AT01_1009 SM00382 ATPases associated with a variety of cellular activities AT01_1010 SM00062 Bacterial periplasmic substrate-binding proteins AT01_1010 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AT01_1013 SM00062 Bacterial periplasmic substrate-binding proteins AT01_1013 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AT01_1018 SM00382 ATPases associated with a variety of cellular activities AT01_1028 SM00014 Acid phosphatase homologues AT01_1029 SM01133 AT01_1029 AT01_1030 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_1030 SM01134 AT01_1030 AT01_1033 SM00936 Penicillin-binding protein 5, C-terminal domain AT01_1034 SM00116 Domain in cystathionine beta-synthase and other proteins. AT01_104 SM00382 ATPases associated with a variety of cellular activities AT01_1042 SM00382 ATPases associated with a variety of cellular activities AT01_1048 SM00518 AP endonuclease family 2 AT01_1057 SM00841 Elongation factor P, C-terminal AT01_1057 SM01185 AT01_1057 AT01_1060 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_1060 SM00895 AT01_1060 AT01_1063 SM00014 Acid phosphatase homologues AT01_1065 SM00052 Putative diguanylate phosphodiesterase AT01_1069 SM00382 ATPases associated with a variety of cellular activities AT01_1072 SM00363 S4 RNA-binding domain AT01_1073 SM00487 DEAD-like helicases superfamily AT01_1073 SM00490 helicase superfamily c-terminal domain AT01_109 SM00478 endonuclease III AT01_11 SM00062 Bacterial periplasmic substrate-binding proteins AT01_11 SM00387 Histidine kinase-like ATPases AT01_11 SM00388 His Kinase A (phosphoacceptor) domain AT01_11 SM00448 cheY-homologous receiver domain AT01_110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_111 SM00342 helix_turn_helix, arabinose operon control protein AT01_1111 SM00382 ATPases associated with a variety of cellular activities AT01_1134 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_1134 SM00387 Histidine kinase-like ATPases AT01_1134 SM00388 His Kinase A (phosphoacceptor) domain AT01_1134 SM00448 cheY-homologous receiver domain AT01_1135 SM00421 helix_turn_helix, Lux Regulon AT01_1135 SM00448 cheY-homologous receiver domain AT01_1141 SM00387 Histidine kinase-like ATPases AT01_1142 SM00421 helix_turn_helix, Lux Regulon AT01_1142 SM00448 cheY-homologous receiver domain AT01_1143 SM00387 Histidine kinase-like ATPases AT01_1143 SM00388 His Kinase A (phosphoacceptor) domain AT01_1143 SM00448 cheY-homologous receiver domain AT01_1144 SM00434 DNA Topoisomerase IV AT01_1154 SM00852 Probable molybdopterin binding domain AT01_1157 SM01060 AT01_1157 AT01_1162 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AT01_1178 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AT01_1178 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AT01_1179 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AT01_1187 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_119 SM00062 Bacterial periplasmic substrate-binding proteins AT01_119 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AT01_1194 SM00354 helix_turn _helix lactose operon repressor AT01_12 SM00421 helix_turn_helix, Lux Regulon AT01_12 SM00448 cheY-homologous receiver domain AT01_1200 SM00052 Putative diguanylate phosphodiesterase AT01_1204 SM00382 ATPases associated with a variety of cellular activities AT01_1207 SM00062 Bacterial periplasmic substrate-binding proteins AT01_121 SM00382 ATPases associated with a variety of cellular activities AT01_1216 SM00859 Semialdehyde dehydrogenase, NAD binding domain AT01_1218 SM00342 helix_turn_helix, arabinose operon control protein AT01_1227 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AT01_1227 SM00091 PAS domain AT01_1227 SM00267 diguanylate cyclase AT01_1228 SM00825 Beta-ketoacyl synthase AT01_1236 SM00463 Small MutS-related domain AT01_1251 SM00382 ATPases associated with a variety of cellular activities AT01_1259 SM00634 Bacterial Ig-like domain (group 1) AT01_1265 SM00953 AT01_1265 AT01_1267 SM00857 Resolvase, N terminal domain AT01_1271 SM00470 ParB-like nuclease domain AT01_1278 SM00421 helix_turn_helix, Lux Regulon AT01_1279 SM00421 helix_turn_helix, Lux Regulon AT01_1279 SM00448 cheY-homologous receiver domain AT01_1280 SM00062 Bacterial periplasmic substrate-binding proteins AT01_1280 SM00387 Histidine kinase-like ATPases AT01_1280 SM00388 His Kinase A (phosphoacceptor) domain AT01_1280 SM00448 cheY-homologous receiver domain AT01_131 SM00363 S4 RNA-binding domain AT01_1345 SM00530 Helix-turn-helix XRE-family like proteins AT01_136 SM00642 Alpha-amylase domain AT01_1374 SM00840 AT01_1374 AT01_1377 SM01001 AIR carboxylase AT01_1380 SM00382 ATPases associated with a variety of cellular activities AT01_1382 SM00822 AT01_1382 AT01_1384 SM00244 prohibitin homologues AT01_1388 SM00422 helix_turn_helix, mercury resistance AT01_139 SM00421 helix_turn_helix, Lux Regulon AT01_139 SM00448 cheY-homologous receiver domain AT01_14 SM00382 ATPases associated with a variety of cellular activities AT01_140 SM00465 GIY-YIG type nucleases (URI domain) AT01_1408 SM00387 Histidine kinase-like ATPases AT01_1409 SM00493 AT01_1409 AT01_1411 SM00382 ATPases associated with a variety of cellular activities AT01_1434 SM00382 ATPases associated with a variety of cellular activities AT01_1442 SM00938 Nitrogen regulatory protein P-II AT01_1443 SM00382 ATPases associated with a variety of cellular activities AT01_1444 SM00382 ATPases associated with a variety of cellular activities AT01_1445 SM00344 helix_turn_helix ASNC type AT01_1453 SM00411 bacterial (prokaryotic) histone like domain AT01_1454 SM00382 ATPases associated with a variety of cellular activities AT01_1454 SM00464 Found in ATP-dependent protease La (LON) AT01_1455 SM00382 ATPases associated with a variety of cellular activities AT01_1455 SM00994 ClpX C4-type zinc finger AT01_1455 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_1472 SM00981 AT01_1472 AT01_1475 SM00861 Transketolase, pyrimidine binding domain AT01_1484 SM01323 AT01_1484 AT01_1492 SM00642 Alpha-amylase domain AT01_1496 SM00091 PAS domain AT01_1496 SM00387 Histidine kinase-like ATPases AT01_1496 SM00388 His Kinase A (phosphoacceptor) domain AT01_1497 SM00448 cheY-homologous receiver domain AT01_1497 SM00862 