYJ57_04175 PF00106 short chain dehydrogenase AYJ57_04185 PF01894 Uncharacterised protein family UPF0047 AYJ57_04190 PF03477 ATP cone domain AYJ57_04195 PF01872 RibD C-terminal domain AYJ57_04195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYJ57_04200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYJ57_04200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYJ57_04225 PF01817 Chorismate mutase type II AYJ57_04225 PF00800 Prephenate dehydratase AYJ57_04225 PF01842 ACT domain AYJ57_04230 PF00034 Cytochrome c AYJ57_04235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_04240 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04245 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_04245 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04250 PF00005 ABC transporter AYJ57_04250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_04255 PF04055 Radical SAM superfamily AYJ57_04260 PF13545 Crp-like helix-turn-helix domain AYJ57_04260 PF00027 Cyclic nucleotide-binding domain AYJ57_04265 PF07237 Protein of unknown function (DUF1428) AYJ57_04280 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYJ57_04295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ57_04295 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AYJ57_04300 PF03466 LysR substrate binding domain AYJ57_04300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_04305 PF12801 4Fe-4S binding domain AYJ57_04305 PF13746 4Fe-4S dicluster domain AYJ57_04305 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AYJ57_04315 PF00403 Heavy-metal-associated domain AYJ57_04330 PF00732 GMC oxidoreductase AYJ57_04330 PF05199 GMC oxidoreductase AYJ57_04335 PF01037 Lrp/AsnC ligand binding domain AYJ57_04340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AYJ57_04340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AYJ57_04345 PF01545 Cation efflux family AYJ57_04345 PF16916 Dimerisation domain of Zinc Transporter AYJ57_04350 PF01741 Large-conductance mechanosensitive channel, MscL AYJ57_04355 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ AYJ57_04365 PF16350 FAD dependent oxidoreductase central domain AYJ57_04365 PF01571 Aminomethyltransferase folate-binding domain AYJ57_04365 PF01266 FAD dependent oxidoreductase AYJ57_04365 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_04375 PF04085 rod shape-determining protein MreC AYJ57_04385 PF03717 Penicillin-binding Protein dimerisation domain AYJ57_04385 PF00905 Penicillin binding protein transpeptidase domain AYJ57_04390 PF01098 Cell cycle protein AYJ57_04395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_04400 PF00834 Ribulose-phosphate 3 epimerase family AYJ57_04405 PF00916 Sulfate permease family AYJ57_04405 PF01740 STAS domain AYJ57_04415 PF01048 Phosphorylase superfamily AYJ57_04420 PF01810 LysE type translocator AYJ57_04425 PF00156 Phosphoribosyl transferase domain AYJ57_04430 PF01554 MatE AYJ57_04445 PF09278 MerR, DNA binding AYJ57_04445 PF00376 MerR family regulatory protein AYJ57_04450 PF09278 MerR, DNA binding AYJ57_04450 PF00376 MerR family regulatory protein AYJ57_04460 PF00043 Glutathione S-transferase, C-terminal domain AYJ57_04460 PF02798 Glutathione S-transferase, N-terminal domain AYJ57_04485 PF00816 H-NS histone family AYJ57_04490 PF01048 Phosphorylase superfamily AYJ57_04500 PF01757 Acyltransferase family AYJ57_04510 PF13237 4Fe-4S dicluster domain AYJ57_04510 PF13085 2Fe-2S iron-sulfur cluster binding domain AYJ57_04520 PF02910 Fumarate reductase flavoprotein C-term AYJ57_04520 PF00890 FAD binding domain AYJ57_04525 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYJ57_04530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AYJ57_04535 PF01575 MaoC like domain AYJ57_04550 PF03328 HpcH/HpaI aldolase/citrate lyase family AYJ57_04560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYJ57_04565 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04570 PF00005 ABC transporter AYJ57_04575 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04580 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYJ57_04580 PF00056 lactate/malate dehydrogenase, NAD binding domain AYJ57_04585 PF08442 ATP-grasp domain AYJ57_04585 PF00549 CoA-ligase AYJ57_04590 PF00549 CoA-ligase AYJ57_04590 PF02629 CoA binding domain AYJ57_04595 PF00676 Dehydrogenase E1 component AYJ57_04595 PF02779 Transketolase, pyrimidine binding domain AYJ57_04595 PF16870 2-oxoglutarate dehydrogenase C-terminal AYJ57_04595 PF16078 2-oxoglutarate dehydrogenase N-terminus AYJ57_04600 PF02817 e3 binding domain AYJ57_04600 PF00364 Biotin-requiring enzyme AYJ57_04600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYJ57_04615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_04615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ57_04640 PF00005 ABC transporter AYJ57_04650 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04655 PF00005 ABC transporter AYJ57_04665 PF00202 Aminotransferase class-III AYJ57_04680 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AYJ57_04680 PF01048 Phosphorylase superfamily AYJ57_04690 PF01464 Transglycosylase SLT domain AYJ57_04690 PF10145 Phage-related minor tail protein AYJ57_04690 PF01551 Peptidase family M23 AYJ57_04700 PF14489 QueF-like protein AYJ57_04705 PF04055 Radical SAM superfamily AYJ57_04710 PF01242 6-pyruvoyl tetrahydropterin synthase AYJ57_04715 PF06508 Queuosine biosynthesis protein QueC AYJ57_04720 PF02780 Transketolase, C-terminal domain AYJ57_04720 PF02779 Transketolase, pyrimidine binding domain AYJ57_04720 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AYJ57_04725 PF00348 Polyprenyl synthetase AYJ57_04730 PF02609 Exonuclease VII small subunit AYJ57_04735 PF00850 Histone deacetylase domain AYJ57_04740 PF00072 Response regulator receiver domain AYJ57_04740 PF00486 Transcriptional regulatory protein, C terminal AYJ57_04745 PF12802 MarR family AYJ57_04750 PF01063 Amino-transferase class IV AYJ57_04760 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04765 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_04775 PF00005 ABC transporter AYJ57_04775 PF08402 TOBE domain AYJ57_04780 PF01546 Peptidase family M20/M25/M40 AYJ57_04780 PF07687 Peptidase dimerisation domain AYJ57_04790 PF00925 GTP cyclohydrolase II AYJ57_04795 PF00486 Transcriptional regulatory protein, C terminal AYJ57_04795 PF00072 Response regulator receiver domain AYJ57_04805 PF00013 KH domain AYJ57_04805 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AYJ57_04805 PF01138 3' exoribonuclease family, domain 1 AYJ57_04805 PF00575 S1 RNA binding domain AYJ57_04805 PF03725 3' exoribonuclease family, domain 2 AYJ57_04810 PF00312 Ribosomal protein S15 AYJ57_04825 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_04830 PF03966 Trm112p-like protein AYJ57_04840 PF00085 Thioredoxin AYJ57_04850 PF13396 Phospholipase_D-nuclease N-terminal AYJ57_04850 PF13091 PLD-like domain AYJ57_04855 PF03372 Endonuclease/Exonuclease/phosphatase family AYJ57_04865 PF02772 S-adenosylmethionine synthetase, central domain AYJ57_04865 PF02773 S-adenosylmethionine synthetase, C-terminal domain AYJ57_04865 PF00438 S-adenosylmethionine synthetase, N-terminal domain AYJ57_04870 PF00795 Carbon-nitrogen hydrolase AYJ57_04875 PF00571 CBS domain AYJ57_04875 PF03471 Transporter associated domain AYJ57_04880 PF02130 Uncharacterized protein family UPF0054 AYJ57_04885 PF02562 PhoH-like protein AYJ57_04895 PF00691 OmpA family AYJ57_04900 PF04055 Radical SAM superfamily AYJ57_04900 PF01938 TRAM domain AYJ57_04900 PF00919 Uncharacterized protein family UPF0004 AYJ57_04910 PF00175 Oxidoreductase NAD-binding domain AYJ57_04910 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_04910 PF00970 Oxidoreductase FAD-binding domain AYJ57_04915 PF01475 Ferric uptake regulator family AYJ57_04920 PF07977 FabA-like domain AYJ57_04925 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_04925 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_04935 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AYJ57_04935 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AYJ57_04940 PF00857 Isochorismatase family AYJ57_04945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_04945 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_04965 PF01037 Lrp/AsnC ligand binding domain AYJ57_04970 PF14850 DNA-binding domain of Proline dehydrogenase AYJ57_04970 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AYJ57_04970 PF01619 Proline dehydrogenase AYJ57_04970 PF00171 Aldehyde dehydrogenase family AYJ57_04985 PF00459 Inositol monophosphatase family AYJ57_04995 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ57_05000 PF00884 Sulfatase AYJ57_05000 PF12411 Choline sulfatase enzyme C terminal AYJ57_05005 PF03466 LysR substrate binding domain AYJ57_05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_05020 PF01381 Helix-turn-helix AYJ57_05035 PF01435 Peptidase family M48 AYJ57_05045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_05060 PF00303 Thymidylate synthase AYJ57_05065 PF00186 Dihydrofolate reductase AYJ57_05090 PF00204 DNA gyrase B AYJ57_05090 PF00986 DNA gyrase B subunit, carboxyl terminus AYJ57_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_05090 PF01751 Toprim domain AYJ57_05115 PF05532 CsbD-like AYJ57_05135 PF13091 PLD-like domain AYJ57_05140 PF01594 AI-2E family transporter AYJ57_05165 PF17757 UvrB interaction domain AYJ57_05165 PF12344 Ultra-violet resistance protein B AYJ57_05165 PF02151 UvrB/uvrC motif AYJ57_05165 PF04851 Type III restriction enzyme, res subunit AYJ57_05165 PF00271 Helicase conserved C-terminal domain AYJ57_05185 PF18766 SWI2/SNF2 ATPase AYJ57_05185 PF11867 Domain of unknown function (DUF3387) AYJ57_05185 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AYJ57_05195 PF02384 N-6 DNA Methylase AYJ57_05230 PF08173 Membrane bound YbgT-like protein AYJ57_05235 PF02322 Cytochrome bd terminal oxidase subunit II AYJ57_05240 PF01654 Cytochrome bd terminal oxidase subunit I AYJ57_05245 PF00664 ABC transporter transmembrane region AYJ57_05245 PF00005 ABC transporter AYJ57_05250 PF00664 ABC transporter transmembrane region AYJ57_05250 PF00005 ABC transporter AYJ57_05265 PF03069 Acetamidase/Formamidase family AYJ57_05270 PF00873 AcrB/AcrD/AcrF family AYJ57_05275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_05275 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_05290 PF00005 ABC transporter AYJ57_05295 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_05305 PF01464 Transglycosylase SLT domain AYJ57_05305 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_05310 PF01565 FAD binding domain AYJ57_05310 PF02913 FAD linked oxidases, C-terminal domain AYJ57_05315 PF17391 Urocanase N-terminal domain AYJ57_05315 PF17392 Urocanase C-terminal domain AYJ57_05315 PF01175 Urocanase Rossmann-like domain AYJ57_05325 PF00221 Aromatic amino acid lyase AYJ57_05330 PF01979 Amidohydrolase family AYJ57_05335 PF00296 Luciferase-like monooxygenase AYJ57_05340 PF01594 AI-2E family transporter AYJ57_05350 PF03631 Virulence factor BrkB AYJ57_05360 PF00781 Diacylglycerol kinase catalytic domain AYJ57_05380 PF01625 Peptide methionine sulfoxide reductase AYJ57_05385 PF01641 SelR domain AYJ57_05395 PF08331 Domain of unknown function (DUF1730) AYJ57_05400 PF13417 Glutathione S-transferase, N-terminal domain AYJ57_05400 PF00043 Glutathione S-transferase, C-terminal domain AYJ57_05405 PF00912 Transglycosylase AYJ57_05410 PF00310 Glutamine amidotransferases class-II AYJ57_05410 PF04898 Glutamate synthase central domain AYJ57_05410 PF01493 GXGXG motif AYJ57_05410 PF01645 Conserved region in glutamate synthase AYJ57_05420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_05420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AYJ57_05425 PF02673 Bacitracin resistance protein BacA AYJ57_05430 PF02590 Predicted SPOUT methyltransferase AYJ57_05440 PF00171 Aldehyde dehydrogenase family AYJ57_05445 PF01791 DeoC/LacD family aldolase AYJ57_05460 PF00155 Aminotransferase class I and II AYJ57_05465 PF00581 Rhodanese-like domain AYJ57_05470 PF01668 SmpB protein AYJ57_05480 PF05899 Protein of unknown function (DUF861) AYJ57_05480 PF07883 Cupin domain AYJ57_05485 PF04115 Ureidoglycolate lyase AYJ57_05490 PF00860 Permease family AYJ57_05515 PF13406 Transglycosylase SLT domain AYJ57_05520 PF02630 SCO1/SenC AYJ57_05535 PF00455 DeoR C terminal sensor domain AYJ57_05535 PF08220 DeoR-like helix-turn-helix domain AYJ57_05540 PF00596 Class II Aldolase and Adducin N-terminal domain AYJ57_05545 PF00561 alpha/beta hydrolase fold AYJ57_05550 PF01042 Endoribonuclease L-PSP AYJ57_05555 PF00857 Isochorismatase family AYJ57_05560 PF00296 Luciferase-like monooxygenase AYJ57_05575 PF13439 Glycosyltransferase Family 4 AYJ57_05575 PF00534 Glycosyl transferases group 1 AYJ57_05580 PF13439 Glycosyltransferase Family 4 AYJ57_05580 PF00534 Glycosyl transferases group 1 AYJ57_05590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ57_05590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ57_05590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ57_05610 PF16363 GDP-mannose 4,6 dehydratase AYJ57_05620 PF00582 Universal stress protein family AYJ57_05625 PF00072 Response regulator receiver domain AYJ57_05625 PF00486 Transcriptional regulatory protein, C terminal AYJ57_05640 PF02899 Phage integrase, N-terminal SAM-like domain AYJ57_05640 PF00589 Phage integrase family AYJ57_05645 PF01351 Ribonuclease HII AYJ57_05650 PF18755 Restriction Enzyme Adenine Methylase Associated AYJ57_05650 PF01555 DNA methylase AYJ57_05655 PF00672 HAMP domain AYJ57_05655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ57_05660 PF01264 Chorismate synthase AYJ57_05670 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_05675 PF00005 ABC transporter AYJ57_05680 PF02167 Cytochrome C1 family AYJ57_05685 PF00033 Cytochrome b/b6/petB AYJ57_05685 PF00032 Cytochrome b(C-terminal)/b6/petD AYJ57_05690 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AYJ57_05690 PF00355 Rieske [2Fe-2S] domain AYJ57_05700 PF08274 PhnA Zinc-Ribbon AYJ57_05700 PF03831 PhnA domain AYJ57_05705 PF01066 CDP-alcohol phosphatidyltransferase AYJ57_05710 PF02666 Phosphatidylserine decarboxylase AYJ57_05720 PF00118 TCP-1/cpn60 chaperonin family AYJ57_05725 PF00166 Chaperonin 10 Kd subunit AYJ57_05730 PF00892 EamA-like transporter family AYJ57_05745 PF01432 Peptidase family M3 AYJ57_05750 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_05760 PF00899 ThiF family AYJ57_05765 PF00692 dUTPase AYJ57_05770 PF02441 Flavoprotein AYJ57_05770 PF04127 DNA / pantothenate metabolism flavoprotein AYJ57_05780 PF04545 Sigma-70, region 4 AYJ57_05780 PF00140 Sigma-70 factor, region 1.2 AYJ57_05780 PF04542 Sigma-70 region 2 AYJ57_05785 PF01078 Magnesium chelatase, subunit ChlI AYJ57_05785 PF13335 Magnesium chelatase, subunit ChlI C-terminal AYJ57_05790 PF07859 alpha/beta hydrolase fold AYJ57_05795 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AYJ57_05795 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AYJ57_05800 PF02021 Uncharacterised protein family UPF0102 AYJ57_05805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYJ57_05815 PF08335 GlnD PII-uridylyltransferase AYJ57_05815 PF01966 HD domain AYJ57_05820 PF00313 'Cold-shock' DNA-binding domain AYJ57_05825 PF00270 DEAD/DEAH box helicase AYJ57_05825 PF00271 Helicase conserved C-terminal domain AYJ57_05830 PF07969 Amidohydrolase family AYJ57_05835 PF02386 Cation transport protein AYJ57_05840 PF03023 Lipid II flippase MurJ AYJ57_05845 PF13091 PLD-like domain AYJ57_05855 PF00579 tRNA synthetases class I (W and Y) AYJ57_05870 PF05496 Holliday junction DNA helicase RuvB P-loop domain AYJ57_05870 PF17864 RuvB AAA lid domain AYJ57_05870 PF05491 RuvB C-terminal winged helix domain AYJ57_05875 PF07499 RuvA, C-terminal domain AYJ57_05875 PF01330 RuvA N terminal domain AYJ57_05880 PF02075 Crossover junction endodeoxyribonuclease RuvC AYJ57_05905 PF07883 Cupin domain AYJ57_05910 PF04143 Sulphur transport AYJ57_05915 PF01218 Coproporphyrinogen III oxidase AYJ57_05925 PF08468 Methyltransferase small domain N-terminal AYJ57_05925 PF05175 Methyltransferase small domain AYJ57_05930 PF02617 ATP-dependent Clp protease adaptor protein ClpS AYJ57_05940 PF07943 Penicillin-binding protein 5, C-terminal domain AYJ57_05940 PF00768 D-alanyl-D-alanine carboxypeptidase AYJ57_05945 PF01165 Ribosomal protein S21 AYJ57_05965 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_05965 PF00107 Zinc-binding dehydrogenase AYJ57_05970 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AYJ57_05975 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_05980 PF00561 alpha/beta hydrolase fold AYJ57_05985 PF01509 TruB family pseudouridylate synthase (N terminal domain) AYJ57_05985 PF16198 tRNA pseudouridylate synthase B C-terminal domain AYJ57_05990 PF00561 alpha/beta hydrolase fold AYJ57_06000 PF10397 Adenylosuccinate lyase C-terminus AYJ57_06000 PF00206 Lyase AYJ57_06005 PF01022 Bacterial regulatory protein, arsR family AYJ57_06010 PF13193 AMP-binding enzyme C-terminal domain AYJ57_06010 PF00501 AMP-binding enzyme AYJ57_06015 PF00005 ABC transporter AYJ57_06015 PF00664 ABC transporter transmembrane region AYJ57_06030 PF00106 short chain dehydrogenase AYJ57_06035 PF12973 ChrR Cupin-like domain AYJ57_06040 PF04542 Sigma-70 region 2 AYJ57_06040 PF04545 Sigma-70, region 4 AYJ57_06065 PF02586 SOS response associated peptidase (SRAP) AYJ57_06070 PF00849 RNA pseudouridylate synthase AYJ57_06075 PF14437 MafB19-like deaminase AYJ57_06080 PF01479 S4 domain AYJ57_06080 PF00849 RNA pseudouridylate synthase AYJ57_06100 PF05816 Toxic anion resistance protein (TelA) AYJ57_06125 PF00294 pfkB family carbohydrate kinase AYJ57_06130 PF02580 D-Tyr-tRNA(Tyr) deacylase AYJ57_06150 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_06155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ57_06155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_06165 PF00468 Ribosomal protein L34 AYJ57_06170 PF00825 Ribonuclease P AYJ57_06175 PF01809 Putative membrane protein insertion efficiency factor AYJ57_06180 PF01171 PP-loop family AYJ57_06185 PF00990 Diguanylate cyclase, GGDEF domain AYJ57_06185 PF03707 Bacterial signalling protein N terminal repeat AYJ57_06185 PF00563 EAL domain AYJ57_06190 PF14849 YidC periplasmic domain AYJ57_06190 PF02096 60Kd inner membrane protein AYJ57_06200 PF01926 50S ribosome-binding GTPase AYJ57_06205 PF00696 Amino acid kinase family AYJ57_06220 PF00005 ABC transporter AYJ57_06225 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06230 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06235 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_06245 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_06250 PF01479 S4 domain AYJ57_06250 PF00849 RNA pseudouridylate synthase AYJ57_06255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYJ57_06260 PF12002 MgsA AAA+ ATPase C terminal AYJ57_06260 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_06260 PF16193 AAA C-terminal domain AYJ57_06265 PF13180 PDZ domain AYJ57_06285 PF04055 Radical SAM superfamily AYJ57_06295 PF00403 Heavy-metal-associated domain AYJ57_06300 PF09278 MerR, DNA binding AYJ57_06300 PF00376 MerR family regulatory protein AYJ57_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_06305 PF01627 Hpt domain AYJ57_06305 PF00072 Response regulator receiver domain AYJ57_06305 PF17149 Periplasmic sensor domain found in signal transduction proteins AYJ57_06305 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_06305 PF00672 HAMP domain AYJ57_06315 PF00196 Bacterial regulatory proteins, luxR family AYJ57_06315 PF00072 Response regulator receiver domain AYJ57_06320 PF01544 CorA-like Mg2+ transporter protein AYJ57_06335 PF03143 Elongation factor Tu C-terminal domain AYJ57_06335 PF03144 Elongation factor Tu domain 2 AYJ57_06335 PF00009 Elongation factor Tu GTP binding domain AYJ57_06345 PF00067 Cytochrome P450 AYJ57_06350 PF01923 Cobalamin adenosyltransferase AYJ57_06360 PF00106 short chain dehydrogenase AYJ57_06370 PF03989 DNA gyrase C-terminal domain, beta-propeller AYJ57_06370 PF00521 DNA gyrase/topoisomerase IV, subunit A AYJ57_06375 PF01012 Electron transfer flavoprotein domain AYJ57_06380 PF00766 Electron transfer flavoprotein FAD-binding domain AYJ57_06380 PF01012 Electron transfer flavoprotein domain AYJ57_06395 PF00005 ABC transporter AYJ57_06400 PF16861 Carbamoyltransferase C-terminus AYJ57_06400 PF02543 Carbamoyltransferase N-terminus AYJ57_06405 PF01522 Polysaccharide deacetylase AYJ57_06410 PF03167 Uracil DNA glycosylase superfamily AYJ57_06420 PF03576 Peptidase family S58 AYJ57_06430 PF00171 Aldehyde dehydrogenase family AYJ57_06435 PF00005 ABC transporter AYJ57_06435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_06445 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06450 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AYJ57_06450 PF09297 NADH pyrophosphatase zinc ribbon domain AYJ57_06450 PF00293 NUDIX domain AYJ57_06455 PF07969 Amidohydrolase family AYJ57_06460 PF02222 ATP-grasp domain AYJ57_06460 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AYJ57_06465 PF00731 AIR carboxylase AYJ57_06470 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AYJ57_06470 PF00056 lactate/malate dehydrogenase, NAD binding domain AYJ57_06485 PF01293 Phosphoenolpyruvate carboxykinase AYJ57_06490 PF00072 Response regulator receiver domain AYJ57_06490 PF00486 Transcriptional regulatory protein, C terminal AYJ57_06495 PF00672 HAMP domain AYJ57_06495 PF13756 Stimulus-sensing domain AYJ57_06495 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_06495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_06495 PF13755 Sensor N-terminal transmembrane domain AYJ57_06500 PF07475 HPr Serine kinase C-terminal domain AYJ57_06500 PF02603 HPr Serine kinase N terminus AYJ57_06505 PF03668 P-loop ATPase protein family AYJ57_06515 PF00381 PTS HPr component phosphorylation site AYJ57_06525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_06525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_06535 PF00561 alpha/beta hydrolase fold AYJ57_06535 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AYJ57_06545 PF00202 Aminotransferase class-III AYJ57_06550 PF00795 Carbon-nitrogen hydrolase AYJ57_06555 PF13416 Bacterial extracellular solute-binding protein AYJ57_06560 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06565 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06570 PF00005 ABC transporter AYJ57_06570 PF08402 TOBE domain AYJ57_06585 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AYJ57_06585 PF00355 Rieske [2Fe-2S] domain AYJ57_06600 PF00224 Pyruvate kinase, barrel domain AYJ57_06600 PF02887 Pyruvate kinase, alpha/beta domain AYJ57_06610 PF01632 Ribosomal protein L35 AYJ57_06615 PF00453 Ribosomal protein L20 