AYJ57_00045	PWY-5101	L-isoleucine biosynthesis II
AYJ57_00045	PWY-5103	L-isoleucine biosynthesis III
AYJ57_00045	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_00045	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYJ57_00045	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYJ57_00045	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYJ57_00045	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_00055	PWY-5101	L-isoleucine biosynthesis II
AYJ57_00055	PWY-5103	L-isoleucine biosynthesis III
AYJ57_00055	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_00055	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AYJ57_00055	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AYJ57_00055	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AYJ57_00055	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_00090	PWY-2201	folate transformations I
AYJ57_00090	PWY-3841	folate transformations II
AYJ57_00090	PWY-7977	AYJ57_00090
AYJ57_00105	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYJ57_00105	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYJ57_00260	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYJ57_00265	PWY-3081	L-lysine biosynthesis V
AYJ57_00265	PWY-6871	3-methylbutanol biosynthesis
AYJ57_00265	PWY-7710	AYJ57_00265
AYJ57_00315	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_00395	PWY-3661	glycine betaine degradation I
AYJ57_00395	PWY-4722	creatinine degradation II
AYJ57_00410	PWY-3661	glycine betaine degradation I
AYJ57_00410	PWY-4722	creatinine degradation II
AYJ57_00415	PWY-3661	glycine betaine degradation I
AYJ57_00415	PWY-4722	creatinine degradation II
AYJ57_00420	PWY-3661	glycine betaine degradation I
AYJ57_00420	PWY-4722	creatinine degradation II
AYJ57_00430	PWY-6854	ethylene biosynthesis III (microbes)
AYJ57_00435	PWY-5194	siroheme biosynthesis
AYJ57_00435	PWY-5196	factor 430 biosynthesis
AYJ57_00435	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AYJ57_00545	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYJ57_00550	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYJ57_00550	PWY-6855	chitin degradation I (archaea)
AYJ57_00550	PWY-6906	chitin derivatives degradation
AYJ57_00555	PWY-3801	sucrose degradation II (sucrose synthase)
AYJ57_00555	PWY-5054	sorbitol biosynthesis I
AYJ57_00555	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AYJ57_00555	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYJ57_00555	PWY-5659	GDP-mannose biosynthesis
AYJ57_00555	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_00555	PWY-621	sucrose degradation III (sucrose invertase)
AYJ57_00555	PWY-622	starch biosynthesis
AYJ57_00555	PWY-6981	chitin biosynthesis
AYJ57_00555	PWY-6992	1,5-anhydrofructose degradation
AYJ57_00555	PWY-7238	sucrose biosynthesis II
AYJ57_00555	PWY-7347	sucrose biosynthesis III
AYJ57_00555	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYJ57_00610	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_00610	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_00610	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_00610	PWY-7003	glycerol degradation to butanol
AYJ57_00625	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_00625	PWY-5723	Rubisco shunt
AYJ57_00625	PWY-6891	thiazole biosynthesis II (Bacillus)
AYJ57_00625	PWY-6892	thiazole biosynthesis I (E. coli)
AYJ57_00625	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_00625	PWY-7560	methylerythritol phosphate pathway II
AYJ57_00640	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_00640	PWY-1622	formaldehyde assimilation I (serine pathway)
AYJ57_00640	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYJ57_00640	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_00640	PWY-5723	Rubisco shunt
AYJ57_00640	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_00640	PWY-6886	1-butanol autotrophic biosynthesis
AYJ57_00640	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_00640	PWY-7003	glycerol degradation to butanol
AYJ57_00640	PWY-7124	ethylene biosynthesis V (engineered)
AYJ57_00640	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYJ57_00655	PWY-6749	CMP-legionaminate biosynthesis I
AYJ57_00660	PWY-5941	glycogen degradation II (eukaryotic)
AYJ57_00660	PWY-6724	starch degradation II
AYJ57_00660	PWY-6737	starch degradation V
AYJ57_00660	PWY-7238	sucrose biosynthesis II
AYJ57_00670	PWY-622	starch biosynthesis
AYJ57_00675	PWY-622	starch biosynthesis
AYJ57_00675	PWY-7902	AYJ57_00675
AYJ57_00680	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AYJ57_00680	PWY-622	starch biosynthesis
AYJ57_00680	PWY-7900	AYJ57_00680
AYJ57_00685	PWY-5941	glycogen degradation II (eukaryotic)
AYJ57_00685	PWY-6731	starch degradation III
AYJ57_00685	PWY-6737	starch degradation V
AYJ57_00685	PWY-7238	sucrose biosynthesis II
AYJ57_00690	PWY-2722	trehalose degradation IV
AYJ57_00690	PWY-2723	trehalose degradation V
AYJ57_00690	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYJ57_00690	PWY-5661	GDP-glucose biosynthesis
AYJ57_00690	PWY-621	sucrose degradation III (sucrose invertase)
AYJ57_00690	PWY-7238	sucrose biosynthesis II
AYJ57_00690	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYJ57_00695	PWY-3121	linamarin degradation
AYJ57_00695	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AYJ57_00695	PWY-6002	lotaustralin degradation
AYJ57_00695	PWY-6788	cellulose degradation II (fungi)
AYJ57_00695	PWY-7091	linustatin bioactivation
AYJ57_00695	PWY-7092	neolinustatin bioactivation
AYJ57_00695	PWY-7913	AYJ57_00695
AYJ57_00785	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_00785	PWY-6549	L-glutamine biosynthesis III
AYJ57_00785	PWY-6728	methylaspartate cycle
AYJ57_00785	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_00785	PWY-7124	ethylene biosynthesis V (engineered)
AYJ57_00785	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_00785	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYJ57_00845	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_00845	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_00845	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_00850	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_00850	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYJ57_00890	PWY-5667	CDP-diacylglycerol biosynthesis I
AYJ57_00890	PWY-5981	CDP-diacylglycerol biosynthesis III
AYJ57_00890	PWY-7817	AYJ57_00890
AYJ57_00895	PWY-7560	methylerythritol phosphate pathway II
AYJ57_00915	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYJ57_00915	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYJ57_00915	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYJ57_00915	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYJ57_00915	PWY-6113	superpathway of mycolate biosynthesis
AYJ57_00915	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYJ57_00915	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_00915	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYJ57_00915	PWY-7663	gondoate biosynthesis (anaerobic)
AYJ57_00915	PWY-7664	oleate biosynthesis IV (anaerobic)
AYJ57_00915	PWY-7858	AYJ57_00915
AYJ57_00915	PWYG-321	mycolate biosynthesis
AYJ57_00980	PWY-6019	pseudouridine degradation
AYJ57_01005	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_01005	PWY-6416	quinate degradation II
AYJ57_01005	PWY-6707	gallate biosynthesis
AYJ57_01090	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_01110	PWY-5667	CDP-diacylglycerol biosynthesis I
AYJ57_01110	PWY-5981	CDP-diacylglycerol biosynthesis III
AYJ57_01110	PWY-7902	AYJ57_01110
AYJ57_01120	PWY-7902	AYJ57_01120
AYJ57_01135	PWY-6164	3-dehydroquinate biosynthesis I
AYJ57_01200	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_01200	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_01200	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_01200	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_01200	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_01200	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_01200	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_01200	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_01220	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYJ57_01220	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYJ57_01225	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYJ57_01225	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYJ57_01225	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYJ57_01225	PWY-6113	superpathway of mycolate biosynthesis
AYJ57_01225	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYJ57_01225	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_01225	PWY-7663	gondoate biosynthesis (anaerobic)
AYJ57_01225	PWY-7664	oleate biosynthesis IV (anaerobic)
AYJ57_01225	PWY-7858	AYJ57_01225
AYJ57_01225	PWYG-321	mycolate biosynthesis
AYJ57_01255	PWY-5958	acridone alkaloid biosynthesis
AYJ57_01255	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYJ57_01255	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYJ57_01270	PWY-6854	ethylene biosynthesis III (microbes)
AYJ57_01310	PWY-5958	acridone alkaloid biosynthesis
AYJ57_01310	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYJ57_01310	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYJ57_01330	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_01335	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_01350	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_01435	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_01435	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_01435	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_01435	PWY-7003	glycerol degradation to butanol
AYJ57_01450	PWY-7851	AYJ57_01450
AYJ57_01465	PWY-5642	2,4-dinitrotoluene degradation
AYJ57_01500	PWY-5392	reductive TCA cycle II
AYJ57_01500	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_01500	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_01500	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_01500	PWY-6728	methylaspartate cycle
AYJ57_01500	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_01500	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_01500	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_01520	PWY-6123	inosine-5'-phosphate biosynthesis I
AYJ57_01520	PWY-6124	inosine-5'-phosphate biosynthesis II
AYJ57_01520	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_01520	PWY-7234	inosine-5'-phosphate biosynthesis III
AYJ57_01585	PWY-4261	glycerol degradation I
AYJ57_01590	PWY-6531	mannitol cycle
AYJ57_01655	PWY-7799	AYJ57_01655
AYJ57_01655	PWY-7800	AYJ57_01655
AYJ57_01660	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_01660	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_01675	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYJ57_01675	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYJ57_01720	PWY-6825	phosphatidylcholine biosynthesis V
AYJ57_01730	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AYJ57_01730	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AYJ57_01745	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_01745	PWY-7118	chitin degradation to ethanol
AYJ57_01745	PWY-7294	xylose degradation IV
AYJ57_01745	PWY-7295	L-arabinose degradation IV
AYJ57_01745	PWY-7854	AYJ57_01745
AYJ57_01775	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_01775	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_01775	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_01775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_01775	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYJ57_01865	PWY-7560	methylerythritol phosphate pathway II
AYJ57_01870	PWY-5269	cardiolipin biosynthesis II
AYJ57_01870	PWY-5668	cardiolipin biosynthesis I
AYJ57_01870	PWY-7817	AYJ57_01870