Transcriptional regulatory protein, C terminal AT01_1512 SM01068 Putative carbohydrate binding domain AT01_1515 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AT01_1529 SM00900 AT01_1529 AT01_1537 SM00710 Parallel beta-helix repeats AT01_1537 SM00912 haemagglutination activity domain AT01_154 SM00530 Helix-turn-helix XRE-family like proteins AT01_1544 SM01007 Class II Aldolase and Adducin N-terminal domain AT01_1550 SM00347 helix_turn_helix multiple antibiotic resistance protein AT01_1554 SM00967 RNA 2'-O ribose methyltransferase substrate binding AT01_1556 SM01144 AT01_1556 AT01_1557 SM00881 CoA binding domain AT01_1558 SM00155 Phospholipase D. Active site motifs. AT01_1566 SM00382 ATPases associated with a variety of cellular activities AT01_1566 SM00930 AT01_1566 AT01_1574 SM01322 AT01_1574 AT01_1578 SM00977 TilS substrate C-terminal domain AT01_1582 SM00481 DNA polymerase alpha chain like domain AT01_1588 SM00935 Outer membrane protein (OmpH-like) AT01_1590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AT01_1599 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_1604 SM00382 ATPases associated with a variety of cellular activities AT01_1612 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AT01_1612 SM00475 5'-3' exonuclease AT01_1620 SM00925 MltA specific insert domain AT01_1624 SM00646 AT01_1624 AT01_1643 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AT01_1645 SM00927 DNA mismatch repair enzyme MutH AT01_1649 SM00563 Phosphate acyltransferases AT01_1650 SM00354 helix_turn _helix lactose operon repressor AT01_1651 SM00354 helix_turn _helix lactose operon repressor AT01_1656 SM00849 Metallo-beta-lactamase superfamily AT01_1659 SM00862 Transcriptional regulatory protein, C terminal AT01_1672 SM00947 Carbonic anhydrase AT01_1674 SM00822 AT01_1674 AT01_1676 SM00271 DnaJ molecular chaperone homology domain AT01_1677 SM00354 helix_turn _helix lactose operon repressor AT01_1681 SM00344 helix_turn_helix ASNC type AT01_1704 SM00937 AT01_1704 AT01_1710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_1710 SM00387 Histidine kinase-like ATPases AT01_1710 SM00388 His Kinase A (phosphoacceptor) domain AT01_1711 SM00448 cheY-homologous receiver domain AT01_1711 SM00862 Transcriptional regulatory protein, C terminal AT01_1716 SM00822 AT01_1716 AT01_172 SM00530 Helix-turn-helix XRE-family like proteins AT01_1722 SM01011 Aminopeptidase P, N-terminal domain AT01_1736 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AT01_1737 SM00861 Transketolase, pyrimidine binding domain AT01_1744 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AT01_1745 SM00731 SprT homologues. AT01_1750 SM00732 Likely ribonuclease with RNase H fold. AT01_1757 SM01152 AT01_1757 AT01_1759 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_176 SM00530 Helix-turn-helix XRE-family like proteins AT01_1764 SM00478 endonuclease III AT01_1764 SM00525 AT01_1764 AT01_1793 SM00849 Metallo-beta-lactamase superfamily AT01_1795 SM00257 Lysin motif AT01_1795 SM00634 Bacterial Ig-like domain (group 1) AT01_18 SM00387 Histidine kinase-like ATPases AT01_1804 SM00869 Autotransporter beta-domain AT01_1811 SM00382 ATPases associated with a variety of cellular activities AT01_1813 SM01006 Siderophore biosynthesis protein domain AT01_1819 SM00670 Large family of predicted nucleotide-binding domains AT01_184 SM00530 Helix-turn-helix XRE-family like proteins AT01_1842 SM00382 ATPases associated with a variety of cellular activities AT01_1847 SM00342 helix_turn_helix, arabinose operon control protein AT01_1858 SM00421 helix_turn_helix, Lux Regulon AT01_1858 SM00448 cheY-homologous receiver domain AT01_1859 SM00062 Bacterial periplasmic substrate-binding proteins AT01_1859 SM00387 Histidine kinase-like ATPases AT01_1859 SM00448 cheY-homologous receiver domain AT01_1872 SM00382 ATPases associated with a variety of cellular activities AT01_1872 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_1883 SM00382 ATPases associated with a variety of cellular activities AT01_1886 SM00354 helix_turn _helix lactose operon repressor AT01_1889 SM00869 Autotransporter beta-domain AT01_1892 SM00052 Putative diguanylate phosphodiesterase AT01_1892 SM00091 PAS domain AT01_1892 SM00267 diguanylate cyclase AT01_19 SM00421 helix_turn_helix, Lux Regulon AT01_19 SM00448 cheY-homologous receiver domain AT01_1908 SM00862 Transcriptional regulatory protein, C terminal AT01_1916 SM00382 ATPases associated with a variety of cellular activities AT01_1937 SM00342 helix_turn_helix, arabinose operon control protein AT01_1941 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_1944 SM00563 Phosphate acyltransferases AT01_1945 SM00434 DNA Topoisomerase IV AT01_1949 SM00387 Histidine kinase-like ATPases AT01_1949 SM00433 TopoisomeraseII AT01_1962 SM01118 AT01_1962 AT01_1963 SM00287 Bacterial SH3 domain homologues AT01_1964 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_1966 SM00905 Dihydroneopterin aldolase AT01_1967 SM01207 AT01_1967 AT01_1970 SM00400 zinc finger AT01_1970 SM00493 AT01_1970 AT01_1970 SM00766 DNA primase DnaG DnaB-binding AT01_1979 SM00869 Autotransporter beta-domain AT01_1985 SM00858 AT01_1985 AT01_1989 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_1989 SM00895 AT01_1989 AT01_20 SM00448 cheY-homologous receiver domain AT01_2006 SM00530 Helix-turn-helix XRE-family like proteins AT01_2015 SM00749 bacterial OsmY and nodulation domain AT01_2018 SM00073 Histidine Phosphotransfer domain AT01_2018 SM00091 PAS domain AT01_2018 SM00387 Histidine kinase-like ATPases AT01_2018 SM00388 His Kinase A (phosphoacceptor) domain AT01_2018 SM00448 cheY-homologous receiver domain AT01_2019 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_2029 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AT01_2030 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AT01_2037 SM00382 ATPases associated with a variety of cellular activities AT01_2043 SM00382 ATPases associated with a variety of cellular activities AT01_2053 SM00642 Alpha-amylase domain AT01_2055 SM00354 helix_turn _helix lactose operon repressor AT01_2056 SM00831 Cation transporter/ATPase, N-terminus AT01_207 SM01022 AT01_207 AT01_2082 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_2087 