AT01_1	PF00072	Response regulator receiver domain
AT01_10	PF00419	Fimbrial protein
AT01_100	PF01052	Surface presentation of antigens (SPOA)
AT01_100	PF02154	Flagellar motor switch protein FliM
AT01_1000	PF03956	AT01_1000
AT01_1001	PF03063	Prismane/CO dehydrogenase family
AT01_1002	PF00111	2Fe-2S iron-sulfur cluster binding domain
AT01_1002	PF00175	Oxidoreductase NAD-binding domain
AT01_1002	PF00970	Oxidoreductase FAD-binding domain
AT01_1003	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_1003	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_1003	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_1004	PF04072	Leucine carboxyl methyltransferase
AT01_1005	PF01212	Beta-eliminating lyase
AT01_1006	PF11066	AT01_1006
AT01_1006	PF13460	NADH(P)-binding
AT01_1007	PF01370	NAD dependent epimerase/dehydratase family
AT01_1008	PF12883	Protein of unknown function (DUF3828)
AT01_1009	PF00005	ABC transporter
AT01_101	PF03748	AT01_101
AT01_1010	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1011	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1012	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1013	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1014	PF05958	tRNA (Uracil-5-)-methyltransferase
AT01_1015	PF10767	AT01_1015
AT01_1016	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1017	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1018	PF00005	ABC transporter
AT01_1018	PF08402	TOBE domain
AT01_1019	PF13416	Bacterial extracellular solute-binding protein
AT01_102	PF02120	Flagellar hook-length control protein FliK
AT01_1020	PF10722	Putative bacterial sensory transduction regulator
AT01_1021	PF07214	AT01_1021
AT01_1022	PF00462	Glutaredoxin
AT01_1023	PF02080	TrkA-C domain
AT01_1023	PF06826	AT01_1023
AT01_1025	PF10908	AT01_1025
AT01_1028	PF01569	PAP2 superfamily
AT01_1029	PF01791	DeoC/LacD family aldolase
AT01_103	PF02050	Flagellar FliJ protein
AT01_1030	PF00455	AT01_1030
AT01_1030	PF08220	DeoR-like helix-turn-helix domain
AT01_1031	PF03222	Tryptophan/tyrosine permease family
AT01_1032	PF03313	AT01_1032
AT01_1032	PF03315	Serine dehydratase beta chain
AT01_1033	PF00768	D-alanyl-D-alanine carboxypeptidase
AT01_1033	PF07943	Penicillin-binding protein 5, C-terminal domain
AT01_1034	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_1034	PF00571	CBS domain
AT01_1035	PF01053	Cys/Met metabolism PLP-dependent enzyme
AT01_1036	PF03171	2OG-Fe(II) oxygenase superfamily
AT01_1036	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
AT01_1039	PF12710	haloacid dehalogenase-like hydrolase
AT01_104	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_1040	PF00043	Glutathione S-transferase, C-terminal domain
AT01_1040	PF13417	Glutathione S-transferase, N-terminal domain
AT01_1041	PF00593	TonB dependent receptor
AT01_1041	PF07715	TonB-dependent Receptor Plug Domain
AT01_1042	PF00005	ABC transporter
AT01_1043	PF01032	FecCD transport family
AT01_1044	PF01497	Periplasmic binding protein
AT01_1045	PF00324	Amino acid permease
AT01_1046	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1046	PF03466	LysR substrate binding domain
AT01_1047	PF03601	AT01_1047
AT01_1048	PF01261	Xylose isomerase-like TIM barrel
AT01_1049	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AT01_1049	PF02378	Phosphotransferase system, EIIC
AT01_105	PF02108	AT01_105
AT01_1050	PF00294	pfkB family carbohydrate kinase
AT01_1051	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_1051	PF00381	PTS HPr component phosphorylation site
AT01_1052	PF00293	NUDIX domain
AT01_1053	PF03264	NapC/NirT cytochrome c family, N-terminal region
AT01_1054	PF00384	Molybdopterin oxidoreductase
AT01_1054	PF01568	Molydopterin dinucleotide binding domain
AT01_1055	PF03692	AT01_1055
AT01_1056	PF03222	Tryptophan/tyrosine permease family
AT01_1057	PF01132	Elongation factor P (EF-P) OB domain
AT01_1057	PF08207	Elongation factor P (EF-P) KOW-like domain
AT01_1057	PF09285	Elongation factor P, C-terminal
AT01_1058	PF03786	D-mannonate dehydratase (UxuA)
AT01_1059	PF01232	Mannitol dehydrogenase Rossmann domain
AT01_1059	PF08125	Mannitol dehydrogenase C-terminal domain
AT01_106	PF01706	FliG C-terminal domain
AT01_106	PF14841	FliG middle domain
AT01_106	PF14842	FliG N-terminal domain
AT01_1060	PF00392	Bacterial regulatory proteins, gntR family
AT01_1060	PF07729	FCD domain
AT01_1062	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AT01_1062	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AT01_1063	PF01569	PAP2 superfamily
AT01_1064	PF00877	NlpC/P60 family
AT01_1065	PF00563	EAL domain
AT01_1065	PF12792	AT01_1065
AT01_1066	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_1067	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1068	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1068	PF12911	AT01_1068
AT01_1069	PF00005	ABC transporter
AT01_1069	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_107	PF01514	Secretory protein of YscJ/FliF family
AT01_107	PF08345	AT01_107
AT01_1070	PF13989	AT01_1070
AT01_1071	PF07690	Major Facilitator Superfamily
AT01_1072	PF00849	RNA pseudouridylate synthase
AT01_1072	PF01479	S4 domain
AT01_1073	PF00271	Helicase conserved C-terminal domain
AT01_1073	PF04851	Type III restriction enzyme, res subunit
AT01_1074	PF01386	Ribosomal L25p family
AT01_1075	PF04245	AT01_1075
AT01_1076	PF07208	Protein of unknown function (DUF1414)
AT01_1077	PF00884	Sulfatase
AT01_1077	PF11893	AT01_1077
AT01_108	PF02049	AT01_108
AT01_1081	PF07377	Protein of unknown function (DUF1493)
AT01_1082	PF02413	AT01_1082
AT01_1083	PF09831	AT01_1083
AT01_1084	PF00849	RNA pseudouridylate synthase
AT01_1085	PF06183	DinI-like family
AT01_1087	PF12706	Beta-lactamase superfamily domain
AT01_1088	PF00144	Beta-lactamase
AT01_109	PF00730	HhH-GPD superfamily base excision DNA repair protein
AT01_1090	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AT01_1091	PF05681	AT01_1091
AT01_1091	PF05683	Fumarase C-terminus
AT01_1092	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1092	PF03466	LysR substrate binding domain
AT01_1093	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_1094	PF00288	GHMP kinases N terminal domain
AT01_1095	PF02310	B12 binding domain
AT01_1096	PF13941	AT01_1096
AT01_1097	PF06368	Methylaspartate mutase E chain (MutE)
AT01_1098	PF05034	Methylaspartate ammonia-lyase N-terminus
AT01_1098	PF07476	Methylaspartate ammonia-lyase C-terminus
AT01_1099	PF07287	AT01_1099
AT01_11	PF00072	Response regulator receiver domain
AT01_11	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_11	PF00512	His Kinase A (phospho-acceptor) domain
AT01_11	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_110	PF13487	HD domain
AT01_1100	PF14330	AT01_1100
AT01_1101	PF00375	Sodium:dicarboxylate symporter family
AT01_1104	PF01312	FlhB HrpN YscU SpaS Family
AT01_1105	PF01311	AT01_1105
AT01_1106	PF01313	AT01_1106
AT01_1107	PF00813	AT01_1107
AT01_1108	PF01052	Surface presentation of antigens (SPOA)
AT01_111	PF12833	Helix-turn-helix domain
AT01_1111	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_1112	PF00771	FHIPEP family
AT01_1114	PF07201	HrpJ-like domain
AT01_1116	PF13327	AT01_1116
AT01_1117	PF01514	Secretory protein of YscJ/FliF family
AT01_1119	PF06287	AT01_1119
AT01_112	PF05400	Flagellar protein FliT
AT01_1120	PF09392	Type III secretion needle MxiH like
AT01_1123	PF14559	Tetratricopeptide repeat
AT01_1125	PF05802	AT01_1125
AT01_1126	PF04888	AT01_1126
AT01_1128	PF03433	EspA-like secreted protein
AT01_113	PF02561	Flagellar protein FliS
AT01_1130	PF08988	Protein of unknown function (DUF1895)
AT01_1131	PF16693	AT01_1131
AT01_1132	PF00263	AT01_1132
AT01_1132	PF03958	Bacterial type II/III secretion system short domain
AT01_1134	PF00072	Response regulator receiver domain
AT01_1134	PF00512	His Kinase A (phospho-acceptor) domain
AT01_1134	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1135	PF00072	Response regulator receiver domain
AT01_1135	PF00196	Bacterial regulatory proteins, luxR family
AT01_1139	PF00267	Gram-negative porin
AT01_114	PF02465	AT01_114
AT01_114	PF07195	AT01_114
AT01_114	PF07196	Flagellin hook IN motif
AT01_1140	PF07690	Major Facilitator Superfamily
AT01_1141	PF01627	Hpt domain
AT01_1141	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1141	PF16359	AT01_1141
AT01_1142	PF00072	Response regulator receiver domain
AT01_1142	PF00196	Bacterial regulatory proteins, luxR family
AT01_1143	PF00072	Response regulator receiver domain
AT01_1143	PF00512	His Kinase A (phospho-acceptor) domain
AT01_1143	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1143	PF09456	RcsC Alpha-Beta-Loop (ABL)
AT01_1144	PF00521	DNA gyrase/topoisomerase IV, subunit A
AT01_1144	PF03989	DNA gyrase C-terminal domain, beta-propeller
AT01_1145	PF13489	Methyltransferase domain
AT01_1146	PF00317	Ribonucleotide reductase, all-alpha domain
AT01_1146	PF02867	Ribonucleotide reductase, barrel domain
AT01_1146	PF03477	ATP cone domain
AT01_1147	PF00268	Ribonucleotide reductase, small chain
AT01_1148	PF00111	2Fe-2S iron-sulfur cluster binding domain
AT01_1149	PF03974	Ecotin
AT01_115	PF00669	Bacterial flagellin N-terminal helical region
AT01_115	PF00700	Bacterial flagellin C-terminal helical region
AT01_1150	PF00082	Subtilase family
AT01_1150	PF01483	Proprotein convertase P-domain
AT01_1154	PF00994	Probable molybdopterin binding domain
AT01_1155	PF03222	Tryptophan/tyrosine permease family
AT01_1156	PF07437	AT01_1156
AT01_1157	PF00199	Catalase
AT01_1157	PF06628	Catalase-related immune-responsive
AT01_1158	PF02610	L-arabinose isomerase
AT01_1159	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_116	PF04539	Sigma-70 region 3
AT01_116	PF04542	Sigma-70 region 2
AT01_116	PF04545	Sigma-70, region 4
AT01_1160	PF07690	Major Facilitator Superfamily
AT01_1161	PF00501	AMP-binding enzyme
AT01_1162	PF13378	Enolase C-terminal domain-like
AT01_1163	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_1164	PF12697	Alpha/beta hydrolase family
AT01_1165	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_1165	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_1165	PF16582	AT01_1165
AT01_1166	PF00425	chorismate binding enzyme
AT01_1167	PF05957	AT01_1167
AT01_1168	PF06496	AT01_1168
AT01_117	PF02899	Phage integrase, N-terminal SAM-like domain
AT01_1171	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_1172	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_1173	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_1173	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AT01_1174	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AT01_1175	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
AT01_1176	PF12838	4Fe-4S dicluster domain
AT01_1177	PF00146	NADH dehydrogenase
AT01_1178	PF00384	Molybdopterin oxidoreductase
AT01_1178	PF01568	Molydopterin dinucleotide binding domain
AT01_1178	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AT01_1178	PF10588	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AT01_1178	PF13510	2Fe-2S iron-sulfur cluster binding domain
AT01_1179	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AT01_1179	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AT01_118	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_1180	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin
AT01_1181	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
AT01_1181	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
AT01_1182	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AT01_1183	PF00507	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
AT01_1184	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1184	PF03466	LysR substrate binding domain
AT01_1185	PF00155	Aminotransferase class I and II
AT01_1187	PF13023	HD domain
AT01_1188	PF02080	TrkA-C domain
AT01_1188	PF03600	Citrate transporter
AT01_1189	PF13419	Haloacid dehalogenase-like hydrolase
AT01_119	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1190	PF03887	YfbU domain
AT01_1191	PF04217	AT01_1191
AT01_1192	PF00871	Acetokinase family
AT01_1193	PF01515	Phosphate acetyl/butaryl transferase
AT01_1193	PF07085	DRTGG domain
AT01_1193	PF13500	AAA domain
AT01_1194	PF00356	Bacterial regulatory proteins, lacI family
AT01_1194	PF13377	Periplasmic binding protein-like domain
AT01_1195	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_1196	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AT01_1197	PF03611	AT01_1197
AT01_1198	PF00293	NUDIX domain
AT01_1199	PF12850	Calcineurin-like phosphoesterase superfamily domain
AT01_12	PF00072	Response regulator receiver domain
AT01_12	PF00196	Bacterial regulatory proteins, luxR family
AT01_120	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1200	PF00563	EAL domain
AT01_1201	PF01370	NAD dependent epimerase/dehydratase family
AT01_1201	PF08338	Domain of unknown function (DUF1731)
AT01_1204	PF00005	ABC transporter
AT01_1205	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1206	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1207	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1208	PF02441	Flavoprotein
AT01_1209	PF00156	Phosphoribosyl transferase domain
AT01_1209	PF13522	Glutamine amidotransferase domain
AT01_121	PF00005	ABC transporter
AT01_1210	PF02674	AT01_1210
AT01_1211	PF05036	Sporulation related domain
AT01_1212	PF02875	Mur ligase family, glutamate ligase domain
AT01_1212	PF08245	Mur ligase middle domain
AT01_1213	PF01039	Carboxyl transferase domain
AT01_1214	PF09335	AT01_1214
AT01_1215	PF01416	tRNA pseudouridine synthase
AT01_1216	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AT01_1216	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AT01_1217	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AT01_1217	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AT01_1217	PF11890	Domain of unknown function (DUF3410)
AT01_1218	PF07883	Cupin domain
AT01_1218	PF12833	Helix-turn-helix domain
AT01_1219	PF00892	EamA-like transporter family
AT01_1220	PF00578	AhpC/TSA family
AT01_1221	PF01323	DSBA-like thioredoxin domain
AT01_1222	PF02683	AT01_1222
AT01_1222	PF11412	Disulphide bond corrector protein DsbC
AT01_1222	PF13899	Thioredoxin-like
AT01_1224	PF03600	Citrate transporter
AT01_1225	PF00328	Histidine phosphatase superfamily (branch 2)
AT01_1226	PF01177	Asp/Glu/Hydantoin racemase
AT01_1227	PF00990	GGDEF domain
AT01_1227	PF08447	PAS fold
AT01_1228	PF00109	Beta-ketoacyl synthase, N-terminal domain
AT01_1228	PF02801	Beta-ketoacyl synthase, C-terminal domain
AT01_1229	PF01266	FAD dependent oxidoreductase
AT01_1229	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AT01_123	PF00171	Aldehyde dehydrogenase family
AT01_123	PF01619	Proline dehydrogenase
AT01_123	PF14850	DNA-binding domain of Proline dehydrogenase
AT01_1230	PF08891	AT01_1230
AT01_1231	PF04315	AT01_1231
AT01_1232	PF01925	AT01_1232
AT01_1233	PF03411	Penicillin-insensitive murein endopeptidase
AT01_1234	PF01264	Chorismate synthase
AT01_1235	PF05175	Methyltransferase small domain
AT01_1236	PF01713	Smr domain
AT01_1237	PF00300	Histidine phosphatase superfamily (branch 1)
AT01_1238	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_1238	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AT01_1238	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AT01_1239	PF00108	Thiolase, N-terminal domain
AT01_1239	PF02803	Thiolase, C-terminal domain
AT01_124	PF00474	Sodium:solute symporter family
AT01_1240	PF04175	Protein of unknown function (DUF406)
AT01_1241	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AT01_1242	PF04333	AT01_1242
AT01_1243	PF14559	Tetratricopeptide repeat
AT01_1244	PF03918	Cytochrome C biogenesis protein
AT01_1245	PF08534	Redoxin
AT01_1246	PF01578	AT01_1246
AT01_1246	PF16327	AT01_1246
AT01_1247	PF03100	CcmE
AT01_1248	PF04995	AT01_1248
AT01_1249	PF01578	AT01_1249
AT01_125	PF03239	AT01_125
AT01_1250	PF03379	AT01_1250
AT01_1251	PF00005	ABC transporter
AT01_1252	PF01226	Formate/nitrite transporter
AT01_1253	PF03831	PhnA protein
AT01_1253	PF08274	PhnA Zinc-Ribbon
AT01_1255	PF00589	Phage integrase family
AT01_1255	PF13356	Domain of unknown function (DUF4102)
AT01_1256	PF01527	Transposase
AT01_1257	PF13276	AT01_1257
AT01_1257	PF13683	AT01_1257
AT01_1258	PF07929	Plasmid pRiA4b ORF-3-like protein
AT01_1259	PF02369	Bacterial Ig-like domain (group 1)
AT01_1259	PF11924	Protein of unknown function (DUF3442)
AT01_126	PF09375	Imelysin
AT01_126	PF13473	Cupredoxin-like domain
AT01_1261	PF13610	AT01_1261
AT01_1264	PF13610	AT01_1264
AT01_1265	PF08808	AT01_1265
AT01_1266	PF02517	CAAX protease self-immunity
AT01_1267	PF00239	Resolvase, N terminal domain
AT01_1267	PF13384	Homeodomain-like domain
AT01_1268	PF03693	Uncharacterised protein family (UPF0156)
AT01_1269	PF05016	Plasmid stabilisation system protein
AT01_127	PF04261	Dyp-type peroxidase family
AT01_1270	PF13614	AAA domain
AT01_1271	PF02195	ParB-like nuclease domain
AT01_1271	PF08775	ParB family
AT01_1272	PF01527	Transposase
AT01_1273	PF13276	AT01_1273
AT01_1273	PF13683	AT01_1273
AT01_1274	PF00419	Fimbrial protein
AT01_1275	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_1275	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_1276	PF00577	Outer membrane usher protein
AT01_1276	PF13953	PapC C-terminal domain
AT01_1276	PF13954	PapC N-terminal domain
AT01_1277	PF00419	Fimbrial protein
AT01_1278	PF00196	Bacterial regulatory proteins, luxR family
AT01_1279	PF00072	Response regulator receiver domain
AT01_1279	PF00196	Bacterial regulatory proteins, luxR family
AT01_128	PF03358	NADPH-dependent FMN reductase
AT01_1280	PF00072	Response regulator receiver domain
AT01_1280	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1280	PF00512	His Kinase A (phospho-acceptor) domain
AT01_1280	PF01627	Hpt domain
AT01_1280	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1282	PF05932	Tir chaperone protein (CesT) family
AT01_1285	PF07969	Amidohydrolase family
AT01_129	PF00324	Amino acid permease
AT01_1298	PF00872	AT01_1298
AT01_1299	PF00589	Phage integrase family
AT01_1300	PF01757	AT01_1300
AT01_1305	PF00872	AT01_1305
AT01_1307	PF01464	Transglycosylase SLT domain
AT01_131	PF00849	RNA pseudouridylate synthase
AT01_131	PF01479	S4 domain
AT01_1317	PF12236	Bacteriophage head to tail connecting protein
AT01_1319	PF03237	Terminase-like family
AT01_132	PF08410	AT01_132
AT01_1324	PF03245	AT01_1324
AT01_1325	PF13539	D-alanyl-D-alanine carboxypeptidase
AT01_1327	PF14359	Domain of unknown function (DUF4406)
AT01_1328	PF03589	Antitermination protein
AT01_1329	PF06322	AT01_1329
AT01_1330	PF05766	AT01_1330
AT01_1334	PF05772	NinB protein
AT01_134	PF08241	Methyltransferase domain
AT01_1340	PF06992	AT01_1340
AT01_1341	PF04492	AT01_1341
AT01_1342	PF03374	AT01_1342
AT01_1342	PF09669	AT01_1342
AT01_1344	PF15943	AT01_1344
AT01_1345	PF01381	Helix-turn-helix
AT01_1356	PF12684	PDDEXK-like domain of unknown function (DUF3799)
AT01_1357	PF03837	AT01_1357
AT01_1358	PF07026	AT01_1358
AT01_136	PF00128	Alpha amylase, catalytic domain
AT01_1360	PF14354	AT01_1360
AT01_1365	PF17399	AT01_1365
AT01_1370	PF00589	Phage integrase family
AT01_1372	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AT01_1372	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AT01_1373	PF13275	S4 domain
AT01_1374	PF01406	tRNA synthetases class I (C) catalytic domain
AT01_1374	PF09190	DALR domain
AT01_1375	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AT01_1376	PF00149	Calcineurin-like phosphoesterase
AT01_1377	PF00731	AIR carboxylase
AT01_1378	PF02222	ATP-grasp domain
AT01_1379	PF02687	AT01_1379
AT01_138	PF10769	AT01_138
AT01_1380	PF00005	ABC transporter
AT01_1381	PF13472	GDSL-like Lipase/Acylhydrolase family
AT01_1382	PF00106	short chain dehydrogenase
AT01_1383	PF00085	Thioredoxin
AT01_1383	PF14559	Tetratricopeptide repeat
AT01_1383	PF14561	Tetratricopeptide repeat
AT01_1384	PF01145	SPFH domain / Band 7 family
AT01_1385	PF01957	NfeD-like C-terminal, partner-binding
AT01_1387	PF05932	Tir chaperone protein (CesT) family
AT01_1388	PF13411	MerR HTH family regulatory protein
AT01_1389	PF00122	E1-E2 ATPase
AT01_1389	PF00403	Heavy-metal-associated domain
AT01_1389	PF00702	haloacid dehalogenase-like hydrolase
AT01_139	PF00072	Response regulator receiver domain
AT01_139	PF00196	Bacterial regulatory proteins, luxR family
AT01_1390	PF01963	AT01_1390
AT01_1391	PF04073	Aminoacyl-tRNA editing domain
AT01_1393	PF08980	Domain of unknown function (DUF1883)
AT01_1394	PF00149	Calcineurin-like phosphoesterase
AT01_1394	PF02872	5'-nucleotidase, C-terminal domain
AT01_1395	PF07690	Major Facilitator Superfamily
AT01_1396	PF00999	Sodium/hydrogen exchanger family
AT01_1396	PF02254	TrkA-N domain
AT01_1397	PF00294	pfkB family carbohydrate kinase
AT01_1398	PF01370	NAD dependent epimerase/dehydratase family
AT01_1399	PF00534	Glycosyl transferases group 1
AT01_1399	PF13439	Glycosyltransferase Family 4
AT01_14	PF00005	ABC transporter
AT01_14	PF08402	TOBE domain
AT01_140	PF01541	GIY-YIG catalytic domain
AT01_140	PF02151	UvrB/uvrC motif
AT01_140	PF08459	UvrC Helix-hairpin-helix N-terminal
AT01_140	PF14520	Helix-hairpin-helix domain
AT01_1400	PF02719	Polysaccharide biosynthesis protein
AT01_1401	PF00953	Glycosyl transferase family 4
AT01_1402	PF00534	Glycosyl transferases group 1
AT01_1402	PF13439	Glycosyltransferase Family 4
AT01_1403	PF00534	Glycosyl transferases group 1
AT01_1403	PF13439	Glycosyltransferase Family 4
AT01_1404	PF00535	Glycosyl transferase family 2
AT01_1405	PF01943	AT01_1405
AT01_1406	PF00762	Ferrochelatase
AT01_1407	PF00406	Adenylate kinase
AT01_1407	PF05191	Adenylate kinase, active site lid
AT01_1408	PF00183	Hsp90 protein
AT01_1408	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1409	PF02132	RecR protein
AT01_1409	PF13662	Toprim domain
AT01_141	PF01066	CDP-alcohol phosphatidyltransferase
AT01_1410	PF02575	YbaB/EbfC DNA-binding family
AT01_1411	PF12168	AT01_1411
AT01_1411	PF12169	DNA polymerase III subunits gamma and tau domain III
AT01_1411	PF12170	DNA polymerase III tau subunit V interacting with alpha
AT01_1411	PF13177	DNA polymerase III, delta subunit
AT01_1412	PF01527	Transposase
AT01_1413	PF13276	AT01_1413
AT01_1414	PF00872	AT01_1414
AT01_1415	PF06092	AT01_1415
AT01_1416	PF11692	AT01_1416
AT01_1419	PF00156	Phosphoribosyl transferase domain
AT01_1420	PF04304	AT01_1420
AT01_1421	PF07445	Primosomal replication protein priB and priC
AT01_1422	PF10689	AT01_1422
AT01_1423	PF00924	Mechanosensitive ion channel
AT01_1423	PF12794	AT01_1423
AT01_1423	PF12795	AT01_1423
AT01_1424	PF02635	DsrE/DsrF-like family
AT01_1425	PF00440	Bacterial regulatory proteins, tetR family
AT01_1425	PF08361	MAATS-type transcriptional repressor, C-terminal region
AT01_1426	PF00529	HlyD family secretion protein
AT01_1426	PF16576	AT01_1426
AT01_1427	PF00873	AcrB/AcrD/AcrF family
AT01_1428	PF01168	Alanine racemase, N-terminal domain
AT01_1429	PF01676	Metalloenzyme superfamily
AT01_1430	PF01197	Ribosomal protein L31
AT01_1431	PF00444	Ribosomal protein L36
AT01_1432	PF01297	Periplasmic solute binding protein family
AT01_1433	PF00950	AT01_1433
AT01_1434	PF00005	ABC transporter
AT01_1436	PF10757	AT01_1436
AT01_1437	PF05321	Haemolysin expression modulating protein
AT01_1438	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AT01_1439	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AT01_1440	PF13622	Thioesterase-like superfamily
AT01_1441	PF00909	Ammonium Transporter Family
AT01_1442	PF00543	Nitrogen regulatory protein P-II
AT01_1443	PF00005	ABC transporter
AT01_1443	PF00664	ABC transporter transmembrane region
AT01_1444	PF00005	ABC transporter
AT01_1444	PF00664	ABC transporter transmembrane region
AT01_1445	PF01037	AsnC family
AT01_1445	PF13412	Winged helix-turn-helix DNA-binding
AT01_1446	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_1447	PF08282	haloacid dehalogenase-like hydrolase
AT01_1448	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_1448	PF12793	AT01_1448
AT01_1449	PF06508	Queuosine biosynthesis protein QueC
AT01_145	PF00589	Phage integrase family
AT01_1450	PF03061	Thioesterase superfamily
AT01_1451	PF12836	Helix-hairpin-helix motif
AT01_1452	PF13145	PPIC-type PPIASE domain
AT01_1452	PF13624	SurA N-terminal domain
AT01_1453	PF00216	Bacterial DNA-binding protein
AT01_1454	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_1454	PF02190	ATP-dependent protease La (LON) domain
AT01_1454	PF05362	Lon protease (S16) C-terminal proteolytic domain
AT01_1455	PF06689	ClpX C4-type zinc finger
AT01_1455	PF07724	AAA domain (Cdc48 subfamily)
AT01_1455	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_1456	PF00574	Clp protease
AT01_1458	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AT01_1458	PF05697	Bacterial trigger factor protein (TF)
AT01_1458	PF05698	Bacterial trigger factor protein (TF) C-terminus
AT01_1459	PF01722	BolA-like protein
AT01_146	PF13986	AT01_146
AT01_1460	PF03923	AT01_1460
AT01_1460	PF08139	AT01_1460
AT01_1461	PF07690	Major Facilitator Superfamily
AT01_1462	PF03502	Nucleoside-specific channel-forming protein, Tsx
AT01_1463	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AT01_1463	PF06481	COX Aromatic Rich Motif
AT01_1464	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AT01_1465	PF00510	Cytochrome c oxidase subunit III
AT01_1466	PF03626	AT01_1466
AT01_1467	PF01040	UbiA prenyltransferase family
AT01_1468	PF07690	Major Facilitator Superfamily
AT01_1469	PF04461	Protein of unknown function (DUF520)
AT01_1470	PF02558	Ketopantoate reductase PanE/ApbA
AT01_1470	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AT01_1471	PF01965	DJ-1/PfpI family
AT01_1472	PF02568	Thiamine biosynthesis protein (ThiI)
AT01_1472	PF02926	THUMP domain
AT01_1473	PF02609	Exonuclease VII small subunit
AT01_1474	PF00348	Polyprenyl synthetase
AT01_1475	PF02779	Transketolase, pyrimidine binding domain
AT01_1475	PF02780	Transketolase, C-terminal domain
AT01_1475	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AT01_1476	PF04608	Phosphatidylglycerophosphatase A
AT01_1477	PF00586	AIR synthase related protein, N-terminal domain
AT01_1477	PF02769	AIR synthase related protein, C-terminal domain
AT01_1478	PF01029	NusB family
AT01_1479	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AT01_1480	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AT01_1480	PF01872	RibD C-terminal domain
AT01_1481	PF03477	ATP cone domain
AT01_1482	PF02355	Protein export membrane protein
AT01_1482	PF07549	SecD/SecF GG Motif
AT01_1483	PF02355	Protein export membrane protein
AT01_1483	PF07549	SecD/SecF GG Motif
AT01_1483	PF13721	SecD export protein N-terminal TM region
AT01_1484	PF02699	Preprotein translocase subunit
AT01_1485	PF01702	Queuine tRNA-ribosyltransferase
AT01_1486	PF02547	Queuosine biosynthesis protein
AT01_1487	PF04336	AT01_1487
AT01_1488	PF00578	AhpC/TSA family
AT01_1488	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AT01_1489	PF01848	AT01_1489
AT01_1490	PF01019	Gamma-glutamyltranspeptidase
AT01_1491	PF00106	short chain dehydrogenase
AT01_1492	PF00128	Alpha amylase, catalytic domain
AT01_1492	PF02903	Alpha amylase, N-terminal ig-like domain
AT01_1493	PF00324	Amino acid permease
AT01_1494	PF05525	AT01_1494
AT01_1495	PF12849	PBP superfamily domain
AT01_1496	PF00512	His Kinase A (phospho-acceptor) domain
AT01_1496	PF00989	PAS fold
AT01_1496	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1496	PF11808	AT01_1496
AT01_1497	PF00072	Response regulator receiver domain
AT01_1497	PF00486	Transcriptional regulatory protein, C terminal
AT01_1498	PF00149	Calcineurin-like phosphoesterase
AT01_1498	PF12320	Type 5 capsule protein repressor C-terminal domain
AT01_1499	PF13476	AAA domain
AT01_1499	PF13558	Putative exonuclease SbcCD, C subunit
AT01_15	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1500	PF00480	ROK family
AT01_1501	PF04381	Putative exonuclease, RdgC
AT01_1502	PF06865	Protein of unknown function (DUF1255)
AT01_1503	PF01202	Shikimate kinase
AT01_1508	PF07338	Protein of unknown function (DUF1471)
AT01_1509	PF08241	Methyltransferase domain
AT01_1510	PF00583	Acetyltransferase (GNAT) family
AT01_1512	PF06165	Glycosyltransferase family 36
AT01_1512	PF10091	Putative glucoamylase
AT01_1512	PF17167	AT01_1512
AT01_1513	PF07238	PilZ domain
AT01_1513	PF07317	Flagellar regulator YcgR
AT01_1514	PF00171	Aldehyde dehydrogenase family
AT01_1515	PF00696	Amino acid kinase family
AT01_1515	PF01472	PUA domain
