locus-tag class description CH48_1 PF01063 Amino-transferase class IV CH48_10 PF02545 Maf-like protein CH48_1000 PF03883 Peroxide stress protein YaaA CH48_1002 PF00291 Pyridoxal-phosphate dependent enzyme CH48_1002 PF14821 Threonine synthase N terminus CH48_1003 PF00288 GHMP kinases N terminal domain CH48_1003 PF08544 GHMP kinases C terminal CH48_1004 PF00696 Amino acid kinase family CH48_1004 PF01842 ACT domain CH48_1004 PF00742 Homoserine dehydrogenase CH48_1004 PF13840 ACT domain CH48_1004 PF03447 Homoserine dehydrogenase, NAD binding domain CH48_1005 PF00072 Response regulator receiver domain CH48_1005 PF00486 Transcriptional regulatory protein, C terminal CH48_1006 PF05981 CreA protein CH48_1007 PF00300 Histidine phosphatase superfamily (branch 1) CH48_1008 PF06445 GyrI-like small molecule binding domain CH48_1008 PF12833 Helix-turn-helix domain CH48_1009 PF01931 Protein of unknown function DUF84 CH48_101 PF02698 DUF218 domain CH48_1010 PF01371 Trp repressor protein CH48_1011 PF01464 Transglycosylase SLT domain CH48_1011 PF14718 Soluble lytic murein transglycosylase L domain CH48_1012 PF00690 Cation transporter/ATPase, N-terminus CH48_1012 PF00689 Cation transporting ATPase, C-terminus CH48_1014 PF17152 Periplasmic sensor domain CH48_1014 PF00990 Diguanylate cyclase, GGDEF domain CH48_1015 PF00691 OmpA family CH48_1016 PF12848 ABC transporter CH48_1016 PF00005 ABC transporter CH48_1018 PF03466 LysR substrate binding domain CH48_1018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1019 PF01381 Helix-turn-helix CH48_1019 PF13521 AAA domain CH48_102 PF01636 Phosphotransferase enzyme family CH48_1020 PF00107 Zinc-binding dehydrogenase CH48_1020 PF08240 Alcohol dehydrogenase GroES-like domain CH48_1021 PF18073 Rubredoxin metal binding domain CH48_1022 PF18429 Domain of unknown function (DUF5609) CH48_1023 PF10144 Bacterial virulence factor haemolysin CH48_1024 PF01048 Phosphorylase superfamily CH48_1025 PF01676 Metalloenzyme superfamily CH48_1026 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH48_1026 PF02885 Glycosyl transferase family, helical bundle domain CH48_1026 PF00591 Glycosyl transferase family, a/b domain CH48_1027 PF01791 DeoC/LacD family aldolase CH48_1028 PF07670 Nucleoside recognition CH48_1028 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_1028 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_1029 PF01026 TatD related DNase CH48_103 PF02348 Cytidylyltransferase CH48_1030 PF01734 Patatin-like phospholipase CH48_1031 PF07043 Protein of unknown function (DUF1328) CH48_1032 PF04972 BON domain CH48_1033 PF03144 Elongation factor Tu domain 2 CH48_1033 PF00009 Elongation factor Tu GTP binding domain CH48_1033 PF16658 Class II release factor RF3, C-terminal domain CH48_1034 PF00583 Acetyltransferase (GNAT) family CH48_1035 PF03603 DNA polymerase III psi subunit CH48_1036 PF05175 Methyltransferase small domain CH48_1036 PF08468 Methyltransferase small domain N-terminal CH48_1037 PF00248 Aldo/keto reductase family CH48_1038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1038 PF03466 LysR substrate binding domain CH48_104 PF03966 Trm112p-like protein CH48_1041 PF07256 Protein of unknown function (DUF1435) CH48_1042 PF00990 Diguanylate cyclase, GGDEF domain CH48_1043 PF07715 TonB-dependent Receptor Plug Domain CH48_1043 PF07660 Secretin and TonB N terminus short domain CH48_1043 PF00593 TonB dependent receptor CH48_1045 PF00294 pfkB family carbohydrate kinase CH48_1046 PF11471 Maltoporin periplasmic N-terminal extension CH48_1046 PF02264 LamB porin CH48_1047 PF02378 Phosphotransferase system, EIIC CH48_1047 PF00367 phosphotransferase system, EIIB CH48_1048 PF08244 Glycosyl hydrolases family 32 C terminal CH48_1048 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH48_1049 PF13407 Periplasmic binding protein domain CH48_1049 PF00356 Bacterial regulatory proteins, lacI family CH48_105 PF00313 'Cold-shock' DNA-binding domain CH48_1050 PF00989 PAS fold CH48_1050 PF00158 Sigma-54 interaction domain CH48_1050 PF02954 Bacterial regulatory protein, Fis family CH48_1051 PF01095 Pectinesterase CH48_1056 PF16861 Carbamoyltransferase C-terminus CH48_1056 PF02543 Carbamoyltransferase N-terminus CH48_1058 PF03610 PTS system fructose IIA component CH48_1058 PF05524 PEP-utilising enzyme, N-terminal CH48_1058 PF00381 PTS HPr component phosphorylation site CH48_1058 PF00391 PEP-utilising enzyme, mobile domain CH48_1059 PF02734 DAK2 domain CH48_106 PF00313 'Cold-shock' DNA-binding domain CH48_1060 PF02733 Dak1 domain CH48_1061 PF00465 Iron-containing alcohol dehydrogenase CH48_1062 PF00873 AcrB/AcrD/AcrF family CH48_1063 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_1065 PF13520 Amino acid permease CH48_1067 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_1068 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_1068 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_1069 PF00325 Bacterial regulatory proteins, crp family CH48_1069 PF04198 Putative sugar-binding domain CH48_107 PF07063 Domain of unknown function (DUF1338) CH48_1070 PF00005 ABC transporter CH48_1071 PF02653 Branched-chain amino acid transport system / permease component CH48_1072 PF02653 Branched-chain amino acid transport system / permease component CH48_1073 PF13407 Periplasmic binding protein domain CH48_1074 PF01791 DeoC/LacD family aldolase CH48_1075 PF03992 Antibiotic biosynthesis monooxygenase CH48_1077 PF10696 Protein of unknown function (DUF2501) CH48_1078 PF00872 Transposase, Mutator family CH48_108 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH48_1085 PF00583 Acetyltransferase (GNAT) family CH48_1086 PF13091 PLD-like domain CH48_1086 PF13087 AAA domain CH48_1087 PF00665 Integrase core domain CH48_1088 PF01695 IstB-like ATP binding protein CH48_1089 PF00665 Integrase core domain CH48_1089 PF13276 HTH-like domain CH48_1089 PF13333 Integrase core domain CH48_109 PF00005 ABC transporter CH48_109 PF00664 ABC transporter transmembrane region CH48_1096 PF03739 Lipopolysaccharide export system permease LptF/LptG CH48_1097 PF03739 Lipopolysaccharide export system permease LptF/LptG CH48_1098 PF02789 Cytosol aminopeptidase family, N-terminal domain CH48_1098 PF00883 Cytosol aminopeptidase family, catalytic domain CH48_1099 PF04364 DNA polymerase III chi subunit, HolC CH48_11 PF01479 S4 domain CH48_11 PF00849 RNA pseudouridylate synthase CH48_110 PF03772 Competence protein CH48_110 PF00753 Metallo-beta-lactamase superfamily CH48_1100 PF08264 Anticodon-binding domain of tRNA CH48_1100 PF00133 tRNA synthetases class I (I, L, M and V) CH48_1100 PF10458 Valyl tRNA synthetase tRNA binding arm CH48_1101 PF00583 Acetyltransferase (GNAT) family CH48_1103 PF06877 Regulator of ribonuclease activity B CH48_1104 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH48_1104 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH48_1105 PF04074 YhcH/YjgK/YiaL CH48_1107 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1109 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_1109 PF00005 ABC transporter CH48_111 PF00216 Bacterial DNA-binding protein CH48_1110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_1110 PF00005 ABC transporter CH48_1111 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH48_1111 PF03477 ATP cone domain CH48_1115 PF07702 UTRA domain CH48_1115 PF00392 Bacterial regulatory proteins, gntR family CH48_1116 PF06754 Phosphonate metabolism protein PhnG CH48_1117 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH48_1118 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH48_1119 PF06007 Phosphonate metabolism protein PhnJ CH48_1120 PF00005 ABC transporter CH48_1121 PF00005 ABC transporter CH48_1122 PF07969 Amidohydrolase family CH48_1124 PF13460 NAD(P)H-binding CH48_1125 PF12706 Beta-lactamase superfamily domain CH48_1126 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH48_113 PF00575 S1 RNA binding domain CH48_1130 PF17912 MalK OB fold domain CH48_1130 PF03459 TOBE domain CH48_1130 PF00005 ABC transporter CH48_1131 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1133 PF13416 Bacterial extracellular solute-binding protein CH48_1135 PF07940 Heparinase II/III-like protein CH48_1135 PF05426 Alginate lyase CH48_1136 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_1136 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_1136 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_1137 PF13520 Amino acid permease CH48_1138 PF13508 Acetyltransferase (GNAT) domain CH48_1139 PF01541 GIY-YIG catalytic domain CH48_114 PF02224 Cytidylate kinase CH48_1143 PF03313 Serine dehydratase alpha chain CH48_1145 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_1145 PF02321 Outer membrane efflux protein CH48_1146 PF00296 Luciferase-like monooxygenase CH48_1148 PF03880 DbpA RNA binding domain CH48_1148 PF00270 DEAD/DEAH box helicase CH48_1148 PF00271 Helicase conserved C-terminal domain CH48_1148 PF12343 Cold shock protein DEAD box A CH48_1149 PF07719 Tetratricopeptide repeat CH48_1149 PF13181 Tetratricopeptide repeat CH48_115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH48_1150 PF03725 3' exoribonuclease family, domain 2 CH48_1150 PF00575 S1 RNA binding domain CH48_1150 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH48_1150 PF00013 KH domain CH48_1150 PF01138 3' exoribonuclease family, domain 1 CH48_1151 PF00312 Ribosomal protein S15 CH48_1152 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH48_1152 PF09157 Pseudouridine synthase II TruB, C-terminal CH48_1152 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH48_1153 PF02033 Ribosome-binding factor A CH48_1154 PF04760 Translation initiation factor IF-2, N-terminal region CH48_1154 PF03144 Elongation factor Tu domain 2 CH48_1154 PF08364 Bacterial translation initiation factor IF-2 associated region CH48_1154 PF00009 Elongation factor Tu GTP binding domain CH48_1154 PF11987 Translation-initiation factor 2 CH48_1155 PF13184 NusA-like KH domain CH48_1155 PF08529 NusA N-terminal domain CH48_1155 PF00575 S1 RNA binding domain CH48_1156 PF17384 RimP C-terminal SH3 domain CH48_1156 PF02576 RimP N-terminal domain CH48_1159 PF03840 Preprotein translocase SecG subunit CH48_116 PF00266 Aminotransferase class-V CH48_1160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_1160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_1160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_1160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_1161 PF00809 Pterin binding enzyme CH48_1162 PF01434 Peptidase family M41 CH48_1162 PF17862 AAA+ lid domain CH48_1162 PF06480 FtsH Extracellular CH48_1162 PF00004 ATPase family associated with various cellular activities (AAA) CH48_1163 PF01728 FtsJ-like methyltransferase CH48_1164 PF01985 CRS1 / YhbY (CRM) domain CH48_1165 PF03449 Transcription elongation factor, N-terminal CH48_1165 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_1166 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH48_1167 PF00486 Transcriptional regulatory protein, C terminal CH48_1167 PF00072 Response regulator receiver domain CH48_1168 PF00512 His Kinase A (phospho-acceptor) domain CH48_1168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1168 PF00672 HAMP domain CH48_1169 PF01018 GTP1/OBG CH48_1169 PF01926 50S ribosome-binding GTPase CH48_117 PF04239 Protein of unknown function (DUF421) CH48_1170 PF00892 EamA-like transporter family CH48_1171 PF01016 Ribosomal L27 protein CH48_1172 PF00829 Ribosomal prokaryotic L21 protein CH48_1173 PF00348 Polyprenyl synthetase CH48_1175 PF13693 Winged helix-turn-helix DNA-binding CH48_1176 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH48_1176 PF00056 lactate/malate dehydrogenase, NAD binding domain CH48_1177 PF01316 Arginine repressor, DNA binding domain CH48_1177 PF02863 Arginine repressor, C-terminal domain CH48_1179 PF01225 Mur ligase family, catalytic domain CH48_1179 PF02875 Mur ligase family, glutamate ligase domain CH48_1179 PF08245 Mur ligase middle domain CH48_118 PF00710 Asparaginase, N-terminal CH48_118 PF17763 Glutaminase/Asparaginase C-terminal domain CH48_1182 PF02875 Mur ligase family, glutamate ligase domain CH48_1182 PF08245 Mur ligase middle domain CH48_1182 PF01225 Mur ligase family, catalytic domain CH48_1183 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH48_1184 PF02203 Tar ligand binding domain homologue CH48_1184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_1184 PF00672 HAMP domain CH48_1185 PF00719 Inorganic pyrophosphatase CH48_1188 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH48_119 PF18381 YcaO cyclodehydratase C-terminal domain CH48_119 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH48_1190 PF04357 TamB, inner membrane protein subunit of TAM complex CH48_1191 PF17243 POTRA domain TamA domain 1 CH48_1191 PF01103 Surface antigen CH48_1191 PF07244 Surface antigen variable number repeat CH48_1192 PF01625 Peptide methionine sulfoxide reductase CH48_1193 PF00571 CBS domain CH48_1193 PF03471 Transporter associated domain CH48_1193 PF01595 Cyclin M transmembrane N-terminal domain CH48_1194 PF06526 Protein of unknown function (DUF1107) CH48_1195 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH48_1196 PF00459 Inositol monophosphatase family CH48_1197 PF00149 Calcineurin-like phosphoesterase CH48_1197 PF02872 5'-nucleotidase, C-terminal domain CH48_1198 PF04405 Domain of Unknown function (DUF542) CH48_1198 PF01814 Hemerythrin HHE cation binding domain CH48_1199 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH48_1199 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_12 PF12111 Polyribonucleotide phosphorylase C terminal CH48_12 PF10150 Ribonuclease E/G family CH48_12 PF00575 S1 RNA binding domain CH48_120 PF01226 Formate/nitrite transporter CH48_1200 PF08525 Opacity-associated protein A N-terminal motif CH48_1200 PF04225 Opacity-associated protein A LysM-like domain CH48_1202 PF03948 Ribosomal protein L9, C-terminal domain CH48_1202 PF01281 Ribosomal protein L9, N-terminal domain CH48_1203 PF01084 Ribosomal protein S18 CH48_1204 PF01250 Ribosomal protein S6 CH48_1206 PF00326 Prolyl oligopeptidase family CH48_1207 PF07338 Protein of unknown function (DUF1471) CH48_1208 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH48_1208 PF18158 Adaptive response protein AidB N-terminal domain CH48_1208 PF02770 Acyl-CoA dehydrogenase, middle domain CH48_1209 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH48_1209 PF00588 SpoU rRNA Methylase family CH48_121 PF01228 Glycine radical CH48_121 PF02901 Pyruvate formate lyase-like CH48_1210 PF00575 S1 RNA binding domain CH48_1210 PF00773 RNB domain CH48_1210 PF08206 Ribonuclease B OB domain CH48_1210 PF08461 Ribonuclease R winged-helix domain CH48_1210 PF17876 Cold shock domain CH48_1211 PF02082 Transcriptional regulator CH48_1212 PF00709 Adenylosuccinate synthetase CH48_1213 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH48_1214 PF01145 SPFH domain / Band 7 family CH48_1215 PF12221 Bacterial membrane protein N terminal CH48_1215 PF01145 SPFH domain / Band 7 family CH48_1216 PF01926 50S ribosome-binding GTPase CH48_1216 PF13167 GTP-binding GTPase N-terminal CH48_1216 PF16360 GTP-binding GTPase Middle Region CH48_1217 PF17209 Hfq protein CH48_1219 PF01119 DNA mismatch repair protein, C-terminal domain CH48_1219 PF08676 MutL C terminal dimerisation domain CH48_122 PF04055 Radical SAM superfamily CH48_1220 PF01520 N-acetylmuramoyl-L-alanine amidase CH48_1221 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH48_1222 PF01256 Carbohydrate kinase CH48_1222 PF03853 YjeF-related protein N-terminus CH48_1223 PF08331 Domain of unknown function (DUF1730) CH48_1226 PF00929 Exonuclease CH48_1227 PF03193 RsgA GTPase CH48_1228 PF02666 Phosphatidylserine decarboxylase CH48_1229 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_1229 PF00924 Mechanosensitive ion channel CH48_1229 PF12795 Mechanosensitive ion channel porin domain CH48_123 PF07690 Major Facilitator Superfamily CH48_1230 PF00152 tRNA synthetases class II (D, K and N) CH48_1231 PF00890 FAD binding domain CH48_1231 PF02910 Fumarate reductase flavoprotein C-term CH48_1232 PF13183 4Fe-4S dicluster domain CH48_1232 PF13085 2Fe-2S iron-sulfur cluster binding domain CH48_1233 PF02300 Fumarate reductase subunit C CH48_1234 PF02313 Fumarate reductase subunit D CH48_1235 PF08212 Lipocalin-like domain CH48_1236 PF00893 Small Multidrug Resistance protein CH48_1237 PF08085 Entericidin EcnA/B family CH48_1238 PF08207 Elongation factor P (EF-P) KOW-like domain CH48_1238 PF01132 Elongation factor P (EF-P) OB domain CH48_1238 PF09285 Elongation factor P, C-terminal CH48_1239 PF04055 Radical SAM superfamily CH48_1240 PF13698 Domain of unknown function (DUF4156) CH48_1241 PF00118 TCP-1/cpn60 chaperonin family CH48_1242 PF00166 Chaperonin 10 Kd subunit CH48_1243 PF04186 FxsA cytoplasmic membrane protein CH48_1244 PF10415 Fumarase C C-terminus CH48_1244 PF00206 Lyase CH48_1245 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH48_1246 PF03091 CutA1 divalent ion tolerance protein CH48_1247 PF02683 Cytochrome C biogenesis protein transmembrane region CH48_1247 PF11412 Disulphide bond corrector protein DsbC CH48_1248 PF02595 Glycerate kinase family CH48_125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_125 PF02403 Seryl-tRNA synthetase N-terminal domain CH48_1251 PF01228 Glycine radical CH48_1251 PF02901 Pyruvate formate lyase-like CH48_1252 PF00871 Acetokinase family CH48_1253 PF01490 Transmembrane amino acid transporter protein CH48_1254 PF00291 Pyridoxal-phosphate dependent enzyme CH48_1255 PF04055 Radical SAM superfamily CH48_1256 PF06228 Haem utilisation ChuX/HutX CH48_1258 PF10636 Hemin uptake protein hemP CH48_1259 PF07715 TonB-dependent Receptor Plug Domain CH48_1259 PF00593 TonB dependent receptor CH48_126 PF16193 AAA C-terminal domain CH48_126 PF00004 ATPase family associated with various cellular activities (AAA) CH48_126 PF12002 MgsA AAA+ ATPase C terminal CH48_1260 PF05171 Haemin-degrading HemS.ChuX domain CH48_1261 PF01497 Periplasmic binding protein CH48_1262 PF01032 FecCD transport family CH48_1263 PF00005 ABC transporter CH48_1264 PF00155 Aminotransferase class I and II CH48_1264 PF00392 Bacterial regulatory proteins, gntR family CH48_1266 PF07715 TonB-dependent Receptor Plug Domain CH48_1266 PF00593 TonB dependent receptor CH48_1267 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_1267 PF12795 Mechanosensitive ion channel porin domain CH48_1267 PF00924 Mechanosensitive ion channel CH48_1268 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CH48_1269 PF05193 Peptidase M16 inactive domain CH48_1269 PF00675 Insulinase (Peptidase family M16) CH48_127 PF03548 Outer membrane lipoprotein carrier protein LolA CH48_1270 PF00005 ABC transporter CH48_1270 PF06472 ABC transporter transmembrane region 2 CH48_1271 PF07715 TonB-dependent Receptor Plug Domain CH48_1272 PF16220 Domain of unknown function (DUF4880) CH48_1272 PF04773 FecR protein CH48_1275 PF01206 Sulfurtransferase TusA CH48_1276 PF04143 Sulphur transport CH48_1277 PF01312 FlhB HrpN YscU SpaS Family CH48_1278 PF01311 Bacterial export proteins, family 1 CH48_1279 PF01313 Bacterial export proteins, family 3 CH48_128 PF17854 FtsK alpha domain CH48_128 PF09397 Ftsk gamma domain CH48_128 PF01580 FtsK/SpoIIIE family CH48_128 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH48_1280 PF00813 FliP family CH48_1281 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_1284 PF18269 T3SS EscN ATPase C-terminal domain CH48_1284 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_1285 PF00771 FHIPEP family CH48_1287 PF07201 HrpJ-like domain CH48_129 PF01037 Lrp/AsnC ligand binding domain CH48_1290 PF01514 Secretory protein of YscJ/FliF family CH48_1294 PF14525 AraC-binding-like domain CH48_1294 PF12833 Helix-turn-helix domain CH48_1299 PF04888 Secretion system effector C (SseC) like family CH48_13 PF03992 Antibiotic biosynthesis monooxygenase CH48_1308 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH48_1308 PF00072 Response regulator receiver domain CH48_1308 PF01627 Hpt domain CH48_1308 PF00512 His Kinase A (phospho-acceptor) domain CH48_1308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1308 PF00672 HAMP domain CH48_1309 PF00072 Response regulator receiver domain CH48_1309 PF00196 Bacterial regulatory proteins, luxR family CH48_131 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_1310 PF00375 Sodium:dicarboxylate symporter family CH48_1311 PF13193 AMP-binding enzyme C-terminal domain CH48_1311 PF16177 Acetyl-coenzyme A synthetase N-terminus CH48_1311 PF00501 AMP-binding enzyme CH48_1312 PF04341 Protein of unknown function, DUF485 CH48_1313 PF00474 Sodium:solute symporter family CH48_132 PF00005 ABC transporter CH48_132 PF00664 ABC transporter transmembrane region CH48_1323 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_1324 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH48_1324 PF01488 Shikimate / quinate 5-dehydrogenase CH48_1324 PF08501 Shikimate dehydrogenase substrate binding domain CH48_1325 