AYJ57_01885	PWY-6599	guanine and guanosine salvage II
AYJ57_01885	PWY-6609	adenine and adenosine salvage III
AYJ57_01885	PWY-6610	adenine and adenosine salvage IV
AYJ57_01885	PWY-6620	guanine and guanosine salvage
AYJ57_01975	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYJ57_01975	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AYJ57_02025	PWY-7887	AYJ57_02025
AYJ57_02025	PWY-7892	AYJ57_02025
AYJ57_02050	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_02050	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_02050	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_02110	PWY-6164	3-dehydroquinate biosynthesis I
AYJ57_02115	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_02135	PWY-2781	<i>cis</i>-zeatin biosynthesis
AYJ57_02190	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_02190	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_02190	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_02195	PWY-6123	inosine-5'-phosphate biosynthesis I
AYJ57_02195	PWY-6124	inosine-5'-phosphate biosynthesis II
AYJ57_02195	PWY-7234	inosine-5'-phosphate biosynthesis III
AYJ57_02235	PWY-40	putrescine biosynthesis I
AYJ57_02235	PWY-6305	putrescine biosynthesis IV
AYJ57_02305	PWY-5250	methanogenesis from trimethylamine
AYJ57_02320	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_02325	PWY-7883	AYJ57_02325
AYJ57_02440	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_02440	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_02460	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_02460	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_02460	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_02495	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYJ57_02495	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYJ57_02495	PWY-6897	thiamin salvage II
AYJ57_02495	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYJ57_02495	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYJ57_02495	PWY-7356	thiamin salvage IV (yeast)
AYJ57_02495	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYJ57_02520	PWY-3341	L-proline biosynthesis III
AYJ57_02520	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYJ57_02525	PWY-3341	L-proline biosynthesis III
AYJ57_02525	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYJ57_02575	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_02575	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_02575	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_02575	PWY-7003	glycerol degradation to butanol
AYJ57_02620	PWY-3961	phosphopantothenate biosynthesis II
AYJ57_02625	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYJ57_02625	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYJ57_02635	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_02635	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AYJ57_02635	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYJ57_02635	PWY-6692	Fe(II) oxidation
AYJ57_02760	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_02760	PWY-5743	3-hydroxypropanoate cycle
AYJ57_02760	PWY-5744	glyoxylate assimilation
AYJ57_02760	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_02760	PWY-6722	candicidin biosynthesis
AYJ57_02830	PWY-6683	sulfate reduction III (assimilatory)
AYJ57_02850	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_02920	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYJ57_02925	PWY-6749	CMP-legionaminate biosynthesis I
AYJ57_02930	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYJ57_02975	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AYJ57_03000	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AYJ57_03000	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYJ57_03025	PWY-6700	queuosine biosynthesis
AYJ57_03085	PWY-5101	L-isoleucine biosynthesis II
AYJ57_03085	PWY-6871	3-methylbutanol biosynthesis
AYJ57_03120	PWY-40	putrescine biosynthesis I
AYJ57_03120	PWY-6305	putrescine biosynthesis IV
AYJ57_03145	PWY-7399	methylphosphonate degradation II
AYJ57_03145	PWY-7805	AYJ57_03145
AYJ57_03145	PWY-7807	AYJ57_03145
AYJ57_03150	PWY-7805	AYJ57_03150
AYJ57_03150	PWY-7807	AYJ57_03150
AYJ57_03155	PWY-7805	AYJ57_03155
AYJ57_03155	PWY-7807	AYJ57_03155
AYJ57_03160	PWY-7399	methylphosphonate degradation II
AYJ57_03160	PWY-7805	AYJ57_03160
AYJ57_03160	PWY-7807	AYJ57_03160
AYJ57_03170	PWY-7399	methylphosphonate degradation II
AYJ57_03170	PWY-7805	AYJ57_03170
AYJ57_03170	PWY-7807	AYJ57_03170
AYJ57_03190	PWY-7399	methylphosphonate degradation II
AYJ57_03190	PWY-7805	AYJ57_03190
AYJ57_03190	PWY-7807	AYJ57_03190
AYJ57_03200	PWY-7399	methylphosphonate degradation II
AYJ57_03200	PWY-7805	AYJ57_03200
AYJ57_03200	PWY-7807	AYJ57_03200
AYJ57_03245	PWY-7533	gliotoxin biosynthesis
AYJ57_03250	PWY-6910	hydroxymethylpyrimidine salvage
AYJ57_03250	PWY-7356	thiamin salvage IV (yeast)
AYJ57_03250	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYJ57_03255	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYJ57_03255	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYJ57_03255	PWY-6897	thiamin salvage II
AYJ57_03255	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYJ57_03255	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYJ57_03255	PWY-7356	thiamin salvage IV (yeast)
AYJ57_03255	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYJ57_03260	PWY-6897	thiamin salvage II
AYJ57_03260	PWY-7356	thiamin salvage IV (yeast)
AYJ57_03260	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYJ57_03265	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AYJ57_03270	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_03270	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AYJ57_03270	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYJ57_03335	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_03365	PWY-6788	cellulose degradation II (fungi)
AYJ57_03385	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYJ57_03385	PWY-2361	3-oxoadipate degradation
AYJ57_03385	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYJ57_03430	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_03430	PWY-5723	Rubisco shunt
AYJ57_03595	PWY-7805	AYJ57_03595
AYJ57_03595	PWY-7807	AYJ57_03595
AYJ57_03600	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_03660	PWY-6832	2-aminoethylphosphonate degradation II
AYJ57_03725	PWY-4041	&gamma;-glutamyl cycle
AYJ57_03725	PWY-4061	glutathione-mediated detoxification I
AYJ57_03725	PWY-5826	hypoglycin biosynthesis
AYJ57_03725	PWY-6842	glutathione-mediated detoxification II
AYJ57_03725	PWY-7112	4-hydroxy-2-nonenal detoxification
AYJ57_03725	PWY-7559	glutathione degradation (DUG pathway - yeast)
AYJ57_03785	PWY-5108	L-isoleucine biosynthesis V
AYJ57_03785	PWY-5132	humulone biosynthesis
AYJ57_03785	PWY-5133	cohumulone biosynthesis
AYJ57_03785	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AYJ57_03785	PWY-7118	chitin degradation to ethanol
AYJ57_03785	PWY-7857	AYJ57_03785
AYJ57_03805	PWY-7801	AYJ57_03805
AYJ57_03850	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_03850	PWY-6168	flavin biosynthesis III (fungi)
AYJ57_03850	PWY-7980	AYJ57_03850
AYJ57_03915	PWY-4041	&gamma;-glutamyl cycle
AYJ57_03915	PWY-7942	AYJ57_03915
AYJ57_03995	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_03995	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_03995	PWY-7953	AYJ57_03995
AYJ57_04095	PWY-5704	urea degradation II
AYJ57_04120	PWY-5704	urea degradation II
AYJ57_04125	PWY-5704	urea degradation II
AYJ57_04140	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYJ57_04140	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_04140	PWY-7242	D-fructuronate degradation
AYJ57_04140	PWY-7310	D-glucosaminate degradation
AYJ57_04140	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AYJ57_04145	PWY-7130	L-glucose degradation
AYJ57_04195	PWY-7991	AYJ57_04195
AYJ57_04225	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AYJ57_04255	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AYJ57_04280	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_04280	PWY-4521	arsenite oxidation I (respiratory)
AYJ57_04280	PWY-6692	Fe(II) oxidation
AYJ57_04280	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_04330	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYJ57_04330	PWY-7494	choline degradation IV
AYJ57_04385	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_04385	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_04390	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_04390	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_04390	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_04390	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_04400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_04400	PWY-5723	Rubisco shunt
AYJ57_04425	PWY-6605	adenine and adenosine salvage II
AYJ57_04425	PWY-6610	adenine and adenosine salvage IV
AYJ57_04425	PWY-7805	AYJ57_04425
AYJ57_04425	PWY-7807	AYJ57_04425
AYJ57_04490	PWY-4202	arsenate detoxification I (glutaredoxin)
AYJ57_04490	PWY-5532	adenosine nucleotides degradation IV
AYJ57_04490	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_04490	PWY-6608	guanosine nucleotides degradation III
AYJ57_04490	PWY-6609	adenine and adenosine salvage III
AYJ57_04490	PWY-6611	adenine and adenosine salvage V
AYJ57_04490	PWY-6620	guanine and guanosine salvage
AYJ57_04490	PWY-6627	salinosporamide A biosynthesis
AYJ57_04490	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AYJ57_04490	PWY-7179	purine deoxyribonucleosides degradation I
AYJ57_04490	PWY-7179-1	purine deoxyribonucleosides degradation
AYJ57_04510	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_04510	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AYJ57_04510	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_04510	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_04510	PWY-6728	methylaspartate cycle
AYJ57_04510	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_04510	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_04510	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_04520	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_04520	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AYJ57_04520	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_04520	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_04520	PWY-6728	methylaspartate cycle
AYJ57_04520	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_04520	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_04520	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_04535	PWY-5741	ethylmalonyl-CoA pathway
AYJ57_04535	PWY-5744	glyoxylate assimilation
AYJ57_04535	PWY-6728	methylaspartate cycle
AYJ57_04535	PWY-7854	AYJ57_04535
AYJ57_04580	PWY-1622	formaldehyde assimilation I (serine pathway)
AYJ57_04580	PWY-5392	reductive TCA cycle II
AYJ57_04580	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_04580	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_04580	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_04580	PWY-6728	methylaspartate cycle
AYJ57_04580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_04580	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYJ57_04580	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_04585	PWY-5392	reductive TCA cycle II
AYJ57_04585	PWY-5537	pyruvate fermentation to acetate V
AYJ57_04585	PWY-5538	pyruvate fermentation to acetate VI
AYJ57_04585	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_04585	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_04585	PWY-6728	methylaspartate cycle
AYJ57_04585	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_04585	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_04590	PWY-5392	reductive TCA cycle II
AYJ57_04590	PWY-5537	pyruvate fermentation to acetate V