AT01_1516	PF07417	Transcriptional regulator Crl
AT01_1517	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AT01_1518	PF00156	Phosphoribosyl transferase domain
AT01_1519	PF01546	Peptidase family M20/M25/M40
AT01_1519	PF07687	Peptidase dimerisation domain
AT01_1520	PF00817	impB/mucB/samB family
AT01_1520	PF11798	IMS family HHH motif
AT01_1520	PF11799	impB/mucB/samB family C-terminal domain
AT01_1521	PF01820	D-ala D-ala ligase N-terminus
AT01_1521	PF07478	D-ala D-ala ligase C-terminus
AT01_1522	PF03009	Glycerophosphoryl diester phosphodiesterase family
AT01_1523	PF00872	AT01_1523
AT01_1524	PF04400	AT01_1524
AT01_1525	PF02424	ApbE family
AT01_1526	PF00111	2Fe-2S iron-sulfur cluster binding domain
AT01_1526	PF00175	Oxidoreductase NAD-binding domain
AT01_1526	PF00970	Oxidoreductase FAD-binding domain
AT01_1527	PF02508	AT01_1527
AT01_1528	PF02508	AT01_1528
AT01_1529	PF04205	FMN-binding domain
AT01_1530	PF03116	AT01_1530
AT01_1531	PF05896	AT01_1531
AT01_1531	PF11973	AT01_1531
AT01_1532	PF13230	Glutamine amidotransferases class-II
AT01_1533	PF03734	L,D-transpeptidase catalytic domain
AT01_1534	PF13580	SIS domain
AT01_1535	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AT01_1535	PF02770	Acyl-CoA dehydrogenase, middle domain
AT01_1535	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AT01_1535	PF09317	AT01_1535
AT01_1537	PF05860	haemagglutination activity domain
AT01_1537	PF13018	AT01_1537
AT01_1538	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
AT01_1538	PF08479	POTRA domain, ShlB-type
AT01_154	PF01381	Helix-turn-helix
AT01_1540	PF01636	Phosphotransferase enzyme family
AT01_1541	PF01008	Initiation factor 2 subunit family
AT01_1542	PF03079	ARD/ARD' family
AT01_1544	PF00596	Class II Aldolase and Adducin N-terminal domain
AT01_1545	PF00155	Aminotransferase class I and II
AT01_1546	PF00795	Carbon-nitrogen hydrolase
AT01_1547	PF07690	Major Facilitator Superfamily
AT01_1548	PF03591	AT01_1548
AT01_1549	PF05437	AT01_1549
AT01_1550	PF01047	MarR family
AT01_1551	PF02321	Outer membrane efflux protein
AT01_1552	PF00529	HlyD family secretion protein
AT01_1552	PF16576	AT01_1552
AT01_1553	PF07690	Major Facilitator Superfamily
AT01_1554	PF00588	SpoU rRNA Methylase family
AT01_1554	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AT01_1555	PF00085	Thioredoxin
AT01_1556	PF03942	AT01_1556
AT01_1557	PF00583	Acetyltransferase (GNAT) family
AT01_1557	PF13380	CoA binding domain
AT01_1557	PF13549	ATP-grasp domain
AT01_1557	PF13607	Succinyl-CoA ligase like flavodoxin domain
AT01_1558	PF13091	PLD-like domain
AT01_1559	PF10043	AT01_1559
AT01_1565	PF13242	HAD-hyrolase-like
AT01_1566	PF00005	ABC transporter
AT01_1566	PF09383	NIL domain
AT01_1567	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_1568	PF03180	NLPA lipoprotein
AT01_1569	PF16358	AT01_1569
AT01_1570	PF01980	Uncharacterised protein family UPF0066
AT01_1571	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AT01_1571	PF03129	Anticodon binding domain
AT01_1571	PF04073	Aminoacyl-tRNA editing domain
AT01_1572	PF04170	NlpE N-terminal domain
AT01_1572	PF17185	AT01_1572
AT01_1573	PF00472	RF-1 domain
AT01_1574	PF07152	YaeQ protein
AT01_1575	PF06786	AT01_1575
AT01_1576	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AT01_1577	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AT01_1578	PF01171	PP-loop family
AT01_1578	PF09179	TilS substrate binding domain
AT01_1578	PF11734	TilS substrate C-terminal domain
AT01_1579	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AT01_158	PF06530	AT01_158
AT01_1580	PF01276	Orn/Lys/Arg decarboxylase, major domain
AT01_1580	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AT01_1580	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AT01_1581	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AT01_1582	PF01336	OB-fold nucleic acid binding domain
AT01_1582	PF02811	PHP domain
AT01_1582	PF07733	Bacterial DNA polymerase III alpha subunit
AT01_1582	PF14579	Helix-hairpin-helix motif
AT01_1583	PF01351	Ribonuclease HII
AT01_1584	PF02684	AT01_1584
AT01_1585	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_1585	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AT01_1586	PF07977	FabA-like domain
AT01_1587	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_1587	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AT01_1588	PF03938	Outer membrane protein (OmpH-like)
AT01_1589	PF01103	Surface antigen
AT01_1589	PF07244	Surface antigen variable number repeat
AT01_159	PF00043	Glutathione S-transferase, C-terminal domain
AT01_159	PF02798	Glutathione S-transferase, N-terminal domain
AT01_1590	PF00595	PDZ domain (Also known as DHR or GLGF)
AT01_1590	PF02163	Peptidase family M50
AT01_1591	PF01148	Cytidylyltransferase family
AT01_1592	PF01255	Putative undecaprenyl diphosphate synthase
AT01_1593	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AT01_1593	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AT01_1593	PF13288	DXP reductoisomerase C-terminal domain
AT01_1594	PF01765	Ribosome recycling factor
AT01_1595	PF00696	Amino acid kinase family
AT01_1596	PF00889	Elongation factor TS
AT01_1597	PF00318	Ribosomal protein S2
AT01_1598	PF00557	Metallopeptidase family M24
AT01_1599	PF01842	ACT domain
AT01_1599	PF01909	Nucleotidyltransferase domain
AT01_1599	PF01966	HD domain
AT01_1599	PF08335	GlnD PII-uridylyltransferase
AT01_16	PF13343	Bacterial extracellular solute-binding protein
AT01_1600	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_1600	PF14602	Hexapeptide repeat of succinyl-transferase
AT01_1600	PF14805	Tetrahydrodipicolinate N-succinyltransferase N-terminal
AT01_1601	PF11944	AT01_1601
AT01_1604	PF00005	ABC transporter
AT01_1604	PF00664	ABC transporter transmembrane region
AT01_1604	PF03412	Peptidase C39 family
AT01_1605	PF13650	Aspartyl protease
AT01_1606	PF00258	Flavodoxin
AT01_1607	PF00849	RNA pseudouridylate synthase
AT01_1608	PF04287	tRNA pseudouridine synthase C
AT01_1609	PF07348	Syd protein (SUKH-2)
AT01_161	PF04471	Restriction endonuclease
AT01_1610	PF14489	QueF-like protein
AT01_1610	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AT01_1611	PF03641	Possible lysine decarboxylase
AT01_1611	PF11892	Domain of unknown function (DUF3412)
AT01_1611	PF14793	Domain of unknown function (DUF4478)
AT01_1612	PF01367	5'-3' exonuclease, C-terminal SAM fold
AT01_1612	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AT01_1613	PF01728	FtsJ-like methyltransferase
AT01_1614	PF04241	AT01_1614
AT01_1615	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1615	PF03466	LysR substrate binding domain
AT01_1616	PF06004	Bacterial protein of unknown function (DUF903)
AT01_1617	PF00266	Aminotransferase class-V
AT01_1618	PF02657	Fe-S metabolism associated domain
AT01_1619	PF00899	ThiF family
AT01_1620	PF03562	MltA specific insert domain
AT01_1620	PF06725	3D domain
AT01_1624	PF01520	N-acetylmuramoyl-L-alanine amidase
AT01_1624	PF11741	AMIN domain
AT01_1625	PF00583	Acetyltransferase (GNAT) family
AT01_1625	PF00696	Amino acid kinase family
AT01_1626	PF13538	UvrD-like helicase C-terminal domain
AT01_1626	PF13604	AAA domain
AT01_1627	PF00580	UvrD/REP helicase N-terminal domain
AT01_1627	PF13361	UvrD-like helicase C-terminal domain
AT01_1628	PF00675	Insulinase (Peptidase family M16)
AT01_1628	PF05193	Peptidase M16 inactive domain
AT01_1628	PF16187	AT01_1628
AT01_1629	PF04257	Exodeoxyribonuclease V, gamma subunit
AT01_1630	PF02589	Uncharacterised ACR, YkgG family COG1556
AT01_1631	PF02589	Uncharacterised ACR, YkgG family COG1556
AT01_1631	PF11870	AT01_1631
AT01_1631	PF13183	4Fe-4S dicluster domain
AT01_1632	PF02754	AT01_1632
AT01_1633	PF00171	Aldehyde dehydrogenase family
AT01_1634	PF07470	Glycosyl Hydrolase Family 88
AT01_1635	PF13347	MFS/sugar transport protein
AT01_1636	PF00155	Aminotransferase class I and II
AT01_1637	PF12528	AT01_1637
AT01_1638	PF10713	AT01_1638
AT01_1640	PF07963	Prokaryotic N-terminal methylation motif
AT01_1641	PF00303	Thymidylate synthase
AT01_1642	PF01790	AT01_1642
AT01_1643	PF00391	PEP-utilising enzyme, mobile domain
AT01_1643	PF01590	GAF domain
AT01_1643	PF02896	PEP-utilising enzyme, TIM barrel domain
AT01_1643	PF05524	PEP-utilising enzyme, N-terminal
AT01_1644	PF00293	NUDIX domain
AT01_1645	PF02976	DNA mismatch repair enzyme MutH
AT01_1646	PF03741	AT01_1646
AT01_1647	PF00248	Aldo/keto reductase family
AT01_1648	PF07690	Major Facilitator Superfamily
AT01_1649	PF00501	AMP-binding enzyme
AT01_1649	PF01553	Acyltransferase
AT01_1649	PF13193	AMP-binding enzyme C-terminal domain
AT01_1650	PF00356	Bacterial regulatory proteins, lacI family
AT01_1650	PF13377	Periplasmic binding protein-like domain
AT01_1651	PF00356	Bacterial regulatory proteins, lacI family
AT01_1651	PF13377	Periplasmic binding protein-like domain
AT01_1652	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AT01_1652	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AT01_1653	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1653	PF03466	LysR substrate binding domain
AT01_1654	PF07690	Major Facilitator Superfamily
AT01_1655	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1655	PF03466	LysR substrate binding domain
AT01_1656	PF00753	Metallo-beta-lactamase superfamily
AT01_1659	PF00486	Transcriptional regulatory protein, C terminal
AT01_1660	PF08964	Beta/Gamma crystallin
AT01_1660	PF09101	Exotoxin A binding
AT01_1662	PF05134	Type II secretion system (T2SS), protein L
AT01_1664	PF11612	Type II secretion system (T2SS), protein J
AT01_1665	PF02501	Type II secretion system (T2SS), protein I
AT01_1665	PF07963	Prokaryotic N-terminal methylation motif
AT01_1666	PF07963	Prokaryotic N-terminal methylation motif
AT01_1666	PF08334	Type II secretion system (T2SS), protein G
AT01_1667	PF00482	Type II secretion system (T2SS), protein F
AT01_1668	PF00437	Type II/IV secretion system protein
AT01_1669	PF00263	AT01_1669
AT01_1669	PF03958	Bacterial type II/III secretion system short domain
AT01_1670	PF11356	Type IV pilus biogenesis
AT01_1672	PF00484	Carbonic anhydrase
AT01_1673	PF01638	HxlR-like helix-turn-helix
AT01_1674	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_1675	PF13591	MerR HTH family regulatory protein
AT01_1676	PF00226	DnaJ domain
AT01_1676	PF01556	DnaJ C terminal domain
AT01_1677	PF00356	Bacterial regulatory proteins, lacI family
AT01_1677	PF13377	Periplasmic binding protein-like domain
AT01_1678	PF07690	Major Facilitator Superfamily
AT01_1679	PF01055	Glycosyl hydrolases family 31
AT01_1679	PF13802	Galactose mutarotase-like
AT01_1679	PF17137	AT01_1679
AT01_1680	PF09391	Protein of unknown function (DUF2000)
AT01_1681	PF01037	AsnC family
AT01_1681	PF13412	Winged helix-turn-helix DNA-binding
AT01_1682	PF00990	GGDEF domain
AT01_1686	PF13643	AT01_1686
AT01_1687	PF00589	Phage integrase family
AT01_1689	PF13673	Acetyltransferase (GNAT) domain
AT01_1690	PF00589	Phage integrase family
AT01_1694	PF03864	Phage major capsid protein E
AT01_17	PF07690	Major Facilitator Superfamily
AT01_1701	PF00589	Phage integrase family
AT01_1703	PF00152	tRNA synthetases class II (D, K and N)
AT01_1703	PF01336	OB-fold nucleic acid binding domain
AT01_1704	PF00472	RF-1 domain
AT01_1704	PF03462	PCRF domain
AT01_1705	PF01368	DHH family
AT01_1705	PF02272	DHHA1 domain
AT01_1706	PF10411	Disulfide bond isomerase protein N-terminus
AT01_1706	PF13098	Thioredoxin-like domain
AT01_1707	PF00589	Phage integrase family
AT01_1707	PF02899	Phage integrase, N-terminal SAM-like domain
AT01_1708	PF00258	Flavodoxin
AT01_1709	PF06123	AT01_1709
AT01_1710	PF00512	His Kinase A (phospho-acceptor) domain
AT01_1710	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1710	PF14827	Sensory domain of two-component sensor kinase
AT01_1711	PF00072	Response regulator receiver domain
AT01_1711	PF00486	Transcriptional regulatory protein, C terminal
AT01_1712	PF07254	AT01_1712
AT01_1713	PF03937	Flavinator of succinate dehydrogenase
AT01_1714	PF01571	Aminomethyltransferase folate-binding domain
AT01_1715	PF03006	AT01_1715
AT01_1716	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_1717	PF02347	Glycine cleavage system P-protein
AT01_1718	PF01597	Glycine cleavage H-protein
AT01_1719	PF01571	Aminomethyltransferase folate-binding domain
AT01_1719	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AT01_172	PF06114	Domain of unknown function (DUF955)
AT01_1720	PF01494	FAD binding domain
AT01_1721	PF01494	FAD binding domain
AT01_1722	PF00557	Metallopeptidase family M24
AT01_1722	PF05195	Aminopeptidase P, N-terminal domain
AT01_1723	PF03695	Uncharacterised protein family (UPF0149)
AT01_1724	PF05164	Cell division protein ZapA
AT01_1725	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AT01_1726	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AT01_1726	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AT01_1728	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AT01_1729	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1729	PF03466	LysR substrate binding domain
AT01_173	PF00872	AT01_173
AT01_1730	PF04402	Protein of unknown function (DUF541)
AT01_1731	PF01810	AT01_1731
AT01_1733	PF00924	Mechanosensitive ion channel
AT01_1733	PF05552	Conserved TM helix
AT01_1734	PF01116	Fructose-bisphosphate aldolase class-II
AT01_1735	PF00162	Phosphoglycerate kinase
AT01_1736	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AT01_1736	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AT01_1737	PF00456	Transketolase, thiamine diphosphate binding domain
AT01_1737	PF02779	Transketolase, pyrimidine binding domain
AT01_1737	PF02780	Transketolase, C-terminal domain
AT01_1738	PF01435	Peptidase family M48
AT01_1739	PF00355	Rieske [2Fe-2S] domain
AT01_174	PF14367	AT01_174
AT01_1740	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AT01_1741	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AT01_1741	PF02772	S-adenosylmethionine synthetase, central domain
AT01_1741	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AT01_1742	PF04143	AT01_1742
AT01_1744	PF01022	Bacterial regulatory protein, arsR family
AT01_1745	PF10263	AT01_1745
AT01_1745	PF17283	AT01_1745
AT01_1746	PF04231	Endonuclease I
AT01_1747	PF04452	RNA methyltransferase
AT01_1748	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AT01_1748	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AT01_1749	PF02622	Uncharacterized ACR, COG1678
AT01_175	PF07804	HipA-like C-terminal domain
AT01_175	PF13657	HipA N-terminal domain
AT01_1750	PF03652	Uncharacterised protein family (UPF0081)
AT01_1751	PF00795	Carbon-nitrogen hydrolase
AT01_1752	PF04371	Porphyromonas-type peptidyl-arginine deiminase
AT01_1753	PF00437	Type II/IV secretion system protein
AT01_1754	PF01168	Alanine racemase, N-terminal domain
AT01_1755	PF03807	NADP oxidoreductase coenzyme F420-dependent
AT01_1755	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AT01_1756	PF02325	AT01_1756
AT01_1757	PF02594	Uncharacterised ACR, YggU family COG1872
AT01_1758	PF01725	Ham1 family
AT01_1759	PF04055	Radical SAM superfamily
AT01_1759	PF06969	HemN C-terminal domain
AT01_176	PF13560	Helix-turn-helix domain
AT01_1760	PF11101	AT01_1760
AT01_1761	PF04960	Glutaminase
AT01_1762	PF04320	AT01_1762
AT01_1763	PF02390	Putative methyltransferase
AT01_1764	PF00633	Helix-hairpin-helix motif
AT01_1764	PF00730	HhH-GPD superfamily base excision DNA repair protein
AT01_1764	PF10576	Iron-sulfur binding domain of endonuclease III
AT01_1764	PF14815	NUDIX domain
AT01_1765	PF04362	Bacterial Fe(2+) trafficking
AT01_1766	PF01464	Transglycosylase SLT domain
AT01_1766	PF11873	Domain of unknown function (DUF3393)
AT01_1768	PF00589	Phage integrase family
AT01_1768	PF13356	Domain of unknown function (DUF4102)
AT01_1768	PF14659	Phage integrase, N-terminal SAM-like domain
AT01_1769	PF06048	AT01_1769
AT01_1770	PF00589	Phage integrase family
AT01_1770	PF14659	Phage integrase, N-terminal SAM-like domain
AT01_1774	PF10980	Protein of unknown function (DUF2787)
AT01_1775	PF04970	Lecithin retinol acyltransferase
AT01_1776	PF08220	DeoR-like helix-turn-helix domain
AT01_1777	PF02893	GRAM domain
AT01_1780	PF13280	AT01_1780
AT01_1781	PF08220	DeoR-like helix-turn-helix domain
AT01_1781	PF13280	AT01_1781
AT01_1784	PF00072	Response regulator receiver domain
AT01_1785	PF06259	Alpha/beta hydrolase
AT01_1788	PF12532	AT01_1788
AT01_1789	PF00589	Phage integrase family
AT01_1789	PF13102	Phage integrase SAM-like domain
AT01_179	PF07484	Phage Tail Collar Domain
AT01_179	PF12571	AT01_179
AT01_1790	PF07515	Protein of unknown function (DUF1528)
AT01_1791	PF13610	AT01_1791
AT01_1793	PF00753	Metallo-beta-lactamase superfamily
AT01_1793	PF14863	Alkyl sulfatase dimerisation
AT01_1793	PF14864	Alkyl sulfatase C-terminal
AT01_1794	PF13610	AT01_1794
AT01_1795	PF01476	LysM domain
AT01_1795	PF09134	Invasin, domain 3
AT01_1795	PF11924	Protein of unknown function (DUF3442)
AT01_1798	PF00872	AT01_1798
AT01_18	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_18	PF05231	AT01_18
AT01_18	PF07730	Histidine kinase
AT01_180	PF09684	AT01_180
AT01_1800	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
AT01_1802	PF07929	Plasmid pRiA4b ORF-3-like protein
AT01_1803	PF14263	Domain of unknown function (DUF4354)
AT01_1804	PF03797	Autotransporter beta-domain
AT01_1805	PF13610	AT01_1805
AT01_1806	PF04183	IucA / IucC family
AT01_1806	PF06276	Ferric iron reductase FhuF-like transporter
AT01_1807	PF00593	TonB dependent receptor
AT01_1807	PF07715	TonB-dependent Receptor Plug Domain
AT01_1808	PF01497	Periplasmic binding protein
AT01_1809	PF01032	FecCD transport family
AT01_181	PF04865	AT01_181
AT01_1810	PF01032	FecCD transport family
AT01_1811	PF00005	ABC transporter
AT01_1812	PF04183	IucA / IucC family
AT01_1812	PF06276	Ferric iron reductase FhuF-like transporter
AT01_1813	PF13523	Acetyltransferase (GNAT) domain
AT01_1814	PF13434	L-lysine 6-monooxygenase (NADPH-requiring)
AT01_1815	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AT01_1816	PF06276	Ferric iron reductase FhuF-like transporter
AT01_1816	PF11575	AT01_1816
AT01_1817	PF13610	AT01_1817
AT01_1818	PF01527	Transposase
AT01_1819	PF01850	PIN domain
AT01_182	PF04965	Gene 25-like lysozyme
AT01_1820	PF04014	Antidote-toxin recognition MazE
AT01_1823	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AT01_1824	PF01724	Domain of unknown function DUF29
AT01_1825	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1825	PF03466	LysR substrate binding domain
AT01_1826	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_1826	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_1826	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_1827	PF00550	Phosphopantetheine attachment site
AT01_183	PF05973	AT01_183
AT01_1830	PF06511	Invasion plasmid antigen IpaD
AT01_1832	PF04888	AT01_1832
AT01_1833	PF07720	Tetratricopeptide repeat
AT01_1834	PF01312	FlhB HrpN YscU SpaS Family
AT01_1835	PF01311	AT01_1835
AT01_1836	PF01313	AT01_1836
AT01_1837	PF00813	AT01_1837
AT01_1838	PF01052	Surface presentation of antigens (SPOA)
AT01_184	PF01381	Helix-turn-helix
AT01_1842	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_1843	PF03519	Invasion protein B family
AT01_1844	PF00771	FHIPEP family
AT01_1845	PF07201	HrpJ-like domain
AT01_1846	PF00263	AT01_1846
AT01_1846	PF03958	Bacterial type II/III secretion system short domain
AT01_1847	PF12833	Helix-turn-helix domain
AT01_1848	PF09480	Type III secretion system protein PrgH-EprH (PrgH)
AT01_1849	PF09392	Type III secretion needle MxiH like
AT01_185	PF04717	Phage-related baseplate assembly protein
AT01_1850	PF09392	Type III secretion needle MxiH like
AT01_1851	PF01514	Secretory protein of YscJ/FliF family
AT01_1852	PF09482	AT01_1852
AT01_1855	PF01464	Transglycosylase SLT domain
AT01_1858	PF00072	Response regulator receiver domain
AT01_1858	PF00196	Bacterial regulatory proteins, luxR family
AT01_1859	PF00072	Response regulator receiver domain
AT01_1859	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_1859	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_186	PF05069	AT01_186
AT01_1860	PF00620	RhoGAP domain
AT01_1862	PF03527	AT01_1862
AT01_1862	PF12639	DNase/tRNase domain of colicin-like bacteriocin
AT01_1864	PF03527	AT01_1864
AT01_1864	PF05488	PAAR motif
AT01_1864	PF05593	AT01_1864
AT01_1865	PF08786	Domain of unknown function (DUF1795)
AT01_1866	PF05954	Phage late control gene D protein (GPD)
AT01_1867	PF06812	AT01_1867
AT01_1867	PF12486	AT01_1867
AT01_1868	PF06744	AT01_1868
AT01_1868	PF06761	AT01_1868
AT01_1868	PF14331	AT01_1868
AT01_1869	PF06812	AT01_1869
AT01_1869	PF16989	AT01_1869
AT01_1870	PF11319	AT01_1870
AT01_1872	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_1872	PF07724	AAA domain (Cdc48 subfamily)
AT01_1872	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_1873	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AT01_1874	PF05936	AT01_1874
AT01_1875	PF12790	Type VI secretion lipoprotein
AT01_1877	PF06996	AT01_1877
AT01_1878	PF05947	AT01_1878
AT01_1879	PF04965	Gene 25-like lysozyme
AT01_188	PF06891	AT01_188
AT01_1880	PF05943	AT01_1880
AT01_1881	PF05591	AT01_1881
AT01_1882	PF05638	Protein of unknown function (DUF796)
AT01_1883	PF00005	ABC transporter
AT01_1884	PF07885	Ion channel
AT01_1885	PF00083	Sugar (and other) transporter
AT01_1886	PF00356	Bacterial regulatory proteins, lacI family
AT01_1886	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_1887	PF01156	Inosine-uridine preferring nucleoside hydrolase
AT01_1888	PF01895	PhoU domain
AT01_1888	PF02690	AT01_1888
AT01_1889	PF13018	AT01_1889
AT01_1891	PF00083	Sugar (and other) transporter
AT01_1891	PF08946	Osmosensory transporter coiled coil
AT01_1892	PF00563	EAL domain
AT01_1892	PF00989	PAS fold
AT01_1892	PF00990	GGDEF domain
AT01_1892	PF05228	AT01_1892
AT01_1893	PF11769	AT01_1893
AT01_1894	PF02110	Hydroxyethylthiazole kinase family
AT01_1895	PF00708	Acylphosphatase
AT01_1895	PF01300	Telomere recombination
AT01_1895	PF07503	HypF finger
AT01_1896	PF00586	AIR synthase related protein, N-terminal domain
AT01_1896	PF02769	AIR synthase related protein, C-terminal domain
AT01_1897	PF01924	Hydrogenase formation hypA family
AT01_1898	PF01455	HupF/HypC family
AT01_1899	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AT01_19	PF00072	Response regulator receiver domain
AT01_19	PF00196	Bacterial regulatory proteins, luxR family
AT01_190	PF00959	Phage lysozyme
AT01_1900	PF01155	Hydrogenase expression/synthesis hypA family
AT01_1901	PF11939	Protein of unknown function (DUF3457)
AT01_1902	PF01750	Hydrogenase maturation protease
AT01_1903	PF00374	Nickel-dependent hydrogenase
AT01_1905	PF13247	4Fe-4S dicluster domain
AT01_1906	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AT01_1906	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal
AT01_1907	PF03748	AT01_1907
AT01_1908	PF00486	Transcriptional regulatory protein, C terminal
AT01_1909	PF00657	GDSL-like Lipase/Acylhydrolase
AT01_1913	PF01497	Periplasmic binding protein
AT01_1914	PF01032	FecCD transport family
AT01_1915	PF01032	FecCD transport family
AT01_1916	PF00005	ABC transporter
AT01_1917	PF00756	Putative esterase
AT01_1917	PF11806	Domain of unknown function (DUF3327)
AT01_1918	PF00593	TonB dependent receptor
AT01_1918	PF07715	TonB-dependent Receptor Plug Domain
AT01_192	PF05489	Phage Tail Protein X
AT01_1921	PF01478	Type IV leader peptidase family
AT01_1923	PF00263	AT01_1923
AT01_1923	PF13629	AT01_1923
AT01_1926	PF00437	Type II/IV secretion system protein
AT01_1927	PF00482	Type II secretion system (T2SS), protein F
AT01_1928	PF00482	Type II secretion system (T2SS), protein F
AT01_193	PF05926	AT01_193
AT01_1930	PF07811	AT01_1930
AT01_1931	PF16964	AT01_1931
AT01_1933	PF02472	Biopolymer transport protein ExbD/TolR
AT01_1934	PF01618	AT01_1934
AT01_1935	PF01053	Cys/Met metabolism PLP-dependent enzyme
AT01_1936	PF09335	AT01_1936
AT01_1937	PF06719	AT01_1937
AT01_1937	PF12833	Helix-turn-helix domain
AT01_1939	PF00465	Iron-containing alcohol dehydrogenase
AT01_194	PF05944	AT01_194
AT01_1940	PF00248	Aldo/keto reductase family
AT01_1941	PF04055	Radical SAM superfamily
AT01_1941	PF08497	AT01_1941
AT01_1941	PF11842	AT01_1941
AT01_1943	PF00394	Multicopper oxidase
AT01_1943	PF07731	Multicopper oxidase
AT01_1943	PF07732	Multicopper oxidase
AT01_1944	PF01553	Acyltransferase
AT01_1945	PF00521	DNA gyrase/topoisomerase IV, subunit A
AT01_1945	PF03989	DNA gyrase C-terminal domain, beta-propeller
AT01_1946	PF02525	Flavodoxin-like fold
AT01_1947	PF03992	Antibiotic biosynthesis monooxygenase
AT01_1948	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1948	PF03466	LysR substrate binding domain
AT01_1949	PF00204	DNA gyrase B
AT01_1949	PF00986	DNA gyrase B subunit, carboxyl terminus
AT01_1949	PF01751	Toprim domain
AT01_1949	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_1950	PF05728	Uncharacterised protein family (UPF0227)
AT01_1951	PF00149	Calcineurin-like phosphoesterase
AT01_1952	PF06853	AT01_1952
AT01_1953	PF00293	NUDIX domain
AT01_1954	PF02321	Outer membrane efflux protein
AT01_1955	PF06693	AT01_1955
AT01_1956	PF03738	Glutathionylspermidine synthase preATP-grasp
AT01_1957	PF02900	Catalytic LigB subunit of aromatic ring-opening dioxygenase
AT01_1958	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AT01_1959	PF04380	AT01_1959
AT01_1960	PF00294	pfkB family carbohydrate kinase
AT01_1960	PF01467	Cytidylyltransferase
AT01_1961	PF03710	Glutamate-ammonia ligase adenylyltransferase
AT01_1961	PF08335	GlnD PII-uridylyltransferase
AT01_1962	PF01928	CYTH domain
AT01_1963	PF08239	Bacterial SH3 domain
AT01_1964	PF01743	Poly A polymerase head domain
AT01_1964	PF01966	HD domain
AT01_1964	PF12627	Probable RNA and SrmB- binding site of polymerase A
AT01_1965	PF02673	AT01_1965
AT01_1966	PF02152	Dihydroneopterin aldolase
AT01_1967	PF02660	AT01_1967
AT01_1968	PF00814	Glycoprotease family
AT01_1969	PF01165	Ribosomal protein S21
AT01_1970	PF01807	CHC2 zinc finger
AT01_1970	PF08275	DNA primase catalytic core, N-terminal domain
AT01_1970	PF08278	DNA primase DnaG DnaB-binding
AT01_1970	PF10410	DnaB-helicase binding domain of primase
AT01_1970	PF13155	Toprim-like
AT01_1971	PF00140	Sigma-70 factor, region 1
AT01_1971	PF03979	Sigma-70 factor, region 1
AT01_1971	PF04539	Sigma-70 region 3
AT01_1971	PF04542	Sigma-70 region 2
AT01_1971	PF04545	Sigma-70, region 4
AT01_1971	PF04546	Sigma-70, non-essential region
AT01_1975	PF03887	YfbU domain
AT01_1976	PF03729	AT01_1976
AT01_1977	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AT01_1977	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_1978	PF05175	Methyltransferase small domain
AT01_1979	PF03797	Autotransporter beta-domain
AT01_1980	PF01863	Protein of unknown function DUF45
AT01_1981	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AT01_1982	PF03741	AT01_1982
AT01_1983	PF00375	Sodium:dicarboxylate symporter family
AT01_1984	PF10688	AT01_1984
AT01_1985	PF04295	AT01_1985
AT01_1985	PF08666	SAF domain
AT01_1986	PF01232	Mannitol dehydrogenase Rossmann domain
AT01_1986	PF08125	Mannitol dehydrogenase C-terminal domain
AT01_1987	PF02614	Glucuronate isomerase
AT01_1988	PF07690	Major Facilitator Superfamily
AT01_1989	PF00392	Bacterial regulatory proteins, gntR family
AT01_1989	PF07729	FCD domain
AT01_1991	PF09335	AT01_1991
AT01_1992	PF13721	SecD export protein N-terminal TM region
AT01_1993	PF06476	AT01_1993
AT01_1994	PF05957	AT01_1994
AT01_1995	PF07332	AT01_1995
AT01_1996	PF13997	AT01_1996
AT01_1997	PF07681	AT01_1997
AT01_1998	PF13409	Glutathione S-transferase, N-terminal domain
AT01_1998	PF13410	Glutathione S-transferase, C-terminal domain
AT01_1999	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_1999	PF03466	LysR substrate binding domain
AT01_2	PF05638	Protein of unknown function (DUF796)
AT01_20	PF00072	Response regulator receiver domain
AT01_20	PF12431	AT01_20
AT01_2000	PF02678	Pirin
AT01_2001	PF00248	Aldo/keto reductase family
AT01_2002	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2002	PF03466	LysR substrate binding domain
AT01_2003	PF05638	Protein of unknown function (DUF796)
AT01_2006	PF01381	Helix-turn-helix
AT01_2008	PF00145	C-5 cytosine-specific DNA methylase
AT01_2009	PF00872	AT01_2009
AT01_201	PF13417	Glutathione S-transferase, N-terminal domain
AT01_201	PF14834	Glutathione S-transferase, C-terminal domain
AT01_2010	PF00589	Phage integrase family
AT01_2010	PF11646	Protein of unknown function DUF3258