PF01300 Telomere recombination CH48_1326 PF01396 Topoisomerase DNA binding C4 zinc finger CH48_1327 PF04361 Protein of unknown function (DUF494) CH48_1328 PF17782 DprA winged helix domain CH48_1328 PF02481 DNA recombination-mediator protein A CH48_1329 PF01327 Polypeptide deformylase CH48_133 PF00664 ABC transporter transmembrane region CH48_133 PF00005 ABC transporter CH48_1330 PF00551 Formyl transferase CH48_1330 PF02911 Formyl transferase, C-terminal domain CH48_1331 PF01029 NusB family CH48_1331 PF01189 16S rRNA methyltransferase RsmB/F CH48_1332 PF02254 TrkA-N domain CH48_1332 PF02080 TrkA-C domain CH48_1333 PF01741 Large-conductance mechanosensitive channel, MscL CH48_1336 PF03889 Alternative ribosome-rescue factor A CH48_1337 PF13411 MerR HTH family regulatory protein CH48_1338 PF09350 Domain of unknown function (DUF1992) CH48_1339 PF01196 Ribosomal protein L17 CH48_134 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH48_1340 PF01000 RNA polymerase Rpb3/RpoA insert domain CH48_1340 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH48_1340 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH48_1341 PF00163 Ribosomal protein S4/S9 N-terminal domain CH48_1341 PF01479 S4 domain CH48_1342 PF00411 Ribosomal protein S11 CH48_1343 PF00416 Ribosomal protein S13/S18 CH48_1344 PF00444 Ribosomal protein L36 CH48_1345 PF00344 SecY translocase CH48_1346 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH48_1347 PF00327 Ribosomal protein L30p/L7e CH48_1348 PF03719 Ribosomal protein S5, C-terminal domain CH48_1348 PF00333 Ribosomal protein S5, N-terminal domain CH48_1349 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH48_135 PF01176 Translation initiation factor 1A / IF-1 CH48_1350 PF00347 Ribosomal protein L6 CH48_1351 PF00410 Ribosomal protein S8 CH48_1352 PF00253 Ribosomal protein S14p/S29e CH48_1353 PF00281 Ribosomal protein L5 CH48_1353 PF00673 ribosomal L5P family C-terminus CH48_1354 PF00467 KOW motif CH48_1354 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH48_1355 PF00238 Ribosomal protein L14p/L23e CH48_1356 PF00366 Ribosomal protein S17 CH48_1357 PF00831 Ribosomal L29 protein CH48_1358 PF00252 Ribosomal protein L16p/L10e CH48_1359 PF07650 KH domain CH48_1359 PF00189 Ribosomal protein S3, C-terminal domain CH48_136 PF02861 Clp amino terminal domain, pathogenicity island component CH48_136 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_136 PF17871 AAA lid domain CH48_136 PF00004 ATPase family associated with various cellular activities (AAA) CH48_136 PF07724 AAA domain (Cdc48 subfamily) CH48_1360 PF00237 Ribosomal protein L22p/L17e CH48_1361 PF00203 Ribosomal protein S19 CH48_1362 PF03947 Ribosomal Proteins L2, C-terminal domain CH48_1362 PF00181 Ribosomal Proteins L2, RNA binding domain CH48_1363 PF00276 Ribosomal protein L23 CH48_1364 PF00573 Ribosomal protein L4/L1 family CH48_1365 PF00297 Ribosomal protein L3 CH48_1366 PF00338 Ribosomal protein S10p/S20e CH48_1367 PF00210 Ferritin-like domain CH48_1369 PF04324 BFD-like [2Fe-2S] binding domain CH48_137 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH48_1370 PF03143 Elongation factor Tu C-terminal domain CH48_1370 PF03144 Elongation factor Tu domain 2 CH48_1370 PF00009 Elongation factor Tu GTP binding domain CH48_1371 PF03764 Elongation factor G, domain IV CH48_1371 PF00009 Elongation factor Tu GTP binding domain CH48_1371 PF03144 Elongation factor Tu domain 2 CH48_1371 PF14492 Elongation Factor G, domain II CH48_1371 PF00679 Elongation factor G C-terminus CH48_1372 PF00177 Ribosomal protein S7p/S5e CH48_1373 PF00164 Ribosomal protein S12/S23 CH48_1374 PF04077 DsrH like protein CH48_1375 PF02635 DsrE/DsrF-like family CH48_1376 PF02635 DsrE/DsrF-like family CH48_1377 PF08348 YheO-like PAS domain CH48_1377 PF13309 HTH domain CH48_1378 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_1378 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH48_1379 PF04102 SlyX CH48_1380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_1381 PF09526 Probable metal-binding protein (DUF2387) CH48_1382 PF00999 Sodium/hydrogen exchanger family CH48_1382 PF02254 TrkA-N domain CH48_1383 PF02525 Flavodoxin-like fold CH48_1384 PF12848 ABC transporter CH48_1384 PF00005 ABC transporter CH48_1385 PF00535 Glycosyl transferase family 2 CH48_1387 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH48_1388 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1389 PF00005 ABC transporter CH48_139 PF00313 'Cold-shock' DNA-binding domain CH48_1390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_1391 PF02567 Phenazine biosynthesis-like protein CH48_1392 PF01810 LysE type translocator CH48_1393 PF00561 alpha/beta hydrolase fold CH48_1394 PF06794 Uncharacterised protein family (UPF0270) CH48_1395 PF00485 Phosphoribulokinase / Uridine kinase family CH48_1396 PF02566 OsmC-like protein CH48_1397 PF13545 Crp-like helix-turn-helix domain CH48_1397 PF00027 Cyclic nucleotide-binding domain CH48_1398 PF12805 FUSC-like inner membrane protein yccS CH48_1399 PF00202 Aminotransferase class-III CH48_14 PF01979 Amidohydrolase family CH48_140 PF00005 ABC transporter CH48_140 PF02687 FtsX-like permease family CH48_140 PF12704 MacB-like periplasmic core domain CH48_1400 PF00117 Glutamine amidotransferase class-I CH48_1401 PF05872 Bacterial protein of unknown function (DUF853) CH48_1402 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH48_1404 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH48_1404 PF02056 Family 4 glycosyl hydrolase CH48_1405 PF00356 Bacterial regulatory proteins, lacI family CH48_1406 PF07690 Major Facilitator Superfamily CH48_1407 PF07969 Amidohydrolase family CH48_1408 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH48_1408 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_1408 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH48_1408 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH48_1408 PF04324 BFD-like [2Fe-2S] binding domain CH48_1409 PF13806 Rieske-like [2Fe-2S] domain CH48_141 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_1410 PF01226 Formate/nitrite transporter CH48_1411 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_1411 PF14824 Sirohaem biosynthesis protein central CH48_1411 PF10414 Sirohaem synthase dimerisation region CH48_1412 PF00579 tRNA synthetases class I (W and Y) CH48_1413 PF13419 Haloacid dehalogenase-like hydrolase CH48_1414 PF00834 Ribulose-phosphate 3 epimerase family CH48_1415 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH48_1416 PF05036 Sporulation related domain CH48_1417 PF01761 3-dehydroquinate synthase CH48_1418 PF01202 Shikimate kinase CH48_1419 PF03958 Bacterial type II/III secretion system short domain CH48_1419 PF00263 Bacterial type II and III secretion system protein CH48_142 PF11398 Protein of unknown function (DUF2813) CH48_1424 PF00905 Penicillin binding protein transpeptidase domain CH48_1424 PF17092 Penicillin-binding protein OB-like domain CH48_1424 PF00912 Transglycosylase CH48_1425 PF00293 NUDIX domain CH48_1426 PF07095 Intracellular growth attenuator protein IgaA CH48_1427 PF13419 Haloacid dehalogenase-like hydrolase CH48_1428 PF01479 S4 domain CH48_1429 PF01430 Hsp33 protein CH48_143 PF04393 Protein of unknown function (DUF535) CH48_1430 PF01293 Phosphoenolpyruvate carboxykinase CH48_1432 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1432 PF00672 HAMP domain CH48_1432 PF00512 His Kinase A (phospho-acceptor) domain CH48_1433 PF00486 Transcriptional regulatory protein, C terminal CH48_1433 PF00072 Response regulator receiver domain CH48_1434 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_1434 PF03449 Transcription elongation factor, N-terminal CH48_1439 PF17674 HHH domain CH48_1439 PF16921 Tex protein YqgF-like domain CH48_1439 PF09371 Tex-like protein N-terminal domain CH48_1439 PF00575 S1 RNA binding domain CH48_144 PF03956 Lysine exporter LysO CH48_1440 PF04023 FeoA domain CH48_1441 PF02421 Ferrous iron transport protein B CH48_1441 PF07670 Nucleoside recognition CH48_1441 PF07664 Ferrous iron transport protein B C terminus CH48_1441 PF17910 FeoB cytosolic helical domain CH48_1442 PF09012 FeoC like transcriptional regulator CH48_1443 PF07338 Protein of unknown function (DUF1471) CH48_1444 PF00561 alpha/beta hydrolase fold CH48_1445 PF00156 Phosphoribosyl transferase domain CH48_1446 PF01521 Iron-sulphur cluster biosynthesis CH48_1446 PF01106 NifU-like domain CH48_1449 PF02446 4-alpha-glucanotransferase CH48_145 PF03063 Prismane/CO dehydrogenase family CH48_1450 PF00343 Carbohydrate phosphorylase CH48_1452 PF00343 Carbohydrate phosphorylase CH48_1453 PF00196 Bacterial regulatory proteins, luxR family CH48_1453 PF17874 MalT-like TPR region CH48_1455 PF00581 Rhodanese-like domain CH48_1456 PF01694 Rhomboid family CH48_1456 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH48_1457 PF00455 DeoR C terminal sensor domain CH48_1457 PF08220 DeoR-like helix-turn-helix domain CH48_1459 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH48_1459 PF01266 FAD dependent oxidoreductase CH48_146 PF00970 Oxidoreductase FAD-binding domain CH48_146 PF00175 Oxidoreductase NAD-binding domain CH48_146 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_1460 PF00343 Carbohydrate phosphorylase CH48_1461 PF00534 Glycosyl transferases group 1 CH48_1461 PF08323 Starch synthase catalytic domain CH48_1462 PF00483 Nucleotidyl transferase CH48_1463 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH48_1463 PF18390 Glycogen debranching enzyme C-terminal domain CH48_1463 PF00128 Alpha amylase, catalytic domain CH48_1464 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH48_1464 PF00128 Alpha amylase, catalytic domain CH48_1464 PF02806 Alpha amylase, C-terminal all-beta domain CH48_1465 PF03466 LysR substrate binding domain CH48_1465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1466 PF07694 5TMR of 5TMR-LYT CH48_1466 PF06580 Histidine kinase CH48_1467 PF03306 Alpha-acetolactate decarboxylase CH48_1468 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_1468 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_1468 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_1469 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_1469 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_147 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_147 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_147 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_1470 PF01914 MarC family integral membrane protein CH48_1471 PF01202 Shikimate kinase CH48_1472 PF02447 GntP family permease CH48_1473 PF00356 Bacterial regulatory proteins, lacI family CH48_1473 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_1474 PF02678 Pirin CH48_1474 PF17954 Quercetinase C-terminal cupin domain CH48_1475 PF00583 Acetyltransferase (GNAT) family CH48_1476 PF01261 Xylose isomerase-like TIM barrel CH48_1477 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_1477 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_1478 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_1478 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_1478 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_1479 PF00294 pfkB family carbohydrate kinase CH48_148 PF04072 Leucine carboxyl methyltransferase CH48_1481 PF04962 KduI/IolB family CH48_1482 PF00171 Aldehyde dehydrogenase family CH48_1483 PF07690 Major Facilitator Superfamily CH48_1484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1484 PF03466 LysR substrate binding domain CH48_1487 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH48_1488 PF05683 Fumarase C-terminus CH48_1488 PF05681 Fumarate hydratase (Fumerase) CH48_1489 PF03466 LysR substrate binding domain CH48_1489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_149 PF01212 Beta-eliminating lyase CH48_1490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_1490 PF10414 Sirohaem synthase dimerisation region CH48_1490 PF14824 Sirohaem biosynthesis protein central CH48_1491 PF00288 GHMP kinases N terminal domain CH48_1492 PF02310 B12 binding domain CH48_1493 PF13941 MutL protein CH48_1494 PF06368 Methylaspartate mutase E chain (MutE) CH48_1495 PF07476 Methylaspartate ammonia-lyase C-terminus CH48_1495 PF05034 Methylaspartate ammonia-lyase N-terminus CH48_1498 PF00375 Sodium:dicarboxylate symporter family CH48_15 PF06183 DinI-like family CH48_150 PF13460 NAD(P)H-binding CH48_150 PF11066 Protein of unknown function (DUF2867) CH48_1500 PF01384 Phosphate transporter family CH48_1501 PF10625 Universal stress protein B (UspB) CH48_1502 PF00582 Universal stress protein family CH48_1503 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH48_1503 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH48_1504 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH48_1504 PF00413 Matrixin CH48_1504 PF08548 Peptidase M10 serralysin C terminal CH48_1505 PF04445 Putative SAM-dependent methyltransferase CH48_1506 PF01432 Peptidase family M3 CH48_1507 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH48_1508 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_1508 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_1509 PF03797 Autotransporter beta-domain CH48_151 PF01370 NAD dependent epimerase/dehydratase family CH48_1510 PF03631 Virulence factor BrkB CH48_1511 PF02611 CDP-diacylglycerol pyrophosphatase CH48_1512 PF05170 AsmA family CH48_1513 PF00563 EAL domain CH48_1514 PF01361 Tautomerase enzyme CH48_1516 PF00294 pfkB family carbohydrate kinase CH48_1517 PF05193 Peptidase M16 inactive domain CH48_1517 PF00675 Insulinase (Peptidase family M16) CH48_1518 PF00375 Sodium:dicarboxylate symporter family CH48_152 PF12883 Protein of unknown function (DUF3828) CH48_1520 PF06917 Periplasmic pectate lyase CH48_1521 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH48_1522 PF00672 HAMP domain CH48_1522 PF17154 Gammaproteobacterial periplasmic sensor domain CH48_1522 PF00990 Diguanylate cyclase, GGDEF domain CH48_1522 PF00563 EAL domain CH48_1525 PF01270 Glycosyl hydrolases family 8 CH48_1526 PF03170 Bacterial cellulose synthase subunit CH48_1527 PF00535 Glycosyl transferase family 2 CH48_1527 PF07238 PilZ domain CH48_1527 PF03552 Cellulose synthase CH48_1528 PF06564 Cellulose biosynthesis protein BcsQ CH48_153 PF00005 ABC transporter CH48_1530 PF10995 Cellulose biosynthesis GIL CH48_1531 PF11120 Cellulose biosynthesis protein BcsF CH48_1532 PF11658 Cellulose biosynthesis protein BcsG CH48_1533 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_1533 PF00005 ABC transporter CH48_1534 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_1534 PF00005 ABC transporter CH48_1535 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_1535 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1536 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1537 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_1539 PF02566 OsmC-like protein CH48_154 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_1540 PF08019 Phosphoethanolamine transferase EptA/EptB CH48_1540 PF00884 Sulfatase CH48_1541 PF00072 Response regulator receiver domain CH48_1541 PF00196 Bacterial regulatory proteins, luxR family CH48_1542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1542 PF07730 Histidine kinase CH48_1542 PF05231 MASE1 CH48_1543 PF07690 Major Facilitator Superfamily CH48_1545 PF14436 Bacterial EndoU nuclease CH48_1545 PF05860 haemagglutination activity domain CH48_1545 PF04829 Pre-toxin domain with VENN motif CH48_1545 PF05594 Haemagluttinin repeat CH48_1545 PF13332 Hemagglutinin repeat CH48_1546 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_1546 PF17287 POTRA domain CH48_1546 PF08479 POTRA domain, ShlB-type CH48_1547 PF13332 Hemagglutinin repeat CH48_1547 PF13018 Extended Signal Peptide of Type V secretion system CH48_1547 PF04829 Pre-toxin domain with VENN motif CH48_1547 PF05860 haemagglutination activity domain CH48_1548 PF12146 Serine aminopeptidase, S33 CH48_1549 PF00872 Transposase, Mutator family CH48_155 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1550 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH48_1554 PF00356 Bacterial regulatory proteins, lacI family CH48_1555 PF00480 ROK family CH48_1556 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_1557 PF02378 Phosphotransferase system, EIIC CH48_1558 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_1559 PF02378 Phosphotransferase system, EIIC CH48_156 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1561 PF02264 LamB porin CH48_1563 PF00232 Glycosyl hydrolase family 1 CH48_1564 PF01238 Phosphomannose isomerase type I CH48_1566 PF13954 PapC N-terminal domain CH48_1566 PF00577 Outer membrane usher protein CH48_1566 PF13953 PapC C-terminal domain CH48_1568 PF17392 Urocanase C-terminal domain CH48_1568 PF01175 Urocanase Rossmann-like domain CH48_1568 PF17391 Urocanase N-terminal domain CH48_1569 PF00221 Aromatic amino acid lyase CH48_157 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_1570 PF00324 Amino acid permease CH48_1571 PF01695 IstB-like ATP binding protein CH48_1576 PF04606 Ogr/Delta-like zinc finger CH48_1578 PF00589 Phage integrase family CH48_1578 PF14659 Phage integrase, N-terminal SAM-like domain CH48_1578 PF13356 Arm DNA-binding domain CH48_158 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_1580 PF12833 Helix-turn-helix domain CH48_1581 PF02653 Branched-chain amino acid transport system / permease component CH48_1582 PF00005 ABC transporter CH48_1583 PF13407 Periplasmic binding protein domain CH48_1585 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_1585 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_1586 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_1586 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_1588 PF01757 Acyltransferase family CH48_159 PF10767 Protein of unknown function (DUF2593) CH48_1590 PF07690 Major Facilitator Superfamily CH48_1591 PF03144 Elongation factor Tu domain 2 CH48_1591 PF09106 Elongation factor SelB, winged helix CH48_1591 PF00009 Elongation factor Tu GTP binding domain CH48_1591 PF09107 Elongation factor SelB, winged helix CH48_1592 PF03841 L-seryl-tRNA selenium transferase CH48_1592 PF12390 Selenocysteine synthase N terminal CH48_1593 PF04216 Protein involved in formate dehydrogenase formation CH48_1594 PF01292 Prokaryotic cytochrome b561 CH48_1595 PF09163 Formate dehydrogenase N, transmembrane CH48_1595 PF13247 4Fe-4S dicluster domain CH48_1596 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_1596 PF00384 Molybdopterin oxidoreductase CH48_1596 PF01568 Molydopterin dinucleotide binding domain CH48_1597 PF01568 Molydopterin dinucleotide binding domain CH48_1597 PF00384 Molybdopterin oxidoreductase CH48_1597 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_1598 PF02634 FdhD/NarQ family CH48_1599 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH48_1599 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH48_16 PF13991 BssS protein family CH48_160 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_1600 PF00672 HAMP domain CH48_1600 PF02203 Tar ligand binding domain homologue CH48_1601 PF03473 MOSC domain CH48_1601 PF03475 3-alpha domain CH48_1602 PF01850 PIN domain CH48_1603 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CH48_1604 PF10928 Protein of unknown function (DUF2810) CH48_1605 PF00392 Bacterial regulatory proteins, gntR family CH48_1605 PF00155 Aminotransferase class I and II CH48_1606 PF05068 Mannitol repressor CH48_1608 PF01232 Mannitol dehydrogenase Rossmann domain CH48_1608 PF08125 Mannitol dehydrogenase C-terminal domain CH48_1609 PF02378 Phosphotransferase system, EIIC CH48_1609 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_1609 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_161 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1610 PF11254 Protein of unknown function (DUF3053) CH48_1611 PF05746 DALR anticodon binding domain CH48_1611 PF02092 Glycyl-tRNA synthetase beta subunit CH48_1612 PF02091 Glycyl-tRNA synthetase alpha subunit CH48_1613 PF03352 Methyladenine glycosylase CH48_1614 PF00583 Acetyltransferase (GNAT) family CH48_1619 PF07690 Major Facilitator Superfamily CH48_162 PF00005 ABC transporter CH48_162 PF08402 TOBE domain CH48_1620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_1620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_1621 PF00128 Alpha amylase, catalytic domain CH48_1622 PF00155 Aminotransferase class I and II CH48_1623 PF06826 Predicted Permease Membrane Region CH48_1623 PF02080 TrkA-C domain CH48_1625 PF00011 Hsp20/alpha crystallin family CH48_1626 PF00011 Hsp20/alpha crystallin family CH48_1627 PF07119 Protein of unknown function (DUF1375) CH48_1628 PF07676 WD40-like Beta Propeller Repeat CH48_1628 PF12566 Protein of unknown function (DUF3748) CH48_1629 PF00291 Pyridoxal-phosphate dependent enzyme CH48_163 PF13416 Bacterial extracellular solute-binding protein CH48_1630 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH48_1632 PF00204 DNA gyrase B CH48_1632 PF18053 DNA gyrase B subunit insert domain CH48_1632 