AYJ57_06620 PF01409 tRNA synthetases class II core domain (F) AYJ57_06620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AYJ57_06640 PF09334 tRNA synthetases class I (M) AYJ57_06640 PF13603 Leucyl-tRNA synthetase, Domain 2 AYJ57_06640 PF00133 tRNA synthetases class I (I, L, M and V) AYJ57_06640 PF08264 Anticodon-binding domain of tRNA AYJ57_06645 PF13439 Glycosyltransferase Family 4 AYJ57_06645 PF00534 Glycosyl transferases group 1 AYJ57_06650 PF12100 Domain of unknown function (DUF3576) AYJ57_06660 PF13181 Tetratricopeptide repeat AYJ57_06665 PF01168 Alanine racemase, N-terminal domain AYJ57_06670 PF00155 Aminotransferase class I and II AYJ57_06670 PF00392 Bacterial regulatory proteins, gntR family AYJ57_06675 PF01687 Riboflavin kinase AYJ57_06675 PF06574 FAD synthetase AYJ57_06680 PF03692 Putative zinc- or iron-chelating domain AYJ57_06685 PF01212 Beta-eliminating lyase AYJ57_06705 PF01580 FtsK/SpoIIIE family AYJ57_06705 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AYJ57_06705 PF09397 Ftsk gamma domain AYJ57_06705 PF17854 FtsK alpha domain AYJ57_06710 PF00155 Aminotransferase class I and II AYJ57_06720 PF01546 Peptidase family M20/M25/M40 AYJ57_06720 PF07687 Peptidase dimerisation domain AYJ57_06730 PF00773 RNB domain AYJ57_06730 PF00575 S1 RNA binding domain AYJ57_06730 PF17876 Cold shock domain AYJ57_06730 PF08461 Ribonuclease R winged-helix domain AYJ57_06730 PF08206 Ribonuclease B OB domain AYJ57_06735 PF13406 Transglycosylase SLT domain AYJ57_06745 PF00293 NUDIX domain AYJ57_06750 PF13180 PDZ domain AYJ57_06750 PF03572 Peptidase family S41 AYJ57_06760 PF01676 Metalloenzyme superfamily AYJ57_06760 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AYJ57_06765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_06775 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_06805 PF02594 Uncharacterised ACR, YggU family COG1872 AYJ57_06810 PF00881 Nitroreductase family AYJ57_06830 PF00072 Response regulator receiver domain AYJ57_06830 PF00486 Transcriptional regulatory protein, C terminal AYJ57_06860 PF01336 OB-fold nucleic acid binding domain AYJ57_06860 PF02938 GAD domain AYJ57_06860 PF00152 tRNA synthetases class II (D, K and N) AYJ57_06870 PF02142 MGS-like domain AYJ57_06870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AYJ57_06870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ57_06875 PF00005 ABC transporter AYJ57_06880 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_06880 PF00005 ABC transporter AYJ57_06885 PF02653 Branched-chain amino acid transport system / permease component AYJ57_06885 PF11862 Domain of unknown function (DUF3382) AYJ57_06890 PF02653 Branched-chain amino acid transport system / permease component AYJ57_06910 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_06915 PF00005 ABC transporter AYJ57_06915 PF03459 TOBE domain AYJ57_06950 PF01039 Carboxyl transferase domain AYJ57_06950 PF17848 Acetyl-coA carboxylase zinc finger domain AYJ57_06955 PF02875 Mur ligase family, glutamate ligase domain AYJ57_06955 PF08245 Mur ligase middle domain AYJ57_06960 PF03969 AFG1-like ATPase AYJ57_06965 PF07690 Major Facilitator Superfamily AYJ57_06970 PF08241 Methyltransferase domain AYJ57_06970 PF12697 Alpha/beta hydrolase family AYJ57_06980 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AYJ57_06985 PF00756 Putative esterase AYJ57_07000 PF00005 ABC transporter AYJ57_07005 PF01230 HIT domain AYJ57_07035 PF07726 ATPase family associated with various cellular activities (AAA) AYJ57_07035 PF17863 AAA lid domain AYJ57_07070 PF01565 FAD binding domain AYJ57_07070 PF02913 FAD linked oxidases, C-terminal domain AYJ57_07075 PF01565 FAD binding domain AYJ57_07080 PF13183 4Fe-4S dicluster domain AYJ57_07080 PF02754 Cysteine-rich domain AYJ57_07085 PF00089 Trypsin AYJ57_07095 PF00011 Hsp20/alpha crystallin family AYJ57_07105 PF00550 Phosphopantetheine attachment site AYJ57_07105 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_07105 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_07105 PF00698 Acyl transferase domain AYJ57_07105 PF14765 Polyketide synthase dehydratase AYJ57_07105 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_07105 PF16197 Ketoacyl-synthetase C-terminal extension AYJ57_07105 PF08659 KR domain AYJ57_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_07110 PF03466 LysR substrate binding domain AYJ57_07130 PF00171 Aldehyde dehydrogenase family AYJ57_07135 PF01321 Creatinase/Prolidase N-terminal domain AYJ57_07135 PF00557 Metallopeptidase family M24 AYJ57_07140 PF07509 Protein of unknown function (DUF1523) AYJ57_07145 PF05656 Protein of unknown function (DUF805) AYJ57_07160 PF12800 4Fe-4S binding domain AYJ57_07160 PF13247 4Fe-4S dicluster domain AYJ57_07165 PF01568 Molydopterin dinucleotide binding domain AYJ57_07165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYJ57_07165 PF00384 Molybdopterin oxidoreductase AYJ57_07180 PF13439 Glycosyltransferase Family 4 AYJ57_07180 PF00534 Glycosyl transferases group 1 AYJ57_07190 PF01757 Acyltransferase family AYJ57_07195 PF00732 GMC oxidoreductase AYJ57_07195 PF05199 GMC oxidoreductase AYJ57_07200 PF00106 short chain dehydrogenase AYJ57_07210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_07210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_07220 PF00534 Glycosyl transferases group 1 AYJ57_07220 PF13439 Glycosyltransferase Family 4 AYJ57_07225 PF00535 Glycosyl transferase family 2 AYJ57_07230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_07230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_07235 PF13614 AAA domain AYJ57_07245 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AYJ57_07245 PF01648 4'-phosphopantetheinyl transferase superfamily AYJ57_07250 PF00668 Condensation domain AYJ57_07250 PF00501 AMP-binding enzyme AYJ57_07250 PF13193 AMP-binding enzyme C-terminal domain AYJ57_07250 PF00550 Phosphopantetheine attachment site AYJ57_07260 PF00668 Condensation domain AYJ57_07260 PF16197 Ketoacyl-synthetase C-terminal extension AYJ57_07260 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_07260 PF00698 Acyl transferase domain AYJ57_07260 PF00550 Phosphopantetheine attachment site AYJ57_07260 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_07275 PF13439 Glycosyltransferase Family 4 AYJ57_07275 PF00534 Glycosyl transferases group 1 AYJ57_07285 PF08502 LeuA allosteric (dimerisation) domain AYJ57_07285 PF00682 HMGL-like AYJ57_07295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_07295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_07300 PF04321 RmlD substrate binding domain AYJ57_07315 PF01380 SIS domain AYJ57_07315 PF00571 CBS domain AYJ57_07320 PF04172 LrgB-like family AYJ57_07325 PF03788 LrgA family AYJ57_07350 PF00814 Glycoprotease family AYJ57_07355 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AYJ57_07355 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AYJ57_07385 PF01235 Sodium:alanine symporter family AYJ57_07395 PF05221 S-adenosyl-L-homocysteine hydrolase AYJ57_07395 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AYJ57_07405 PF01966 HD domain AYJ57_07425 PF02630 SCO1/SenC AYJ57_07430 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_07430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_07440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AYJ57_07445 PF01636 Phosphotransferase enzyme family AYJ57_07450 PF12804 MobA-like NTP transferase domain AYJ57_07455 PF12705 PD-(D/E)XK nuclease superfamily AYJ57_07460 PF13361 UvrD-like helicase C-terminal domain AYJ57_07460 PF12705 PD-(D/E)XK nuclease superfamily AYJ57_07460 PF00580 UvrD/REP helicase N-terminal domain AYJ57_07465 PF00085 Thioredoxin AYJ57_07475 PF00227 Proteasome subunit AYJ57_07480 PF07724 AAA domain (Cdc48 subfamily) AYJ57_07495 PF00561 alpha/beta hydrolase fold AYJ57_07505 PF00375 Sodium:dicarboxylate symporter family AYJ57_07515 PF00462 Glutaredoxin AYJ57_07520 PF00156 Phosphoribosyl transferase domain AYJ57_07530 PF00762 Ferrochelatase AYJ57_07540 PF03734 L,D-transpeptidase catalytic domain AYJ57_07555 PF03734 L,D-transpeptidase catalytic domain AYJ57_07560 PF05958 tRNA (Uracil-5-)-methyltransferase AYJ57_07565 PF00664 ABC transporter transmembrane region AYJ57_07565 PF00005 ABC transporter AYJ57_07570 PF00664 ABC transporter transmembrane region AYJ57_07570 PF00005 ABC transporter AYJ57_07580 PF12627 Probable RNA and SrmB- binding site of polymerase A AYJ57_07580 PF01743 Poly A polymerase head domain AYJ57_07585 PF00293 NUDIX domain AYJ57_07590 PF01430 Hsp33 protein AYJ57_07595 PF00293 NUDIX domain AYJ57_07600 PF00072 Response regulator receiver domain AYJ57_07600 PF00486 Transcriptional regulatory protein, C terminal AYJ57_07610 PF00585 C-terminal regulatory domain of Threonine dehydratase AYJ57_07610 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_07620 PF00764 Arginosuccinate synthase AYJ57_07635 PF01063 Amino-transferase class IV AYJ57_07640 PF01625 Peptide methionine sulfoxide reductase AYJ57_07645 PF00294 pfkB family carbohydrate kinase AYJ57_07650 PF03949 Malic enzyme, NAD binding domain AYJ57_07650 PF01515 Phosphate acetyl/butaryl transferase AYJ57_07650 PF00390 Malic enzyme, N-terminal domain AYJ57_07655 PF01624 MutS domain I AYJ57_07655 PF05192 MutS domain III AYJ57_07655 PF00488 MutS domain V AYJ57_07655 PF05190 MutS family domain IV AYJ57_07655 PF05188 MutS domain II AYJ57_07660 PF01025 GrpE AYJ57_07665 PF01628 HrcA protein C terminal domain AYJ57_07670 PF03725 3' exoribonuclease family, domain 2 AYJ57_07670 PF01138 3' exoribonuclease family, domain 1 AYJ57_07675 PF01725 Ham1 family AYJ57_07680 PF04055 Radical SAM superfamily AYJ57_07680 PF06969 HemN C-terminal domain AYJ57_07685 PF17762 HTH domain found in ParB protein AYJ57_07685 PF02195 ParB-like nuclease domain AYJ57_07690 PF13614 AAA domain AYJ57_07695 PF02527 rRNA small subunit methyltransferase G AYJ57_07700 PF13932 GidA associated domain AYJ57_07700 PF01134 Glucose inhibited division protein A AYJ57_07705 PF10396 GTP-binding protein TrmE N-terminus AYJ57_07705 PF01926 50S ribosome-binding GTPase AYJ57_07705 PF12631 MnmE helical domain AYJ57_07710 PF07497 Rho termination factor, RNA-binding domain AYJ57_07710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_07710 PF07498 Rho termination factor, N-terminal domain AYJ57_07715 PF02545 Maf-like protein AYJ57_07720 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYJ57_07720 PF08501 Shikimate dehydrogenase substrate binding domain AYJ57_07720 PF01488 Shikimate / quinate 5-dehydrogenase AYJ57_07725 PF01121 Dephospho-CoA kinase AYJ57_07730 PF00929 Exonuclease AYJ57_07735 PF02556 Preprotein translocase subunit SecB AYJ57_07740 PF04186 FxsA cytoplasmic membrane protein AYJ57_07760 PF00293 NUDIX domain AYJ57_07770 PF02563 Polysaccharide biosynthesis/export protein AYJ57_07770 PF10531 SLBB domain AYJ57_07770 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AYJ57_07775 PF02397 Bacterial sugar transferase AYJ57_07785 PF06082 Exopolysaccharide biosynthesis protein YbjH AYJ57_07790 PF00691 OmpA family AYJ57_07790 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ57_07820 PF03109 ABC1 family AYJ57_07825 PF01209 ubiE/COQ5 methyltransferase family AYJ57_07830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AYJ57_07830 PF06827 Zinc finger found in FPG and IleRS AYJ57_07830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AYJ57_07835 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_07845 PF01649 Ribosomal protein S20 AYJ57_07850 PF11638 DnaA N-terminal domain AYJ57_07850 PF08299 Bacterial dnaA protein helix-turn-helix AYJ57_07850 PF00308 Bacterial dnaA protein AYJ57_07855 PF02768 DNA polymerase III beta subunit, C-terminal domain AYJ57_07855 PF02767 DNA polymerase III beta subunit, central domain AYJ57_07855 PF00712 DNA polymerase III beta subunit, N-terminal domain AYJ57_07860 PF02463 RecF/RecN/SMC N terminal domain AYJ57_07865 PF00204 DNA gyrase B AYJ57_07865 PF01751 Toprim domain AYJ57_07865 PF00986 DNA gyrase B subunit, carboxyl terminus AYJ57_07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_07875 PF04321 RmlD substrate binding domain AYJ57_07915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_07920 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_07925 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_07925 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_07930 PF00005 ABC transporter AYJ57_07930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_07935 PF16925 Tetracyclin repressor-like, C-terminal domain AYJ57_07935 PF00440 Bacterial regulatory proteins, tetR family AYJ57_07940 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_07940 PF00107 Zinc-binding dehydrogenase AYJ57_07950 PF00892 EamA-like transporter family AYJ57_07955 PF00180 Isocitrate/isopropylmalate dehydrogenase AYJ57_07970 PF01144 Coenzyme A transferase AYJ57_07975 PF01144 Coenzyme A transferase AYJ57_07980 PF00694 Aconitase C-terminal domain AYJ57_07985 PF00330 Aconitase family (aconitate hydratase) AYJ57_07995 PF00108 Thiolase, N-terminal domain AYJ57_07995 PF02803 Thiolase, C-terminal domain AYJ57_08005 PF00672 HAMP domain AYJ57_08005 PF00072 Response regulator receiver domain AYJ57_08005 PF01627 Hpt domain AYJ57_08005 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_08005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_08005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYJ57_08010 PF03883 Peroxide stress protein YaaA AYJ57_08015 PF00270 DEAD/DEAH box helicase AYJ57_08015 PF09382 RQC domain AYJ57_08015 PF00271 Helicase conserved C-terminal domain AYJ57_08015 PF00570 HRDC domain AYJ57_08015 PF16124 RecQ zinc-binding AYJ57_08020 PF00472 RF-1 domain AYJ57_08025 PF02592 Putative vitamin uptake transporter AYJ57_08035 PF03411 Penicillin-insensitive murein endopeptidase AYJ57_08060 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYJ57_08060 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AYJ57_08080 PF00206 Lyase AYJ57_08080 PF14698 Argininosuccinate lyase C-terminal AYJ57_08085 PF08534 Redoxin AYJ57_08100 PF02153 Prephenate dehydrogenase AYJ57_08105 PF00155 Aminotransferase class I and II AYJ57_08110 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYJ57_08110 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYJ57_08115 PF00857 Isochorismatase family AYJ57_08125 PF00813 FliP family AYJ57_08130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AYJ57_08140 PF08345 Flagellar M-ring protein C-terminal AYJ57_08140 PF01514 Secretory protein of YscJ/FliF family AYJ57_08160 PF00085 Thioredoxin AYJ57_08165 PF03734 L,D-transpeptidase catalytic domain AYJ57_08165 PF17969 L,D-transpeptidase C-terminal domain AYJ57_08180 PF00005 ABC transporter AYJ57_08190 PF00459 Inositol monophosphatase family AYJ57_08195 PF02347 Glycine cleavage system P-protein AYJ57_08200 PF01597 Glycine cleavage H-protein AYJ57_08205 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_08205 PF01571 Aminomethyltransferase folate-binding domain AYJ57_08210 PF02082 Transcriptional regulator AYJ57_08220 PF10011 Predicted membrane protein (DUF2254) AYJ57_08225 PF00749 tRNA synthetases class I (E and Q), catalytic domain AYJ57_08230 PF00294 pfkB family carbohydrate kinase AYJ57_08250 PF18331 PKHD-type hydroxylase C-terminal domain AYJ57_08250 PF13640 2OG-Fe(II) oxygenase superfamily AYJ57_08260 PF00795 Carbon-nitrogen hydrolase AYJ57_08260 PF02540 NAD synthase AYJ57_08275 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AYJ57_08295 PF08402 TOBE domain AYJ57_08295 PF00005 ABC transporter AYJ57_08305 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_08315 PF01177 Asp/Glu/Hydantoin racemase AYJ57_08320 PF10414 Sirohaem synthase dimerisation region AYJ57_08320 PF14824 Sirohaem biosynthesis protein central AYJ57_08320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AYJ57_08325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYJ57_08325 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_08325 PF01568 Molydopterin dinucleotide binding domain AYJ57_08325 PF00384 Molybdopterin oxidoreductase AYJ57_08330 PF00355 Rieske [2Fe-2S] domain AYJ57_08335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYJ57_08335 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_08335 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_08335 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYJ57_08335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYJ57_08340 PF00005 ABC transporter AYJ57_08345 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_08355 PF00005 ABC transporter AYJ57_08360 PF03861 ANTAR domain AYJ57_08360 PF08376 Nitrate and nitrite sensing AYJ57_08365 PF00202 Aminotransferase class-III AYJ57_08370 PF00392 Bacterial regulatory proteins, gntR family AYJ57_08370 PF07729 FCD domain AYJ57_08375 PF13416 Bacterial extracellular solute-binding protein AYJ57_08380 PF08402 TOBE domain AYJ57_08380 PF00005 ABC transporter AYJ57_08385 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_08390 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_08395 PF01266 FAD dependent oxidoreductase AYJ57_08400 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYJ57_08400 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYJ57_08405 PF00909 Ammonium Transporter Family AYJ57_08410 PF00543 Nitrogen regulatory protein P-II AYJ57_08415 PF00905 Penicillin binding protein transpeptidase domain AYJ57_08415 PF00912 Transglycosylase AYJ57_08420 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AYJ57_08425 PF00579 tRNA synthetases class I (W and Y) AYJ57_08435 PF01145 SPFH domain / Band 7 family AYJ57_08445 PF00293 NUDIX domain AYJ57_08450 PF00817 impB/mucB/samB family AYJ57_08450 PF11799 impB/mucB/samB family C-terminal domain AYJ57_08465 PF02646 RmuC family AYJ57_08470 PF08676 MutL C terminal dimerisation domain AYJ57_08470 PF01119 DNA mismatch repair protein, C-terminal domain AYJ57_08480 PF13811 Domain of unknown function (DUF4186) AYJ57_08490 PF12833 Helix-turn-helix domain AYJ57_08490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYJ57_08490 PF02805 Metal binding domain of Ada AYJ57_08490 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYJ57_08495 PF00581 Rhodanese-like domain AYJ57_08500 PF07729 FCD domain AYJ57_08500 PF00392 Bacterial regulatory proteins, gntR family AYJ57_08505 PF02391 MoaE protein AYJ57_08515 PF01066 CDP-alcohol phosphatidyltransferase AYJ57_08520 PF11967 Recombination protein O N terminal AYJ57_08520 PF02565 Recombination protein O C terminal AYJ57_08535 PF07650 KH domain AYJ57_08535 PF01926 50S ribosome-binding GTPase AYJ57_08540 PF00892 EamA-like transporter family AYJ57_08545 PF14622 Ribonuclease-III-like AYJ57_08545 PF00035 Double-stranded RNA binding motif AYJ57_08550 PF10502 Signal peptidase, peptidase S26 AYJ57_08555 PF01648 4'-phosphopantetheinyl transferase superfamily AYJ57_08560 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AYJ57_08570 PF04607 Region found in RelA / SpoT proteins AYJ57_08570 PF13291 ACT domain AYJ57_08570 PF02824 TGS domain AYJ57_08575 PF01192 RNA polymerase Rpb6 AYJ57_08580 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AYJ57_08595 PF02401 LytB protein AYJ57_08615 PF00075 RNase H AYJ57_08620 PF03458 UPF0126 domain AYJ57_08625 PF00155 Aminotransferase class I and II AYJ57_08630 PF01327 Polypeptide deformylase AYJ57_08635 PF01327 Polypeptide deformylase AYJ57_08640 PF01327 Polypeptide deformylase AYJ57_08645 PF00551 Formyl transferase AYJ57_08645 PF02911 Formyl transferase, C-terminal domain AYJ57_08655 PF13409 Glutathione S-transferase, N-terminal domain AYJ57_08675 PF01425 Amidase AYJ57_08680 PF01494 FAD binding domain AYJ57_08690 PF00106 short chain dehydrogenase AYJ57_08695 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_08700 PF00672 HAMP domain AYJ57_08700 PF02203 Tar ligand binding domain homologue AYJ57_08700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AYJ57_08705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYJ57_08710 PF01979 Amidohydrolase family AYJ57_08710 PF13382 Adenine deaminase C-terminal domain AYJ57_08730 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_08730 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AYJ57_08730 PF14602 Hexapeptide repeat of succinyl-transferase AYJ57_08740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_08750 PF00732 GMC oxidoreductase AYJ57_08750 PF05199 GMC oxidoreductase AYJ57_08755 PF00585 C-terminal regulatory domain of Threonine dehydratase AYJ57_08755 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_08765 PF02719 Polysaccharide biosynthesis protein AYJ57_08770 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYJ57_08770 PF02774 Semialdehyde dehydrogenase, dimerisation domain AYJ57_08780 PF00484 Carbonic anhydrase AYJ57_08790 PF00883 Cytosol aminopeptidase family, catalytic domain AYJ57_08790 PF02789 Cytosol aminopeptidase family, N-terminal domain AYJ57_08795 PF00877 NlpC/P60 family AYJ57_08800 PF00491 Arginase family AYJ57_08810 PF01966 HD domain AYJ57_08815 PF00266 Aminotransferase class-V AYJ57_08820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_08820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_08820 PF01842 ACT domain AYJ57_08825 PF00149 Calcineurin-like phosphoesterase AYJ57_08830 PF00916 Sulfate permease family AYJ57_08830 PF01740 STAS domain AYJ57_08840 PF01197 Ribosomal protein L31 AYJ57_08845 PF01245 Ribosomal protein L19 AYJ57_08850 PF01746 tRNA (Guanine-1)-methyltransferase AYJ57_08860 PF01782 RimM N-terminal domain AYJ57_08860 PF05239 PRC-barrel domain AYJ57_08870 PF00886 Ribosomal protein S16 AYJ57_08900 PF02978 Signal peptide binding domain AYJ57_08900 PF00448 SRP54-type protein, GTPase domain AYJ57_08900 PF02881 SRP54-type protein, helical bundle domain AYJ57_08925 PF00119 ATP synthase A chain AYJ57_08930 PF00137 ATP synthase subunit C AYJ57_08935 PF00430 ATP synthase B/B' CF(0) AYJ57_08940 PF00430 ATP synthase B/B' CF(0) AYJ57_08945 PF10609 NUBPL iron-transfer P-loop NTPase AYJ57_08945 PF01883 Iron-sulfur cluster assembly protein AYJ57_08965 PF02463 RecF/RecN/SMC N terminal domain AYJ57_08970 PF02569 Pantoate-beta-alanine ligase AYJ57_08975 PF02548 Ketopantoate hydroxymethyltransferase AYJ57_08980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_08985 PF07687 Peptidase dimerisation domain AYJ57_08985 PF01546 Peptidase family M20/M25/M40 AYJ57_08995 PF04752 ChaC-like protein AYJ57_09005 PF00691 OmpA family AYJ57_09005 PF01389 OmpA-like transmembrane domain AYJ57_09015 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ57_09015 PF02861 Clp amino terminal domain, pathogenicity island component AYJ57_09015 PF17871 AAA lid domain AYJ57_09015 PF07724 AAA domain (Cdc48 subfamily) AYJ57_09015 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_09020 PF00753 Metallo-beta-lactamase