AT01_2011	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_2012	PF04348	LppC putative lipoprotein
AT01_2013	PF02021	Uncharacterised protein family UPF0102
AT01_2014	PF13580	SIS domain
AT01_2015	PF04972	BON domain
AT01_2016	PF00912	Transglycosylase
AT01_2018	PF00072	Response regulator receiver domain
AT01_2018	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2018	PF00989	PAS fold
AT01_2018	PF01627	Hpt domain
AT01_2018	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2019	PF04055	Radical SAM superfamily
AT01_2019	PF16199	AT01_2019
AT01_202	PF13302	Acetyltransferase (GNAT) domain
AT01_2020	PF00310	Glutamine amidotransferases class-II
AT01_2020	PF01493	GXGXG motif
AT01_2020	PF01645	Conserved region in glutamate synthase
AT01_2020	PF04898	Glutamate synthase central domain
AT01_2021	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_2021	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AT01_2023	PF04386	Stringent starvation protein B
AT01_2024	PF00043	Glutathione S-transferase, C-terminal domain
AT01_2024	PF02798	Glutathione S-transferase, N-terminal domain
AT01_2025	PF00380	Ribosomal protein S9/S16
AT01_2026	PF00572	Ribosomal protein L13
AT01_2027	PF03969	AFG1-like ATPase
AT01_2028	PF06295	AT01_2028
AT01_2029	PF00595	PDZ domain (Also known as DHR or GLGF)
AT01_2029	PF13180	PDZ domain
AT01_2029	PF13365	Trypsin-like peptidase domain
AT01_203	PF01734	Patatin-like phospholipase
AT01_2030	PF13180	PDZ domain
AT01_2030	PF13365	Trypsin-like peptidase domain
AT01_2031	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AT01_2032	PF01722	BolA-like protein
AT01_2033	PF13466	STAS domain
AT01_2034	PF05494	Toluene tolerance, Ttg2
AT01_2035	PF02470	AT01_2035
AT01_2036	PF02405	AT01_2036
AT01_2037	PF00005	ABC transporter
AT01_2038	PF01699	Sodium/calcium exchanger protein
AT01_2039	PF00571	CBS domain
AT01_2039	PF01380	SIS domain
AT01_2040	PF08282	haloacid dehalogenase-like hydrolase
AT01_2041	PF06835	Lipopolysaccharide-assembly, LptC-related
AT01_2042	PF03968	OstA-like protein
AT01_2043	PF00005	ABC transporter
AT01_2043	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AT01_2044	PF00309	AT01_2044
AT01_2044	PF04552	Sigma-54, DNA binding domain
AT01_2044	PF04963	Sigma-54 factor, core binding domain
AT01_2045	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AT01_2046	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_2047	PF03668	AT01_2047
AT01_2048	PF00381	PTS HPr component phosphorylation site
AT01_2050	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AT01_2050	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AT01_2051	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AT01_2051	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AT01_2052	PF01042	Endoribonuclease L-PSP
AT01_2053	PF00128	Alpha amylase, catalytic domain
AT01_2053	PF11941	Domain of unknown function (DUF3459)
AT01_2054	PF00367	phosphotransferase system, EIIB
AT01_2054	PF02378	Phosphotransferase system, EIIC
AT01_2055	PF00356	Bacterial regulatory proteins, lacI family
AT01_2055	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_2056	PF00122	E1-E2 ATPase
AT01_2056	PF00690	Cation transporter/ATPase, N-terminus
AT01_2056	PF00702	haloacid dehalogenase-like hydrolase
AT01_2057	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_2057	PF00874	PRD domain
AT01_2057	PF05043	Mga helix-turn-helix domain
AT01_2057	PF08279	HTH domain
AT01_2060	PF07071	Protein of unknown function (DUF1341)
AT01_2061	PF03841	L-seryl-tRNA selenium transferase
AT01_2062	PF01979	Amidohydrolase family
AT01_2063	PF14187	AT01_2063
AT01_2064	PF14188	AT01_2064
AT01_2065	PF14189	AT01_2065
AT01_2066	PF14272	AT01_2066
AT01_2067	PF00874	PRD domain
AT01_2068	PF01272	Transcription elongation factor, GreA/GreB, C-term
AT01_2068	PF14760	Rnk N-terminus
AT01_2069	PF07361	Cytochrome b562
AT01_207	PF04266	ASCH domain
AT01_2070	PF01523	Putative modulator of DNA gyrase
AT01_2071	PF04751	Protein of unknown function (DUF615)
AT01_2072	PF01337	Barstar (barnase inhibitor)
AT01_2073	PF00545	ribonuclease
AT01_2074	PF00171	Aldehyde dehydrogenase family
AT01_2075	PF04632	AT01_2075
AT01_2076	PF13437	HlyD family secretion protein
AT01_2076	PF13533	Biotin-lipoyl like
AT01_2077	PF07869	AT01_2077
AT01_2078	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2078	PF03466	LysR substrate binding domain
AT01_2079	PF01523	Putative modulator of DNA gyrase
AT01_208	PF07351	AT01_208
AT01_2080	PF00795	Carbon-nitrogen hydrolase
AT01_2081	PF13116	AT01_2081
AT01_2081	PF13502	AT01_2081
AT01_2082	PF00575	S1 RNA binding domain
AT01_2082	PF10150	Ribonuclease E/G family
AT01_2083	PF02545	Maf-like protein
AT01_2084	PF04093	AT01_2084
AT01_2085	PF04085	rod shape-determining protein MreC
AT01_2086	PF06723	MreB/Mbl protein
AT01_2087	PF00563	EAL domain
AT01_2087	PF00990	GGDEF domain
AT01_2087	PF17157	AT01_2087
AT01_2089	PF00107	Zinc-binding dehydrogenase
AT01_2089	PF08240	Alcohol dehydrogenase GroES-like domain
AT01_209	PF00990	GGDEF domain
AT01_209	PF08447	PAS fold
AT01_209	PF08448	PAS fold
AT01_209	PF13426	PAS domain
AT01_2090	PF00174	Oxidoreductase molybdopterin binding domain
AT01_2091	PF01794	AT01_2091
AT01_2092	PF01220	Dehydroquinase class II
AT01_2093	PF00364	Biotin-requiring enzyme
AT01_2094	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AT01_2094	PF02785	Biotin carboxylase C-terminal domain
AT01_2094	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AT01_2095	PF06196	AT01_2095
AT01_2096	PF00474	Sodium:solute symporter family
AT01_2097	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AT01_2098	PF01207	Dihydrouridine synthase (Dus)
AT01_2099	PF02954	Bacterial regulatory protein, Fis family
AT01_21	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_21	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AT01_21	PF17203	AT01_21
AT01_210	PF02470	AT01_210
AT01_2100	PF00990	GGDEF domain
AT01_2100	PF02743	Cache domain
AT01_2101	PF05433	AT01_2101
AT01_2102	PF00313	'Cold-shock' DNA-binding domain
AT01_2103	PF00313	'Cold-shock' DNA-binding domain
AT01_2104	PF01380	SIS domain
AT01_2105	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_2105	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_2106	PF02653	AT01_2106
AT01_2107	PF02653	AT01_2107
AT01_2108	PF00005	ABC transporter
AT01_2109	PF13407	Periplasmic binding protein domain
AT01_211	PF04403	AT01_211
AT01_2110	PF03279	AT01_2110
AT01_2111	PF10142	PhoPQ-activated pathogenicity-related protein
AT01_2112	PF04172	AT01_2112
AT01_2113	PF03788	AT01_2113
AT01_2114	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2114	PF03466	LysR substrate binding domain
AT01_2115	PF00999	Sodium/hydrogen exchanger family
AT01_2116	PF00860	Permease family
AT01_2117	PF00043	Glutathione S-transferase, C-terminal domain
AT01_2117	PF02798	Glutathione S-transferase, N-terminal domain
AT01_2118	PF01381	Helix-turn-helix
AT01_2119	PF07804	HipA-like C-terminal domain
AT01_2119	PF13657	HipA N-terminal domain
AT01_212	PF13185	GAF domain
AT01_2120	PF00436	Single-strand binding protein family
AT01_2122	PF04237	YjbR
AT01_2123	PF00155	Aminotransferase class I and II
AT01_2124	PF00842	Alanine racemase, C-terminal domain
AT01_2124	PF01168	Alanine racemase, N-terminal domain
AT01_2125	PF00772	DnaB-like helicase N terminal domain
AT01_2125	PF03796	DnaB-like helicase C terminal domain
AT01_2126	PF00107	Zinc-binding dehydrogenase
AT01_2126	PF08240	Alcohol dehydrogenase GroES-like domain
AT01_2128	PF09583	AT01_2128
AT01_2129	PF01207	Dihydrouridine synthase (Dus)
AT01_213	PF04352	ProQ/FINO family
AT01_213	PF17516	AT01_213
AT01_2132	PF01475	Ferric uptake regulator family
AT01_2133	PF00717	Peptidase S24-like
AT01_2133	PF01726	LexA DNA binding domain
AT01_2134	PF01219	Prokaryotic diacylglycerol kinase
AT01_2135	PF01553	Acyltransferase
AT01_2136	PF01040	UbiA prenyltransferase family
AT01_2137	PF04345	Chorismate lyase
AT01_2138	PF07148	AT01_2138
AT01_2139	PF02264	LamB porin
AT01_214	PF00595	PDZ domain (Also known as DHR or GLGF)
AT01_214	PF03572	Peptidase family S41
AT01_214	PF11818	AT01_214
AT01_2140	PF00005	ABC transporter
AT01_2140	PF08402	TOBE domain
AT01_2141	PF13416	Bacterial extracellular solute-binding protein
AT01_2142	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2142	PF14785	Maltose transport system permease protein MalF P2 domain
AT01_2143	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2144	PF06146	AT01_2144
AT01_2145	PF00342	Phosphoglucose isomerase
AT01_2147	PF00696	Amino acid kinase family
AT01_2148	PF01758	Sodium Bile acid symporter family
AT01_2149	PF00809	Pterin binding enzyme
AT01_2149	PF02310	B12 binding domain
AT01_2149	PF02574	Homocysteine S-methyltransferase
AT01_2149	PF02607	B12 binding domain
AT01_2149	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AT01_215	PF01435	Peptidase family M48
AT01_2150	PF01614	Bacterial transcriptional regulator
AT01_2150	PF09339	IclR helix-turn-helix domain
AT01_2151	PF06315	Isocitrate dehydrogenase kinase/phosphatase (AceK)
AT01_2152	PF00463	Isocitrate lyase family
AT01_2153	PF01274	Malate synthase
AT01_2154	PF04204	Homoserine O-succinyltransferase
AT01_216	PF07690	Major Facilitator Superfamily
AT01_2162	PF01808	AICARFT/IMPCHase bienzyme
AT01_2162	PF02142	MGS-like domain
AT01_2163	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AT01_2163	PF02843	Phosphoribosylglycinamide synthetase, C domain
AT01_2163	PF02844	Phosphoribosylglycinamide synthetase, N domain
AT01_2164	PF07356	AT01_2164
AT01_2165	PF00216	Bacterial DNA-binding protein
AT01_2166	PF04222	Protein of unknown function (DUF416)
AT01_2167	PF04493	Endonuclease V
AT01_2168	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AT01_2169	PF00293	NUDIX domain
AT01_2169	PF09297	NADH pyrophosphatase zinc ribbon domain
AT01_217	PF14583	Oligogalacturonate lyase
AT01_2170	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AT01_2171	PF01964	ThiC family
AT01_2171	PF13667	ThiC-associated domain
AT01_2172	PF02581	Thiamine monophosphate synthase/TENI
AT01_2173	PF00899	ThiF family
AT01_2174	PF02597	ThiS family
AT01_2175	PF05690	Thiazole biosynthesis protein ThiG
AT01_2176	PF04055	Radical SAM superfamily
AT01_2176	PF06968	Biotin and Thiamin Synthesis associated domain
AT01_2177	PF00623	RNA polymerase Rpb1, domain 2
AT01_2177	PF04983	RNA polymerase Rpb1, domain 3
AT01_2177	PF04997	RNA polymerase Rpb1, domain 1
AT01_2177	PF04998	RNA polymerase Rpb1, domain 5
AT01_2177	PF05000	RNA polymerase Rpb1, domain 4
AT01_2178	PF00562	RNA polymerase Rpb2, domain 6
AT01_2178	PF04560	RNA polymerase Rpb2, domain 7
AT01_2178	PF04561	RNA polymerase Rpb2, domain 2
AT01_2178	PF04563	RNA polymerase beta subunit
AT01_2178	PF04565	RNA polymerase Rpb2, domain 3
AT01_2178	PF10385	RNA polymerase beta subunit external 1 domain
AT01_2179	PF00542	Ribosomal protein L7/L12 C-terminal domain
AT01_2179	PF16320	AT01_2179
AT01_218	PF01614	Bacterial transcriptional regulator
AT01_218	PF09339	IclR helix-turn-helix domain
AT01_2180	PF00466	Ribosomal protein L10
AT01_2181	PF00687	Ribosomal protein L1p/L10e family
AT01_2182	PF00298	Ribosomal protein L11, RNA binding domain
AT01_2182	PF03946	Ribosomal protein L11, N-terminal domain
AT01_2183	PF00467	KOW motif
AT01_2183	PF02357	Transcription termination factor nusG
AT01_2184	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AT01_2185	PF00009	Elongation factor Tu GTP binding domain
AT01_2185	PF03143	Elongation factor Tu C-terminal domain
AT01_2185	PF03144	Elongation factor Tu domain 2
AT01_219	PF01471	Putative peptidoglycan binding domain
AT01_219	PF01510	N-acetylmuramoyl-L-alanine amidase
AT01_2190	PF13673	Acetyltransferase (GNAT) domain
AT01_2191	PF00485	Phosphoribulokinase / Uridine kinase family
AT01_2192	PF02237	Biotin protein ligase C terminal domain
AT01_2192	PF03099	Biotin/lipoate A/B protein ligase family
AT01_2192	PF08279	HTH domain
AT01_2193	PF01565	FAD binding domain
AT01_2193	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AT01_2198	PF12724	Flavodoxin domain
AT01_2199	PF02386	Cation transport protein
AT01_22	PF08218	Citrate lyase ligase C-terminal domain
AT01_220	PF00375	Sodium:dicarboxylate symporter family
AT01_2200	PF01205	Uncharacterized protein family UPF0029
AT01_2200	PF09186	Domain of unknown function (DUF1949)
AT01_2201	PF00557	Metallopeptidase family M24
AT01_2202	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_2202	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AT01_2202	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AT01_2203	PF00108	Thiolase, N-terminal domain
AT01_2203	PF02803	Thiolase, C-terminal domain
AT01_2204	PF00175	Oxidoreductase NAD-binding domain
AT01_2204	PF00970	Oxidoreductase FAD-binding domain
AT01_2205	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AT01_2206	PF02357	Transcription termination factor nusG
AT01_2207	PF00490	Delta-aminolevulinic acid dehydratase
AT01_2208	PF01026	TatD related DNase
AT01_2209	PF00902	Sec-independent protein translocase protein (TatC)
AT01_221	PF04307	AT01_221
AT01_2211	PF02416	mttA/Hcf106 family
AT01_2212	PF03109	AT01_2212
AT01_2213	PF02036	SCP-2 sterol transfer family
AT01_2214	PF01209	ubiE/COQ5 methyltransferase family
AT01_2215	PF02646	AT01_2215
AT01_2216	PF09335	AT01_2216
AT01_2217	PF02554	AT01_2217
AT01_2217	PF13722	AT01_2217
AT01_2218	PF13350	Tyrosine phosphatase family
AT01_2219	PF01048	Phosphorylase superfamily
AT01_222	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AT01_2220	PF01738	Dienelactone hydrolase family
AT01_2221	PF01717	Cobalamin-independent synthase, Catalytic domain
AT01_2221	PF08267	Cobalamin-independent synthase, N-terminal domain
AT01_2222	PF00892	EamA-like transporter family
AT01_2223	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2223	PF03466	LysR substrate binding domain
AT01_2224	PF03547	AT01_2224
AT01_2225	PF03009	Glycerophosphoryl diester phosphodiesterase family
AT01_2226	PF00005	ABC transporter
AT01_2226	PF08402	TOBE domain
AT01_2227	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2228	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2229	PF13416	Bacterial extracellular solute-binding protein
AT01_223	PF01547	Bacterial extracellular solute-binding protein
AT01_2230	PF04449	CS1 type fimbrial major subunit
AT01_2231	PF16967	AT01_2231
AT01_2232	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_2236	PF00005	ABC transporter
AT01_2237	PF00005	ABC transporter
AT01_2237	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AT01_2238	PF02653	AT01_2238
AT01_2238	PF11862	AT01_2238
AT01_2239	PF02653	AT01_2239
AT01_224	PF00005	ABC transporter
AT01_224	PF08402	TOBE domain
AT01_2240	PF13458	Periplasmic binding protein
AT01_2241	PF12568	Acetyltransferase (GNAT) domain
AT01_2242	PF00872	AT01_2242
AT01_2243	PF00140	Sigma-70 factor, region 1
AT01_2243	PF04542	Sigma-70 region 2
AT01_2243	PF04545	Sigma-70, region 4
AT01_2244	PF02687	AT01_2244
AT01_2245	PF00005	ABC transporter
AT01_2246	PF00448	SRP54-type protein, GTPase domain
AT01_2246	PF02881	SRP54-type protein, helical bundle domain
AT01_2247	PF03602	Conserved hypothetical protein 95
AT01_2248	PF06611	AT01_2248
AT01_2249	PF10694	Protein of unknown function (DUF2500)
AT01_225	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2250	PF08850	AT01_2250
AT01_2251	PF07947	AT01_2251
AT01_2252	PF00122	E1-E2 ATPase
AT01_2252	PF00403	Heavy-metal-associated domain
AT01_2252	PF00702	haloacid dehalogenase-like hydrolase
AT01_2253	PF01206	Sulfurtransferase TusA
AT01_2254	PF02592	AT01_2254
AT01_2255	PF08786	Domain of unknown function (DUF1795)
AT01_2256	PF02754	AT01_2256
AT01_2256	PF13183	4Fe-4S dicluster domain
AT01_2257	PF00890	FAD binding domain
AT01_2258	PF01266	FAD dependent oxidoreductase
AT01_2258	PF04324	BFD-like [2Fe-2S] binding domain
AT01_2259	PF07690	Major Facilitator Superfamily
AT01_226	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2260	PF03009	Glycerophosphoryl diester phosphodiesterase family
AT01_2261	PF08282	haloacid dehalogenase-like hydrolase
AT01_2262	PF12146	Putative lysophospholipase
AT01_2263	PF01810	AT01_2263
AT01_2264	PF01810	AT01_2264
AT01_2265	PF00270	DEAD/DEAH box helicase
AT01_2265	PF00271	Helicase conserved C-terminal domain
AT01_2265	PF00570	HRDC domain
AT01_2265	PF09382	RQC domain
AT01_2265	PF16124	AT01_2265
AT01_2266	PF02253	Phospholipase A1
AT01_2267	PF03061	Thioesterase superfamily
AT01_2268	PF00892	EamA-like transporter family
AT01_2269	PF01544	CorA-like Mg2+ transporter protein
AT01_227	PF06917	Periplasmic pectate lyase
AT01_2270	PF05523	WxcM-like, C-terminal
AT01_2271	PF09370	TIM-barrel signal transduction protein
AT01_2272	PF06792	Uncharacterised protein family (UPF0261)
AT01_2273	PF02796	Helix-turn-helix domain of resolvase
AT01_2274	PF00580	UvrD/REP helicase N-terminal domain
AT01_2274	PF13361	UvrD-like helicase C-terminal domain
AT01_2275	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2276	PF00589	Phage integrase family
AT01_2276	PF02899	Phage integrase, N-terminal SAM-like domain
AT01_2277	PF04340	Protein of unknown function, DUF484
AT01_2278	PF01678	Diaminopimelate epimerase
AT01_2279	PF13627	AT01_2279
AT01_228	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_2280	PF01491	Frataxin-like domain
AT01_2281	PF01295	AT01_2281
AT01_2281	PF12633	AT01_2281
AT01_2282	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AT01_2282	PF03900	Porphobilinogen deaminase, C-terminal domain
AT01_2283	PF02602	Uroporphyrinogen-III synthase HemD
AT01_2284	PF04375	AT01_2284
AT01_2285	PF07219	AT01_2285
AT01_229	PF07883	Cupin domain
AT01_2290	PF00324	Amino acid permease
AT01_2291	PF03808	AT01_2291
AT01_2292	PF06899	AT01_2292
AT01_2293	PF07429	AT01_2293
AT01_2294	PF01943	AT01_2294
AT01_2295	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AT01_2296	PF00583	Acetyltransferase (GNAT) family
AT01_2297	PF00483	Nucleotidyl transferase
AT01_2298	PF16363	AT01_2298
AT01_2299	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AT01_2299	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AT01_2299	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AT01_23	PF06857	AT01_23
AT01_230	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2300	PF02350	UDP-N-acetylglucosamine 2-epimerase
AT01_2301	PF02706	Chain length determinant protein
AT01_2302	PF00953	Glycosyl transferase family 4
AT01_2303	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_2303	PF07497	Rho termination factor, RNA-binding domain
AT01_2303	PF07498	Rho termination factor, N-terminal domain
AT01_2304	PF00085	Thioredoxin
AT01_2305	PF00270	DEAD/DEAH box helicase
AT01_2305	PF00271	Helicase conserved C-terminal domain
AT01_2306	PF02541	Ppx/GppA phosphatase family
AT01_2307	PF00580	UvrD/REP helicase N-terminal domain
AT01_2307	PF13361	UvrD-like helicase C-terminal domain
AT01_2309	PF13616	PPIC-type PPIASE domain
AT01_231	PF14002	AT01_231
AT01_2311	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_2311	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_2312	PF00577	Outer membrane usher protein
AT01_2312	PF13953	PapC C-terminal domain
AT01_2312	PF13954	PapC N-terminal domain
AT01_2313	PF00419	Fimbrial protein
AT01_2314	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_2314	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_2315	PF06958	S-type Pyocin
AT01_2316	PF06530	AT01_2316
AT01_2317	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AT01_2317	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AT01_2318	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2318	PF03466	LysR substrate binding domain
AT01_232	PF02550	Acetyl-CoA hydrolase/transferase N-terminal domain
AT01_232	PF13336	Acetyl-CoA hydrolase/transferase C-terminal domain
AT01_2320	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_2320	PF00585	C-terminal regulatory domain of Threonine dehydratase
AT01_2321	PF00920	Dehydratase family
AT01_2322	PF01063	Aminotransferase class IV
AT01_2323	PF13710	ACT domain
AT01_2324	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_2324	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_2324	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_2325	PF01078	Magnesium chelatase, subunit ChlI
AT01_2325	PF13335	AT01_2325
AT01_2325	PF13541	Subunit ChlI of Mg-chelatase
AT01_2326	PF04219	AT01_2326
AT01_2327	PF02653	AT01_2327
AT01_2328	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2328	PF03466	LysR substrate binding domain
AT01_2329	PF02653	AT01_2329
AT01_233	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_233	PF03466	LysR substrate binding domain
AT01_2330	PF00005	ABC transporter
AT01_2331	PF13407	Periplasmic binding protein domain
AT01_2339	PF01177	Asp/Glu/Hydantoin racemase
AT01_234	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_2340	PF00593	TonB dependent receptor
AT01_2340	PF07715	TonB-dependent Receptor Plug Domain
AT01_2342	PF05958	tRNA (Uracil-5-)-methyltransferase
AT01_2343	PF07226	AT01_2343
AT01_2344	PF00440	Bacterial regulatory proteins, tetR family
AT01_2345	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2345	PF03466	LysR substrate binding domain
AT01_2346	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AT01_2346	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_2347	PF00462	Glutaredoxin
AT01_2347	PF08534	Redoxin
AT01_2348	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AT01_2348	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_2349	PF03544	Gram-negative bacterial TonB protein C-terminal
AT01_235	PF03308	ArgK protein
AT01_2350	PF00529	HlyD family secretion protein
AT01_2351	PF00005	ABC transporter
AT01_2351	PF00664	ABC transporter transmembrane region
AT01_2353	PF06438	Heme-binding protein A (HasA)
AT01_2354	PF06438	Heme-binding protein A (HasA)
AT01_2355	PF06438	Heme-binding protein A (HasA)
AT01_2356	PF06438	Heme-binding protein A (HasA)
AT01_2357	PF06438	Heme-binding protein A (HasA)
AT01_2358	PF00593	TonB dependent receptor
AT01_2358	PF07715	TonB-dependent Receptor Plug Domain
AT01_236	PF01642	Methylmalonyl-CoA mutase
AT01_236	PF02310	B12 binding domain
AT01_2360	PF00206	Lyase
AT01_2360	PF14698	Argininosuccinate lyase C-terminal
AT01_2361	PF00696	Amino acid kinase family
AT01_2362	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AT01_2362	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AT01_2363	PF01546	Peptidase family M20/M25/M40
AT01_2363	PF07687	Peptidase dimerisation domain
AT01_2364	PF00311	Phosphoenolpyruvate carboxylase
AT01_2366	PF02219	Methylenetetrahydrofolate reductase
AT01_237	PF03881	Fructosamine kinase
AT01_2370	PF00696	Amino acid kinase family
AT01_2370	PF00742	Homoserine dehydrogenase
AT01_2370	PF03447	Homoserine dehydrogenase, NAD binding domain
AT01_2371	PF01053	Cys/Met metabolism PLP-dependent enzyme
AT01_2372	PF01340	Met Apo-repressor, MetJ
AT01_2373	PF01197	Ribosomal protein L31
AT01_2374	PF00270	DEAD/DEAH box helicase
AT01_2374	PF00271	Helicase conserved C-terminal domain
AT01_2375	PF00356	Bacterial regulatory proteins, lacI family
AT01_2375	PF13377	Periplasmic binding protein-like domain
AT01_2376	PF05036	Sporulation related domain
AT01_2377	PF00227	Proteasome subunit
AT01_2378	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_2378	PF07724	AAA domain (Cdc48 subfamily)
AT01_2378	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_2379	PF01040	UbiA prenyltransferase family
AT01_238	PF00950	AT01_238
AT01_2380	PF03737	Demethylmenaquinone methyltransferase
AT01_2381	PF06005	Protein of unknown function (DUF904)
AT01_2382	PF00230	Major intrinsic protein
AT01_2383	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_2383	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_2384	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AT01_2385	PF07690	Major Facilitator Superfamily
AT01_2386	PF00175	Oxidoreductase NAD-binding domain
AT01_2386	PF00970	Oxidoreductase FAD-binding domain
AT01_2387	PF05656	AT01_2387
AT01_2388	PF07305	AT01_2388
AT01_2389	PF00121	Triosephosphate isomerase
AT01_239	PF00950	AT01_239
AT01_2390	PF13531	Bacterial extracellular solute-binding protein
AT01_2391	PF00365	Phosphofructokinase
AT01_2392	PF01545	Cation efflux family
AT01_2392	PF16916	AT01_2392
AT01_2393	PF07813	LTXXQ motif family protein
AT01_2394	PF00072	Response regulator receiver domain
AT01_2394	PF00486	Transcriptional regulatory protein, C terminal
AT01_2395	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2395	PF00672	HAMP domain
AT01_2395	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2395	PF16527	AT01_2395
AT01_2396	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AT01_2396	PF02805	Metal binding domain of Ada
AT01_2396	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AT01_2396	PF12833	Helix-turn-helix domain
AT01_2397	PF00588	SpoU rRNA Methylase family
AT01_2398	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_2398	PF06426	Serine acetyltransferase, N-terminal
AT01_2399	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AT01_2399	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AT01_24	PF03328	HpcH/HpaI aldolase/citrate lyase family
AT01_240	PF00005	ABC transporter
AT01_2400	PF02556	Preprotein translocase subunit SecB
AT01_2401	PF00462	Glutaredoxin
AT01_2402	PF00581	Rhodanese-like domain
AT01_2403	PF01676	Metalloenzyme superfamily
AT01_2403	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AT01_2404	PF01551	Peptidase family M23
AT01_2405	PF04748	Divergent polysaccharide deacetylase
AT01_2406	PF00107	Zinc-binding dehydrogenase
AT01_2406	PF08240	Alcohol dehydrogenase GroES-like domain
AT01_2407	PF00155	Aminotransferase class I and II
AT01_2408	PF01370	NAD dependent epimerase/dehydratase family
AT01_2409	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AT01_241	PF01297	Periplasmic solute binding protein family
AT01_2410	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AT01_2411	PF00534	Glycosyl transferases group 1
AT01_2411	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AT01_2412	PF00535	Glycosyl transferase family 2
AT01_2413	PF01467	Cytidylyltransferase
AT01_2414	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AT01_2414	PF06827	Zinc finger found in FPG and IleRS
AT01_2414	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AT01_2415	PF00471	Ribosomal protein L33
AT01_2416	PF00830	Ribosomal L28 family
AT01_2417	PF04002	RadC-like JAB domain
AT01_2418	PF02441	Flavoprotein
AT01_2418	PF04127	DNA / pantothenate metabolism flavoprotein
AT01_2419	PF00692	dUTPase
AT01_242	PF01464	Transglycosylase SLT domain
AT01_2420	PF00440	Bacterial regulatory proteins, tetR family
AT01_2421	PF00156	Phosphoribosyl transferase domain
AT01_2422	PF01138	3' exoribonuclease family, domain 1
AT01_2422	PF03725	3' exoribonuclease family, domain 2
AT01_2423	PF03755	AT01_2423
AT01_2423	PF08340	AT01_2423
AT01_2424	PF00563	EAL domain
AT01_2424	PF00990	GGDEF domain
AT01_2424	PF13426	PAS domain
AT01_2425	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_2426	PF01773	Na+ dependent nucleoside transporter N-terminus
AT01_2426	PF07662	Na+ dependent nucleoside transporter C-terminus
AT01_2427	PF12098	AT01_2427
AT01_2428	PF03458	AT01_2428
AT01_2429	PF01653	NAD-dependent DNA ligase adenylation domain
AT01_2429	PF03120	NAD-dependent DNA ligase OB-fold domain
AT01_243	PF01914	AT01_243
AT01_2430	PF00625	Guanylate kinase
AT01_2431	PF01192	RNA polymerase Rpb6
AT01_2432	PF02824	TGS domain
AT01_2432	PF04607	Region found in RelA / SpoT proteins
AT01_2432	PF13291	ACT domain
AT01_2432	PF13328	HD domain
AT01_2433	PF00588	SpoU rRNA Methylase family
AT01_2433	PF12105	SpoU, rRNA methylase, C-terminal
AT01_2434	PF00270	DEAD/DEAH box helicase
AT01_2434	PF00271	Helicase conserved C-terminal domain
AT01_2434	PF17191	AT01_2434
AT01_2435	PF03616	AT01_2435
AT01_2436	PF00860	Permease family
AT01_2437	PF05170	AT01_2437
AT01_2438	PF00196	Bacterial regulatory proteins, luxR family
AT01_2438	PF08448	PAS fold
AT01_2439	PF00196	Bacterial regulatory proteins, luxR family
AT01_2440	PF00196	Bacterial regulatory proteins, luxR family
AT01_2440	PF08448	PAS fold
AT01_2441	PF00196	Bacterial regulatory proteins, luxR family
AT01_2441	PF08448	PAS fold
AT01_2442	PF00196	Bacterial regulatory proteins, luxR family
AT01_2442	PF08448	PAS fold
AT01_2443	PF00196	Bacterial regulatory proteins, luxR family
AT01_2443	PF08448	PAS fold
AT01_2444	PF00196	Bacterial regulatory proteins, luxR family
AT01_2444	PF08448	PAS fold
AT01_2445	PF00196	Bacterial regulatory proteins, luxR family