AYJ57_04590	PWY-5538	pyruvate fermentation to acetate VI
AYJ57_04590	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_04590	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_04590	PWY-6728	methylaspartate cycle
AYJ57_04590	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_04590	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_04595	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYJ57_04600	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYJ57_04615	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AYJ57_04615	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AYJ57_04625	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AYJ57_04625	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYJ57_04680	PWY-6617	adenosine nucleotides degradation III
AYJ57_04700	PWY-6700	queuosine biosynthesis
AYJ57_04705	PWY-6703	preQ<sub>0</sub> biosynthesis
AYJ57_04715	PWY-6703	preQ<sub>0</sub> biosynthesis
AYJ57_04720	PWY-6891	thiazole biosynthesis II (Bacillus)
AYJ57_04720	PWY-6892	thiazole biosynthesis I (E. coli)
AYJ57_04720	PWY-7560	methylerythritol phosphate pathway II
AYJ57_04750	PWY-5057	L-valine degradation II
AYJ57_04750	PWY-5076	L-leucine degradation III
AYJ57_04750	PWY-5078	L-isoleucine degradation II
AYJ57_04750	PWY-5101	L-isoleucine biosynthesis II
AYJ57_04750	PWY-5103	L-isoleucine biosynthesis III
AYJ57_04750	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_04750	PWY-5108	L-isoleucine biosynthesis V
AYJ57_04750	PWY-7767	AYJ57_04750
AYJ57_04780	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_04790	PWY-6168	flavin biosynthesis III (fungi)
AYJ57_04790	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYJ57_04790	PWY-7991	AYJ57_04790
AYJ57_04865	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYJ57_04865	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AYJ57_04920	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYJ57_04920	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYJ57_04920	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYJ57_04920	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYJ57_04920	PWY-6113	superpathway of mycolate biosynthesis
AYJ57_04920	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYJ57_04920	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_04920	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYJ57_04920	PWY-7663	gondoate biosynthesis (anaerobic)
AYJ57_04920	PWY-7664	oleate biosynthesis IV (anaerobic)
AYJ57_04920	PWY-7858	AYJ57_04920
AYJ57_04920	PWYG-321	mycolate biosynthesis
AYJ57_04930	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYJ57_04930	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYJ57_04930	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYJ57_04930	PWY-6113	superpathway of mycolate biosynthesis
AYJ57_04930	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYJ57_04930	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_04930	PWY-7663	gondoate biosynthesis (anaerobic)
AYJ57_04930	PWY-7664	oleate biosynthesis IV (anaerobic)
AYJ57_04930	PWY-7858	AYJ57_04930
AYJ57_04930	PWYG-321	mycolate biosynthesis
AYJ57_04970	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AYJ57_04970	PWY-6853	ethylene biosynthesis II (microbes)
AYJ57_04970	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYJ57_04980	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_04985	PWY-2301	<i>myo</i>-inositol biosynthesis
AYJ57_04985	PWY-4702	phytate degradation I
AYJ57_04985	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AYJ57_05045	PWY-5386	methylglyoxal degradation I
AYJ57_05060	PWY-3841	folate transformations II
AYJ57_05060	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_05060	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_05060	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_05060	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYJ57_05060	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_05065	PWY-3841	folate transformations II
AYJ57_05065	PWY-6614	tetrahydrofolate biosynthesis
AYJ57_05230	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
AYJ57_05260	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AYJ57_05315	PWY-5028	L-histidine degradation II
AYJ57_05315	PWY-5030	L-histidine degradation III
AYJ57_05325	PWY-5028	L-histidine degradation II
AYJ57_05325	PWY-5030	L-histidine degradation III
AYJ57_05330	PWY-5028	L-histidine degradation II
AYJ57_05330	PWY-5030	L-histidine degradation III
AYJ57_05395	PWY-6700	queuosine biosynthesis
AYJ57_05405	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_05405	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_05405	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_05405	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_05415	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_05425	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AYJ57_05445	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AYJ57_05460	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_05460	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AYJ57_05460	PWY-6638	sulfolactate degradation III
AYJ57_05460	PWY-6642	(<i>R</i>)-cysteate degradation
AYJ57_05460	PWY-6643	coenzyme M biosynthesis II
AYJ57_05460	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYJ57_05460	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_05460	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_05465	PWY-5350	thiosulfate disproportionation III (rhodanese)
AYJ57_05465	PWY-7927	AYJ57_05465
AYJ57_05475	PWY-5691	urate degradation to allantoin I
AYJ57_05475	PWY-7394	urate degradation to allantoin II
AYJ57_05475	PWY-7849	AYJ57_05475
AYJ57_05485	PWY-5694	allantoin degradation to glyoxylate I
AYJ57_05485	PWY-5705	allantoin degradation to glyoxylate III
AYJ57_05590	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AYJ57_05590	PWY-7820	AYJ57_05590
AYJ57_05660	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_05690	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_05690	PWY-6692	Fe(II) oxidation
AYJ57_05690	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AYJ57_05690	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_05705	PWY-5669	phosphatidylethanolamine biosynthesis I
AYJ57_05710	PWY-5669	phosphatidylethanolamine biosynthesis I
AYJ57_05770	PWY-7851	AYJ57_05770
AYJ57_05915	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AYJ57_05975	PWY-7425	2-chloroacrylate degradation I
AYJ57_05990	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYJ57_06195	PWY-5963	thio-molybdenum cofactor biosynthesis
AYJ57_06205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_06205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_06420	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_06455	PWY-7399	methylphosphonate degradation II
AYJ57_06455	PWY-7805	AYJ57_06455
AYJ57_06455	PWY-7807	AYJ57_06455
AYJ57_06465	PWY-6123	inosine-5'-phosphate biosynthesis I
AYJ57_06465	PWY-7234	inosine-5'-phosphate biosynthesis III
AYJ57_06470	PWY-5481	pyruvate fermentation to lactate
AYJ57_06470	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_06485	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_06485	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_06525	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYJ57_06525	PWY-5109	2-methylbutanoate biosynthesis
AYJ57_06525	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYJ57_06525	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYJ57_06525	PWY-5177	glutaryl-CoA degradation
AYJ57_06525	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_06525	PWY-6435	4-hydroxybenzoate biosynthesis V
AYJ57_06525	PWY-6583	pyruvate fermentation to butanol I
AYJ57_06525	PWY-6863	pyruvate fermentation to hexanol
AYJ57_06525	PWY-6883	pyruvate fermentation to butanol II
AYJ57_06525	PWY-6944	androstenedione degradation
AYJ57_06525	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYJ57_06525	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYJ57_06525	PWY-7007	methyl ketone biosynthesis
AYJ57_06525	PWY-7046	4-coumarate degradation (anaerobic)
AYJ57_06525	PWY-7094	fatty acid salvage
AYJ57_06525	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYJ57_06525	PWY-735	jasmonic acid biosynthesis
AYJ57_06525	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYJ57_06525	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYJ57_06525	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYJ57_06525	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYJ57_06525	PWY-7726	AYJ57_06525
AYJ57_06525	PWY-7778	AYJ57_06525
AYJ57_06525	PWY-7779	AYJ57_06525
AYJ57_06600	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_06600	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYJ57_06600	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_06600	PWY-5723	Rubisco shunt
AYJ57_06600	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_06600	PWY-6886	1-butanol autotrophic biosynthesis
AYJ57_06600	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_06600	PWY-7003	glycerol degradation to butanol
AYJ57_06600	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYJ57_06600	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_06665	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_06675	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AYJ57_06675	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_06675	PWY-6168	flavin biosynthesis III (fungi)
AYJ57_06675	PWY-7863	AYJ57_06675
AYJ57_06760	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_06760	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYJ57_06760	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_06760	PWY-5723	Rubisco shunt
AYJ57_06760	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_06760	PWY-6886	1-butanol autotrophic biosynthesis
AYJ57_06760	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_06760	PWY-7003	glycerol degradation to butanol
AYJ57_06760	PWY-7124	ethylene biosynthesis V (engineered)
AYJ57_06760	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AYJ57_06825	PWY-5741	ethylmalonyl-CoA pathway
AYJ57_06825	PWY-5743	3-hydroxypropanoate cycle
AYJ57_06825	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_06825	PWY-6728	methylaspartate cycle
AYJ57_06825	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_06825	PWY-7854	AYJ57_06825
AYJ57_06870	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_06870	PWY-5686	UMP biosynthesis
AYJ57_06870	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_06870	PWY-7790	AYJ57_06870
AYJ57_06870	PWY-7791	AYJ57_06870
AYJ57_06950	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_06950	PWY-5743	3-hydroxypropanoate cycle
AYJ57_06950	PWY-5744	glyoxylate assimilation
AYJ57_06950	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_06950	PWY-6722	candicidin biosynthesis
AYJ57_06955	PWY-2161	folate polyglutamylation
AYJ57_06985	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_07150	PWY-7352	daunorubicin biosynthesis
AYJ57_07150	PWY-7354	aclacinomycin biosynthesis
AYJ57_07195	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYJ57_07195	PWY-7494	choline degradation IV
AYJ57_07245	PWY-6012	acyl carrier protein metabolism I
AYJ57_07245	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYJ57_07245	PWY-6289	petrobactin biosynthesis
AYJ57_07285	PWY-6871	3-methylbutanol biosynthesis
AYJ57_07345	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_07345	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYJ57_07355	PWY-5667	CDP-diacylglycerol biosynthesis I
AYJ57_07355	PWY-5981	CDP-diacylglycerol biosynthesis III
AYJ57_07355	PWY-7902	AYJ57_07355