superfamily AYJ57_09020 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYJ57_09025 PF08241 Methyltransferase domain AYJ57_09030 PF00213 ATP synthase delta (OSCP) subunit AYJ57_09035 PF00306 ATP synthase alpha/beta chain, C terminal domain AYJ57_09035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_09035 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ57_09040 PF00231 ATP synthase AYJ57_09045 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ57_09045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_09050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYJ57_09065 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AYJ57_09065 PF14572 Phosphoribosyl synthetase-associated domain AYJ57_09075 PF02660 Glycerol-3-phosphate acyltransferase AYJ57_09080 PF01979 Amidohydrolase family AYJ57_09090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYJ57_09090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYJ57_09100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_09100 PF14759 Reductase C-terminal AYJ57_09105 PF08534 Redoxin AYJ57_09110 PF01329 Pterin 4 alpha carbinolamine dehydratase AYJ57_09120 PF03009 Glycerophosphoryl diester phosphodiesterase family AYJ57_09130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_09130 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_09135 PF00664 ABC transporter transmembrane region AYJ57_09135 PF00005 ABC transporter AYJ57_09140 PF04333 MlaA lipoprotein AYJ57_09155 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_09155 PF10431 C-terminal, D2-small domain, of ClpB protein AYJ57_09155 PF02861 Clp amino terminal domain, pathogenicity island component AYJ57_09155 PF17871 AAA lid domain AYJ57_09155 PF07724 AAA domain (Cdc48 subfamily) AYJ57_09160 PF02469 Fasciclin domain AYJ57_09165 PF01645 Conserved region in glutamate synthase AYJ57_09170 PF00174 Oxidoreductase molybdopterin binding domain AYJ57_09175 PF01794 Ferric reductase like transmembrane component AYJ57_09210 PF00128 Alpha amylase, catalytic domain AYJ57_09210 PF02806 Alpha amylase, C-terminal all-beta domain AYJ57_09210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ57_09250 PF02357 Transcription termination factor nusG AYJ57_09250 PF00467 KOW motif AYJ57_09255 PF00298 Ribosomal protein L11, RNA binding domain AYJ57_09255 PF03946 Ribosomal protein L11, N-terminal domain AYJ57_09260 PF00687 Ribosomal protein L1p/L10e family AYJ57_09265 PF00466 Ribosomal protein L10 AYJ57_09270 PF00542 Ribosomal protein L7/L12 C-terminal domain AYJ57_09270 PF16320 Ribosomal protein L7/L12 dimerisation domain AYJ57_09275 PF04560 RNA polymerase Rpb2, domain 7 AYJ57_09275 PF00562 RNA polymerase Rpb2, domain 6 AYJ57_09275 PF10385 RNA polymerase beta subunit external 1 domain AYJ57_09275 PF04563 RNA polymerase beta subunit AYJ57_09275 PF04565 RNA polymerase Rpb2, domain 3 AYJ57_09275 PF04561 RNA polymerase Rpb2, domain 2 AYJ57_09280 PF04983 RNA polymerase Rpb1, domain 3 AYJ57_09280 PF00623 RNA polymerase Rpb1, domain 2 AYJ57_09280 PF04997 RNA polymerase Rpb1, domain 1 AYJ57_09280 PF04998 RNA polymerase Rpb1, domain 5 AYJ57_09280 PF05000 RNA polymerase Rpb1, domain 4 AYJ57_09295 PF00164 Ribosomal protein S12/S23 AYJ57_09300 PF00177 Ribosomal protein S7p/S5e AYJ57_09305 PF00009 Elongation factor Tu GTP binding domain AYJ57_09305 PF03764 Elongation factor G, domain IV AYJ57_09305 PF14492 Elongation Factor G, domain II AYJ57_09305 PF03144 Elongation factor Tu domain 2 AYJ57_09305 PF00679 Elongation factor G C-terminus AYJ57_09310 PF03143 Elongation factor Tu C-terminal domain AYJ57_09310 PF03144 Elongation factor Tu domain 2 AYJ57_09310 PF00009 Elongation factor Tu GTP binding domain AYJ57_09315 PF00338 Ribosomal protein S10p/S20e AYJ57_09320 PF00297 Ribosomal protein L3 AYJ57_09325 PF00573 Ribosomal protein L4/L1 family AYJ57_09330 PF00276 Ribosomal protein L23 AYJ57_09335 PF03947 Ribosomal Proteins L2, C-terminal domain AYJ57_09335 PF00181 Ribosomal Proteins L2, RNA binding domain AYJ57_09340 PF00203 Ribosomal protein S19 AYJ57_09345 PF00237 Ribosomal protein L22p/L17e AYJ57_09350 PF07650 KH domain AYJ57_09350 PF00189 Ribosomal protein S3, C-terminal domain AYJ57_09355 PF00252 Ribosomal protein L16p/L10e AYJ57_09365 PF00831 Ribosomal L29 protein AYJ57_09370 PF00366 Ribosomal protein S17 AYJ57_09375 PF00238 Ribosomal protein L14p/L23e AYJ57_09380 PF00467 KOW motif AYJ57_09380 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AYJ57_09385 PF00281 Ribosomal protein L5 AYJ57_09385 PF00673 ribosomal L5P family C-terminus AYJ57_09390 PF00253 Ribosomal protein S14p/S29e AYJ57_09395 PF00410 Ribosomal protein S8 AYJ57_09400 PF00347 Ribosomal protein L6 AYJ57_09405 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AYJ57_09410 PF00333 Ribosomal protein S5, N-terminal domain AYJ57_09410 PF03719 Ribosomal protein S5, C-terminal domain AYJ57_09415 PF00327 Ribosomal protein L30p/L7e AYJ57_09420 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AYJ57_09425 PF00344 SecY translocase AYJ57_09430 PF05191 Adenylate kinase, active site lid AYJ57_09440 PF00416 Ribosomal protein S13/S18 AYJ57_09445 PF00411 Ribosomal protein S11 AYJ57_09450 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AYJ57_09450 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AYJ57_09450 PF01000 RNA polymerase Rpb3/RpoA insert domain AYJ57_09455 PF01196 Ribosomal protein L17 AYJ57_09460 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_09460 PF00107 Zinc-binding dehydrogenase AYJ57_09465 PF07885 Ion channel AYJ57_09480 PF00440 Bacterial regulatory proteins, tetR family AYJ57_09490 PF00476 DNA polymerase family A AYJ57_09490 PF01612 3'-5' exonuclease AYJ57_09490 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AYJ57_09490 PF01367 5'-3' exonuclease, C-terminal SAM fold AYJ57_09495 PF00294 pfkB family carbohydrate kinase AYJ57_09500 PF00730 HhH-GPD superfamily base excision DNA repair protein AYJ57_09500 PF00633 Helix-hairpin-helix motif AYJ57_09500 PF10576 Iron-sulfur binding domain of endonuclease III AYJ57_09505 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AYJ57_09505 PF12833 Helix-turn-helix domain AYJ57_09505 PF02805 Metal binding domain of Ada AYJ57_09505 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AYJ57_09510 PF00691 OmpA family AYJ57_09510 PF00223 Photosystem I psaA/psaB protein AYJ57_09515 PF02397 Bacterial sugar transferase AYJ57_09520 PF01612 3'-5' exonuclease AYJ57_09520 PF00570 HRDC domain AYJ57_09530 PF03968 OstA-like protein AYJ57_09530 PF04453 LPS transport system D AYJ57_09535 PF00005 ABC transporter AYJ57_09540 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AYJ57_09540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AYJ57_09545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AYJ57_09570 PF16363 GDP-mannose 4,6 dehydratase AYJ57_09575 PF00483 Nucleotidyl transferase AYJ57_09585 PF00459 Inositol monophosphatase family AYJ57_09600 PF13532 2OG-Fe(II) oxygenase superfamily AYJ57_09605 PF00012 Hsp70 protein AYJ57_09610 PF00226 DnaJ domain AYJ57_09610 PF01556 DnaJ C terminal domain AYJ57_09610 PF00684 DnaJ central domain AYJ57_09615 PF04002 RadC-like JAB domain AYJ57_09630 PF01043 SecA preprotein cross-linking domain AYJ57_09630 PF02810 SEC-C motif AYJ57_09630 PF07517 SecA DEAD-like domain AYJ57_09630 PF07516 SecA Wing and Scaffold domain AYJ57_09640 PF01960 ArgJ family AYJ57_09645 PF00293 NUDIX domain AYJ57_09650 PF00009 Elongation factor Tu GTP binding domain AYJ57_09650 PF04760 Translation initiation factor IF-2, N-terminal region AYJ57_09650 PF11987 Translation-initiation factor 2 AYJ57_09650 PF08364 Bacterial translation initiation factor IF-2 associated region AYJ57_09660 PF00575 S1 RNA binding domain AYJ57_09660 PF08529 NusA N-terminal domain AYJ57_09660 PF13184 NusA-like KH domain AYJ57_09665 PF02576 RimP N-terminal domain AYJ57_09665 PF17384 RimP C-terminal SH3 domain AYJ57_09680 PF01047 MarR family AYJ57_09690 PF08544 GHMP kinases C terminal AYJ57_09690 PF00288 GHMP kinases N terminal domain AYJ57_09695 PF00348 Polyprenyl synthetase AYJ57_09705 PF05175 Methyltransferase small domain AYJ57_09710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_09725 PF02803 Thiolase, C-terminal domain AYJ57_09725 PF00108 Thiolase, N-terminal domain AYJ57_09730 PF00563 EAL domain AYJ57_09730 PF12792 CSS motif domain associated with EAL AYJ57_09735 PF00163 Ribosomal protein S4/S9 N-terminal domain AYJ57_09735 PF01479 S4 domain AYJ57_09740 PF08362 YcdC-like protein, C-terminal region AYJ57_09740 PF00440 Bacterial regulatory proteins, tetR family AYJ57_09745 PF07687 Peptidase dimerisation domain AYJ57_09745 PF01546 Peptidase family M20/M25/M40 AYJ57_09750 PF01979 Amidohydrolase family AYJ57_09755 PF00005 ABC transporter AYJ57_09765 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_09770 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_09790 PF00356 Bacterial regulatory proteins, lacI family AYJ57_09790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AYJ57_09805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_09805 PF03466 LysR substrate binding domain AYJ57_09810 PF12704 MacB-like periplasmic core domain AYJ57_09810 PF00005 ABC transporter AYJ57_09810 PF02687 FtsX-like permease family AYJ57_09830 PF01790 Prolipoprotein diacylglyceryl transferase AYJ57_09850 PF01037 Lrp/AsnC ligand binding domain AYJ57_09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_09865 PF14306 PUA-like domain AYJ57_09865 PF01747 ATP-sulfurylase AYJ57_09875 PF01678 Diaminopimelate epimerase AYJ57_09885 PF00011 Hsp20/alpha crystallin family AYJ57_09895 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYJ57_09895 PF03807 NADP oxidoreductase coenzyme F420-dependent AYJ57_09900 PF01588 Putative tRNA binding domain AYJ57_09905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_09905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_09910 PF00265 Thymidine kinase AYJ57_09920 PF00919 Uncharacterized protein family UPF0004 AYJ57_09920 PF04055 Radical SAM superfamily AYJ57_09920 PF18693 TRAM domain AYJ57_09925 PF03600 Citrate transporter AYJ57_09925 PF02080 TrkA-C domain AYJ57_09935 PF01061 ABC-2 type transporter AYJ57_09940 PF01066 CDP-alcohol phosphatidyltransferase AYJ57_09945 PF04299 Putative FMN-binding domain AYJ57_09950 PF00919 Uncharacterized protein family UPF0004 AYJ57_09950 PF04055 Radical SAM superfamily AYJ57_09955 PF01678 Diaminopimelate epimerase AYJ57_09975 PF01943 Polysaccharide biosynthesis protein AYJ57_09975 PF14667 Polysaccharide biosynthesis C-terminal domain AYJ57_10000 PF16363 GDP-mannose 4,6 dehydratase AYJ57_10010 PF02397 Bacterial sugar transferase AYJ57_10020 PF13439 Glycosyltransferase Family 4 AYJ57_10025 PF13439 Glycosyltransferase Family 4 AYJ57_10025 PF00534 Glycosyl transferases group 1 AYJ57_10035 PF03690 Uncharacterised protein family (UPF0160) AYJ57_10040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_10040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_10040 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYJ57_10040 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_10045 PF07519 Tannase and feruloyl esterase AYJ57_10055 PF00550 Phosphopantetheine attachment site AYJ57_10055 PF07993 Male sterility protein AYJ57_10055 PF00501 AMP-binding enzyme AYJ57_10060 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_10065 PF00106 short chain dehydrogenase AYJ57_10070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_10085 PF12802 MarR family AYJ57_10090 PF01494 FAD binding domain AYJ57_10090 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AYJ57_10100 PF00753 Metallo-beta-lactamase superfamily AYJ57_10100 PF04273 Putative phosphatase (DUF442) AYJ57_10105 PF00857 Isochorismatase family AYJ57_10110 PF01613 Flavin reductase like domain AYJ57_10115 PF01425 Amidase AYJ57_10120 PF00296 Luciferase-like monooxygenase AYJ57_10125 PF07729 FCD domain AYJ57_10125 PF00392 Bacterial regulatory proteins, gntR family AYJ57_10140 PF01425 Amidase AYJ57_10145 PF00881 Nitroreductase family AYJ57_10150 PF03484 tRNA synthetase B5 domain AYJ57_10150 PF03483 B3/4 domain AYJ57_10150 PF01588 Putative tRNA binding domain AYJ57_10150 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AYJ57_10150 PF03147 Ferredoxin-fold anticodon binding domain AYJ57_10160 PF02627 Carboxymuconolactone decarboxylase family AYJ57_10165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_10165 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_10165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_10180 PF01738 Dienelactone hydrolase family AYJ57_10195 PF00149 Calcineurin-like phosphoesterase AYJ57_10215 PF01066 CDP-alcohol phosphatidyltransferase AYJ57_10225 PF00313 'Cold-shock' DNA-binding domain AYJ57_10235 PF00005 ABC transporter AYJ57_10235 PF12848 ABC transporter AYJ57_10240 PF01467 Cytidylyltransferase-like AYJ57_10255 PF01921 tRNA synthetases class I (K) AYJ57_10265 PF13229 Right handed beta helix region AYJ57_10265 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AYJ57_10265 PF12708 Pectate lyase superfamily protein AYJ57_10275 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYJ57_10285 PF00923 Transaldolase/Fructose-6-phosphate aldolase AYJ57_10290 PF18074 Primosomal protein N C-terminal domain AYJ57_10290 PF17764 3′ DNA-binding domain (3′BD) AYJ57_10290 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AYJ57_10290 PF00270 DEAD/DEAH box helicase AYJ57_10295 PF01037 Lrp/AsnC ligand binding domain AYJ57_10295 PF13404 AsnC-type helix-turn-helix domain AYJ57_10305 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYJ57_10305 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_10310 PF13380 CoA binding domain AYJ57_10315 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AYJ57_10320 PF00977 Histidine biosynthesis protein AYJ57_10325 PF02872 5'-nucleotidase, C-terminal domain AYJ57_10325 PF00149 Calcineurin-like phosphoesterase AYJ57_10330 PF00440 Bacterial regulatory proteins, tetR family AYJ57_10330 PF16859 Tetracyclin repressor-like, C-terminal domain AYJ57_10345 PF01180 Dihydroorotate dehydrogenase AYJ57_10350 PF03960 ArsC family AYJ57_10355 PF10672 S-adenosylmethionine-dependent methyltransferase AYJ57_10355 PF02926 THUMP domain AYJ57_10355 PF01170 Putative RNA methylase family UPF0020 AYJ57_10360 PF00977 Histidine biosynthesis protein AYJ57_10365 PF00117 Glutamine amidotransferase class-I AYJ57_10370 PF00475 Imidazoleglycerol-phosphate dehydratase AYJ57_10395 PF00580 UvrD/REP helicase N-terminal domain AYJ57_10395 PF13361 UvrD-like helicase C-terminal domain AYJ57_10405 PF02785 Biotin carboxylase C-terminal domain AYJ57_10405 PF02436 Conserved carboxylase domain AYJ57_10405 PF00682 HMGL-like AYJ57_10405 PF00289 Biotin carboxylase, N-terminal domain AYJ57_10405 PF00364 Biotin-requiring enzyme AYJ57_10405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ57_10415 PF00795 Carbon-nitrogen hydrolase AYJ57_10420 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_10425 PF03466 LysR substrate binding domain AYJ57_10430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_10430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_10430 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_10435 PF02515 CoA-transferase family III AYJ57_10445 PF01575 MaoC like domain AYJ57_10455 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_10475 PF00391 PEP-utilising enzyme, mobile domain AYJ57_10475 PF05524 PEP-utilising enzyme, N-terminal AYJ57_10475 PF02896 PEP-utilising enzyme, TIM barrel domain AYJ57_10480 PF13840 ACT domain AYJ57_10480 PF01842 ACT domain AYJ57_10480 PF00696 Amino acid kinase family AYJ57_10505 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYJ57_10515 PF00588 SpoU rRNA Methylase family AYJ57_10515 PF08032 RNA 2'-O ribose methyltransferase substrate binding AYJ57_10525 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AYJ57_10525 PF00925 GTP cyclohydrolase II AYJ57_10530 PF00885 6,7-dimethyl-8-ribityllumazine synthase AYJ57_10535 PF01029 NusB family AYJ57_10580 PF00849 RNA pseudouridylate synthase AYJ57_10585 PF04545 Sigma-70, region 4 AYJ57_10585 PF04542 Sigma-70 region 2 AYJ57_10585 PF00140 Sigma-70 factor, region 1.2 AYJ57_10590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_10590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_10600 PF00892 EamA-like transporter family AYJ57_10605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AYJ57_10610 PF01266 FAD dependent oxidoreductase AYJ57_10615 PF00120 Glutamine synthetase, catalytic domain AYJ57_10620 PF02540 NAD synthase AYJ57_10620 PF00117 Glutamine amidotransferase class-I AYJ57_10620 PF00958 GMP synthase C terminal domain AYJ57_10625 PF00120 Glutamine synthetase, catalytic domain AYJ57_10630 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_10635 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_10640 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_10645 PF00005 ABC transporter AYJ57_10660 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AYJ57_10665 PF01757 Acyltransferase family AYJ57_10670 PF06418 CTP synthase N-terminus AYJ57_10670 PF00117 Glutamine amidotransferase class-I AYJ57_10700 PF06965 Na+/H+ antiporter 1 AYJ57_10700 PF01343 Peptidase family S49 AYJ57_10710 PF01699 Sodium/calcium exchanger protein AYJ57_10720 PF08459 UvrC Helix-hairpin-helix N-terminal AYJ57_10720 PF01541 GIY-YIG catalytic domain AYJ57_10720 PF02151 UvrB/uvrC motif AYJ57_10720 PF12826 Helix-hairpin-helix motif AYJ57_10725 PF01118 Semialdehyde dehydrogenase, NAD binding domain AYJ57_10730 PF01926 50S ribosome-binding GTPase AYJ57_10730 PF06071 Protein of unknown function (DUF933) AYJ57_10735 PF01554 MatE AYJ57_10755 PF03976 Polyphosphate kinase 2 (PPK2) AYJ57_10765 PF00290 Tryptophan synthase alpha chain AYJ57_10770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_10770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_10775 PF17042 Nucleotide-binding C-terminal domain AYJ57_10775 PF07005 Sugar-binding N-terminal domain AYJ57_10780 PF00596 Class II Aldolase and Adducin N-terminal domain AYJ57_10785 PF01261 Xylose isomerase-like TIM barrel AYJ57_10790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_10790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_10800 PF00294 pfkB family carbohydrate kinase AYJ57_10810 PF02913 FAD linked oxidases, C-terminal domain AYJ57_10810 PF01565 FAD binding domain AYJ57_10815 PF00701 Dihydrodipicolinate synthetase family AYJ57_10830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_10830 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_10835 PF00356 Bacterial regulatory proteins, lacI family AYJ57_10850 PF00920 Dehydratase family AYJ57_10860 PF01370 NAD dependent epimerase/dehydratase family AYJ57_10865 PF00892 EamA-like transporter family AYJ57_10870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_10870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_10875 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AYJ57_10875 PF08666 SAF domain AYJ57_10880 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_10890 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_10895 PF07729 FCD domain AYJ57_10895 PF00392 Bacterial regulatory proteins, gntR family AYJ57_10925 PF07536 HWE histidine kinase AYJ57_10925 PF13426 PAS domain AYJ57_10930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_10930 PF03466 LysR substrate binding domain AYJ57_10935 PF02913 FAD linked oxidases, C-terminal domain AYJ57_10935 PF01565 FAD binding domain AYJ57_10935 PF13183 4Fe-4S dicluster domain AYJ57_10940 PF00455 DeoR C terminal sensor domain AYJ57_10940 PF08220 DeoR-like helix-turn-helix domain AYJ57_10950 PF13192 Thioredoxin domain AYJ57_10950 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_10955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYJ57_10955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYJ57_10970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_10975 PF03466 LysR substrate binding domain AYJ57_10975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_10985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_10995 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_11000 PF02633 Creatinine amidohydrolase AYJ57_11005 PF00005 ABC transporter AYJ57_11005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_11010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_11010 PF00005 ABC transporter AYJ57_11020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_11025 PF02538 Hydantoinase B/oxoprolinase AYJ57_11030 PF05378 Hydantoinase/oxoprolinase N-terminal region AYJ57_11030 PF01968 Hydantoinase/oxoprolinase AYJ57_11035 PF07729 FCD domain AYJ57_11035 PF00392 Bacterial regulatory proteins, gntR family AYJ57_11040 PF01266 FAD dependent oxidoreductase AYJ57_11045 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_11055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_11060 PF05378 Hydantoinase/oxoprolinase N-terminal region AYJ57_11060 PF01968 Hydantoinase/oxoprolinase AYJ57_11075 PF01266 FAD dependent oxidoreductase AYJ57_11080 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_11080 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_11090 PF03466 LysR substrate binding domain AYJ57_11095 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AYJ57_11100 PF00005 ABC transporter AYJ57_11100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_11105 PF00005 ABC transporter AYJ57_11105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_11110 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_11110 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_11115 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_11120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_11145 PF01522 Polysaccharide deacetylase AYJ57_11150 PF01112 Asparaginase AYJ57_11170 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_11170 PF08448 PAS fold AYJ57_11170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_11170 PF00072 Response regulator receiver domain AYJ57_11170 PF13188 PAS domain AYJ57_11175 PF00072 Response regulator receiver domain AYJ57_11175 PF00486 Transcriptional regulatory protein, C terminal AYJ57_11180 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_11195 PF03061 Thioesterase superfamily AYJ57_11210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_11210 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_11210 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYJ57_11210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_11215 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_11215 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_11215 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_11220 PF02803 Thiolase, C-terminal domain AYJ57_11220 PF00108 Thiolase, N-terminal domain AYJ57_11225 PF00376 MerR family regulatory protein AYJ57_11225 