AT01_2445	PF08448	PAS fold
AT01_2446	PF13693	Winged helix-turn-helix DNA-binding
AT01_2447	PF00583	Acetyltransferase (GNAT) family
AT01_2447	PF09500	Putative thioesterase (yiiD_Cterm)
AT01_2448	PF02580	D-Tyr-tRNA(Tyr) deacylase
AT01_2449	PF03631	AT01_2449
AT01_2450	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2451	PF00009	Elongation factor Tu GTP binding domain
AT01_2451	PF00679	Elongation factor G C-terminus
AT01_2451	PF03144	Elongation factor Tu domain 2
AT01_2452	PF00120	Glutamine synthetase, catalytic domain
AT01_2452	PF03951	Glutamine synthetase, beta-Grasp domain
AT01_2453	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2453	PF00989	PAS fold
AT01_2453	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2454	PF00072	Response regulator receiver domain
AT01_2454	PF00158	Sigma-54 interaction domain
AT01_2454	PF02954	Bacterial regulatory protein, Fis family
AT01_2455	PF04055	Radical SAM superfamily
AT01_2455	PF06969	HemN C-terminal domain
AT01_2456	PF04220	AT01_2456
AT01_2457	PF01926	50S ribosome-binding GTPase
AT01_2458	PF00476	DNA polymerase family A
AT01_2458	PF01367	5'-3' exonuclease, C-terminal SAM fold
AT01_2458	PF01612	3'-5' exonuclease
AT01_2458	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AT01_2459	PF01323	DSBA-like thioredoxin domain
AT01_2460	PF01636	Phosphotransferase enzyme family
AT01_2461	PF06288	Protein of unknown function (DUF1040)
AT01_2462	PF12804	MobA-like NTP transferase domain
AT01_2463	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AT01_2468	PF00392	Bacterial regulatory proteins, gntR family
AT01_2468	PF07729	FCD domain
AT01_2469	PF00356	Bacterial regulatory proteins, lacI family
AT01_2469	PF13377	Periplasmic binding protein-like domain
AT01_247	PF04474	AT01_247
AT01_2470	PF07690	Major Facilitator Superfamily
AT01_2471	PF00294	pfkB family carbohydrate kinase
AT01_2472	PF13407	Periplasmic binding protein domain
AT01_2473	PF02653	AT01_2473
AT01_2474	PF00005	ABC transporter
AT01_2475	PF05025	RbsD / FucU transport protein family
AT01_2476	PF02705	AT01_2476
AT01_2477	PF07728	AAA domain (dynein-related subfamily)
AT01_2477	PF12592	Protein of unknown function (DUF3763)
AT01_2478	PF05762	VWA domain containing CoxE-like protein
AT01_2479	PF07077	AT01_2479
AT01_248	PF13619	AT01_248
AT01_2480	PF03590	Aspartate-ammonia ligase
AT01_2481	PF01037	AsnC family
AT01_2481	PF13404	AsnC-type helix-turn-helix domain
AT01_2482	PF00258	Flavodoxin
AT01_2483	PF01134	Glucose inhibited division protein A
AT01_2483	PF13932	GidA associated domain 3
AT01_2484	PF02527	rRNA small subunit methyltransferase G
AT01_2485	PF03899	AT01_2485
AT01_2486	PF00119	ATP synthase A chain
AT01_2487	PF00137	ATP synthase subunit C
AT01_2488	PF00430	ATP synthase B/B' CF(0)
AT01_2489	PF00213	ATP synthase delta (OSCP) subunit
AT01_249	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AT01_249	PF02824	TGS domain
AT01_249	PF03129	Anticodon binding domain
AT01_249	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AT01_2490	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_2490	PF00306	ATP synthase alpha/beta chain, C terminal domain
AT01_2490	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AT01_2491	PF00231	ATP synthase
AT01_2492	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AT01_2492	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AT01_2493	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AT01_2493	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AT01_2494	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_2494	PF12804	MobA-like NTP transferase domain
AT01_2495	PF01380	SIS domain
AT01_2495	PF13522	Glutamine amidotransferase domain
AT01_2497	PF12849	PBP superfamily domain
AT01_2498	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2499	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_25	PF04223	Citrate lyase, alpha subunit (CitF)
AT01_250	PF00707	Translation initiation factor IF-3, C-terminal domain
AT01_2500	PF00005	ABC transporter
AT01_2501	PF01895	PhoU domain
AT01_2502	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_2503	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2504	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2505	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2506	PF00860	Permease family
AT01_2507	PF03928	Domain of unknown function (DUF336)
AT01_2508	PF00072	Response regulator receiver domain
AT01_2508	PF00196	Bacterial regulatory proteins, luxR family
AT01_2509	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2509	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_251	PF01632	Ribosomal protein L35
AT01_2510	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_2510	PF02743	Cache domain
AT01_2511	PF07055	Enoyl reductase FAD binding domain
AT01_2511	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AT01_2511	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AT01_2512	PF01926	50S ribosome-binding GTPase
AT01_2512	PF10396	GTP-binding protein TrmE N-terminus
AT01_2512	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AT01_2513	PF02096	60Kd inner membrane protein
AT01_2513	PF14849	YidC periplasmic domain
AT01_2514	PF01809	AT01_2514
AT01_2515	PF00825	Ribonuclease P
AT01_2516	PF00468	Ribosomal protein L34
AT01_2517	PF00308	Bacterial dnaA  protein
AT01_2517	PF08299	Bacterial dnaA protein helix-turn-helix
AT01_2517	PF11638	DnaA N-terminal domain
AT01_2518	PF00712	DNA polymerase III beta subunit, N-terminal domain
AT01_2518	PF02767	DNA polymerase III beta subunit, central domain
AT01_2518	PF02768	DNA polymerase III beta subunit, C-terminal domain
AT01_2519	PF02463	RecF/RecN/SMC N terminal domain
AT01_252	PF00453	Ribosomal protein L20
AT01_2520	PF00204	DNA gyrase B
AT01_2520	PF00986	DNA gyrase B subunit, carboxyl terminus
AT01_2520	PF01751	Toprim domain
AT01_2520	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2521	PF08282	haloacid dehalogenase-like hydrolase
AT01_2522	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AT01_2523	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_2524	PF12566	AT01_2524
AT01_2525	PF07119	AT01_2525
AT01_2526	PF00011	Hsp20/alpha crystallin family
AT01_2527	PF00011	Hsp20/alpha crystallin family
AT01_2528	PF02080	TrkA-C domain
AT01_2528	PF06826	AT01_2528
AT01_2529	PF00155	Aminotransferase class I and II
AT01_253	PF01409	tRNA synthetases class II core domain (F)
AT01_253	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AT01_2530	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AT01_2530	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AT01_2531	PF07690	Major Facilitator Superfamily
AT01_2533	PF00691	OmpA family
AT01_2533	PF13488	AT01_2533
AT01_2536	PF13673	Acetyltransferase (GNAT) domain
AT01_2537	PF03352	Methyladenine glycosylase
AT01_2538	PF02091	Glycyl-tRNA synthetase alpha subunit
AT01_2539	PF02092	AT01_2539
AT01_2539	PF05746	DALR anticodon binding domain
AT01_254	PF01588	Putative tRNA binding domain
AT01_254	PF03147	Ferredoxin-fold anticodon binding domain
AT01_254	PF03483	B3/4 domain
AT01_254	PF03484	tRNA synthetase B5 domain
AT01_2540	PF11254	AT01_2540
AT01_2542	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_2542	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AT01_2542	PF02378	Phosphotransferase system, EIIC
AT01_2543	PF01232	Mannitol dehydrogenase Rossmann domain
AT01_2543	PF08125	Mannitol dehydrogenase C-terminal domain
AT01_2544	PF01810	AT01_2544
AT01_2545	PF05068	Mannitol repressor
AT01_2546	PF00155	Aminotransferase class I and II
AT01_2546	PF00392	Bacterial regulatory proteins, gntR family
AT01_2547	PF10928	Protein of unknown function (DUF2810)
AT01_2548	PF04014	Antidote-toxin recognition MazE
AT01_2549	PF01850	PIN domain
AT01_255	PF00216	Bacterial DNA-binding protein
AT01_2550	PF03473	MOSC domain
AT01_2550	PF03475	3-alpha domain
AT01_2551	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_2551	PF16591	AT01_2551
AT01_2552	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AT01_2552	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AT01_2553	PF02634	FdhD/NarQ family
AT01_2554	PF00384	Molybdopterin oxidoreductase
AT01_2554	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AT01_2555	PF00384	Molybdopterin oxidoreductase
AT01_2555	PF01568	Molydopterin dinucleotide binding domain
AT01_2556	PF09163	Formate dehydrogenase N, transmembrane
AT01_2556	PF13247	4Fe-4S dicluster domain
AT01_2557	PF01292	Prokaryotic cytochrome b561
AT01_2558	PF04216	Protein involved in formate dehydrogenase formation
AT01_2559	PF03841	L-seryl-tRNA selenium transferase
AT01_2559	PF12390	AT01_2559
AT01_256	PF05154	AT01_256
AT01_2560	PF00009	Elongation factor Tu GTP binding domain
AT01_2560	PF09106	Elongation factor SelB, winged helix
AT01_2560	PF09107	Elongation factor SelB, winged helix
AT01_2561	PF01381	Helix-turn-helix
AT01_2562	PF13657	HipA N-terminal domain
AT01_2563	PF07690	Major Facilitator Superfamily
AT01_2564	PF01757	AT01_2564
AT01_2568	PF07690	Major Facilitator Superfamily
AT01_2569	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2569	PF03466	LysR substrate binding domain
AT01_257	PF01032	FecCD transport family
AT01_2570	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_2570	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_2571	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_2571	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_2573	PF13407	Periplasmic binding protein domain
AT01_2574	PF00005	ABC transporter
AT01_2575	PF02653	AT01_2575
AT01_2576	PF12833	Helix-turn-helix domain
AT01_2576	PF13377	Periplasmic binding protein-like domain
AT01_2578	PF00589	Phage integrase family
AT01_2578	PF13356	Domain of unknown function (DUF4102)
AT01_2579	PF04326	Divergent AAA domain
AT01_2579	PF13749	ATP-dependent DNA helicase recG C-terminal
AT01_258	PF00255	Glutathione peroxidase
AT01_2580	PF04606	AT01_2580
AT01_2582	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AT01_2584	PF10554	AT01_2584
AT01_2586	PF17345	AT01_2586
AT01_2587	PF03288	Poxvirus D5 protein-like
AT01_2587	PF08273	Zinc-binding domain of primase-helicase
AT01_2587	PF08706	AT01_2587
AT01_2587	PF13362	Toprim domain
AT01_2589	PF03212	Pertactin
AT01_2589	PF03797	Autotransporter beta-domain
AT01_259	PF00005	ABC transporter
AT01_2590	PF01175	Urocanase
AT01_2590	PF17391	AT01_2590
AT01_2590	PF17392	AT01_2590
AT01_2591	PF00221	Aromatic amino acid lyase
AT01_2592	PF00324	Amino acid permease
AT01_2593	PF12146	Putative lysophospholipase
AT01_2594	PF02566	OsmC-like protein
AT01_2595	PF00884	Sulfatase
AT01_2595	PF08019	AT01_2595
AT01_2596	PF00072	Response regulator receiver domain
AT01_2596	PF00196	Bacterial regulatory proteins, luxR family
AT01_2597	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2597	PF05231	AT01_2597
AT01_2597	PF07730	Histidine kinase
AT01_2598	PF07690	Major Facilitator Superfamily
AT01_26	PF03802	AT01_26
AT01_260	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AT01_2600	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_2601	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2602	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_2602	PF12911	AT01_2602
AT01_2603	PF00005	ABC transporter
AT01_2603	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_2604	PF00005	ABC transporter
AT01_2604	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_2605	PF11658	AT01_2605
AT01_2606	PF11120	AT01_2606
AT01_2607	PF10995	AT01_2607
AT01_2608	PF10945	AT01_2608
AT01_2609	PF06564	YhjQ protein
AT01_261	PF00535	Glycosyl transferase family 2
AT01_2610	PF00535	Glycosyl transferase family 2
AT01_2610	PF03552	Cellulose synthase
AT01_2610	PF07238	PilZ domain
AT01_2611	PF03170	Bacterial cellulose synthase subunit
AT01_2612	PF01270	Glycosyl hydrolases family 8
AT01_2613	PF05420	AT01_2613
AT01_2613	PF13432	Tetratricopeptide repeat
AT01_2613	PF14559	Tetratricopeptide repeat
AT01_2614	PF00563	EAL domain
AT01_2614	PF17154	AT01_2614
AT01_2615	PF00375	Sodium:dicarboxylate symporter family
AT01_2616	PF00675	Insulinase (Peptidase family M16)
AT01_2616	PF05193	Peptidase M16 inactive domain
AT01_2617	PF00294	pfkB family carbohydrate kinase
AT01_2618	PF01361	Tautomerase enzyme
AT01_2619	PF00563	EAL domain
AT01_262	PF00551	Formyl transferase
AT01_262	PF01370	NAD dependent epimerase/dehydratase family
AT01_262	PF02911	Formyl transferase, C-terminal domain
AT01_2620	PF05170	AT01_2620
AT01_2621	PF02611	CDP-diacylglycerol pyrophosphatase
AT01_2622	PF03631	AT01_2622
AT01_2623	PF03212	Pertactin
AT01_2623	PF03797	Autotransporter beta-domain
AT01_2624	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AT01_2624	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_2625	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AT01_2626	PF01432	Peptidase family M3
AT01_2627	PF04445	Putative SAM-dependent methyltransferase
AT01_2628	PF00413	Matrixin
AT01_2628	PF08548	Peptidase M10 serralysin C terminal
AT01_2629	PF08548	Peptidase M10 serralysin C terminal
AT01_263	PF01522	Polysaccharide deacetylase
AT01_2630	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AT01_2630	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AT01_2631	PF00582	Universal stress protein family
AT01_2632	PF10625	AT01_2632
AT01_2633	PF01384	AT01_2633
AT01_2636	PF01261	Xylose isomerase-like TIM barrel
AT01_2637	PF00171	Aldehyde dehydrogenase family
AT01_2638	PF04962	KduI/IolB family
AT01_2639	PF01380	SIS domain
AT01_2639	PF01418	Helix-turn-helix domain, rpiR family
AT01_264	PF02366	AT01_264
AT01_2640	PF00294	pfkB family carbohydrate kinase
AT01_2640	PF09863	Uncharacterized protein conserved in bacteria (DUF2090)
AT01_2641	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_2641	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_2641	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_2642	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AT01_2642	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AT01_2643	PF01261	Xylose isomerase-like TIM barrel
AT01_2644	PF01261	Xylose isomerase-like TIM barrel
AT01_2645	PF00583	Acetyltransferase (GNAT) family
AT01_2646	PF02678	Pirin
AT01_2647	PF00356	Bacterial regulatory proteins, lacI family
AT01_2647	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_2648	PF02447	AT01_2648
AT01_2649	PF01202	Shikimate kinase
AT01_265	PF00892	EamA-like transporter family
AT01_2650	PF01914	AT01_2650
AT01_2651	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AT01_2651	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AT01_2655	PF13437	HlyD family secretion protein
AT01_2656	PF00005	ABC transporter
AT01_2656	PF00664	ABC transporter transmembrane region
AT01_2656	PF03412	Peptidase C39 family
AT01_2657	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_2657	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_2657	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_2658	PF03306	Alpha-acetolactate decarboxylase
AT01_2659	PF06580	AT01_2659
AT01_2659	PF07694	5TMR of 5TMR-LYT
AT01_266	PF00893	Small Multidrug Resistance protein
AT01_2660	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_2660	PF03466	LysR substrate binding domain
AT01_2661	PF00128	Alpha amylase, catalytic domain
AT01_2661	PF02806	Alpha amylase, C-terminal all-beta domain
AT01_2661	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AT01_2662	PF00128	Alpha amylase, catalytic domain
AT01_2662	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AT01_2663	PF00483	Nucleotidyl transferase
AT01_2664	PF00534	Glycosyl transferases group 1
AT01_2664	PF08323	Starch synthase catalytic domain
AT01_2665	PF00343	Carbohydrate phosphorylase
AT01_2666	PF01266	FAD dependent oxidoreductase
AT01_2666	PF16901	AT01_2666
AT01_2667	PF00455	AT01_2667
AT01_2667	PF08220	DeoR-like helix-turn-helix domain
AT01_2668	PF01694	Rhomboid family
AT01_2668	PF12122	Protein of unknown function (DUF3582)
AT01_2669	PF00581	Rhodanese-like domain
AT01_267	PF00877	NlpC/P60 family
AT01_2671	PF00196	Bacterial regulatory proteins, luxR family
AT01_2672	PF00343	Carbohydrate phosphorylase
AT01_2675	PF01106	NifU-like domain
AT01_2675	PF01521	Iron-sulphur cluster biosynthesis
AT01_2676	PF00156	Phosphoribosyl transferase domain
AT01_2677	PF00561	alpha/beta hydrolase fold
AT01_2678	PF07338	Protein of unknown function (DUF1471)
AT01_2679	PF09012	FeoC like transcriptional regulator
AT01_268	PF03099	Biotin/lipoate A/B protein ligase family
AT01_268	PF10437	Bacterial lipoate protein ligase C-terminus
AT01_2680	PF02421	Ferrous iron transport protein B
AT01_2680	PF07664	AT01_2680
AT01_2680	PF07670	Nucleoside recognition
AT01_2681	PF04023	FeoA domain
AT01_2682	PF00575	S1 RNA binding domain
AT01_2682	PF09371	Tex-like protein N-terminal domain
AT01_2682	PF12836	Helix-hairpin-helix motif
AT01_2682	PF16921	AT01_2682
AT01_2683	PF07690	Major Facilitator Superfamily
AT01_2685	PF01272	Transcription elongation factor, GreA/GreB, C-term
AT01_2685	PF03449	Transcription elongation factor, N-terminal
AT01_2686	PF00072	Response regulator receiver domain
AT01_2686	PF00486	Transcriptional regulatory protein, C terminal
AT01_2687	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2687	PF00672	HAMP domain
AT01_2687	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2688	PF01293	Phosphoenolpyruvate carboxykinase
AT01_2689	PF01430	Hsp33 protein
AT01_269	PF02696	AT01_269
AT01_2690	PF01479	S4 domain
AT01_2691	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2692	PF07095	Intracellular growth attenuator protein IgaA
AT01_2693	PF00293	NUDIX domain
AT01_2694	PF00905	Penicillin binding protein transpeptidase domain
AT01_2694	PF00912	Transglycosylase
AT01_2694	PF17092	AT01_2694
AT01_2695	PF11104	Type IV pilus assembly protein PilM;
AT01_2696	PF05137	AT01_2696
AT01_2699	PF00263	AT01_2699
AT01_2699	PF03958	Bacterial type II/III secretion system short domain
AT01_27	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
AT01_270	PF01497	Periplasmic binding protein
AT01_2700	PF01202	Shikimate kinase
AT01_2701	PF01761	3-dehydroquinate synthase
AT01_2702	PF05036	Sporulation related domain
AT01_2703	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AT01_2704	PF00834	Ribulose-phosphate 3 epimerase family
AT01_2705	PF13419	Haloacid dehalogenase-like hydrolase
AT01_2706	PF00579	tRNA synthetases class I (W and Y)
AT01_2707	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_2707	PF10414	Sirohaem synthase dimerisation region
AT01_2707	PF13241	Putative NAD(P)-binding
AT01_2707	PF14824	Sirohaem biosynthesis protein central
AT01_2708	PF01226	Formate/nitrite transporter
AT01_2709	PF13806	Rieske-like [2Fe-2S] domain
AT01_271	PF05171	Haemin-degrading HemS
AT01_2710	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AT01_2710	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AT01_2710	PF04324	BFD-like [2Fe-2S] binding domain
AT01_2710	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_2711	PF07969	Amidohydrolase family
AT01_2712	PF07690	Major Facilitator Superfamily
AT01_2713	PF11162	AT01_2713
AT01_2714	PF00593	TonB dependent receptor
AT01_2714	PF07715	TonB-dependent Receptor Plug Domain
AT01_2715	PF00356	Bacterial regulatory proteins, lacI family
AT01_2715	PF13377	Periplasmic binding protein-like domain
AT01_2716	PF02056	Family 4 glycosyl hydrolase
AT01_2716	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AT01_2717	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AT01_2718	PF05872	AT01_2718
AT01_2719	PF00117	Glutamine amidotransferase class-I
AT01_272	PF00593	TonB dependent receptor
AT01_272	PF07715	TonB-dependent Receptor Plug Domain
AT01_2721	PF00202	Aminotransferase class-III
AT01_2722	PF00027	Cyclic nucleotide-binding domain
AT01_2722	PF00325	Bacterial regulatory proteins, crp family
AT01_2723	PF02566	OsmC-like protein
AT01_2724	PF00485	Phosphoribulokinase / Uridine kinase family
AT01_2725	PF06794	Uncharacterised protein family (UPF0270)
AT01_2726	PF00561	alpha/beta hydrolase fold
AT01_2727	PF01810	AT01_2727
AT01_2728	PF02567	Phenazine biosynthesis-like protein
AT01_2729	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AT01_273	PF00793	DAHP synthetase I family
AT01_2730	PF00535	Glycosyl transferase family 2
AT01_2731	PF00005	ABC transporter
AT01_2731	PF12848	ABC transporter
AT01_2732	PF02525	Flavodoxin-like fold
AT01_2733	PF00999	Sodium/hydrogen exchanger family
AT01_2733	PF02254	TrkA-N domain
AT01_2734	PF09526	AT01_2734
AT01_2735	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AT01_2736	PF04102	SlyX
AT01_2737	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AT01_2737	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AT01_2738	PF08348	AT01_2738
AT01_2738	PF13309	AT01_2738
AT01_2739	PF02635	DsrE/DsrF-like family
AT01_274	PF03618	AT01_274
AT01_2740	PF02635	DsrE/DsrF-like family
AT01_2741	PF04077	DsrH like protein
AT01_2742	PF00164	Ribosomal protein S12/S23
AT01_2743	PF00177	Ribosomal protein S7p/S5e
AT01_2744	PF00009	Elongation factor Tu GTP binding domain
AT01_2744	PF00679	Elongation factor G C-terminus
AT01_2744	PF03144	Elongation factor Tu domain 2
AT01_2744	PF03764	Elongation factor G, domain IV
AT01_2744	PF14492	Elongation Factor G, domain II
AT01_2745	PF00009	Elongation factor Tu GTP binding domain
AT01_2745	PF03143	Elongation factor Tu C-terminal domain
AT01_2745	PF03144	Elongation factor Tu domain 2
AT01_2746	PF04324	BFD-like [2Fe-2S] binding domain
AT01_2747	PF00210	Ferritin-like domain
AT01_2748	PF00338	Ribosomal protein S10p/S20e
AT01_2749	PF00297	Ribosomal protein L3
AT01_275	PF00391	PEP-utilising enzyme, mobile domain
AT01_275	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AT01_275	PF02896	PEP-utilising enzyme, TIM barrel domain
AT01_2750	PF00573	Ribosomal protein L4/L1 family
AT01_2751	PF00276	Ribosomal protein L23
AT01_2752	PF00181	Ribosomal Proteins L2, RNA binding domain
AT01_2752	PF03947	Ribosomal Proteins L2, C-terminal domain
AT01_2753	PF00203	Ribosomal protein S19
AT01_2754	PF00237	Ribosomal protein L22p/L17e
AT01_2755	PF00189	Ribosomal protein S3, C-terminal domain
AT01_2755	PF07650	KH domain
AT01_2756	PF00252	Ribosomal protein L16p/L10e
AT01_2757	PF00831	Ribosomal L29 protein
AT01_2758	PF00366	Ribosomal protein S17
AT01_2759	PF00238	Ribosomal protein L14p/L23e
AT01_276	PF01594	AT01_276
AT01_2760	PF17136	AT01_2760
AT01_2761	PF00281	Ribosomal protein L5
AT01_2761	PF00673	ribosomal L5P family C-terminus
AT01_2762	PF00253	Ribosomal protein S14p/S29e
AT01_2763	PF00410	Ribosomal protein S8
AT01_2764	PF00347	Ribosomal protein L6
AT01_2765	PF00861	Ribosomal L18p/L5e family
AT01_2766	PF00333	Ribosomal protein S5, N-terminal domain
AT01_2766	PF03719	Ribosomal protein S5, C-terminal domain
AT01_2767	PF00327	Ribosomal protein L30p/L7e
AT01_2768	PF00828	Ribosomal protein L18e/L15
AT01_2769	PF00344	SecY translocase
AT01_277	PF01565	FAD binding domain
AT01_277	PF02913	FAD linked oxidases, C-terminal domain
AT01_277	PF13183	4Fe-4S dicluster domain
AT01_2770	PF00444	Ribosomal protein L36
AT01_2771	PF00416	Ribosomal protein S13/S18
AT01_2772	PF00411	Ribosomal protein S11
AT01_2773	PF00163	Ribosomal protein S4/S9 N-terminal domain
AT01_2773	PF01479	S4 domain
AT01_2774	PF01000	RNA polymerase Rpb3/RpoA insert domain
AT01_2774	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AT01_2774	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AT01_2775	PF01196	Ribosomal protein L17
AT01_2776	PF13411	MerR HTH family regulatory protein
AT01_2777	PF03889	AT01_2777
AT01_2778	PF01741	Large-conductance mechanosensitive channel, MscL
AT01_2779	PF02080	TrkA-C domain
AT01_2779	PF02254	TrkA-N domain
AT01_278	PF03061	Thioesterase superfamily
AT01_2780	PF01029	NusB family
AT01_2780	PF01189	NOL1/NOP2/sun family
AT01_2781	PF00551	Formyl transferase
AT01_2781	PF02911	Formyl transferase, C-terminal domain
AT01_2782	PF01327	Polypeptide deformylase
AT01_2783	PF02481	DNA recombination-mediator protein A
AT01_2787	PF02413	AT01_2787
AT01_2788	PF03406	AT01_2788
AT01_2788	PF12571	AT01_2788
AT01_279	PF01521	Iron-sulphur cluster biosynthesis
AT01_2790	PF04865	AT01_2790
AT01_2791	PF10761	AT01_2791
AT01_2792	PF10145	AT01_2792
AT01_2793	PF10963	AT01_2793
AT01_2796	PF13539	D-alanyl-D-alanine carboxypeptidase
AT01_2797	PF04550	AT01_2797
AT01_2798	PF10772	AT01_2798
AT01_2799	PF10758	AT01_2799
AT01_28	PF00939	Sodium:sulfate symporter transmembrane region
AT01_280	PF01458	Uncharacterized protein family (UPF0051)
AT01_2801	PF06891	AT01_2801
AT01_2802	PF05926	AT01_2802
AT01_2804	PF05944	AT01_2804
AT01_2805	PF05125	AT01_2805
AT01_2806	PF05929	AT01_2806
AT01_2807	PF03237	Terminase-like family
AT01_2807	PF06056	Putative ATPase subunit of terminase (gpP-like)
AT01_2807	PF17289	AT01_2807
AT01_2808	PF04860	Phage portal protein
AT01_2809	PF04606	AT01_2809
AT01_281	PF00005	ABC transporter
AT01_2811	PF05840	AT01_2811
AT01_2813	PF12961	Domain of Unknown Function with PDB structure (DUF3850)
AT01_2815	PF17282	AT01_2815
AT01_282	PF01458	Uncharacterized protein family (UPF0051)
AT01_2821	PF01381	Helix-turn-helix
AT01_2823	PF00589	Phage integrase family
AT01_2824	PF04361	AT01_2824
AT01_2825	PF01396	AT01_2825
AT01_2826	PF01300	Telomere recombination
AT01_2827	PF01488	Shikimate / quinate 5-dehydrogenase
AT01_2827	PF08501	Shikimate dehydrogenase substrate binding domain
AT01_2828	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_283	PF00266	Aminotransferase class-V
AT01_2834	PF00474	Sodium:solute symporter family
AT01_2835	PF04341	AT01_2835
AT01_2836	PF00501	AMP-binding enzyme
AT01_2836	PF13193	AMP-binding enzyme C-terminal domain
AT01_2836	PF16177	AT01_2836
AT01_2837	PF00375	Sodium:dicarboxylate symporter family
AT01_2838	PF00072	Response regulator receiver domain
AT01_2838	PF00196	Bacterial regulatory proteins, luxR family
AT01_2839	PF00072	Response regulator receiver domain
AT01_2839	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2839	PF01627	Hpt domain
AT01_2839	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_284	PF02657	Fe-S metabolism associated domain
AT01_2840	PF12833	Helix-turn-helix domain
AT01_2841	PF00924	Mechanosensitive ion channel
AT01_2841	PF12607	AT01_2841
AT01_2842	PF06568	AT01_2842
AT01_2843	PF00155	Aminotransferase class I and II
AT01_2843	PF00392	Bacterial regulatory proteins, gntR family
AT01_2844	PF00005	ABC transporter
AT01_2845	PF01032	FecCD transport family
AT01_2846	PF01497	Periplasmic binding protein
AT01_2847	PF05171	Haemin-degrading HemS
AT01_2848	PF00593	TonB dependent receptor
AT01_2848	PF07715	TonB-dependent Receptor Plug Domain
AT01_2849	PF10636	Hemin uptake protein hemP
AT01_285	PF03734	L,D-transpeptidase catalytic domain
AT01_2850	PF05925	Enterobacterial virulence protein IpgD
AT01_2851	PF07824	Type III secretion chaperone domain
AT01_2852	PF00891	O-methyltransferase
AT01_2853	PF01497	Periplasmic binding protein
AT01_2854	PF01032	FecCD transport family
AT01_2855	PF01032	FecCD transport family
AT01_2856	PF00005	ABC transporter
AT01_2857	PF09223	YodA lipocalin-like domain
AT01_2858	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_2859	PF01490	AT01_2859
AT01_286	PF04728	Lipoprotein leucine-zipper
AT01_2860	PF00871	Acetokinase family
AT01_2861	PF01228	Glycine radical
AT01_2861	PF02901	Pyruvate formate lyase
AT01_2864	PF03797	Autotransporter beta-domain
AT01_2864	PF12951	AT01_2864
AT01_2865	PF00196	Bacterial regulatory proteins, luxR family
AT01_2867	PF00577	Outer membrane usher protein
AT01_2867	PF13953	PapC C-terminal domain
AT01_2867	PF13954	PapC N-terminal domain
AT01_287	PF00224	Pyruvate kinase, barrel domain
AT01_287	PF02887	Pyruvate kinase, alpha/beta domain
AT01_2870	PF00419	Fimbrial protein
AT01_2872	PF00419	Fimbrial protein
AT01_2873	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_2873	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_2874	PF00577	Outer membrane usher protein
AT01_2874	PF13953	PapC C-terminal domain
AT01_2874	PF13954	PapC N-terminal domain
AT01_2875	PF00419	Fimbrial protein
AT01_2876	PF06961	AT01_2876
AT01_2878	PF00440	Bacterial regulatory proteins, tetR family
AT01_2879	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AT01_2880	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AT01_2881	PF02595	Glycerate kinase family
AT01_2882	PF02683	AT01_2882
AT01_2882	PF11412	Disulphide bond corrector protein DsbC
AT01_2882	PF13899	Thioredoxin-like
AT01_2883	PF03091	CutA1 divalent ion tolerance protein
AT01_2884	PF03605	AT01_2884