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1632 PF01751 Toprim domain CH48_1632 PF00986 DNA gyrase B subunit, carboxyl terminus CH48_1633 PF02463 RecF/RecN/SMC N terminal domain CH48_1634 PF02767 DNA polymerase III beta subunit, central domain CH48_1634 PF02768 DNA polymerase III beta subunit, C-terminal domain CH48_1634 PF00712 DNA polymerase III beta subunit, N-terminal domain CH48_1635 PF00308 Bacterial dnaA protein CH48_1635 PF11638 DnaA N-terminal domain CH48_1635 PF08299 Bacterial dnaA protein helix-turn-helix CH48_1636 PF00468 Ribosomal protein L34 CH48_1637 PF00825 Ribonuclease P CH48_1638 PF01809 Putative membrane protein insertion efficiency factor CH48_1639 PF02096 60Kd inner membrane protein CH48_1639 PF14849 YidC periplasmic domain CH48_164 PF10722 Putative bacterial sensory transduction regulator CH48_1640 PF01926 50S ribosome-binding GTPase CH48_1640 PF12631 MnmE helical domain CH48_1640 PF10396 GTP-binding protein TrmE N-terminus CH48_1641 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH48_1641 PF07055 Enoyl reductase FAD binding domain CH48_1641 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH48_1643 PF09383 NIL domain CH48_1643 PF00005 ABC transporter CH48_1644 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1645 PF02203 Tar ligand binding domain homologue CH48_1645 PF00672 HAMP domain CH48_1645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_1646 PF03358 NADPH-dependent FMN reductase CH48_1647 PF00512 His Kinase A (phospho-acceptor) domain CH48_1647 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1648 PF00072 Response regulator receiver domain CH48_1648 PF00196 Bacterial regulatory proteins, luxR family CH48_165 PF07214 Protein of unknown function (DUF1418) CH48_1650 PF00860 Permease family CH48_1651 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1652 PF13419 Haloacid dehalogenase-like hydrolase CH48_1653 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1654 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_1656 PF01895 PhoU domain CH48_1657 PF00005 ABC transporter CH48_1658 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1659 PF00528 Binding-protein-dependent transport system inner membrane component CH48_166 PF00462 Glutaredoxin CH48_1660 PF12849 PBP superfamily domain CH48_1662 PF01380 SIS domain CH48_1663 PF12804 MobA-like NTP transferase domain CH48_1663 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_1664 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH48_1664 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH48_1665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_1665 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_1666 PF00231 ATP synthase CH48_1667 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_1667 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_1667 PF00306 ATP synthase alpha/beta chain, C terminal domain CH48_1668 PF00213 ATP synthase delta (OSCP) subunit CH48_1669 PF00430 ATP synthase B/B' CF(0) CH48_167 PF02080 TrkA-C domain CH48_167 PF06826 Predicted Permease Membrane Region CH48_1670 PF00137 ATP synthase subunit C CH48_1671 PF00119 ATP synthase A chain CH48_1672 PF03899 ATP synthase I chain CH48_1673 PF02527 rRNA small subunit methyltransferase G CH48_1674 PF13932 GidA associated domain CH48_1674 PF01134 Glucose inhibited division protein A CH48_1675 PF00258 Flavodoxin CH48_1676 PF01037 Lrp/AsnC ligand binding domain CH48_1677 PF03590 Aspartate-ammonia ligase CH48_1679 PF05762 VWA domain containing CoxE-like protein CH48_1680 PF12592 Protein of unknown function (DUF3763) CH48_1680 PF07728 AAA domain (dynein-related subfamily) CH48_1680 PF17868 AAA lid domain CH48_1681 PF02705 K+ potassium transporter CH48_1682 PF05025 RbsD / FucU transport protein family CH48_1683 PF00005 ABC transporter CH48_1684 PF02653 Branched-chain amino acid transport system / permease component CH48_1685 PF13407 Periplasmic binding protein domain CH48_1686 PF00294 pfkB family carbohydrate kinase CH48_1688 PF00356 Bacterial regulatory proteins, lacI family CH48_169 PF01569 PAP2 superfamily CH48_1690 PF00392 Bacterial regulatory proteins, gntR family CH48_1690 PF07729 FCD domain CH48_1697 PF13276 HTH-like domain CH48_1697 PF00665 Integrase core domain CH48_1697 PF13333 Integrase core domain CH48_1698 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH48_1699 PF12804 MobA-like NTP transferase domain CH48_17 PF01266 FAD dependent oxidoreductase CH48_170 PF01791 DeoC/LacD family aldolase CH48_1700 PF06288 Protein of unknown function (DUF1040) CH48_1701 PF01636 Phosphotransferase enzyme family CH48_1702 PF01323 DSBA-like thioredoxin domain CH48_1703 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH48_1703 PF00476 DNA polymerase family A CH48_1703 PF01612 3'-5' exonuclease CH48_1703 PF01367 5'-3' exonuclease, C-terminal SAM fold CH48_1704 PF01926 50S ribosome-binding GTPase CH48_1705 PF04220 Der GTPase activator (YihI) CH48_1706 PF04055 Radical SAM superfamily CH48_1706 PF06969 HemN C-terminal domain CH48_1707 PF00158 Sigma-54 interaction domain CH48_1707 PF00072 Response regulator receiver domain CH48_1707 PF02954 Bacterial regulatory protein, Fis family CH48_1708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1708 PF00512 His Kinase A (phospho-acceptor) domain CH48_1708 PF00989 PAS fold CH48_171 PF08220 DeoR-like helix-turn-helix domain CH48_171 PF00455 DeoR C terminal sensor domain CH48_1710 PF00120 Glutamine synthetase, catalytic domain CH48_1710 PF03951 Glutamine synthetase, beta-Grasp domain CH48_1712 PF13419 Haloacid dehalogenase-like hydrolase CH48_1713 PF03631 Virulence factor BrkB CH48_1714 PF02580 D-Tyr-tRNA(Tyr) deacylase CH48_1715 PF09500 Putative thioesterase (yiiD_Cterm) CH48_1715 PF00583 Acetyltransferase (GNAT) family CH48_1716 PF13693 Winged helix-turn-helix DNA-binding CH48_1719 PF05170 AsmA family CH48_1721 PF00860 Permease family CH48_1722 PF03616 Sodium/glutamate symporter CH48_1724 PF00270 DEAD/DEAH box helicase CH48_1724 PF00271 Helicase conserved C-terminal domain CH48_1724 PF17191 RecG wedge domain CH48_1725 PF12105 SpoU, rRNA methylase, C-terminal CH48_1725 PF00588 SpoU rRNA Methylase family CH48_1726 PF13291 ACT domain CH48_1726 PF02824 TGS domain CH48_1726 PF04607 Region found in RelA / SpoT proteins CH48_1727 PF01192 RNA polymerase Rpb6 CH48_1728 PF00625 Guanylate kinase CH48_173 PF03313 Serine dehydratase alpha chain CH48_173 PF03315 Serine dehydratase beta chain CH48_1731 PF03458 UPF0126 domain CH48_1733 PF07670 Nucleoside recognition CH48_1733 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_1733 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_1734 PF00378 Enoyl-CoA hydratase/isomerase CH48_1735 PF00563 EAL domain CH48_1735 PF00990 Diguanylate cyclase, GGDEF domain CH48_1735 PF13426 PAS domain CH48_1738 PF03755 YicC-like family, N-terminal region CH48_1738 PF08340 Domain of unknown function (DUF1732) CH48_1739 PF01138 3' exoribonuclease family, domain 1 CH48_1739 PF03725 3' exoribonuclease family, domain 2 CH48_1740 PF00156 Phosphoribosyl transferase domain CH48_1741 PF00440 Bacterial regulatory proteins, tetR family CH48_1742 PF00692 dUTPase CH48_1743 PF04127 DNA / pantothenate metabolism flavoprotein CH48_1743 PF02441 Flavoprotein CH48_1744 PF04002 RadC-like JAB domain CH48_1745 PF00830 Ribosomal L28 family CH48_1746 PF00471 Ribosomal protein L33 CH48_1747 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH48_1747 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH48_1747 PF06827 Zinc finger found in FPG and IleRS CH48_1748 PF01467 Cytidylyltransferase-like CH48_1749 PF00535 Glycosyl transferase family 2 CH48_1750 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH48_1751 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_1752 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH48_1753 PF01370 NAD dependent epimerase/dehydratase family CH48_1754 PF00155 Aminotransferase class I and II CH48_1755 PF08240 Alcohol dehydrogenase GroES-like domain CH48_1755 PF00107 Zinc-binding dehydrogenase CH48_1758 PF04748 Divergent polysaccharide deacetylase CH48_1759 PF01551 Peptidase family M23 CH48_176 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_176 PF07943 Penicillin-binding protein 5, C-terminal domain CH48_1760 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH48_1760 PF01676 Metalloenzyme superfamily CH48_1761 PF00581 Rhodanese-like domain CH48_1762 PF00462 Glutaredoxin CH48_1763 PF02556 Preprotein translocase subunit SecB CH48_1764 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH48_1764 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH48_1765 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_1765 PF06426 Serine acetyltransferase, N-terminal CH48_1766 PF00588 SpoU rRNA Methylase family CH48_1767 PF12833 Helix-turn-helix domain CH48_1767 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH48_1767 PF02805 Metal binding domain of Ada CH48_1767 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_1768 PF16527 Two-component sensor protein CpxA, periplasmic domain CH48_1768 PF00672 HAMP domain CH48_1768 PF00512 His Kinase A (phospho-acceptor) domain CH48_1768 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_1769 PF00486 Transcriptional regulatory protein, C terminal CH48_1769 PF00072 Response regulator receiver domain CH48_177 PF00291 Pyridoxal-phosphate dependent enzyme CH48_177 PF00571 CBS domain CH48_1770 PF07813 LTXXQ motif family protein CH48_1771 PF16916 Dimerisation domain of Zinc Transporter CH48_1771 PF01545 Cation efflux family CH48_1772 PF00365 Phosphofructokinase CH48_1775 PF00121 Triosephosphate isomerase CH48_1776 PF07305 Protein of unknown function (DUF1454) CH48_1777 PF05656 Protein of unknown function (DUF805) CH48_1778 PF00175 Oxidoreductase NAD-binding domain CH48_1778 PF00970 Oxidoreductase FAD-binding domain CH48_178 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_1781 PF07690 Major Facilitator Superfamily CH48_1782 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH48_1783 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_1783 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_1784 PF00230 Major intrinsic protein CH48_1785 PF06005 Cell division protein ZapB CH48_1786 PF03737 Aldolase/RraA CH48_1787 PF01040 UbiA prenyltransferase family CH48_1788 PF07724 AAA domain (Cdc48 subfamily) CH48_1788 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_1788 PF00004 ATPase family associated with various cellular activities (AAA) CH48_1789 PF00227 Proteasome subunit CH48_179 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1790 PF05036 Sporulation related domain CH48_1791 PF00356 Bacterial regulatory proteins, lacI family CH48_1792 PF00271 Helicase conserved C-terminal domain CH48_1792 PF00270 DEAD/DEAH box helicase CH48_1792 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH48_1792 PF18074 Primosomal protein N C-terminal domain CH48_1792 PF17764 3′ DNA-binding domain (3′BD) CH48_1793 PF01197 Ribosomal protein L31 CH48_1794 PF01340 Met Apo-repressor, MetJ CH48_1795 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_1796 PF00696 Amino acid kinase family CH48_1796 PF03447 Homoserine dehydrogenase, NAD binding domain CH48_1796 PF00742 Homoserine dehydrogenase CH48_1797 PF02219 Methylenetetrahydrofolate reductase CH48_1798 PF00311 Phosphoenolpyruvate carboxylase CH48_1799 PF07687 Peptidase dimerisation domain CH48_1799 PF01546 Peptidase family M20/M25/M40 CH48_18 PF00196 Bacterial regulatory proteins, luxR family CH48_180 PF09383 NIL domain CH48_180 PF00005 ABC transporter CH48_1800 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_1800 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_1801 PF00696 Amino acid kinase family CH48_1802 PF14698 Argininosuccinate lyase C-terminal CH48_1802 PF00206 Lyase CH48_1803 PF00593 TonB dependent receptor CH48_1803 PF07715 TonB-dependent Receptor Plug Domain CH48_1807 PF00005 ABC transporter CH48_1807 PF00664 ABC transporter transmembrane region CH48_1808 PF00529 HlyD membrane-fusion protein of T1SS CH48_181 PF03180 NLPA lipoprotein CH48_1810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_1810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_1811 PF00462 Glutaredoxin CH48_1811 PF08534 Redoxin CH48_1812 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_1812 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_1813 PF03466 LysR substrate binding domain CH48_1813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1814 PF00440 Bacterial regulatory proteins, tetR family CH48_1815 PF07226 Protein of unknown function (DUF1422) CH48_1817 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_1818 PF07715 TonB-dependent Receptor Plug Domain CH48_1818 PF00593 TonB dependent receptor CH48_1819 PF01177 Asp/Glu/Hydantoin racemase CH48_1828 PF13407 Periplasmic binding protein domain CH48_1829 PF00005 ABC transporter CH48_1830 PF02653 Branched-chain amino acid transport system / permease component CH48_1831 PF03466 LysR substrate binding domain CH48_1831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1832 PF02653 Branched-chain amino acid transport system / permease component CH48_1833 PF04219 Protein of unknown function, DUF CH48_1834 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH48_1834 PF01078 Magnesium chelatase, subunit ChlI CH48_1835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_1835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_1835 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_1837 PF01063 Amino-transferase class IV CH48_1838 PF00920 Dehydratase family CH48_1839 PF00291 Pyridoxal-phosphate dependent enzyme CH48_1839 PF00585 C-terminal regulatory domain of Threonine dehydratase CH48_1842 PF03466 LysR substrate binding domain CH48_1842 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1844 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH48_1844 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH48_1845 PF06958 S-type Pyocin CH48_1846 PF01320 Colicin immunity protein / pyocin immunity protein CH48_1847 PF01320 Colicin immunity protein / pyocin immunity protein CH48_1849 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_1849 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_185 PF00043 Glutathione S-transferase, C-terminal domain CH48_185 PF13417 Glutathione S-transferase, N-terminal domain CH48_1851 PF00577 Outer membrane usher protein CH48_1851 PF13953 PapC C-terminal domain CH48_1851 PF13954 PapC N-terminal domain CH48_1852 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_1852 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_1855 PF13361 UvrD-like helicase C-terminal domain CH48_1855 PF00580 UvrD/REP helicase N-terminal domain CH48_1856 PF00295 Glycosyl hydrolases family 28 CH48_1857 PF02541 Ppx/GppA phosphatase family CH48_1858 PF00270 DEAD/DEAH box helicase CH48_1858 PF00271 Helicase conserved C-terminal domain CH48_1859 PF00085 Thioredoxin CH48_186 PF00593 TonB dependent receptor CH48_186 PF07715 TonB-dependent Receptor Plug Domain CH48_1860 PF07497 Rho termination factor, RNA-binding domain CH48_1860 PF07498 Rho termination factor, N-terminal domain CH48_1860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_1862 PF00953 Glycosyl transferase family 4 CH48_1863 PF02706 Chain length determinant protein CH48_1864 PF02350 UDP-N-acetylglucosamine 2-epimerase CH48_1865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH48_1865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH48_1865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH48_1866 PF16363 GDP-mannose 4,6 dehydratase CH48_1867 PF00483 Nucleotidyl transferase CH48_1869 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_187 PF00005 ABC transporter CH48_1870 PF01943 Polysaccharide biosynthesis protein CH48_1871 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH48_1872 PF06899 WzyE protein, O-antigen assembly polymerase CH48_1873 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH48_1874 PF00324 Amino acid permease CH48_188 PF01032 FecCD transport family CH48_1881 PF07219 HemY protein N-terminus CH48_1881 PF07719 Tetratricopeptide repeat CH48_1882 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH48_1883 PF02602 Uroporphyrinogen-III synthase HemD CH48_1884 PF03900 Porphobilinogen deaminase, C-terminal domain CH48_1884 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH48_1885 PF01295 Adenylate cyclase, class-I CH48_1885 PF12633 Adenylate cyclase NT domain CH48_1886 PF01491 Frataxin-like domain CH48_1887 PF13627 Prokaryotic lipoprotein-attachment site CH48_1888 PF01678 Diaminopimelate epimerase CH48_1889 PF04340 Protein of unknown function, DUF484 CH48_189 PF00324 Amino acid permease CH48_1890 PF00589 Phage integrase family CH48_1890 PF02899 Phage integrase, N-terminal SAM-like domain CH48_1891 PF13419 Haloacid dehalogenase-like hydrolase CH48_1892 PF13361 UvrD-like helicase C-terminal domain CH48_1892 PF00580 UvrD/REP helicase N-terminal domain CH48_1895 PF09370 Phosphoenolpyruvate hydrolase-like CH48_1896 PF01544 CorA-like Mg2+ transporter protein CH48_1897 PF00892 EamA-like transporter family CH48_1898 PF03061 Thioesterase superfamily CH48_1899 PF02253 Phospholipase A1 CH48_19 PF01594 AI-2E family transporter CH48_190 PF03466 LysR substrate binding domain CH48_190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1900 PF00271 Helicase conserved C-terminal domain CH48_1900 PF16124 RecQ zinc-binding CH48_1900 PF09382 RQC domain CH48_1900 PF00270 DEAD/DEAH box helicase CH48_1900 PF00570 HRDC domain CH48_1901 PF01810 LysE type translocator CH48_1902 PF01810 LysE type translocator CH48_1903 PF12146 Serine aminopeptidase, S33 CH48_1905 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_1906 PF07690 Major Facilitator Superfamily CH48_1907 PF01266 FAD dependent oxidoreductase CH48_1907 PF04324 BFD-like [2Fe-2S] binding domain CH48_1908 PF00890 FAD binding domain CH48_1909 PF02754 Cysteine-rich domain CH48_1909 PF13183 4Fe-4S dicluster domain CH48_1910 PF08786 DcrB CH48_1911 PF02592 Putative vitamin uptake transporter CH48_1912 PF01206 Sulfurtransferase TusA CH48_1913 PF00403 Heavy-metal-associated domain CH48_1915 PF07947 YhhN family CH48_1918 PF06611 Protein of unknown function (DUF1145) CH48_1920 PF02881 SRP54-type protein, helical bundle domain CH48_1920 PF00448 SRP54-type protein, GTPase domain CH48_1921 PF00005 ABC transporter CH48_1922 PF18075 FtsX extracellular domain CH48_1922 PF02687 FtsX-like permease family CH48_1923 PF04542 Sigma-70 region 2 CH48_1923 PF04545 Sigma-70, region 4 CH48_1923 PF00140 Sigma-70 factor, region 1.2 CH48_1926 PF12568 Acetyltransferase (GNAT) domain, PanZ CH48_1927 PF13458 Periplasmic binding protein CH48_1928 PF02653 Branched-chain amino acid transport system / permease component CH48_1929 PF02653 Branched-chain amino acid transport system / permease component CH48_1929 PF11862 Domain of unknown function (DUF3382) CH48_1930 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH48_1930 PF00005 ABC transporter CH48_1931 PF00005 ABC transporter CH48_1938 PF13416 Bacterial extracellular solute-binding protein CH48_1939 PF00528 Binding-protein-dependent transport system inner membrane component CH48_194 PF03601 Conserved hypothetical protein 698 CH48_1940 PF00528 Binding-protein-dependent transport system inner membrane component CH48_1941 PF00005 ABC transporter CH48_1941 PF17912 MalK OB fold domain CH48_1942 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_1943 PF03547 Membrane transport protein CH48_1944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_1944 PF03466 LysR substrate binding domain CH48_1945 PF00892 EamA-like transporter family CH48_1946 PF08267 Cobalamin-independent synthase, N-terminal domain CH48_1946 PF01717 Cobalamin-independent synthase, Catalytic domain CH48_1947 PF01738 Dienelactone hydrolase family CH48_1948 PF01048 Phosphorylase superfamily CH48_195 PF01261 Xylose isomerase-like TIM barrel CH48_1951 PF13722 5TM C-terminal transporter carbon starvation CstA CH48_1951 PF02554 Carbon starvation protein CstA CH48_1952 PF09335 SNARE associated Golgi protein CH48_1953 PF02646 RmuC family CH48_1954 PF01209 ubiE/COQ5 methyltransferase family CH48_1955 PF02036 SCP-2 sterol transfer family CH48_1956 PF03109 ABC1 family CH48_1957 PF02416 mttA/Hcf106 family CH48_1959 PF00902 Sec-independent protein translocase protein (TatC) CH48_196 PF00577 Outer membrane usher protein CH48_196 PF13954 PapC N-terminal domain CH48_196 PF13953 PapC C-terminal domain CH48_1960 PF01026 TatD related DNase CH48_1961 PF00490 Delta-aminolevulinic acid dehydratase CH48_1962 PF02357 Transcription termination factor nusG CH48_1963 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH48_1964 PF00970 Oxidoreductase FAD-binding domain CH48_1964 PF00175 Oxidoreductase NAD-binding domain CH48_1965 PF02803 Thiolase, C-terminal domain CH48_1965 PF00108 Thiolase, N-terminal domain CH48_1966 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH48_1966 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH48_1966 PF00378 Enoyl-CoA hydratase/isomerase CH48_1968 PF00557 