SM00052 Putative diguanylate phosphodiesterase AT01_2087 SM00267 diguanylate cyclase AT01_2089 SM00829 Enoylreductase AT01_209 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AT01_209 SM00091 PAS domain AT01_209 SM00267 diguanylate cyclase AT01_2094 SM00878 Biotin carboxylase C-terminal domain AT01_21 SM00091 PAS domain AT01_21 SM00387 Histidine kinase-like ATPases AT01_2100 SM00267 diguanylate cyclase AT01_2102 SM00357 Cold shock protein domain AT01_2103 SM00357 Cold shock protein domain AT01_2108 SM00382 ATPases associated with a variety of cellular activities AT01_2118 SM00530 Helix-turn-helix XRE-family like proteins AT01_2124 SM01005 Alanine racemase, C-terminal domain AT01_2125 SM00382 ATPases associated with a variety of cellular activities AT01_2126 SM00829 Enoylreductase AT01_213 SM00945 ProQ/FINO family AT01_2135 SM00563 Phosphate acyltransferases AT01_214 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AT01_214 SM00245 tail specific protease AT01_2140 SM00382 ATPases associated with a variety of cellular activities AT01_2149 SM01018 B12 binding domain AT01_2150 SM00346 helix_turn_helix isocitrate lyase regulation AT01_2162 SM00798 AICARFT/IMPCHase bienzyme AT01_2162 SM00851 MGS-like domain AT01_2163 SM01209 AT01_2163 AT01_2163 SM01210 AT01_2163 AT01_2165 SM00411 bacterial (prokaryotic) histone like domain AT01_2176 SM00876 Biotin and Thiamin Synthesis associated domain AT01_2177 SM00663 RNA polymerase I subunit A N-terminus AT01_218 SM00346 helix_turn_helix isocitrate lyase regulation AT01_2182 SM00649 Ribosomal protein L11/L12 AT01_2183 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AT01_2183 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AT01_22 SM00764 Citrate lyase ligase C-terminal domain AT01_2206 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AT01_2207 SM01004 Delta-aminolevulinic acid dehydratase AT01_2226 SM00382 ATPases associated with a variety of cellular activities AT01_2236 SM00382 ATPases associated with a variety of cellular activities AT01_2237 SM00382 ATPases associated with a variety of cellular activities AT01_224 SM00382 ATPases associated with a variety of cellular activities AT01_2245 SM00382 ATPases associated with a variety of cellular activities AT01_2246 SM00382 ATPases associated with a variety of cellular activities AT01_2246 SM00962 SRP54-type protein, GTPase domain AT01_2246 SM00963 SRP54-type protein, helical bundle domain AT01_2265 SM00341 Helicase and RNase D C-terminal AT01_2265 SM00487 DEAD-like helicases superfamily AT01_2265 SM00490 helicase superfamily c-terminal domain AT01_2265 SM00956 AT01_2265 AT01_2280 SM01219 AT01_2280 AT01_2299 SM00984 UDP binding domain AT01_2303 SM00357 Cold shock protein domain AT01_2303 SM00382 ATPases associated with a variety of cellular activities AT01_2303 SM00959 Rho termination factor, N-terminal domain AT01_2305 SM00487 DEAD-like helicases superfamily AT01_2305 SM00490 helicase superfamily c-terminal domain AT01_2325 SM00382 ATPases associated with a variety of cellular activities AT01_2330 SM00382 ATPases associated with a variety of cellular activities AT01_2351 SM00382 ATPases associated with a variety of cellular activities AT01_2362 SM00859 Semialdehyde dehydrogenase, NAD binding domain AT01_2374 SM00487 DEAD-like helicases superfamily AT01_2374 SM00490 helicase superfamily c-terminal domain AT01_2375 SM00354 helix_turn _helix lactose operon repressor AT01_2378 SM00382 ATPases associated with a variety of cellular activities AT01_2378 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_2394 SM00448 cheY-homologous receiver domain AT01_2394 SM00862 Transcriptional regulatory protein, C terminal AT01_2395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_2395 SM00387 Histidine kinase-like ATPases AT01_2395 SM00388 His Kinase A (phosphoacceptor) domain AT01_2396 SM00342 helix_turn_helix, arabinose operon control protein AT01_2398 SM00971 Serine acetyltransferase, N-terminal AT01_240 SM00382 ATPases associated with a variety of cellular activities AT01_2402 SM00450 Rhodanese Homology Domain AT01_2406 SM00829 Enoylreductase AT01_2414 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AT01_2414 SM01232 AT01_2414 AT01_2424 SM00052 Putative diguanylate phosphodiesterase AT01_2424 SM00091 PAS domain AT01_2424 SM00267 diguanylate cyclase AT01_2429 SM00532 Ligase N family AT01_2430 SM00072 Guanylate kinase homologues. AT01_2431 SM01409 AT01_2431 AT01_2432 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_2432 SM00954 Region found in RelA / SpoT proteins AT01_2434 SM00487 DEAD-like helicases superfamily AT01_2434 SM00490 helicase superfamily c-terminal domain AT01_2438 SM00421 helix_turn_helix, Lux Regulon AT01_2439 SM00421 helix_turn_helix, Lux Regulon AT01_2440 SM00421 helix_turn_helix, Lux Regulon AT01_2441 SM00421 helix_turn_helix, Lux Regulon AT01_2442 SM00421 helix_turn_helix, Lux Regulon AT01_2443 SM00421 helix_turn_helix, Lux Regulon AT01_2444 SM00421 helix_turn_helix, Lux Regulon AT01_2445 SM00421 helix_turn_helix, Lux Regulon AT01_2452 SM01230 AT01_2452 AT01_2453 SM00091 PAS domain AT01_2453 SM00387 Histidine kinase-like ATPases AT01_2453 SM00388 His Kinase A (phosphoacceptor) domain AT01_2454 SM00382 ATPases associated with a variety of cellular activities AT01_2454 SM00448 cheY-homologous receiver domain AT01_2455 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_2458 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AT01_2458 SM00474 3'-5' exonuclease AT01_2458 SM00475 5'-3' exonuclease AT01_2458 SM00482 DNA polymerase A domain AT01_2468 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_2468 SM00895 AT01_2468 AT01_2469 SM00354 helix_turn _helix lactose operon repressor AT01_2474 SM00382 ATPases associated with a variety of cellular activities AT01_2477 SM00382 ATPases associated with a variety of cellular activities AT01_2478 SM00327 von Willebrand factor (vWF) type A domain AT01_2481 SM00344 helix_turn_helix ASNC type AT01_2483 SM01228 AT01_2483 AT01_249 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AT01_2492 SM00382 ATPases associated with a variety of cellular activities AT01_2500 SM00382 ATPases associated with a variety of cellular activities AT01_2502 SM00062 