AYJ57_07395	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYJ57_07500	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AYJ57_07500	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AYJ57_07500	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AYJ57_07500	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AYJ57_07500	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AYJ57_07500	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AYJ57_07500	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AYJ57_07500	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AYJ57_07500	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AYJ57_07500	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AYJ57_07620	PWY-4983	L-citrulline-nitric oxide cycle
AYJ57_07620	PWY-4984	urea cycle
AYJ57_07620	PWY-5	canavanine biosynthesis
AYJ57_07620	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_07620	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_07650	PWY-1281	sulfoacetaldehyde degradation I
AYJ57_07650	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYJ57_07650	PWY-5482	pyruvate fermentation to acetate II
AYJ57_07650	PWY-5485	pyruvate fermentation to acetate IV
AYJ57_07650	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_07650	PWY-6637	sulfolactate degradation II
AYJ57_07650	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_07710	PWY-7980	AYJ57_07710
AYJ57_07720	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_07725	PWY-7851	AYJ57_07725
AYJ57_07760	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AYJ57_07760	PWY-6174	mevalonate pathway II (archaea)
AYJ57_07760	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AYJ57_07760	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AYJ57_07760	PWY-7102	bisabolene biosynthesis
AYJ57_07760	PWY-7391	isoprene biosynthesis II (engineered)
AYJ57_07760	PWY-7524	mevalonate pathway III (archaea)
AYJ57_07760	PWY-7560	methylerythritol phosphate pathway II
AYJ57_07760	PWY-922	mevalonate pathway I
AYJ57_07825	PWY-5839	menaquinol-7 biosynthesis
AYJ57_07825	PWY-5844	menaquinol-9 biosynthesis
AYJ57_07825	PWY-5849	menaquinol-6 biosynthesis
AYJ57_07825	PWY-5890	menaquinol-10 biosynthesis
AYJ57_07825	PWY-5891	menaquinol-11 biosynthesis
AYJ57_07825	PWY-5892	menaquinol-12 biosynthesis
AYJ57_07825	PWY-5895	menaquinol-13 biosynthesis
AYJ57_07870	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_07955	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYJ57_08060	PWY-2941	L-lysine biosynthesis II
AYJ57_08060	PWY-2942	L-lysine biosynthesis III
AYJ57_08060	PWY-5097	L-lysine biosynthesis VI
AYJ57_08080	PWY-4983	L-citrulline-nitric oxide cycle
AYJ57_08080	PWY-4984	urea cycle
AYJ57_08080	PWY-5	canavanine biosynthesis
AYJ57_08080	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_08080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_08100	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AYJ57_08110	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_08225	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_08260	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_08260	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYJ57_08260	PWY-7761	AYJ57_08260
AYJ57_08315	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_08315	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_08320	PWY-5194	siroheme biosynthesis
AYJ57_08320	PWY-5196	factor 430 biosynthesis
AYJ57_08320	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AYJ57_08335	PWY-6683	sulfate reduction III (assimilatory)
AYJ57_08400	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_08400	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_08415	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_08415	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_08415	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_08415	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_08420	PWY-5686	UMP biosynthesis
AYJ57_08420	PWY-7790	AYJ57_08420
AYJ57_08420	PWY-7791	AYJ57_08420
AYJ57_08505	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_08505	PWY-7887	AYJ57_08505
AYJ57_08515	PWY-5269	cardiolipin biosynthesis II
AYJ57_08515	PWY-5668	cardiolipin biosynthesis I
AYJ57_08515	PWY-7817	AYJ57_08515
AYJ57_08555	PWY-6012	acyl carrier protein metabolism I
AYJ57_08555	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AYJ57_08555	PWY-6289	petrobactin biosynthesis
AYJ57_08580	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYJ57_08580	PWY-6148	tetrahydromethanopterin biosynthesis
AYJ57_08580	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYJ57_08580	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYJ57_08580	PWY-7852	AYJ57_08580
AYJ57_08580	PWY-7853	AYJ57_08580
AYJ57_08595	PWY-7560	methylerythritol phosphate pathway II
AYJ57_08675	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_08710	PWY-6610	adenine and adenosine salvage IV
AYJ57_08770	PWY-2941	L-lysine biosynthesis II
AYJ57_08770	PWY-2942	L-lysine biosynthesis III
AYJ57_08770	PWY-5097	L-lysine biosynthesis VI
AYJ57_08770	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_08770	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AYJ57_08770	PWY-6559	spermidine biosynthesis II
AYJ57_08770	PWY-6562	norspermidine biosynthesis
AYJ57_08770	PWY-7153	grixazone biosynthesis
AYJ57_08770	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_08770	PWY-7977	AYJ57_08770
AYJ57_08780	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYJ57_08780	PWY-5743	3-hydroxypropanoate cycle
AYJ57_08780	PWY-5744	glyoxylate assimilation
AYJ57_08780	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_08780	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_08780	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYJ57_08780	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_08800	PWY-40	putrescine biosynthesis I
AYJ57_08800	PWY-6305	putrescine biosynthesis IV
AYJ57_08850	PWY-6829	tRNA methylation (yeast)
AYJ57_08850	PWY-7285	methylwyosine biosynthesis
AYJ57_08850	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AYJ57_08875	PWY-3461	L-tyrosine biosynthesis II
AYJ57_08875	PWY-3462	L-phenylalanine biosynthesis II
AYJ57_08875	PWY-6120	L-tyrosine biosynthesis III
AYJ57_08875	PWY-6627	salinosporamide A biosynthesis
AYJ57_08875	PWY-7626	bacilysin biosynthesis
AYJ57_08975	PWY-6654	phosphopantothenate biosynthesis III
AYJ57_08995	PWY-7942	AYJ57_08995
AYJ57_09020	PWY-5386	methylglyoxal degradation I
AYJ57_09035	PWY-7980	AYJ57_09035
AYJ57_09045	PWY-7980	AYJ57_09045
AYJ57_09090	PWY-5686	UMP biosynthesis
AYJ57_09090	PWY-7790	AYJ57_09090
AYJ57_09090	PWY-7791	AYJ57_09090
AYJ57_09110	PWY-7158	L-phenylalanine degradation V
AYJ57_09210	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AYJ57_09210	PWY-622	starch biosynthesis
AYJ57_09210	PWY-7900	AYJ57_09210
AYJ57_09430	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_09460	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_09460	PWY-3162	L-tryptophan degradation V (side chain pathway)
AYJ57_09460	PWY-5057	L-valine degradation II
AYJ57_09460	PWY-5076	L-leucine degradation III
AYJ57_09460	PWY-5078	L-isoleucine degradation II
AYJ57_09460	PWY-5079	L-phenylalanine degradation III
AYJ57_09460	PWY-5082	L-methionine degradation III
AYJ57_09460	PWY-5480	pyruvate fermentation to ethanol I
AYJ57_09460	PWY-5486	pyruvate fermentation to ethanol II
AYJ57_09460	PWY-5751	phenylethanol biosynthesis
AYJ57_09460	PWY-6313	serotonin degradation
AYJ57_09460	PWY-6333	acetaldehyde biosynthesis I
AYJ57_09460	PWY-6342	noradrenaline and adrenaline degradation
AYJ57_09460	PWY-6587	pyruvate fermentation to ethanol III
AYJ57_09460	PWY-6802	salidroside biosynthesis
AYJ57_09460	PWY-6871	3-methylbutanol biosynthesis
AYJ57_09460	PWY-7013	L-1,2-propanediol degradation
AYJ57_09460	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_09460	PWY-7118	chitin degradation to ethanol
AYJ57_09460	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYJ57_09460	PWY-7798	AYJ57_09460
AYJ57_09570	PWY-3821	galactose degradation III
AYJ57_09570	PWY-6317	galactose degradation I (Leloir pathway)
AYJ57_09570	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AYJ57_09570	PWY-6527	stachyose degradation
AYJ57_09570	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AYJ57_09570	PWY-7344	UDP-D-galactose biosynthesis
AYJ57_09575	PWY-3801	sucrose degradation II (sucrose synthase)
AYJ57_09575	PWY-6527	stachyose degradation
AYJ57_09575	PWY-7238	sucrose biosynthesis II
AYJ57_09575	PWY-7343	UDP-glucose biosynthesis
AYJ57_09575	PWY-7817	AYJ57_09575
AYJ57_09640	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_09645	PWY-6502	oxidized GTP and dGTP detoxification
AYJ57_09690	PWY-7560	methylerythritol phosphate pathway II
AYJ57_09715	PWY-5676	acetyl-CoA fermentation to butanoate II
AYJ57_09715	PWY-5741	ethylmalonyl-CoA pathway
AYJ57_09715	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYJ57_09715	PWY-7948	AYJ57_09715
AYJ57_09865	PWY-5278	sulfite oxidation III
AYJ57_09865	PWY-5340	sulfate activation for sulfonation
AYJ57_09865	PWY-6683	sulfate reduction III (assimilatory)
AYJ57_09865	PWY-6932	selenate reduction
AYJ57_09895	PWY-3341	L-proline biosynthesis III
AYJ57_09895	PWY-4981	L-proline biosynthesis II (from arginine)
AYJ57_09895	PWY-6344	L-ornithine degradation II (Stickland reaction)
AYJ57_09910	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYJ57_09940	PWY-6826	phosphatidylcholine biosynthesis VI
AYJ57_09955	PWY-2941	L-lysine biosynthesis II
AYJ57_09955	PWY-5097	L-lysine biosynthesis VI
AYJ57_10045	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AYJ57_10115	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_10140	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_10200	PWY-5129	sphingolipid biosynthesis (plants)
AYJ57_10200	PWY-7836	AYJ57_10200
AYJ57_10200	PWY-7838	AYJ57_10200
AYJ57_10200	PWY-7839	AYJ57_10200
AYJ57_10200	PWY-7841	AYJ57_10200
AYJ57_10240	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_10240	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYJ57_10240	PWY-7761	AYJ57_10240
AYJ57_10255	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_10285	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_10285	PWY-5723	Rubisco shunt
AYJ57_10345	PWY-5686	UMP biosynthesis
AYJ57_10350	PWY-4202	arsenate detoxification I (glutaredoxin)
AYJ57_10350	PWY-4621	arsenate detoxification II (glutaredoxin)
AYJ57_10405	PWY-5750	itaconate biosynthesis
AYJ57_10405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_10405	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AYJ57_10480	PWY-2941	L-lysine biosynthesis II
AYJ57_10480	PWY-2942	L-lysine biosynthesis III
AYJ57_10480	PWY-5097	L-lysine biosynthesis VI
AYJ57_10480	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AYJ57_10480	PWY-6559	spermidine biosynthesis II
AYJ57_10480	PWY-6562	norspermidine biosynthesis
AYJ57_10480	PWY-7153	grixazone biosynthesis
AYJ57_10480	PWY-7977	AYJ57_10480
AYJ57_10485	PWY-2582	brassinosteroid biosynthesis II
AYJ57_10485	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYJ57_10485	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYJ57_10485	PWY-6948	sitosterol degradation to androstenedione
AYJ57_10485	PWY-699	brassinosteroid biosynthesis I
AYJ57_10485	PWY-7299	progesterone biosynthesis
AYJ57_10505	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AYJ57_10525	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_10525	PWY-6168	flavin biosynthesis III (fungi)
AYJ57_10525	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYJ57_10525	PWY-7991	AYJ57_10525
AYJ57_10530	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_10530	PWY-6168	flavin biosynthesis III (fungi)
AYJ57_10615	PWY-381	nitrate reduction II (assimilatory)
AYJ57_10615	PWY-5675	nitrate reduction V (assimilatory)
AYJ57_10615	PWY-6549	L-glutamine biosynthesis III
AYJ57_10615	PWY-6963	ammonia assimilation cycle I