Metallopeptidase family M24 CH48_1969 PF01205 Uncharacterized protein family UPF0029 CH48_1969 PF09186 Domain of unknown function (DUF1949) CH48_197 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_197 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_1970 PF02386 Cation transport protein CH48_1971 PF12724 Flavodoxin domain CH48_1978 PF02371 Transposase IS116/IS110/IS902 family CH48_1978 PF01548 Transposase CH48_1979 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH48_1979 PF01565 FAD binding domain CH48_1980 PF08279 HTH domain CH48_1980 PF02237 Biotin protein ligase C terminal domain CH48_1980 PF03099 Biotin/lipoate A/B protein ligase family CH48_1981 PF00485 Phosphoribulokinase / Uridine kinase family CH48_1982 PF13673 Acetyltransferase (GNAT) domain CH48_1987 PF00009 Elongation factor Tu GTP binding domain CH48_1987 PF03143 Elongation factor Tu C-terminal domain CH48_1987 PF03144 Elongation factor Tu domain 2 CH48_1988 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH48_1989 PF00467 KOW motif CH48_1989 PF02357 Transcription termination factor nusG CH48_199 PF17550 Family of unknown function CH48_1990 PF03946 Ribosomal protein L11, N-terminal domain CH48_1990 PF00298 Ribosomal protein L11, RNA binding domain CH48_1991 PF00687 Ribosomal protein L1p/L10e family CH48_1992 PF00466 Ribosomal protein L10 CH48_1993 PF16320 Ribosomal protein L7/L12 dimerisation domain CH48_1993 PF00542 Ribosomal protein L7/L12 C-terminal domain CH48_1994 PF10385 RNA polymerase beta subunit external 1 domain CH48_1994 PF04560 RNA polymerase Rpb2, domain 7 CH48_1994 PF00562 RNA polymerase Rpb2, domain 6 CH48_1994 PF04563 RNA polymerase beta subunit CH48_1994 PF04561 RNA polymerase Rpb2, domain 2 CH48_1994 PF04565 RNA polymerase Rpb2, domain 3 CH48_1995 PF04998 RNA polymerase Rpb1, domain 5 CH48_1995 PF04983 RNA polymerase Rpb1, domain 3 CH48_1995 PF00623 RNA polymerase Rpb1, domain 2 CH48_1995 PF04997 RNA polymerase Rpb1, domain 1 CH48_1995 PF05000 RNA polymerase Rpb1, domain 4 CH48_1997 PF06968 Biotin and Thiamin Synthesis associated domain CH48_1997 PF04055 Radical SAM superfamily CH48_1998 PF05690 Thiazole biosynthesis protein ThiG CH48_1999 PF02597 ThiS family CH48_2 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_2 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_200 PF00486 Transcriptional regulatory protein, C terminal CH48_2000 PF00899 ThiF family CH48_2001 PF02581 Thiamine monophosphate synthase CH48_2002 PF01964 Radical SAM ThiC family CH48_2002 PF13667 ThiC-associated domain CH48_2003 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH48_2004 PF00293 NUDIX domain CH48_2004 PF09297 NADH pyrophosphatase zinc ribbon domain CH48_2005 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH48_2006 PF04493 Endonuclease V CH48_2007 PF04222 Protein of unknown function (DUF416) CH48_2008 PF00216 Bacterial DNA-binding protein CH48_2009 PF07356 Protein of unknown function (DUF1481) CH48_201 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_201 PF02378 Phosphotransferase system, EIIC CH48_2010 PF02843 Phosphoribosylglycinamide synthetase, C domain CH48_2010 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH48_2010 PF02844 Phosphoribosylglycinamide synthetase, N domain CH48_2011 PF01808 AICARFT/IMPCHase bienzyme CH48_2011 PF02142 MGS-like domain CH48_202 PF00294 pfkB family carbohydrate kinase CH48_2020 PF02371 Transposase IS116/IS110/IS902 family CH48_2020 PF01548 Transposase CH48_2021 PF04204 Homoserine O-succinyltransferase CH48_2022 PF01274 Malate synthase CH48_2023 PF00463 Isocitrate lyase family CH48_2024 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH48_2025 PF09339 IclR helix-turn-helix domain CH48_2025 PF01614 Bacterial transcriptional regulator CH48_2026 PF02574 Homocysteine S-methyltransferase CH48_2026 PF02310 B12 binding domain CH48_2026 PF02607 B12 binding domain CH48_2026 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH48_2026 PF00809 Pterin binding enzyme CH48_2027 PF13332 Hemagglutinin repeat CH48_2027 PF05860 haemagglutination activity domain CH48_2028 PF08479 POTRA domain, ShlB-type CH48_2028 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_2028 PF17287 POTRA domain CH48_2029 PF01758 Sodium Bile acid symporter family CH48_203 PF00381 PTS HPr component phosphorylation site CH48_203 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_2030 PF01842 ACT domain CH48_2030 PF00696 Amino acid kinase family CH48_2031 PF00342 Phosphoglucose isomerase CH48_2032 PF06146 Phosphate-starvation-inducible E CH48_2033 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2034 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2034 PF14785 Maltose transport system permease protein MalF P2 domain CH48_2035 PF01547 Bacterial extracellular solute-binding protein CH48_2036 PF17912 MalK OB fold domain CH48_2036 PF00005 ABC transporter CH48_2037 PF02264 LamB porin CH48_2038 PF07148 Maltose operon periplasmic protein precursor (MalM) CH48_204 PF13344 Haloacid dehalogenase-like hydrolase CH48_204 PF00293 NUDIX domain CH48_2040 PF04345 Chorismate lyase CH48_2041 PF01040 UbiA prenyltransferase family CH48_2042 PF01553 Acyltransferase CH48_2043 PF01219 Prokaryotic diacylglycerol kinase CH48_2044 PF01726 LexA DNA binding domain CH48_2044 PF00717 Peptidase S24-like CH48_2045 PF05532 CsbD-like CH48_2046 PF01475 Ferric uptake regulator family CH48_2047 PF01757 Acyltransferase family CH48_2048 PF01207 Dihydrouridine synthase (Dus) CH48_2049 PF09583 Phage shock protein G (Phageshock_PspG) CH48_205 PF03264 NapC/NirT cytochrome c family, N-terminal region CH48_2051 PF08240 Alcohol dehydrogenase GroES-like domain CH48_2051 PF00107 Zinc-binding dehydrogenase CH48_2052 PF03796 DnaB-like helicase C terminal domain CH48_2052 PF00772 DnaB-like helicase N terminal domain CH48_2053 PF00842 Alanine racemase, C-terminal domain CH48_2053 PF01168 Alanine racemase, N-terminal domain CH48_2054 PF00155 Aminotransferase class I and II CH48_2056 PF04237 YjbR CH48_2057 PF00005 ABC transporter CH48_2057 PF17755 UvrA DNA-binding domain CH48_2057 PF17760 UvrA interaction domain CH48_2058 PF00436 Single-strand binding protein family CH48_2059 PF07804 HipA-like C-terminal domain CH48_2059 PF13657 HipA N-terminal domain CH48_206 PF18364 Molybdopterin oxidoreductase N-terminal domain CH48_206 PF00384 Molybdopterin oxidoreductase CH48_206 PF01568 Molydopterin dinucleotide binding domain CH48_2062 PF00860 Permease family CH48_2063 PF00999 Sodium/hydrogen exchanger family CH48_2064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2064 PF03466 LysR substrate binding domain CH48_2065 PF03788 LrgA family CH48_2067 PF00005 ABC transporter CH48_2068 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2069 PF00528 Binding-protein-dependent transport system inner membrane component CH48_207 PF03692 Putative zinc- or iron-chelating domain CH48_2070 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_2072 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_2073 PF00939 Sodium:sulfate symporter transmembrane region CH48_2074 PF00313 'Cold-shock' DNA-binding domain CH48_2075 PF00313 'Cold-shock' DNA-binding domain CH48_2076 PF05433 Glycine zipper 2TM domain CH48_2077 PF00990 Diguanylate cyclase, GGDEF domain CH48_2077 PF00072 Response regulator receiver domain CH48_2078 PF02954 Bacterial regulatory protein, Fis family CH48_2079 PF01207 Dihydrouridine synthase (Dus) CH48_208 PF03222 Tryptophan/tyrosine permease family CH48_2082 PF00474 Sodium:solute symporter family CH48_2083 PF06196 Protein of unknown function (DUF997) CH48_2084 PF02785 Biotin carboxylase C-terminal domain CH48_2084 PF00289 Biotin carboxylase, N-terminal domain CH48_2084 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH48_2085 PF00364 Biotin-requiring enzyme CH48_2086 PF01220 Dehydroquinase class II CH48_2087 PF01794 Ferric reductase like transmembrane component CH48_2088 PF00174 Oxidoreductase molybdopterin binding domain CH48_2089 PF00107 Zinc-binding dehydrogenase CH48_2089 PF08240 Alcohol dehydrogenase GroES-like domain CH48_209 PF08207 Elongation factor P (EF-P) KOW-like domain CH48_209 PF01132 Elongation factor P (EF-P) OB domain CH48_209 PF09285 Elongation factor P, C-terminal CH48_2091 PF00990 Diguanylate cyclase, GGDEF domain CH48_2091 PF17157 Gammaproteobacterial periplasmic sensor domain CH48_2091 PF00563 EAL domain CH48_2093 PF04085 rod shape-determining protein MreC CH48_2094 PF04093 rod shape-determining protein MreD CH48_2095 PF02545 Maf-like protein CH48_2096 PF10150 Ribonuclease E/G family CH48_2096 PF00575 S1 RNA binding domain CH48_2097 PF13502 AsmA-like C-terminal region CH48_2097 PF13116 Protein of unknown function CH48_2098 PF00795 Carbon-nitrogen hydrolase CH48_2099 PF01523 Putative modulator of DNA gyrase CH48_210 PF03786 D-mannonate dehydratase (UxuA) CH48_2103 PF18807 Tripartite Tc toxins repeat CH48_2103 PF14431 YwqJ-like deaminase CH48_2104 PF18807 Tripartite Tc toxins repeat CH48_2104 PF05785 Rho-activating domain of cytotoxic necrotizing factor CH48_2108 PF12255 Insecticide toxin TcdB middle/C-terminal region CH48_2108 PF03534 Salmonella virulence plasmid 65kDa B protein CH48_2108 PF12256 Insecticide toxin TcdB middle/N-terminal region CH48_2109 PF12256 Insecticide toxin TcdB middle/N-terminal region CH48_2109 PF12255 Insecticide toxin TcdB middle/C-terminal region CH48_2109 PF03534 Salmonella virulence plasmid 65kDa B protein CH48_211 PF08125 Mannitol dehydrogenase C-terminal domain CH48_211 PF01232 Mannitol dehydrogenase Rossmann domain CH48_2113 PF03466 LysR substrate binding domain CH48_2113 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2114 PF03466 LysR substrate binding domain CH48_2115 PF07869 Protein of unknown function (DUF1656) CH48_2116 PF13533 Biotin-lipoyl like CH48_2117 PF04632 Fusaric acid resistance protein family CH48_2118 PF00171 Aldehyde dehydrogenase family CH48_212 PF07729 FCD domain CH48_212 PF00392 Bacterial regulatory proteins, gntR family CH48_2120 PF01337 Barstar (barnase inhibitor) CH48_2121 PF04751 Protein of unknown function (DUF615) CH48_2122 PF01523 Putative modulator of DNA gyrase CH48_2124 PF07361 Cytochrome b562 CH48_2125 PF14760 Rnk N-terminus CH48_2125 PF01272 Transcription elongation factor, GreA/GreB, C-term CH48_2131 PF01979 Amidohydrolase family CH48_2132 PF03841 L-seryl-tRNA selenium transferase CH48_2133 PF07071 KDGP aldolase CH48_2134 PF10282 Lactonase, 7-bladed beta-propeller CH48_2135 PF05043 Mga helix-turn-helix domain CH48_2135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_2135 PF08279 HTH domain CH48_2135 PF00874 PRD domain CH48_2136 PF01381 Helix-turn-helix CH48_2137 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CH48_2138 PF00690 Cation transporter/ATPase, N-terminus CH48_2138 PF00689 Cation transporting ATPase, C-terminus CH48_214 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_214 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH48_2140 PF00356 Bacterial regulatory proteins, lacI family CH48_2141 PF00367 phosphotransferase system, EIIB CH48_2141 PF02378 Phosphotransferase system, EIIC CH48_2142 PF11941 Domain of unknown function (DUF3459) CH48_2142 PF00128 Alpha amylase, catalytic domain CH48_2145 PF04168 A predicted alpha-helical domain with a conserved ER motif. CH48_2145 PF14403 Circularly permuted ATP-grasp type 2 CH48_2146 PF14403 Circularly permuted ATP-grasp type 2 CH48_2147 PF01042 Endoribonuclease L-PSP CH48_2148 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH48_2148 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH48_2149 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH48_2149 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH48_215 PF01569 PAP2 superfamily CH48_2151 PF00381 PTS HPr component phosphorylation site CH48_2152 PF03668 P-loop ATPase protein family CH48_2153 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_2154 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH48_2155 PF04552 Sigma-54, DNA binding domain CH48_2155 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH48_2155 PF04963 Sigma-54 factor, core binding domain CH48_2156 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH48_2156 PF00005 ABC transporter CH48_2157 PF03968 OstA-like protein CH48_2158 PF06835 Lipopolysaccharide-assembly, LptC-related CH48_216 PF00877 NlpC/P60 family CH48_2160 PF00571 CBS domain CH48_2160 PF01380 SIS domain CH48_2161 PF01699 Sodium/calcium exchanger protein CH48_2162 PF00005 ABC transporter CH48_2163 PF02405 Permease MlaE CH48_2164 PF02470 MlaD protein CH48_2165 PF05494 MlaC protein CH48_2166 PF13466 STAS domain CH48_2167 PF01722 BolA-like protein CH48_2168 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH48_2169 PF13180 PDZ domain CH48_217 PF12792 CSS motif domain associated with EAL CH48_217 PF00563 EAL domain CH48_2170 PF00595 PDZ domain CH48_2170 PF13180 PDZ domain CH48_2171 PF06295 Protein of unknown function (DUF1043) CH48_2172 PF03969 AFG1-like ATPase CH48_2173 PF00572 Ribosomal protein L13 CH48_2174 PF00380 Ribosomal protein S9/S16 CH48_2175 PF02798 Glutathione S-transferase, N-terminal domain CH48_2175 PF00043 Glutathione S-transferase, C-terminal domain CH48_2176 PF04386 Stringent starvation protein B CH48_2178 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH48_2178 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_2179 PF00310 Glutamine amidotransferases class-II CH48_2179 PF04898 Glutamate synthase central domain CH48_2179 PF01645 Conserved region in glutamate synthase CH48_2179 PF01493 GXGXG motif CH48_218 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_2180 PF16199 Radical_SAM C-terminal domain CH48_2180 PF04055 Radical SAM superfamily CH48_2181 PF01627 Hpt domain CH48_2181 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH48_2181 PF00989 PAS fold CH48_2181 PF00072 Response regulator receiver domain CH48_2181 PF00512 His Kinase A (phospho-acceptor) domain CH48_2181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2183 PF00912 Transglycosylase CH48_2184 PF04972 BON domain CH48_2185 PF13580 SIS domain CH48_2186 PF02021 Uncharacterised protein family UPF0102 CH48_2187 PF04348 LppC putative lipoprotein CH48_2188 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_219 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2190 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_2190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_2191 PF13953 PapC C-terminal domain CH48_2191 PF13954 PapC N-terminal domain CH48_2191 PF00577 Outer membrane usher protein CH48_2193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2193 PF03466 LysR substrate binding domain CH48_2194 PF00248 Aldo/keto reductase family CH48_2195 PF08240 Alcohol dehydrogenase GroES-like domain CH48_2195 PF00107 Zinc-binding dehydrogenase CH48_2196 PF02678 Pirin CH48_2196 PF17954 Quercetinase C-terminal cupin domain CH48_2197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2197 PF03466 LysR substrate binding domain CH48_2198 PF13409 Glutathione S-transferase, N-terminal domain CH48_2199 PF07681 DoxX CH48_22 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_22 PF00384 Molybdopterin oxidoreductase CH48_22 PF01568 Molydopterin dinucleotide binding domain CH48_220 PF00528 Binding-protein-dependent transport system inner membrane component CH48_220 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_2200 PF13997 YqjK-like protein CH48_2201 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH48_2202 PF05957 Bacterial protein of unknown function (DUF883) CH48_2204 PF13721 SecD export protein N-terminal TM region CH48_2205 PF09335 SNARE associated Golgi protein CH48_2207 PF07729 FCD domain CH48_2207 PF00392 Bacterial regulatory proteins, gntR family CH48_2208 PF07690 Major Facilitator Superfamily CH48_2209 PF02614 Glucuronate isomerase CH48_221 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_221 PF00005 ABC transporter CH48_2210 PF01232 Mannitol dehydrogenase Rossmann domain CH48_2210 PF08125 Mannitol dehydrogenase C-terminal domain CH48_2211 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH48_2211 PF08666 SAF domain CH48_2212 PF10688 Bacterial inner membrane protein CH48_2213 PF00375 Sodium:dicarboxylate symporter family CH48_2214 PF03741 Integral membrane protein TerC family CH48_2215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_2216 PF01863 Protein of unknown function DUF45 CH48_2218 PF03797 Autotransporter beta-domain CH48_2219 PF05175 Methyltransferase small domain CH48_222 PF13989 YejG-like protein CH48_2221 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_2221 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH48_2222 PF00892 EamA-like transporter family CH48_2223 PF03729 Short repeat of unknown function (DUF308) CH48_2225 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH48_2226 PF13520 Amino acid permease CH48_2227 PF04960 Glutaminase CH48_2228 PF02378 Phosphotransferase system, EIIC CH48_2228 PF00367 phosphotransferase system, EIIB CH48_2229 PF13580 SIS domain CH48_223 PF07690 Major Facilitator Superfamily CH48_2230 PF01418 Helix-turn-helix domain, rpiR family CH48_2230 PF01380 SIS domain CH48_2231 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH48_2231 PF00933 Glycosyl hydrolase family 3 N terminal domain CH48_2233 PF07075 Protein of unknown function (DUF1343) CH48_2236 PF04545 Sigma-70, region 4 CH48_2236 PF04539 Sigma-70 region 3 CH48_2236 PF04542 Sigma-70 region 2 CH48_2236 PF04546 Sigma-70, non-essential region CH48_2236 PF00140 Sigma-70 factor, region 1.2 CH48_2236 PF03979 Sigma-70 factor, region 1.1 CH48_2237 PF08278 DNA primase DnaG DnaB-binding CH48_2237 PF10410 DnaB-helicase binding domain of primase CH48_2237 PF08275 DNA primase catalytic core, N-terminal domain CH48_2237 PF01807 CHC2 zinc finger CH48_2238 PF01165 Ribosomal protein S21 CH48_2239 PF00814 Glycoprotease family CH48_224 PF00849 RNA pseudouridylate synthase CH48_224 PF01479 S4 domain CH48_2240 PF02660 Glycerol-3-phosphate acyltransferase CH48_2241 PF02152 Dihydroneopterin aldolase CH48_2242 PF02673 Bacitracin resistance protein BacA CH48_2243 PF01743 Poly A polymerase head domain CH48_2243 PF12627 Probable RNA and SrmB- binding site of polymerase A CH48_2243 PF01966 HD domain CH48_2244 PF08239 Bacterial SH3 domain CH48_2245 PF01928 CYTH domain CH48_2246 PF03710 Glutamate-ammonia ligase adenylyltransferase CH48_2246 PF08335 GlnD PII-uridylyltransferase CH48_2247 PF00294 pfkB family carbohydrate kinase CH48_2247 PF01467 Cytidylyltransferase-like CH48_2248 PF13520 Amino acid permease CH48_2249 PF04380 Membrane fusogenic activity CH48_225 PF04851 Type III restriction enzyme, res subunit CH48_225 PF00271 Helicase conserved C-terminal domain CH48_2250 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH48_2251 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH48_2252 PF03738 Glutathionylspermidine synthase preATP-grasp CH48_2253 PF06693 Protein of unknown function (DUF1190) CH48_2254 PF02321 Outer membrane efflux protein CH48_2255 PF00293 NUDIX domain CH48_2256 PF06853 Protein of unknown function (DUF1249) CH48_2257 PF00149 Calcineurin-like phosphoesterase CH48_2258 PF05728 Uncharacterised protein family (UPF0227) CH48_2259 PF00204 DNA gyrase B CH48_2259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2259 PF00986 DNA gyrase B subunit, carboxyl terminus CH48_2259 PF01751 Toprim domain CH48_226 PF01386 Ribosomal L25p family CH48_2260 PF03466 LysR substrate binding domain CH48_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2261 PF03992 Antibiotic biosynthesis monooxygenase CH48_2262 PF02525 Flavodoxin-like fold CH48_2263 PF00521 DNA gyrase/topoisomerase IV, subunit A CH48_2263 PF03989 DNA gyrase C-terminal domain, beta-propeller CH48_2264 PF01553 Acyltransferase CH48_2265 PF07732 Multicopper oxidase CH48_2265 PF07731 Multicopper oxidase CH48_2266 PF04055 Radical SAM superfamily CH48_2266 PF11842 Domain of unknown function (DUF3362) CH48_2266 PF08497 Radical SAM N-terminal CH48_2267 PF00248 Aldo/keto reductase family CH48_2268 PF00465 Iron-containing alcohol dehydrogenase CH48_2269 PF12833 Helix-turn-helix domain CH48_2269 PF06719 AraC-type transcriptional regulator N-terminus CH48_227 PF04245 37-kD nucleoid-associated bacterial protein CH48_2270 PF09335 SNARE associated Golgi protein CH48_2271 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_2272 PF01618 MotA/TolQ/ExbB proton channel family CH48_2273 PF02472 Biopolymer transport protein ExbD/TolR CH48_228 PF07208 Protein of unknown function (DUF1414) CH48_2280 PF00437 Type II/IV secretion system protein CH48_2283 PF13629 Pilus formation protein N terminal region CH48_2283 PF00263 Bacterial type II and III secretion system protein CH48_2283 PF04972 BON domain CH48_2288 PF13532 2OG-Fe(II) oxygenase superfamily CH48_2289 PF00873 AcrB/AcrD/AcrF family CH48_229 PF11893 Domain of unknown function (DUF3413) CH48_229 PF00884 Sulfatase CH48_2292 PF12833 Helix-turn-helix domain CH48_2297 PF12704 MacB-like periplasmic core domain CH48_2297 PF00005 ABC transporter CH48_2297 PF02687 FtsX-like permease family CH48_2298 