Bacterial periplasmic substrate-binding proteins AT01_2508 SM00421 helix_turn_helix, Lux Regulon AT01_2508 SM00448 cheY-homologous receiver domain AT01_2509 SM00387 Histidine kinase-like ATPases AT01_2509 SM00388 His Kinase A (phosphoacceptor) domain AT01_2510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_2510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_2514 SM01234 AT01_2514 AT01_2517 SM00382 ATPases associated with a variety of cellular activities AT01_2517 SM00760 Bacterial dnaA protein helix-turn-helix domain AT01_2518 SM00480 DNA polymerase III beta subunit AT01_2520 SM00387 Histidine kinase-like ATPases AT01_2520 SM00433 TopoisomeraseII AT01_254 SM00873 B3/4 domain AT01_254 SM00874 tRNA synthetase B5 domain AT01_254 SM00896 Ferredoxin-fold anticodon binding domain AT01_2546 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_2548 SM00966 SpoVT / AbrB like domain AT01_255 SM00411 bacterial (prokaryotic) histone like domain AT01_2551 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_2551 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_2551 SM01358 AT01_2551 AT01_2554 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AT01_2574 SM00382 ATPases associated with a variety of cellular activities AT01_2576 SM00342 helix_turn_helix, arabinose operon control protein AT01_2587 SM00778 Zinc-binding domain of primase-helicase AT01_2587 SM00885 D5 N terminal like AT01_2589 SM00869 Autotransporter beta-domain AT01_259 SM00382 ATPases associated with a variety of cellular activities AT01_2596 SM00421 helix_turn_helix, Lux Regulon AT01_2596 SM00448 cheY-homologous receiver domain AT01_2597 SM00387 Histidine kinase-like ATPases AT01_2603 SM00382 ATPases associated with a variety of cellular activities AT01_2604 SM00382 ATPases associated with a variety of cellular activities AT01_2613 SM00028 Tetratricopeptide repeats AT01_2614 SM00052 Putative diguanylate phosphodiesterase AT01_2619 SM00052 Putative diguanylate phosphodiesterase AT01_2623 SM00710 Parallel beta-helix repeats AT01_2623 SM00869 Autotransporter beta-domain AT01_2629 SM00235 Zinc-dependent metalloprotease AT01_2630 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AT01_2647 SM00354 helix_turn _helix lactose operon repressor AT01_2651 SM00859 Semialdehyde dehydrogenase, NAD binding domain AT01_2656 SM00382 ATPases associated with a variety of cellular activities AT01_2661 SM00642 Alpha-amylase domain AT01_2662 SM00642 Alpha-amylase domain AT01_2667 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_2667 SM01134 AT01_2667 AT01_2669 SM00450 Rhodanese Homology Domain AT01_2671 SM00421 helix_turn_helix, Lux Regulon AT01_2681 SM00899 AT01_2681 AT01_2682 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_2682 SM00732 Likely ribonuclease with RNase H fold. AT01_2686 SM00448 cheY-homologous receiver domain AT01_2686 SM00862 Transcriptional regulatory protein, C terminal AT01_2687 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_2687 SM00387 Histidine kinase-like ATPases AT01_2687 SM00388 His Kinase A (phosphoacceptor) domain AT01_2690 SM00363 S4 RNA-binding domain AT01_2715 SM00354 helix_turn _helix lactose operon repressor AT01_2722 SM00100 Cyclic nucleotide-monophosphate binding domain AT01_2722 SM00419 helix_turn_helix, cAMP Regulatory protein AT01_2731 SM00382 ATPases associated with a variety of cellular activities AT01_2744 SM00838 Elongation factor G C-terminus AT01_2744 SM00889 Elongation factor G, domain IV AT01_2748 SM01403 AT01_2748 AT01_2752 SM01382 AT01_2752 AT01_2752 SM01383 AT01_2752 AT01_2755 SM00322 K homology RNA-binding domain AT01_2759 SM01374 AT01_2759 AT01_2760 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AT01_2773 SM00363 S4 RNA-binding domain AT01_2773 SM01390 AT01_2773 AT01_2774 SM00662 RNA polymerases D AT01_2776 SM00422 helix_turn_helix, mercury resistance AT01_281 SM00382 ATPases associated with a variety of cellular activities AT01_2821 SM00530 Helix-turn-helix XRE-family like proteins AT01_2822 SM00292 breast cancer carboxy-terminal domain AT01_2838 SM00421 helix_turn_helix, Lux Regulon AT01_2838 SM00448 cheY-homologous receiver domain AT01_2839 SM00387 Histidine kinase-like ATPases AT01_2839 SM00388 His Kinase A (phosphoacceptor) domain AT01_2839 SM00448 cheY-homologous receiver domain AT01_2840 SM00342 helix_turn_helix, arabinose operon control protein AT01_2843 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_2844 SM00382 ATPases associated with a variety of cellular activities AT01_2856 SM00382 ATPases associated with a variety of cellular activities AT01_2864 SM00869 Autotransporter beta-domain AT01_2865 SM00421 helix_turn_helix, Lux Regulon AT01_2887 SM00883 Chaperonin 10 Kd subunit AT01_2891 SM00841 Elongation factor P, C-terminal AT01_2891 SM01185 AT01_2891 AT01_2904 SM00479 AT01_2904 AT01_2911 SM00257 Lysin motif AT01_2911 SM00646 AT01_2911 AT01_2912 SM00853 MutL C terminal dimerisation domain AT01_2912 SM01340 AT01_2912 AT01_2916 SM00244 prohibitin homologues AT01_2917 SM00244 prohibitin homologues AT01_2919 SM00788 Adenylosuccinate synthetase AT01_2921 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_2921 SM00357 Cold shock protein domain AT01_2921 SM00955 AT01_2921 AT01_2922 SM00967 RNA 2'-O ribose methyltransferase substrate binding AT01_2938 SM01091 Transporter associated domain AT01_2957 SM00387 Histidine kinase-like ATPases AT01_2957 SM00388 His Kinase A (phosphoacceptor) domain AT01_2958 SM00448 cheY-homologous receiver domain AT01_2958 SM00862 Transcriptional regulatory protein, C terminal AT01_296 SM00354 helix_turn _helix lactose operon repressor AT01_2961 SM01103 AT01_2961 AT01_2963 SM00382 ATPases associated with a variety of cellular activities AT01_2970 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_2970 SM00322 K homology RNA-binding domain AT01_2974 SM01387 AT01_2974 AT01_2975 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_2975 SM00322 K homology RNA-binding domain AT01_2976 SM00028 Tetratricopeptide repeats AT01_2977 SM00487 DEAD-like helicases superfamily AT01_2977 SM00490 helicase superfamily c-terminal domain AT01_2988 SM00859 Semialdehyde dehydrogenase, NAD binding domain AT01_2990 SM00072 Guanylate kinase homologues. AT01_2992 SM00382 