AYJ57_10615	PWY-6964	ammonia assimilation cycle II
AYJ57_10625	PWY-381	nitrate reduction II (assimilatory)
AYJ57_10625	PWY-5675	nitrate reduction V (assimilatory)
AYJ57_10625	PWY-6549	L-glutamine biosynthesis III
AYJ57_10625	PWY-6963	ammonia assimilation cycle I
AYJ57_10625	PWY-6964	ammonia assimilation cycle II
AYJ57_10670	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AYJ57_10670	PWY-7177	UTP and CTP dephosphorylation II
AYJ57_10670	PWY-7185	UTP and CTP dephosphorylation I
AYJ57_10685	PWY-6898	thiamin salvage III
AYJ57_10685	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYJ57_10685	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYJ57_10685	PWY-7356	thiamin salvage IV (yeast)
AYJ57_10725	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_10725	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_10850	PWY-5101	L-isoleucine biosynthesis II
AYJ57_10850	PWY-5103	L-isoleucine biosynthesis III
AYJ57_10850	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_10850	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_10955	PWY-4261	glycerol degradation I
AYJ57_10960	PWY-4041	&gamma;-glutamyl cycle
AYJ57_10960	PWY-4061	glutathione-mediated detoxification I
AYJ57_10960	PWY-5826	hypoglycin biosynthesis
AYJ57_10960	PWY-6842	glutathione-mediated detoxification II
AYJ57_10960	PWY-7112	4-hydroxy-2-nonenal detoxification
AYJ57_10960	PWY-7559	glutathione degradation (DUG pathway - yeast)
AYJ57_11000	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_11130	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_11180	PWY-6936	seleno-amino acid biosynthesis
AYJ57_11215	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYJ57_11215	PWY-5109	2-methylbutanoate biosynthesis
AYJ57_11215	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYJ57_11215	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYJ57_11215	PWY-5177	glutaryl-CoA degradation
AYJ57_11215	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_11215	PWY-6435	4-hydroxybenzoate biosynthesis V
AYJ57_11215	PWY-6583	pyruvate fermentation to butanol I
AYJ57_11215	PWY-6863	pyruvate fermentation to hexanol
AYJ57_11215	PWY-6883	pyruvate fermentation to butanol II
AYJ57_11215	PWY-6944	androstenedione degradation
AYJ57_11215	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYJ57_11215	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYJ57_11215	PWY-7007	methyl ketone biosynthesis
AYJ57_11215	PWY-7046	4-coumarate degradation (anaerobic)
AYJ57_11215	PWY-7094	fatty acid salvage
AYJ57_11215	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYJ57_11215	PWY-735	jasmonic acid biosynthesis
AYJ57_11215	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYJ57_11215	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYJ57_11215	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYJ57_11215	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYJ57_11215	PWY-7726	AYJ57_11215
AYJ57_11215	PWY-7778	AYJ57_11215
AYJ57_11215	PWY-7779	AYJ57_11215
AYJ57_11345	PWY-7352	daunorubicin biosynthesis
AYJ57_11345	PWY-7354	aclacinomycin biosynthesis
AYJ57_11370	PWY-5958	acridone alkaloid biosynthesis
AYJ57_11370	PWY-6543	4-aminobenzoate biosynthesis
AYJ57_11370	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AYJ57_11370	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AYJ57_11425	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_11425	PWY-6606	guanosine nucleotides degradation II
AYJ57_11425	PWY-6608	guanosine nucleotides degradation III
AYJ57_11425	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYJ57_11440	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_11440	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_11440	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_11490	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_11545	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_11545	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_11545	PWY-7953	AYJ57_11545
AYJ57_11550	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_11550	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_11550	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_11555	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_11555	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_11570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_11570	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_11570	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_11570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_11575	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_11575	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_11575	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_11575	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_11580	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_11580	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_11580	PWY-7953	AYJ57_11580
AYJ57_11595	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_11595	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_11595	PWY-7953	AYJ57_11595
AYJ57_11600	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_11600	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_11600	PWY-7953	AYJ57_11600
AYJ57_11660	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_11660	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_11660	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_11660	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AYJ57_11660	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_11660	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_11665	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_11665	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_11805	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AYJ57_11860	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
AYJ57_11900	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_11900	PWY-4521	arsenite oxidation I (respiratory)
AYJ57_11900	PWY-6692	Fe(II) oxidation
AYJ57_11900	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_11900	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AYJ57_11925	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_11925	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_11925	PWY-6596	adenosine nucleotides degradation I
AYJ57_11925	PWY-6606	guanosine nucleotides degradation II
AYJ57_11925	PWY-6607	guanosine nucleotides degradation I
AYJ57_11925	PWY-6608	guanosine nucleotides degradation III
AYJ57_11925	PWY-7185	UTP and CTP dephosphorylation I
AYJ57_11925	PWY-7821	AYJ57_11925
AYJ57_11940	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AYJ57_11940	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AYJ57_11940	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AYJ57_11940	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AYJ57_11980	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_11990	PWY-5686	UMP biosynthesis
AYJ57_11990	PWY-7790	AYJ57_11990
AYJ57_11990	PWY-7791	AYJ57_11990
AYJ57_11995	PWY-5686	UMP biosynthesis
AYJ57_11995	PWY-7790	AYJ57_11995
AYJ57_11995	PWY-7791	AYJ57_11995
AYJ57_12025	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYJ57_12025	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AYJ57_12065	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AYJ57_12065	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AYJ57_12065	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AYJ57_12065	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AYJ57_12110	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_12165	PWY-7802	AYJ57_12165
AYJ57_12205	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AYJ57_12205	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_12205	PWY-7242	D-fructuronate degradation
AYJ57_12205	PWY-7310	D-glucosaminate degradation
AYJ57_12205	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AYJ57_12210	PWY-5101	L-isoleucine biosynthesis II
AYJ57_12210	PWY-5103	L-isoleucine biosynthesis III
AYJ57_12210	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_12210	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_12340	PWY-6700	queuosine biosynthesis
AYJ57_12435	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_12435	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYJ57_12450	PWY-2201	folate transformations I
AYJ57_12450	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_12450	PWY-7909	AYJ57_12450
AYJ57_12475	PWY-5656	mannosylglycerate biosynthesis I
AYJ57_12480	PWY-2201	folate transformations I
AYJ57_12480	PWY-3841	folate transformations II
AYJ57_12630	PWY-5663	tetrahydrobiopterin biosynthesis I
AYJ57_12630	PWY-5664	tetrahydrobiopterin biosynthesis II
AYJ57_12630	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYJ57_12630	PWY-6703	preQ<sub>0</sub> biosynthesis
AYJ57_12630	PWY-6983	tetrahydrobiopterin biosynthesis III
AYJ57_12630	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYJ57_12630	PWY-7852	AYJ57_12630
AYJ57_12675	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AYJ57_12685	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_12685	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_12690	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AYJ57_12900	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_12905	PWY-5108	L-isoleucine biosynthesis V
AYJ57_12905	PWY-5132	humulone biosynthesis
AYJ57_12905	PWY-5133	cohumulone biosynthesis
AYJ57_12905	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AYJ57_12905	PWY-7118	chitin degradation to ethanol
AYJ57_12905	PWY-7857	AYJ57_12905
AYJ57_12985	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AYJ57_13080	PWY-381	nitrate reduction II (assimilatory)
AYJ57_13080	PWY-5675	nitrate reduction V (assimilatory)
AYJ57_13080	PWY-6549	L-glutamine biosynthesis III
AYJ57_13080	PWY-6963	ammonia assimilation cycle I
AYJ57_13080	PWY-6964	ammonia assimilation cycle II
AYJ57_13090	PWY-6938	NADH repair
AYJ57_13130	PWY-5367	petroselinate biosynthesis
AYJ57_13130	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AYJ57_13130	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AYJ57_13130	PWY-5989	stearate biosynthesis II (bacteria and plants)
AYJ57_13130	PWY-5994	palmitate biosynthesis I (animals and fungi)
AYJ57_13130	PWY-6113	superpathway of mycolate biosynthesis
AYJ57_13130	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AYJ57_13130	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_13130	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AYJ57_13130	PWY-7663	gondoate biosynthesis (anaerobic)
AYJ57_13130	PWY-7664	oleate biosynthesis IV (anaerobic)
AYJ57_13130	PWY-7858	AYJ57_13130
AYJ57_13130	PWYG-321	mycolate biosynthesis
AYJ57_13165	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
AYJ57_13170	PWY-5833	CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis
AYJ57_13170	PWY-5940	streptomycin biosynthesis
AYJ57_13380	PWY-5392	reductive TCA cycle II
AYJ57_13380	PWY-5537	pyruvate fermentation to acetate V
AYJ57_13380	PWY-5538	pyruvate fermentation to acetate VI
AYJ57_13380	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_13380	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_13380	PWY-6728	methylaspartate cycle
AYJ57_13380	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_13380	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_13525	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_13525	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AYJ57_13525	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_13525	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_13525	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AYJ57_13525	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_13525	PWY-7205	CMP phosphorylation