PF12833 Helix-turn-helix domain CH48_2301 PF00756 Putative esterase CH48_2301 PF11806 Domain of unknown function (DUF3327) CH48_2302 PF00005 ABC transporter CH48_2303 PF01032 FecCD transport family CH48_2304 PF01032 FecCD transport family CH48_2305 PF01497 Periplasmic binding protein CH48_2306 PF07690 Major Facilitator Superfamily CH48_2307 PF01370 NAD dependent epimerase/dehydratase family CH48_2308 PF02203 Tar ligand binding domain homologue CH48_2308 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_2308 PF00672 HAMP domain CH48_2310 PF00771 FHIPEP family CH48_2311 PF01312 FlhB HrpN YscU SpaS Family CH48_2312 PF01311 Bacterial export proteins, family 1 CH48_2313 PF01313 Bacterial export proteins, family 3 CH48_2314 PF00813 FliP family CH48_2315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_2317 PF02954 Bacterial regulatory protein, Fis family CH48_2317 PF00072 Response regulator receiver domain CH48_2317 PF00158 Sigma-54 interaction domain CH48_2318 PF02049 Flagellar hook-basal body complex protein FliE CH48_2319 PF01514 Secretory protein of YscJ/FliF family CH48_2319 PF08345 Flagellar M-ring protein C-terminal CH48_2322 PF18269 T3SS EscN ATPase C-terminal domain CH48_2322 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_2328 PF00460 Flagella basal body rod protein CH48_2329 PF00460 Flagella basal body rod protein CH48_2329 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_233 PF00872 Transposase, Mutator family CH48_2330 PF03963 Flagellar hook capping protein - N-terminal region CH48_2330 PF13860 FlgD Ig-like domain CH48_2330 PF13861 FlgD Tudor-like domain CH48_2331 PF00460 Flagella basal body rod protein CH48_2331 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_2331 PF07559 Flagellar basal body protein FlaE CH48_2332 PF00460 Flagella basal body rod protein CH48_2332 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_2333 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_2333 PF00460 Flagella basal body rod protein CH48_2334 PF02107 Flagellar L-ring protein CH48_2335 PF02119 Flagellar P-ring protein CH48_2341 PF00486 Transcriptional regulatory protein, C terminal CH48_2341 PF18500 CadC C-terminal domain 1 CH48_2342 PF00669 Bacterial flagellin N-terminal helical region CH48_2342 PF00700 Bacterial flagellin C-terminal helical region CH48_2343 PF07195 Flagellar hook-associated protein 2 C-terminus CH48_2343 PF02465 Flagellar hook-associated protein 2 N-terminus CH48_2343 PF07196 Flagellin hook IN motif CH48_2344 PF02561 Flagellar protein FliS CH48_2348 PF04545 Sigma-70, region 4 CH48_2348 PF04542 Sigma-70 region 2 CH48_2349 PF01618 MotA/TolQ/ExbB proton channel family CH48_235 PF01527 Transposase CH48_2350 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH48_2350 PF00691 OmpA family CH48_2351 PF05433 Glycine zipper 2TM domain CH48_2353 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_2353 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH48_2354 PF13247 4Fe-4S dicluster domain CH48_2355 PF03916 Polysulphide reductase, NrfD CH48_2356 PF00374 Nickel-dependent hydrogenase CH48_2357 PF01750 Hydrogenase maturation protease CH48_2358 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH48_2359 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH48_2360 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_2361 PF01455 HupF/HypC family CH48_2362 PF01924 Hydrogenase formation hypA family CH48_2363 PF02769 AIR synthase related protein, C-terminal domain CH48_2363 PF00586 AIR synthase related protein, N-terminal domain CH48_2364 PF00708 Acylphosphatase CH48_2364 PF17788 HypF Kae1-like domain CH48_2364 PF01300 Telomere recombination CH48_2364 PF07503 HypF finger CH48_2365 PF13784 Fic/DOC family N-terminal CH48_2365 PF02661 Fic/DOC family CH48_2366 PF02110 Hydroxyethylthiazole kinase family CH48_2368 PF00563 EAL domain CH48_2368 PF00990 Diguanylate cyclase, GGDEF domain CH48_2368 PF08447 PAS fold CH48_2368 PF08448 PAS fold CH48_2369 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2370 PF00873 AcrB/AcrD/AcrF family CH48_2372 PF08946 Osmosensory transporter coiled coil CH48_2372 PF00083 Sugar (and other) transporter CH48_2375 PF02690 Na+/Pi-cotransporter CH48_2376 PF01156 Inosine-uridine preferring nucleoside hydrolase CH48_2377 PF00356 Bacterial regulatory proteins, lacI family CH48_2378 PF00083 Sugar (and other) transporter CH48_2378 PF07690 Major Facilitator Superfamily CH48_2379 PF00392 Bacterial regulatory proteins, gntR family CH48_2381 PF00892 EamA-like transporter family CH48_2384 PF01497 Periplasmic binding protein CH48_2385 PF01032 FecCD transport family CH48_2386 PF01032 FecCD transport family CH48_2387 PF00005 ABC transporter CH48_2388 PF00557 Metallopeptidase family M24 CH48_239 PF00194 Eukaryotic-type carbonic anhydrase CH48_2392 PF00529 HlyD membrane-fusion protein of T1SS CH48_2392 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2393 PF04632 Fusaric acid resistance protein family CH48_2395 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_2395 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_2395 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_2396 PF13520 Amino acid permease CH48_240 PF00232 Glycosyl hydrolase family 1 CH48_2400 PF03400 IS1 transposase CH48_2401 PF03811 InsA N-terminal domain CH48_2401 PF12759 InsA C-terminal domain CH48_2406 PF00589 Phage integrase family CH48_2408 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH48_2408 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH48_2408 PF01276 Orn/Lys/Arg decarboxylase, major domain CH48_241 PF02378 Phosphotransferase system, EIIC CH48_241 PF00367 phosphotransferase system, EIIB CH48_241 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_2410 PF01464 Transglycosylase SLT domain CH48_2410 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH48_2411 PF04362 Bacterial Fe(2+) trafficking CH48_2412 PF14815 NUDIX domain CH48_2412 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_2412 PF00633 Helix-hairpin-helix motif CH48_2412 PF10576 Iron-sulfur binding domain of endonuclease III CH48_2413 PF02390 Putative methyltransferase CH48_2414 PF04320 Protein with unknown function (DUF469) CH48_2415 PF04960 Glutaminase CH48_2416 PF11101 Protein of unknown function (DUF2884) CH48_2417 PF04055 Radical SAM superfamily CH48_2417 PF06969 HemN C-terminal domain CH48_2418 PF01725 Ham1 family CH48_2419 PF02594 Uncharacterised ACR, YggU family COG1872 CH48_242 PF01380 SIS domain CH48_242 PF01418 Helix-turn-helix domain, rpiR family CH48_2420 PF02325 YGGT family CH48_2421 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH48_2421 PF03807 NADP oxidoreductase coenzyme F420-dependent CH48_2422 PF01168 Alanine racemase, N-terminal domain CH48_2423 PF00437 Type II/IV secretion system protein CH48_2424 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH48_2425 PF00795 Carbon-nitrogen hydrolase CH48_2426 PF03652 Holliday junction resolvase CH48_2427 PF02622 Uncharacterized ACR, COG1678 CH48_2428 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH48_2428 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH48_2429 PF04452 RNA methyltransferase CH48_2430 PF04231 Endonuclease I CH48_2431 PF10263 SprT-like family CH48_2431 PF17283 SprT-like zinc ribbon domain CH48_2433 PF04143 Sulphur transport CH48_2435 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH48_2435 PF02772 S-adenosylmethionine synthetase, central domain CH48_2435 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH48_2438 PF17810 Arginine decarboxylase helical bundle domain CH48_2438 PF17944 Arginine decarboxylase C-terminal helical extension CH48_2438 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH48_2439 PF00355 Rieske [2Fe-2S] domain CH48_2440 PF01435 Peptidase family M48 CH48_2441 PF02779 Transketolase, pyrimidine binding domain CH48_2441 PF00456 Transketolase, thiamine diphosphate binding domain CH48_2441 PF02780 Transketolase, C-terminal domain CH48_2442 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH48_2442 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_2443 PF00162 Phosphoglycerate kinase CH48_2444 PF01116 Fructose-bisphosphate aldolase class-II CH48_2445 PF09013 YopH, N-terminal CH48_2445 PF00102 Protein-tyrosine phosphatase CH48_2446 PF00924 Mechanosensitive ion channel CH48_2446 PF05552 Conserved TM helix CH48_2447 PF03702 Anhydro-N-acetylmuramic acid kinase CH48_2449 PF01810 LysE type translocator CH48_2450 PF04402 Protein of unknown function (DUF541) CH48_2451 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2451 PF03466 LysR substrate binding domain CH48_2452 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH48_2453 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_2453 PF01842 ACT domain CH48_2453 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_2459 PF00080 Copper/zinc superoxide dismutase (SODC) CH48_2460 PF04055 Radical SAM superfamily CH48_2463 PF01242 6-pyruvoyl tetrahydropterin synthase CH48_2464 PF00175 Oxidoreductase NAD-binding domain CH48_2464 PF00258 Flavodoxin CH48_2464 PF00667 FAD binding domain CH48_2465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH48_2465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH48_2466 PF01507 Phosphoadenosine phosphosulfate reductase family CH48_2469 PF04389 Peptidase family M28 CH48_247 PF06530 Phage antitermination protein Q CH48_2470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_2470 PF14824 Sirohaem biosynthesis protein central CH48_2470 PF10414 Sirohaem synthase dimerisation region CH48_2471 PF01507 Phosphoadenosine phosphosulfate reductase family CH48_2472 PF00009 Elongation factor Tu GTP binding domain CH48_2474 PF12084 Protein of unknown function (DUF3561) CH48_2475 PF04977 Septum formation initiator CH48_2476 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH48_2477 PF02542 YgbB family CH48_2478 PF01142 tRNA pseudouridine synthase D (TruD) CH48_2479 PF01975 Survival protein SurE CH48_2481 PF01551 Peptidase family M23 CH48_2481 PF01476 LysM domain CH48_2482 PF04545 Sigma-70, region 4 CH48_2482 PF04539 Sigma-70 region 3 CH48_2482 PF04542 Sigma-70 region 2 CH48_2482 PF00140 Sigma-70 factor, region 1.2 CH48_2483 PF05190 MutS family domain IV CH48_2483 PF05188 MutS domain II CH48_2483 PF05192 MutS domain III CH48_2483 PF01624 MutS domain I CH48_2483 PF00488 MutS domain V CH48_2487 PF00419 Fimbrial protein CH48_2488 PF00419 Fimbrial protein CH48_2491 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_2491 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_2493 PF00419 Fimbrial protein CH48_2494 PF00419 Fimbrial protein CH48_25 PF13247 4Fe-4S dicluster domain CH48_250 PF06183 DinI-like family CH48_2500 PF03412 Peptidase C39 family CH48_2500 PF00005 ABC transporter CH48_2500 PF00664 ABC transporter transmembrane region CH48_2501 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2502 PF02687 FtsX-like permease family CH48_2502 PF12704 MacB-like periplasmic core domain CH48_2502 PF00005 ABC transporter CH48_2503 PF02321 Outer membrane efflux protein CH48_2504 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_2504 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_2509 PF00155 Aminotransferase class I and II CH48_251 PF01278 Omptin family CH48_2510 PF03150 Di-haem cytochrome c peroxidase CH48_2510 PF00034 Cytochrome c CH48_2510 PF14376 Haem-binding domain CH48_2512 PF00679 Elongation factor G C-terminus CH48_2512 PF14492 Elongation Factor G, domain II CH48_2512 PF03764 Elongation factor G, domain IV CH48_2512 PF00009 Elongation factor Tu GTP binding domain CH48_2512 PF03144 Elongation factor Tu domain 2 CH48_2513 PF01022 Bacterial regulatory protein, arsR family CH48_2514 PF08240 Alcohol dehydrogenase GroES-like domain CH48_2514 PF00107 Zinc-binding dehydrogenase CH48_2515 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_2516 PF03609 PTS system sorbose-specific iic component CH48_2517 PF03830 PTS system sorbose subfamily IIB component CH48_2518 PF03610 PTS system fructose IIA component CH48_2519 PF13936 Helix-turn-helix domain CH48_2519 PF04198 Putative sugar-binding domain CH48_252 PF02743 Cache domain CH48_252 PF00672 HAMP domain CH48_252 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_2520 PF00795 Carbon-nitrogen hydrolase CH48_2524 PF00005 ABC transporter CH48_2525 PF00005 ABC transporter CH48_2526 PF11862 Domain of unknown function (DUF3382) CH48_2526 PF02653 Branched-chain amino acid transport system / permease component CH48_2527 PF02653 Branched-chain amino acid transport system / permease component CH48_2528 PF13458 Periplasmic binding protein CH48_2529 PF05681 Fumarate hydratase (Fumerase) CH48_2529 PF05683 Fumarase C-terminus CH48_253 PF12706 Beta-lactamase superfamily domain CH48_2530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_2530 PF01568 Molydopterin dinucleotide binding domain CH48_2530 PF00384 Molybdopterin oxidoreductase CH48_2531 PF12800 4Fe-4S binding domain CH48_2531 PF13247 4Fe-4S dicluster domain CH48_2532 PF04976 DMSO reductase anchor subunit (DmsC) CH48_2533 PF02613 Nitrate reductase delta subunit CH48_2536 PF07690 Major Facilitator Superfamily CH48_2537 PF02464 Competence-damaged protein CH48_2538 PF00154 recA bacterial DNA recombination protein CH48_2539 PF02631 RecX family CH48_2540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_2540 PF02272 DHHA1 domain CH48_2540 PF01411 tRNA synthetases class II (A) CH48_2541 PF02599 Global regulator protein family CH48_2546 PF13419 Haloacid dehalogenase-like hydrolase CH48_2547 PF09335 SNARE associated Golgi protein CH48_2548 PF04262 Glutamate-cysteine ligase CH48_2549 PF02664 S-Ribosylhomocysteinase (LuxS) CH48_255 PF00144 Beta-lactamase CH48_2551 PF01595 Cyclin M transmembrane N-terminal domain CH48_2551 PF03471 Transporter associated domain CH48_2551 PF00571 CBS domain CH48_2552 PF01578 Cytochrome C assembly protein CH48_2553 PF02881 SRP54-type protein, helical bundle domain CH48_2553 PF00448 SRP54-type protein, GTPase domain CH48_2553 PF02978 Signal peptide binding domain CH48_2554 PF00886 Ribosomal protein S16 CH48_2555 PF05239 PRC-barrel domain CH48_2555 PF01782 RimM N-terminal domain CH48_2556 PF01746 tRNA (Guanine-1)-methyltransferase CH48_2557 PF01245 Ribosomal protein L19 CH48_2558 PF04338 Protein of unknown function, DUF481 CH48_2559 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH48_2560 PF04397 LytTr DNA-binding domain CH48_2560 PF00072 Response regulator receiver domain CH48_2561 PF00793 DAHP synthetase I family CH48_2562 PF01817 Chorismate mutase type II CH48_2562 PF02153 Prephenate dehydrogenase CH48_2563 PF01817 Chorismate mutase type II CH48_2563 PF00800 Prephenate dehydratase CH48_2564 PF01548 Transposase CH48_2564 PF02371 Transposase IS116/IS110/IS902 family CH48_2565 PF02371 Transposase IS116/IS110/IS902 family CH48_2565 PF01548 Transposase CH48_2566 PF07724 AAA domain (Cdc48 subfamily) CH48_2566 PF00004 ATPase family associated with various cellular activities (AAA) CH48_2566 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_2566 PF02861 Clp amino terminal domain, pathogenicity island component CH48_2566 PF17871 AAA lid domain CH48_2568 PF00849 RNA pseudouridylate synthase CH48_2568 PF01479 S4 domain CH48_2569 PF13525 Outer membrane lipoprotein CH48_2570 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH48_2577 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH48_2578 PF13091 PLD-like domain CH48_2579 PF00583 Acetyltransferase (GNAT) family CH48_2579 PF13380 CoA binding domain CH48_2579 PF13607 Succinyl-CoA ligase like flavodoxin domain CH48_258 PF00267 Gram-negative porin CH48_2581 PF00085 Thioredoxin CH48_2582 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH48_2582 PF00588 SpoU rRNA Methylase family CH48_2584 PF07690 Major Facilitator Superfamily CH48_2585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2585 PF00529 HlyD membrane-fusion protein of T1SS CH48_2586 PF02321 Outer membrane efflux protein CH48_2587 PF01047 MarR family CH48_2588 PF05437 Branched-chain amino acid transport protein (AzlD) CH48_2589 PF03591 AzlC protein CH48_2590 PF07690 Major Facilitator Superfamily CH48_2594 PF01425 Amidase CH48_2597 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_2598 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2599 PF00528 Binding-protein-dependent transport system inner membrane component CH48_26 PF00512 His Kinase A (phospho-acceptor) domain CH48_26 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2600 PF00005 ABC transporter CH48_2601 PF00266 Aminotransferase class-V CH48_2602 PF07687 Peptidase dimerisation domain CH48_2602 PF01546 Peptidase family M20/M25/M40 CH48_2603 PF00795 Carbon-nitrogen hydrolase CH48_2604 PF00155 Aminotransferase class I and II CH48_2605 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_2607 PF03079 ARD/ARD' family CH48_2608 PF01008 Initiation factor 2 subunit family CH48_2609 PF01636 Phosphotransferase enzyme family CH48_261 PF07690 Major Facilitator Superfamily CH48_2610 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH48_2610 PF08479 POTRA domain, ShlB-type CH48_2611 PF05860 haemagglutination activity domain CH48_2612 PF18071 HMW1C N-terminal CH48_2612 PF18254 HMW1 domain 2 CH48_2613 PF09317 Domain of unknown function (DUF1974) CH48_2613 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH48_2613 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH48_2614 PF13580 SIS domain CH48_2615 PF03734 L,D-transpeptidase catalytic domain CH48_2616 PF13230 Glutamine amidotransferases class-II CH48_2617 PF11973 NQRA C-terminal domain CH48_2617 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH48_2618 PF03116 NQR2, RnfD, RnfE family CH48_2619 PF04205 FMN-binding domain CH48_262 PF16359 RcsD-ABL domain CH48_262 PF01627 Hpt domain CH48_262 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2620 PF02508 Rnf-Nqr subunit, membrane protein CH48_2621 PF02508 Rnf-Nqr subunit, membrane protein CH48_2622 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_2622 PF00970 Oxidoreductase FAD-binding domain CH48_2622 PF00175 Oxidoreductase NAD-binding domain CH48_2623 PF02424 ApbE family CH48_2624 PF04400 (Na+)-NQR maturation NqrM CH48_2625 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_2626 PF07478 D-ala D-ala ligase C-terminus CH48_2626 PF01820 D-ala D-ala ligase N-terminus CH48_2627 PF08348 YheO-like PAS domain CH48_2627 PF13309 HTH domain CH48_2628 PF00291 Pyridoxal-phosphate dependent enzyme CH48_263 PF00196 Bacterial regulatory proteins, luxR family CH48_263 PF00072 Response regulator receiver domain CH48_2630 PF00817 impB/mucB/samB family CH48_2630 PF11799 impB/mucB/samB family C-terminal domain CH48_2630 PF11798 IMS family HHH motif CH48_2631 PF07687 Peptidase dimerisation domain CH48_2631 PF01546 Peptidase family M20/M25/M40 CH48_2632 PF00156 Phosphoribosyl transferase domain CH48_2634 PF07417 Sigma factor-binding transcriptional regulator Crl CH48_2635 PF00696 Amino acid kinase family CH48_2635 PF01472 PUA domain CH48_2636 PF00171 Aldehyde dehydrogenase family CH48_2637 PF00392 Bacterial regulatory proteins, gntR family CH48_2637 PF07702 UTRA domain CH48_2638 PF00367 phosphotransferase system, EIIB CH48_2638 PF02378 Phosphotransferase system, EIIC CH48_2639 PF02056 Family 4 glycosyl hydrolase CH48_2639 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH48_264 PF00072 Response regulator receiver domain CH48_264 PF09456 RcsC Alpha-Beta-Loop (ABL) CH48_264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_264 PF00512 His Kinase A (phospho-acceptor) domain CH48_2640 PF07317 Flagellar regulator YcgR CH48_2640 PF07238 PilZ domain CH48_2641 PF10091 Putative glucoamylase CH48_2641 PF06165 Glycosyltransferase family 36 CH48_2641 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH48_2644 PF08241 Methyltransferase domain CH48_2648 PF00593 TonB dependent receptor CH48_2648 PF07715 TonB-dependent Receptor Plug Domain CH48_2649 PF01202 Shikimate kinase CH48_2650 PF06865 Pyrimidine/purine nucleoside phosphorylase CH48_2651 PF04381 Putative exonuclease, RdgC CH48_2652 PF00480 ROK family CH48_2653 PF13476 AAA domain CH48_2654 PF12320 Type 5 capsule protein repressor C-terminal domain CH48_2654 PF00149 Calcineurin-like phosphoesterase CH48_2655 PF00072 Response regulator receiver domain CH48_2655 PF00486 Transcriptional regulatory protein, C terminal CH48_2656 PF00989 PAS fold CH48_2656 PF11808 Phosphate regulon sensor protein PhoR CH48_2656 PF00512 His Kinase A (phospho-acceptor) domain CH48_2656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2657 PF12849 PBP superfamily domain CH48_2658 PF05525 Branched-chain amino acid transport protein CH48_2659 PF00324 Amino acid permease CH48_266 PF00521 DNA gyrase/topoisomerase IV, subunit A CH48_266 PF03989 DNA gyrase C-terminal domain, beta-propeller CH48_2660 PF00128 Alpha amylase, catalytic domain CH48_2660 PF02903 Alpha amylase, N-terminal ig-like domain CH48_2663 PF01848 Hok/gef family CH48_2664 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH48_2664 PF00578 AhpC/TSA family CH48_2665 PF04336 Acyl carrier protein phosphodiesterase