PF09278 MerR, DNA binding AYJ57_11230 PF13193 AMP-binding enzyme C-terminal domain AYJ57_11230 PF00501 AMP-binding enzyme AYJ57_11235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AYJ57_11240 PF03061 Thioesterase superfamily AYJ57_11245 PF00392 Bacterial regulatory proteins, gntR family AYJ57_11245 PF07729 FCD domain AYJ57_11250 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_11255 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AYJ57_11260 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_11265 PF05336 L-rhamnose mutarotase AYJ57_11270 PF08666 SAF domain AYJ57_11270 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AYJ57_11275 PF08666 SAF domain AYJ57_11275 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus AYJ57_11285 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYJ57_11300 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_11310 PF13277 YmdB-like protein AYJ57_11320 PF02080 TrkA-C domain AYJ57_11320 PF03600 Citrate transporter AYJ57_11325 PF01709 Transcriptional regulator AYJ57_11350 PF12697 Alpha/beta hydrolase family AYJ57_11360 PF00471 Ribosomal protein L33 AYJ57_11370 PF00425 chorismate binding enzyme AYJ57_11370 PF04715 Anthranilate synthase component I, N terminal region AYJ57_11370 PF00117 Glutamine amidotransferase class-I AYJ57_11380 PF01027 Inhibitor of apoptosis-promoting Bax1 AYJ57_11390 PF03466 LysR substrate binding domain AYJ57_11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_11395 PF00107 Zinc-binding dehydrogenase AYJ57_11395 PF16197 Ketoacyl-synthetase C-terminal extension AYJ57_11395 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_11395 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_11395 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_11395 PF00698 Acyl transferase domain AYJ57_11395 PF14765 Polyketide synthase dehydratase AYJ57_11395 PF00550 Phosphopantetheine attachment site AYJ57_11395 PF08659 KR domain AYJ57_11400 PF01381 Helix-turn-helix AYJ57_11405 PF00459 Inositol monophosphatase family AYJ57_11410 PF01979 Amidohydrolase family AYJ57_11425 PF01979 Amidohydrolase family AYJ57_11430 PF00571 CBS domain AYJ57_11430 PF03448 MgtE intracellular N domain AYJ57_11430 PF01769 Divalent cation transporter AYJ57_11435 PF01812 5-formyltetrahydrofolate cyclo-ligase family AYJ57_11440 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AYJ57_11440 PF02844 Phosphoribosylglycinamide synthetase, N domain AYJ57_11440 PF02843 Phosphoribosylglycinamide synthetase, C domain AYJ57_11450 PF02601 Exonuclease VII, large subunit AYJ57_11450 PF13742 OB-fold nucleic acid binding domain AYJ57_11460 PF01464 Transglycosylase SLT domain AYJ57_11460 PF14718 Soluble lytic murein transglycosylase L domain AYJ57_11465 PF00448 SRP54-type protein, GTPase domain AYJ57_11465 PF02881 SRP54-type protein, helical bundle domain AYJ57_11470 PF02308 MgtC family AYJ57_11475 PF04279 Intracellular septation protein A AYJ57_11480 PF00083 Sugar (and other) transporter AYJ57_11480 PF07690 Major Facilitator Superfamily AYJ57_11490 PF00709 Adenylosuccinate synthetase AYJ57_11510 PF01026 TatD related DNase AYJ57_11520 PF02381 MraZ protein, putative antitoxin-like AYJ57_11525 PF01795 MraW methylase family AYJ57_11535 PF03717 Penicillin-binding Protein dimerisation domain AYJ57_11535 PF00905 Penicillin binding protein transpeptidase domain AYJ57_11540 PF01225 Mur ligase family, catalytic domain AYJ57_11540 PF02875 Mur ligase family, glutamate ligase domain AYJ57_11540 PF08245 Mur ligase middle domain AYJ57_11545 PF08245 Mur ligase middle domain AYJ57_11545 PF02875 Mur ligase family, glutamate ligase domain AYJ57_11545 PF01225 Mur ligase family, catalytic domain AYJ57_11550 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AYJ57_11550 PF00953 Glycosyl transferase family 4 AYJ57_11555 PF08245 Mur ligase middle domain AYJ57_11555 PF02875 Mur ligase family, glutamate ligase domain AYJ57_11570 PF01098 Cell cycle protein AYJ57_11575 PF03033 Glycosyltransferase family 28 N-terminal domain AYJ57_11575 PF04101 Glycosyltransferase family 28 C-terminal domain AYJ57_11580 PF02875 Mur ligase family, glutamate ligase domain AYJ57_11580 PF08245 Mur ligase middle domain AYJ57_11580 PF01225 Mur ligase family, catalytic domain AYJ57_11595 PF01565 FAD binding domain AYJ57_11595 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AYJ57_11600 PF01820 D-ala D-ala ligase N-terminus AYJ57_11600 PF07478 D-ala D-ala ligase C-terminus AYJ57_11605 PF03799 Cell division protein FtsQ AYJ57_11610 PF02491 SHS2 domain inserted in FTSA AYJ57_11615 PF00091 Tubulin/FtsZ family, GTPase domain AYJ57_11615 PF12327 FtsZ family, C-terminal domain AYJ57_11620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AYJ57_11625 PF13525 Outer membrane lipoprotein AYJ57_11630 PF02463 RecF/RecN/SMC N terminal domain AYJ57_11635 PF10458 Valyl tRNA synthetase tRNA binding arm AYJ57_11635 PF08264 Anticodon-binding domain of tRNA AYJ57_11635 PF00133 tRNA synthetases class I (I, L, M and V) AYJ57_11650 PF10609 NUBPL iron-transfer P-loop NTPase AYJ57_11655 PF09115 DNA polymerase III, delta subunit, C terminal AYJ57_11660 PF02223 Thymidylate kinase AYJ57_11665 PF00768 D-alanyl-D-alanine carboxypeptidase AYJ57_11665 PF07943 Penicillin-binding protein 5, C-terminal domain AYJ57_11720 PF02796 Helix-turn-helix domain of resolvase AYJ57_11720 PF00239 Resolvase, N terminal domain AYJ57_11745 PF07664 Ferrous iron transport protein B C terminus AYJ57_11745 PF02421 Ferrous iron transport protein B AYJ57_11745 PF07670 Nucleoside recognition AYJ57_11750 PF00149 Calcineurin-like phosphoesterase AYJ57_11755 PF00072 Response regulator receiver domain AYJ57_11755 PF00486 Transcriptional regulatory protein, C terminal AYJ57_11760 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_11795 PF10396 GTP-binding protein TrmE N-terminus AYJ57_11795 PF12631 MnmE helical domain AYJ57_11795 PF01926 50S ribosome-binding GTPase AYJ57_11800 PF01926 50S ribosome-binding GTPase AYJ57_11805 PF07519 Tannase and feruloyl esterase AYJ57_11815 PF01758 Sodium Bile acid symporter family AYJ57_11820 PF03358 NADPH-dependent FMN reductase AYJ57_11830 PF03466 LysR substrate binding domain AYJ57_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_11855 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AYJ57_11855 PF00356 Bacterial regulatory proteins, lacI family AYJ57_11860 PF13618 Gluconate 2-dehydrogenase subunit 3 AYJ57_11865 PF00732 GMC oxidoreductase AYJ57_11865 PF05199 GMC oxidoreductase AYJ57_11870 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ57_11870 PF00034 Cytochrome c AYJ57_11875 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_11875 PF16193 AAA C-terminal domain AYJ57_11875 PF12002 MgsA AAA+ ATPase C terminal AYJ57_11880 PF01557 Fumarylacetoacetate (FAA) hydrolase family AYJ57_11890 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AYJ57_11895 PF00510 Cytochrome c oxidase subunit III AYJ57_11900 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYJ57_11905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYJ57_11905 PF06481 COX Aromatic Rich Motif AYJ57_11925 PF01975 Survival protein SurE AYJ57_11930 PF00106 short chain dehydrogenase AYJ57_11940 PF13537 Glutamine amidotransferase domain AYJ57_11940 PF00156 Phosphoribosyl transferase domain AYJ57_11950 PF06745 KaiC AYJ57_11950 PF18073 Rubredoxin metal binding domain AYJ57_11970 PF00005 ABC transporter AYJ57_11975 PF02405 Permease MlaE AYJ57_11980 PF00842 Alanine racemase, C-terminal domain AYJ57_11980 PF01168 Alanine racemase, N-terminal domain AYJ57_11985 PF03796 DnaB-like helicase C terminal domain AYJ57_11985 PF00772 DnaB-like helicase N terminal domain AYJ57_11990 PF00156 Phosphoribosyl transferase domain AYJ57_11995 PF01979 Amidohydrolase family AYJ57_12025 PF00155 Aminotransferase class I and II AYJ57_12035 PF04551 GcpE protein AYJ57_12040 PF00072 Response regulator receiver domain AYJ57_12040 PF13188 PAS domain AYJ57_12040 PF08448 PAS fold AYJ57_12040 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_12040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_12060 PF01520 N-acetylmuramoyl-L-alanine amidase AYJ57_12060 PF11741 AMIN domain AYJ57_12065 PF00905 Penicillin binding protein transpeptidase domain AYJ57_12065 PF17092 Penicillin-binding protein OB-like domain AYJ57_12065 PF00912 Transglycosylase AYJ57_12070 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_12070 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_12075 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_12080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_12085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_12085 PF00005 ABC transporter AYJ57_12090 PF05209 Septum formation inhibitor MinC, N-terminal domain AYJ57_12090 PF03775 Septum formation inhibitor MinC, C-terminal domain AYJ57_12095 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AYJ57_12100 PF03776 Septum formation topological specificity factor MinE AYJ57_12105 PF00012 Hsp70 protein AYJ57_12110 PF07687 Peptidase dimerisation domain AYJ57_12110 PF01546 Peptidase family M20/M25/M40 AYJ57_12115 PF01266 FAD dependent oxidoreductase AYJ57_12120 PF07687 Peptidase dimerisation domain AYJ57_12120 PF01546 Peptidase family M20/M25/M40 AYJ57_12130 PF00924 Mechanosensitive ion channel AYJ57_12140 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_12140 PF00360 Phytochrome region AYJ57_12140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_12140 PF08446 PAS fold AYJ57_12140 PF01590 GAF domain AYJ57_12150 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYJ57_12150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYJ57_12150 PF02811 PHP domain AYJ57_12150 PF14579 Helix-hairpin-helix motif AYJ57_12150 PF01336 OB-fold nucleic acid binding domain AYJ57_12165 PF04376 Arginine-tRNA-protein transferase, N terminus AYJ57_12165 PF04377 Arginine-tRNA-protein transferase, C terminus AYJ57_12170 PF01476 LysM domain AYJ57_12170 PF04972 BON domain AYJ57_12195 PF08335 GlnD PII-uridylyltransferase AYJ57_12195 PF03710 Glutamate-ammonia ligase adenylyltransferase AYJ57_12205 PF01081 KDPG and KHG aldolase AYJ57_12210 PF00920 Dehydratase family AYJ57_12225 PF03334 Na+/H+ antiporter subunit AYJ57_12230 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AYJ57_12245 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AYJ57_12250 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AYJ57_12250 PF00361 Proton-conducting membrane transporter AYJ57_12250 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AYJ57_12250 PF13244 Domain of unknown function (DUF4040) AYJ57_12255 PF00005 ABC transporter AYJ57_12255 PF08402 TOBE domain AYJ57_12280 PF00043 Glutathione S-transferase, C-terminal domain AYJ57_12280 PF13417 Glutathione S-transferase, N-terminal domain AYJ57_12305 PF00009 Elongation factor Tu GTP binding domain AYJ57_12305 PF16658 Class II release factor RF3, C-terminal domain AYJ57_12305 PF03144 Elongation factor Tu domain 2 AYJ57_12325 PF00106 short chain dehydrogenase AYJ57_12330 PF08713 DNA alkylation repair enzyme AYJ57_12340 PF01702 Queuine tRNA-ribosyltransferase AYJ57_12355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYJ57_12360 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_12360 PF02190 ATP-dependent protease La (LON) substrate-binding domain AYJ57_12360 PF05362 Lon protease (S16) C-terminal proteolytic domain AYJ57_12390 PF04542 Sigma-70 region 2 AYJ57_12390 PF04545 Sigma-70, region 4 AYJ57_12400 PF05114 Protein of unknown function (DUF692) AYJ57_12415 PF01435 Peptidase family M48 AYJ57_12420 PF00521 DNA gyrase/topoisomerase IV, subunit A AYJ57_12420 PF03989 DNA gyrase C-terminal domain, beta-propeller AYJ57_12425 PF06233 Usg-like family AYJ57_12435 PF00490 Delta-aminolevulinic acid dehydratase AYJ57_12445 PF02559 CarD-like/TRCF domain AYJ57_12445 PF17757 UvrB interaction domain AYJ57_12445 PF00270 DEAD/DEAH box helicase AYJ57_12445 PF00271 Helicase conserved C-terminal domain AYJ57_12445 PF03461 TRCF domain AYJ57_12450 PF00551 Formyl transferase AYJ57_12455 PF00128 Alpha amylase, catalytic domain AYJ57_12460 PF09335 SNARE associated Golgi protein AYJ57_12480 PF02219 Methylenetetrahydrofolate reductase AYJ57_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_12485 PF03466 LysR substrate binding domain AYJ57_12490 PF00313 'Cold-shock' DNA-binding domain AYJ57_12495 PF03960 ArsC family AYJ57_12500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AYJ57_12500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ57_12500 PF02824 TGS domain AYJ57_12500 PF03129 Anticodon binding domain AYJ57_12525 PF00892 EamA-like transporter family AYJ57_12545 PF00255 Glutathione peroxidase AYJ57_12550 PF01258 Prokaryotic dksA/traR C4-type zinc finger AYJ57_12565 PF01276 Orn/Lys/Arg decarboxylase, major domain AYJ57_12565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AYJ57_12565 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AYJ57_12570 PF04679 ATP dependent DNA ligase C terminal region AYJ57_12570 PF01068 ATP dependent DNA ligase domain AYJ57_12570 PF04675 DNA ligase N terminus AYJ57_12600 PF01479 S4 domain AYJ57_12605 PF00037 4Fe-4S binding domain AYJ57_12605 PF11953 Domain of unknown function (DUF3470) AYJ57_12610 PF02559 CarD-like/TRCF domain AYJ57_12615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_12620 PF00999 Sodium/hydrogen exchanger family AYJ57_12620 PF02254 TrkA-N domain AYJ57_12625 PF01053 Cys/Met metabolism PLP-dependent enzyme AYJ57_12630 PF02649 Type I GTP cyclohydrolase folE2 AYJ57_12640 PF02386 Cation transport protein AYJ57_12645 PF02913 FAD linked oxidases, C-terminal domain AYJ57_12645 PF01565 FAD binding domain AYJ57_12650 PF00654 Voltage gated chloride channel AYJ57_12655 PF02566 OsmC-like protein AYJ57_12660 PF01047 MarR family AYJ57_12670 PF00557 Metallopeptidase family M24 AYJ57_12670 PF05195 Aminopeptidase P, N-terminal domain AYJ57_12675 PF06213 Cobalamin biosynthesis protein CobT AYJ57_12675 PF11775 Cobalamin biosynthesis protein CobT VWA domain AYJ57_12690 PF12556 Cobaltochelatase CobS subunit N terminal AYJ57_12690 PF07728 AAA domain (dynein-related subfamily) AYJ57_12690 PF08406 CbbQ/NirQ/NorQ C-terminal AYJ57_12705 PF02469 Fasciclin domain AYJ57_12710 PF01641 SelR domain AYJ57_12715 PF00226 DnaJ domain AYJ57_12730 PF03594 Benzoate membrane transport protein AYJ57_12750 PF04349 Periplasmic glucan biosynthesis protein, MdoG AYJ57_12760 PF02637 GatB domain AYJ57_12760 PF02934 GatB/GatE catalytic domain AYJ57_12785 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AYJ57_12785 PF01433 Peptidase family M1 domain AYJ57_12785 PF11940 Domain of unknown function (DUF3458) Ig-like fold AYJ57_12800 PF00873 AcrB/AcrD/AcrF family AYJ57_12815 PF13360 PQQ-like domain AYJ57_12815 PF13570 PQQ-like domain AYJ57_12815 PF00069 Protein kinase domain AYJ57_12815 PF01011 PQQ enzyme repeat AYJ57_12825 PF00202 Aminotransferase class-III AYJ57_12830 PF00850 Histone deacetylase domain AYJ57_12840 PF04403 Paraquat-inducible protein A AYJ57_12845 PF02470 MlaD protein AYJ57_12875 PF00929 Exonuclease AYJ57_12890 PF00474 Sodium:solute symporter family AYJ57_12900 PF05191 Adenylate kinase, active site lid AYJ57_12905 PF00501 AMP-binding enzyme AYJ57_12905 PF16177 Acetyl-coenzyme A synthetase N-terminus AYJ57_12905 PF13193 AMP-binding enzyme C-terminal domain AYJ57_12920 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_12930 PF00072 Response regulator receiver domain AYJ57_12935 PF08281 Sigma-70, region 4 AYJ57_12935 PF04542 Sigma-70 region 2 AYJ57_12940 PF07568 Histidine kinase AYJ57_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_12940 PF12282 Signal transduction histidine kinase AYJ57_12950 PF07722 Peptidase C26 AYJ57_12960 PF00171 Aldehyde dehydrogenase family AYJ57_12965 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AYJ57_12965 PF01926 50S ribosome-binding GTPase AYJ57_12985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ57_12985 PF02403 Seryl-tRNA synthetase N-terminal domain AYJ57_12990 PF00089 Trypsin AYJ57_13005 PF02699 Preprotein translocase subunit AYJ57_13010 PF02355 Protein export membrane protein AYJ57_13015 PF07549 SecD/SecF GG Motif AYJ57_13015 PF02355 Protein export membrane protein AYJ57_13020 PF04430 Protein of unknown function (DUF498/DUF598) AYJ57_13025 PF00005 ABC transporter AYJ57_13030 PF03379 CcmB protein AYJ57_13035 PF01578 Cytochrome C assembly protein AYJ57_13040 PF04995 Heme exporter protein D (CcmD) AYJ57_13045 PF08534 Redoxin AYJ57_13050 PF02632 BioY family AYJ57_13055 PF00293 NUDIX domain AYJ57_13080 PF03951 Glutamine synthetase, beta-Grasp domain AYJ57_13080 PF00120 Glutamine synthetase, catalytic domain AYJ57_13085 PF00543 Nitrogen regulatory protein P-II AYJ57_13090 PF01256 Carbohydrate kinase AYJ57_13090 PF03853 YjeF-related protein N-terminus AYJ57_13115 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_13120 PF00005 ABC transporter AYJ57_13120 PF00571 CBS domain AYJ57_13135 PF00550 Phosphopantetheine attachment site AYJ57_13140 PF00535 Glycosyl transferase family 2 AYJ57_13160 PF08484 C-methyltransferase C-terminal domain AYJ57_13160 PF08421 Putative zinc binding domain AYJ57_13165 PF16363 GDP-mannose 4,6 dehydratase AYJ57_13170 PF00483 Nucleotidyl transferase AYJ57_13190 PF13847 Methyltransferase domain AYJ57_13200 PF00535 Glycosyl transferase family 2 AYJ57_13210 PF01593 Flavin containing amine oxidoreductase AYJ57_13225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ57_13225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ57_13225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ57_13235 PF01209 ubiE/COQ5 methyltransferase family AYJ57_13240 PF00534 Glycosyl transferases group 1 AYJ57_13270 PF01209 ubiE/COQ5 methyltransferase family AYJ57_13275 PF16363 GDP-mannose 4,6 dehydratase AYJ57_13285 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ57_13285 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ57_13285 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ57_13290 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_13300 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_13305 PF00171 Aldehyde dehydrogenase family AYJ57_13310 PF00005 ABC transporter AYJ57_13315 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_13315 PF00005 ABC transporter AYJ57_13320 PF02653 Branched-chain amino acid transport system / permease component AYJ57_13325 PF02653 Branched-chain amino acid transport system / permease component AYJ57_13345 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_13350 PF02219 Methylenetetrahydrofolate reductase AYJ57_13365 PF02541 Ppx/GppA phosphatase family AYJ57_13370 PF01728 FtsJ-like methyltransferase AYJ57_13385 PF13660 Domain of unknown function (DUF4147) AYJ57_13385 PF05161 MOFRL family AYJ57_13395 PF07690 Major Facilitator Superfamily AYJ57_13410 PF13175 AAA ATPase domain AYJ57_13425 PF00210 Ferritin-like domain AYJ57_13455 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_13455 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_13460 PF02618 YceG-like family AYJ57_13465 PF00398 Ribosomal RNA adenine dimethylase AYJ57_13470 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYJ57_13475 PF00639 PPIC-type PPIASE domain AYJ57_13475 PF09312 SurA N-terminal domain AYJ57_13480 PF04453 LPS transport system D AYJ57_13480 PF03968 OstA-like protein AYJ57_13495 PF00883 Cytosol aminopeptidase family, catalytic domain AYJ57_13505 PF00027 Cyclic nucleotide-binding domain AYJ57_13505 PF13545 Crp-like helix-turn-helix domain AYJ57_13515 PF01914 MarC family integral membrane protein AYJ57_13520 PF00005 ABC transporter AYJ57_13520 PF12848 ABC transporter AYJ57_13525 PF00334 Nucleoside diphosphate kinase AYJ57_13535 PF01679 Proteolipid membrane potential modulator AYJ57_13545 PF00155 Aminotransferase class I and II AYJ57_13575 PF00005 ABC transporter AYJ57_13575 PF08402 TOBE domain AYJ57_13580 PF04860 Phage portal protein AYJ57_13655 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_13655 PF06426 Serine acetyltransferase, N-terminal AYJ57_13660 PF07690 Major Facilitator Superfamily AYJ57_13665 PF00364 Biotin-requiring enzyme AYJ57_13665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AYJ57_13665 PF02817 e3 binding domain AYJ57_13670 PF02779 Transketolase, pyrimidine binding domain AYJ57_13670 PF02780 Transketolase, C-terminal domain AYJ57_13670 PF00364 Biotin-requiring enzyme AYJ57_13675 PF00676 Dehydrogenase E1 component AYJ57_13680 PF04977 Septum formation initiator AYJ57_13685 PF00162 Phosphoglycerate kinase AYJ57_13690 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYJ57_13695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AYJ57_13705 PF00571 CBS domain AYJ57_13705 PF00478 IMP dehydrogenase / GMP reductase domain AYJ57_13715 PF01979 Amidohydrolase family AYJ57_13720 PF01029 NusB family AYJ57_13720 PF01189 16S rRNA methyltransferase RsmB/F AYJ57_13725 PF00072 Response regulator receiver domain AYJ57_13725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_13725 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_13725 PF13188 PAS domain AYJ57_13725 PF08448 PAS fold AYJ57_13735 PF00154 recA bacterial DNA recombination protein AYJ57_13740 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AYJ57_13740 PF03625 Domain of unknown function DUF302 AYJ57_13745 PF01521 Iron-sulphur cluster biosynthesis AYJ57_13750 PF01966 HD domain AYJ57_13750 PF13286 Phosphohydrolase-associated domain AYJ57_13755 PF02080 TrkA-C domain AYJ57_13755 PF00999 Sodium/hydrogen exchanger family AYJ57_13755 PF03471 Transporter associated domain AYJ57_13760 PF00750 tRNA synthetases class I (R) AYJ57_13760 PF03485 Arginyl tRNA synthetase N terminal domain AYJ57_13760 PF05746 DALR anticodon binding domain AYJ57_13770 PF00933 Glycosyl hydrolase family 3 N terminal domain AYJ57_13775 PF02616 Segregation and condensation protein ScpA AYJ57_13780 PF04079 Segregation and condensation complex subunit ScpB AYJ57_13795 PF00692 dUTPase AYJ57_13805 PF13411 MerR HTH family regulatory protein AYJ57_13810 PF00216 Bacterial DNA-binding protein AYJ57_13815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AYJ57_13815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AYJ57_13820 PF02504 Fatty acid synthesis protein AYJ57_13825 PF01783 Ribosomal L32p protein family AYJ57_13845 PF00850 Histone deacetylase domain AYJ57_13915 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_13920 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_13930 PF00005 ABC transporter AYJ57_13930 PF08402 TOBE domain AYJ57_13935 PF00196 Bacterial regulatory proteins, luxR family AYJ57_13945 PF00005 ABC transporter AYJ57_13945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_13950 PF03069 Acetamidase/Formamidase family AYJ57_13955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_13960 