AT01_2885	PF00206	Lyase
AT01_2885	PF10415	Fumarase C C-terminus
AT01_2886	PF04186	AT01_2886
AT01_2887	PF00166	Chaperonin 10 Kd subunit
AT01_2888	PF00118	TCP-1/cpn60 chaperonin family
AT01_2889	PF13698	AT01_2889
AT01_2890	PF04055	Radical SAM superfamily
AT01_2890	PF13353	4Fe-4S single cluster domain
AT01_2891	PF01132	Elongation factor P (EF-P) OB domain
AT01_2891	PF08207	Elongation factor P (EF-P) KOW-like domain
AT01_2891	PF09285	Elongation factor P, C-terminal
AT01_2892	PF08085	AT01_2892
AT01_2894	PF00893	Small Multidrug Resistance protein
AT01_2895	PF08212	Lipocalin-like domain
AT01_2896	PF02313	Fumarate reductase subunit D
AT01_2897	PF02300	Fumarate reductase subunit C
AT01_2898	PF13085	2Fe-2S iron-sulfur cluster binding domain
AT01_2898	PF13183	4Fe-4S dicluster domain
AT01_2899	PF00890	FAD binding domain
AT01_2899	PF02910	Fumarate reductase flavoprotein C-term
AT01_29	PF01648	4'-phosphopantetheinyl transferase superfamily
AT01_2900	PF00152	tRNA synthetases class II (D, K and N)
AT01_2901	PF00924	Mechanosensitive ion channel
AT01_2901	PF12794	AT01_2901
AT01_2901	PF12795	AT01_2901
AT01_2902	PF02666	AT01_2902
AT01_2903	PF03193	Protein of unknown function, DUF258
AT01_2904	PF00929	Exonuclease
AT01_2908	PF08331	AT01_2908
AT01_2908	PF13484	AT01_2908
AT01_2909	PF01256	Carbohydrate kinase
AT01_2909	PF03853	YjeF-related protein N-terminus
AT01_291	PF01554	MatE
AT01_2910	PF02367	Uncharacterised P-loop hydrolase UPF0079
AT01_2911	PF01476	LysM domain
AT01_2911	PF01520	N-acetylmuramoyl-L-alanine amidase
AT01_2911	PF11741	AMIN domain
AT01_2912	PF01119	DNA mismatch repair protein, C-terminal domain
AT01_2912	PF08676	MutL C terminal dimerisation domain
AT01_2912	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2913	PF01715	IPP transferase
AT01_2914	PF17209	AT01_2914
AT01_2915	PF01926	50S ribosome-binding GTPase
AT01_2915	PF13167	AT01_2915
AT01_2915	PF16360	AT01_2915
AT01_2916	PF01145	SPFH domain / Band 7 family
AT01_2916	PF12221	AT01_2916
AT01_2917	PF01145	SPFH domain / Band 7 family
AT01_2918	PF09838	AT01_2918
AT01_2919	PF00709	Adenylosuccinate synthetase
AT01_292	PF00677	Lumazine binding domain
AT01_2920	PF02082	Transcriptional regulator
AT01_2921	PF00575	S1 RNA binding domain
AT01_2921	PF00773	RNB domain
AT01_2921	PF08206	Ribonuclease B OB domain
AT01_2921	PF08461	Ribonuclease R winged-helix domain
AT01_2922	PF00588	SpoU rRNA Methylase family
AT01_2922	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AT01_2923	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AT01_2923	PF02770	Acyl-CoA dehydrogenase, middle domain
AT01_2924	PF07338	Protein of unknown function (DUF1471)
AT01_2925	PF00326	Prolyl oligopeptidase family
AT01_2926	PF01250	Ribosomal protein S6
AT01_2927	PF01084	Ribosomal protein S18
AT01_2928	PF01281	Ribosomal protein L9, N-terminal domain
AT01_2928	PF03948	Ribosomal protein L9, C-terminal domain
AT01_2929	PF12582	AT01_2929
AT01_293	PF02353	Mycolic acid cyclopropane synthetase
AT01_2930	PF04225	Opacity-associated protein A LysM-like domain
AT01_2930	PF08525	AT01_2930
AT01_2931	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AT01_2931	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AT01_2932	PF01814	Hemerythrin HHE cation binding domain
AT01_2932	PF04405	AT01_2932
AT01_2933	PF00149	Calcineurin-like phosphoesterase
AT01_2933	PF02872	5'-nucleotidase, C-terminal domain
AT01_2934	PF00459	Inositol monophosphatase family
AT01_2935	PF09695	AT01_2935
AT01_2936	PF06526	Protein of unknown function (DUF1107)
AT01_2938	PF00571	CBS domain
AT01_2938	PF01595	AT01_2938
AT01_2938	PF03471	Transporter associated domain
AT01_2939	PF01625	Peptide methionine sulfoxide reductase
AT01_294	PF07690	Major Facilitator Superfamily
AT01_2940	PF01103	Surface antigen
AT01_2940	PF07244	Surface antigen variable number repeat
AT01_2940	PF17243	AT01_2940
AT01_2941	PF04357	AT01_2941
AT01_2942	PF06094	AIG2-like family
AT01_2943	PF00719	Inorganic pyrophosphatase
AT01_2944	PF00316	Fructose-1-6-bisphosphatase
AT01_2945	PF01225	Mur ligase family, catalytic domain
AT01_2945	PF02875	Mur ligase family, glutamate ligase domain
AT01_2945	PF08245	Mur ligase middle domain
AT01_2946	PF07338	Protein of unknown function (DUF1471)
AT01_2947	PF01316	Arginine repressor, DNA binding domain
AT01_2947	PF02863	Arginine repressor, C-terminal domain
AT01_2948	PF00056	lactate/malate dehydrogenase, NAD binding domain
AT01_2948	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AT01_2949	PF13693	Winged helix-turn-helix DNA-binding
AT01_295	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_295	PF03466	LysR substrate binding domain
AT01_2950	PF02316	Mu DNA-binding domain
AT01_2951	PF02316	Mu DNA-binding domain
AT01_2952	PF00348	Polyprenyl synthetase
AT01_2953	PF00829	Ribosomal prokaryotic L21 protein
AT01_2954	PF01016	Ribosomal L27 protein
AT01_2955	PF00892	EamA-like transporter family
AT01_2956	PF01018	GTP1/OBG
AT01_2956	PF01926	50S ribosome-binding GTPase
AT01_2957	PF00512	His Kinase A (phospho-acceptor) domain
AT01_2957	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_2958	PF00072	Response regulator receiver domain
AT01_2958	PF00486	Transcriptional regulatory protein, C terminal
AT01_2959	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AT01_296	PF00356	Bacterial regulatory proteins, lacI family
AT01_296	PF13377	Periplasmic binding protein-like domain
AT01_2960	PF01272	Transcription elongation factor, GreA/GreB, C-term
AT01_2960	PF03449	Transcription elongation factor, N-terminal
AT01_2961	PF01985	CRS1 / YhbY (CRM) domain
AT01_2962	PF01728	FtsJ-like methyltransferase
AT01_2963	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_2963	PF01434	Peptidase family M41
AT01_2963	PF06480	FtsH Extracellular
AT01_2964	PF00809	Pterin binding enzyme
AT01_2965	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AT01_2965	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AT01_2965	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AT01_2965	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AT01_2966	PF03840	Preprotein translocase SecG subunit
AT01_2969	PF02576	Uncharacterised BCR, YhbC family COG0779
AT01_2969	PF17384	AT01_2969
AT01_2970	PF08529	NusA N-terminal domain
AT01_2970	PF13184	NusA-like KH domain
AT01_2970	PF14520	Helix-hairpin-helix domain
AT01_2971	PF00009	Elongation factor Tu GTP binding domain
AT01_2971	PF03144	Elongation factor Tu domain 2
AT01_2971	PF04760	Translation initiation factor IF-2, N-terminal region
AT01_2971	PF08364	AT01_2971
AT01_2971	PF11987	Translation-initiation factor 2
AT01_2972	PF02033	Ribosome-binding factor A
AT01_2973	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AT01_2973	PF09157	Pseudouridine synthase II TruB, C-terminal
AT01_2973	PF16198	AT01_2973
AT01_2974	PF00312	Ribosomal protein S15
AT01_2975	PF00013	KH domain
AT01_2975	PF00575	S1 RNA binding domain
AT01_2975	PF01138	3' exoribonuclease family, domain 1
AT01_2975	PF03725	3' exoribonuclease family, domain 2
AT01_2975	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AT01_2976	PF07719	Tetratricopeptide repeat
AT01_2976	PF13181	Tetratricopeptide repeat
AT01_2977	PF00270	DEAD/DEAH box helicase
AT01_2977	PF00271	Helicase conserved C-terminal domain
AT01_2977	PF03880	DbpA RNA binding domain
AT01_2977	PF12343	AT01_2977
AT01_2978	PF00296	Luciferase-like monooxygenase
AT01_298	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AT01_298	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AT01_2980	PF01136	AT01_2980
AT01_2981	PF01136	AT01_2981
AT01_2982	PF02036	SCP-2 sterol transfer family
AT01_2983	PF01541	GIY-YIG catalytic domain
AT01_2984	PF00583	Acetyltransferase (GNAT) family
AT01_2985	PF13520	Amino acid permease
AT01_2986	PF01276	Orn/Lys/Arg decarboxylase, major domain
AT01_2986	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AT01_2986	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AT01_2989	PF12706	Beta-lactamase superfamily domain
AT01_299	PF00877	NlpC/P60 family
AT01_2990	PF13238	AAA domain
AT01_2991	PF07969	Amidohydrolase family
AT01_2992	PF00005	ABC transporter
AT01_2993	PF00005	ABC transporter
AT01_2994	PF06007	AT01_2994
AT01_2995	PF05861	AT01_2995
AT01_2996	PF05845	Bacterial phosphonate metabolism protein (PhnH)
AT01_2997	PF06754	AT01_2997
AT01_2998	PF00392	Bacterial regulatory proteins, gntR family
AT01_2998	PF07702	UTRA domain
AT01_2999	PF13353	4Fe-4S single cluster domain
AT01_3	PF06836	AT01_3
AT01_30	PF05118	Aspartyl/Asparaginyl beta-hydroxylase
AT01_300	PF00462	Glutaredoxin
AT01_3000	PF03477	ATP cone domain
AT01_3000	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AT01_3001	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3001	PF03466	LysR substrate binding domain
AT01_3002	PF02525	Flavodoxin-like fold
AT01_3005	PF00005	ABC transporter
AT01_3006	PF00005	ABC transporter
AT01_3007	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3007	PF12911	AT01_3007
AT01_3008	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3009	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_301	PF00929	Exonuclease
AT01_3010	PF04074	Domain of unknown function (DUF386)
AT01_3011	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AT01_3011	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AT01_3012	PF06877	Regulator of ribonuclease activity B
AT01_3013	PF00583	Acetyltransferase (GNAT) family
AT01_3014	PF00133	tRNA synthetases class I (I, L, M and V)
AT01_3014	PF08264	Anticodon-binding domain of tRNA
AT01_3014	PF10458	Valyl tRNA synthetase tRNA binding arm
AT01_3015	PF04364	DNA polymerase III chi subunit, HolC
AT01_3016	PF00883	Cytosol aminopeptidase family, catalytic domain
AT01_3016	PF02789	Cytosol aminopeptidase family, N-terminal domain
AT01_3017	PF03739	AT01_3017
AT01_3018	PF03739	AT01_3018
AT01_302	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AT01_3021	PF04221	RelB antitoxin
AT01_3022	PF05016	Plasmid stabilisation system protein
AT01_3024	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AT01_3024	PF04851	Type III restriction enzyme, res subunit
AT01_3024	PF12008	Type I restriction and modification enzyme - subunit R C terminal
AT01_3025	PF01420	Type I restriction modification DNA specificity domain
AT01_3026	PF02384	N-6 DNA Methylase
AT01_3026	PF12161	HsdM N-terminal domain
AT01_3027	PF13332	AT01_3027
AT01_3028	PF15599	AT01_3028
AT01_3029	PF04829	AT01_3029
AT01_3029	PF05594	AT01_3029
AT01_3029	PF05860	haemagglutination activity domain
AT01_3029	PF13018	AT01_3029
AT01_3029	PF13332	AT01_3029
AT01_3029	PF14021	AT01_3029
AT01_303	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AT01_3030	PF03865	Haemolysin secretion/activation protein ShlB/FhaC/HecB
AT01_3030	PF08479	POTRA domain, ShlB-type
AT01_3030	PF17287	AT01_3030
AT01_3031	PF03212	Pertactin
AT01_3031	PF03797	Autotransporter beta-domain
AT01_3032	PF02525	Flavodoxin-like fold
AT01_3033	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3033	PF03466	LysR substrate binding domain
AT01_3034	PF00583	Acetyltransferase (GNAT) family
AT01_3035	PF00196	Bacterial regulatory proteins, luxR family
AT01_3036	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AT01_3037	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AT01_3038	PF13391	AT01_3038
AT01_3039	PF10696	AT01_3039
AT01_304	PF00440	Bacterial regulatory proteins, tetR family
AT01_304	PF16925	AT01_304
AT01_3040	PF04463	AT01_3040
AT01_3040	PF08349	AT01_3040
AT01_3041	PF03992	Antibiotic biosynthesis monooxygenase
AT01_3042	PF01791	DeoC/LacD family aldolase
AT01_3043	PF13407	Periplasmic binding protein domain
AT01_3044	PF02653	AT01_3044
AT01_3045	PF02653	AT01_3045
AT01_3046	PF00005	ABC transporter
AT01_3047	PF04198	Putative sugar-binding domain
AT01_3048	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_3048	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_3049	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AT01_305	PF00884	Sulfatase
AT01_305	PF08019	AT01_305
AT01_3050	PF04932	AT01_3050
AT01_3051	PF13520	Amino acid permease
AT01_3052	PF02274	Amidinotransferase
AT01_3053	PF06305	AT01_3053
AT01_3054	PF16576	AT01_3054
AT01_3055	PF00873	AcrB/AcrD/AcrF family
AT01_3056	PF07690	Major Facilitator Superfamily
AT01_3057	PF02543	Carbamoyltransferase
AT01_3057	PF16861	AT01_3057
AT01_3058	PF00881	Nitroreductase family
AT01_3059	PF00465	Iron-containing alcohol dehydrogenase
AT01_306	PF06945	AT01_306
AT01_3060	PF02733	Dak1 domain
AT01_3061	PF02734	DAK2 domain
AT01_3062	PF00381	PTS HPr component phosphorylation site
AT01_3062	PF00391	PEP-utilising enzyme, mobile domain
AT01_3062	PF03610	PTS system fructose IIA component
AT01_3062	PF05524	PEP-utilising enzyme, N-terminal
AT01_3063	PF00534	Glycosyl transferases group 1
AT01_3064	PF02543	Carbamoyltransferase
AT01_3064	PF16861	AT01_3064
AT01_3065	PF05199	GMC oxidoreductase
AT01_3066	PF00534	Glycosyl transferases group 1
AT01_3067	PF07690	Major Facilitator Superfamily
AT01_3068	PF10014	2OG-Fe dioxygenase
AT01_3069	PF00158	Sigma-54 interaction domain
AT01_3069	PF00989	PAS fold
AT01_3069	PF02954	Bacterial regulatory protein, Fis family
AT01_307	PF00248	Aldo/keto reductase family
AT01_3070	PF00356	Bacterial regulatory proteins, lacI family
AT01_3070	PF13377	Periplasmic binding protein-like domain
AT01_3071	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AT01_3071	PF08244	Glycosyl hydrolases family 32 C terminal
AT01_3072	PF00367	phosphotransferase system, EIIB
AT01_3072	PF02378	Phosphotransferase system, EIIC
AT01_3073	PF02264	LamB porin
AT01_3073	PF11471	AT01_3073
AT01_3074	PF00294	pfkB family carbohydrate kinase
AT01_3075	PF03497	Anthrax toxin LF subunit
AT01_3076	PF00990	GGDEF domain
AT01_3077	PF07256	AT01_3077
AT01_308	PF04632	AT01_308
AT01_3081	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3081	PF03466	LysR substrate binding domain
AT01_3082	PF00248	Aldo/keto reductase family
AT01_3083	PF05175	Methyltransferase small domain
AT01_3083	PF08468	Methyltransferase small domain N-terminal
AT01_3084	PF03603	DNA polymerase III psi subunit
AT01_3085	PF00583	Acetyltransferase (GNAT) family
AT01_3086	PF00009	Elongation factor Tu GTP binding domain
AT01_3086	PF03144	Elongation factor Tu domain 2
AT01_3086	PF16658	AT01_3086
AT01_3087	PF04972	BON domain
AT01_3088	PF07043	AT01_3088
AT01_3089	PF01734	Patatin-like phospholipase
AT01_309	PF13437	HlyD family secretion protein
AT01_309	PF13533	Biotin-lipoyl like
AT01_3090	PF01026	TatD related DNase
AT01_3091	PF01773	Na+ dependent nucleoside transporter N-terminus
AT01_3091	PF07662	Na+ dependent nucleoside transporter C-terminus
AT01_3091	PF07670	Nucleoside recognition
AT01_3092	PF01791	DeoC/LacD family aldolase
AT01_3093	PF00591	Glycosyl transferase family, a/b domain
AT01_3093	PF02885	Glycosyl transferase family, helical bundle domain
AT01_3093	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AT01_3094	PF01676	Metalloenzyme superfamily
AT01_3095	PF01048	Phosphorylase superfamily
AT01_3096	PF10144	AT01_3096
AT01_3097	PF12710	haloacid dehalogenase-like hydrolase
AT01_3098	PF13481	AAA domain
AT01_3098	PF13541	Subunit ChlI of Mg-chelatase
AT01_3099	PF01381	Helix-turn-helix
AT01_3099	PF13521	AAA domain
AT01_31	PF00083	Sugar (and other) transporter
AT01_310	PF07869	AT01_310
AT01_3100	PF05336	Domain of unknown function (DUF718)
AT01_3101	PF00465	Iron-containing alcohol dehydrogenase
AT01_3102	PF00596	Class II Aldolase and Adducin N-terminal domain
AT01_3103	PF06134	L-rhamnose isomerase (RhaA)
AT01_3104	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_3104	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_3105	PF02311	AraC-like ligand binding domain
AT01_3105	PF12833	Helix-turn-helix domain
AT01_3106	PF02311	AraC-like ligand binding domain
AT01_3106	PF12833	Helix-turn-helix domain
AT01_3107	PF06379	AT01_3107
AT01_3108	PF00005	ABC transporter
AT01_3108	PF12848	ABC transporter
AT01_3109	PF00122	E1-E2 ATPase
AT01_3109	PF00689	Cation transporting ATPase, C-terminus
AT01_3109	PF00690	Cation transporter/ATPase, N-terminus
AT01_3109	PF00702	haloacid dehalogenase-like hydrolase
AT01_311	PF01047	MarR family
AT01_3110	PF01464	Transglycosylase SLT domain
AT01_3110	PF14718	Soluble lytic murein transglycosylase L domain
AT01_3111	PF01371	Trp repressor protein
AT01_3112	PF01931	Protein of unknown function DUF84
AT01_3113	PF06445	GyrI-like small molecule binding domain
AT01_3113	PF12833	Helix-turn-helix domain
AT01_3114	PF00300	Histidine phosphatase superfamily (branch 1)
AT01_3115	PF05981	AT01_3115
AT01_3116	PF00072	Response regulator receiver domain
AT01_3116	PF00486	Transcriptional regulatory protein, C terminal
AT01_3117	PF00696	Amino acid kinase family
AT01_3117	PF00742	Homoserine dehydrogenase
AT01_3117	PF01842	ACT domain
AT01_3117	PF03447	Homoserine dehydrogenase, NAD binding domain
AT01_3117	PF13840	ACT domain
AT01_3118	PF00288	GHMP kinases N terminal domain
AT01_3118	PF08544	GHMP kinases C terminal
AT01_3119	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_3119	PF14821	Threonine synthase N terminus
AT01_312	PF05433	AT01_312
AT01_3120	PF03883	AT01_3120
AT01_3121	PF00923	Transaldolase
AT01_3122	PF00994	Probable molybdopterin binding domain
AT01_3123	PF07690	Major Facilitator Superfamily
AT01_3124	PF01184	AT01_3124
AT01_3125	PF00012	Hsp70 protein
AT01_3126	PF00226	DnaJ domain
AT01_3126	PF00684	DnaJ central domain
AT01_3126	PF01556	DnaJ C terminal domain
AT01_3127	PF06965	Na+/H+ antiporter 1
AT01_3128	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3128	PF03466	LysR substrate binding domain
AT01_3129	PF01649	Ribosomal protein S20
AT01_313	PF03702	Uncharacterised protein family (UPF0075)
AT01_3130	PF01687	Riboflavin kinase
AT01_3130	PF06574	FAD synthetase
AT01_3131	PF00133	tRNA synthetases class I (I, L, M and V)
AT01_3131	PF06827	Zinc finger found in FPG and IleRS
AT01_3131	PF08264	Anticodon-binding domain of tRNA
AT01_3132	PF01252	AT01_3132
AT01_3133	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AT01_3134	PF02401	LytB protein
AT01_3135	PF01113	Dihydrodipicolinate reductase, N-terminus
AT01_3135	PF05173	Dihydrodipicolinate reductase, C-terminus
AT01_3136	PF00117	Glutamine amidotransferase class-I
AT01_3136	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AT01_3137	PF02142	MGS-like domain
AT01_3137	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AT01_3137	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AT01_3138	PF01810	AT01_3138
AT01_3139	PF06738	AT01_3139
AT01_314	PF09864	Membrane-bound lysozyme-inhibitor of c-type lysozyme
AT01_3140	PF12821	AT01_3140
AT01_3141	PF00186	Dihydrofolate reductase
AT01_3142	PF00149	Calcineurin-like phosphoesterase
AT01_3143	PF04379	Protein of unknown function (DUF525)
AT01_3144	PF00398	Ribosomal RNA adenine dimethylase
AT01_3145	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AT01_3146	PF00639	PPIC-type PPIASE domain
AT01_3146	PF09312	SurA N-terminal domain
AT01_3147	PF03968	OstA-like protein
AT01_3147	PF04453	Organic solvent tolerance protein
AT01_3148	PF00226	DnaJ domain
AT01_3148	PF05099	Tellurite resistance protein TerB
AT01_3149	PF00849	RNA pseudouridylate synthase
AT01_315	PF01243	Pyridoxamine 5'-phosphate oxidase
AT01_315	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AT01_3152	PF15538	AT01_3152
AT01_3155	PF02369	Bacterial Ig-like domain (group 1)
AT01_3155	PF09134	Invasin, domain 3
AT01_3155	PF11924	Protein of unknown function (DUF3442)
AT01_3156	PF01979	Amidohydrolase family
AT01_3157	PF17090	AT01_3157
AT01_3158	PF13437	HlyD family secretion protein
AT01_3158	PF13533	Biotin-lipoyl like
AT01_3159	PF04632	AT01_3159
AT01_316	PF00579	tRNA synthetases class I (W and Y)
AT01_316	PF01479	S4 domain
AT01_3160	PF02321	Outer membrane efflux protein
AT01_3161	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3161	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3161	PF08521	AT01_3161
AT01_3162	PF00072	Response regulator receiver domain
AT01_3162	PF00486	Transcriptional regulatory protein, C terminal
AT01_3163	PF03401	Tripartite tricarboxylate transporter family receptor
AT01_3164	PF07331	AT01_3164
AT01_3165	PF01970	AT01_3165
AT01_3166	PF00176	SNF2 family N-terminal domain
AT01_3166	PF00271	Helicase conserved C-terminal domain
AT01_3166	PF12137	RNA polymerase recycling family C-terminal
AT01_3167	PF00136	DNA polymerase family B
AT01_3167	PF03104	DNA polymerase family B, exonuclease domain
AT01_3169	PF09335	AT01_3169
AT01_3170	PF00005	ABC transporter
AT01_3171	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3172	PF13343	Bacterial extracellular solute-binding protein
AT01_3173	PF13988	AT01_3173
AT01_3175	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_3175	PF12793	AT01_3175
AT01_3176	PF04055	Radical SAM superfamily
AT01_3176	PF13353	4Fe-4S single cluster domain
AT01_3179	PF07690	Major Facilitator Superfamily
AT01_318	PF08543	Phosphomethylpyrimidine kinase
AT01_3180	PF00694	Aconitase C-terminal domain
AT01_3181	PF00330	Aconitase family (aconitate hydratase)
AT01_3182	PF00180	Isocitrate/isopropylmalate dehydrogenase
AT01_3183	PF00682	HMGL-like
AT01_3183	PF08502	LeuA allosteric (dimerisation) domain
AT01_3184	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3184	PF03466	LysR substrate binding domain
AT01_3185	PF00501	AMP-binding enzyme
AT01_3186	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_3186	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_3186	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_3187	PF01842	ACT domain
AT01_3187	PF10369	Small subunit of acetolactate synthase
AT01_3188	PF00356	Bacterial regulatory proteins, lacI family
AT01_3188	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_3189	PF06610	AT01_3189
AT01_319	PF00043	Glutathione S-transferase, C-terminal domain
AT01_319	PF02798	Glutathione S-transferase, N-terminal domain
AT01_3190	PF02381	MraZ protein
AT01_3191	PF01795	MraW methylase family
AT01_3192	PF04999	AT01_3192
AT01_3193	PF00905	Penicillin binding protein transpeptidase domain
AT01_3193	PF03717	Penicillin-binding Protein dimerisation domain
AT01_3194	PF01225	Mur ligase family, catalytic domain
AT01_3194	PF02875	Mur ligase family, glutamate ligase domain
AT01_3194	PF08245	Mur ligase middle domain
AT01_3195	PF01225	Mur ligase family, catalytic domain
AT01_3195	PF02875	Mur ligase family, glutamate ligase domain
AT01_3195	PF08245	Mur ligase middle domain
AT01_3196	PF00953	Glycosyl transferase family 4
AT01_3196	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AT01_3197	PF02875	Mur ligase family, glutamate ligase domain
AT01_3197	PF08245	Mur ligase middle domain
AT01_3198	PF01098	AT01_3198
AT01_3199	PF03033	Glycosyltransferase family 28 N-terminal domain
AT01_3199	PF04101	Glycosyltransferase family 28 C-terminal domain
AT01_32	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AT01_320	PF11656	AT01_320
AT01_3200	PF01225	Mur ligase family, catalytic domain
AT01_3200	PF02875	Mur ligase family, glutamate ligase domain
AT01_3200	PF08245	Mur ligase middle domain
AT01_3201	PF01820	D-ala D-ala ligase N-terminus
AT01_3201	PF07478	D-ala D-ala ligase C-terminus
AT01_3202	PF03799	Cell division protein FtsQ
AT01_3202	PF08478	POTRA domain, FtsQ-type
AT01_3203	PF02491	SHS2 domain inserted in FTSA
AT01_3203	PF14450	Cell division protein FtsA
AT01_3204	PF00091	Tubulin/FtsZ family, GTPase domain
AT01_3204	PF12327	FtsZ family, C-terminal domain
AT01_3205	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AT01_3206	PF05258	AT01_3206
AT01_3207	PF06558	AT01_3207
AT01_3208	PF01043	SecA preprotein cross-linking domain
AT01_3208	PF02810	SEC-C motif
AT01_3208	PF07516	SecA Wing and Scaffold domain
AT01_3208	PF07517	SecA DEAD-like domain
AT01_3209	PF00293	NUDIX domain
AT01_321	PF06930	AT01_321
AT01_3210	PF03884	Domain of unknown function (DUF329)
AT01_3211	PF07072	Protein of unknown function (DUF1342)
AT01_3212	PF01121	Dephospho-CoA kinase
AT01_3213	PF00478	IMP dehydrogenase / GMP reductase domain
AT01_3214	PF00482	Type II secretion system (T2SS), protein F
AT01_3215	PF00437	Type II/IV secretion system protein
AT01_3216	PF00114	Pilin (bacterial filament)
AT01_3216	PF07963	Prokaryotic N-terminal methylation motif
AT01_3217	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AT01_3217	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AT01_3218	PF01510	N-acetylmuramoyl-L-alanine amidase
AT01_3219	PF17113	AT01_3219
AT01_322	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AT01_3220	PF01476	LysM domain
AT01_3220	PF02369	Bacterial Ig-like domain (group 1)
AT01_3220	PF09134	Invasin, domain 3
AT01_3220	PF11924	Protein of unknown function (DUF3442)
AT01_3221	PF04616	Glycosyl hydrolases family 43
AT01_3222	PF13347	MFS/sugar transport protein
AT01_3223	PF00324	Amino acid permease
AT01_3224	PF00392	Bacterial regulatory proteins, gntR family
AT01_3224	PF07729	FCD domain
AT01_3225	PF00456	Transketolase, thiamine diphosphate binding domain
AT01_3226	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AT01_3226	PF00364	Biotin-requiring enzyme
AT01_3226	PF02817	e3 binding domain
AT01_3227	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AT01_3227	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_3228	PF03496	ADP-ribosyltransferase exoenzyme
AT01_3229	PF12833	Helix-turn-helix domain
AT01_323	PF00854	POT family
AT01_3230	PF00593	TonB dependent receptor
AT01_3230	PF07715	TonB-dependent Receptor Plug Domain
AT01_3231	PF00330	Aconitase family (aconitate hydratase)
AT01_3231	PF06434	Aconitate hydratase 2 N-terminus
AT01_3231	PF11791	Aconitate B N-terminal domain
AT01_3232	PF06062	AT01_3232
AT01_3233	PF00892	EamA-like transporter family
AT01_3234	PF02675	S-adenosylmethionine decarboxylase
AT01_3235	PF01564	Spermine/spermidine synthase
AT01_3235	PF17284	AT01_3235
AT01_3236	PF09691	Bacterial chaperone lipoprotein (PulS_OutS)
AT01_3237	PF00394	Multicopper oxidase
AT01_3237	PF07731	Multicopper oxidase
AT01_3237	PF07732	Multicopper oxidase
AT01_3237	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AT01_3239	PF00156	Phosphoribosyl transferase domain
AT01_3240	PF00484	Carbonic anhydrase
AT01_3241	PF00005	ABC transporter
AT01_3242	PF01061	AT01_3242
AT01_3243	PF01522	Polysaccharide deacetylase
AT01_3244	PF02261	Aspartate decarboxylase
AT01_3245	PF02569	Pantoate-beta-alanine ligase
AT01_3246	PF02548	Ketopantoate hydroxymethyltransferase
AT01_3247	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AT01_3248	PF01743	Poly A polymerase head domain
AT01_3248	PF12626	Polymerase A arginine-rich C-terminus
AT01_3248	PF12627	Probable RNA and SrmB- binding site of polymerase A
AT01_325	PF00005	ABC transporter
AT01_3250	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AT01_3251	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AT01_3252	PF03749	Sugar fermentation stimulation protein
AT01_3253	PF02834	LigT like Phosphoesterase
AT01_3254	PF00270	DEAD/DEAH box helicase
AT01_3254	PF00271	Helicase conserved C-terminal domain
AT01_3254	PF04408	Helicase associated domain (HA2)
AT01_3254	PF08482	AT01_3254
AT01_3255	PF00905	Penicillin binding protein transpeptidase domain
AT01_3255	PF00912	Transglycosylase
AT01_3255	PF14812	AT01_3255
AT01_3255	PF14814	Bifunctional transglycosylase second domain
AT01_3256	PF00005	ABC transporter
AT01_3257	PF01497	Periplasmic binding protein
AT01_3258	PF01032	FecCD transport family
AT01_3259	PF07690	Major Facilitator Superfamily
AT01_326	PF00005	ABC transporter
AT01_326	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_3260	PF00202	Aminotransferase class-III
AT01_3261	PF00654	Voltage gated chloride channel
AT01_3262	PF01521	Iron-sulphur cluster biosynthesis
AT01_3263	PF03458	AT01_3263
AT01_3264	PF01497	Periplasmic binding protein
AT01_3265	PF01048	Phosphorylase superfamily
AT01_3266	PF01966	HD domain
AT01_3266	PF13286	Phosphohydrolase-associated domain
AT01_3267	PF00595	PDZ domain (Also known as DHR or GLGF)
AT01_3267	PF13180	PDZ domain
AT01_3267	PF13365	Trypsin-like peptidase domain
AT01_3268	PF00072	Response regulator receiver domain
AT01_3268	PF01627	Hpt domain
AT01_3269	PF01548	AT01_3269
AT01_3269	PF02371	AT01_3269
AT01_327	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_327	PF12911	AT01_327
AT01_3270	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3270	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3270	PF09984	AT01_3270
AT01_3271	PF01938	TRAM domain