CH48_2666 PF02547 Queuosine biosynthesis protein CH48_2669 PF01702 Queuine tRNA-ribosyltransferase CH48_2670 PF02699 Preprotein translocase subunit CH48_2671 PF02355 Protein export membrane protein CH48_2671 PF13721 SecD export protein N-terminal TM region CH48_2671 PF07549 SecD/SecF GG Motif CH48_2672 PF02355 Protein export membrane protein CH48_2672 PF07549 SecD/SecF GG Motif CH48_2676 PF03477 ATP cone domain CH48_2677 PF01872 RibD C-terminal domain CH48_2677 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_2678 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH48_2679 PF01029 NusB family CH48_268 PF03477 ATP cone domain CH48_268 PF00317 Ribonucleotide reductase, all-alpha domain CH48_268 PF02867 Ribonucleotide reductase, barrel domain CH48_2680 PF02769 AIR synthase related protein, C-terminal domain CH48_2680 PF00586 AIR synthase related protein, N-terminal domain CH48_2681 PF04608 Phosphatidylglycerophosphatase A CH48_2683 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH48_2683 PF02780 Transketolase, C-terminal domain CH48_2683 PF02779 Transketolase, pyrimidine binding domain CH48_2684 PF00348 Polyprenyl synthetase CH48_2685 PF02609 Exonuclease VII small subunit CH48_2686 PF02568 Thiamine biosynthesis protein (ThiI) CH48_2686 PF02926 THUMP domain CH48_2687 PF01965 DJ-1/PfpI family CH48_2688 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH48_2688 PF02558 Ketopantoate reductase PanE/ApbA CH48_2689 PF04461 Protein of unknown function (DUF520) CH48_269 PF00268 Ribonucleotide reductase, small chain CH48_2690 PF07690 Major Facilitator Superfamily CH48_2691 PF01040 UbiA prenyltransferase family CH48_2692 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH48_2693 PF00510 Cytochrome c oxidase subunit III CH48_2694 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH48_2695 PF06481 COX Aromatic Rich Motif CH48_2695 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH48_2696 PF03502 Nucleoside-specific channel-forming protein, Tsx CH48_2697 PF07690 Major Facilitator Superfamily CH48_2698 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_2698 PF03923 Uncharacterized lipoprotein CH48_2699 PF01722 BolA-like protein CH48_27 PF00072 Response regulator receiver domain CH48_27 PF00196 Bacterial regulatory proteins, luxR family CH48_270 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_2700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_2700 PF05698 Bacterial trigger factor protein (TF) C-terminus CH48_2700 PF05697 Bacterial trigger factor protein (TF) CH48_2701 PF00574 Clp protease CH48_2702 PF06689 ClpX C4-type zinc finger CH48_2702 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_2702 PF07724 AAA domain (Cdc48 subfamily) CH48_2703 PF00004 ATPase family associated with various cellular activities (AAA) CH48_2703 PF05362 Lon protease (S16) C-terminal proteolytic domain CH48_2703 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH48_2704 PF00216 Bacterial DNA-binding protein CH48_2706 PF13145 PPIC-type PPIASE domain CH48_2709 PF06508 Queuosine biosynthesis protein QueC CH48_271 PF03974 Ecotin CH48_2710 PF12793 Sugar transport-related sRNA regulator N-term CH48_2710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_2713 PF01037 Lrp/AsnC ligand binding domain CH48_2713 PF13404 AsnC-type helix-turn-helix domain CH48_2714 PF00664 ABC transporter transmembrane region CH48_2714 PF00005 ABC transporter CH48_2715 PF00005 ABC transporter CH48_2715 PF00664 ABC transporter transmembrane region CH48_2716 PF00543 Nitrogen regulatory protein P-II CH48_2717 PF00909 Ammonium Transporter Family CH48_2719 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH48_272 PF00082 Subtilase family CH48_2720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_2721 PF05321 Haemolysin expression modulating protein CH48_2722 PF10757 Biofilm formation regulator YbaJ CH48_2725 PF00005 ABC transporter CH48_2726 PF00950 ABC 3 transport family CH48_2727 PF01297 Zinc-uptake complex component A periplasmic CH48_2728 PF00444 Ribosomal protein L36 CH48_2729 PF01197 Ribosomal protein L31 CH48_2731 PF10941 Protein of unknown function DUF2620 CH48_2732 PF01676 Metalloenzyme superfamily CH48_2733 PF01168 Alanine racemase, N-terminal domain CH48_2735 PF00873 AcrB/AcrD/AcrF family CH48_2736 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2736 PF00529 HlyD membrane-fusion protein of T1SS CH48_2737 PF08361 MAATS-type transcriptional repressor, C-terminal region CH48_2737 PF00440 Bacterial regulatory proteins, tetR family CH48_2738 PF02635 DsrE/DsrF-like family CH48_2740 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH48_2740 PF12795 Mechanosensitive ion channel porin domain CH48_2740 PF00924 Mechanosensitive ion channel CH48_2742 PF04304 Protein of unknown function (DUF454) CH48_2743 PF00156 Phosphoribosyl transferase domain CH48_2744 PF12169 DNA polymerase III subunits gamma and tau domain III CH48_2744 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH48_2744 PF12170 DNA polymerase III tau subunit V interacting with alpha CH48_2745 PF02575 YbaB/EbfC DNA-binding family CH48_2746 PF02132 RecR protein CH48_2746 PF13662 Toprim domain CH48_2747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2747 PF00183 Hsp90 protein CH48_2748 PF05191 Adenylate kinase, active site lid CH48_2749 PF00762 Ferrochelatase CH48_275 PF00994 Probable molybdopterin binding domain CH48_2750 PF01943 Polysaccharide biosynthesis protein CH48_2751 PF00535 Glycosyl transferase family 2 CH48_2751 PF01501 Glycosyl transferase family 8 CH48_2752 PF00535 Glycosyl transferase family 2 CH48_2753 PF00534 Glycosyl transferases group 1 CH48_2753 PF13439 Glycosyltransferase Family 4 CH48_2755 PF00953 Glycosyl transferase family 4 CH48_2756 PF02719 Polysaccharide biosynthesis protein CH48_2757 PF00534 Glycosyl transferases group 1 CH48_2757 PF13439 Glycosyltransferase Family 4 CH48_2758 PF16363 GDP-mannose 4,6 dehydratase CH48_2759 PF00294 pfkB family carbohydrate kinase CH48_276 PF03222 Tryptophan/tyrosine permease family CH48_2760 PF02254 TrkA-N domain CH48_2760 PF00999 Sodium/hydrogen exchanger family CH48_2761 PF07690 Major Facilitator Superfamily CH48_2762 PF02872 5'-nucleotidase, C-terminal domain CH48_2762 PF00149 Calcineurin-like phosphoesterase CH48_2764 PF04073 Aminoacyl-tRNA editing domain CH48_2765 PF01963 TraB family CH48_2766 PF00403 Heavy-metal-associated domain CH48_2767 PF13411 MerR HTH family regulatory protein CH48_2768 PF01957 NfeD-like C-terminal, partner-binding CH48_2769 PF01145 SPFH domain / Band 7 family CH48_2769 PF16200 C-terminal region of band_7 CH48_277 PF07437 YfaZ precursor CH48_2770 PF00085 Thioredoxin CH48_2771 PF00106 short chain dehydrogenase CH48_2772 PF13472 GDSL-like Lipase/Acylhydrolase family CH48_2773 PF00005 ABC transporter CH48_2775 PF02222 ATP-grasp domain CH48_2775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH48_2776 PF00731 AIR carboxylase CH48_2777 PF00149 Calcineurin-like phosphoesterase CH48_2778 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH48_2779 PF01406 tRNA synthetases class I (C) catalytic domain CH48_2779 PF09190 DALR domain CH48_278 PF00199 Catalase CH48_278 PF06628 Catalase-related immune-responsive CH48_2781 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH48_2781 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH48_2783 PF00589 Phage integrase family CH48_2784 PF01695 IstB-like ATP binding protein CH48_2788 PF00486 Transcriptional regulatory protein, C terminal CH48_2788 PF00072 Response regulator receiver domain CH48_279 PF00501 AMP-binding enzyme CH48_279 PF13193 AMP-binding enzyme C-terminal domain CH48_2791 PF08007 Cupin superfamily protein CH48_2792 PF00221 Aromatic amino acid lyase CH48_2793 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH48_2795 PF00664 ABC transporter transmembrane region CH48_2795 PF00005 ABC transporter CH48_2798 PF00149 Calcineurin-like phosphoesterase CH48_28 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_280 PF13378 Enolase C-terminal domain-like CH48_2800 PF00196 Bacterial regulatory proteins, luxR family CH48_2801 PF00313 'Cold-shock' DNA-binding domain CH48_2802 PF00313 'Cold-shock' DNA-binding domain CH48_2803 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_2804 PF05230 MASE2 domain CH48_2804 PF00990 Diguanylate cyclase, GGDEF domain CH48_2805 PF02416 mttA/Hcf106 family CH48_2806 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH48_2806 PF04055 Radical SAM superfamily CH48_2807 PF03099 Biotin/lipoate A/B protein ligase family CH48_2808 PF04359 Protein of unknown function (DUF493) CH48_2809 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_2809 PF07943 Penicillin-binding protein 5, C-terminal domain CH48_281 PF00378 Enoyl-CoA hydratase/isomerase CH48_2810 PF05036 Sporulation related domain CH48_2810 PF03330 Lytic transglycolase CH48_2811 PF01098 Cell cycle protein CH48_2812 PF03717 Penicillin-binding Protein dimerisation domain CH48_2812 PF00905 Penicillin binding protein transpeptidase domain CH48_2813 PF02590 Predicted SPOUT methyltransferase CH48_2815 PF01467 Cytidylyltransferase-like CH48_2816 PF06144 DNA polymerase III, delta subunit CH48_2816 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH48_2817 PF04390 Lipopolysaccharide-assembly CH48_2818 PF00133 tRNA synthetases class I (I, L, M and V) CH48_2818 PF13603 Leucyl-tRNA synthetase, Domain 2 CH48_2818 PF08264 Anticodon-binding domain of tRNA CH48_2819 PF07295 Zinc-ribbon containing domain CH48_282 PF12697 Alpha/beta hydrolase family CH48_2820 PF00005 ABC transporter CH48_2821 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2822 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2823 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_2825 PF00795 Carbon-nitrogen hydrolase CH48_2826 PF03471 Transporter associated domain CH48_2826 PF00571 CBS domain CH48_2827 PF02130 Uncharacterized protein family UPF0054 CH48_2828 PF02562 PhoH-like protein CH48_2829 PF04055 Radical SAM superfamily CH48_2829 PF01938 TRAM domain CH48_2829 PF00919 Uncharacterized protein family UPF0004 CH48_283 PF16582 Middle domain of thiamine pyrophosphate CH48_283 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_283 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_2830 PF01494 FAD binding domain CH48_2837 PF00733 Asparagine synthase CH48_2837 PF13537 Glutamine amidotransferase domain CH48_2838 PF13344 Haloacid dehalogenase-like hydrolase CH48_2839 PF01047 MarR family CH48_2839 PF00480 ROK family CH48_284 PF00425 chorismate binding enzyme CH48_2840 PF01979 Amidohydrolase family CH48_2841 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH48_2842 PF02378 Phosphotransferase system, EIIC CH48_2842 PF00367 phosphotransferase system, EIIB CH48_2842 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_2843 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH48_2843 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_2844 PF03573 outer membrane porin, OprD family CH48_2845 PF13982 YbfN-like lipoprotein CH48_2846 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH48_2846 PF02838 Glycosyl hydrolase family 20, domain 2 CH48_2846 PF03173 Putative carbohydrate binding domain CH48_2846 PF00728 Glycosyl hydrolase family 20, catalytic domain CH48_2847 PF01475 Ferric uptake regulator family CH48_2848 PF00258 Flavodoxin CH48_2849 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_2849 PF00672 HAMP domain CH48_2849 PF02203 Tar ligand binding domain homologue CH48_285 PF00872 Transposase, Mutator family CH48_2850 PF01402 Ribbon-helix-helix protein, copG family CH48_2852 PF12697 Alpha/beta hydrolase family CH48_2853 PF17206 SeqA protein N-terminal domain CH48_2853 PF03925 SeqA protein C-terminal domain CH48_2854 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_2854 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_2854 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_2854 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_2856 PF00892 EamA-like transporter family CH48_2857 PF00486 Transcriptional regulatory protein, C terminal CH48_2857 PF00072 Response regulator receiver domain CH48_2858 PF02702 Osmosensitive K+ channel His kinase sensor domain CH48_2858 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_2858 PF13493 Domain of unknown function (DUF4118) CH48_2858 PF13492 GAF domain CH48_2858 PF00512 His Kinase A (phospho-acceptor) domain CH48_2859 PF02669 K+-transporting ATPase, c chain CH48_286 PF05957 Bacterial protein of unknown function (DUF883) CH48_2861 PF03814 Potassium-transporting ATPase A subunit CH48_2862 PF10725 Protein of unknown function (DUF2517) CH48_2864 PF02794 RTX toxin acyltransferase family CH48_2865 PF12146 Serine aminopeptidase, S33 CH48_2865 PF11713 Peptidase C80 family CH48_2865 PF16671 Actin cross-linking domain CH48_2865 PF11647 Membrane Localization Domain CH48_2865 PF11713 Peptidase C80 family CH48_2865 PF12146 Serine aminopeptidase, S33 CH48_2865 PF07634 RtxA repeat CH48_2865 PF16671 Actin cross-linking domain CH48_2865 PF07634 RtxA repeat CH48_2865 PF11647 Membrane Localization Domain CH48_2866 PF08349 Protein of unknown function (DUF1722) CH48_2867 PF00875 DNA photolyase CH48_2867 PF03441 FAD binding domain of DNA photolyase CH48_2868 PF02112 cAMP phosphodiesterases class-II CH48_2869 PF01784 NIF3 (NGG1p interacting factor 3) CH48_2871 PF02682 Carboxyltransferase domain, subdomain C and D CH48_2872 PF02626 Carboxyltransferase domain, subdomain A and B CH48_2873 PF03746 LamB/YcsF family CH48_2876 PF01470 Pyroglutamyl peptidase CH48_2877 PF00285 Citrate synthase, C-terminal domain CH48_2878 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH48_2879 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH48_2880 PF00890 FAD binding domain CH48_2880 PF02910 Fumarate reductase flavoprotein C-term CH48_2881 PF13085 2Fe-2S iron-sulfur cluster binding domain CH48_2882 PF02779 Transketolase, pyrimidine binding domain CH48_2882 PF16078 2-oxoglutarate dehydrogenase N-terminus CH48_2882 PF00676 Dehydrogenase E1 component CH48_2882 PF16870 2-oxoglutarate dehydrogenase C-terminal CH48_2883 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH48_2883 PF00364 Biotin-requiring enzyme CH48_2883 PF02817 e3 binding domain CH48_2884 PF00549 CoA-ligase CH48_2884 PF08442 ATP-grasp domain CH48_2885 PF00549 CoA-ligase CH48_2885 PF02629 CoA binding domain CH48_2887 PF00149 Calcineurin-like phosphoesterase CH48_2887 PF02872 5'-nucleotidase, C-terminal domain CH48_2888 PF01654 Cytochrome bd terminal oxidase subunit I CH48_2889 PF02322 Cytochrome bd terminal oxidase subunit II CH48_289 PF03928 Haem-degrading CH48_2890 PF08173 Membrane bound YbgT-like protein CH48_2891 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH48_2892 PF03061 Thioesterase superfamily CH48_2893 PF01618 MotA/TolQ/ExbB proton channel family CH48_2894 PF02472 Biopolymer transport protein ExbD/TolR CH48_2895 PF06519 TolA C-terminal CH48_2895 PF06519 TolA C-terminal CH48_2896 PF04052 TolB amino-terminal domain CH48_2896 PF07676 WD40-like Beta Propeller Repeat CH48_2897 PF00691 OmpA family CH48_2898 PF16331 TolA binding protein trimerisation CH48_2898 PF13174 Tetratricopeptide repeat CH48_290 PF07690 Major Facilitator Superfamily CH48_2903 PF02445 Quinolinate synthetase A protein CH48_2904 PF04973 Nicotinamide mononucleotide transporter CH48_2905 PF01545 Cation efflux family CH48_2906 PF00793 DAHP synthetase I family CH48_2907 PF00300 Histidine phosphatase superfamily (branch 1) CH48_2908 PF01223 DNA/RNA non-specific endonuclease CH48_291 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_291 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_2910 PF00082 Subtilase family CH48_2912 PF01263 Aldose 1-epimerase CH48_2913 PF10509 Galactokinase galactose-binding signature CH48_2913 PF08544 GHMP kinases C terminal CH48_2913 PF00288 GHMP kinases N terminal domain CH48_2914 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH48_2914 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH48_2915 PF16363 GDP-mannose 4,6 dehydratase CH48_2917 PF00005 ABC transporter CH48_2918 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_2918 PF03459 TOBE domain CH48_2919 PF10766 Multidrug efflux pump-associated protein AcrZ CH48_2922 PF13356 Arm DNA-binding domain CH48_2922 PF00589 Phage integrase family CH48_294 PF00106 short chain dehydrogenase CH48_295 PF01202 Shikimate kinase CH48_2958 PF00959 Phage lysozyme CH48_2960 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2961 PF00005 ABC transporter CH48_2961 PF03459 TOBE domain CH48_2963 PF10282 Lactonase, 7-bladed beta-propeller CH48_2964 PF00202 Aminotransferase class-III CH48_2965 PF04055 Radical SAM superfamily CH48_2965 PF06968 Biotin and Thiamin Synthesis associated domain CH48_2966 PF00155 Aminotransferase class I and II CH48_2967 PF08241 Methyltransferase domain CH48_2969 PF00005 ABC transporter CH48_297 PF06496 Protein of unknown function (DUF1097) CH48_2970 PF04851 Type III restriction enzyme, res subunit CH48_2970 PF00271 Helicase conserved C-terminal domain CH48_2970 PF02151 UvrB/uvrC motif CH48_2970 PF17757 UvrB interaction domain CH48_2970 PF12344 Ultra-violet resistance protein B CH48_2971 PF09905 DNA-binding protein VF530 CH48_2972 PF01933 Uncharacterised protein family UPF0052 CH48_2973 PF06463 Molybdenum Cofactor Synthesis C CH48_2973 PF04055 Radical SAM superfamily CH48_2974 PF01967 MoaC family CH48_2975 PF02597 ThiS family CH48_2976 PF02391 MoaE protein CH48_2977 PF01027 Inhibitor of apoptosis-promoting Bax1 CH48_2980 PF00005 ABC transporter CH48_2981 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_2982 PF09209 Tetracyclin repressor-like, C-terminal domain CH48_2982 PF00440 Bacterial regulatory proteins, tetR family CH48_2983 PF00271 Helicase conserved C-terminal domain CH48_2983 PF00270 DEAD/DEAH box helicase CH48_2984 PF01207 Dihydrouridine synthase (Dus) CH48_2986 PF00571 CBS domain CH48_2986 PF01769 Divalent cation transporter CH48_2986 PF03448 MgtE intracellular N domain CH48_2988 PF00768 D-alanyl-D-alanine carboxypeptidase CH48_2989 PF01565 FAD binding domain CH48_2989 PF09330 D-lactate dehydrogenase, membrane binding CH48_299 PF00361 Proton-conducting membrane transporter CH48_2990 PF01928 CYTH domain CH48_2991 PF01844 HNH endonuclease CH48_2993 PF04226 Transglycosylase associated protein CH48_2994 PF00005 ABC transporter CH48_2996 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2997 PF00528 Binding-protein-dependent transport system inner membrane component CH48_2998 PF07308 Protein of unknown function (DUF1456) CH48_3 PF00550 Phosphopantetheine attachment site CH48_300 PF00361 Proton-conducting membrane transporter CH48_3000 PF02653 Branched-chain amino acid transport system / permease component CH48_3001 PF02653 Branched-chain amino acid transport system / permease component CH48_3002 PF00005 ABC transporter CH48_3003 PF00005 ABC transporter CH48_3004 PF00581 Rhodanese-like domain CH48_3005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_3005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_3007 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_3008 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3009 PF00005 ABC transporter CH48_301 PF00361 Proton-conducting membrane transporter CH48_301 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_3010 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3014 PF03466 LysR substrate binding domain CH48_3014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3015 PF00892 EamA-like transporter family CH48_3017 PF00267 Gram-negative porin CH48_3018 PF06733 DEAD_2 CH48_3018 PF13307 Helicase C-terminal domain CH48_3019 PF00230 Major intrinsic protein CH48_302 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH48_3020 PF02885 Glycosyl transferase family, helical bundle domain CH48_3024 PF05971 RNA methyltransferase CH48_3025 PF13426 PAS domain CH48_3025 PF08447 PAS fold CH48_3025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_3026 PF00005 ABC transporter CH48_3027 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3028 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_3029 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH48_303 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH48_3030 PF00210 Ferritin-like domain CH48_3031 PF13847 Methyltransferase domain CH48_3034 PF02469 Fasciclin domain CH48_3036 PF00892 EamA-like transporter family CH48_3037 PF13505 Outer membrane protein beta-barrel domain CH48_304 PF12838 4Fe-4S dicluster domain CH48_3041 PF12848 ABC transporter CH48_3041 PF00005 ABC transporter CH48_3043 PF00899 ThiF family CH48_3044 PF03453 MoeA N-terminal region (domain I and II) CH48_3044 PF00994 Probable molybdopterin binding domain CH48_3044 PF03454 MoeA C-terminal region (domain IV) CH48_3047 PF12704 MacB-like periplasmic core domain CH48_3047 PF00005 ABC transporter CH48_3047 PF02687 FtsX-like permease family CH48_305 PF00146 NADH dehydrogenase CH48_3051 PF00756 Putative esterase CH48_3052 PF00107 Zinc-binding dehydrogenase CH48_3052 PF08240 Alcohol dehydrogenase GroES-like