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_13965 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_13965 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_13985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_13985 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ57_13990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AYJ57_14005 PF00119 ATP synthase A chain AYJ57_14010 PF00137 ATP synthase subunit C AYJ57_14015 PF00430 ATP synthase B/B' CF(0) AYJ57_14020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_14020 PF00306 ATP synthase alpha/beta chain, C terminal domain AYJ57_14020 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ57_14025 PF00231 ATP synthase AYJ57_14045 PF00005 ABC transporter AYJ57_14055 PF01235 Sodium:alanine symporter family AYJ57_14065 PF17763 Glutaminase/Asparaginase C-terminal domain AYJ57_14065 PF00710 Asparaginase, N-terminal AYJ57_14070 PF00206 Lyase AYJ57_14070 PF10415 Fumarase C C-terminus AYJ57_14085 PF04909 Amidohydrolase AYJ57_14100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_14110 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_14115 PF03466 LysR substrate binding domain AYJ57_14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_14130 PF00107 Zinc-binding dehydrogenase AYJ57_14130 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_14135 PF02390 Putative methyltransferase AYJ57_14140 PF00248 Aldo/keto reductase family AYJ57_14155 PF09334 tRNA synthetases class I (M) AYJ57_14170 PF13340 Putative transposase of IS4/5 family (DUF4096) AYJ57_14200 PF01272 Transcription elongation factor, GreA/GreB, C-term AYJ57_14200 PF03449 Transcription elongation factor, N-terminal AYJ57_14225 PF00753 Metallo-beta-lactamase superfamily AYJ57_14225 PF16123 Hydroxyacylglutathione hydrolase C-terminus AYJ57_14230 PF12806 Acetyl-CoA dehydrogenase C-terminal like AYJ57_14230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_14230 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_14230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_14235 PF03481 Putative GTP-binding controlling metal-binding AYJ57_14235 PF01300 Telomere recombination AYJ57_14240 PF02622 Uncharacterized ACR, COG1678 AYJ57_14260 PF00994 Probable molybdopterin binding domain AYJ57_14270 PF03167 Uracil DNA glycosylase superfamily AYJ57_14275 PF01475 Ferric uptake regulator family AYJ57_14280 PF01297 Zinc-uptake complex component A periplasmic AYJ57_14285 PF00005 ABC transporter AYJ57_14290 PF00950 ABC 3 transport family AYJ57_14295 PF00950 ABC 3 transport family AYJ57_14300 PF00107 Zinc-binding dehydrogenase AYJ57_14300 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_14305 PF00005 ABC transporter AYJ57_14310 PF02653 Branched-chain amino acid transport system / permease component AYJ57_14315 PF13407 Periplasmic binding protein domain AYJ57_14325 PF00245 Alkaline phosphatase AYJ57_14335 PF00005 ABC transporter AYJ57_14345 PF07715 TonB-dependent Receptor Plug Domain AYJ57_14345 PF00593 TonB dependent receptor AYJ57_14355 PF01032 FecCD transport family AYJ57_14360 PF00005 ABC transporter AYJ57_14365 PF02654 Cobalamin-5-phosphate synthase AYJ57_14370 PF02277 Phosphoribosyltransferase AYJ57_14375 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AYJ57_14390 PF03186 CobD/Cbib protein AYJ57_14395 PF00155 Aminotransferase class I and II AYJ57_14400 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AYJ57_14405 PF01266 FAD dependent oxidoreductase AYJ57_14410 PF00106 short chain dehydrogenase AYJ57_14410 PF00300 Histidine phosphatase superfamily (branch 1) AYJ57_14425 PF01208 Uroporphyrinogen decarboxylase (URO-D) AYJ57_14430 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AYJ57_14430 PF03900 Porphobilinogen deaminase, C-terminal domain AYJ57_14440 PF02091 Glycyl-tRNA synthetase alpha subunit AYJ57_14450 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_14455 PF00072 Response regulator receiver domain AYJ57_14455 PF00486 Transcriptional regulatory protein, C terminal AYJ57_14465 PF01546 Peptidase family M20/M25/M40 AYJ57_14480 PF01925 Sulfite exporter TauE/SafE AYJ57_14510 PF00814 Glycoprotease family AYJ57_14515 PF01106 NifU-like domain AYJ57_14530 PF01063 Amino-transferase class IV AYJ57_14535 PF02535 ZIP Zinc transporter AYJ57_14540 PF01070 FMN-dependent dehydrogenase AYJ57_14550 PF14693 Ribosomal protein TL5, C-terminal domain AYJ57_14550 PF01386 Ribosomal L25p family AYJ57_14560 PF01195 Peptidyl-tRNA hydrolase AYJ57_14570 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_14575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AYJ57_14575 PF03129 Anticodon binding domain AYJ57_14580 PF01594 AI-2E family transporter AYJ57_14590 PF13089 Polyphosphate kinase N-terminal domain AYJ57_14590 PF02503 Polyphosphate kinase middle domain AYJ57_14590 PF13090 Polyphosphate kinase C-terminal domain 2 AYJ57_14590 PF17941 Polyphosphate kinase C-terminal domain 1 AYJ57_14600 PF00561 alpha/beta hydrolase fold AYJ57_14600 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AYJ57_14610 PF00939 Sodium:sulfate symporter transmembrane region AYJ57_14615 PF01144 Coenzyme A transferase AYJ57_14620 PF01144 Coenzyme A transferase AYJ57_14625 PF13368 Topoisomerase C-terminal repeat AYJ57_14625 PF01751 Toprim domain AYJ57_14625 PF01396 Topoisomerase DNA binding C4 zinc finger AYJ57_14625 PF01131 DNA topoisomerase AYJ57_14630 PF02481 DNA recombination-mediator protein A AYJ57_14630 PF17782 DprA winged helix domain AYJ57_14635 PF01523 Putative modulator of DNA gyrase AYJ57_14640 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AYJ57_14640 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AYJ57_14645 PF01040 UbiA prenyltransferase family AYJ57_14655 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AYJ57_14660 PF00510 Cytochrome c oxidase subunit III AYJ57_14665 PF02104 SURF1 family AYJ57_14670 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_14670 PF14821 Threonine synthase N terminus AYJ57_14675 PF00675 Insulinase (Peptidase family M16) AYJ57_14675 PF05193 Peptidase M16 inactive domain AYJ57_14690 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_14695 PF13649 Methyltransferase domain AYJ57_14700 PF13416 Bacterial extracellular solute-binding protein AYJ57_14705 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_14710 PF00005 ABC transporter AYJ57_14715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYJ57_14715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYJ57_14725 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AYJ57_14725 PF09297 NADH pyrophosphatase zinc ribbon domain AYJ57_14725 PF00293 NUDIX domain AYJ57_14730 PF02872 5'-nucleotidase, C-terminal domain AYJ57_14730 PF00149 Calcineurin-like phosphoesterase AYJ57_14745 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_14755 PF00005 ABC transporter AYJ57_14760 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_14790 PF00872 Transposase, Mutator family AYJ57_14800 PF01062 Bestrophin, RFP-TM, chloride channel AYJ57_14805 PF03129 Anticodon binding domain AYJ57_14805 PF13393 Histidyl-tRNA synthetase AYJ57_14810 PF13393 Histidyl-tRNA synthetase AYJ57_14815 PF01634 ATP phosphoribosyltransferase AYJ57_14825 PF02798 Glutathione S-transferase, N-terminal domain AYJ57_14830 PF00271 Helicase conserved C-terminal domain AYJ57_14830 PF08494 DEAD/H associated AYJ57_14830 PF00270 DEAD/DEAH box helicase AYJ57_14845 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AYJ57_14845 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AYJ57_14850 PF02153 Prephenate dehydrogenase AYJ57_14850 PF01817 Chorismate mutase type II AYJ57_14855 PF01268 Formate--tetrahydrofolate ligase AYJ57_14865 PF13649 Methyltransferase domain AYJ57_14870 PF17862 AAA+ lid domain AYJ57_14870 PF06480 FtsH Extracellular AYJ57_14870 PF01434 Peptidase family M41 AYJ57_14870 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_14875 PF01171 PP-loop family AYJ57_14885 PF00691 OmpA family AYJ57_14890 PF07676 WD40-like Beta Propeller Repeat AYJ57_14890 PF04052 TolB amino-terminal domain AYJ57_14900 PF02472 Biopolymer transport protein ExbD/TolR AYJ57_14905 PF01618 MotA/TolQ/ExbB proton channel family AYJ57_14915 PF00005 ABC transporter AYJ57_14920 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_14925 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_14930 PF13416 Bacterial extracellular solute-binding protein AYJ57_14935 PF00196 Bacterial regulatory proteins, luxR family AYJ57_14935 PF00072 Response regulator receiver domain AYJ57_14945 PF01627 Hpt domain AYJ57_14945 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_14945 PF00072 Response regulator receiver domain AYJ57_14945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_14945 PF00672 HAMP domain AYJ57_14945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AYJ57_14950 PF00535 Glycosyl transferase family 2 AYJ57_14955 PF00535 Glycosyl transferase family 2 AYJ57_14960 PF00534 Glycosyl transferases group 1 AYJ57_14960 PF13439 Glycosyltransferase Family 4 AYJ57_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_14965 PF03466 LysR substrate binding domain AYJ57_14985 PF01040 UbiA prenyltransferase family AYJ57_14990 PF04452 RNA methyltransferase AYJ57_15000 PF04107 Glutamate-cysteine ligase family 2(GCS2) AYJ57_15010 PF01740 STAS domain AYJ57_15015 PF00108 Thiolase, N-terminal domain AYJ57_15015 PF02803 Thiolase, C-terminal domain AYJ57_15020 PF00849 RNA pseudouridylate synthase AYJ57_15035 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AYJ57_15045 PF00216 Bacterial DNA-binding protein AYJ57_15055 PF00575 S1 RNA binding domain AYJ57_15060 PF02769 AIR synthase related protein, C-terminal domain AYJ57_15060 PF00586 AIR synthase related protein, N-terminal domain AYJ57_15065 PF00581 Rhodanese-like domain AYJ57_15075 PF01645 Conserved region in glutamate synthase AYJ57_15080 PF01613 Flavin reductase like domain AYJ57_15095 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_15115 PF13091 PLD-like domain AYJ57_15140 PF01548 Transposase AYJ57_15140 PF02371 Transposase IS116/IS110/IS902 family AYJ57_15155 PF03466 LysR substrate binding domain AYJ57_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_15165 PF00682 HMGL-like AYJ57_15170 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_15185 PF00368 Hydroxymethylglutaryl-coenzyme A reductase AYJ57_15190 PF00155 Aminotransferase class I and II AYJ57_15190 PF00392 Bacterial regulatory proteins, gntR family AYJ57_15195 PF00270 DEAD/DEAH box helicase AYJ57_15195 PF09382 RQC domain AYJ57_15195 PF00271 Helicase conserved C-terminal domain AYJ57_15195 PF00570 HRDC domain AYJ57_15195 PF16124 RecQ zinc-binding AYJ57_15200 PF01381 Helix-turn-helix AYJ57_15230 PF13087 AAA domain AYJ57_15230 PF13086 AAA domain AYJ57_15230 PF13087 AAA domain AYJ57_15230 PF13086 AAA domain AYJ57_15230 PF13195 Protein of unknown function (DUF4011) AYJ57_15230 PF13195 Protein of unknown function (DUF4011) AYJ57_15245 PF00176 SNF2 family N-terminal domain AYJ57_15245 PF00271 Helicase conserved C-terminal domain AYJ57_15290 PF13419 Haloacid dehalogenase-like hydrolase AYJ57_15300 PF00072 Response regulator receiver domain AYJ57_15300 PF00990 Diguanylate cyclase, GGDEF domain AYJ57_15315 PF04542 Sigma-70 region 2 AYJ57_15315 PF08281 Sigma-70, region 4 AYJ57_15330 PF03466 LysR substrate binding domain AYJ57_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_15335 PF12697 Alpha/beta hydrolase family AYJ57_15360 PF00009 Elongation factor Tu GTP binding domain AYJ57_15360 PF03144 Elongation factor Tu domain 2 AYJ57_15360 PF00679 Elongation factor G C-terminus AYJ57_15360 PF06421 GTP-binding protein LepA C-terminus AYJ57_15375 PF08241 Methyltransferase domain AYJ57_15405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_15410 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_15415 PF00120 Glutamine synthetase, catalytic domain AYJ57_15415 PF03951 Glutamine synthetase, beta-Grasp domain AYJ57_15420 PF00171 Aldehyde dehydrogenase family AYJ57_15425 PF00465 Iron-containing alcohol dehydrogenase AYJ57_15430 PF01266 FAD dependent oxidoreductase AYJ57_15440 PF02913 FAD linked oxidases, C-terminal domain AYJ57_15440 PF01565 FAD binding domain AYJ57_15455 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AYJ57_15455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_15460 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AYJ57_15460 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AYJ57_15465 PF00202 Aminotransferase class-III AYJ57_15470 PF01416 tRNA pseudouridine synthase AYJ57_15475 PF04317 YcjX-like family, DUF463 AYJ57_15485 PF05128 Domain of unknown function (DUF697) AYJ57_15500 PF08264 Anticodon-binding domain of tRNA AYJ57_15500 PF00133 tRNA synthetases class I (I, L, M and V) AYJ57_15515 PF01451 Low molecular weight phosphotyrosine protein phosphatase AYJ57_15520 PF02146 Sir2 family AYJ57_15530 PF00830 Ribosomal L28 family AYJ57_15540 PF07687 Peptidase dimerisation domain AYJ57_15540 PF01546 Peptidase family M20/M25/M40 AYJ57_15545 PF13382 Adenine deaminase C-terminal domain AYJ57_15545 PF01979 Amidohydrolase family AYJ57_15555 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_15560 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_15565 PF08402 TOBE domain AYJ57_15565 PF00005 ABC transporter AYJ57_15570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYJ57_15570 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_15575 PF03466 LysR substrate binding domain AYJ57_15575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_15580 PF00171 Aldehyde dehydrogenase family AYJ57_15590 PF00271 Helicase conserved C-terminal domain AYJ57_15590 PF04408 Helicase associated domain (HA2) AYJ57_15590 PF08482 ATP-dependent helicase C-terminal AYJ57_15590 PF00270 DEAD/DEAH box helicase AYJ57_15595 PF01464 Transglycosylase SLT domain AYJ57_15615 PF00263 Bacterial type II and III secretion system protein AYJ57_15615 PF04972 BON domain AYJ57_15615 PF13629 Pilus formation protein N terminal region AYJ57_15620 PF00223 Photosystem I psaA/psaB protein AYJ57_15620 PF00691 OmpA family AYJ57_15630 PF00437 Type II/IV secretion system protein AYJ57_15660 PF03807 NADP oxidoreductase coenzyme F420-dependent AYJ57_15660 PF14748 Pyrroline-5-carboxylate reductase dimerisation AYJ57_15705 PF00665 Integrase core domain AYJ57_15735 PF00589 Phage integrase family AYJ57_15735 PF02899 Phage integrase, N-terminal SAM-like domain AYJ57_15780 PF03783 Curli production assembly/transport component CsgG AYJ57_15855 PF00596 Class II Aldolase and Adducin N-terminal domain AYJ57_15865 PF13581 Histidine kinase-like ATPase domain AYJ57_15865 PF07536 HWE histidine kinase AYJ57_15865 PF13426 PAS domain AYJ57_15870 PF01739 CheR methyltransferase, SAM binding domain AYJ57_15870 PF01339 CheB methylesterase AYJ57_15870 PF08448 PAS fold AYJ57_15870 PF03705 CheR methyltransferase, all-alpha domain AYJ57_15875 PF00072 Response regulator receiver domain AYJ57_15885 PF04955 HupE / UreJ protein AYJ57_15890 PF00891 O-methyltransferase domain AYJ57_15890 PF16864 Dimerisation domain AYJ57_15895 PF00392 Bacterial regulatory proteins, gntR family AYJ57_15895 PF07729 FCD domain AYJ57_15900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_15905 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_15915 PF00005 ABC transporter AYJ57_15915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_15920 PF00005 ABC transporter AYJ57_15920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_15930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_15935 PF00005 ABC transporter AYJ57_15935 PF02687 FtsX-like permease family AYJ57_15935 PF12704 MacB-like periplasmic core domain AYJ57_15940 PF01418 Helix-turn-helix domain, rpiR family AYJ57_15940 PF01380 SIS domain AYJ57_15945 PF16868 NMT1-like family AYJ57_15955 PF00582 Universal stress protein family AYJ57_15960 PF00202 Aminotransferase class-III AYJ57_15970 PF07690 Major Facilitator Superfamily AYJ57_15985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_15990 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_16000 PF00005 ABC transporter AYJ57_16005 PF01032 FecCD transport family AYJ57_16020 PF00975 Thioesterase domain AYJ57_16020 PF00550 Phosphopantetheine attachment site AYJ57_16020 PF00668 Condensation domain AYJ57_16020 PF13193 AMP-binding enzyme C-terminal domain AYJ57_16020 PF00501 AMP-binding enzyme AYJ57_16025 PF00550 Phosphopantetheine attachment site AYJ57_16025 PF00857 Isochorismatase family AYJ57_16030 PF13193 AMP-binding enzyme C-terminal domain AYJ57_16030 PF00501 AMP-binding enzyme AYJ57_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16035 PF03466 LysR substrate binding domain AYJ57_16040 PF01799 [2Fe-2S] binding domain AYJ57_16040 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_16045 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_16045 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYJ57_16060 PF01979 Amidohydrolase family AYJ57_16065 PF05899 Protein of unknown function (DUF861) AYJ57_16065 PF07883 Cupin domain AYJ57_16070 PF09339 IclR helix-turn-helix domain AYJ57_16070 PF01614 Bacterial transcriptional regulator AYJ57_16075 PF00266 Aminotransferase class-V AYJ57_16080 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_16090 PF02423 Ornithine cyclodeaminase/mu-crystallin family AYJ57_16095 PF00860 Permease family AYJ57_16100 PF04115 Ureidoglycolate lyase AYJ57_16110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16110 PF03466 LysR substrate binding domain AYJ57_16135 PF01618 MotA/TolQ/ExbB proton channel family AYJ57_16140 PF02472 Biopolymer transport protein ExbD/TolR AYJ57_16165 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_16175 PF01263 Aldose 1-epimerase AYJ57_16180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_16185 PF08450 SMP-30/Gluconolactonase/LRE-like region AYJ57_16190 PF00920 Dehydratase family AYJ57_16195 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16200 PF00005 ABC transporter AYJ57_16205 PF13407 Periplasmic binding protein domain AYJ57_16210 PF03466 LysR substrate binding domain AYJ57_16210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16215 PF00392 Bacterial regulatory proteins, gntR family AYJ57_16215 PF07729 FCD domain AYJ57_16220 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16225 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16230 PF00005 ABC transporter AYJ57_16235 PF13407 Periplasmic binding protein domain AYJ57_16245 PF13614 AAA domain AYJ57_16255 PF01261 Xylose isomerase-like TIM barrel AYJ57_16260 PF00596 Class II Aldolase and Adducin N-terminal domain AYJ57_16265 PF00455 DeoR C terminal sensor domain AYJ57_16265 PF08220 DeoR-like helix-turn-helix domain AYJ57_16270 PF13407 Periplasmic binding protein domain AYJ57_16275 PF00005 ABC transporter AYJ57_16280 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16285 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16290 PF05336 L-rhamnose mutarotase AYJ57_16300 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_16300 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_16305 PF01037 Lrp/AsnC ligand binding domain AYJ57_16305 PF13404 AsnC-type helix-turn-helix domain AYJ57_16310 PF00491 Arginase family AYJ57_16315 PF02423 Ornithine cyclodeaminase/mu-crystallin family AYJ57_16320 PF16859 Tetracyclin repressor-like, C-terminal domain AYJ57_16320 PF00440 Bacterial regulatory proteins, tetR family AYJ57_16325 PF13533 Biotin-lipoyl like AYJ57_16330 PF07690 Major Facilitator Superfamily AYJ57_16335 PF00271 Helicase conserved C-terminal domain AYJ57_16335 PF00270 DEAD/DEAH box helicase AYJ57_16340 PF01384 Phosphate transporter family AYJ57_16350 PF02073 Thermophilic metalloprotease (M29) AYJ57_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16360 PF03466 LysR substrate binding domain AYJ57_16375 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_16385 PF13593 SBF-like CPA transporter family (DUF4137) AYJ57_16405 PF01380 SIS domain AYJ57_16405 PF00571 CBS domain AYJ57_16420 PF02424 ApbE family AYJ57_16425 PF11973 NQRA C-terminal domain AYJ57_16425 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AYJ57_16430 PF03116 NQR2, RnfD, RnfE family AYJ57_16435 PF04205 FMN-binding domain AYJ57_16440 PF02508 Rnf-Nqr subunit, membrane protein AYJ57_16445 PF02508 Rnf-Nqr subunit, membrane protein AYJ57_16450 PF00175 Oxidoreductase NAD-binding domain AYJ57_16450 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_16450 PF00970 Oxidoreductase FAD-binding domain AYJ57_16455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_16465 PF01513 ATP-NAD kinase AYJ57_16470 PF00464 Serine hydroxymethyltransferase AYJ57_16475 PF05977 Transmembrane secretion effector AYJ57_16480 PF05552 Conserved TM helix AYJ57_16480 PF00924 Mechanosensitive ion channel AYJ57_16485 PF10417 C-terminal domain of 1-Cys peroxiredoxin AYJ57_16485 PF00578 AhpC/TSA family AYJ57_16490 PF00171 Aldehyde dehydrogenase family AYJ57_16495 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AYJ57_16500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AYJ57_16510 PF00459 Inositol monophosphatase family AYJ57_16515 PF01523 Putative modulator of DNA gyrase AYJ57_16525 PF02033 Ribosome-binding factor A AYJ57_16530 PF01113 Dihydrodipicolinate reductase, N-terminus AYJ57_16530 PF05173 Dihydrodipicolinate reductase, C-terminus AYJ57_16535 PF00689 Cation transporting ATPase, C-terminus AYJ57_16535 PF00690 Cation transporter/ATPase, N-terminus AYJ57_16545 PF01029 NusB family AYJ57_16545 PF01189 16S rRNA methyltransferase RsmB/F AYJ57_16555 PF02142 MGS-like domain AYJ57_16555 PF01808 AICARFT/IMPCHase bienzyme AYJ57_16565 PF01252 Signal peptidase (SPase) II AYJ57_16575 PF00675 Insulinase (Peptidase family M16) AYJ57_16575 PF05193 Peptidase M16 inactive domain AYJ57_16580 PF05193 Peptidase M16 inactive domain AYJ57_16585 PF00701 Dihydrodipicolinate synthetase family AYJ57_16590 PF01464 Transglycosylase SLT domain AYJ57_16590 PF14718 Soluble lytic murein transglycosylase L domain AYJ57_16595 PF01494 FAD binding domain AYJ57_16610 PF07729 FCD domain AYJ57_16610 PF00392 Bacterial regulatory proteins, gntR family AYJ57_16620 PF00117 Glutamine amidotransferase class-I AYJ57_16620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AYJ57_16645 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYJ57_16650 PF01510 N-acetylmuramoyl-L-alanine amidase AYJ57_16660 PF01425 Amidase AYJ57_16665 PF02686 Glu-tRNAGln amidotransferase C subunit AYJ57_16675 PF01381 Helix-turn-helix AYJ57_16675 PF06114 IrrE N-terminal-like domain AYJ57_16675 PF09856 Predicted transcriptional regulator (DUF2083) AYJ57_16680 PF07690 Major Facilitator Superfamily AYJ57_16685 PF01039 Carboxyl transferase domain AYJ57_16710 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AYJ57_16710 PF02785 