AT01_3271	PF05958	tRNA (Uracil-5-)-methyltransferase
AT01_3272	PF02824	TGS domain
AT01_3272	PF04607	Region found in RelA / SpoT proteins
AT01_3272	PF13291	ACT domain
AT01_3272	PF13328	HD domain
AT01_3273	PF03819	MazG nucleotide pyrophosphohydrolase domain
AT01_3274	PF00117	Glutamine amidotransferase class-I
AT01_3274	PF06418	CTP synthase N-terminus
AT01_3275	PF00113	Enolase, C-terminal TIM barrel domain
AT01_3275	PF03952	Enolase, N-terminal domain
AT01_3277	PF00080	Copper/zinc superoxide dismutase (SODC)
AT01_3278	PF04055	Radical SAM superfamily
AT01_3278	PF13394	4Fe-4S single cluster domain
AT01_3279	PF01242	6-pyruvoyl tetrahydropterin synthase
AT01_328	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3280	PF00175	Oxidoreductase NAD-binding domain
AT01_3280	PF00258	Flavodoxin
AT01_3280	PF00667	FAD binding domain
AT01_3281	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AT01_3281	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AT01_3282	PF01507	Phosphoadenosine phosphosulfate reductase family
AT01_3283	PF15919	AT01_3283
AT01_3284	PF07927	YcfA-like protein
AT01_3285	PF04389	Peptidase family M28
AT01_3286	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_3286	PF10414	Sirohaem synthase dimerisation region
AT01_3286	PF13241	Putative NAD(P)-binding
AT01_3286	PF14824	Sirohaem biosynthesis protein central
AT01_3287	PF01507	Phosphoadenosine phosphosulfate reductase family
AT01_3288	PF00009	Elongation factor Tu GTP binding domain
AT01_3289	PF01583	Adenylylsulphate kinase
AT01_329	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_3290	PF12084	AT01_3290
AT01_3291	PF00005	ABC transporter
AT01_3292	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3293	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3294	PF04977	Septum formation initiator
AT01_3295	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AT01_3296	PF02542	YgbB family
AT01_3297	PF01142	tRNA pseudouridine synthase D (TruD)
AT01_3298	PF01975	Survival protein SurE
AT01_3299	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AT01_330	PF02917	Pertussis toxin, subunit 1
AT01_3300	PF01476	LysM domain
AT01_3300	PF01551	Peptidase family M23
AT01_3301	PF00140	Sigma-70 factor, region 1
AT01_3301	PF04539	Sigma-70 region 3
AT01_3301	PF04542	Sigma-70 region 2
AT01_3301	PF04545	Sigma-70, region 4
AT01_3302	PF00488	MutS domain V
AT01_3302	PF01624	MutS domain I
AT01_3302	PF05188	MutS domain II
AT01_3302	PF05190	MutS family domain IV
AT01_3302	PF05192	MutS domain III
AT01_3304	PF04932	AT01_3304
AT01_3304	PF11846	AT01_3304
AT01_3304	PF15864	AT01_3304
AT01_3305	PF04703	FaeA-like protein
AT01_3306	PF00419	Fimbrial protein
AT01_3309	PF00577	Outer membrane usher protein
AT01_3309	PF13953	PapC C-terminal domain
AT01_3309	PF13954	PapC N-terminal domain
AT01_3310	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_3310	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_3311	PF00419	Fimbrial protein
AT01_3312	PF00419	Fimbrial protein
AT01_3313	PF00419	Fimbrial protein
AT01_3315	PF15959	AT01_3315
AT01_3318	PF00005	ABC transporter
AT01_3318	PF00664	ABC transporter transmembrane region
AT01_3318	PF03412	Peptidase C39 family
AT01_3319	PF16576	AT01_3319
AT01_332	PF00158	Sigma-54 interaction domain
AT01_332	PF02954	Bacterial regulatory protein, Fis family
AT01_3320	PF00005	ABC transporter
AT01_3320	PF02687	AT01_3320
AT01_3320	PF12704	MacB-like periplasmic core domain
AT01_3321	PF02321	Outer membrane efflux protein
AT01_3322	PF00109	Beta-ketoacyl synthase, N-terminal domain
AT01_3322	PF02801	Beta-ketoacyl synthase, C-terminal domain
AT01_3323	PF01575	MaoC like domain
AT01_3324	PF00550	Phosphopantetheine attachment site
AT01_3325	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_3326	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3327	PF00155	Aminotransferase class I and II
AT01_3328	PF03212	Pertactin
AT01_3328	PF03797	Autotransporter beta-domain
AT01_3329	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_333	PF04012	AT01_333
AT01_3330	PF00009	Elongation factor Tu GTP binding domain
AT01_3330	PF00679	Elongation factor G C-terminus
AT01_3330	PF03144	Elongation factor Tu domain 2
AT01_3330	PF03764	Elongation factor G, domain IV
AT01_3330	PF14492	Elongation Factor G, domain II
AT01_3331	PF12840	Helix-turn-helix domain
AT01_3332	PF05681	AT01_3332
AT01_3332	PF05683	Fumarase C-terminus
AT01_3333	PF00455	AT01_3333
AT01_3333	PF08220	DeoR-like helix-turn-helix domain
AT01_3334	PF05025	RbsD / FucU transport protein family
AT01_3335	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AT01_3335	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_3336	PF02952	L-fucose isomerase, C-terminal domain
AT01_3336	PF07881	L-fucose isomerase, first N-terminal domain
AT01_3336	PF07882	L-fucose isomerase, second N-terminal domain
AT01_3337	PF07690	Major Facilitator Superfamily
AT01_3338	PF00596	Class II Aldolase and Adducin N-terminal domain
AT01_3339	PF00465	Iron-containing alcohol dehydrogenase
AT01_334	PF06667	AT01_334
AT01_3340	PF00384	Molybdopterin oxidoreductase
AT01_3340	PF01568	Molydopterin dinucleotide binding domain
AT01_3340	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AT01_3341	PF12800	4Fe-4S binding domain
AT01_3341	PF13247	4Fe-4S dicluster domain
AT01_3342	PF04976	AT01_3342
AT01_3343	PF02613	Nitrate reductase delta subunit
AT01_3346	PF07690	Major Facilitator Superfamily
AT01_3347	PF02464	Competence-damaged protein
AT01_3348	PF00154	recA bacterial DNA recombination protein
AT01_3349	PF02631	RecX family
AT01_335	PF04024	AT01_335
AT01_3350	PF01411	tRNA synthetases class II (A)
AT01_3350	PF02272	DHHA1 domain
AT01_3350	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AT01_3351	PF02599	Global regulator protein family
AT01_3356	PF13419	Haloacid dehalogenase-like hydrolase
AT01_3357	PF09335	AT01_3357
AT01_3358	PF04262	Glutamate-cysteine ligase
AT01_3359	PF02664	S-Ribosylhomocysteinase (LuxS)
AT01_336	PF09584	AT01_336
AT01_3360	PF01595	AT01_3360
AT01_3360	PF03471	Transporter associated domain
AT01_3361	PF01578	AT01_3361
AT01_3362	PF00448	SRP54-type protein, GTPase domain
AT01_3362	PF02881	SRP54-type protein, helical bundle domain
AT01_3362	PF02978	Signal peptide binding domain
AT01_3363	PF00886	Ribosomal protein S16
AT01_3364	PF01782	RimM N-terminal domain
AT01_3364	PF05239	PRC-barrel domain
AT01_3365	PF01746	tRNA (Guanine-1)-methyltransferase
AT01_3366	PF01245	Ribosomal protein L19
AT01_3367	PF04338	Protein of unknown function, DUF481
AT01_3368	PF03605	AT01_3368
AT01_3369	PF00072	Response regulator receiver domain
AT01_3369	PF04397	LytTr DNA-binding domain
AT01_337	PF04317	AT01_337
AT01_3370	PF00793	DAHP synthetase I family
AT01_3371	PF01817	Chorismate mutase type II
AT01_3371	PF02153	Prephenate dehydrogenase
AT01_3372	PF00800	Prephenate dehydratase
AT01_3372	PF01817	Chorismate mutase type II
AT01_3373	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AT01_3374	PF13525	Outer membrane lipoprotein
AT01_3375	PF00849	RNA pseudouridylate synthase
AT01_3375	PF01479	S4 domain
AT01_3376	PF02578	Multi-copper polyphenol oxidoreductase laccase
AT01_3377	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_3377	PF02861	Clp amino terminal domain
AT01_3377	PF07724	AAA domain (Cdc48 subfamily)
AT01_3377	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_338	PF05128	AT01_338
AT01_3383	PF00891	O-methyltransferase
AT01_3385	PF13723	AT01_3385
AT01_3386	PF01553	Acyltransferase
AT01_3387	PF00550	Phosphopantetheine attachment site
AT01_3388	PF00550	Phosphopantetheine attachment site
AT01_339	PF08808	AT01_339
AT01_3390	PF00501	AMP-binding enzyme
AT01_3391	PF07977	FabA-like domain
AT01_3392	PF00535	Glycosyl transferase family 2
AT01_3393	PF13279	Thioesterase-like superfamily
AT01_3394	PF03548	Outer membrane lipoprotein carrier protein LolA
AT01_3395	PF03176	MMPL family
AT01_3396	PF11659	AT01_3396
AT01_3397	PF00109	Beta-ketoacyl synthase, N-terminal domain
AT01_3397	PF02801	Beta-ketoacyl synthase, C-terminal domain
AT01_3399	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_34	PF06167	Glucose-regulated metallo-peptidase M90
AT01_340	PF09722	AT01_340
AT01_3400	PF00109	Beta-ketoacyl synthase, N-terminal domain
AT01_3400	PF02801	Beta-ketoacyl synthase, C-terminal domain
AT01_3401	PF03372	Endonuclease/Exonuclease/phosphatase family
AT01_3402	PF03797	Autotransporter beta-domain
AT01_3402	PF13018	AT01_3402
AT01_3404	PF01464	Transglycosylase SLT domain
AT01_3404	PF01476	LysM domain
AT01_3405	PF00753	Metallo-beta-lactamase superfamily
AT01_3405	PF16123	AT01_3405
AT01_3406	PF08241	Methyltransferase domain
AT01_3407	PF00075	RNase H
AT01_3408	PF00929	Exonuclease
AT01_341	PF00158	Sigma-54 interaction domain
AT01_341	PF00989	PAS fold
AT01_3410	PF00593	TonB dependent receptor
AT01_3411	PF04954	Siderophore-interacting protein
AT01_3412	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AT01_3413	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3414	PF00005	ABC transporter
AT01_3414	PF00571	CBS domain
AT01_3415	PF00268	Ribonucleotide reductase, small chain
AT01_3416	PF00317	Ribonucleotide reductase, all-alpha domain
AT01_3416	PF02867	Ribonucleotide reductase, barrel domain
AT01_3416	PF08343	Ribonucleotide reductase N-terminal
AT01_3417	PF07972	NrdI Flavodoxin like
AT01_3418	PF00462	Glutaredoxin
AT01_3419	PF05957	AT01_3419
AT01_342	PF08534	Redoxin
AT01_3421	PF03403	Platelet-activating factor acetylhydrolase, isoform II
AT01_3422	PF12833	Helix-turn-helix domain
AT01_3423	PF07690	Major Facilitator Superfamily
AT01_3424	PF09400	Protein of unknown function (DUF2002)
AT01_3425	PF06711	AT01_3425
AT01_3426	PF04899	AT01_3426
AT01_3427	PF00313	'Cold-shock' DNA-binding domain
AT01_3429	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_343	PF00246	Zinc carboxypeptidase
AT01_3430	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3431	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3432	PF00005	ABC transporter
AT01_3433	PF00005	ABC transporter
AT01_3434	PF00547	Urease, gamma subunit
AT01_3435	PF00699	Urease beta subunit
AT01_3436	PF00449	Urease alpha-subunit, N-terminal domain
AT01_3436	PF01979	Amidohydrolase family
AT01_3437	PF02814	UreE urease accessory protein, N-terminal domain
AT01_3437	PF05194	UreE urease accessory protein, C-terminal domain
AT01_3438	PF01730	UreF
AT01_3439	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AT01_344	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AT01_344	PF13378	Enolase C-terminal domain-like
AT01_3440	PF01774	UreD urease accessory protein
AT01_3441	PF03253	Urea transporter
AT01_3442	PF03824	AT01_3442
AT01_3443	PF06411	HdeA/HdeB family
AT01_3444	PF02254	TrkA-N domain
AT01_3444	PF07885	Ion channel
AT01_3445	PF02537	AT01_3445
AT01_3446	PF02537	AT01_3446
AT01_3447	PF07995	Glucose / Sorbosone dehydrogenase
AT01_3448	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AT01_3449	PF02378	Phosphotransferase system, EIIC
AT01_345	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_3450	PF00232	Glycosyl hydrolase family 1
AT01_3451	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AT01_3452	PF07883	Cupin domain
AT01_3452	PF12833	Helix-turn-helix domain
AT01_3453	PF04794	YdjC-like protein
AT01_3455	PF00144	Beta-lactamase
AT01_3456	PF03288	Poxvirus D5 protein-like
AT01_3456	PF08273	Zinc-binding domain of primase-helicase
AT01_3456	PF08706	AT01_3456
AT01_3456	PF13362	Toprim domain
AT01_3457	PF17345	AT01_3457
AT01_3459	PF10554	AT01_3459
AT01_3461	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AT01_3463	PF04606	AT01_3463
AT01_3464	PF13175	AAA ATPase domain
AT01_3465	PF00580	UvrD/REP helicase N-terminal domain
AT01_3465	PF13361	UvrD-like helicase C-terminal domain
AT01_3466	PF00589	Phage integrase family
AT01_3466	PF13356	Domain of unknown function (DUF4102)
AT01_3467	PF01668	SmpB protein
AT01_3468	PF03364	Polyketide cyclase / dehydrase and lipid transport
AT01_3469	PF03658	RnfH family Ubiquitin
AT01_347	PF01544	CorA-like Mg2+ transporter protein
AT01_3470	PF04355	SmpA / OmlA family
AT01_3471	PF02463	RecF/RecN/SMC N terminal domain
AT01_3472	PF01513	ATP-NAD kinase
AT01_3473	PF01025	GrpE
AT01_3474	PF03167	Uracil DNA glycosylase superfamily
AT01_3475	PF01228	Glycine radical
AT01_3479	PF11187	Protein of unknown function (DUF2974)
AT01_348	PF01171	PP-loop family
AT01_3480	PF12796	Ankyrin repeats (3 copies)
AT01_3481	PF00270	DEAD/DEAH box helicase
AT01_3481	PF00271	Helicase conserved C-terminal domain
AT01_3482	PF05175	Methyltransferase small domain
AT01_3483	PF00890	FAD binding domain
AT01_3483	PF02910	Fumarate reductase flavoprotein C-term
AT01_3484	PF04542	Sigma-70 region 2
AT01_3484	PF08281	Sigma-70, region 4
AT01_3485	PF03872	Anti sigma-E protein RseA, N-terminal domain
AT01_3485	PF03873	Anti sigma-E protein RseA, C-terminal domain
AT01_3486	PF03888	MucB/RseB family
AT01_3486	PF17188	AT01_3486
AT01_3487	PF04246	AT01_3487
AT01_349	PF00388	Phosphatidylinositol-specific phospholipase C, X domain
AT01_3490	PF00009	Elongation factor Tu GTP binding domain
AT01_3490	PF00679	Elongation factor G C-terminus
AT01_3490	PF03144	Elongation factor Tu domain 2
AT01_3490	PF06421	GTP-binding protein LepA C-terminus
AT01_3491	PF00717	Peptidase S24-like
AT01_3491	PF10502	Signal peptidase, peptidase S26
AT01_3492	PF00035	Double-stranded RNA binding motif
AT01_3492	PF14622	Ribonuclease-III-like
AT01_3493	PF01926	50S ribosome-binding GTPase
AT01_3493	PF07650	KH domain
AT01_3494	PF02565	Recombination protein O C terminal
AT01_3494	PF11967	Recombination protein O N terminal
AT01_3495	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AT01_3496	PF01648	4'-phosphopantetheinyl transferase superfamily
AT01_3497	PF12838	4Fe-4S dicluster domain
AT01_3498	PF01380	SIS domain
AT01_3498	PF01418	Helix-turn-helix domain, rpiR family
AT01_3499	PF01380	SIS domain
AT01_35	PF06551	AT01_35
AT01_350	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
AT01_350	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
AT01_350	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_350	PF10371	Domain of unknown function
AT01_350	PF12838	4Fe-4S dicluster domain
AT01_350	PF17147	AT01_350
AT01_3500	PF00367	phosphotransferase system, EIIB
AT01_3500	PF02378	Phosphotransferase system, EIIC
AT01_3501	PF12710	haloacid dehalogenase-like hydrolase
AT01_3503	PF14437	AT01_3503
AT01_3504	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3504	PF01464	Transglycosylase SLT domain
AT01_3505	PF02769	AIR synthase related protein, C-terminal domain
AT01_3505	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AT01_3506	PF00294	pfkB family carbohydrate kinase
AT01_3509	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3509	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_351	PF00893	Small Multidrug Resistance protein
AT01_3510	PF13942	AT01_3510
AT01_3511	PF00072	Response regulator receiver domain
AT01_3511	PF00158	Sigma-54 interaction domain
AT01_3512	PF00795	Carbon-nitrogen hydrolase
AT01_3512	PF02540	NAD synthase
AT01_3513	PF00543	Nitrogen regulatory protein P-II
AT01_3514	PF10797	AT01_3514
AT01_3515	PF10941	AT01_3515
AT01_3516	PF02126	Phosphotriesterase family
AT01_3519	PF14502	Helix-turn-helix domain
AT01_3519	PF14503	YhfZ C-terminal domain
AT01_352	PF02308	AT01_352
AT01_3520	PF00042	Globin
AT01_3520	PF00175	Oxidoreductase NAD-binding domain
AT01_3520	PF00970	Oxidoreductase FAD-binding domain
AT01_3521	PF00464	Serine hydroxymethyltransferase
AT01_3522	PF00874	PRD domain
AT01_3523	PF12832	MFS_1 like family
AT01_3524	PF06226	AT01_3524
AT01_3525	PF03824	AT01_3525
AT01_3526	PF00459	Inositol monophosphatase family
AT01_3527	PF00588	SpoU rRNA Methylase family
AT01_3528	PF02082	Transcriptional regulator
AT01_3529	PF00266	Aminotransferase class-V
AT01_353	PF03891	AT01_353
AT01_3530	PF01592	NifU-like N terminal domain
AT01_3531	PF01521	Iron-sulphur cluster biosynthesis
AT01_3532	PF00226	DnaJ domain
AT01_3532	PF07743	HSCB C-terminal oligomerisation domain
AT01_3533	PF00012	Hsp70 protein
AT01_3534	PF00111	2Fe-2S iron-sulfur cluster binding domain
AT01_3535	PF04384	Iron-sulphur cluster assembly
AT01_3536	PF00883	Cytosol aminopeptidase family, catalytic domain
AT01_3536	PF12404	AT01_3536
AT01_3537	PF07179	AT01_3537
AT01_3537	PF14581	AT01_3537
AT01_3538	PF00207	Alpha-2-macroglobulin family
AT01_3538	PF01835	MG2 domain
AT01_3538	PF07703	Alpha-2-macroglobulin family N-terminal region
AT01_3538	PF10569	Alpha-macro-globulin thiol-ester bond-forming region
AT01_3538	PF11974	Alpha-2-macroglobulin MG1 domain
AT01_3539	PF00905	Penicillin binding protein transpeptidase domain
AT01_3539	PF00912	Transglycosylase
AT01_3539	PF06832	AT01_3539
AT01_354	PF03724	META domain
AT01_3540	PF00030	Beta/Gamma crystallin
AT01_3540	PF09101	Exotoxin A binding
AT01_3541	PF00334	Nucleoside diphosphate kinase
AT01_3542	PF04055	Radical SAM superfamily
AT01_3543	PF13181	Tetratricopeptide repeat
AT01_3544	PF13413	Helix-turn-helix domain
AT01_3544	PF13464	AT01_3544
AT01_3545	PF04551	GcpE protein
AT01_3546	PF03129	Anticodon binding domain
AT01_3546	PF13393	Histidyl-tRNA synthetase
AT01_3547	PF09976	Tetratricopeptide repeat
AT01_3548	PF13360	PQQ-like domain
AT01_3549	PF01926	50S ribosome-binding GTPase
AT01_3549	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AT01_355	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AT01_355	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AT01_3550	PF03547	AT01_3550
AT01_3551	PF07191	zinc-ribbons
AT01_3552	PF02601	AT01_3552
AT01_3552	PF13742	AT01_3552
AT01_3553	PF00478	IMP dehydrogenase / GMP reductase domain
AT01_3553	PF00571	CBS domain
AT01_3554	PF00117	Glutamine amidotransferase class-I
AT01_3554	PF00958	GMP synthase C terminal domain
AT01_3554	PF02540	NAD synthase
AT01_3556	PF12318	AT01_3556
AT01_3557	PF05199	GMC oxidoreductase
AT01_3557	PF13450	NAD(P)-binding Rossmann-like domain
AT01_3558	PF00034	Cytochrome c
AT01_3558	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AT01_3559	PF13673	Acetyltransferase (GNAT) domain
AT01_356	PF11739	AT01_356
AT01_3560	PF08543	Phosphomethylpyrimidine kinase
AT01_3562	PF08816	Inhibitor of vertebrate lysozyme (Ivy)
AT01_3563	PF00571	CBS domain
AT01_3563	PF01380	SIS domain
AT01_3564	PF00455	AT01_3564
AT01_3564	PF08220	DeoR-like helix-turn-helix domain
AT01_3565	PF06923	AT01_3565
AT01_3566	PF00106	short chain dehydrogenase
AT01_3567	PF03829	PTS system glucitol/sorbitol-specific IIA component
AT01_3568	PF03612	AT01_3568
AT01_3568	PF07663	AT01_3568
AT01_3569	PF03608	AT01_3569
AT01_357	PF13617	AT01_357
AT01_3570	PF00781	Diacylglycerol kinase catalytic domain
AT01_3571	PF01136	AT01_3571
AT01_3571	PF16325	AT01_3571
AT01_3572	PF07411	Domain of unknown function (DUF1508)
AT01_3573	PF00072	Response regulator receiver domain
AT01_3573	PF00486	Transcriptional regulatory protein, C terminal
AT01_3574	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3574	PF00672	HAMP domain
AT01_3574	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3575	PF00873	AcrB/AcrD/AcrF family
AT01_3576	PF00873	AcrB/AcrD/AcrF family
AT01_3577	PF13437	HlyD family secretion protein
AT01_3577	PF13533	Biotin-lipoyl like
AT01_3578	PF00419	Fimbrial protein
AT01_3579	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_358	PF07027	AT01_358
AT01_3580	PF00419	Fimbrial protein
AT01_3581	PF00577	Outer membrane usher protein
AT01_3581	PF13953	PapC C-terminal domain
AT01_3581	PF13954	PapC N-terminal domain
AT01_3582	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_3582	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_3584	PF00012	Hsp70 protein
AT01_3585	PF00563	EAL domain
AT01_3585	PF00990	GGDEF domain
AT01_3585	PF05231	AT01_3585
AT01_3585	PF08447	PAS fold
AT01_3585	PF08448	PAS fold
AT01_3586	PF00571	CBS domain
AT01_3586	PF01769	Divalent cation transporter
AT01_3586	PF03448	MgtE intracellular N domain
AT01_3587	PF11119	AT01_3587
AT01_3588	PF02541	Ppx/GppA phosphatase family
AT01_3589	PF02503	Polyphosphate kinase middle domain
AT01_3589	PF13089	Polyphosphate kinase N-terminal domain
AT01_3589	PF13090	Polyphosphate kinase C-terminal domain
AT01_359	PF02525	Flavodoxin-like fold
AT01_3590	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3591	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3592	PF00005	ABC transporter
AT01_3593	PF13302	Acetyltransferase (GNAT) domain
AT01_3594	PF00551	Formyl transferase
AT01_3595	PF00586	AIR synthase related protein, N-terminal domain
AT01_3595	PF02769	AIR synthase related protein, C-terminal domain
AT01_3596	PF14681	Uracil phosphoribosyltransferase
AT01_3597	PF00860	Permease family
AT01_3598	PF00308	Bacterial dnaA  protein
AT01_3599	PF03960	ArsC family
AT01_36	PF06551	AT01_36
AT01_360	PF00270	DEAD/DEAH box helicase
AT01_360	PF00271	Helicase conserved C-terminal domain
AT01_360	PF04408	Helicase associated domain (HA2)
AT01_360	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AT01_360	PF11898	AT01_360
AT01_3600	PF01435	Peptidase family M48
AT01_3600	PF14559	Tetratricopeptide repeat
AT01_3601	PF01594	AT01_3601
AT01_3602	PF00578	AhpC/TSA family
AT01_3603	PF13740	ACT domain
AT01_3604	PF00701	Dihydrodipicolinate synthetase family
AT01_3605	PF06804	NlpB/DapX lipoprotein
AT01_3606	PF01259	SAICAR synthetase
AT01_3607	PF04228	AT01_3607
AT01_3608	PF04284	AT01_3608
AT01_3609	PF05127	Helicase
AT01_3609	PF08351	Domain of unknown function (DUF1726)
AT01_3609	PF13718	GNAT acetyltransferase 2
AT01_3609	PF17176	AT01_3609
AT01_361	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AT01_361	PF08388	AT01_361
AT01_361	PF13655	AT01_361
AT01_3610	PF13980	AT01_3610
AT01_3611	PF02557	D-alanyl-D-alanine carboxypeptidase
AT01_3612	PF01546	Peptidase family M20/M25/M40
AT01_3612	PF07687	Peptidase dimerisation domain
AT01_3613	PF03960	ArsC family
AT01_3614	PF12688	Tetratrico peptide repeat
AT01_3615	PF00873	AcrB/AcrD/AcrF family
AT01_3616	PF09904	Winged helix-turn helix
AT01_3617	PF00072	Response regulator receiver domain
AT01_3617	PF00196	Bacterial regulatory proteins, luxR family
AT01_3618	PF12838	4Fe-4S dicluster domain
AT01_3618	PF13187	4Fe-4S dicluster domain
AT01_3619	PF03927	NapD protein
AT01_362	PF01526	AT01_362
AT01_362	PF13700	AT01_362
AT01_3620	PF00384	Molybdopterin oxidoreductase
AT01_3620	PF01568	Molydopterin dinucleotide binding domain
AT01_3620	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AT01_3620	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AT01_3621	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AT01_3622	PF03264	NapC/NirT cytochrome c family, N-terminal region
AT01_3623	PF00293	NUDIX domain
AT01_3624	PF00390	Malic enzyme, N-terminal domain
AT01_3624	PF01515	Phosphate acetyl/butaryl transferase
AT01_3624	PF03949	Malic enzyme, NAD binding domain
AT01_3625	PF02639	AT01_3625
AT01_3626	PF01218	Coproporphyrinogen III oxidase
AT01_3627	PF00583	Acetyltransferase (GNAT) family
AT01_3628	PF04076	Bacterial OB fold (BOF) protein
AT01_3629	PF06572	Protein of unknown function (DUF1131)
AT01_3630	PF04261	Dyp-type peroxidase family
AT01_3631	PF13531	Bacterial extracellular solute-binding protein
AT01_3632	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3633	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3634	PF00005	ABC transporter
AT01_3635	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_3637	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3637	PF00672	HAMP domain
AT01_3637	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3638	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AT01_3639	PF00391	PEP-utilising enzyme, mobile domain
AT01_3639	PF02896	PEP-utilising enzyme, TIM barrel domain
AT01_3639	PF05524	PEP-utilising enzyme, N-terminal
AT01_364	PF00239	Resolvase, N terminal domain
AT01_3640	PF00381	PTS HPr component phosphorylation site
AT01_3641	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_3642	PF07264	Etoposide-induced protein 2
AT01_3643	PF04354	ZipA, C-terminal FtsZ-binding domain
AT01_3644	PF00533	BRCA1 C Terminus (BRCT) domain
AT01_3644	PF01653	NAD-dependent DNA ligase adenylation domain
AT01_3644	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AT01_3644	PF03120	NAD-dependent DNA ligase OB-fold domain
AT01_3644	PF12826	Helix-hairpin-helix motif
AT01_3644	PF14520	Helix-hairpin-helix domain
AT01_3645	PF12843	AT01_3645
AT01_3646	PF14282	AT01_3646
AT01_3647	PF06042	Bacterial protein of unknown function (DUF925)
AT01_365	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AT01_3650	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AT01_3655	PF01773	Na+ dependent nucleoside transporter N-terminus
AT01_3655	PF07662	Na+ dependent nucleoside transporter C-terminus
AT01_3655	PF07670	Nucleoside recognition
AT01_3656	PF01566	AT01_3656
AT01_3657	PF10697	AT01_3657
AT01_3658	PF00248	Aldo/keto reductase family
AT01_3659	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_3659	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_3659	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_366	PF01548	AT01_366
AT01_366	PF02371	AT01_366
AT01_3660	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3660	PF03466	LysR substrate binding domain
AT01_3661	PF05232	AT01_3661
AT01_3662	PF02685	Glucokinase
AT01_3663	PF07690	Major Facilitator Superfamily
AT01_3664	PF00072	Response regulator receiver domain
AT01_3664	PF04397	LytTr DNA-binding domain
AT01_3665	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3665	PF06580	AT01_3665
AT01_3665	PF07694	5TMR of 5TMR-LYT
AT01_3666	PF07350	Protein of unknown function (DUF1479)
AT01_3667	PF13302	Acetyltransferase (GNAT) domain
AT01_3668	PF00155	Aminotransferase class I and II
AT01_3669	PF01292	Prokaryotic cytochrome b561
AT01_367	PF13678	NFkB-p65-degrading zinc protease
AT01_3670	PF15970	AT01_3670
AT01_3671	PF03783	Curli production assembly/transport component CsgG
AT01_3672	PF16068	AT01_3672
AT01_3673	PF05643	Putative bacterial lipoprotein (DUF799)
AT01_3674	PF09900	AT01_3674
AT01_3675	PF00005	ABC transporter
AT01_3676	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3677	PF13343	Bacterial extracellular solute-binding protein
AT01_3678	PF13406	Transglycosylase SLT domain
AT01_3679	PF00324	Amino acid permease
AT01_368	PF00877	NlpC/P60 family
AT01_368	PF12912	NLPC_P60 stabilising domain, N term
AT01_368	PF12913	SH3 domain of the SH3b1 type
AT01_368	PF12914	SH3 domain of SH3b2 type
AT01_3680	PF07969	Amidohydrolase family
AT01_3681	PF00440	Bacterial regulatory proteins, tetR family
AT01_3681	PF13977	Bacterial transcriptional repressor
AT01_3682	PF07690	Major Facilitator Superfamily
AT01_3683	PF02405	AT01_3683
AT01_3684	PF00005	ABC transporter
AT01_3685	PF02470	AT01_3685
AT01_3686	PF03886	Protein of unknown function (DUF330)
AT01_3687	PF03313	AT01_3687
AT01_3688	PF01053	Cys/Met metabolism PLP-dependent enzyme
AT01_3689	PF03553	AT01_3689
AT01_369	PF13610	AT01_369
AT01_3690	PF01292	Prokaryotic cytochrome b561
AT01_3691	PF04264	YceI-like domain
AT01_3692	PF12977	Domain of Unknown Function with PDB structure (DUF3861)
AT01_3693	PF03551	Transcriptional regulator PadR-like family
AT01_3695	PF01103	Surface antigen
AT01_3696	PF13265	AT01_3696
AT01_3697	PF04391	AT01_3697
AT01_3698	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AT01_3699	PF06048	AT01_3699
AT01_37	PF00577	Outer membrane usher protein
AT01_37	PF13953	PapC C-terminal domain
AT01_37	PF13954	PapC N-terminal domain
AT01_370	PF00574	Clp protease
AT01_3700	PF04606	AT01_3700
AT01_3701	PF13276	AT01_3701
AT01_3701	PF13683	AT01_3701
AT01_3703	PF01527	Transposase
AT01_3704	PF01527	Transposase
AT01_3707	PF08007	Cupin superfamily protein
AT01_3708	PF15941	AT01_3708
AT01_3709	PF00486	Transcriptional regulatory protein, C terminal
AT01_371	PF04986	AT01_371
AT01_3711	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_3711	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_3712	PF00577	Outer membrane usher protein
AT01_3712	PF13953	PapC C-terminal domain
AT01_3712	PF13954	PapC N-terminal domain
AT01_3713	PF00419	Fimbrial protein
AT01_3714	PF00196	Bacterial regulatory proteins, luxR family
AT01_3715	PF00196	Bacterial regulatory proteins, luxR family
AT01_3718	PF00005	ABC transporter
AT01_3718	PF00664	ABC transporter transmembrane region
AT01_3719	PF03992	Antibiotic biosynthesis monooxygenase
AT01_372	PF00665	Integrase core domain
AT01_3720	PF00196	Bacterial regulatory proteins, luxR family