AYJ57_13525	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_13525	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_13525	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_13525	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_13525	PWY-7224	purine deoxyribonucleosides salvage
AYJ57_13525	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_13525	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_13655	PWY-6936	seleno-amino acid biosynthesis
AYJ57_13655	PWY-7274	D-cycloserine biosynthesis
AYJ57_13655	PWY-7870	AYJ57_13655
AYJ57_13685	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_13685	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_13685	PWY-6886	1-butanol autotrophic biosynthesis
AYJ57_13685	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_13685	PWY-7003	glycerol degradation to butanol
AYJ57_13700	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AYJ57_13700	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AYJ57_13700	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AYJ57_13705	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_13705	PWY-6596	adenosine nucleotides degradation I
AYJ57_13705	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AYJ57_13815	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_13985	PWY-7980	AYJ57_13985
AYJ57_14020	PWY-7980	AYJ57_14020
AYJ57_14070	PWY-5392	reductive TCA cycle II
AYJ57_14070	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AYJ57_14070	PWY-5690	TCA cycle II (plants and fungi)
AYJ57_14070	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_14070	PWY-6728	methylaspartate cycle
AYJ57_14070	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_14070	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_14070	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AYJ57_14325	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYJ57_14325	PWY-5491	diethylphosphate degradation
AYJ57_14365	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AYJ57_14365	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYJ57_14365	PWY-7961	AYJ57_14365
AYJ57_14365	PWY-7963	AYJ57_14365
AYJ57_14365	PWY-7964	AYJ57_14365
AYJ57_14365	PWY-7965	AYJ57_14365
AYJ57_14365	PWY-7966	AYJ57_14365
AYJ57_14365	PWY-7967	AYJ57_14365
AYJ57_14365	PWY-7968	AYJ57_14365
AYJ57_14365	PWY-7969	AYJ57_14365
AYJ57_14365	PWY-7970	AYJ57_14365
AYJ57_14365	PWY-7975	AYJ57_14365
AYJ57_14370	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AYJ57_14370	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYJ57_14370	PWY-7964	AYJ57_14370
AYJ57_14370	PWY-7965	AYJ57_14370
AYJ57_14370	PWY-7966	AYJ57_14370
AYJ57_14370	PWY-7967	AYJ57_14370
AYJ57_14370	PWY-7968	AYJ57_14370
AYJ57_14370	PWY-7969	AYJ57_14370
AYJ57_14370	PWY-7970	AYJ57_14370
AYJ57_14375	PWY-6269	adenosylcobalamin salvage from cobinamide II
AYJ57_14375	PWY-7962	AYJ57_14375
AYJ57_14375	PWY-7971	AYJ57_14375
AYJ57_14375	PWY-7972	AYJ57_14375
AYJ57_14395	PWY-5443	aminopropanol phosphate biosynthesis I
AYJ57_14425	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AYJ57_14425	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AYJ57_14425	PWY-7766	AYJ57_14425
AYJ57_14430	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AYJ57_14430	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AYJ57_14560	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AYJ57_14690	PWY-181	photorespiration
AYJ57_14715	PWY-4261	glycerol degradation I
AYJ57_14725	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_14725	PWY-7761	AYJ57_14725
AYJ57_14845	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AYJ57_14845	PWY-2201	folate transformations I
AYJ57_14845	PWY-3841	folate transformations II
AYJ57_14845	PWY-5030	L-histidine degradation III
AYJ57_14845	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_14845	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AYJ57_14845	PWY-7909	AYJ57_14845
AYJ57_14850	PWY-3461	L-tyrosine biosynthesis II
AYJ57_14850	PWY-3462	L-phenylalanine biosynthesis II
AYJ57_14850	PWY-6120	L-tyrosine biosynthesis III
AYJ57_14850	PWY-6406	salicylate biosynthesis I
AYJ57_14850	PWY-6627	salinosporamide A biosynthesis
AYJ57_14850	PWY-7626	bacilysin biosynthesis
AYJ57_14855	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AYJ57_14855	PWY-2161	folate polyglutamylation
AYJ57_14855	PWY-2201	folate transformations I
AYJ57_14855	PWY-3841	folate transformations II
AYJ57_15000	PWY-6840	homoglutathione biosynthesis
AYJ57_15000	PWY-7255	ergothioneine biosynthesis I (bacteria)
AYJ57_15050	PWY-7942	AYJ57_15050
AYJ57_15060	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AYJ57_15065	PWY-5350	thiosulfate disproportionation III (rhodanese)
AYJ57_15065	PWY-7927	AYJ57_15065
AYJ57_15150	PWY-5386	methylglyoxal degradation I
AYJ57_15165	PWY-5074	mevalonate degradation
AYJ57_15185	PWY-6174	mevalonate pathway II (archaea)
AYJ57_15185	PWY-7391	isoprene biosynthesis II (engineered)
AYJ57_15185	PWY-7524	mevalonate pathway III (archaea)
AYJ57_15185	PWY-922	mevalonate pathway I
AYJ57_15415	PWY-381	nitrate reduction II (assimilatory)
AYJ57_15415	PWY-5675	nitrate reduction V (assimilatory)
AYJ57_15415	PWY-6549	L-glutamine biosynthesis III
AYJ57_15415	PWY-6963	ammonia assimilation cycle I
AYJ57_15415	PWY-6964	ammonia assimilation cycle II
AYJ57_15460	PWY-4981	L-proline biosynthesis II (from arginine)
AYJ57_15460	PWY-4984	urea cycle
AYJ57_15460	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_15540	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_15660	PWY-3341	L-proline biosynthesis III
AYJ57_15660	PWY-4981	L-proline biosynthesis II (from arginine)
AYJ57_15660	PWY-6344	L-ornithine degradation II (Stickland reaction)
AYJ57_15925	PWY-4041	&gamma;-glutamyl cycle
AYJ57_15925	PWY-4061	glutathione-mediated detoxification I
AYJ57_15925	PWY-5826	hypoglycin biosynthesis
AYJ57_15925	PWY-6842	glutathione-mediated detoxification II
AYJ57_15925	PWY-7112	4-hydroxy-2-nonenal detoxification
AYJ57_15925	PWY-7559	glutathione degradation (DUG pathway - yeast)
AYJ57_16040	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_16040	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_16040	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AYJ57_16040	PWY-6596	adenosine nucleotides degradation I
AYJ57_16040	PWY-6606	guanosine nucleotides degradation II
AYJ57_16040	PWY-6607	guanosine nucleotides degradation I
AYJ57_16040	PWY-6608	guanosine nucleotides degradation III
AYJ57_16040	PWY-6999	theophylline degradation
AYJ57_16045	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_16045	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_16045	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AYJ57_16045	PWY-6596	adenosine nucleotides degradation I
AYJ57_16045	PWY-6606	guanosine nucleotides degradation II
AYJ57_16045	PWY-6607	guanosine nucleotides degradation I
AYJ57_16045	PWY-6608	guanosine nucleotides degradation III
AYJ57_16045	PWY-6999	theophylline degradation
AYJ57_16060	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_16060	PWY-6606	guanosine nucleotides degradation II
AYJ57_16060	PWY-6608	guanosine nucleotides degradation III
AYJ57_16060	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AYJ57_16065	PWY-5692	allantoin degradation to glyoxylate II
AYJ57_16065	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AYJ57_16075	PWY-6832	2-aminoethylphosphonate degradation II
AYJ57_16085	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_16100	PWY-5694	allantoin degradation to glyoxylate I
AYJ57_16100	PWY-5705	allantoin degradation to glyoxylate III
AYJ57_16105	PWY-5691	urate degradation to allantoin I
AYJ57_16105	PWY-7394	urate degradation to allantoin II
AYJ57_16105	PWY-7849	AYJ57_16105
AYJ57_16175	PWY-6317	galactose degradation I (Leloir pathway)
AYJ57_16190	PWY-5101	L-isoleucine biosynthesis II
AYJ57_16190	PWY-5103	L-isoleucine biosynthesis III
AYJ57_16190	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_16190	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_16300	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYJ57_16300	PWY-5109	2-methylbutanoate biosynthesis
AYJ57_16300	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYJ57_16300	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYJ57_16300	PWY-5177	glutaryl-CoA degradation
AYJ57_16300	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_16300	PWY-6435	4-hydroxybenzoate biosynthesis V
AYJ57_16300	PWY-6583	pyruvate fermentation to butanol I
AYJ57_16300	PWY-6863	pyruvate fermentation to hexanol
AYJ57_16300	PWY-6883	pyruvate fermentation to butanol II
AYJ57_16300	PWY-6944	androstenedione degradation
AYJ57_16300	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYJ57_16300	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYJ57_16300	PWY-7007	methyl ketone biosynthesis
AYJ57_16300	PWY-7046	4-coumarate degradation (anaerobic)
AYJ57_16300	PWY-7094	fatty acid salvage
AYJ57_16300	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYJ57_16300	PWY-735	jasmonic acid biosynthesis
AYJ57_16300	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYJ57_16300	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYJ57_16300	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYJ57_16300	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYJ57_16300	PWY-7726	AYJ57_16300
AYJ57_16300	PWY-7778	AYJ57_16300
AYJ57_16300	PWY-7779	AYJ57_16300
AYJ57_16310	PWY-31	canavanine degradation
AYJ57_16310	PWY-4984	urea cycle
AYJ57_16310	PWY-6305	putrescine biosynthesis IV
AYJ57_16310	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AYJ57_16465	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYJ57_16465	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYJ57_16465	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AYJ57_16470	PWY-1622	formaldehyde assimilation I (serine pathway)
AYJ57_16470	PWY-181	photorespiration
AYJ57_16470	PWY-2161	folate polyglutamylation
AYJ57_16470	PWY-2201	folate transformations I
AYJ57_16470	PWY-3661	glycine betaine degradation I
AYJ57_16470	PWY-3661-1	glycine betaine degradation II (mammalian)
AYJ57_16470	PWY-3841	folate transformations II
AYJ57_16470	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_16500	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AYJ57_16530	PWY-2941	L-lysine biosynthesis II
AYJ57_16530	PWY-2942	L-lysine biosynthesis III
AYJ57_16530	PWY-5097	L-lysine biosynthesis VI
AYJ57_16555	PWY-6123	inosine-5'-phosphate biosynthesis I
AYJ57_16555	PWY-6124	inosine-5'-phosphate biosynthesis II
AYJ57_16555	PWY-7234	inosine-5'-phosphate biosynthesis III
AYJ57_16565	PWY-7884	AYJ57_16565
AYJ57_16585	PWY-2941	L-lysine biosynthesis II
AYJ57_16585	PWY-2942	L-lysine biosynthesis III
AYJ57_16585	PWY-5097	L-lysine biosynthesis VI
AYJ57_16620	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_16620	PWY-5686	UMP biosynthesis
AYJ57_16620	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AYJ57_16620	PWY-7790	AYJ57_16620
AYJ57_16620	PWY-7791	AYJ57_16620
AYJ57_16645	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_16645	PWY-4521	arsenite oxidation I (respiratory)
AYJ57_16645	PWY-6692	Fe(II) oxidation
AYJ57_16645	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_16660	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_16685	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_16685	PWY-5743	3-hydroxypropanoate cycle
AYJ57_16685	PWY-5744	glyoxylate assimilation
AYJ57_16685	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_16685	PWY-6722	candicidin biosynthesis
AYJ57_16755	PWY-6749	CMP-legionaminate biosynthesis I
AYJ57_16760	PWY-6614	tetrahydrofolate biosynthesis
AYJ57_16765	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AYJ57_16765	PWY-6148	tetrahydromethanopterin biosynthesis