Biotin carboxylase C-terminal domain AYJ57_16710 PF00289 Biotin carboxylase, N-terminal domain AYJ57_16735 PF05099 Tellurite resistance protein TerB AYJ57_16735 PF00226 DnaJ domain AYJ57_16750 PF02541 Ppx/GppA phosphatase family AYJ57_16755 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ57_16755 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ57_16755 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ57_16755 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ57_16760 PF00809 Pterin binding enzyme AYJ57_16765 PF02152 Dihydroneopterin aldolase AYJ57_16775 PF02896 PEP-utilising enzyme, TIM barrel domain AYJ57_16775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYJ57_16775 PF00391 PEP-utilising enzyme, mobile domain AYJ57_16780 PF05746 DALR anticodon binding domain AYJ57_16780 PF02092 Glycyl-tRNA synthetase beta subunit AYJ57_16810 PF13411 MerR HTH family regulatory protein AYJ57_16815 PF02627 Carboxymuconolactone decarboxylase family AYJ57_16830 PF00171 Aldehyde dehydrogenase family AYJ57_16835 PF00158 Sigma-54 interaction domain AYJ57_16835 PF01590 GAF domain AYJ57_16835 PF02954 Bacterial regulatory protein, Fis family AYJ57_16840 PF13409 Glutathione S-transferase, N-terminal domain AYJ57_16845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_16850 PF03466 LysR substrate binding domain AYJ57_16850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16855 PF03099 Biotin/lipoate A/B protein ligase family AYJ57_16870 PF00501 AMP-binding enzyme AYJ57_16875 PF00005 ABC transporter AYJ57_16875 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_16880 PF02653 Branched-chain amino acid transport system / permease component AYJ57_16900 PF00005 ABC transporter AYJ57_16905 PF02834 LigT like Phosphoesterase AYJ57_16910 PF00501 AMP-binding enzyme AYJ57_16910 PF14535 AMP-binding enzyme C-terminal domain AYJ57_16915 PF13847 Methyltransferase domain AYJ57_16940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AYJ57_16940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AYJ57_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_16950 PF03466 LysR substrate binding domain AYJ57_16965 PF04143 Sulphur transport AYJ57_16975 PF07690 Major Facilitator Superfamily AYJ57_16980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AYJ57_16990 PF02224 Cytidylate kinase AYJ57_16995 PF00248 Aldo/keto reductase family AYJ57_17025 PF13462 Thioredoxin AYJ57_17035 PF00730 HhH-GPD superfamily base excision DNA repair protein AYJ57_17035 PF14815 NUDIX domain AYJ57_17040 PF00487 Fatty acid desaturase AYJ57_17045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AYJ57_17050 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AYJ57_17050 PF00591 Glycosyl transferase family, a/b domain AYJ57_17050 PF02885 Glycosyl transferase family, helical bundle domain AYJ57_17055 PF01676 Metalloenzyme superfamily AYJ57_17060 PF00962 Adenosine/AMP deaminase AYJ57_17085 PF00445 Ribonuclease T2 family AYJ57_17105 PF02132 RecR protein AYJ57_17105 PF13662 Toprim domain AYJ57_17110 PF02575 YbaB/EbfC DNA-binding family AYJ57_17120 PF12170 DNA polymerase III tau subunit V interacting with alpha AYJ57_17120 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AYJ57_17120 PF12169 DNA polymerase III subunits gamma and tau domain III AYJ57_17130 PF04228 Putative neutral zinc metallopeptidase AYJ57_17150 PF08402 TOBE domain AYJ57_17150 PF00005 ABC transporter AYJ57_17155 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17160 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17170 PF00005 ABC transporter AYJ57_17175 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_17175 PF00005 ABC transporter AYJ57_17185 PF02653 Branched-chain amino acid transport system / permease component AYJ57_17195 PF14403 Circularly permuted ATP-grasp type 2 AYJ57_17215 PF03975 CheD chemotactic sensory transduction AYJ57_17220 PF01339 CheB methylesterase AYJ57_17220 PF00072 Response regulator receiver domain AYJ57_17230 PF00072 Response regulator receiver domain AYJ57_17235 PF03705 CheR methyltransferase, all-alpha domain AYJ57_17235 PF01739 CheR methyltransferase, SAM binding domain AYJ57_17240 PF01584 CheW-like domain AYJ57_17245 PF01627 Hpt domain AYJ57_17245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_17245 PF01584 CheW-like domain AYJ57_17245 PF02895 Signal transducing histidine kinase, homodimeric domain AYJ57_17250 PF00486 Transcriptional regulatory protein, C terminal AYJ57_17250 PF00072 Response regulator receiver domain AYJ57_17260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ57_17260 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ57_17260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ57_17275 PF04102 SlyX AYJ57_17285 PF02811 PHP domain AYJ57_17285 PF07733 Bacterial DNA polymerase III alpha NTPase domain AYJ57_17285 PF14579 Helix-hairpin-helix motif AYJ57_17285 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AYJ57_17295 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_17295 PF01799 [2Fe-2S] binding domain AYJ57_17300 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYJ57_17300 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_17325 PF02608 ABC transporter substrate-binding protein PnrA-like AYJ57_17340 PF03477 ATP cone domain AYJ57_17340 PF00317 Ribonucleotide reductase, all-alpha domain AYJ57_17340 PF02867 Ribonucleotide reductase, barrel domain AYJ57_17355 PF00155 Aminotransferase class I and II AYJ57_17355 PF00392 Bacterial regulatory proteins, gntR family AYJ57_17360 PF07690 Major Facilitator Superfamily AYJ57_17390 PF17042 Nucleotide-binding C-terminal domain AYJ57_17390 PF07005 Sugar-binding N-terminal domain AYJ57_17395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_17395 PF00005 ABC transporter AYJ57_17400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_17400 PF00005 ABC transporter AYJ57_17405 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17405 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_17410 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17420 PF00202 Aminotransferase class-III AYJ57_17430 PF01297 Zinc-uptake complex component A periplasmic AYJ57_17435 PF01475 Ferric uptake regulator family AYJ57_17440 PF00005 ABC transporter AYJ57_17445 PF00950 ABC 3 transport family AYJ57_17450 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_17455 PF02082 Transcriptional regulator AYJ57_17465 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ57_17465 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ57_17500 PF00586 AIR synthase related protein, N-terminal domain AYJ57_17500 PF02769 AIR synthase related protein, C-terminal domain AYJ57_17515 PF00795 Carbon-nitrogen hydrolase AYJ57_17525 PF00155 Aminotransferase class I and II AYJ57_17525 PF00392 Bacterial regulatory proteins, gntR family AYJ57_17530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_17535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_17545 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_17550 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_17550 PF00107 Zinc-binding dehydrogenase AYJ57_17560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYJ57_17560 PF13378 Enolase C-terminal domain-like AYJ57_17570 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AYJ57_17580 PF12833 Helix-turn-helix domain AYJ57_17580 PF14525 AraC-binding-like domain AYJ57_17590 PF00005 ABC transporter AYJ57_17595 PF02653 Branched-chain amino acid transport system / permease component AYJ57_17600 PF02653 Branched-chain amino acid transport system / permease component AYJ57_17610 PF03466 LysR substrate binding domain AYJ57_17610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_17615 PF07690 Major Facilitator Superfamily AYJ57_17625 PF03466 LysR substrate binding domain AYJ57_17625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_17630 PF07687 Peptidase dimerisation domain AYJ57_17630 PF01546 Peptidase family M20/M25/M40 AYJ57_17635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_17635 PF00005 ABC transporter AYJ57_17645 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_17665 PF00005 ABC transporter AYJ57_17665 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_17670 PF00005 ABC transporter AYJ57_17675 PF02653 Branched-chain amino acid transport system / permease component AYJ57_17690 PF01968 Hydantoinase/oxoprolinase AYJ57_17690 PF05378 Hydantoinase/oxoprolinase N-terminal region AYJ57_17700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_17700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_17710 PF00005 ABC transporter AYJ57_17725 PF01425 Amidase AYJ57_17730 PF00857 Isochorismatase family AYJ57_17745 PF02979 Nitrile hydratase, alpha chain AYJ57_17755 PF12852 Cupin AYJ57_17755 PF12833 Helix-turn-helix domain AYJ57_17765 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_17765 PF00107 Zinc-binding dehydrogenase AYJ57_17765 PF16197 Ketoacyl-synthetase C-terminal extension AYJ57_17765 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_17765 PF00698 Acyl transferase domain AYJ57_17765 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_17765 PF08659 KR domain AYJ57_17765 PF00550 Phosphopantetheine attachment site AYJ57_17765 PF14765 Polyketide synthase dehydratase AYJ57_17770 PF01425 Amidase AYJ57_17775 PF01425 Amidase AYJ57_17785 PF02653 Branched-chain amino acid transport system / permease component AYJ57_17795 PF12399 Branched-chain amino acid ATP-binding cassette transporter AYJ57_17795 PF00005 ABC transporter AYJ57_17800 PF00005 ABC transporter AYJ57_17805 PF00857 Isochorismatase family AYJ57_17830 PF00149 Calcineurin-like phosphoesterase AYJ57_17880 PF13340 Putative transposase of IS4/5 family (DUF4096) AYJ57_17895 PF01590 GAF domain AYJ57_17895 PF02954 Bacterial regulatory protein, Fis family AYJ57_17895 PF00158 Sigma-54 interaction domain AYJ57_17900 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_17910 PF00005 ABC transporter AYJ57_17910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_17915 PF00005 ABC transporter AYJ57_17915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_17920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_17925 PF13378 Enolase C-terminal domain-like AYJ57_17925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYJ57_17930 PF07729 FCD domain AYJ57_17930 PF00392 Bacterial regulatory proteins, gntR family AYJ57_17935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_17935 PF03466 LysR substrate binding domain AYJ57_17960 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18005 PF03466 LysR substrate binding domain AYJ57_18005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_18010 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_18015 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_18020 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18025 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18030 PF00005 ABC transporter AYJ57_18035 PF03601 Conserved hypothetical protein 698 AYJ57_18045 PF07969 Amidohydrolase family AYJ57_18050 PF02371 Transposase IS116/IS110/IS902 family AYJ57_18050 PF01548 Transposase AYJ57_18065 PF12833 Helix-turn-helix domain AYJ57_18065 PF14525 AraC-binding-like domain AYJ57_18085 PF01548 Transposase AYJ57_18085 PF02371 Transposase IS116/IS110/IS902 family AYJ57_18130 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AYJ57_18135 PF01810 LysE type translocator AYJ57_18140 PF01037 Lrp/AsnC ligand binding domain AYJ57_18145 PF00732 GMC oxidoreductase AYJ57_18145 PF05199 GMC oxidoreductase AYJ57_18150 PF00920 Dehydratase family AYJ57_18155 PF18030 RimK PreATP-grasp domain AYJ57_18155 PF08443 RimK-like ATP-grasp domain AYJ57_18165 PF03328 HpcH/HpaI aldolase/citrate lyase family AYJ57_18175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYJ57_18175 PF13378 Enolase C-terminal domain-like AYJ57_18180 PF01063 Amino-transferase class IV AYJ57_18210 PF02615 Malate/L-lactate dehydrogenase AYJ57_18220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_18220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_18225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_18225 PF00005 ABC transporter AYJ57_18235 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_18245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_18245 PF03466 LysR substrate binding domain AYJ57_18250 PF00892 EamA-like transporter family AYJ57_18260 PF00834 Ribulose-phosphate 3 epimerase family AYJ57_18265 PF00004 ATPase family associated with various cellular activities (AAA) AYJ57_18265 PF17866 AAA lid domain AYJ57_18270 PF00101 Ribulose bisphosphate carboxylase, small chain AYJ57_18275 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AYJ57_18275 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AYJ57_18280 PF01116 Fructose-bisphosphate aldolase class-II AYJ57_18285 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ57_18285 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ57_18290 PF00456 Transketolase, thiamine diphosphate binding domain AYJ57_18290 PF02780 Transketolase, C-terminal domain AYJ57_18290 PF02779 Transketolase, pyrimidine binding domain AYJ57_18295 PF00485 Phosphoribulokinase / Uridine kinase family AYJ57_18300 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYJ57_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_18305 PF03466 LysR substrate binding domain AYJ57_18325 PF00586 AIR synthase related protein, N-terminal domain AYJ57_18325 PF02769 AIR synthase related protein, C-terminal domain AYJ57_18340 PF00795 Carbon-nitrogen hydrolase AYJ57_18350 PF00392 Bacterial regulatory proteins, gntR family AYJ57_18350 PF00155 Aminotransferase class I and II AYJ57_18360 PF03466 LysR substrate binding domain AYJ57_18360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_18365 PF02585 GlcNAc-PI de-N-acetylase AYJ57_18375 PF03737 Aldolase/RraA AYJ57_18380 PF04303 PrpF protein AYJ57_18400 PF01494 FAD binding domain AYJ57_18435 PF00072 Response regulator receiver domain AYJ57_18435 PF00196 Bacterial regulatory proteins, luxR family AYJ57_18440 PF02397 Bacterial sugar transferase AYJ57_18455 PF00535 Glycosyl transferase family 2 AYJ57_18460 PF00535 Glycosyl transferase family 2 AYJ57_18465 PF00534 Glycosyl transferases group 1 AYJ57_18465 PF13439 Glycosyltransferase Family 4 AYJ57_18470 PF07729 FCD domain AYJ57_18470 PF00392 Bacterial regulatory proteins, gntR family AYJ57_18485 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_18500 PF00107 Zinc-binding dehydrogenase AYJ57_18500 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_18510 PF03551 Transcriptional regulator PadR-like family AYJ57_18520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ57_18520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ57_18530 PF00873 AcrB/AcrD/AcrF family AYJ57_18535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_18540 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_18550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_18555 PF01370 NAD dependent epimerase/dehydratase family AYJ57_18560 PF00701 Dihydrodipicolinate synthetase family AYJ57_18565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AYJ57_18565 PF13378 Enolase C-terminal domain-like AYJ57_18570 PF04909 Amidohydrolase AYJ57_18580 PF07470 Glycosyl Hydrolase Family 88 AYJ57_18585 PF00295 Glycosyl hydrolases family 28 AYJ57_18590 PF01547 Bacterial extracellular solute-binding protein AYJ57_18600 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18605 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18620 PF00392 Bacterial regulatory proteins, gntR family AYJ57_18620 PF07729 FCD domain AYJ57_18625 PF04962 KduI/IolB family AYJ57_18635 PF13460 NAD(P)H-binding AYJ57_18685 PF00753 Metallo-beta-lactamase superfamily AYJ57_18685 PF04273 Putative phosphatase (DUF442) AYJ57_18695 PF04143 Sulphur transport AYJ57_18700 PF00753 Metallo-beta-lactamase superfamily AYJ57_18710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_18710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_18710 PF00378 Enoyl-CoA hydratase/isomerase AYJ57_18720 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) AYJ57_18730 PF00596 Class II Aldolase and Adducin N-terminal domain AYJ57_18735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_18750 PF00005 ABC transporter AYJ57_18750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_18755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_18760 PF01425 Amidase AYJ57_18765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_18775 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_18780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYJ57_18795 PF00873 AcrB/AcrD/AcrF family AYJ57_18805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AYJ57_18815 PF00202 Aminotransferase class-III AYJ57_18820 PF00171 Aldehyde dehydrogenase family AYJ57_18825 PF01037 Lrp/AsnC ligand binding domain AYJ57_18830 PF00557 Metallopeptidase family M24 AYJ57_18830 PF01321 Creatinase/Prolidase N-terminal domain AYJ57_18860 PF00296 Luciferase-like monooxygenase AYJ57_18865 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AYJ57_18870 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AYJ57_18885 PF01546 Peptidase family M20/M25/M40 AYJ57_18890 PF00005 ABC transporter AYJ57_18890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_18895 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18895 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_18900 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_18905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_18910 PF00459 Inositol monophosphatase family AYJ57_18915 PF00455 DeoR C terminal sensor domain AYJ57_18915 PF08220 DeoR-like helix-turn-helix domain AYJ57_18960 PF00072 Response regulator receiver domain AYJ57_18960 PF00486 Transcriptional regulatory protein, C terminal AYJ57_18975 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ57_18990 PF01493 GXGXG motif AYJ57_18995 PF01645 Conserved region in glutamate synthase AYJ57_19000 PF00120 Glutamine synthetase, catalytic domain AYJ57_19005 PF01593 Flavin containing amine oxidoreductase AYJ57_19010 PF07690 Major Facilitator Superfamily AYJ57_19015 PF02690 Na+/Pi-cotransporter AYJ57_19030 PF18267 Rubredoxin NAD+ reductase C-terminal domain AYJ57_19030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AYJ57_19030 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_19030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AYJ57_19030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_19045 PF00069 Protein kinase domain AYJ57_19045 PF03793 PASTA domain AYJ57_19050 PF02560 Cyanate lyase C-terminal domain AYJ57_19060 PF05199 GMC oxidoreductase AYJ57_19060 PF00732 GMC oxidoreductase AYJ57_19065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ57_19065 PF00034 Cytochrome c AYJ57_19070 PF07969 Amidohydrolase family AYJ57_19090 PF00005 ABC transporter AYJ57_19110 PF07729 FCD domain AYJ57_19110 PF00392 Bacterial regulatory proteins, gntR family AYJ57_19130 PF00155 Aminotransferase class I and II AYJ57_19135 PF01799 [2Fe-2S] binding domain AYJ57_19135 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_19135 PF10518 TAT (twin-arginine translocation) pathway signal sequence AYJ57_19140 PF00941 FAD binding domain in molybdopterin dehydrogenase AYJ57_19140 PF03450 CO dehydrogenase flavoprotein C-terminal domain AYJ57_19145 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_19145 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AYJ57_19165 PF08402 TOBE domain AYJ57_19165 PF00005 ABC transporter AYJ57_19170 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19175 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19200 PF02515 CoA-transferase family III AYJ57_19205 PF03749 Sugar fermentation stimulation protein RE domain AYJ57_19205 PF17746 SfsA N-terminal OB domain AYJ57_19210 PF05552 Conserved TM helix AYJ57_19210 PF00924 Mechanosensitive ion channel AYJ57_19215 PF00557 Metallopeptidase family M24 AYJ57_19220 PF00171 Aldehyde dehydrogenase family AYJ57_19225 PF00296 Luciferase-like monooxygenase AYJ57_19230 PF12697 Alpha/beta hydrolase family AYJ57_19240 PF03466 LysR substrate binding domain AYJ57_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_19245 PF06426 Serine acetyltransferase, N-terminal AYJ57_19245 PF00132 Bacterial transferase hexapeptide (six repeats) AYJ57_19255 PF01546 Peptidase family M20/M25/M40 AYJ57_19260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_19260 PF03466 LysR substrate binding domain AYJ57_19265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_19265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_19270 PF00171 Aldehyde dehydrogenase family AYJ57_19285 PF00550 Phosphopantetheine attachment site AYJ57_19285 PF08659 KR domain AYJ57_19285 PF02801 Beta-ketoacyl synthase, C-terminal domain AYJ57_19285 PF00109 Beta-ketoacyl synthase, N-terminal domain AYJ57_19285 PF16197 Ketoacyl-synthetase C-terminal extension AYJ57_19285 PF00107 Zinc-binding dehydrogenase AYJ57_19285 PF14765 Polyketide synthase dehydratase AYJ57_19285 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_19285 PF00698 Acyl transferase domain AYJ57_19290 PF00440 Bacterial regulatory proteins, tetR family AYJ57_19290 PF16925 Tetracyclin repressor-like, C-terminal domain AYJ57_19300 PF01575 MaoC like domain AYJ57_19310 PF01263 Aldose 1-epimerase AYJ57_19315 PF01368 DHH family AYJ57_19315 PF02833 DHHA2 domain AYJ57_19325 PF00390 Malic enzyme, N-terminal domain AYJ57_19325 PF01515 Phosphate acetyl/butaryl transferase AYJ57_19325 PF03949 Malic enzyme, NAD binding domain AYJ57_19335 PF00501 AMP-binding enzyme AYJ57_19335 PF16177 Acetyl-coenzyme A synthetase N-terminus AYJ57_19335 PF13193 AMP-binding enzyme C-terminal domain AYJ57_19350 PF01266 FAD dependent oxidoreductase AYJ57_19360 PF17806 Sarcosine oxidase A3 domain AYJ57_19360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_19360 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_19360 PF01571 Aminomethyltransferase folate-binding domain AYJ57_19370 PF00464 Serine hydroxymethyltransferase AYJ57_19375 PF00551 Formyl transferase AYJ57_19380 PF01266 FAD dependent oxidoreductase AYJ57_19385 PF03180 NLPA lipoprotein AYJ57_19390 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19395 PF09383 NIL domain AYJ57_19395 PF00005 ABC transporter AYJ57_19405 PF05199 GMC oxidoreductase AYJ57_19405 PF00732 GMC oxidoreductase AYJ57_19410 PF00171 Aldehyde dehydrogenase family AYJ57_19415 PF00440 Bacterial regulatory proteins, tetR family AYJ57_19415 PF13977 BetI-type transcriptional repressor, C-terminal AYJ57_19420 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AYJ57_19425 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19430 PF00005 ABC transporter AYJ57_19430 PF00571 CBS domain AYJ57_19450 PF00005 ABC transporter AYJ57_19455 PF02405 Permease MlaE