AT01_3721	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3722	PF00149	Calcineurin-like phosphoesterase
AT01_3725	PF00196	Bacterial regulatory proteins, luxR family
AT01_3726	PF00313	'Cold-shock' DNA-binding domain
AT01_3727	PF00313	'Cold-shock' DNA-binding domain
AT01_3728	PF02537	AT01_3728
AT01_3729	PF00990	GGDEF domain
AT01_3729	PF05230	AT01_3729
AT01_373	PF13936	Helix-turn-helix domain
AT01_3730	PF02416	mttA/Hcf106 family
AT01_3731	PF04055	Radical SAM superfamily
AT01_3731	PF16881	AT01_3731
AT01_3732	PF03099	Biotin/lipoate A/B protein ligase family
AT01_3733	PF04359	Protein of unknown function (DUF493)
AT01_3734	PF00768	D-alanyl-D-alanine carboxypeptidase
AT01_3734	PF07943	Penicillin-binding protein 5, C-terminal domain
AT01_3735	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AT01_3735	PF05036	Sporulation related domain
AT01_3736	PF01098	AT01_3736
AT01_3737	PF00905	Penicillin binding protein transpeptidase domain
AT01_3737	PF03717	Penicillin-binding Protein dimerisation domain
AT01_3738	PF02590	Predicted SPOUT methyltransferase
AT01_3739	PF02410	Oligomerisation domain
AT01_3740	PF01467	Cytidylyltransferase
AT01_3741	PF06144	DNA polymerase III, delta subunit
AT01_3741	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AT01_3742	PF04390	Lipopolysaccharide-assembly
AT01_3743	PF00133	tRNA synthetases class I (I, L, M and V)
AT01_3743	PF08264	Anticodon-binding domain of tRNA
AT01_3743	PF13603	Leucyl-tRNA synthetase, Domain 2
AT01_3744	PF07295	AT01_3744
AT01_3745	PF00005	ABC transporter
AT01_3746	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3747	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3748	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3749	PF01243	Pyridoxamine 5'-phosphate oxidase
AT01_3750	PF00795	Carbon-nitrogen hydrolase
AT01_3751	PF00571	CBS domain
AT01_3751	PF03471	Transporter associated domain
AT01_3752	PF02130	Uncharacterized protein family UPF0054
AT01_3753	PF02562	PhoH-like protein
AT01_3754	PF00919	Uncharacterized protein family UPF0004
AT01_3754	PF01938	TRAM domain
AT01_3754	PF04055	Radical SAM superfamily
AT01_3755	PF01494	FAD binding domain
AT01_376	PF03988	AT01_376
AT01_3762	PF00733	Asparagine synthase
AT01_3762	PF13537	Glutamine amidotransferase domain
AT01_3763	PF13242	HAD-hyrolase-like
AT01_3763	PF13344	Haloacid dehalogenase-like hydrolase
AT01_3764	PF00480	ROK family
AT01_3764	PF01047	MarR family
AT01_3765	PF01979	Amidohydrolase family
AT01_3766	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AT01_3767	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AT01_3767	PF00367	phosphotransferase system, EIIB
AT01_3767	PF02378	Phosphotransferase system, EIIC
AT01_3768	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AT01_3768	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AT01_3769	PF03573	outer membrane porin, OprD family
AT01_377	PF06767	Sif protein
AT01_3770	PF13982	AT01_3770
AT01_3771	PF00728	Glycosyl hydrolase family 20, catalytic domain
AT01_3771	PF02838	Glycosyl hydrolase family 20, domain 2
AT01_3771	PF03173	Putative carbohydrate binding domain
AT01_3771	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AT01_3772	PF01475	Ferric uptake regulator family
AT01_3773	PF00258	Flavodoxin
AT01_3775	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_3775	PF02203	Tar ligand binding domain homologue
AT01_3776	PF01402	Ribbon-helix-helix protein, copG family
AT01_3778	PF12697	Alpha/beta hydrolase family
AT01_3779	PF03925	SeqA protein
AT01_3779	PF17206	AT01_3779
AT01_3780	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AT01_3780	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AT01_3780	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AT01_3780	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AT01_3781	PF00892	EamA-like transporter family
AT01_3782	PF00072	Response regulator receiver domain
AT01_3782	PF00486	Transcriptional regulatory protein, C terminal
AT01_3783	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3783	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3783	PF02702	Osmosensitive K+ channel His kinase sensor domain
AT01_3783	PF13492	GAF domain
AT01_3783	PF13493	Domain of unknown function (DUF4118)
AT01_3784	PF02669	AT01_3784
AT01_3785	PF00122	E1-E2 ATPase
AT01_3785	PF00702	haloacid dehalogenase-like hydrolase
AT01_3786	PF03814	AT01_3786
AT01_3787	PF10725	AT01_3787
AT01_3788	PF08349	AT01_3788
AT01_3789	PF00875	DNA photolyase
AT01_3789	PF03441	FAD binding domain of DNA photolyase
AT01_379	PF01526	AT01_379
AT01_3790	PF02112	AT01_3790
AT01_3791	PF01784	NIF3 (NGG1p interacting factor 3)
AT01_3792	PF02682	Allophanate hydrolase subunit 1
AT01_3793	PF02626	Allophanate hydrolase subunit 2
AT01_3794	PF03746	LamB/YcsF family
AT01_3795	PF06149	AT01_3795
AT01_3796	PF06166	AT01_3796
AT01_3797	PF01470	Pyroglutamyl peptidase
AT01_3798	PF00285	Citrate synthase
AT01_3799	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AT01_38	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_380	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AT01_380	PF08388	AT01_380
AT01_380	PF13655	AT01_380
AT01_3801	PF00890	FAD binding domain
AT01_3801	PF02910	Fumarate reductase flavoprotein C-term
AT01_3802	PF13085	2Fe-2S iron-sulfur cluster binding domain
AT01_3802	PF13534	4Fe-4S dicluster domain
AT01_3803	PF00676	Dehydrogenase E1 component
AT01_3803	PF02779	Transketolase, pyrimidine binding domain
AT01_3803	PF16078	AT01_3803
AT01_3803	PF16870	AT01_3803
AT01_3804	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AT01_3804	PF00364	Biotin-requiring enzyme
AT01_3804	PF02817	e3 binding domain
AT01_3805	PF00549	CoA-ligase
AT01_3805	PF08442	ATP-grasp domain
AT01_3806	PF00549	CoA-ligase
AT01_3806	PF02629	CoA binding domain
AT01_3807	PF00149	Calcineurin-like phosphoesterase
AT01_3807	PF02872	5'-nucleotidase, C-terminal domain
AT01_3808	PF01654	AT01_3808
AT01_3809	PF02322	AT01_3809
AT01_381	PF05973	AT01_381
AT01_3810	PF08173	AT01_3810
AT01_3811	PF09600	AT01_3811
AT01_3812	PF03061	Thioesterase superfamily
AT01_3813	PF01618	AT01_3813
AT01_3814	PF02472	Biopolymer transport protein ExbD/TolR
AT01_3815	PF06519	TolA C-terminal
AT01_3816	PF04052	TolB amino-terminal domain
AT01_3816	PF07676	WD40-like Beta Propeller Repeat
AT01_3817	PF00691	OmpA family
AT01_3818	PF13174	Tetratricopeptide repeat
AT01_3818	PF13432	Tetratricopeptide repeat
AT01_3818	PF16331	AT01_3818
AT01_382	PF01381	Helix-turn-helix
AT01_3823	PF02445	Quinolinate synthetase A protein
AT01_3824	PF04973	AT01_3824
AT01_3825	PF01545	Cation efflux family
AT01_3826	PF00072	Response regulator receiver domain
AT01_3826	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3826	PF00512	His Kinase A (phospho-acceptor) domain
AT01_3826	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3827	PF00072	Response regulator receiver domain
AT01_3827	PF00196	Bacterial regulatory proteins, luxR family
AT01_3828	PF00793	DAHP synthetase I family
AT01_3829	PF00300	Histidine phosphatase superfamily (branch 1)
AT01_383	PF00089	Trypsin
AT01_3830	PF07769	AT01_3830
AT01_3831	PF01263	Aldose 1-epimerase
AT01_3832	PF00288	GHMP kinases N terminal domain
AT01_3832	PF08544	GHMP kinases C terminal
AT01_3832	PF10509	Galactokinase galactose-binding signature
AT01_3833	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
AT01_3833	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
AT01_3834	PF16363	AT01_3834
AT01_3835	PF02517	CAAX protease self-immunity
AT01_3836	PF00005	ABC transporter
AT01_3837	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3837	PF03459	TOBE domain
AT01_3838	PF10766	Protein of unknown function (DUF2592)
AT01_3839	PF13531	Bacterial extracellular solute-binding protein
AT01_3840	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3841	PF00005	ABC transporter
AT01_3841	PF03459	TOBE domain
AT01_3842	PF08282	haloacid dehalogenase-like hydrolase
AT01_3843	PF10282	Lactonase, 7-bladed beta-propeller
AT01_3844	PF00202	Aminotransferase class-III
AT01_3845	PF04055	Radical SAM superfamily
AT01_3845	PF06968	Biotin and Thiamin Synthesis associated domain
AT01_3846	PF00155	Aminotransferase class I and II
AT01_3847	PF08241	Methyltransferase domain
AT01_3848	PF13500	AAA domain
AT01_3849	PF00005	ABC transporter
AT01_385	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AT01_3851	PF00271	Helicase conserved C-terminal domain
AT01_3851	PF02151	UvrB/uvrC motif
AT01_3851	PF04851	Type III restriction enzyme, res subunit
AT01_3851	PF12344	Ultra-violet resistance protein B
AT01_3852	PF09905	Uncharacterized conserved protein (DUF2132)
AT01_3853	PF00593	TonB dependent receptor
AT01_3853	PF07715	TonB-dependent Receptor Plug Domain
AT01_3854	PF01497	Periplasmic binding protein
AT01_3855	PF01032	FecCD transport family
AT01_3856	PF00005	ABC transporter
AT01_3857	PF01933	Uncharacterised protein family UPF0052
AT01_3858	PF04055	Radical SAM superfamily
AT01_3858	PF06463	Molybdenum Cofactor Synthesis C
AT01_3858	PF13353	4Fe-4S single cluster domain
AT01_3859	PF01967	MoaC family
AT01_386	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_3860	PF02597	ThiS family
AT01_3861	PF02391	MoaE protein
AT01_3862	PF01027	Inhibitor of apoptosis-promoting Bax1
AT01_3863	PF12698	ABC-2 family transporter protein
AT01_3864	PF12698	ABC-2 family transporter protein
AT01_3865	PF00005	ABC transporter
AT01_3866	PF16576	AT01_3866
AT01_3867	PF00440	Bacterial regulatory proteins, tetR family
AT01_3867	PF09209	Domain of unknown function (DUF1956)
AT01_3868	PF00270	DEAD/DEAH box helicase
AT01_3868	PF00271	Helicase conserved C-terminal domain
AT01_3869	PF01207	Dihydrouridine synthase (Dus)
AT01_387	PF00072	Response regulator receiver domain
AT01_387	PF00486	Transcriptional regulatory protein, C terminal
AT01_3873	PF00768	D-alanyl-D-alanine carboxypeptidase
AT01_3874	PF01565	FAD binding domain
AT01_3874	PF09330	D-lactate dehydrogenase, membrane binding
AT01_3875	PF01844	HNH endonuclease
AT01_3876	PF05076	Suppressor of fused protein (SUFU)
AT01_3877	PF04226	AT01_3877
AT01_3878	PF00005	ABC transporter
AT01_3879	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AT01_3880	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3881	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3882	PF07308	AT01_3882
AT01_3883	PF00581	Rhodanese-like domain
AT01_3885	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AT01_3885	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AT01_3886	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AT01_3888	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3889	PF00005	ABC transporter
AT01_389	PF13520	Amino acid permease
AT01_3890	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3891	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AT01_3893	PF00892	EamA-like transporter family
AT01_3894	PF00267	Gram-negative porin
AT01_3895	PF06733	DEAD_2
AT01_3895	PF13307	Helicase C-terminal domain
AT01_3896	PF00230	Major intrinsic protein
AT01_3897	PF00591	Glycosyl transferase family, a/b domain
AT01_3897	PF02885	Glycosyl transferase family, helical bundle domain
AT01_3898	PF05971	Protein of unknown function (DUF890)
AT01_3899	PF00005	ABC transporter
AT01_39	PF00455	AT01_39
AT01_39	PF08220	DeoR-like helix-turn-helix domain
AT01_390	PF07338	Protein of unknown function (DUF1471)
AT01_3900	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_3901	PF00497	Bacterial extracellular solute-binding proteins, family 3
AT01_3902	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AT01_3903	PF00210	Ferritin-like domain
AT01_3905	PF00583	Acetyltransferase (GNAT) family
AT01_3906	PF00892	EamA-like transporter family
AT01_3907	PF13505	Outer membrane protein beta-barrel domain
AT01_391	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AT01_391	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AT01_391	PF12769	Domain of unknown function (DUF3814)
AT01_3910	PF12697	Alpha/beta hydrolase family
AT01_3911	PF01545	Cation efflux family
AT01_3912	PF01321	Creatinase/Prolidase N-terminal domain
AT01_3914	PF00005	ABC transporter
AT01_3914	PF12848	ABC transporter
AT01_3915	PF13402	Peptidase M60-like family
AT01_3916	PF00872	AT01_3916
AT01_3917	PF00899	ThiF family
AT01_3918	PF00994	Probable molybdopterin binding domain
AT01_3918	PF03453	MoeA N-terminal region (domain I and II)
AT01_3918	PF03454	MoeA C-terminal region (domain IV)
AT01_3919	PF06041	Bacterial protein of unknown function (DUF924)
AT01_392	PF02233	NAD(P) transhydrogenase beta subunit
AT01_3920	PF07690	Major Facilitator Superfamily
AT01_3922	PF00005	ABC transporter
AT01_3923	PF13437	HlyD family secretion protein
AT01_3925	PF13276	AT01_3925
AT01_3925	PF13683	AT01_3925
AT01_3926	PF01527	Transposase
AT01_3929	PF00756	Putative esterase
AT01_393	PF00582	Universal stress protein family
AT01_3930	PF00107	Zinc-binding dehydrogenase
AT01_3930	PF08240	Alcohol dehydrogenase GroES-like domain
AT01_3931	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_3931	PF03466	LysR substrate binding domain
AT01_3932	PF06779	AT01_3932
AT01_3933	PF01227	GTP cyclohydrolase I
AT01_3934	PF04235	AT01_3934
AT01_3935	PF00356	Bacterial regulatory proteins, lacI family
AT01_3935	PF13377	Periplasmic binding protein-like domain
AT01_3936	PF13407	Periplasmic binding protein domain
AT01_3937	PF00005	ABC transporter
AT01_3938	PF02653	AT01_3938
AT01_3939	PF00158	Sigma-54 interaction domain
AT01_3939	PF01590	GAF domain
AT01_394	PF00027	Cyclic nucleotide-binding domain
AT01_394	PF13545	Crp-like helix-turn-helix domain
AT01_3940	PF00384	Molybdopterin oxidoreductase
AT01_3940	PF01568	Molydopterin dinucleotide binding domain
AT01_3940	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AT01_3941	PF12800	4Fe-4S binding domain
AT01_3941	PF13247	4Fe-4S dicluster domain
AT01_3942	PF01750	Hydrogenase maturation protease
AT01_3943	PF07450	AT01_3943
AT01_3944	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
AT01_3945	PF12838	4Fe-4S dicluster domain
AT01_3946	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
AT01_3946	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
AT01_3946	PF00374	Nickel-dependent hydrogenase
AT01_3947	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_3947	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AT01_3948	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AT01_3949	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_3949	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AT01_395	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AT01_395	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AT01_3950	PF00146	NADH dehydrogenase
AT01_3951	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AT01_3952	PF00037	4Fe-4S binding domain
AT01_3952	PF12798	4Fe-4S binding domain
AT01_3953	PF01155	Hydrogenase expression/synthesis hypA family
AT01_3954	PF01455	HupF/HypC family
AT01_3955	PF02698	DUF218 domain
AT01_3956	PF00390	Malic enzyme, N-terminal domain
AT01_3956	PF03949	Malic enzyme, NAD binding domain
AT01_3957	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AT01_3957	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AT01_3958	PF04172	AT01_3958
AT01_3959	PF03788	AT01_3959
AT01_396	PF04463	AT01_396
AT01_3960	PF07690	Major Facilitator Superfamily
AT01_3961	PF08309	AT01_3961
AT01_3962	PF13407	Periplasmic binding protein domain
AT01_3964	PF01588	Putative tRNA binding domain
AT01_3964	PF09334	tRNA synthetases class I (M)
AT01_3965	PF10609	ParA/MinD ATPase like
AT01_3966	PF00485	Phosphoribulokinase / Uridine kinase family
AT01_3967	PF00692	dUTPase
AT01_3968	PF05170	AT01_3968
AT01_3969	PF03606	AT01_3969
AT01_397	PF06445	GyrI-like small molecule binding domain
AT01_3970	PF00571	CBS domain
AT01_3970	PF03471	Transporter associated domain
AT01_3970	PF03741	AT01_3970
AT01_3971	PF00483	Nucleotidyl transferase
AT01_3971	PF01050	Mannose-6-phosphate isomerase
AT01_3972	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AT01_3972	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AT01_3972	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AT01_3973	PF01061	AT01_3973
AT01_3974	PF00005	ABC transporter
AT01_3974	PF14524	Wzt C-terminal domain
AT01_3975	PF00534	Glycosyl transferases group 1
AT01_3977	PF05050	Methyltransferase FkbM domain
AT01_3978	PF00483	Nucleotidyl transferase
AT01_398	PF00245	Alkaline phosphatase
AT01_3980	PF13419	Haloacid dehalogenase-like hydrolase
AT01_3981	PF00483	Nucleotidyl transferase
AT01_3983	PF16363	AT01_3983
AT01_3984	PF16363	AT01_3984
AT01_3985	PF00534	Glycosyl transferases group 1
AT01_3986	PF00534	Glycosyl transferases group 1
AT01_3986	PF13439	Glycosyltransferase Family 4
AT01_3987	PF00483	Nucleotidyl transferase
AT01_3988	PF00483	Nucleotidyl transferase
AT01_3989	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AT01_3989	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AT01_399	PF13208	AT01_399
AT01_399	PF15615	AT01_399
AT01_3990	PF01502	Phosphoribosyl-AMP cyclohydrolase
AT01_3990	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AT01_3991	PF00977	Histidine biosynthesis protein
AT01_3992	PF00977	Histidine biosynthesis protein
AT01_3993	PF00117	Glutamine amidotransferase class-I
AT01_3994	PF00475	Imidazoleglycerol-phosphate dehydratase
AT01_3994	PF13242	HAD-hyrolase-like
AT01_3995	PF00155	Aminotransferase class I and II
AT01_3996	PF00815	Histidinol dehydrogenase
AT01_3997	PF01634	ATP phosphoribosyltransferase
AT01_3997	PF08029	HisG, C-terminal domain
AT01_3998	PF01370	NAD dependent epimerase/dehydratase family
AT01_3999	PF02653	AT01_3999
AT01_40	PF00294	pfkB family carbohydrate kinase
AT01_400	PF13419	Haloacid dehalogenase-like hydrolase
AT01_4000	PF00005	ABC transporter
AT01_4001	PF00465	Iron-containing alcohol dehydrogenase
AT01_4003	PF13520	Amino acid permease
AT01_4004	PF00929	Exonuclease
AT01_4004	PF08411	Exonuclease C-terminal
AT01_4005	PF07993	Male sterility protein
AT01_4006	PF13515	AT01_4006
AT01_4007	PF04363	AT01_4007
AT01_4008	PF02653	AT01_4008
AT01_4009	PF02653	AT01_4009
AT01_4010	PF00005	ABC transporter
AT01_4011	PF13407	Periplasmic binding protein domain
AT01_4013	PF00288	GHMP kinases N terminal domain
AT01_4014	PF00155	Aminotransferase class I and II
AT01_4015	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_4016	PF00871	Acetokinase family
AT01_4017	PF10662	Ethanolamine utilisation - propanediol utilisation
AT01_4018	PF00936	BMC domain
AT01_4019	PF00936	BMC domain
AT01_402	PF13710	ACT domain
AT01_4020	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AT01_4020	PF10531	SLBB domain
AT01_4020	PF13375	RnfC Barrel sandwich hybrid domain
AT01_4020	PF13534	4Fe-4S dicluster domain
AT01_4021	PF00465	Iron-containing alcohol dehydrogenase
AT01_4022	PF00171	Aldehyde dehydrogenase family
AT01_4023	PF01923	Cobalamin adenosyltransferase
AT01_4023	PF03928	Domain of unknown function (DUF336)
AT01_4024	PF03319	Ethanolamine utilisation protein EutN/carboxysome
AT01_4025	PF15953	AT01_4025
AT01_4026	PF06130	AT01_4026
AT01_4027	PF00936	BMC domain
AT01_4028	PF00936	BMC domain
AT01_4029	PF02288	Dehydratase medium subunit
AT01_403	PF00205	Thiamine pyrophosphate enzyme, central domain
AT01_403	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AT01_403	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AT01_4030	PF08841	Diol dehydratase reactivase ATPase-like domain
AT01_4032	PF02287	Dehydratase small subunit
AT01_4033	PF02288	Dehydratase medium subunit
AT01_4034	PF02286	Dehydratase large subunit
AT01_4035	PF00936	BMC domain
AT01_4036	PF00936	BMC domain
AT01_4038	PF00230	Major intrinsic protein
AT01_4039	PF10114	AT01_4039
AT01_4039	PF12833	Helix-turn-helix domain
AT01_404	PF07313	Protein of unknown function (DUF1460)
AT01_4040	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AT01_4040	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AT01_4041	PF03186	AT01_4041
AT01_4042	PF02570	Precorrin-8X methylmutase
AT01_4043	PF01888	CbiD
AT01_4044	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_4045	PF13847	Methyltransferase domain
AT01_4046	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_4047	PF01890	Cobalamin synthesis G C-terminus
AT01_4047	PF11760	Cobalamin synthesis G N-terminal
AT01_4047	PF11761	AT01_4047
AT01_4048	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_4049	PF02571	AT01_4049
AT01_405	PF10139	AT01_405
AT01_4050	PF06180	Cobalt chelatase (CbiK)
AT01_4051	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AT01_4052	PF01891	Cobalt uptake substrate-specific transmembrane region
AT01_4053	PF02553	AT01_4053
AT01_4054	PF02361	Cobalt transport protein
AT01_4055	PF00005	ABC transporter
AT01_4056	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AT01_4056	PF13500	AAA domain
AT01_4057	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AT01_4058	PF02654	AT01_4058
AT01_4059	PF00300	Histidine phosphatase superfamily (branch 1)
AT01_406	PF07520	AT01_406
AT01_4060	PF02277	Phosphoribosyltransferase
AT01_4061	PF03825	AT01_4061
AT01_4062	PF00196	Bacterial regulatory proteins, luxR family
AT01_4063	PF08786	Domain of unknown function (DUF1795)
AT01_4064	PF00691	OmpA family
AT01_4066	PF11397	AT01_4066
AT01_4067	PF00419	Fimbrial protein
AT01_4068	PF06812	AT01_4068
AT01_4069	PF06996	AT01_4069
AT01_4070	PF05947	AT01_4070
AT01_4071	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_4071	PF07724	AAA domain (Cdc48 subfamily)
AT01_4071	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_4072	PF16970	AT01_4072
AT01_4073	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_4073	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_4074	PF00577	Outer membrane usher protein
AT01_4074	PF13953	PapC C-terminal domain
AT01_4074	PF13954	PapC N-terminal domain
AT01_4075	PF00419	Fimbrial protein
AT01_4076	PF05591	AT01_4076
AT01_4077	PF05943	AT01_4077
AT01_4078	PF05638	Protein of unknown function (DUF796)
AT01_4079	PF12790	Type VI secretion lipoprotein
AT01_4080	PF05936	AT01_4080
AT01_4081	PF00691	OmpA family
AT01_4081	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AT01_4082	PF06744	AT01_4082
AT01_4082	PF06761	AT01_4082
AT01_4082	PF14331	AT01_4082
AT01_4083	PF05954	Phage late control gene D protein (GPD)
AT01_4085	PF07024	ImpE protein
AT01_4086	PF04965	Gene 25-like lysozyme
AT01_4087	PF00764	Arginosuccinate synthase
AT01_4088	PF01554	MatE
AT01_409	PF01048	Phosphorylase superfamily
AT01_409	PF10423	Bacterial AMP nucleoside phosphorylase N-terminus
AT01_41	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AT01_41	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AT01_410	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_410	PF03466	LysR substrate binding domain
AT01_411	PF00196	Bacterial regulatory proteins, luxR family
AT01_412	PF03212	Pertactin
AT01_412	PF03797	Autotransporter beta-domain
AT01_413	PF00145	C-5 cytosine-specific DNA methylase
AT01_414	PF03852	DNA mismatch endonuclease Vsr
AT01_415	PF09019	EcoRII C terminal
AT01_415	PF09217	Restriction endonuclease EcoRII, N-terminal
AT01_417	PF02369	Bacterial Ig-like domain (group 1)
AT01_417	PF11924	Protein of unknown function (DUF3442)
AT01_418	PF00043	Glutathione S-transferase, C-terminal domain
AT01_418	PF02798	Glutathione S-transferase, N-terminal domain
AT01_419	PF13449	Esterase-like activity of phytase
AT01_42	PF01116	Fructose-bisphosphate aldolase class-II
AT01_422	PF00194	Eukaryotic-type carbonic anhydrase
AT01_423	PF07338	Protein of unknown function (DUF1471)
AT01_425	PF00106	short chain dehydrogenase
AT01_426	PF00196	Bacterial regulatory proteins, luxR family
AT01_426	PF08448	PAS fold
AT01_427	PF02694	AT01_427
AT01_428	PF06932	AT01_428
AT01_429	PF06649	AT01_429
AT01_43	PF01263	Aldose 1-epimerase
AT01_430	PF00654	Voltage gated chloride channel
AT01_431	PF13500	AAA domain
AT01_432	PF00480	ROK family
AT01_433	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_433	PF03466	LysR substrate binding domain
AT01_434	PF07690	Major Facilitator Superfamily
AT01_435	PF13396	AT01_435
AT01_437	PF05472	DNA replication terminus site-binding protein (Ter protein)
AT01_438	PF00206	Lyase
AT01_438	PF10415	Fumarase C C-terminus
AT01_439	PF01238	Phosphomannose isomerase type I
AT01_44	PF02610	L-arabinose isomerase
AT01_44	PF02952	L-fucose isomerase, C-terminal domain
AT01_440	PF06097	AT01_440
AT01_442	PF00356	Bacterial regulatory proteins, lacI family
AT01_442	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_443	PF00367	phosphotransferase system, EIIB
AT01_443	PF02378	Phosphotransferase system, EIIC
AT01_444	PF00155	Aminotransferase class I and II
AT01_445	PF00962	Adenosine/AMP deaminase
AT01_446	PF13593	SBF-like CPA transporter family (DUF4137)
AT01_447	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AT01_447	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AT01_448	PF02311	AraC-like ligand binding domain
AT01_448	PF12833	Helix-turn-helix domain
AT01_449	PF02653	AT01_449
AT01_45	PF01055	Glycosyl hydrolases family 31
AT01_450	PF00005	ABC transporter
AT01_451	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_452	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AT01_453	PF02610	L-arabinose isomerase
AT01_453	PF11762	L-arabinose isomerase C-terminal domain
AT01_454	PF00232	Glycosyl hydrolase family 1
AT01_455	PF00005	ABC transporter
AT01_455	PF00664	ABC transporter transmembrane region
AT01_455	PF03412	Peptidase C39 family
AT01_456	PF13437	HlyD family secretion protein
AT01_456	PF13533	Biotin-lipoyl like
AT01_457	PF00005	ABC transporter
AT01_457	PF00664	ABC transporter transmembrane region
AT01_458	PF01268	Formate--tetrahydrofolate ligase
AT01_459	PF10754	AT01_459
AT01_46	PF13347	MFS/sugar transport protein
AT01_460	PF02508	AT01_460
AT01_461	PF04060	Putative Fe-S cluster
AT01_461	PF14697	4Fe-4S dicluster domain
AT01_462	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AT01_462	PF10531	SLBB domain
AT01_462	PF13237	4Fe-4S dicluster domain
AT01_462	PF13375	RnfC Barrel sandwich hybrid domain
AT01_463	PF06445	GyrI-like small molecule binding domain
AT01_463	PF12833	Helix-turn-helix domain
AT01_464	PF03116	AT01_464
AT01_465	PF04205	FMN-binding domain
AT01_466	PF02508	AT01_466
AT01_467	PF00633	Helix-hairpin-helix motif
AT01_467	PF00730	HhH-GPD superfamily base excision DNA repair protein
AT01_467	PF10576	Iron-sulfur binding domain of endonuclease III
AT01_468	PF00384	Molybdopterin oxidoreductase
AT01_468	PF01568	Molydopterin dinucleotide binding domain
AT01_469	PF00575	S1 RNA binding domain
AT01_469	PF00773	RNB domain
AT01_469	PF08206	Ribonuclease B OB domain
AT01_47	PF13347	MFS/sugar transport protein
AT01_470	PF02554	AT01_470
AT01_470	PF13722	AT01_470
AT01_471	PF04328	AT01_471
AT01_472	PF00923	Transaldolase
AT01_473	PF00455	AT01_473
AT01_473	PF08220	DeoR-like helix-turn-helix domain
AT01_474	PF09932	AT01_474
AT01_475	PF00596	Class II Aldolase and Adducin N-terminal domain
AT01_476	PF05433	AT01_476
AT01_477	PF01253	Translation initiation factor SUI1
AT01_478	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AT01_479	PF07338	Protein of unknown function (DUF1471)
AT01_48	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AT01_481	PF13176	Tetratricopeptide repeat
AT01_482	PF06305	AT01_482
AT01_483	PF01569	PAP2 superfamily
AT01_484	PF00925	GTP cyclohydrolase II
AT01_485	PF00330	Aconitase family (aconitate hydratase)
AT01_485	PF00694	Aconitase C-terminal domain
AT01_486	PF00378	Enoyl-CoA hydratase/isomerase family
AT01_487	PF02515	CoA-transferase family III
AT01_488	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_488	PF03466	LysR substrate binding domain
AT01_489	PF01131	DNA topoisomerase
AT01_489	PF01396	AT01_489
AT01_489	PF01751	Toprim domain
AT01_489	PF08272	Topoisomerase I zinc-ribbon-like
AT01_490	PF10692	Protein of unknown function (DUF2498)
AT01_491	PF01343	Peptidase family S49
AT01_491	PF08496	AT01_491
AT01_492	PF00106	short chain dehydrogenase
AT01_493	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AT01_494	PF00849	RNA pseudouridylate synthase
AT01_494	PF01479	S4 domain
AT01_495	PF01300	Telomere recombination
AT01_497	PF00425	chorismate binding enzyme
AT01_497	PF04715	Anthranilate synthase component I, N terminal region
AT01_498	PF00117	Glutamine amidotransferase class-I
AT01_499	PF00591	Glycosyl transferase family, a/b domain
AT01_499	PF02885	Glycosyl transferase family, helical bundle domain
AT01_50	PF00483	Nucleotidyl transferase
AT01_500	PF00218	Indole-3-glycerol phosphate synthase