AYJ57_16765	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AYJ57_16765	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AYJ57_16775	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYJ57_16775	PWY-6549	L-glutamine biosynthesis III
AYJ57_16775	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AYJ57_16775	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_16845	PWY-5386	methylglyoxal degradation I
AYJ57_16855	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYJ57_16855	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYJ57_16925	PWY-6832	2-aminoethylphosphonate degradation II
AYJ57_16940	PWY-5103	L-isoleucine biosynthesis III
AYJ57_16940	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_16980	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_16990	PWY-7205	CMP phosphorylation
AYJ57_17045	PWY-6556	pyrimidine ribonucleosides salvage II
AYJ57_17045	PWY-7181	pyrimidine deoxyribonucleosides degradation
AYJ57_17045	PWY-7193	pyrimidine ribonucleosides salvage I
AYJ57_17045	PWY-7199	pyrimidine deoxyribonucleosides salvage
AYJ57_17050	PWY-7181	pyrimidine deoxyribonucleosides degradation
AYJ57_17055	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AYJ57_17065	PWY-7183	pyrimidine nucleobases salvage I
AYJ57_17295	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_17295	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AYJ57_17295	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AYJ57_17295	PWY-6596	adenosine nucleotides degradation I
AYJ57_17295	PWY-6606	guanosine nucleotides degradation II
AYJ57_17295	PWY-6607	guanosine nucleotides degradation I
AYJ57_17295	PWY-6608	guanosine nucleotides degradation III
AYJ57_17295	PWY-6999	theophylline degradation
AYJ57_17340	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_17340	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_17340	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_17340	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_17340	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_17340	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_17340	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_17340	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_17725	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_17735	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AYJ57_17735	PWY-581	indole-3-acetate biosynthesis II
AYJ57_17735	PWY-7308	acrylonitrile degradation I
AYJ57_17740	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AYJ57_17740	PWY-581	indole-3-acetate biosynthesis II
AYJ57_17740	PWY-7308	acrylonitrile degradation I
AYJ57_17745	PWY-5025	indole-3-acetate biosynthesis IV (bacteria)
AYJ57_17745	PWY-581	indole-3-acetate biosynthesis II
AYJ57_17745	PWY-7308	acrylonitrile degradation I
AYJ57_17770	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_17775	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_18130	PWY-4381	fatty acid biosynthesis initiation I
AYJ57_18130	PWY-5743	3-hydroxypropanoate cycle
AYJ57_18130	PWY-5744	glyoxylate assimilation
AYJ57_18130	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_18130	PWY-6722	candicidin biosynthesis
AYJ57_18145	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYJ57_18145	PWY-7494	choline degradation IV
AYJ57_18150	PWY-5101	L-isoleucine biosynthesis II
AYJ57_18150	PWY-5103	L-isoleucine biosynthesis III
AYJ57_18150	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_18150	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_18260	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_18260	PWY-5723	Rubisco shunt
AYJ57_18270	PWY-5532	adenosine nucleotides degradation IV
AYJ57_18270	PWY-5723	Rubisco shunt
AYJ57_18275	PWY-5532	adenosine nucleotides degradation IV
AYJ57_18275	PWY-5723	Rubisco shunt
AYJ57_18280	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_18280	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_18280	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_18280	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_18280	PWY-7385	1,3-propanediol biosynthesis (engineered)
AYJ57_18285	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_18285	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_18285	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_18285	PWY-7003	glycerol degradation to butanol
AYJ57_18290	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AYJ57_18290	PWY-5723	Rubisco shunt
AYJ57_18290	PWY-6891	thiazole biosynthesis II (Bacillus)
AYJ57_18290	PWY-6892	thiazole biosynthesis I (E. coli)
AYJ57_18290	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_18290	PWY-7560	methylerythritol phosphate pathway II
AYJ57_18295	PWY-5723	Rubisco shunt
AYJ57_18300	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_18375	PWY-7701	AYJ57_18375
AYJ57_18520	PWY-1042	glycolysis IV (plant cytosol)
AYJ57_18520	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_18520	PWY-6901	superpathway of glucose and xylose degradation
AYJ57_18520	PWY-7003	glycerol degradation to butanol
AYJ57_18560	PWY-6486	D-galacturonate degradation II
AYJ57_18560	PWY-6497	D-galactarate degradation II
AYJ57_18560	PWY-6499	D-glucarate degradation II
AYJ57_18560	PWY-6501	D-glucuronate degradation II
AYJ57_18625	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_18630	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_18630	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AYJ57_18760	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_18830	PWY-7855	AYJ57_18830
AYJ57_19000	PWY-381	nitrate reduction II (assimilatory)
AYJ57_19000	PWY-5675	nitrate reduction V (assimilatory)
AYJ57_19000	PWY-6549	L-glutamine biosynthesis III
AYJ57_19000	PWY-6963	ammonia assimilation cycle I
AYJ57_19000	PWY-6964	ammonia assimilation cycle II
AYJ57_19030	PWY-6683	sulfate reduction III (assimilatory)
AYJ57_19215	PWY-7799	AYJ57_19215
AYJ57_19215	PWY-7800	AYJ57_19215
AYJ57_19245	PWY-6936	seleno-amino acid biosynthesis
AYJ57_19245	PWY-7274	D-cycloserine biosynthesis
AYJ57_19245	PWY-7870	AYJ57_19245
AYJ57_19315	PWY-7805	AYJ57_19315
AYJ57_19315	PWY-7807	AYJ57_19315
AYJ57_19325	PWY-1281	sulfoacetaldehyde degradation I
AYJ57_19325	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AYJ57_19325	PWY-5482	pyruvate fermentation to acetate II
AYJ57_19325	PWY-5485	pyruvate fermentation to acetate IV
AYJ57_19325	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_19325	PWY-6637	sulfolactate degradation II
AYJ57_19325	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AYJ57_19335	PWY-5108	L-isoleucine biosynthesis V
AYJ57_19335	PWY-5132	humulone biosynthesis
AYJ57_19335	PWY-5133	cohumulone biosynthesis
AYJ57_19335	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AYJ57_19335	PWY-7118	chitin degradation to ethanol
AYJ57_19335	PWY-7857	AYJ57_19335
AYJ57_19350	PWY-3661	glycine betaine degradation I
AYJ57_19350	PWY-4722	creatinine degradation II
AYJ57_19355	PWY-3661	glycine betaine degradation I
AYJ57_19355	PWY-4722	creatinine degradation II
AYJ57_19360	PWY-3661	glycine betaine degradation I
AYJ57_19360	PWY-4722	creatinine degradation II
AYJ57_19365	PWY-3661	glycine betaine degradation I
AYJ57_19365	PWY-4722	creatinine degradation II
AYJ57_19370	PWY-1622	formaldehyde assimilation I (serine pathway)
AYJ57_19370	PWY-181	photorespiration
AYJ57_19370	PWY-2161	folate polyglutamylation
AYJ57_19370	PWY-2201	folate transformations I
AYJ57_19370	PWY-3661	glycine betaine degradation I
AYJ57_19370	PWY-3661-1	glycine betaine degradation II (mammalian)
AYJ57_19370	PWY-3841	folate transformations II
AYJ57_19370	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_19375	PWY-2201	folate transformations I
AYJ57_19375	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_19375	PWY-7909	AYJ57_19375
AYJ57_19405	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYJ57_19405	PWY-7494	choline degradation IV
AYJ57_19410	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AYJ57_19410	PWY-7494	choline degradation IV
AYJ57_19490	PWY-6610	adenine and adenosine salvage IV
AYJ57_19500	PWY-5506	methanol oxidation to formaldehyde IV
AYJ57_19585	PWY-5506	methanol oxidation to formaldehyde IV
AYJ57_19610	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_19610	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_19610	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_19610	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_19610	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_19610	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_19610	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_19610	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_19615	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_19615	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_19615	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_19615	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_19615	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_19615	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_19615	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_19615	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_19620	PWY-7165	L-ascorbate biosynthesis VI (engineered pathway)
AYJ57_19640	PWY-4261	glycerol degradation I
AYJ57_19680	PWY-4261	glycerol degradation I
AYJ57_19680	PWY-6118	glycerol-3-phosphate shuttle
AYJ57_19680	PWY-6952	glycerophosphodiester degradation
AYJ57_19725	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AYJ57_19750	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AYJ57_19805	PWY-2941	L-lysine biosynthesis II
AYJ57_19805	PWY-2942	L-lysine biosynthesis III
AYJ57_19805	PWY-5097	L-lysine biosynthesis VI
AYJ57_20050	PWY-7892	AYJ57_20050
AYJ57_20185	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_20225	PWY-5940	streptomycin biosynthesis
AYJ57_20225	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
AYJ57_20225	PWY-7241	<I>myo</I>-inositol degradation II
AYJ57_20290	PWY-5751	phenylethanol biosynthesis
AYJ57_20320	PWY-5747	2-methylcitrate cycle II
AYJ57_20470	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_20470	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_20470	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_20470	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_20470	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_20470	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_20470	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_20470	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_20475	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AYJ57_20475	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_20475	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AYJ57_20475	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AYJ57_20475	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_20475	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AYJ57_20475	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AYJ57_20475	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AYJ57_20555	PWY-6349	CDP-archaeol biosynthesis
AYJ57_20570	PWY-7731	AYJ57_20570
AYJ57_20590	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_20595	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_20595	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYJ57_20595	PWY-7761	AYJ57_20595
AYJ57_21115	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AYJ57_21115	PWY-5491	diethylphosphate degradation
AYJ57_21210	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_21220	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AYJ57_21220	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AYJ57_22205	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_22290	PWY-2201	folate transformations I
AYJ57_22290	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_22290	PWY-7909	AYJ57_22290