AYJ57_19460 PF00356 Bacterial regulatory proteins, lacI family AYJ57_19470 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19480 PF00005 ABC transporter AYJ57_19480 PF08402 TOBE domain AYJ57_19485 PF01156 Inosine-uridine preferring nucleoside hydrolase AYJ57_19490 PF01979 Amidohydrolase family AYJ57_19490 PF13382 Adenine deaminase C-terminal domain AYJ57_19495 PF00480 ROK family AYJ57_19500 PF00141 Peroxidase AYJ57_19505 PF01226 Formate/nitrite transporter AYJ57_19515 PF01266 FAD dependent oxidoreductase AYJ57_19530 PF08031 Berberine and berberine like AYJ57_19530 PF01565 FAD binding domain AYJ57_19535 PF01638 HxlR-like helix-turn-helix AYJ57_19545 PF06693 Protein of unknown function (DUF1190) AYJ57_19550 PF03738 Glutathionylspermidine synthase preATP-grasp AYJ57_19570 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_19575 PF01370 NAD dependent epimerase/dehydratase family AYJ57_19580 PF07729 FCD domain AYJ57_19580 PF00392 Bacterial regulatory proteins, gntR family AYJ57_19585 PF00141 Peroxidase AYJ57_19595 PF00710 Asparaginase, N-terminal AYJ57_19595 PF17763 Glutaminase/Asparaginase C-terminal domain AYJ57_19605 PF07972 NrdI Flavodoxin like AYJ57_19610 PF08343 Ribonucleotide reductase N-terminal AYJ57_19610 PF00317 Ribonucleotide reductase, all-alpha domain AYJ57_19610 PF02867 Ribonucleotide reductase, barrel domain AYJ57_19615 PF00268 Ribonucleotide reductase, small chain AYJ57_19620 PF13618 Gluconate 2-dehydrogenase subunit 3 AYJ57_19625 PF05199 GMC oxidoreductase AYJ57_19625 PF00732 GMC oxidoreductase AYJ57_19630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AYJ57_19630 PF00034 Cytochrome c AYJ57_19635 PF07715 TonB-dependent Receptor Plug Domain AYJ57_19635 PF00593 TonB dependent receptor AYJ57_19640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AYJ57_19640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AYJ57_19650 PF01209 ubiE/COQ5 methyltransferase family AYJ57_19660 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19665 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_19670 PF17912 MalK OB fold domain AYJ57_19670 PF00005 ABC transporter AYJ57_19675 PF17912 MalK OB fold domain AYJ57_19675 PF00005 ABC transporter AYJ57_19680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AYJ57_19680 PF01266 FAD dependent oxidoreductase AYJ57_19685 PF00455 DeoR C terminal sensor domain AYJ57_19685 PF08220 DeoR-like helix-turn-helix domain AYJ57_19690 PF01011 PQQ enzyme repeat AYJ57_19700 PF08521 Two-component sensor kinase N-terminal AYJ57_19700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_19700 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_19705 PF00486 Transcriptional regulatory protein, C terminal AYJ57_19705 PF00072 Response regulator receiver domain AYJ57_19720 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_19725 PF14031 Putative serine dehydratase domain AYJ57_19725 PF01168 Alanine racemase, N-terminal domain AYJ57_19735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_19745 PF17932 Tetracyclin repressor-like, C-terminal domain AYJ57_19745 PF00440 Bacterial regulatory proteins, tetR family AYJ57_19750 PF03435 Saccharopine dehydrogenase NADP binding domain AYJ57_19750 PF08501 Shikimate dehydrogenase substrate binding domain AYJ57_19750 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AYJ57_19755 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_19765 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_19770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AYJ57_19775 PF01156 Inosine-uridine preferring nucleoside hydrolase AYJ57_19780 PF00501 AMP-binding enzyme AYJ57_19780 PF13193 AMP-binding enzyme C-terminal domain AYJ57_19790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_19800 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_19805 PF00701 Dihydrodipicolinate synthetase family AYJ57_19815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AYJ57_19815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AYJ57_19815 PF02770 Acyl-CoA dehydrogenase, middle domain AYJ57_19835 PF00449 Urease alpha-subunit, N-terminal domain AYJ57_19835 PF01979 Amidohydrolase family AYJ57_19840 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_19845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_19850 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AYJ57_19855 PF03328 HpcH/HpaI aldolase/citrate lyase family AYJ57_19860 PF03466 LysR substrate binding domain AYJ57_19860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_19870 PF00701 Dihydrodipicolinate synthetase family AYJ57_19875 PF00701 Dihydrodipicolinate synthetase family AYJ57_19895 PF02515 CoA-transferase family III AYJ57_19900 PF00994 Probable molybdopterin binding domain AYJ57_19900 PF18146 Damage-inducible protein CinA KH domain AYJ57_19900 PF02464 Competence-damaged protein AYJ57_19905 PF00583 Acetyltransferase (GNAT) family AYJ57_19920 PF03466 LysR substrate binding domain AYJ57_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_19925 PF13977 BetI-type transcriptional repressor, C-terminal AYJ57_19925 PF00440 Bacterial regulatory proteins, tetR family AYJ57_19930 PF03466 LysR substrate binding domain AYJ57_19930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_19935 PF00196 Bacterial regulatory proteins, luxR family AYJ57_19935 PF00072 Response regulator receiver domain AYJ57_19940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_19940 PF07730 Histidine kinase AYJ57_19940 PF05384 Sensor protein DegS AYJ57_19945 PF13407 Periplasmic binding protein domain AYJ57_19950 PF00005 ABC transporter AYJ57_19955 PF02653 Branched-chain amino acid transport system / permease component AYJ57_19960 PF02653 Branched-chain amino acid transport system / permease component AYJ57_19965 PF08450 SMP-30/Gluconolactonase/LRE-like region AYJ57_19970 PF01965 DJ-1/PfpI family AYJ57_20020 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_20030 PF16921 Tex protein YqgF-like domain AYJ57_20030 PF09371 Tex-like protein N-terminal domain AYJ57_20030 PF00575 S1 RNA binding domain AYJ57_20030 PF17674 HHH domain AYJ57_20035 PF02615 Malate/L-lactate dehydrogenase AYJ57_20045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYJ57_20045 PF01266 FAD dependent oxidoreductase AYJ57_20050 PF01266 FAD dependent oxidoreductase AYJ57_20050 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AYJ57_20060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_20060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_20070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_20080 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_20095 PF13193 AMP-binding enzyme C-terminal domain AYJ57_20095 PF00501 AMP-binding enzyme AYJ57_20110 PF08402 TOBE domain AYJ57_20110 PF00005 ABC transporter AYJ57_20115 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_20120 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_20125 PF00392 Bacterial regulatory proteins, gntR family AYJ57_20125 PF07702 UTRA domain AYJ57_20130 PF01156 Inosine-uridine preferring nucleoside hydrolase AYJ57_20135 PF03466 LysR substrate binding domain AYJ57_20135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_20150 PF16347 Domain of unknown function (DUF4976) AYJ57_20150 PF00884 Sulfatase AYJ57_20165 PF01979 Amidohydrolase family AYJ57_20185 PF04962 KduI/IolB family AYJ57_20190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AYJ57_20190 PF00205 Thiamine pyrophosphate enzyme, central domain AYJ57_20190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AYJ57_20195 PF00294 pfkB family carbohydrate kinase AYJ57_20200 PF01261 Xylose isomerase-like TIM barrel AYJ57_20210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_20210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_20215 PF01261 Xylose isomerase-like TIM barrel AYJ57_20220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_20220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_20225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_20225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_20230 PF01261 Xylose isomerase-like TIM barrel AYJ57_20235 PF00005 ABC transporter AYJ57_20240 PF02653 Branched-chain amino acid transport system / permease component AYJ57_20245 PF02653 Branched-chain amino acid transport system / permease component AYJ57_20255 PF00356 Bacterial regulatory proteins, lacI family AYJ57_20260 PF07731 Multicopper oxidase AYJ57_20260 PF07732 Multicopper oxidase AYJ57_20290 PF01179 Copper amine oxidase, enzyme domain AYJ57_20290 PF02728 Copper amine oxidase, N3 domain AYJ57_20300 PF03401 Tripartite tricarboxylate transporter family receptor AYJ57_20310 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_20315 PF00884 Sulfatase AYJ57_20315 PF16385 Domain of unknown function AYJ57_20320 PF06434 Aconitate hydratase 2 N-terminus AYJ57_20320 PF11791 Aconitate B N-terminal domain AYJ57_20320 PF00330 Aconitase family (aconitate hydratase) AYJ57_20325 PF00072 Response regulator receiver domain AYJ57_20325 PF00486 Transcriptional regulatory protein, C terminal AYJ57_20375 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_20375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_20380 PF00873 AcrB/AcrD/AcrF family AYJ57_20460 PF00462 Glutaredoxin AYJ57_20465 PF07972 NrdI Flavodoxin like AYJ57_20470 PF02867 Ribonucleotide reductase, barrel domain AYJ57_20470 PF08343 Ribonucleotide reductase N-terminal AYJ57_20470 PF00317 Ribonucleotide reductase, all-alpha domain AYJ57_20475 PF00268 Ribonucleotide reductase, small chain AYJ57_20480 PF00392 Bacterial regulatory proteins, gntR family AYJ57_20480 PF00155 Aminotransferase class I and II AYJ57_20495 PF00005 ABC transporter AYJ57_20495 PF08402 TOBE domain AYJ57_20505 PF01063 Amino-transferase class IV AYJ57_20525 PF00816 H-NS histone family AYJ57_20535 PF12833 Helix-turn-helix domain AYJ57_20535 PF02311 AraC-like ligand binding domain AYJ57_20555 PF00465 Iron-containing alcohol dehydrogenase AYJ57_20570 PF03358 NADPH-dependent FMN reductase AYJ57_20580 PF00857 Isochorismatase family AYJ57_20590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AYJ57_20590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AYJ57_20595 PF00795 Carbon-nitrogen hydrolase AYJ57_20595 PF02540 NAD synthase AYJ57_20650 PF01026 TatD related DNase AYJ57_20655 PF00005 ABC transporter AYJ57_20655 PF00664 ABC transporter transmembrane region AYJ57_20660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AYJ57_20660 PF00529 HlyD membrane-fusion protein of T1SS AYJ57_20690 PF13340 Putative transposase of IS4/5 family (DUF4096) AYJ57_20750 PF03734 L,D-transpeptidase catalytic domain AYJ57_20800 PF13340 Putative transposase of IS4/5 family (DUF4096) AYJ57_20805 PF01609 Transposase DDE domain AYJ57_20830 PF00196 Bacterial regulatory proteins, luxR family AYJ57_20830 PF03472 Autoinducer binding domain AYJ57_20835 PF01548 Transposase AYJ57_20835 PF02371 Transposase IS116/IS110/IS902 family AYJ57_20850 PF01548 Transposase AYJ57_20850 PF02371 Transposase IS116/IS110/IS902 family AYJ57_20860 PF00313 'Cold-shock' DNA-binding domain AYJ57_20865 PF13361 UvrD-like helicase C-terminal domain AYJ57_20865 PF00580 UvrD/REP helicase N-terminal domain AYJ57_20865 PF12462 DNA helicase IV / RNA helicase N terminal AYJ57_20905 PF00665 Integrase core domain AYJ57_20920 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AYJ57_20965 PF13426 PAS domain AYJ57_20965 PF08447 PAS fold AYJ57_20965 PF07536 HWE histidine kinase AYJ57_21015 PF01740 STAS domain AYJ57_21020 PF08678 Rsbr N terminal AYJ57_21020 PF01740 STAS domain AYJ57_21025 PF00072 Response regulator receiver domain AYJ57_21035 PF00474 Sodium:solute symporter family AYJ57_21040 PF11799 impB/mucB/samB family C-terminal domain AYJ57_21040 PF11798 IMS family HHH motif AYJ57_21040 PF00817 impB/mucB/samB family AYJ57_21055 PF00665 Integrase core domain AYJ57_21060 PF07690 Major Facilitator Superfamily AYJ57_21065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_21065 PF03466 LysR substrate binding domain AYJ57_21070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_21075 PF00085 Thioredoxin AYJ57_21085 PF00462 Glutaredoxin AYJ57_21095 PF02899 Phage integrase, N-terminal SAM-like domain AYJ57_21095 PF00589 Phage integrase family AYJ57_21100 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AYJ57_21105 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_21110 PF00155 Aminotransferase class I and II AYJ57_21115 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AYJ57_21120 PF00884 Sulfatase AYJ57_21125 PF01548 Transposase AYJ57_21125 PF02371 Transposase IS116/IS110/IS902 family AYJ57_21135 PF00005 ABC transporter AYJ57_21140 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_21150 PF13407 Periplasmic binding protein domain AYJ57_21150 PF00356 Bacterial regulatory proteins, lacI family AYJ57_21210 PF04962 KduI/IolB family AYJ57_21215 PF00356 Bacterial regulatory proteins, lacI family AYJ57_21225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_21235 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_21255 PF12833 Helix-turn-helix domain AYJ57_21255 PF14525 AraC-binding-like domain AYJ57_21350 PF00155 Aminotransferase class I and II AYJ57_21385 PF00665 Integrase core domain AYJ57_21415 PF00155 Aminotransferase class I and II AYJ57_21485 PF12706 Beta-lactamase superfamily domain AYJ57_21495 PF00149 Calcineurin-like phosphoesterase AYJ57_21555 PF00486 Transcriptional regulatory protein, C terminal AYJ57_21555 PF00072 Response regulator receiver domain AYJ57_21560 PF05443 ROS/MUCR transcriptional regulator protein AYJ57_21585 PF09382 RQC domain AYJ57_21585 PF16124 RecQ zinc-binding AYJ57_21585 PF00570 HRDC domain AYJ57_21585 PF00271 Helicase conserved C-terminal domain AYJ57_21585 PF00270 DEAD/DEAH box helicase AYJ57_21590 PF09382 RQC domain AYJ57_21590 PF16124 RecQ zinc-binding AYJ57_21590 PF00271 Helicase conserved C-terminal domain AYJ57_21590 PF00270 DEAD/DEAH box helicase AYJ57_21590 PF00570 HRDC domain AYJ57_21595 PF05443 ROS/MUCR transcriptional regulator protein AYJ57_21615 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ57_21615 PF00691 OmpA family AYJ57_21620 PF17768 RecJ OB domain AYJ57_21620 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AYJ57_21620 PF02272 DHHA1 domain AYJ57_21620 PF01368 DHH family AYJ57_21645 PF13614 AAA domain AYJ57_21645 PF00376 MerR family regulatory protein AYJ57_21695 PF01527 Transposase AYJ57_21700 PF01548 Transposase AYJ57_21700 PF02371 Transposase IS116/IS110/IS902 family AYJ57_21720 PF01751 Toprim domain AYJ57_21720 PF01131 DNA topoisomerase AYJ57_21725 PF00491 Arginase family AYJ57_21730 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_21735 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_21740 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_21745 PF00005 ABC transporter AYJ57_21750 PF00491 Arginase family AYJ57_21760 PF02562 PhoH-like protein AYJ57_21770 PF00873 AcrB/AcrD/AcrF family AYJ57_21810 PF02631 RecX family AYJ57_21830 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AYJ57_21830 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AYJ57_21850 PF01037 Lrp/AsnC ligand binding domain AYJ57_21865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_21865 PF03466 LysR substrate binding domain AYJ57_21870 PF13411 MerR HTH family regulatory protein AYJ57_21905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_21905 PF03466 LysR substrate binding domain AYJ57_21925 PF00551 Formyl transferase AYJ57_21925 PF01370 NAD dependent epimerase/dehydratase family AYJ57_21925 PF02911 Formyl transferase, C-terminal domain AYJ57_21940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_21940 PF03466 LysR substrate binding domain AYJ57_21945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_21950 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_21960 PF00005 ABC transporter AYJ57_21960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_21965 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AYJ57_21965 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AYJ57_21965 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal AYJ57_21980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_21980 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_21990 PF01266 FAD dependent oxidoreductase AYJ57_22005 PF01618 MotA/TolQ/ExbB proton channel family AYJ57_22035 PF13677 Membrane MotB of proton-channel complex MotA/MotB AYJ57_22035 PF00691 OmpA family AYJ57_22045 PF04539 Sigma-70 region 3 AYJ57_22045 PF00140 Sigma-70 factor, region 1.2 AYJ57_22045 PF04542 Sigma-70 region 2 AYJ57_22045 PF04545 Sigma-70, region 4 AYJ57_22065 PF02107 Flagellar L-ring protein AYJ57_22075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ57_22075 PF00460 Flagella basal body rod protein AYJ57_22080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ57_22080 PF00460 Flagella basal body rod protein AYJ57_22090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ57_22090 PF00460 Flagella basal body rod protein AYJ57_22090 PF07559 Flagellar basal body protein FlaE AYJ57_22105 PF00072 Response regulator receiver domain AYJ57_22105 PF00486 Transcriptional regulatory protein, C terminal AYJ57_22110 PF02119 Flagellar P-ring protein AYJ57_22125 PF00669 Bacterial flagellin N-terminal helical region AYJ57_22125 PF00700 Bacterial flagellin C-terminal helical region AYJ57_22135 PF07378 Flagellar protein FlbT AYJ57_22145 PF14842 FliG N-terminal domain AYJ57_22145 PF01706 FliG C-terminal domain AYJ57_22145 PF14841 FliG middle domain AYJ57_22150 PF00813 FliP family AYJ57_22155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AYJ57_22165 PF01514 Secretory protein of YscJ/FliF family AYJ57_22165 PF08345 Flagellar M-ring protein C-terminal AYJ57_22190 PF00664 ABC transporter transmembrane region AYJ57_22190 PF00005 ABC transporter AYJ57_22195 PF07715 TonB-dependent Receptor Plug Domain AYJ57_22195 PF00593 TonB dependent receptor AYJ57_22205 PF02633 Creatinine amidohydrolase AYJ57_22210 PF00005 ABC transporter AYJ57_22215 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_22230 PF09084 NMT1/THI5 like AYJ57_22240 PF08361 MAATS-type transcriptional repressor, C-terminal region AYJ57_22240 PF00440 Bacterial regulatory proteins, tetR family AYJ57_22255 PF01063 Amino-transferase class IV AYJ57_22260 PF07729 FCD domain AYJ57_22260 PF00392 Bacterial regulatory proteins, gntR family AYJ57_22265 PF00202 Aminotransferase class-III AYJ57_22275 PF03466 LysR substrate binding domain AYJ57_22275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_22280 PF00171 Aldehyde dehydrogenase family AYJ57_22290 PF00551 Formyl transferase AYJ57_22300 PF01571 Aminomethyltransferase folate-binding domain AYJ57_22300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_22300 PF08669 Glycine cleavage T-protein C-terminal barrel domain AYJ57_22300 PF17806 Sarcosine oxidase A3 domain AYJ57_22305 PF04267 Sarcosine oxidase, delta subunit family AYJ57_22310 PF01266 FAD dependent oxidoreductase AYJ57_22315 PF01965 DJ-1/PfpI family AYJ57_22315 PF12833 Helix-turn-helix domain AYJ57_22320 PF03466 LysR substrate binding domain AYJ57_22320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_22325 PF07883 Cupin domain AYJ57_22335 PF00857 Isochorismatase family AYJ57_22335 PF00550 Phosphopantetheine attachment site AYJ57_22340 PF00425 chorismate binding enzyme AYJ57_22345 PF17912 MalK OB fold domain AYJ57_22345 PF00005 ABC transporter AYJ57_22350 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_22360 PF01547 Bacterial extracellular solute-binding protein AYJ57_22365 PF00072 Response regulator receiver domain AYJ57_22365 PF00486 Transcriptional regulatory protein, C terminal AYJ57_22370 PF00672 HAMP domain AYJ57_22370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_22370 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_22375 PF01761 3-dehydroquinate synthase AYJ57_22400 PF01026 TatD related DNase AYJ57_22410 PF13360 PQQ-like domain AYJ57_22425 PF13091 PLD-like domain AYJ57_22430 PF05853 beta-keto acid cleavage enzyme AYJ57_22440 PF00171 Aldehyde dehydrogenase family AYJ57_22445 PF01757 Acyltransferase family AYJ57_22455 PF10397 Adenylosuccinate lyase C-terminus AYJ57_22455 PF00206 Lyase AYJ57_22460 PF00775 Dioxygenase AYJ57_22465 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AYJ57_22465 PF00775 Dioxygenase AYJ57_22475 PF12146 Serine aminopeptidase, S33 AYJ57_22480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_22480 PF03466 LysR substrate binding domain AYJ57_22485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_22485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_22490 PF02329 Histidine carboxylase PI chain AYJ57_22500 PF00211 Adenylate and Guanylate cyclase catalytic domain AYJ57_22500 PF13191 AAA ATPase domain AYJ57_22510 PF00583 Acetyltransferase (GNAT) family AYJ57_22515 PF00202 Aminotransferase class-III AYJ57_22520 PF06339 Ectoine synthase AYJ57_22525 PF00696 Amino acid kinase family AYJ57_22525 PF13840 ACT domain AYJ57_22530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AYJ57_22535 PF03435 Saccharopine dehydrogenase NADP binding domain AYJ57_22535 PF16653 Saccharopine dehydrogenase C-terminal domain AYJ57_22550 PF13614 AAA domain AYJ57_22565 PF01841 Transglutaminase-like superfamily AYJ57_22580 PF00483 Nucleotidyl transferase AYJ57_22580 PF01050 Mannose-6-phosphate isomerase AYJ57_22585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AYJ57_22585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AYJ57_22585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AYJ57_22585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AYJ57_22595 PF13439 Glycosyltransferase Family 4 AYJ57_22595 PF00534 Glycosyl transferases group 1 AYJ57_22620 PF02706 Chain length determinant protein AYJ57_22620 PF13807 G-rich domain on putative tyrosine kinase AYJ57_22620 PF13614 AAA domain AYJ57_22640 PF01695 IstB-like ATP binding protein AYJ57_22645 PF02397 Bacterial sugar transferase AYJ57_22655 PF18269 T3SS EscN ATPase C-terminal domain AYJ57_22655 PF02874 ATP synthase alpha/beta family, beta-barrel domain AYJ57_22655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AYJ57_22660 PF00460 Flagella basal body rod protein AYJ57_22665 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AYJ57_22665 PF00460 Flagella basal body rod protein AYJ57_22670 PF02049 Flagellar hook-basal body complex protein FliE AYJ57_22675 PF01313 Bacterial export proteins, family 3 AYJ57_22685 PF00771 FHIPEP family AYJ57_22690 PF01311 Bacterial export proteins, family 1 AYJ57_22695 PF01312 FlhB HrpN YscU SpaS Family AYJ57_22700 PF03971 Monomeric isocitrate dehydrogenase AYJ57_22720 PF00115 Cytochrome C and Quinol oxidase polypeptide I AYJ57_22735 PF00034 Cytochrome c AYJ57_22740 PF00356 Bacterial regulatory proteins, lacI family