ATPases associated with a variety of cellular activities AT01_2993 SM00382 ATPases associated with a variety of cellular activities AT01_2998 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_2998 SM00866 AT01_2998 AT01_3005 SM00382 ATPases associated with a variety of cellular activities AT01_3006 SM00382 ATPases associated with a variety of cellular activities AT01_301 SM00479 AT01_301 AT01_3024 SM00487 DEAD-like helicases superfamily AT01_3029 SM00912 haemagglutination activity domain AT01_3031 SM00869 Autotransporter beta-domain AT01_3035 SM00421 helix_turn_helix, Lux Regulon AT01_3042 SM01133 AT01_3042 AT01_3046 SM00382 ATPases associated with a variety of cellular activities AT01_3061 SM01120 AT01_3061 AT01_3069 SM00091 PAS domain AT01_3070 SM00354 helix_turn _helix lactose operon repressor AT01_3071 SM00640 Glycosyl hydrolases family 32 AT01_3076 SM00267 diguanylate cyclase AT01_3087 SM00749 bacterial OsmY and nodulation domain AT01_3092 SM01133 AT01_3092 AT01_3093 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AT01_3098 SM00382 ATPases associated with a variety of cellular activities AT01_3099 SM00530 Helix-turn-helix XRE-family like proteins AT01_3102 SM01007 Class II Aldolase and Adducin N-terminal domain AT01_3105 SM00342 helix_turn_helix, arabinose operon control protein AT01_3106 SM00342 helix_turn_helix, arabinose operon control protein AT01_3108 SM00382 ATPases associated with a variety of cellular activities AT01_3109 SM00831 Cation transporter/ATPase, N-terminus AT01_311 SM00347 helix_turn_helix multiple antibiotic resistance protein AT01_3113 SM00342 helix_turn_helix, arabinose operon control protein AT01_3113 SM00871 Bacterial transcription activator, effector binding domain AT01_3114 SM00855 Phosphoglycerate mutase family AT01_3116 SM00448 cheY-homologous receiver domain AT01_3116 SM00862 Transcriptional regulatory protein, C terminal AT01_3122 SM00852 Probable molybdopterin binding domain AT01_3126 SM00271 DnaJ molecular chaperone homology domain AT01_3130 SM00904 Riboflavin kinase AT01_3136 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AT01_3137 SM00851 MGS-like domain AT01_3137 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AT01_3144 SM00650 Ribosomal RNA adenine dimethylases AT01_3148 SM00271 DnaJ molecular chaperone homology domain AT01_3155 SM00634 Bacterial Ig-like domain (group 1) AT01_316 SM00363 S4 RNA-binding domain AT01_3161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_3161 SM00387 Histidine kinase-like ATPases AT01_3161 SM00388 His Kinase A (phosphoacceptor) domain AT01_3162 SM00448 cheY-homologous receiver domain AT01_3162 SM00862 Transcriptional regulatory protein, C terminal AT01_3166 SM00487 DEAD-like helicases superfamily AT01_3166 SM00490 helicase superfamily c-terminal domain AT01_3167 SM00486 DNA polymerase type-B family AT01_3170 SM00382 ATPases associated with a variety of cellular activities AT01_3182 SM01329 AT01_3182 AT01_3183 SM00917 LeuA allosteric (dimerisation) domain AT01_3188 SM00354 helix_turn _helix lactose operon repressor AT01_3203 SM00842 Cell division protein FtsA AT01_3204 SM00864 Tubulin/FtsZ family, GTPase domain AT01_3204 SM00865 Tubulin/FtsZ family, C-terminal domain AT01_3208 SM00957 SecA DEAD-like domain AT01_3208 SM00958 SecA preprotein cross-linking domain AT01_3213 SM01240 AT01_3213 AT01_3218 SM00644 AT01_3218 AT01_3220 SM00634 Bacterial Ig-like domain (group 1) AT01_3224 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_3224 SM00895 AT01_3224 AT01_3229 SM00342 helix_turn_helix, arabinose operon control protein AT01_3240 SM00947 Carbonic anhydrase AT01_3241 SM00382 ATPases associated with a variety of cellular activities AT01_325 SM00382 ATPases associated with a variety of cellular activities AT01_3254 SM00487 DEAD-like helicases superfamily AT01_3254 SM00490 helicase superfamily c-terminal domain AT01_3254 SM00847 Helicase associated domain (HA2) Add an annotation AT01_3256 SM00382 ATPases associated with a variety of cellular activities AT01_326 SM00382 ATPases associated with a variety of cellular activities AT01_3266 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AT01_3267 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AT01_3268 SM00073 Histidine Phosphotransfer domain AT01_3268 SM00448 cheY-homologous receiver domain AT01_3270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_3270 SM00387 Histidine kinase-like ATPases AT01_3270 SM00388 His Kinase A (phosphoacceptor) domain AT01_3272 SM00954 Region found in RelA / SpoT proteins AT01_3275 SM01192 AT01_3275 AT01_3275 SM01193 AT01_3275 AT01_3291 SM00382 ATPases associated with a variety of cellular activities AT01_3293 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3293 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AT01_3300 SM00257 Lysin motif AT01_3302 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AT01_3302 SM00534 ATPase domain of DNA mismatch repair MUTS family AT01_3318 SM00382 ATPases associated with a variety of cellular activities AT01_332 SM00382 ATPases associated with a variety of cellular activities AT01_3320 SM00382 ATPases associated with a variety of cellular activities AT01_3322 SM00825 Beta-ketoacyl synthase AT01_3325 SM00822 AT01_3325 AT01_3326 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3328 SM00869 Autotransporter beta-domain AT01_3330 SM00838 Elongation factor G C-terminus AT01_3330 SM00889 Elongation factor G, domain IV AT01_3331 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AT01_3333 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_3333 SM01134 AT01_3333 AT01_3338 SM01007 Class II Aldolase and Adducin N-terminal domain AT01_3340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AT01_3348 SM00382 ATPases associated with a variety of cellular activities AT01_3350 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AT01_3360 SM01091 Transporter associated domain AT01_3362 SM00382 ATPases associated with a variety of cellular activities AT01_3362 SM00962 SRP54-type protein, GTPase domain AT01_3362 SM00963 SRP54-type protein, helical bundle domain AT01_3369 SM00448 cheY-homologous receiver domain AT01_3369 SM00850 LytTr DNA-binding domain AT01_3371 SM00830 Chorismate mutase type II