domain CH48_3053 PF03466 LysR substrate binding domain CH48_3053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3054 PF06779 Uncharacterised MFS-type transporter YbfB CH48_3055 PF01227 GTP cyclohydrolase I CH48_3056 PF04235 Protein of unknown function (DUF418) CH48_3057 PF00356 Bacterial regulatory proteins, lacI family CH48_3058 PF13407 Periplasmic binding protein domain CH48_3059 PF00005 ABC transporter CH48_306 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_306 PF00384 Molybdopterin oxidoreductase CH48_306 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH48_306 PF01568 Molydopterin dinucleotide binding domain CH48_3060 PF02653 Branched-chain amino acid transport system / permease component CH48_3061 PF01590 GAF domain CH48_3061 PF00158 Sigma-54 interaction domain CH48_3062 PF01568 Molydopterin dinucleotide binding domain CH48_3062 PF00384 Molybdopterin oxidoreductase CH48_3062 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_3063 PF12800 4Fe-4S binding domain CH48_3063 PF13247 4Fe-4S dicluster domain CH48_3064 PF01750 Hydrogenase maturation protease CH48_3065 PF07450 Formate hydrogenlyase maturation protein HycH CH48_3066 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_3067 PF12838 4Fe-4S dicluster domain CH48_3068 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH48_3068 PF00374 Nickel-dependent hydrogenase CH48_3068 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH48_3069 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_3069 PF00361 Proton-conducting membrane transporter CH48_307 PF10531 SLBB domain CH48_307 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_307 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH48_3070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH48_3071 PF00361 Proton-conducting membrane transporter CH48_3071 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH48_3072 PF00146 NADH dehydrogenase CH48_3073 PF00361 Proton-conducting membrane transporter CH48_3074 PF00037 4Fe-4S binding domain CH48_3074 PF12798 4Fe-4S binding domain CH48_3075 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH48_3076 PF01455 HupF/HypC family CH48_3077 PF02698 DUF218 domain CH48_3078 PF03949 Malic enzyme, NAD binding domain CH48_3078 PF00390 Malic enzyme, N-terminal domain CH48_3080 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_3080 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH48_3081 PF04172 LrgB-like family CH48_3082 PF03788 LrgA family CH48_3083 PF07690 Major Facilitator Superfamily CH48_3087 PF09334 tRNA synthetases class I (M) CH48_3087 PF01588 Putative tRNA binding domain CH48_3088 PF10609 NUBPL iron-transfer P-loop NTPase CH48_3089 PF00485 Phosphoribulokinase / Uridine kinase family CH48_309 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH48_309 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH48_3090 PF00692 dUTPase CH48_3091 PF05170 AsmA family CH48_3092 PF03606 C4-dicarboxylate anaerobic carrier CH48_3093 PF03471 Transporter associated domain CH48_3093 PF00571 CBS domain CH48_3093 PF03741 Integral membrane protein TerC family CH48_3094 PF00483 Nucleotidyl transferase CH48_3094 PF01050 Mannose-6-phosphate isomerase CH48_3095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH48_3095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH48_3095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH48_3095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH48_3096 PF00483 Nucleotidyl transferase CH48_3097 PF00483 Nucleotidyl transferase CH48_3098 PF16363 GDP-mannose 4,6 dehydratase CH48_3099 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_31 PF07681 DoxX CH48_310 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH48_3101 PF00005 ABC transporter CH48_3104 PF02911 Formyl transferase, C-terminal domain CH48_3104 PF00551 Formyl transferase CH48_3105 PF13439 Glycosyltransferase Family 4 CH48_3105 PF00534 Glycosyl transferases group 1 CH48_3106 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH48_3106 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH48_3107 PF01502 Phosphoribosyl-AMP cyclohydrolase CH48_3107 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH48_3108 PF00977 Histidine biosynthesis protein CH48_3109 PF00977 Histidine biosynthesis protein CH48_311 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH48_3110 PF00117 Glutamine amidotransferase class-I CH48_3111 PF00475 Imidazoleglycerol-phosphate dehydratase CH48_3112 PF00155 Aminotransferase class I and II CH48_3113 PF00815 Histidinol dehydrogenase CH48_3114 PF01634 ATP phosphoribosyltransferase CH48_3114 PF08029 HisG, C-terminal domain CH48_3115 PF01370 NAD dependent epimerase/dehydratase family CH48_3117 PF02653 Branched-chain amino acid transport system / permease component CH48_3118 PF00005 ABC transporter CH48_312 PF03466 LysR substrate binding domain CH48_312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3122 PF13520 Amino acid permease CH48_3123 PF00929 Exonuclease CH48_3123 PF08411 Exonuclease C-terminal CH48_3124 PF00501 AMP-binding enzyme CH48_3124 PF00550 Phosphopantetheine attachment site CH48_3124 PF07993 Male sterility protein CH48_3125 PF04632 Fusaric acid resistance protein family CH48_3126 PF04363 Protein of unknown function (DUF496) CH48_3127 PF02653 Branched-chain amino acid transport system / permease component CH48_3128 PF02653 Branched-chain amino acid transport system / permease component CH48_313 PF00155 Aminotransferase class I and II CH48_3130 PF13407 Periplasmic binding protein domain CH48_3131 PF00288 GHMP kinases N terminal domain CH48_3132 PF00155 Aminotransferase class I and II CH48_3133 PF14824 Sirohaem biosynthesis protein central CH48_3133 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_3133 PF10414 Sirohaem synthase dimerisation region CH48_3134 PF00871 Acetokinase family CH48_3135 PF10662 Ethanolamine utilisation - propanediol utilisation CH48_3136 PF00936 BMC domain CH48_3138 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_3138 PF10531 SLBB domain CH48_3138 PF13237 4Fe-4S dicluster domain CH48_3138 PF13375 RnfC Barrel sandwich hybrid domain CH48_3139 PF00465 Iron-containing alcohol dehydrogenase CH48_3140 PF00171 Aldehyde dehydrogenase family CH48_3141 PF01923 Cobalamin adenosyltransferase CH48_3142 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH48_3144 PF06130 Phosphate propanoyltransferase CH48_3146 PF00936 BMC domain CH48_3148 PF08841 Diol dehydratase reactivase ATPase-like domain CH48_3148 PF18427 DD-reactivating factor swiveling domain CH48_315 PF02080 TrkA-C domain CH48_315 PF03600 Citrate transporter CH48_3150 PF02287 Dehydratase small subunit CH48_3151 PF02288 Dehydratase medium subunit CH48_3152 PF02286 Dehydratase large subunit CH48_3153 PF00936 BMC domain CH48_3154 PF00936 BMC domain CH48_3155 PF00230 Major intrinsic protein CH48_3156 PF10114 Sensory domain found in PocR CH48_3156 PF12833 Helix-turn-helix domain CH48_3157 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH48_3157 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH48_3158 PF03186 CobD/Cbib protein CH48_3159 PF02570 Precorrin-8X methylmutase CH48_3160 PF01888 CbiD CH48_3161 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_3162 PF05175 Methyltransferase small domain CH48_3163 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_3164 PF01890 Cobalamin synthesis G C-terminus CH48_3164 PF11760 Cobalamin synthesis G N-terminal CH48_3164 PF11761 Cobalamin biosynthesis central region CH48_3165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_3166 PF02571 Precorrin-6x reductase CbiJ/CobK CH48_3167 PF06180 Cobalt chelatase (CbiK) CH48_3168 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH48_3169 PF01891 Cobalt uptake substrate-specific transmembrane region CH48_317 PF13419 Haloacid dehalogenase-like hydrolase CH48_3170 PF02553 Cobalt transport protein component CbiN CH48_3171 PF02361 Cobalt transport protein CH48_3172 PF00005 ABC transporter CH48_3173 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH48_3174 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH48_3175 PF02654 Cobalamin-5-phosphate synthase CH48_3176 PF00300 Histidine phosphatase superfamily (branch 1) CH48_3177 PF02277 Phosphoribosyltransferase CH48_3178 PF03825 Nucleoside H+ symporter CH48_318 PF03887 YfbU domain CH48_3188 PF17871 AAA lid domain CH48_3188 PF00004 ATPase family associated with various cellular activities (AAA) CH48_3188 PF07724 AAA domain (Cdc48 subfamily) CH48_3188 PF10431 C-terminal, D2-small domain, of ClpB protein CH48_3189 PF00419 Fimbrial protein CH48_319 PF04217 Protein of unknown function, DUF412 CH48_3190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_3190 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_3191 PF13953 PapC C-terminal domain CH48_3191 PF13954 PapC N-terminal domain CH48_3191 PF00577 Outer membrane usher protein CH48_320 PF00871 Acetokinase family CH48_3200 PF04717 Type VI secretion system, phage-baseplate injector CH48_3205 PF00764 Arginosuccinate synthase CH48_3206 PF01554 MatE CH48_3208 PF02581 Thiamine monophosphate synthase CH48_321 PF01515 Phosphate acetyl/butaryl transferase CH48_321 PF07085 DRTGG domain CH48_3210 PF00455 DeoR C terminal sensor domain CH48_3210 PF08220 DeoR-like helix-turn-helix domain CH48_3211 PF00144 Beta-lactamase CH48_3212 PF00072 Response regulator receiver domain CH48_3212 PF01584 CheW-like domain CH48_3214 PF00106 short chain dehydrogenase CH48_3216 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH48_3216 PF02558 Ketopantoate reductase PanE/ApbA CH48_3218 PF08402 TOBE domain CH48_3218 PF00005 ABC transporter CH48_3219 PF00528 Binding-protein-dependent transport system inner membrane component CH48_322 PF00356 Bacterial regulatory proteins, lacI family CH48_322 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_3221 PF07690 Major Facilitator Superfamily CH48_3222 PF05231 MASE1 CH48_3222 PF07730 Histidine kinase CH48_3222 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3223 PF00072 Response regulator receiver domain CH48_3223 PF00196 Bacterial regulatory proteins, luxR family CH48_3224 PF12431 Transcriptional regulator CH48_3224 PF00072 Response regulator receiver domain CH48_3226 PF00989 PAS fold CH48_3226 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3226 PF17203 Single cache domain 3 CH48_3226 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH48_3229 PF06857 Malonate decarboxylase delta subunit (MdcD) CH48_323 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_3230 PF03328 HpcH/HpaI aldolase/citrate lyase family CH48_3231 PF04223 Citrate lyase, alpha subunit (CitF) CH48_3232 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH48_3232 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH48_3233 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH48_3234 PF00939 Sodium:sulfate symporter transmembrane region CH48_3235 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH48_3237 PF03480 Bacterial extracellular solute-binding protein, family 7 CH48_3238 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH48_3238 PF01648 4'-phosphopantetheinyl transferase superfamily CH48_3240 PF00083 Sugar (and other) transporter CH48_3241 PF00381 PTS HPr component phosphorylation site CH48_3241 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH48_3242 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH48_3243 PF00849 RNA pseudouridylate synthase CH48_3246 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_3246 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_3248 PF13954 PapC N-terminal domain CH48_3248 PF00577 Outer membrane usher protein CH48_3248 PF13953 PapC C-terminal domain CH48_3249 PF02753 Pili assembly chaperone PapD, C-terminal domain CH48_3249 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_325 PF03611 PTS system sugar-specific permease component CH48_3251 PF00989 PAS fold CH48_3251 PF00072 Response regulator receiver domain CH48_3251 PF00512 His Kinase A (phospho-acceptor) domain CH48_3251 PF01627 Hpt domain CH48_3251 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_3251 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3252 PF00196 Bacterial regulatory proteins, luxR family CH48_3252 PF00072 Response regulator receiver domain CH48_3254 PF06167 Glucose-regulated metallo-peptidase M90 CH48_3255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH48_3255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_3260 PF13953 PapC C-terminal domain CH48_3260 PF00577 Outer membrane usher protein CH48_3260 PF13954 PapC N-terminal domain CH48_3261 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH48_3266 PF00328 Histidine phosphatase superfamily (branch 2) CH48_3267 PF14001 YdfZ protein CH48_3270 PF10777 Inner membrane protein YlaC CH48_3271 PF16197 Ketoacyl-synthetase C-terminal extension CH48_3271 PF08240 Alcohol dehydrogenase GroES-like domain CH48_3271 PF00698 Acyl transferase domain CH48_3271 PF00107 Zinc-binding dehydrogenase CH48_3271 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_3271 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_3271 PF00550 Phosphopantetheine attachment site CH48_3271 PF14765 Polyketide synthase dehydratase CH48_3271 PF08659 KR domain CH48_3273 PF00872 Transposase, Mutator family CH48_3274 PF02929 Beta galactosidase small chain CH48_3274 PF00703 Glycosyl hydrolases family 2 CH48_3274 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH48_3274 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH48_3274 PF16353 Domain of unknown function(DUF4981) CH48_3275 PF00356 Bacterial regulatory proteins, lacI family CH48_3276 PF00313 'Cold-shock' DNA-binding domain CH48_3278 PF10781 Dextransucrase DSRB CH48_3279 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_3279 PF00672 HAMP domain CH48_3279 PF02203 Tar ligand binding domain homologue CH48_328 PF00293 NUDIX domain CH48_3282 PF02308 MgtC family CH48_3283 PF00689 Cation transporting ATPase, C-terminus CH48_3283 PF00690 Cation transporter/ATPase, N-terminus CH48_3284 PF16884 N-terminal domain of oxidoreductase CH48_3284 PF00107 Zinc-binding dehydrogenase CH48_3285 PF00582 Universal stress protein family CH48_3286 PF05247 Flagellar transcriptional activator (FlhD) CH48_3287 PF05280 Flagellar transcriptional activator (FlhC) CH48_3288 PF01618 MotA/TolQ/ExbB proton channel family CH48_3289 PF00691 OmpA family CH48_3289 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH48_329 PF12850 Calcineurin-like phosphoesterase superfamily domain CH48_3290 PF01584 CheW-like domain CH48_3290 PF01627 Hpt domain CH48_3290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3290 PF02895 Signal transducing histidine kinase, homodimeric domain CH48_3290 PF09078 CheY binding CH48_3291 PF01584 CheW-like domain CH48_3292 PF02203 Tar ligand binding domain homologue CH48_3292 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_3292 PF00672 HAMP domain CH48_3293 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_3293 PF00672 HAMP domain CH48_3293 PF02203 Tar ligand binding domain homologue CH48_3294 PF01739 CheR methyltransferase, SAM binding domain CH48_3294 PF03705 CheR methyltransferase, all-alpha domain CH48_3295 PF00072 Response regulator receiver domain CH48_3295 PF01339 CheB methylesterase CH48_3296 PF00072 Response regulator receiver domain CH48_3297 PF04344 Chemotaxis phosphatase, CheZ CH48_3299 PF01312 FlhB HrpN YscU SpaS Family CH48_3300 PF00771 FHIPEP family CH48_3301 PF06366 Flagellar protein FlhE CH48_3303 PF05130 FlgN protein CH48_3304 PF11924 Inverse autotransporter, beta-domain CH48_3304 PF07979 Intimin C-type lectin domain CH48_3304 PF09134 Invasin, domain 3 CH48_3304 PF02369 Bacterial Ig-like domain (group 1) CH48_3305 PF04316 Anti-sigma-28 factor, FlgM CH48_3306 PF13144 Chaperone for flagella basal body P-ring formation CH48_3306 PF17656 FlgA N-terminal domain CH48_3307 PF00460 Flagella basal body rod protein CH48_3308 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_3308 PF00460 Flagella basal body rod protein CH48_3309 PF03963 Flagellar hook capping protein - N-terminal region CH48_3309 PF13860 FlgD Ig-like domain CH48_3309 PF13861 FlgD Tudor-like domain CH48_331 PF01370 NAD dependent epimerase/dehydratase family CH48_331 PF08338 Domain of unknown function (DUF1731) CH48_3310 PF07559 Flagellar basal body protein FlaE CH48_3310 PF00460 Flagella basal body rod protein CH48_3310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_3311 PF00460 Flagella basal body rod protein CH48_3311 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_3312 PF00460 Flagella basal body rod protein CH48_3312 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_3313 PF02107 Flagellar L-ring protein CH48_3314 PF02119 Flagellar P-ring protein CH48_3315 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH48_3315 PF10135 Rod binding protein CH48_3316 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH48_3316 PF00460 Flagella basal body rod protein CH48_3317 PF00669 Bacterial flagellin N-terminal helical region CH48_3318 PF01311 Bacterial export proteins, family 1 CH48_3319 PF01313 Bacterial export proteins, family 3 CH48_3320 PF00813 FliP family CH48_3321 PF04347 Flagellar biosynthesis protein, FliO CH48_3322 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_3322 PF16973 Flagellar motor switch protein FliN N-terminal CH48_3323 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_3323 PF02154 Flagellar motor switch protein FliM CH48_3324 PF03748 Flagellar basal body-associated protein FliL CH48_3325 PF02120 Flagellar hook-length control protein FliK CH48_3326 PF02050 Flagellar FliJ protein CH48_3327 PF18269 T3SS EscN ATPase C-terminal domain CH48_3327 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_3328 PF02108 Flagellar assembly protein FliH CH48_3329 PF14841 FliG middle domain CH48_3329 PF01706 FliG C-terminal domain CH48_3329 PF14842 FliG N-terminal domain CH48_333 PF00005 ABC transporter CH48_3330 PF08345 Flagellar M-ring protein C-terminal CH48_3330 PF01514 Secretory protein of YscJ/FliF family CH48_3331 PF02049 Flagellar hook-basal body complex protein FliE CH48_3334 PF06183 DinI-like family CH48_3336 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_3337 PF01966 HD domain CH48_3338 PF12833 Helix-turn-helix domain CH48_3339 PF05400 Flagellar protein FliT CH48_334 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3340 PF02561 Flagellar protein FliS CH48_3341 PF07195 Flagellar hook-associated protein 2 C-terminus CH48_3341 PF07196 Flagellin hook IN motif CH48_3341 PF02465 Flagellar hook-associated protein 2 N-terminus CH48_3342 PF00700 Bacterial flagellin C-terminal helical region CH48_3342 PF08884 Flagellin D3 domain CH48_3342 PF00669 Bacterial flagellin N-terminal helical region CH48_3343 PF00700 Bacterial flagellin C-terminal helical region CH48_3343 PF08884 Flagellin D3 domain CH48_3343 PF00669 Bacterial flagellin N-terminal helical region CH48_3344 PF00669 Bacterial flagellin N-terminal helical region CH48_3344 PF08884 Flagellin D3 domain CH48_3344 PF00700 Bacterial flagellin C-terminal helical region CH48_3346 PF04542 Sigma-70 region 2 CH48_3346 PF04545 Sigma-70, region 4 CH48_3346 PF04539 Sigma-70 region 3 CH48_3347 PF02899 Phage integrase, N-terminal SAM-like domain CH48_3348 PF00291 Pyridoxal-phosphate dependent enzyme CH48_335 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3355 PF00171 Aldehyde dehydrogenase family CH48_3355 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH48_3355 PF01619 Proline dehydrogenase CH48_3355 PF14850 DNA-binding domain of Proline dehydrogenase CH48_3356 PF00474 Sodium:solute symporter family CH48_3359 PF05638 Type VI secretion system effector, Hcp CH48_336 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_3360 PF03239 Iron permease FTR1 family CH48_3361 PF13473 Cupredoxin-like domain CH48_3361 PF09375 Imelysin CH48_3362 PF04261 Dyp-type peroxidase family CH48_3363 PF03358 NADPH-dependent FMN reductase CH48_3365 PF01344 Kelch motif CH48_3366 PF00860 Permease family CH48_3369 PF01613 Flavin reductase like domain CH48_337 PF02441 Flavoprotein CH48_3370 PF00881 Nitroreductase family CH48_3371 PF12697 Alpha/beta hydrolase family CH48_3372 PF01042 Endoribonuclease L-PSP CH48_3373 PF00857 Isochorismatase family CH48_3374 PF00296 Luciferase-like monooxygenase CH48_3375 PF08362 YcdC-like protein, C-terminal region CH48_3375 PF00440 Bacterial regulatory proteins, tetR family CH48_3376 PF00324 Amino acid permease CH48_3378 PF01527 Transposase CH48_3379 PF08241 Methyltransferase domain CH48_338 PF00156 Phosphoribosyl transferase domain CH48_3382 PF00128 Alpha amylase, catalytic domain CH48_3382 PF02806 Alpha amylase, C-terminal all-beta domain CH48_3384 PF06942 GlpM protein CH48_3385 PF10769 Protein of unknown function (DUF2594) CH48_3386 PF00072 Response regulator receiver domain CH48_3386 PF00196 Bacterial regulatory proteins, luxR family CH48_3387 PF08459 UvrC Helix-hairpin-helix N-terminal CH48_3387 PF02151 UvrB/uvrC motif CH48_3387 PF01541 GIY-YIG catalytic domain CH48_3388 PF01066 CDP-alcohol phosphatidyltransferase CH48_339 