AT01_500	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AT01_501	PF00291	Pyridoxal-phosphate dependent enzyme
AT01_502	PF00290	Tryptophan synthase alpha chain
AT01_503	PF04972	BON domain
AT01_504	PF03922	OmpW family
AT01_505	PF06790	AT01_505
AT01_506	PF00916	AT01_506
AT01_506	PF01740	STAS domain
AT01_507	PF04279	AT01_507
AT01_508	PF03061	Thioesterase superfamily
AT01_509	PF03544	Gram-negative bacterial TonB protein C-terminal
AT01_509	PF16031	AT01_509
AT01_51	PF00328	Histidine phosphatase superfamily (branch 2)
AT01_510	PF03795	YCII-related domain
AT01_512	PF00563	EAL domain
AT01_513	PF13091	PLD-like domain
AT01_513	PF13396	AT01_513
AT01_514	PF04269	Protein of unknown function, DUF440
AT01_515	PF00005	ABC transporter
AT01_515	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_516	PF00005	ABC transporter
AT01_516	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AT01_517	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_517	PF12911	AT01_517
AT01_518	PF00528	Binding-protein-dependent transport system inner membrane component
AT01_519	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AT01_52	PF14001	AT01_52
AT01_521	PF01914	AT01_521
AT01_522	PF00171	Aldehyde dehydrogenase family
AT01_522	PF00465	Iron-containing alcohol dehydrogenase
AT01_523	PF00265	Thymidine kinase
AT01_524	PF00816	H-NS histone family
AT01_525	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AT01_525	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AT01_525	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AT01_526	PF00072	Response regulator receiver domain
AT01_527	PF01734	Patatin-like phospholipase
AT01_528	PF00583	Acetyltransferase (GNAT) family
AT01_529	PF02810	SEC-C motif
AT01_53	PF11004	AT01_53
AT01_530	PF00551	Formyl transferase
AT01_530	PF01842	ACT domain
AT01_533	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_534	PF03372	Endonuclease/Exonuclease/phosphatase family
AT01_535	PF00293	NUDIX domain
AT01_536	PF07383	AT01_536
AT01_537	PF01131	DNA topoisomerase
AT01_537	PF01751	Toprim domain
AT01_538	PF00586	AIR synthase related protein, N-terminal domain
AT01_538	PF02769	AIR synthase related protein, C-terminal domain
AT01_539	PF00881	Nitroreductase family
AT01_54	PF01037	AsnC family
AT01_54	PF13404	AsnC-type helix-turn-helix domain
AT01_540	PF01343	Peptidase family S49
AT01_541	PF00710	Asparaginase
AT01_542	PF00857	Isochorismatase family
AT01_543	PF07023	AT01_543
AT01_544	PF01641	SelR domain
AT01_545	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AT01_545	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AT01_546	PF01263	Aldose 1-epimerase
AT01_547	PF06629	AT01_547
AT01_548	PF06798	AT01_548
AT01_548	PF08298	PrkA AAA domain
AT01_549	PF04285	AT01_549
AT01_55	PF10777	AT01_55
AT01_550	PF00892	EamA-like transporter family
AT01_551	PF00563	EAL domain
AT01_551	PF00990	GGDEF domain
AT01_551	PF08447	PAS fold
AT01_551	PF13185	GAF domain
AT01_551	PF13426	PAS domain
AT01_552	PF07690	Major Facilitator Superfamily
AT01_553	PF00842	Alanine racemase, C-terminal domain
AT01_553	PF01168	Alanine racemase, N-terminal domain
AT01_554	PF01266	FAD dependent oxidoreductase
AT01_555	PF04293	AT01_555
AT01_556	PF00392	Bacterial regulatory proteins, gntR family
AT01_556	PF07840	FadR C-terminal domain
AT01_557	PF06450	AT01_557
AT01_558	PF02600	Disulfide bond formation protein DsbB
AT01_559	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_559	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AT01_56	PF00107	Zinc-binding dehydrogenase
AT01_56	PF08240	Alcohol dehydrogenase GroES-like domain
AT01_561	PF03692	AT01_561
AT01_562	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AT01_563	PF13406	Transglycosylase SLT domain
AT01_564	PF05166	YcgL domain
AT01_566	PF03775	Septum formation inhibitor MinC, C-terminal domain
AT01_566	PF05209	Septum formation inhibitor MinC, N-terminal domain
AT01_567	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AT01_568	PF03776	Septum formation topological specificity factor MinE
AT01_569	PF00570	HRDC domain
AT01_569	PF01612	3'-5' exonuclease
AT01_57	PF00703	Glycosyl hydrolases family 2
AT01_57	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
AT01_57	PF02837	Glycosyl hydrolases family 2, sugar binding domain
AT01_57	PF02929	Beta galactosidase small chain
AT01_57	PF16353	AT01_57
AT01_570	PF00501	AMP-binding enzyme
AT01_570	PF13193	AMP-binding enzyme C-terminal domain
AT01_571	PF03843	AT01_571
AT01_572	PF00814	Glycoprotease family
AT01_573	PF06733	DEAD_2
AT01_573	PF13307	Helicase C-terminal domain
AT01_574	PF01042	Endoribonuclease L-PSP
AT01_575	PF00893	Small Multidrug Resistance protein
AT01_576	PF00893	Small Multidrug Resistance protein
AT01_577	PF01081	KDPG and KHG aldolase
AT01_578	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AT01_578	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AT01_579	PF01380	SIS domain
AT01_579	PF01418	Helix-turn-helix domain, rpiR family
AT01_58	PF00313	'Cold-shock' DNA-binding domain
AT01_580	PF00224	Pyruvate kinase, barrel domain
AT01_580	PF02887	Pyruvate kinase, alpha/beta domain
AT01_581	PF03279	AT01_581
AT01_582	PF01551	Peptidase family M23
AT01_582	PF04225	Opacity-associated protein A LysM-like domain
AT01_582	PF08525	AT01_582
AT01_583	PF01297	Periplasmic solute binding protein family
AT01_584	PF00005	ABC transporter
AT01_585	PF00950	AT01_585
AT01_586	PF00854	POT family
AT01_587	PF05491	Holliday junction DNA helicase ruvB C-terminus
AT01_587	PF05496	Holliday junction DNA helicase ruvB N-terminus
AT01_588	PF01330	RuvA N terminal domain
AT01_588	PF07499	RuvA, C-terminal domain
AT01_588	PF14520	Helix-hairpin-helix domain
AT01_589	PF02075	Crossover junction endodeoxyribonuclease RuvC
AT01_59	PF10781	AT01_59
AT01_590	PF01709	Transcriptional regulator
AT01_591	PF00293	NUDIX domain
AT01_592	PF00152	tRNA synthetases class II (D, K and N)
AT01_592	PF01336	OB-fold nucleic acid binding domain
AT01_592	PF02938	GAD domain
AT01_593	PF00857	Isochorismatase family
AT01_594	PF01904	Protein of unknown function DUF72
AT01_595	PF01124	MAPEG family
AT01_596	PF13649	Methyltransferase domain
AT01_597	PF08003	Protein of unknown function (DUF1698)
AT01_598	PF03932	CutC family
AT01_599	PF06185	YecM protein
AT01_6	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_6	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_60	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_60	PF00672	HAMP domain
AT01_60	PF02203	Tar ligand binding domain homologue
AT01_600	PF00750	tRNA synthetases class I (R)
AT01_600	PF03485	Arginyl tRNA synthetase N terminal domain
AT01_600	PF05746	DALR anticodon binding domain
AT01_601	PF03023	AT01_601
AT01_602	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AT01_603	PF04337	Protein of unknown function, DUF480
AT01_604	PF13302	Acetyltransferase (GNAT) domain
AT01_605	PF07690	Major Facilitator Superfamily
AT01_606	PF07273	Protein of unknown function (DUF1439)
AT01_607	PF02613	Nitrate reductase delta subunit
AT01_608	PF02811	PHP domain
AT01_609	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AT01_61	PF02308	AT01_61
AT01_611	PF03009	Glycerophosphoryl diester phosphodiesterase family
AT01_613	PF00990	GGDEF domain
AT01_615	PF00916	AT01_615
AT01_615	PF01740	STAS domain
AT01_616	PF00793	DAHP synthetase I family
AT01_617	PF13369	AT01_617
AT01_617	PF13371	Tetratricopeptide repeat
AT01_618	PF04247	AT01_618
AT01_619	PF13847	Methyltransferase domain
AT01_62	PF00122	E1-E2 ATPase
AT01_62	PF00689	Cation transporting ATPase, C-terminus
AT01_62	PF00690	Cation transporter/ATPase, N-terminus
AT01_62	PF00702	haloacid dehalogenase-like hydrolase
AT01_620	PF00472	RF-1 domain
AT01_620	PF03462	PCRF domain
AT01_621	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AT01_621	PF01488	Shikimate / quinate 5-dehydrogenase
AT01_621	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AT01_622	PF03550	Outer membrane lipoprotein LolB
AT01_623	PF00288	GHMP kinases N terminal domain
AT01_623	PF08544	GHMP kinases C terminal
AT01_624	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AT01_624	PF14572	Phosphoribosyl synthetase-associated domain
AT01_625	PF10762	AT01_625
AT01_626	PF01195	Peptidyl-tRNA hydrolase
AT01_628	PF01926	50S ribosome-binding GTPase
AT01_628	PF06071	Protein of unknown function (DUF933)
AT01_629	PF03960	ArsC family
AT01_63	PF00107	Zinc-binding dehydrogenase
AT01_63	PF16884	AT01_63
AT01_630	PF02040	AT01_630
AT01_631	PF01022	Bacterial regulatory protein, arsR family
AT01_632	PF01476	LysM domain
AT01_632	PF01551	Peptidase family M23
AT01_633	PF02502	Ribose/Galactose Isomerase
AT01_633	PF12408	Ribose-5-phosphate isomerase
AT01_635	PF02653	AT01_635
AT01_636	PF00005	ABC transporter
AT01_637	PF13407	Periplasmic binding protein domain
AT01_638	PF05962	HutD
AT01_639	PF01979	Amidohydrolase family
AT01_64	PF00582	Universal stress protein family
AT01_640	PF00392	Bacterial regulatory proteins, gntR family
AT01_640	PF07702	UTRA domain
AT01_641	PF01979	Amidohydrolase family
AT01_642	PF05013	N-formylglutamate amidohydrolase
AT01_643	PF00267	Gram-negative porin
AT01_644	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AT01_645	PF04996	Succinylarginine dihydrolase
AT01_646	PF00171	Aldehyde dehydrogenase family
AT01_647	PF04958	Arginine N-succinyltransferase beta subunit
AT01_648	PF00202	Aminotransferase class-III
AT01_649	PF00155	Aminotransferase class I and II
AT01_649	PF00392	Bacterial regulatory proteins, gntR family
AT01_65	PF05247	Flagellar transcriptional activator (FlhD)
AT01_650	PF01654	AT01_650
AT01_651	PF02322	AT01_651
AT01_652	PF10617	AT01_652
AT01_653	PF00672	HAMP domain
AT01_653	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_653	PF07730	Histidine kinase
AT01_653	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AT01_654	PF07690	Major Facilitator Superfamily
AT01_655	PF04954	Siderophore-interacting protein
AT01_655	PF08021	Siderophore-interacting FAD-binding domain
AT01_656	PF01699	Sodium/calcium exchanger protein
AT01_657	PF02562	PhoH-like protein
AT01_659	PF13302	Acetyltransferase (GNAT) domain
AT01_66	PF05280	Flagellar transcriptional activator (FlhC)
AT01_660	PF13994	AT01_660
AT01_661	PF00535	Glycosyl transferase family 2
AT01_662	PF01522	Polysaccharide deacetylase
AT01_662	PF14883	Hypothetical glycosyl hydrolase family 13
AT01_664	PF00557	Metallopeptidase family M24
AT01_664	PF01321	Creatinase/Prolidase N-terminal domain
AT01_665	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AT01_666	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AT01_666	PF03466	LysR substrate binding domain
AT01_667	PF03848	Tellurite resistance protein TehB
AT01_667	PF09313	Domain of unknown function (DUF1971)
AT01_668	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AT01_669	PF00578	AhpC/TSA family
AT01_67	PF01618	AT01_67
AT01_670	PF00005	ABC transporter
AT01_671	PF02687	AT01_671
AT01_671	PF12704	MacB-like periplasmic core domain
AT01_672	PF02687	AT01_672
AT01_672	PF12704	MacB-like periplasmic core domain
AT01_673	PF04945	YHS domain
AT01_673	PF10080	AT01_673
AT01_674	PF10634	Fe2+ transport protein
AT01_675	PF03239	AT01_675
AT01_676	PF07690	Major Facilitator Superfamily
AT01_677	PF04960	Glutaminase
AT01_678	PF00872	AT01_678
AT01_679	PF00989	PAS fold
AT01_679	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_679	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AT01_679	PF17203	AT01_679
AT01_68	PF00691	OmpA family
AT01_68	PF13677	AT01_68
AT01_680	PF00072	Response regulator receiver domain
AT01_682	PF00324	Amino acid permease
AT01_683	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AT01_684	PF08282	haloacid dehalogenase-like hydrolase
AT01_685	PF00072	Response regulator receiver domain
AT01_685	PF00990	GGDEF domain
AT01_686	PF00072	Response regulator receiver domain
AT01_686	PF00512	His Kinase A (phospho-acceptor) domain
AT01_686	PF01627	Hpt domain
AT01_686	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_686	PF03924	CHASE domain
AT01_686	PF08447	PAS fold
AT01_686	PF13426	PAS domain
AT01_687	PF00703	Glycosyl hydrolases family 2
AT01_687	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
AT01_687	PF02837	Glycosyl hydrolases family 2, sugar binding domain
AT01_688	PF11329	AT01_688
AT01_689	PF11329	AT01_689
AT01_69	PF01584	CheW-like domain
AT01_69	PF01627	Hpt domain
AT01_69	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_69	PF02895	Signal transducing histidine kinase, homodimeric domain
AT01_69	PF09078	CheY binding
AT01_690	PF11329	AT01_690
AT01_691	PF00535	Glycosyl transferase family 2
AT01_692	PF13581	Histidine kinase-like ATPase domain
AT01_693	PF00132	Bacterial transferase hexapeptide (six repeats)
AT01_693	PF00483	Nucleotidyl transferase
AT01_694	PF01740	STAS domain
AT01_695	PF00072	Response regulator receiver domain
AT01_695	PF07228	Stage II sporulation protein E (SpoIIE)
AT01_697	PF00343	Carbohydrate phosphorylase
AT01_698	PF10129	AT01_698
AT01_7	PF00419	Fimbrial protein
AT01_70	PF01584	CheW-like domain
AT01_700	PF07690	Major Facilitator Superfamily
AT01_701	PF00561	alpha/beta hydrolase fold
AT01_702	PF12146	Putative lysophospholipase
AT01_703	PF00872	AT01_703
AT01_705	PF07377	Protein of unknown function (DUF1493)
AT01_712	PF11863	AT01_712
AT01_713	PF06381	AT01_713
AT01_716	PF05638	Protein of unknown function (DUF796)
AT01_717	PF13988	AT01_717
AT01_72	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_72	PF00672	HAMP domain
AT01_72	PF02203	Tar ligand binding domain homologue
AT01_720	PF00665	Integrase core domain
AT01_723	PF00589	Phage integrase family
AT01_726	PF07377	Protein of unknown function (DUF1493)
AT01_727	PF02413	AT01_727
AT01_73	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_73	PF00672	HAMP domain
AT01_73	PF02203	Tar ligand binding domain homologue
AT01_730	PF11041	AT01_730
AT01_731	PF04865	AT01_731
AT01_738	PF00145	C-5 cytosine-specific DNA methylase
AT01_74	PF01739	CheR methyltransferase, SAM binding domain
AT01_74	PF03705	CheR methyltransferase, all-alpha domain
AT01_740	PF13304	AAA domain
AT01_743	PF11863	AT01_743
AT01_747	PF13262	AT01_747
AT01_749	PF09950	AT01_749
AT01_75	PF00072	Response regulator receiver domain
AT01_75	PF01339	CheB methylesterase
AT01_751	PF09979	AT01_751
AT01_752	PF04233	AT01_752
AT01_753	PF06381	AT01_753
AT01_755	PF00872	AT01_755
AT01_756	PF03592	Terminase small subunit
AT01_76	PF00072	Response regulator receiver domain
AT01_760	PF02195	ParB-like nuclease domain
AT01_763	PF10828	AT01_763
AT01_764	PF00959	Phage lysozyme
AT01_765	PF04971	AT01_765
AT01_768	PF06323	AT01_768
AT01_769	PF07102	Protein of unknown function (DUF1364)
AT01_77	PF04344	Chemotaxis phosphatase, CheZ
AT01_770	PF07105	AT01_770
AT01_772	PF06114	Domain of unknown function (DUF955)
AT01_772	PF13560	Helix-turn-helix domain
AT01_775	PF11672	AT01_775
AT01_778	PF06254	Protein of unknown function (DUF1019)
AT01_779	PF14549	DNA-binding transcriptional regulator Cro
AT01_78	PF01312	FlhB HrpN YscU SpaS Family
AT01_780	PF01381	Helix-turn-helix
AT01_782	PF07358	AT01_782
AT01_786	PF05565	AT01_786
AT01_787	PF07825	Excisionase-like protein
AT01_788	PF00589	Phage integrase family
AT01_788	PF09003	Bacteriophage lambda integrase, N-terminal domain
AT01_789	PF10709	AT01_789
AT01_79	PF00771	FHIPEP family
AT01_790	PF05425	AT01_790
AT01_791	PF04234	CopC domain
AT01_792	PF00210	Ferritin-like domain
AT01_793	PF06440	DNA polymerase III, theta subunit
AT01_794	PF00561	alpha/beta hydrolase fold
AT01_796	PF00929	Exonuclease
AT01_797	PF00326	Prolyl oligopeptidase family
AT01_797	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AT01_798	PF13995	YebF-like protein
AT01_799	PF04266	ASCH domain
AT01_8	PF00577	Outer membrane usher protein
AT01_8	PF13953	PapC C-terminal domain
AT01_8	PF13954	PapC N-terminal domain
AT01_80	PF06366	AT01_80
AT01_800	PF07130	YebG protein
AT01_801	PF00270	DEAD/DEAH box helicase
AT01_801	PF00271	Helicase conserved C-terminal domain
AT01_801	PF03880	DbpA RNA binding domain
AT01_802	PF02222	ATP-grasp domain
AT01_803	PF03701	AT01_803
AT01_804	PF00425	chorismate binding enzyme
AT01_804	PF04715	Anthranilate synthase component I, N terminal region
AT01_805	PF00293	NUDIX domain
AT01_806	PF03313	AT01_806
AT01_806	PF03315	Serine dehydratase beta chain
AT01_807	PF00571	CBS domain
AT01_807	PF03471	Transporter associated domain
AT01_807	PF03741	AT01_807
AT01_808	PF03610	PTS system fructose IIA component
AT01_808	PF03830	PTS system sorbose subfamily IIB component
AT01_809	PF03609	AT01_809
AT01_81	PF05130	FlgN protein
AT01_810	PF03613	AT01_810
AT01_811	PF06173	AT01_811
AT01_812	PF02659	AT01_812
AT01_813	PF00593	TonB dependent receptor
AT01_813	PF07715	TonB-dependent Receptor Plug Domain
AT01_815	PF13847	Methyltransferase domain
AT01_816	PF00905	Penicillin binding protein transpeptidase domain
AT01_816	PF03717	Penicillin-binding Protein dimerisation domain
AT01_817	PF02578	Multi-copper polyphenol oxidoreductase laccase
AT01_818	PF00313	'Cold-shock' DNA-binding domain
AT01_819	PF07017	Antimicrobial peptide resistance and lipid A acylation protein PagP
AT01_82	PF04316	Anti-sigma-28 factor, FlgM
AT01_820	PF00324	Amino acid permease
AT01_821	PF13269	AT01_821
AT01_822	PF10765	Protein of unknown function (DUF2591)
AT01_823	PF13974	AT01_823
AT01_824	PF13996	AT01_824
AT01_825	PF10964	AT01_825
AT01_827	PF12833	Helix-turn-helix domain
AT01_83	PF13144	SAF-like
AT01_830	PF13520	Amino acid permease
AT01_831	PF00583	Acetyltransferase (GNAT) family
AT01_832	PF13276	AT01_832
AT01_832	PF13683	AT01_832
AT01_833	PF01527	Transposase
AT01_834	PF00005	ABC transporter
AT01_834	PF00664	ABC transporter transmembrane region
AT01_835	PF01163	RIO1 family
AT01_836	PF01638	HxlR-like helix-turn-helix
AT01_837	PF05368	NmrA-like family
AT01_838	PF00657	GDSL-like Lipase/Acylhydrolase
AT01_839	PF03945	delta endotoxin, N-terminal domain
AT01_84	PF00460	Flagella basal body rod protein
AT01_841	PF10828	AT01_841
AT01_842	PF13539	D-alanyl-D-alanine carboxypeptidase
AT01_843	PF16083	AT01_843
AT01_844	PF00486	Transcriptional regulatory protein, C terminal
AT01_845	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AT01_847	PF00356	Bacterial regulatory proteins, lacI family
AT01_847	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AT01_848	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AT01_848	PF08244	Glycosyl hydrolases family 32 C terminal
AT01_849	PF01306	LacY proton/sugar symporter
AT01_85	PF00460	Flagella basal body rod protein
AT01_85	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AT01_850	PF04932	AT01_850
AT01_852	PF00535	Glycosyl transferase family 2
AT01_853	PF00180	Isocitrate/isopropylmalate dehydrogenase
AT01_854	PF00849	RNA pseudouridylate synthase
AT01_855	PF00293	NUDIX domain
AT01_856	PF03054	tRNA methyl transferase
AT01_857	PF04356	Protein of unknown function (DUF489)
AT01_858	PF00206	Lyase
AT01_858	PF08328	Adenylosuccinate lyase C-terminal
AT01_859	PF13505	Outer membrane protein beta-barrel domain
AT01_86	PF03963	AT01_86
AT01_86	PF13860	FlgD Ig-like domain
AT01_86	PF13861	FlgD Tudor-like domain
AT01_860	PF00072	Response regulator receiver domain
AT01_860	PF00486	Transcriptional regulatory protein, C terminal
AT01_861	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AT01_861	PF08918	PhoQ Sensor
AT01_862	PF08007	Cupin superfamily protein
AT01_863	PF01546	Peptidase family M20/M25/M40
AT01_863	PF07687	Peptidase dimerisation domain
AT01_864	PF02146	Sir2 family
AT01_865	PF00480	ROK family
AT01_866	PF02687	AT01_866
AT01_866	PF12704	MacB-like periplasmic core domain
AT01_867	PF00005	ABC transporter
AT01_868	PF02687	AT01_868
AT01_868	PF12704	MacB-like periplasmic core domain
AT01_869	PF00270	DEAD/DEAH box helicase
AT01_869	PF00271	Helicase conserved C-terminal domain
AT01_869	PF02559	CarD-like/TRCF domain
AT01_869	PF03461	TRCF domain
AT01_87	PF00460	Flagella basal body rod protein
AT01_87	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AT01_87	PF07559	Flagellar basal body protein FlaE
AT01_870	PF05433	AT01_870
AT01_871	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_872	PF05728	Uncharacterised protein family (UPF0227)
AT01_873	PF00933	Glycosyl hydrolase family 3 N terminal domain
AT01_874	PF01636	Phosphotransferase enzyme family
AT01_875	PF13036	Protein of unknown function (DUF3897)
AT01_876	PF07233	Protein of unknown function (DUF1425)
AT01_877	PF01230	HIT domain
AT01_878	PF00367	phosphotransferase system, EIIB
AT01_878	PF02378	Phosphotransferase system, EIIC
AT01_879	PF01026	TatD related DNase
AT01_88	PF00460	Flagella basal body rod protein
AT01_88	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AT01_880	PF09115	DNA polymerase III, delta subunit, C terminal
AT01_880	PF13177	DNA polymerase III, delta subunit
AT01_881	PF02223	Thymidylate kinase
AT01_882	PF02618	YceG-like family
AT01_883	PF01063	Aminotransferase class IV
AT01_884	PF00109	Beta-ketoacyl synthase, N-terminal domain
AT01_884	PF02801	Beta-ketoacyl synthase, C-terminal domain
AT01_885	PF00550	Phosphopantetheine attachment site
AT01_886	PF13561	Enoyl-(Acyl carrier protein) reductase
AT01_887	PF00698	Acyl transferase domain
AT01_888	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AT01_888	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AT01_889	PF02504	Fatty acid synthesis protein
AT01_89	PF00460	Flagella basal body rod protein
AT01_89	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AT01_890	PF01783	Ribosomal L32p protein family
AT01_891	PF02620	AT01_891
AT01_892	PF02545	Maf-like protein
AT01_893	PF00849	RNA pseudouridylate synthase
AT01_893	PF01479	S4 domain
AT01_894	PF00575	S1 RNA binding domain
AT01_894	PF10150	Ribonuclease E/G family
AT01_894	PF12111	Polyribonucleotide phosphorylase C terminal
AT01_895	PF03992	Antibiotic biosynthesis monooxygenase
AT01_896	PF01979	Amidohydrolase family
AT01_897	PF06183	DinI-like family
AT01_898	PF13991	AT01_898
AT01_899	PF01266	FAD dependent oxidoreductase
AT01_9	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AT01_9	PF02753	Pili assembly chaperone PapD, C-terminal domain
AT01_90	PF02107	AT01_90
AT01_900	PF00196	Bacterial regulatory proteins, luxR family
AT01_901	PF10968	AT01_901
AT01_902	PF01594	AT01_902
AT01_903	PF00581	Rhodanese-like domain
AT01_903	PF12368	AT01_903
AT01_905	PF03279	AT01_905
AT01_906	PF07681	AT01_906
AT01_907	PF07690	Major Facilitator Superfamily
AT01_908	PF00854	POT family
AT01_91	PF02119	AT01_91
AT01_910	PF07119	AT01_910
AT01_911	PF00535	Glycosyl transferase family 2
AT01_912	PF04349	Periplasmic glucan biosynthesis protein, MdoG
AT01_913	PF01757	AT01_913
AT01_915	PF00999	Sodium/hydrogen exchanger family
AT01_915	PF02080	TrkA-C domain
AT01_915	PF03471	Transporter associated domain
AT01_916	PF00892	EamA-like transporter family
AT01_917	PF00196	Bacterial regulatory proteins, luxR family
AT01_917	PF03472	Autoinducer binding domain
AT01_918	PF00765	Autoinducer synthetase
AT01_92	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AT01_92	PF10135	AT01_92
AT01_920	PF00924	Mechanosensitive ion channel
AT01_921	PF07784	AT01_921
AT01_923	PF04358	DsrC like protein
AT01_924	PF00708	Acylphosphatase
AT01_925	PF10672	S-adenosylmethionine-dependent methyltransferase
AT01_926	PF08755	Hemimethylated DNA-binding protein YccV like
AT01_927	PF13380	CoA binding domain
AT01_928	PF09829	AT01_928
AT01_929	PF02142	MGS-like domain
AT01_93	PF00460	Flagella basal body rod protein
AT01_93	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AT01_930	PF00580	UvrD/REP helicase N-terminal domain
AT01_930	PF12462	AT01_930
AT01_930	PF13361	UvrD-like helicase C-terminal domain
AT01_931	PF03733	AT01_931
AT01_932	PF12805	AT01_932
AT01_932	PF13515	AT01_932
AT01_933	PF04993	TfoX N-terminal domain
AT01_933	PF04994	TfoX C-terminal domain
AT01_934	PF03846	Cell division inhibitor SulA
AT01_935	PF00691	OmpA family
AT01_935	PF01389	OmpA-like transmembrane domain
AT01_936	PF06303	Organiser of macrodomain of Terminus of chromosome
AT01_936	PF17414	AT01_936
AT01_937	PF05362	Lon protease (S16) C-terminal proteolytic domain
AT01_937	PF13654	AAA domain
AT01_938	PF07977	FabA-like domain
AT01_939	PF03886	Protein of unknown function (DUF330)
AT01_94	PF00669	Bacterial flagellin N-terminal helical region
AT01_940	PF02470	AT01_940
AT01_941	PF04403	AT01_941
AT01_942	PF00005	ABC transporter
AT01_942	PF12848	ABC transporter
AT01_942	PF16326	AT01_942
AT01_943	PF01170	Putative RNA methylase family UPF0020
AT01_943	PF02926	THUMP domain
AT01_943	PF10672	S-adenosylmethionine-dependent methyltransferase
AT01_944	PF00111	2Fe-2S iron-sulfur cluster binding domain
AT01_944	PF03473	MOSC domain
AT01_944	PF03476	MOSC N-terminal beta barrel domain
AT01_945	PF07126	AT01_945
AT01_946	PF01180	Dihydroorotate dehydrogenase
AT01_947	PF01433	Peptidase family M1
AT01_947	PF11940	Domain of unknown function (DUF3458)
AT01_947	PF17432	AT01_947
AT01_948	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AT01_949	PF00152	tRNA synthetases class II (D, K and N)
AT01_949	PF01336	OB-fold nucleic acid binding domain
AT01_95	PF01311	AT01_95
AT01_950	PF00267	Gram-negative porin
AT01_951	PF00155	Aminotransferase class I and II
AT01_952	PF00563	EAL domain
AT01_952	PF12792	AT01_952
AT01_953	PF00753	Metallo-beta-lactamase superfamily
AT01_954	PF05951	AT01_954
AT01_955	PF01471	Putative peptidoglycan binding domain
AT01_955	PF03734	L,D-transpeptidase catalytic domain
AT01_956	PF04310	MukB N-terminal
AT01_956	PF13558	Putative exonuclease SbcCD, C subunit
AT01_956	PF16330	AT01_956
AT01_957	PF04288	MukE-like family
AT01_958	PF03882	KicB killing factor
AT01_958	PF17192	AT01_958
AT01_958	PF17193	AT01_958
AT01_959	PF13847	Methyltransferase domain
AT01_96	PF01313	AT01_96
AT01_960	PF02698	DUF218 domain
AT01_962	PF03881	Fructosamine kinase
AT01_963	PF02348	Cytidylyltransferase
AT01_964	PF03966	Trm112p-like protein
AT01_965	PF00313	'Cold-shock' DNA-binding domain
AT01_966	PF00313	'Cold-shock' DNA-binding domain
AT01_967	PF07063	Domain of unknown function (DUF1338)
AT01_968	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AT01_969	PF00005	ABC transporter
AT01_969	PF00664	ABC transporter transmembrane region
AT01_97	PF00813	AT01_97
AT01_970	PF00753	Metallo-beta-lactamase superfamily
AT01_970	PF03772	AT01_970
AT01_970	PF13567	AT01_970
AT01_971	PF00216	Bacterial DNA-binding protein
AT01_972	PF00575	S1 RNA binding domain
AT01_973	PF02224	Cytidylate kinase
AT01_974	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AT01_975	PF00266	Aminotransferase class-V
AT01_976	PF00710	Asparaginase
AT01_977	PF02624	YcaO-like family
AT01_978	PF01226	Formate/nitrite transporter
AT01_979	PF01228	Glycine radical
AT01_979	PF02901	Pyruvate formate lyase
AT01_98	PF04347	AT01_98
AT01_980	PF04055	Radical SAM superfamily
AT01_980	PF13353	4Fe-4S single cluster domain
AT01_981	PF07690	Major Facilitator Superfamily
AT01_982	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AT01_982	PF02403	Seryl-tRNA synthetase N-terminal domain
AT01_983	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_983	PF12002	MgsA AAA+ ATPase C terminal
AT01_983	PF16193	AT01_983
AT01_984	PF03548	Outer membrane lipoprotein carrier protein LolA
AT01_985	PF01580	FtsK/SpoIIIE family
AT01_985	PF09397	Ftsk gamma domain
AT01_985	PF13491	AT01_985
AT01_986	PF01037	AsnC family
AT01_986	PF13412	Winged helix-turn-helix DNA-binding
AT01_987	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AT01_989	PF00005	ABC transporter
AT01_989	PF00664	ABC transporter transmembrane region
AT01_99	PF01052	Surface presentation of antigens (SPOA)
AT01_99	PF16973	AT01_99
AT01_990	PF00005	ABC transporter
AT01_990	PF00664	ABC transporter transmembrane region
AT01_991	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AT01_992	PF01176	Translation initiation factor 1A / IF-1
AT01_993	PF00004	ATPase family associated with various cellular activities (AAA)
AT01_993	PF02861	Clp amino terminal domain
AT01_993	PF07724	AAA domain (Cdc48 subfamily)
AT01_993	PF10431	C-terminal, D2-small domain, of ClpB protein
AT01_994	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AT01_995	PF00313	'Cold-shock' DNA-binding domain
AT01_996	PF00005	ABC transporter
AT01_996	PF02687	AT01_996
AT01_996	PF12704	MacB-like periplasmic core domain
AT01_997	PF16576	AT01_997
AT01_998	PF11398	Protein of unknown function (DUF2813)
AT01_999	PF04393	AT01_999