AT01_3372 SM00830 Chorismate mutase type II AT01_3375 SM00363 S4 RNA-binding domain AT01_3377 SM00382 ATPases associated with a variety of cellular activities AT01_3377 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_3386 SM00563 Phosphate acyltransferases AT01_339 SM00953 AT01_339 AT01_3397 SM00825 Beta-ketoacyl synthase AT01_3399 SM00822 AT01_3399 AT01_3400 SM00825 Beta-ketoacyl synthase AT01_3402 SM00869 Autotransporter beta-domain AT01_3404 SM00257 Lysin motif AT01_3405 SM00849 Metallo-beta-lactamase superfamily AT01_3408 SM00479 AT01_3408 AT01_341 SM00091 PAS domain AT01_341 SM00382 ATPases associated with a variety of cellular activities AT01_3414 SM00382 ATPases associated with a variety of cellular activities AT01_3422 SM00342 helix_turn_helix, arabinose operon control protein AT01_3427 SM00357 Cold shock protein domain AT01_3432 SM00382 ATPases associated with a variety of cellular activities AT01_3433 SM00382 ATPases associated with a variety of cellular activities AT01_3437 SM00988 UreE urease accessory protein, N-terminal domain AT01_344 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AT01_3452 SM00342 helix_turn_helix, arabinose operon control protein AT01_3456 SM00778 Zinc-binding domain of primase-helicase AT01_3456 SM00885 D5 N terminal like AT01_3474 SM00986 Uracil DNA glycosylase superfamily AT01_3474 SM00987 UreE urease accessory protein, C-terminal domain AT01_3480 SM00248 ankyrin repeats AT01_3481 SM00487 DEAD-like helicases superfamily AT01_3481 SM00490 helicase superfamily c-terminal domain AT01_349 SM00148 Phospholipase C, catalytic domain (part); domain X AT01_3492 SM00358 Double-stranded RNA binding motif AT01_3492 SM00535 Ribonuclease III family AT01_350 SM00890 Domain of unknown function AT01_3504 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3505 SM01211 AT01_3505 AT01_3509 SM00387 Histidine kinase-like ATPases AT01_3509 SM00388 His Kinase A (phosphoacceptor) domain AT01_3511 SM00382 ATPases associated with a variety of cellular activities AT01_3511 SM00448 cheY-homologous receiver domain AT01_3513 SM00938 Nitrogen regulatory protein P-II AT01_3532 SM00271 DnaJ molecular chaperone homology domain AT01_3538 SM01359 AT01_3538 AT01_3538 SM01360 AT01_3538 AT01_3540 SM00247 Beta/gamma crystallins AT01_3541 SM00562 AT01_3541 AT01_3543 SM00028 Tetratricopeptide repeats AT01_3544 SM00530 Helix-turn-helix XRE-family like proteins AT01_3548 SM00564 beta-propeller repeat AT01_3553 SM00116 Domain in cystathionine beta-synthase and other proteins. AT01_3553 SM01240 AT01_3553 AT01_3563 SM00116 Domain in cystathionine beta-synthase and other proteins. AT01_3564 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_3564 SM01134 AT01_3564 AT01_3570 SM00046 Diacylglycerol kinase catalytic domain (presumed) AT01_3573 SM00448 cheY-homologous receiver domain AT01_3573 SM00862 Transcriptional regulatory protein, C terminal AT01_3574 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_3574 SM00387 Histidine kinase-like ATPases AT01_3574 SM00388 His Kinase A (phosphoacceptor) domain AT01_3585 SM00052 Putative diguanylate phosphodiesterase AT01_3585 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AT01_3585 SM00091 PAS domain AT01_3585 SM00267 diguanylate cyclase AT01_3586 SM00924 MgtE intracellular N domain AT01_3592 SM00382 ATPases associated with a variety of cellular activities AT01_360 SM00382 ATPases associated with a variety of cellular activities AT01_360 SM00487 DEAD-like helicases superfamily AT01_360 SM00490 helicase superfamily c-terminal domain AT01_360 SM00847 Helicase associated domain (HA2) Add an annotation AT01_3604 SM01130 AT01_3604 AT01_3617 SM00421 helix_turn_helix, Lux Regulon AT01_3617 SM00448 cheY-homologous receiver domain AT01_3620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AT01_3624 SM00919 Malic enzyme, NAD binding domain AT01_3624 SM01274 AT01_3624 AT01_3634 SM00382 ATPases associated with a variety of cellular activities AT01_3637 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_3637 SM00387 Histidine kinase-like ATPases AT01_3637 SM00388 His Kinase A (phosphoacceptor) domain AT01_364 SM00857 Resolvase, N terminal domain AT01_3643 SM00771 ZipA, C-terminal domain (FtsZ-binding) AT01_3644 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AT01_3644 SM00292 breast cancer carboxy-terminal domain AT01_3644 SM00532 Ligase N family AT01_3664 SM00448 cheY-homologous receiver domain AT01_3664 SM00850 LytTr DNA-binding domain AT01_3665 SM00387 Histidine kinase-like ATPases AT01_3675 SM00382 ATPases associated with a variety of cellular activities AT01_3684 SM00382 ATPases associated with a variety of cellular activities AT01_3691 SM00867 YceI-like domain AT01_3707 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AT01_3709 SM00862 Transcriptional regulatory protein, C terminal AT01_3714 SM00421 helix_turn_helix, Lux Regulon AT01_3715 SM00421 helix_turn_helix, Lux Regulon AT01_3718 SM00382 ATPases associated with a variety of cellular activities AT01_3720 SM00421 helix_turn_helix, Lux Regulon AT01_3725 SM00421 helix_turn_helix, Lux Regulon AT01_3727 SM00357 Cold shock protein domain AT01_3729 SM00267 diguanylate cyclase AT01_3731 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_3734 SM00936 Penicillin-binding protein 5, C-terminal domain AT01_3745 SM00382 ATPases associated with a variety of cellular activities AT01_3748 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3751 SM00116 Domain in cystathionine beta-synthase and other proteins. AT01_3751 SM01091 Transporter associated domain AT01_3754 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_3771 SM01081 Putative carbohydrate binding domain AT01_3775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_3782 SM00448 cheY-homologous receiver domain AT01_3782 SM00862 Transcriptional regulatory protein, C terminal AT01_3783 SM00387 Histidine kinase-like ATPases AT01_3783 SM00388 His Kinase A (phosphoacceptor) domain AT01_3792 SM00796 Allophanate hydrolase subunit 1 AT01_3793 SM00797 Allophanate hydrolase subunit 2 AT01_3803 SM00861 Transketolase, pyrimidine binding domain AT01_3806 SM00881 CoA binding domain AT01_382 SM00530 Helix-turn-helix XRE-family like proteins AT01_3826 