AYJ57_22750 PF10996 Beta-Casp domain AYJ57_22750 PF00753 Metallo-beta-lactamase superfamily AYJ57_22750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AYJ57_22755 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_22765 PF00005 ABC transporter AYJ57_22765 PF17912 MalK OB fold domain AYJ57_22770 PF00576 HIUase/Transthyretin family AYJ57_22775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AYJ57_22775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AYJ57_22785 PF01494 FAD binding domain AYJ57_22790 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_22795 PF00005 ABC transporter AYJ57_22800 PF12849 PBP superfamily domain AYJ57_22815 PF00072 Response regulator receiver domain AYJ57_22815 PF00158 Sigma-54 interaction domain AYJ57_22815 PF02954 Bacterial regulatory protein, Fis family AYJ57_22820 PF00034 Cytochrome c AYJ57_22825 PF01292 Prokaryotic cytochrome b561 AYJ57_22830 PF13247 4Fe-4S dicluster domain AYJ57_22835 PF00384 Molybdopterin oxidoreductase AYJ57_22835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYJ57_22835 PF01568 Molydopterin dinucleotide binding domain AYJ57_22870 PF10609 NUBPL iron-transfer P-loop NTPase AYJ57_22885 PF00989 PAS fold AYJ57_22885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_22885 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_22890 PF12838 4Fe-4S dicluster domain AYJ57_22890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AYJ57_22890 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AYJ57_22890 PF00384 Molybdopterin oxidoreductase AYJ57_22890 PF01568 Molydopterin dinucleotide binding domain AYJ57_22895 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AYJ57_22895 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AYJ57_22895 PF10531 SLBB domain AYJ57_22900 PF01206 Sulfurtransferase TusA AYJ57_22910 PF00994 Probable molybdopterin binding domain AYJ57_22910 PF03454 MoeA C-terminal region (domain IV) AYJ57_22910 PF03453 MoeA N-terminal region (domain I and II) AYJ57_22915 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AYJ57_22920 PF12804 MobA-like NTP transferase domain AYJ57_22925 PF02634 FdhD/NarQ family AYJ57_22945 PF00107 Zinc-binding dehydrogenase AYJ57_22945 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_22950 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_22960 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_22965 PF07729 FCD domain AYJ57_22965 PF00392 Bacterial regulatory proteins, gntR family AYJ57_22970 PF03786 D-mannonate dehydratase (UxuA) AYJ57_22975 PF08125 Mannitol dehydrogenase C-terminal domain AYJ57_22975 PF01232 Mannitol dehydrogenase Rossmann domain AYJ57_22985 PF03600 Citrate transporter AYJ57_22985 PF02080 TrkA-C domain AYJ57_22990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AYJ57_22990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_22995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_22995 PF03466 LysR substrate binding domain AYJ57_23000 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_23010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_23015 PF01370 NAD dependent epimerase/dehydratase family AYJ57_23015 PF00551 Formyl transferase AYJ57_23015 PF02911 Formyl transferase, C-terminal domain AYJ57_23030 PF03466 LysR substrate binding domain AYJ57_23030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_23035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_23040 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23050 PF00005 ABC transporter AYJ57_23055 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal AYJ57_23055 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AYJ57_23055 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AYJ57_23070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_23070 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_23085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23085 PF00005 ABC transporter AYJ57_23090 PF00005 ABC transporter AYJ57_23090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23095 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_23110 PF00392 Bacterial regulatory proteins, gntR family AYJ57_23110 PF07729 FCD domain AYJ57_23135 PF00535 Glycosyl transferase family 2 AYJ57_23140 PF00535 Glycosyl transferase family 2 AYJ57_23155 PF02397 Bacterial sugar transferase AYJ57_23165 PF01757 Acyltransferase family AYJ57_23180 PF00722 Glycosyl hydrolases family 16 AYJ57_23220 PF00722 Glycosyl hydrolases family 16 AYJ57_23245 PF00535 Glycosyl transferase family 2 AYJ57_23255 PF04030 D-arabinono-1,4-lactone oxidase AYJ57_23255 PF01565 FAD binding domain AYJ57_23265 PF01040 UbiA prenyltransferase family AYJ57_23270 PF03601 Conserved hypothetical protein 698 AYJ57_23275 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_23280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_23290 PF01613 Flavin reductase like domain AYJ57_23295 PF00248 Aldo/keto reductase family AYJ57_23300 PF00296 Luciferase-like monooxygenase AYJ57_23310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AYJ57_23310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AYJ57_23315 PF01799 [2Fe-2S] binding domain AYJ57_23315 PF00111 2Fe-2S iron-sulfur cluster binding domain AYJ57_23320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AYJ57_23330 PF07715 TonB-dependent Receptor Plug Domain AYJ57_23330 PF00593 TonB dependent receptor AYJ57_23345 PF01209 ubiE/COQ5 methyltransferase family AYJ57_23360 PF00580 UvrD/REP helicase N-terminal domain AYJ57_23360 PF13361 UvrD-like helicase C-terminal domain AYJ57_23365 PF00899 ThiF family AYJ57_23365 PF00581 Rhodanese-like domain AYJ57_23370 PF02581 Thiamine monophosphate synthase AYJ57_23375 PF05690 Thiazole biosynthesis protein ThiG AYJ57_23385 PF01266 FAD dependent oxidoreductase AYJ57_23390 PF02445 Quinolinate synthetase A protein AYJ57_23395 PF02910 Fumarate reductase flavoprotein C-term AYJ57_23395 PF00890 FAD binding domain AYJ57_23400 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AYJ57_23400 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AYJ57_23405 PF01556 DnaJ C terminal domain AYJ57_23405 PF00226 DnaJ domain AYJ57_23415 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_23425 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_23445 PF01546 Peptidase family M20/M25/M40 AYJ57_23450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_23450 PF01842 ACT domain AYJ57_23450 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_23455 PF00392 Bacterial regulatory proteins, gntR family AYJ57_23455 PF07729 FCD domain AYJ57_23460 PF02626 Carboxyltransferase domain, subdomain A and B AYJ57_23465 PF02682 Carboxyltransferase domain, subdomain C and D AYJ57_23470 PF03746 LamB/YcsF family AYJ57_23475 PF01063 Amino-transferase class IV AYJ57_23485 PF00701 Dihydrodipicolinate synthetase family AYJ57_23500 PF07683 Cobalamin synthesis protein cobW C-terminal domain AYJ57_23500 PF02492 CobW/HypB/UreG, nucleotide-binding domain AYJ57_23510 PF00356 Bacterial regulatory proteins, lacI family AYJ57_23510 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AYJ57_23515 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_23530 PF00920 Dehydratase family AYJ57_23535 PF00701 Dihydrodipicolinate synthetase family AYJ57_23540 PF00171 Aldehyde dehydrogenase family AYJ57_23545 PF03737 Aldolase/RraA AYJ57_23550 PF00557 Metallopeptidase family M24 AYJ57_23555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23555 PF00005 ABC transporter AYJ57_23560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23560 PF00005 ABC transporter AYJ57_23570 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_23585 PF01042 Endoribonuclease L-PSP AYJ57_23595 PF00005 ABC transporter AYJ57_23610 PF02702 Osmosensitive K+ channel His kinase sensor domain AYJ57_23610 PF13492 GAF domain AYJ57_23610 PF13493 Domain of unknown function (DUF4118) AYJ57_23610 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_23610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_23615 PF00072 Response regulator receiver domain AYJ57_23615 PF00486 Transcriptional regulatory protein, C terminal AYJ57_23620 PF08042 PqqA family AYJ57_23625 PF12706 Beta-lactamase superfamily domain AYJ57_23630 PF03070 TENA/THI-4/PQQC family AYJ57_23635 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AYJ57_23640 PF04055 Radical SAM superfamily AYJ57_23640 PF13186 Iron-sulfur cluster-binding domain AYJ57_23645 PF13614 AAA domain AYJ57_23650 PF02195 ParB-like nuclease domain AYJ57_23650 PF07506 RepB plasmid partitioning protein AYJ57_23655 PF03428 Replication protein C N-terminal domain AYJ57_23655 PF11800 Replication protein C C-terminal region AYJ57_23665 PF04828 Glutathione-dependent formaldehyde-activating enzyme AYJ57_23670 PF00196 Bacterial regulatory proteins, luxR family AYJ57_23670 PF00072 Response regulator receiver domain AYJ57_23680 PF00512 His Kinase A (phospho-acceptor) domain AYJ57_23680 PF16736 Single Cache-like AYJ57_23680 PF00989 PAS fold AYJ57_23680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AYJ57_23710 PF08240 Alcohol dehydrogenase GroES-like domain AYJ57_23710 PF00107 Zinc-binding dehydrogenase AYJ57_23715 PF00756 Putative esterase AYJ57_23720 PF00034 Cytochrome c AYJ57_23725 PF13360 PQQ-like domain AYJ57_23780 PF00005 ABC transporter AYJ57_23795 PF07804 HipA-like C-terminal domain AYJ57_23795 PF13657 HipA N-terminal domain AYJ57_23800 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AYJ57_23805 PF07690 Major Facilitator Superfamily AYJ57_23815 PF13404 AsnC-type helix-turn-helix domain AYJ57_23815 PF01037 Lrp/AsnC ligand binding domain AYJ57_23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_23820 PF03466 LysR substrate binding domain AYJ57_23825 PF01177 Asp/Glu/Hydantoin racemase AYJ57_23830 PF01979 Amidohydrolase family AYJ57_23830 PF00449 Urease alpha-subunit, N-terminal domain AYJ57_23835 PF00795 Carbon-nitrogen hydrolase AYJ57_23840 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23845 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23850 PF00005 ABC transporter AYJ57_23855 PF00497 Bacterial extracellular solute-binding proteins, family 3 AYJ57_23865 PF00149 Calcineurin-like phosphoesterase AYJ57_23870 PF01042 Endoribonuclease L-PSP AYJ57_23875 PF01425 Amidase AYJ57_23880 PF00291 Pyridoxal-phosphate dependent enzyme AYJ57_23885 PF01925 Sulfite exporter TauE/SafE AYJ57_23890 PF07687 Peptidase dimerisation domain AYJ57_23890 PF01546 Peptidase family M20/M25/M40 AYJ57_23900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23900 PF00005 ABC transporter AYJ57_23905 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23910 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_23920 PF07729 FCD domain AYJ57_23920 PF00392 Bacterial regulatory proteins, gntR family AYJ57_23925 PF13977 BetI-type transcriptional repressor, C-terminal AYJ57_23925 PF00440 Bacterial regulatory proteins, tetR family AYJ57_23940 PF00005 ABC transporter AYJ57_23945 PF00296 Luciferase-like monooxygenase AYJ57_23950 PF02633 Creatinine amidohydrolase AYJ57_23965 PF11992 Domain of unknown function (DUF3488) AYJ57_23965 PF01841 Transglutaminase-like superfamily AYJ57_23965 PF13559 Domain of unknown function (DUF4129) AYJ57_23970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_23970 PF03466 LysR substrate binding domain AYJ57_23975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_23980 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_23985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_23985 PF00005 ABC transporter AYJ57_24005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_24010 PF00005 ABC transporter AYJ57_24010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_24015 PF00005 ABC transporter AYJ57_24015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_24020 PF12911 N-terminal TM domain of oligopeptide transport permease C AYJ57_24020 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24025 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24035 PF03466 LysR substrate binding domain AYJ57_24035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24040 PF00970 Oxidoreductase FAD-binding domain AYJ57_24040 PF00042 Globin AYJ57_24040 PF00175 Oxidoreductase NAD-binding domain AYJ57_24050 PF01979 Amidohydrolase family AYJ57_24055 PF01979 Amidohydrolase family AYJ57_24060 PF00005 ABC transporter AYJ57_24065 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24075 PF00392 Bacterial regulatory proteins, gntR family AYJ57_24075 PF07729 FCD domain AYJ57_24085 PF00005 ABC transporter AYJ57_24085 PF08402 TOBE domain AYJ57_24090 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24095 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24105 PF01425 Amidase AYJ57_24110 PF01177 Asp/Glu/Hydantoin racemase AYJ57_24120 PF01979 Amidohydrolase family AYJ57_24120 PF00449 Urease alpha-subunit, N-terminal domain AYJ57_24130 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_24140 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_24145 PF01425 Amidase AYJ57_24150 PF02896 PEP-utilising enzyme, TIM barrel domain AYJ57_24150 PF00391 PEP-utilising enzyme, mobile domain AYJ57_24150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AYJ57_24160 PF05853 beta-keto acid cleavage enzyme AYJ57_24165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AYJ57_24165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AYJ57_24170 PF00005 ABC transporter AYJ57_24175 PF02653 Branched-chain amino acid transport system / permease component AYJ57_24175 PF11862 Domain of unknown function (DUF3382) AYJ57_24195 PF00873 AcrB/AcrD/AcrF family AYJ57_24220 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_24230 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_24235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24235 PF03466 LysR substrate binding domain AYJ57_24240 PF13454 FAD-NAD(P)-binding AYJ57_24245 PF01244 Membrane dipeptidase (Peptidase family M19) AYJ57_24250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_24250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_24255 PF02653 Branched-chain amino acid transport system / permease component AYJ57_24265 PF03466 LysR substrate binding domain AYJ57_24265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24270 PF07690 Major Facilitator Superfamily AYJ57_24310 PF13378 Enolase C-terminal domain-like AYJ57_24315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24315 PF03466 LysR substrate binding domain AYJ57_24320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24320 PF03466 LysR substrate binding domain AYJ57_24325 PF03401 Tripartite tricarboxylate transporter family receptor AYJ57_24330 PF01970 Tripartite tricarboxylate transporter TctA family AYJ57_24355 PF02028 BCCT, betaine/carnitine/choline family transporter AYJ57_24360 PF13454 FAD-NAD(P)-binding AYJ57_24365 PF00128 Alpha amylase, catalytic domain AYJ57_24370 PF00128 Alpha amylase, catalytic domain AYJ57_24370 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ57_24375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AYJ57_24375 PF00128 Alpha amylase, catalytic domain AYJ57_24380 PF00483 Nucleotidyl transferase AYJ57_24385 PF02322 Cytochrome bd terminal oxidase subunit II AYJ57_24390 PF01654 Cytochrome bd terminal oxidase subunit I AYJ57_24400 PF13426 PAS domain AYJ57_24400 PF08447 PAS fold AYJ57_24400 PF07536 HWE histidine kinase AYJ57_24405 PF01070 FMN-dependent dehydrogenase AYJ57_24410 PF00248 Aldo/keto reductase family AYJ57_24435 PF07859 alpha/beta hydrolase fold AYJ57_24440 PF00854 POT family AYJ57_24445 PF01040 UbiA prenyltransferase family AYJ57_24455 PF01565 FAD binding domain AYJ57_24455 PF04030 D-arabinono-1,4-lactone oxidase AYJ57_24475 PF13614 AAA domain AYJ57_24490 PF09339 IclR helix-turn-helix domain AYJ57_24490 PF01614 Bacterial transcriptional regulator AYJ57_24500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AYJ57_24500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AYJ57_24505 PF03928 Haem-degrading AYJ57_24515 PF03480 Bacterial extracellular solute-binding protein, family 7 AYJ57_24520 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_24530 PF00171 Aldehyde dehydrogenase family AYJ57_24535 PF00920 Dehydratase family AYJ57_24550 PF00860 Permease family AYJ57_24560 PF07690 Major Facilitator Superfamily AYJ57_24565 PF00005 ABC transporter AYJ57_24570 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24590 PF00392 Bacterial regulatory proteins, gntR family AYJ57_24590 PF07729 FCD domain AYJ57_24595 PF17042 Nucleotide-binding C-terminal domain AYJ57_24595 PF07005 Sugar-binding N-terminal domain AYJ57_24600 PF00465 Iron-containing alcohol dehydrogenase AYJ57_24610 PF03401 Tripartite tricarboxylate transporter family receptor AYJ57_24620 PF00701 Dihydrodipicolinate synthetase family AYJ57_24625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_24625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AYJ57_24625 PF01842 ACT domain AYJ57_24630 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AYJ57_24650 PF00005 ABC transporter AYJ57_24655 PF02653 Branched-chain amino acid transport system / permease component AYJ57_24665 PF04115 Ureidoglycolate lyase AYJ57_24670 PF00392 Bacterial regulatory proteins, gntR family AYJ57_24670 PF07729 FCD domain AYJ57_24680 PF00156 Phosphoribosyl transferase domain AYJ57_24680 PF01738 Dienelactone hydrolase family AYJ57_24690 PF01979 Amidohydrolase family AYJ57_24695 PF03459 TOBE domain AYJ57_24695 PF00005 ABC transporter AYJ57_24695 PF17912 MalK OB fold domain AYJ57_24700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AYJ57_24705 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24710 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24720 PF00480 ROK family AYJ57_24720 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AYJ57_24725 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AYJ57_24750 PF01032 FecCD transport family AYJ57_24755 PF00005 ABC transporter AYJ57_24765 PF01593 Flavin containing amine oxidoreductase AYJ57_24780 PF07687 Peptidase dimerisation domain AYJ57_24780 PF01546 Peptidase family M20/M25/M40 AYJ57_24785 PF18014 Acetyltransferase (GNAT) domain AYJ57_24785 PF13673 Acetyltransferase (GNAT) domain AYJ57_24790 PF00202 Aminotransferase class-III AYJ57_24795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AYJ57_24805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_24810 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_24820 PF00005 ABC transporter AYJ57_24825 PF01037 Lrp/AsnC ligand binding domain AYJ57_24830 PF01266 FAD dependent oxidoreductase AYJ57_24835 PF01266 FAD dependent oxidoreductase AYJ57_24840 PF03466 LysR substrate binding domain AYJ57_24840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24845 PF05378 Hydantoinase/oxoprolinase N-terminal region AYJ57_24845 PF01968 Hydantoinase/oxoprolinase AYJ57_24860 PF07992 Pyridine nucleotide-disulphide oxidoreductase AYJ57_24860 PF04324 BFD-like [2Fe-2S] binding domain AYJ57_24865 PF00171 Aldehyde dehydrogenase family AYJ57_24870 PF00180 Isocitrate/isopropylmalate dehydrogenase AYJ57_24875 PF00171 Aldehyde dehydrogenase family AYJ57_24880 PF01425 Amidase AYJ57_24890 PF01425 Amidase AYJ57_24900 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_24905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AYJ57_24910 PF00005 ABC transporter AYJ57_24910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_24915 PF00005 ABC transporter AYJ57_24915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AYJ57_24920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_24920 PF03466 LysR substrate binding domain AYJ57_24935 PF00665 Integrase core domain AYJ57_24935 PF13936 Helix-turn-helix domain AYJ57_24940 PF05426 Alginate lyase AYJ57_24955 PF16824 C-terminal carbohydrate-binding module AYJ57_24955 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX AYJ57_24965 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX AYJ57_24970 PF03062 MBOAT, membrane-bound O-acyltransferase family AYJ57_24980 PF01050 Mannose-6-phosphate isomerase AYJ57_24980 PF00483 Nucleotidyl transferase AYJ57_24995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ57_24995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ57_24995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ57_25000 PF00072 Response regulator receiver domain AYJ57_25000 PF00196 Bacterial regulatory proteins, luxR family AYJ57_25015 PF13649 Methyltransferase domain AYJ57_25015 PF08241 Methyltransferase domain AYJ57_25020 PF03793 PASTA domain AYJ57_25020 PF00069 Protein kinase domain AYJ57_25035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AYJ57_25050 PF01979 Amidohydrolase family AYJ57_25060 PF05199 GMC oxidoreductase AYJ57_25060 PF00732 GMC oxidoreductase AYJ57_25075 PF00034 Cytochrome c AYJ57_25080 PF07732 Multicopper oxidase AYJ57_25080 PF07731 Multicopper oxidase AYJ57_25085 PF01476 LysM domain AYJ57_25085 PF03734 L,D-transpeptidase catalytic domain AYJ57_25090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_25090 PF03466 LysR substrate binding domain AYJ57_25100 PF01717 Cobalamin-independent synthase, Catalytic domain AYJ57_25100 PF08267 Cobalamin-independent synthase, N-terminal domain AYJ57_25110 PF00817 impB/mucB/samB family AYJ57_25110 PF11798 IMS family HHH motif AYJ57_25110 PF11799 impB/mucB/samB family C-terminal domain AYJ57_25115 PF01638 HxlR-like helix-turn-helix AYJ57_25150 PF00437 Type II/IV secretion system protein AYJ57_25175 PF00263 Bacterial type II and III secretion system protein AYJ57_25175 PF04972 BON domain AYJ57_25175 PF13629 Pilus formation protein N terminal region AYJ57_25205 PF03466 LysR substrate binding domain AYJ57_25205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AYJ57_25215 PF00464 Serine hydroxymethyltransferase AYJ57_25220 PF00005 ABC transporter AYJ57_25220 PF08402 TOBE domain AYJ57_25225 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_25230 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_25245 PF00528 Binding-protein-dependent transport system inner membrane component AYJ57_25250 PF00005 ABC transporter AYJ57_25280 PF01507 Phosphoadenosine phosphosulfate reductase family AYJ57_25335 PF03275 UDP-galactopyranose mutase AYJ57_25350 PF13439 Glycosyltransferase Family 4 AYJ57_25350 PF00534 Glycosyl transferases group 1 AYJ57_25355 PF00005 ABC transporter AYJ57_25365 PF01061 ABC-2 type transporter AYJ57_25390 PF13614 AAA domain AYJ57_25390 PF00376 MerR family regulatory protein AYJ57_25395 PF10134 Replication initiator protein A AYJ57_25415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AYJ57_25415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AYJ57_25415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AYJ57_25435 PF00793 DAHP synthetase I family AYJ57_25440 PF02348 Cytidylyltransferase AYJ57_25445 PF00483 Nucleotidyl transferase