AYJ57_22295	PWY-3661	glycine betaine degradation I
AYJ57_22295	PWY-4722	creatinine degradation II
AYJ57_22300	PWY-3661	glycine betaine degradation I
AYJ57_22300	PWY-4722	creatinine degradation II
AYJ57_22305	PWY-3661	glycine betaine degradation I
AYJ57_22305	PWY-4722	creatinine degradation II
AYJ57_22310	PWY-3661	glycine betaine degradation I
AYJ57_22310	PWY-4722	creatinine degradation II
AYJ57_22340	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AYJ57_22340	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AYJ57_22340	PWY-6406	salicylate biosynthesis I
AYJ57_22375	PWY-6164	3-dehydroquinate biosynthesis I
AYJ57_22460	PWY-6041	4-sulfocatechol degradation
AYJ57_22465	PWY-6041	4-sulfocatechol degradation
AYJ57_22475	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AYJ57_22490	PWY-40	putrescine biosynthesis I
AYJ57_22490	PWY-43	putrescine biosynthesis II
AYJ57_22490	PWY-6173	histamine biosynthesis
AYJ57_22490	PWY-6305	putrescine biosynthesis IV
AYJ57_22490	PWY-6834	spermidine biosynthesis III
AYJ57_22515	PWY-6409	pyoverdine I biosynthesis
AYJ57_22515	PWY-6562	norspermidine biosynthesis
AYJ57_22515	PWY-761	rhizobactin 1021 biosynthesis
AYJ57_22515	PWY-7855	AYJ57_22515
AYJ57_22515	PWY-7988	AYJ57_22515
AYJ57_22530	PWY-6562	norspermidine biosynthesis
AYJ57_22580	PWY-5659	GDP-mannose biosynthesis
AYJ57_22580	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AYJ57_22585	PWY-6749	CMP-legionaminate biosynthesis I
AYJ57_22655	PWY-7980	AYJ57_22655
AYJ57_22700	PWY-5913	TCA cycle VI (obligate autotrophs)
AYJ57_22700	PWY-6549	L-glutamine biosynthesis III
AYJ57_22700	PWY-6728	methylaspartate cycle
AYJ57_22700	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AYJ57_22700	PWY-7124	ethylene biosynthesis V (engineered)
AYJ57_22700	PWY-7254	TCA cycle VII (acetate-producers)
AYJ57_22700	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AYJ57_22720	PWY-3781	aerobic respiration I (cytochrome c)
AYJ57_22720	PWY-4521	arsenite oxidation I (respiratory)
AYJ57_22720	PWY-6692	Fe(II) oxidation
AYJ57_22720	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AYJ57_22770	PWY-5691	urate degradation to allantoin I
AYJ57_22770	PWY-7394	urate degradation to allantoin II
AYJ57_22770	PWY-7849	AYJ57_22770
AYJ57_22875	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AYJ57_22875	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AYJ57_22890	PWY-1881	formate oxidation to CO<sub>2</sub>
AYJ57_22890	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_22890	PWY-6696	oxalate degradation III
AYJ57_22890	PWY-7985	AYJ57_22890
AYJ57_22910	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_22920	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AYJ57_22920	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AYJ57_22970	PWY-7242	D-fructuronate degradation
AYJ57_22975	PWY-6531	mannitol cycle
AYJ57_22990	PWY-6854	ethylene biosynthesis III (microbes)
AYJ57_23370	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AYJ57_23370	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AYJ57_23370	PWY-6897	thiamin salvage II
AYJ57_23370	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AYJ57_23370	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AYJ57_23370	PWY-7356	thiamin salvage IV (yeast)
AYJ57_23370	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AYJ57_23375	PWY-6891	thiazole biosynthesis II (Bacillus)
AYJ57_23375	PWY-6892	thiazole biosynthesis I (E. coli)
AYJ57_23390	PWY-5316	nicotine biosynthesis
AYJ57_23390	PWY-7342	superpathway of nicotine biosynthesis
AYJ57_23400	PWY-5316	nicotine biosynthesis
AYJ57_23400	PWY-5381	pyridine nucleotide cycling (plants)
AYJ57_23400	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AYJ57_23400	PWY-7342	superpathway of nicotine biosynthesis
AYJ57_23465	PWY-4041	&gamma;-glutamyl cycle
AYJ57_23465	PWY-7942	AYJ57_23465
AYJ57_23470	PWY-4041	&gamma;-glutamyl cycle
AYJ57_23470	PWY-7942	AYJ57_23470
AYJ57_23530	PWY-5101	L-isoleucine biosynthesis II
AYJ57_23530	PWY-5103	L-isoleucine biosynthesis III
AYJ57_23530	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_23530	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_23550	PWY-7799	AYJ57_23550
AYJ57_23550	PWY-7800	AYJ57_23550
AYJ57_23630	PWY-6420	pyrroloquinoline quinone biosynthesis
AYJ57_23640	PWY-6823	molybdenum cofactor biosynthesis
AYJ57_23665	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_23710	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_23710	PWY-3162	L-tryptophan degradation V (side chain pathway)
AYJ57_23710	PWY-5057	L-valine degradation II
AYJ57_23710	PWY-5076	L-leucine degradation III
AYJ57_23710	PWY-5078	L-isoleucine degradation II
AYJ57_23710	PWY-5079	L-phenylalanine degradation III
AYJ57_23710	PWY-5082	L-methionine degradation III
AYJ57_23710	PWY-5480	pyruvate fermentation to ethanol I
AYJ57_23710	PWY-5486	pyruvate fermentation to ethanol II
AYJ57_23710	PWY-5751	phenylethanol biosynthesis
AYJ57_23710	PWY-6313	serotonin degradation
AYJ57_23710	PWY-6333	acetaldehyde biosynthesis I
AYJ57_23710	PWY-6342	noradrenaline and adrenaline degradation
AYJ57_23710	PWY-6587	pyruvate fermentation to ethanol III
AYJ57_23710	PWY-6802	salidroside biosynthesis
AYJ57_23710	PWY-6871	3-methylbutanol biosynthesis
AYJ57_23710	PWY-7013	L-1,2-propanediol degradation
AYJ57_23710	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_23710	PWY-7118	chitin degradation to ethanol
AYJ57_23710	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AYJ57_23710	PWY-7798	AYJ57_23710
AYJ57_23715	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AYJ57_23800	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_23875	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_23950	PWY-6167	flavin biosynthesis II (archaea)
AYJ57_24105	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_24110	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_24110	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_24125	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AYJ57_24125	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AYJ57_24145	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_24150	PWY-5484	glycolysis II (from fructose 6-phosphate)
AYJ57_24150	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AYJ57_24165	PWY-1361	benzoyl-CoA degradation I (aerobic)
AYJ57_24165	PWY-5109	2-methylbutanoate biosynthesis
AYJ57_24165	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AYJ57_24165	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AYJ57_24165	PWY-5177	glutaryl-CoA degradation
AYJ57_24165	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AYJ57_24165	PWY-6435	4-hydroxybenzoate biosynthesis V
AYJ57_24165	PWY-6583	pyruvate fermentation to butanol I
AYJ57_24165	PWY-6863	pyruvate fermentation to hexanol
AYJ57_24165	PWY-6883	pyruvate fermentation to butanol II
AYJ57_24165	PWY-6944	androstenedione degradation
AYJ57_24165	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AYJ57_24165	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AYJ57_24165	PWY-7007	methyl ketone biosynthesis
AYJ57_24165	PWY-7046	4-coumarate degradation (anaerobic)
AYJ57_24165	PWY-7094	fatty acid salvage
AYJ57_24165	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AYJ57_24165	PWY-735	jasmonic acid biosynthesis
AYJ57_24165	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AYJ57_24165	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AYJ57_24165	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AYJ57_24165	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AYJ57_24165	PWY-7726	AYJ57_24165
AYJ57_24165	PWY-7778	AYJ57_24165
AYJ57_24165	PWY-7779	AYJ57_24165
AYJ57_24245	PWY-7533	gliotoxin biosynthesis
AYJ57_24365	PWY-2661	trehalose biosynthesis V
AYJ57_24370	PWY-2661	trehalose biosynthesis V
AYJ57_24535	PWY-5101	L-isoleucine biosynthesis II
AYJ57_24535	PWY-5103	L-isoleucine biosynthesis III
AYJ57_24535	PWY-5104	L-isoleucine biosynthesis IV
AYJ57_24535	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AYJ57_24620	PWY-2941	L-lysine biosynthesis II
AYJ57_24620	PWY-2942	L-lysine biosynthesis III
AYJ57_24620	PWY-5097	L-lysine biosynthesis VI
AYJ57_24665	PWY-5694	allantoin degradation to glyoxylate I
AYJ57_24665	PWY-5705	allantoin degradation to glyoxylate III
AYJ57_24690	PWY-6906	chitin derivatives degradation
AYJ57_24690	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AYJ57_24690	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AYJ57_24700	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AYJ57_24700	PWY-6855	chitin degradation I (archaea)
AYJ57_24700	PWY-6906	chitin derivatives degradation
AYJ57_24770	PWY-7425	2-chloroacrylate degradation I
AYJ57_24775	PWY-5692	allantoin degradation to glyoxylate II
AYJ57_24775	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AYJ57_24780	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AYJ57_24880	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_24890	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AYJ57_24940	PWY-6986	alginate degradation
AYJ57_24980	PWY-5659	GDP-mannose biosynthesis
AYJ57_24980	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AYJ57_24995	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AYJ57_24995	PWY-7820	AYJ57_24995
AYJ57_25070	PWY-6745	phytochelatins biosynthesis
AYJ57_25100	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AYJ57_25100	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AYJ57_25100	PWY-6936	seleno-amino acid biosynthesis
AYJ57_25100	PWY-702	L-methionine biosynthesis II
AYJ57_25215	PWY-1622	formaldehyde assimilation I (serine pathway)
AYJ57_25215	PWY-181	photorespiration
AYJ57_25215	PWY-2161	folate polyglutamylation
AYJ57_25215	PWY-2201	folate transformations I
AYJ57_25215	PWY-3661	glycine betaine degradation I
AYJ57_25215	PWY-3661-1	glycine betaine degradation II (mammalian)
AYJ57_25215	PWY-3841	folate transformations II
AYJ57_25215	PWY-5497	purine nucleobases degradation II (anaerobic)
AYJ57_25280	PWY-5278	sulfite oxidation III
AYJ57_25280	PWY-5340	sulfate activation for sulfonation
AYJ57_25280	PWY-6683	sulfate reduction III (assimilatory)
AYJ57_25280	PWY-6932	selenate reduction
AYJ57_25335	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AYJ57_25335	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AYJ57_25335	PWY-7622	UDP-galactofuranose biosynthesis
AYJ57_25415	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AYJ57_25415	PWY-7820	AYJ57_25415
AYJ57_25435	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYJ57_25435	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AYJ57_25440	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AYJ57_25445	PWY-3221	dTDP-L-rhamnose biosynthesis II
AYJ57_25445	PWY-6808	dTDP-D-forosamine biosynthesis
AYJ57_25445	PWY-6942	dTDP-D-desosamine biosynthesis
AYJ57_25445	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AYJ57_25445	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AYJ57_25445	PWY-6974	dTDP-L-olivose biosynthesis
AYJ57_25445	PWY-6976	dTDP-L-mycarose biosynthesis
AYJ57_25445	PWY-7104	dTDP-L-megosamine biosynthesis
AYJ57_25445	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AYJ57_25445	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AYJ57_25445	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AYJ57_25445	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AYJ57_25445	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AYJ57_25445	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AYJ57_25445	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AYJ57_25445	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AYJ57_25445	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AYJ57_25445	PWY-7688	AYJ57_25445
AYJ57_25445	PWY-7814	AYJ57_25445