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3826 SM00387 Histidine kinase-like ATPases AT01_3826 SM00388 His Kinase A (phosphoacceptor) domain AT01_3826 SM00448 cheY-homologous receiver domain AT01_3827 SM00421 helix_turn_helix, Lux Regulon AT01_3827 SM00448 cheY-homologous receiver domain AT01_3829 SM00855 Phosphoglycerate mutase family AT01_383 SM00020 Trypsin-like serine protease AT01_3836 SM00382 ATPases associated with a variety of cellular activities AT01_3841 SM00382 ATPases associated with a variety of cellular activities AT01_3845 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_3845 SM00876 Biotin and Thiamin Synthesis associated domain AT01_3849 SM00382 ATPases associated with a variety of cellular activities AT01_3851 SM00487 DEAD-like helicases superfamily AT01_3851 SM00490 helicase superfamily c-terminal domain AT01_3856 SM00382 ATPases associated with a variety of cellular activities AT01_3858 SM00729 Elongator protein 3, MiaB family, Radical SAM AT01_386 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_386 SM00387 Histidine kinase-like ATPases AT01_386 SM00388 His Kinase A (phosphoacceptor) domain AT01_3865 SM00382 ATPases associated with a variety of cellular activities AT01_3868 SM00487 DEAD-like helicases superfamily AT01_3868 SM00490 helicase superfamily c-terminal domain AT01_387 SM00448 cheY-homologous receiver domain AT01_387 SM00862 Transcriptional regulatory protein, C terminal AT01_3875 SM00507 HNH nucleases AT01_3878 SM00382 ATPases associated with a variety of cellular activities AT01_3883 SM00450 Rhodanese Homology Domain AT01_3889 SM00382 ATPases associated with a variety of cellular activities AT01_3895 SM00487 DEAD-like helicases superfamily AT01_3895 SM00488 AT01_3895 AT01_3895 SM00491 AT01_3895 AT01_3899 SM00382 ATPases associated with a variety of cellular activities AT01_39 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_39 SM01134 AT01_39 AT01_3901 SM00062 Bacterial periplasmic substrate-binding proteins AT01_3901 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AT01_391 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AT01_391 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AT01_3914 SM00382 ATPases associated with a variety of cellular activities AT01_3915 SM00495 Chitin-binding domain type 3 AT01_3915 SM01276 AT01_3915 AT01_3918 SM00852 Probable molybdopterin binding domain AT01_3922 SM00382 ATPases associated with a variety of cellular activities AT01_3930 SM00829 Enoylreductase AT01_3935 SM00354 helix_turn _helix lactose operon repressor AT01_3937 SM00382 ATPases associated with a variety of cellular activities AT01_3939 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AT01_3939 SM00382 ATPases associated with a variety of cellular activities AT01_394 SM00100 Cyclic nucleotide-monophosphate binding domain AT01_394 SM00419 helix_turn_helix, cAMP Regulatory protein AT01_3940 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AT01_3956 SM00919 Malic enzyme, NAD binding domain AT01_3956 SM01274 AT01_3956 AT01_397 SM00871 Bacterial transcription activator, effector binding domain AT01_3970 SM01091 Transporter associated domain AT01_3974 SM00382 ATPases associated with a variety of cellular activities AT01_398 SM00098 Alkaline phosphatase homologues AT01_3989 SM01350 AT01_3989 AT01_4000 SM00382 ATPases associated with a variety of cellular activities AT01_4010 SM00382 ATPases associated with a variety of cellular activities AT01_4018 SM00877 AT01_4018 AT01_4019 SM00877 AT01_4019 AT01_4027 SM00877 AT01_4027 AT01_4028 SM00877 AT01_4028 AT01_4035 SM00877 AT01_4035 AT01_4036 SM00877 AT01_4036 AT01_4039 SM00342 helix_turn_helix, arabinose operon control protein AT01_4055 SM00382 ATPases associated with a variety of cellular activities AT01_4059 SM00855 Phosphoglycerate mutase family AT01_4062 SM00421 helix_turn_helix, Lux Regulon AT01_4071 SM00382 ATPases associated with a variety of cellular activities AT01_4071 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_4089 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AT01_411 SM00421 helix_turn_helix, Lux Regulon AT01_412 SM00869 Autotransporter beta-domain AT01_417 SM00634 Bacterial Ig-like domain (group 1) AT01_422 SM01057 Eukaryotic-type carbonic anhydrase AT01_426 SM00421 helix_turn_helix, Lux Regulon AT01_442 SM00354 helix_turn _helix lactose operon repressor AT01_448 SM00342 helix_turn_helix, arabinose operon control protein AT01_450 SM00382 ATPases associated with a variety of cellular activities AT01_455 SM00382 ATPases associated with a variety of cellular activities AT01_457 SM00382 ATPases associated with a variety of cellular activities AT01_463 SM00342 helix_turn_helix, arabinose operon control protein AT01_465 SM00900 AT01_465 AT01_467 SM00478 endonuclease III AT01_467 SM00525 AT01_467 AT01_469 SM00357 Cold shock protein domain AT01_469 SM00955 AT01_469 AT01_473 SM00420 helix_turn_helix, Deoxyribose operon repressor AT01_473 SM01134 AT01_473 AT01_475 SM01007 Class II Aldolase and Adducin N-terminal domain AT01_478 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AT01_481 SM00028 Tetratricopeptide repeats AT01_483 SM00014 Acid phosphatase homologues AT01_489 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AT01_489 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AT01_489 SM00493 AT01_489 AT01_492 SM00822 AT01_492 AT01_494 SM00363 S4 RNA-binding domain AT01_503 SM00749 bacterial OsmY and nodulation domain AT01_512 SM00052 Putative diguanylate phosphodiesterase AT01_513 SM00155 Phospholipase D. Active site motifs. AT01_515 SM00382 ATPases associated with a variety of cellular activities AT01_516 SM00382 ATPases associated with a variety of cellular activities AT01_524 SM00528 Domain in histone-like proteins of HNS family AT01_525 SM00984 UDP binding domain AT01_526 SM00448 cheY-homologous receiver domain AT01_537 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AT01_537 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AT01_537 SM00493 AT01_537 AT01_54 SM00344 helix_turn_helix ASNC type AT01_541 SM00870 AT01_541 AT01_545 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AT01_548 SM00763 PrkA AAA domain AT01_551 SM00052 Putative diguanylate phosphodiesterase AT01_551 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AT01_551 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AT01_551 SM00091 PAS domain AT01_551 SM00267 diguanylate cyclase AT01_553 SM01005 Alanine racemase, C-terminal domain AT01_556 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_56 SM00829 Enoylreductase AT01_569 SM00341 Helicase and RNase D C-terminal AT01_569 SM00474 3'-5' exonuclease AT01_57 SM01038 Beta galactosidase small chain AT01_573 SM00487 DEAD-like helicases superfamily AT01_573 SM00491 AT01_573 AT01_58 SM00357 Cold shock protein domain AT01_582 SM00257 Lysin motif AT01_584 SM00382 ATPases associated with a variety of cellular activities AT01_587 SM00382 ATPases associated with a variety of cellular activities AT01_588 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AT01_60 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_60 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_60 SM00319 Homologues of the ligand binding domain of Tar AT01_600 SM00836 DALR anticodon binding domain AT01_600 SM01016 Arginyl tRNA synthetase N terminal dom AT01_608 SM00481 DNA polymerase alpha chain like domain AT01_613 SM00267 diguanylate cyclase AT01_62 SM00831 Cation transporter/ATPase, N-terminus AT01_620 SM00937 AT01_620 AT01_624 SM01400 AT01_624 AT01_63 SM00829 Enoylreductase AT01_631 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AT01_632 SM00257 Lysin motif AT01_636 SM00382 ATPases associated with a variety of cellular activities AT01_640 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_640 SM00866 AT01_640 AT01_649 SM00345 helix_turn_helix gluconate operon transcriptional repressor AT01_653 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_653 SM00387 Histidine kinase-like ATPases AT01_670 SM00382 ATPases associated with a variety of cellular activities AT01_679 SM00387 Histidine kinase-like ATPases AT01_680 SM00448 cheY-homologous receiver domain AT01_685 SM00267 diguanylate cyclase AT01_685 SM00448 cheY-homologous receiver domain AT01_686 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AT01_686 SM00091 PAS domain AT01_686 SM00387 Histidine kinase-like ATPases AT01_686 SM00388 His Kinase A (phosphoacceptor) domain AT01_686 SM00448 cheY-homologous receiver domain AT01_686 SM01079 AT01_686 AT01_69 SM00073 Histidine Phosphotransfer domain AT01_69 SM00260 Two component signalling adaptor domain AT01_69 SM00387 Histidine kinase-like ATPases AT01_69 SM01231 AT01_69 AT01_695 SM00331 Sigma factor PP2C-like phosphatases AT01_695 SM00448 cheY-homologous receiver domain AT01_70 SM00260 Two component signalling adaptor domain AT01_72 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_72 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_72 SM00319 Homologues of the ligand binding domain of Tar AT01_73 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AT01_73 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AT01_73 SM00319 Homologues of the ligand binding domain of Tar AT01_74 SM00138 Methyltransferase, chemotaxis proteins AT01_75 SM00448 cheY-homologous receiver domain AT01_76 SM00448 cheY-homologous receiver domain AT01_760 SM00470 ParB-like nuclease domain AT01_772 SM00530 Helix-turn-helix XRE-family like proteins AT01_780 SM00530 Helix-turn-helix XRE-family like proteins AT01_796 SM00479 AT01_796 AT01_799 SM01022 AT01_799 AT01_801 SM00487 DEAD-like helicases superfamily AT01_801 SM00490 helicase superfamily c-terminal domain AT01_807 SM01091 Transporter associated domain AT01_818 SM00357 Cold shock protein domain AT01_827 SM00342 helix_turn_helix, arabinose operon control protein AT01_83 SM00858 AT01_83 AT01_834 SM00382 ATPases associated with a variety of cellular activities AT01_835 SM00090 RIO-like kinase AT01_847 SM00354 helix_turn _helix lactose operon repressor AT01_848 SM00640 Glycosyl hydrolases family 32 AT01_853 SM01329 AT01_853 AT01_860 SM00448 cheY-homologous receiver domain AT01_860 SM00862 Transcriptional regulatory protein, C terminal AT01_861 SM00387 Histidine kinase-like ATPases AT01_861 SM00388 His Kinase A (phosphoacceptor) domain AT01_862 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AT01_867 SM00382 ATPases associated with a variety of cellular activities AT01_869 SM00487 DEAD-like helicases superfamily AT01_869 SM00490 helicase superfamily c-terminal domain AT01_869 SM00982 AT01_869 AT01_869 SM01058 CarD-like/TRCF domain AT01_884 SM00825 Beta-ketoacyl synthase AT01_886 SM00822 AT01_886 AT01_887 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AT01_893 SM00363 S4 RNA-binding domain AT01_894 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_900 SM00421 helix_turn_helix, Lux Regulon AT01_903 SM00450 Rhodanese Homology Domain AT01_915 SM01091 Transporter associated domain AT01_917 SM00421 helix_turn_helix, Lux Regulon AT01_92 SM00047 Lysozyme subfamily 2 AT01_925 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AT01_926 SM00992 Hemimethylated DNA-binding protein YccV like AT01_927 SM00881 CoA binding domain AT01_929 SM00851 MGS-like domain AT01_942 SM00382 ATPases associated with a variety of cellular activities AT01_943 SM00981 AT01_943 AT01_952 SM00052 Putative diguanylate phosphodiesterase AT01_953 SM00849 Metallo-beta-lactamase superfamily AT01_965 SM00357 Cold shock protein domain AT01_966 SM00357 Cold shock protein domain AT01_967 SM01150 AT01_967 AT01_969 SM00382 ATPases associated with a variety of cellular activities AT01_970 SM00849 Metallo-beta-lactamase superfamily AT01_971 SM00411 bacterial (prokaryotic) histone like domain AT01_972 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_976 SM00870 AT01_976 AT01_983 SM00382 ATPases associated with a variety of cellular activities AT01_985 SM00843 AT01_985 AT01_986 SM00344 helix_turn_helix ASNC type AT01_989 SM00382 ATPases associated with a variety of cellular activities AT01_990 SM00382 ATPases associated with a variety of cellular activities AT01_992 SM00316 Ribosomal protein S1-like RNA-binding domain AT01_993 SM00382 ATPases associated with a variety of cellular activities AT01_993 SM01086 C-terminal, D2-small domain, of ClpB protein AT01_995 SM00357 Cold shock protein domain AT01_996 SM00382 ATPases associated with a variety of cellular activities