PF02674 Colicin V production protein CH48_3392 PF04606 Ogr/Delta-like zinc finger CH48_3399 PF17482 Phage tail sheath C-terminal domain CH48_3399 PF04984 Phage tail sheath protein subtilisin-like domain CH48_34 PF00854 POT family CH48_340 PF05036 Sporulation related domain CH48_3401 PF04754 Putative transposase, YhgA-like CH48_3406 PF04221 RelB antitoxin CH48_3407 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CH48_341 PF08245 Mur ligase middle domain CH48_341 PF02875 Mur ligase family, glutamate ligase domain CH48_3410 PF07484 Phage Tail Collar Domain CH48_342 PF17848 Acetyl-coA carboxylase zinc finger domain CH48_342 PF01039 Carboxyl transferase domain CH48_3427 PF00872 Transposase, Mutator family CH48_3429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3429 PF03466 LysR substrate binding domain CH48_343 PF09335 SNARE associated Golgi protein CH48_3432 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_3435 PF06530 Phage antitermination protein Q CH48_3436 PF10753 Toxin GhoT_OrtT CH48_3437 PF00959 Phage lysozyme CH48_3438 PF00561 alpha/beta hydrolase fold CH48_3439 PF04391 Protein of unknown function (DUF533) CH48_344 PF01416 tRNA pseudouridine synthase CH48_3440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3440 PF03466 LysR substrate binding domain CH48_3441 PF00144 Beta-lactamase CH48_3442 PF06071 Protein of unknown function (DUF933) CH48_3442 PF01926 50S ribosome-binding GTPase CH48_3444 PF01195 Peptidyl-tRNA hydrolase CH48_3445 PF10762 Protein of unknown function (DUF2583) CH48_3447 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH48_3447 PF14572 Phosphoribosyl synthetase-associated domain CH48_3448 PF00288 GHMP kinases N terminal domain CH48_3448 PF08544 GHMP kinases C terminal CH48_3449 PF03550 Outer membrane lipoprotein LolB CH48_345 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH48_345 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH48_3450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH48_3450 PF01488 Shikimate / quinate 5-dehydrogenase CH48_3450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH48_3451 PF03462 PCRF domain CH48_3451 PF00472 RF-1 domain CH48_3452 PF13847 Methyltransferase domain CH48_3452 PF17827 PrmC N-terminal domain CH48_3453 PF04247 Invasion gene expression up-regulator, SirB CH48_3454 PF13369 Transglutaminase-like superfamily CH48_3455 PF00793 DAHP synthetase I family CH48_3456 PF00916 Sulfate permease family CH48_3456 PF01740 STAS domain CH48_3458 PF00990 Diguanylate cyclase, GGDEF domain CH48_3460 PF03009 Glycerophosphoryl diester phosphodiesterase family CH48_3462 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_3463 PF02811 PHP domain CH48_3464 PF02613 Nitrate reductase delta subunit CH48_3465 PF07273 Protein of unknown function (DUF1439) CH48_3466 PF07690 Major Facilitator Superfamily CH48_3469 PF13302 Acetyltransferase (GNAT) domain CH48_3470 PF04337 Protein of unknown function, DUF480 CH48_3471 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_3472 PF03023 Lipid II flippase MurJ CH48_3473 PF01699 Sodium/calcium exchanger protein CH48_3477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3477 PF03466 LysR substrate binding domain CH48_3478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3478 PF07730 Histidine kinase CH48_3478 PF00672 HAMP domain CH48_3478 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH48_3479 PF02322 Cytochrome bd terminal oxidase subunit II CH48_348 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_348 PF11890 Domain of unknown function (DUF3410) CH48_348 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_3480 PF01654 Cytochrome bd terminal oxidase subunit I CH48_3481 PF00155 Aminotransferase class I and II CH48_3481 PF00392 Bacterial regulatory proteins, gntR family CH48_3482 PF00202 Aminotransferase class-III CH48_3483 PF04958 Arginine N-succinyltransferase beta subunit CH48_3484 PF00171 Aldehyde dehydrogenase family CH48_3485 PF04996 Succinylarginine dihydrolase CH48_3486 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH48_3487 PF00267 Gram-negative porin CH48_3488 PF00665 Integrase core domain CH48_3488 PF13333 Integrase core domain CH48_3488 PF13276 HTH-like domain CH48_3492 PF01979 Amidohydrolase family CH48_3493 PF07702 UTRA domain CH48_3493 PF00392 Bacterial regulatory proteins, gntR family CH48_3494 PF01979 Amidohydrolase family CH48_3495 PF05962 HutD CH48_3496 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH48_350 PF00892 EamA-like transporter family CH48_3500 PF01476 LysM domain CH48_3500 PF01551 Peptidase family M23 CH48_3501 PF01116 Fructose-bisphosphate aldolase class-II CH48_3502 PF01380 SIS domain CH48_3503 PF03610 PTS system fructose IIA component CH48_3504 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_3505 PF03609 PTS system sorbose-specific iic component CH48_3506 PF03830 PTS system sorbose subfamily IIB component CH48_3507 PF08013 Tagatose 6 phosphate kinase CH48_3508 PF00455 DeoR C terminal sensor domain CH48_3508 PF08220 DeoR-like helix-turn-helix domain CH48_351 PF00892 EamA-like transporter family CH48_3512 PF00849 RNA pseudouridylate synthase CH48_3512 PF01479 S4 domain CH48_3513 PF03616 Sodium/glutamate symporter CH48_3515 PF01548 Transposase CH48_3515 PF02371 Transposase IS116/IS110/IS902 family CH48_3516 PF02371 Transposase IS116/IS110/IS902 family CH48_3516 PF01548 Transposase CH48_3517 PF08003 Protein of unknown function (DUF1698) CH48_3518 PF13649 Methyltransferase domain CH48_3519 PF01124 MAPEG family CH48_352 PF00155 Aminotransferase class I and II CH48_3520 PF01904 Protein of unknown function DUF72 CH48_3521 PF00857 Isochorismatase family CH48_3522 PF01336 OB-fold nucleic acid binding domain CH48_3522 PF02938 GAD domain CH48_3522 PF00152 tRNA synthetases class II (D, K and N) CH48_3523 PF00293 NUDIX domain CH48_3524 PF01709 Transcriptional regulator CH48_3525 PF02075 Crossover junction endodeoxyribonuclease RuvC CH48_3526 PF01330 RuvA N terminal domain CH48_3526 PF07499 RuvA, C-terminal domain CH48_3527 PF05491 RuvB C-terminal winged helix domain CH48_3527 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH48_3527 PF17864 RuvB AAA lid domain CH48_3528 PF00854 POT family CH48_3529 PF00950 ABC 3 transport family CH48_353 PF00578 AhpC/TSA family CH48_3530 PF00005 ABC transporter CH48_3531 PF01297 Zinc-uptake complex component A periplasmic CH48_3532 PF01551 Peptidase family M23 CH48_3532 PF08525 Opacity-associated protein A N-terminal motif CH48_3532 PF01476 LysM domain CH48_3533 PF03279 Bacterial lipid A biosynthesis acyltransferase CH48_3535 PF00872 Transposase, Mutator family CH48_3536 PF00224 Pyruvate kinase, barrel domain CH48_3536 PF02887 Pyruvate kinase, alpha/beta domain CH48_3537 PF01380 SIS domain CH48_3537 PF01418 Helix-turn-helix domain, rpiR family CH48_3538 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH48_3538 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH48_3539 PF01081 KDPG and KHG aldolase CH48_3540 PF00893 Small Multidrug Resistance protein CH48_3541 PF00893 Small Multidrug Resistance protein CH48_3542 PF01042 Endoribonuclease L-PSP CH48_3543 PF04851 Type III restriction enzyme, res subunit CH48_3543 PF13307 Helicase C-terminal domain CH48_3544 PF00814 Glycoprotease family CH48_3545 PF03843 Outer membrane lipoprotein Slp family CH48_3546 PF13193 AMP-binding enzyme C-terminal domain CH48_3546 PF00501 AMP-binding enzyme CH48_3547 PF00570 HRDC domain CH48_3547 PF01612 3'-5' exonuclease CH48_3548 PF03776 Septum formation topological specificity factor MinE CH48_3549 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH48_355 PF11412 Disulphide bond corrector protein DsbC CH48_355 PF02683 Cytochrome C biogenesis protein transmembrane region CH48_3550 PF03775 Septum formation inhibitor MinC, C-terminal domain CH48_3550 PF05209 Septum formation inhibitor MinC, N-terminal domain CH48_3552 PF05166 YcgL domain CH48_3553 PF13406 Transglycosylase SLT domain CH48_3554 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH48_3555 PF03692 Putative zinc- or iron-chelating domain CH48_3560 PF00924 Mechanosensitive ion channel CH48_3561 PF02798 Glutathione S-transferase, N-terminal domain CH48_3561 PF14834 Glutathione S-transferase, C-terminal domain CH48_3566 PF07351 Protein of unknown function (DUF1480) CH48_3567 PF01590 GAF domain CH48_3567 PF00990 Diguanylate cyclase, GGDEF domain CH48_3567 PF00360 Phytochrome region CH48_3567 PF00563 EAL domain CH48_357 PF03600 Citrate transporter CH48_3574 PF07690 Major Facilitator Superfamily CH48_3575 PF03466 LysR substrate binding domain CH48_3575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3576 PF02470 MlaD protein CH48_3577 PF04403 Paraquat-inducible protein A CH48_3578 PF13185 GAF domain CH48_3579 PF17516 ProQ C-terminal domain CH48_3579 PF04352 ProQ/FINO family CH48_358 PF00328 Histidine phosphatase superfamily (branch 2) CH48_3580 PF03572 Peptidase family S41 CH48_3580 PF17804 Tail specific protease N-terminal domain CH48_3580 PF11818 C-terminal domain of tail specific protease (DUF3340) CH48_3580 PF00595 PDZ domain CH48_3581 PF01435 Peptidase family M48 CH48_3582 PF07690 Major Facilitator Superfamily CH48_3583 PF14583 Oligogalacturonate lyase CH48_3584 PF01614 Bacterial transcriptional regulator CH48_3584 PF09339 IclR helix-turn-helix domain CH48_3585 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_3587 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH48_3588 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH48_3589 PF01547 Bacterial extracellular solute-binding protein CH48_359 PF00356 Bacterial regulatory proteins, lacI family CH48_3590 PF17912 MalK OB fold domain CH48_3590 PF00005 ABC transporter CH48_3590 PF03459 TOBE domain CH48_3591 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3592 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3593 PF06917 Periplasmic pectate lyase CH48_3595 PF04962 KduI/IolB family CH48_3596 PF07883 Cupin domain CH48_3597 PF13419 Haloacid dehalogenase-like hydrolase CH48_3598 PF14002 YniB-like protein CH48_3599 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH48_3599 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH48_360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_3600 PF03466 LysR substrate binding domain CH48_3600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3601 PF00378 Enoyl-CoA hydratase/isomerase CH48_3603 PF02310 B12 binding domain CH48_3603 PF01642 Methylmalonyl-CoA mutase CH48_3605 PF00950 ABC 3 transport family CH48_3606 PF00950 ABC 3 transport family CH48_3607 PF00005 ABC transporter CH48_3608 PF01297 Zinc-uptake complex component A periplasmic CH48_3609 PF01464 Transglycosylase SLT domain CH48_361 PF02378 Phosphotransferase system, EIIC CH48_3610 PF01914 MarC family integral membrane protein CH48_3615 PF04474 Protein of unknown function (DUF554) CH48_3616 PF13619 KTSC domain CH48_3617 PF02824 TGS domain CH48_3617 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_3617 PF03129 Anticodon binding domain CH48_3617 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_3618 PF05198 Translation initiation factor IF-3, N-terminal domain CH48_3618 PF00707 Translation initiation factor IF-3, C-terminal domain CH48_3619 PF01632 Ribosomal protein L35 CH48_362 PF00232 Glycosyl hydrolase family 1 CH48_3620 PF00453 Ribosomal protein L20 CH48_3621 PF01409 tRNA synthetases class II core domain (F) CH48_3621 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH48_3622 PF01588 Putative tRNA binding domain CH48_3622 PF03483 B3/4 domain CH48_3622 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH48_3622 PF03484 tRNA synthetase B5 domain CH48_3622 PF03147 Ferredoxin-fold anticodon binding domain CH48_3623 PF00216 Bacterial DNA-binding protein CH48_3624 PF05154 TM2 domain CH48_3626 PF01032 FecCD transport family CH48_3627 PF00255 Glutathione peroxidase CH48_3628 PF00005 ABC transporter CH48_3629 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH48_363 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_3630 PF00535 Glycosyl transferase family 2 CH48_3631 PF01370 NAD dependent epimerase/dehydratase family CH48_3631 PF02911 Formyl transferase, C-terminal domain CH48_3631 PF00551 Formyl transferase CH48_3632 PF01522 Polysaccharide deacetylase CH48_3633 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH48_3634 PF00892 EamA-like transporter family CH48_3636 PF00877 NlpC/P60 family CH48_3637 PF03099 Biotin/lipoate A/B protein ligase family CH48_3637 PF10437 Bacterial lipoate protein ligase C-terminus CH48_3638 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH48_3639 PF01497 Periplasmic binding protein CH48_3640 PF05171 Haemin-degrading HemS.ChuX domain CH48_3641 PF07715 TonB-dependent Receptor Plug Domain CH48_3641 PF00593 TonB dependent receptor CH48_3642 PF00793 DAHP synthetase I family CH48_3643 PF03618 Kinase/pyrophosphorylase CH48_3645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH48_3645 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_3645 PF00391 PEP-utilising enzyme, mobile domain CH48_3646 PF01594 AI-2E family transporter CH48_3647 PF01565 FAD binding domain CH48_3647 PF02913 FAD linked oxidases, C-terminal domain CH48_3647 PF13183 4Fe-4S dicluster domain CH48_3649 PF03061 Thioesterase superfamily CH48_365 PF01177 Asp/Glu/Hydantoin racemase CH48_3650 PF01521 Iron-sulphur cluster biosynthesis CH48_3651 PF01458 Uncharacterized protein family (UPF0051) CH48_3652 PF00005 ABC transporter CH48_3653 PF01458 Uncharacterized protein family (UPF0051) CH48_3654 PF00266 Aminotransferase class-V CH48_3655 PF02657 Fe-S metabolism associated domain CH48_3656 PF03734 L,D-transpeptidase catalytic domain CH48_3656 PF17969 L,D-transpeptidase C-terminal domain CH48_3656 PF01476 LysM domain CH48_3657 PF04728 Lipoprotein leucine-zipper CH48_3658 PF00224 Pyruvate kinase, barrel domain CH48_3658 PF02887 Pyruvate kinase, alpha/beta domain CH48_366 PF00990 Diguanylate cyclase, GGDEF domain CH48_366 PF17151 Periplasmic sensor domain CH48_3662 PF01554 MatE CH48_3663 PF00677 Lumazine binding domain CH48_3665 PF07690 Major Facilitator Superfamily CH48_3666 PF03466 LysR substrate binding domain CH48_3666 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3667 PF00356 Bacterial regulatory proteins, lacI family CH48_3669 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH48_3669 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH48_367 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_367 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_3670 PF00877 NlpC/P60 family CH48_3671 PF00462 Glutaredoxin CH48_3672 PF00929 Exonuclease CH48_3673 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH48_3674 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH48_3675 PF00440 Bacterial regulatory proteins, tetR family CH48_3675 PF16925 Tetracyclin repressor-like, C-terminal domain CH48_3676 PF08019 Phosphoethanolamine transferase EptA/EptB CH48_3676 PF00884 Sulfatase CH48_3677 PF06945 Protein of unknown function (DUF1289) CH48_3678 PF00248 Aldo/keto reductase family CH48_3679 PF04632 Fusaric acid resistance protein family CH48_368 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH48_368 PF01266 FAD dependent oxidoreductase CH48_3680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_3680 PF00529 HlyD membrane-fusion protein of T1SS CH48_3681 PF07869 Protein of unknown function (DUF1656) CH48_3682 PF01047 MarR family CH48_3683 PF05433 Glycine zipper 2TM domain CH48_3685 PF03702 Anhydro-N-acetylmuramic acid kinase CH48_3686 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH48_3687 PF01243 Pyridoxamine 5'-phosphate oxidase CH48_3687 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH48_3688 PF00579 tRNA synthetases class I (W and Y) CH48_3688 PF01479 S4 domain CH48_3689 PF08543 Phosphomethylpyrimidine kinase CH48_369 PF08891 YfcL protein CH48_3690 PF00043 Glutathione S-transferase, C-terminal domain CH48_3690 PF02798 Glutathione S-transferase, N-terminal domain CH48_3691 PF11656 YjbD family (DUF3811) CH48_3692 PF04893 Yip1 domain CH48_3694 PF00854 POT family CH48_3695 PF03466 LysR substrate binding domain CH48_3695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3699 PF00005 ABC transporter CH48_370 PF04315 Elongation factor P hydroxylase CH48_3700 PF00005 ABC transporter CH48_3700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_3701 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_3701 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3702 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3703 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_3704 PF02917 Pertussis toxin, subunit 1 CH48_3706 PF00158 Sigma-54 interaction domain CH48_3706 PF02954 Bacterial regulatory protein, Fis family CH48_3707 PF04012 PspA/IM30 family CH48_3708 PF06667 Phage shock protein B CH48_3709 PF04024 PspC domain CH48_371 PF01925 Sulfite exporter TauE/SafE CH48_3711 PF04317 YcjX-like family, DUF463 CH48_3712 PF05128 Domain of unknown function (DUF697) CH48_3715 PF18024 Helix-turn-helix domain CH48_3715 PF00158 Sigma-54 interaction domain CH48_3716 PF08534 Redoxin CH48_3717 PF00246 Zinc carboxypeptidase CH48_3718 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH48_3718 PF13378 Enolase C-terminal domain-like CH48_3719 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_372 PF03411 Penicillin-insensitive murein endopeptidase CH48_3720 PF01544 CorA-like Mg2+ transporter protein CH48_3721 PF01171 PP-loop family CH48_3722 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CH48_3723 PF10371 Domain of unknown function CH48_3723 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH48_3723 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_3723 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH48_3723 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH48_3724 PF00893 Small Multidrug Resistance protein CH48_3725 PF02308 MgtC family CH48_3726 PF03891 Domain of unknown function (DUF333) CH48_3727 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH48_3727 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH48_3728 PF11739 Dicarboxylate transport CH48_3729 PF13617 YnbE-like lipoprotein CH48_373 PF01264 Chorismate synthase CH48_3730 PF07027 Protein of unknown function (DUF1318) CH48_3731 PF02525 Flavodoxin-like fold CH48_3732 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH48_3732 PF00271 Helicase conserved C-terminal domain CH48_3732 PF04408 Helicase associated domain (HA2) CH48_3732 PF11898 Domain of unknown function (DUF3418) CH48_3732 PF00270 DEAD/DEAH box helicase CH48_3735 PF00089 Trypsin CH48_3737 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH48_3738 PF00672 HAMP domain CH48_3738 PF00512 His Kinase A (phospho-acceptor) domain CH48_3738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_3739 PF00072 Response regulator receiver domain CH48_3739 PF00486 Transcriptional regulatory protein, C terminal CH48_374 PF05175 Methyltransferase small domain CH48_3741 PF13520 Amino acid permease CH48_3742 PF07338 Protein of unknown function (DUF1471) CH48_3743 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH48_3743 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH48_3743 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH48_3744 PF02233 NAD(P) transhydrogenase beta subunit CH48_3745 PF00582 Universal stress protein family CH48_3746 PF00027 Cyclic nucleotide-binding domain CH48_3746 PF13545 Crp-like helix-turn-helix domain CH48_3747 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH48_3747 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH48_3750 PF06445 GyrI-like small molecule binding domain CH48_3752 PF00245 Alkaline phosphatase CH48_3753 PF00294 pfkB family carbohydrate kinase CH48_3755 PF07690 Major Facilitator Superfamily CH48_3757 PF13419 Haloacid dehalogenase-like hydrolase CH48_3758 PF01842 ACT domain CH48_3759 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_3759 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_3759 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_3761 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_3766 PF07690 Major Facilitator Superfamily CH48_3767 PF00459 Inositol monophosphatase family CH48_3768 PF00356 Bacterial regulatory proteins, lacI family CH48_3769 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH48_3769 PF01048 Phosphorylase superfamily CH48_377 PF01713 Smr domain CH48_3770 PF13700 Domain of unknown function (DUF4158) CH48_3770 PF01526 Tn3 transposase DDE domain CH48_3771 PF00239 Resolvase, N terminal domain CH48_3771 PF02796 Helix-turn-helix domain of resolvase CH48_3772 PF13784 Fic/DOC family N-terminal CH48_3772 PF02661 Fic/DOC family CH48_3774 PF03466 LysR substrate binding domain CH48_3774 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3777 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_3778 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3779 PF00528 Binding-protein-dependent transport system inner membrane component CH48_378 PF00300 Histidine phosphatase superfamily (branch 1) CH48_3780 PF01037 Lrp/AsnC ligand binding domain CH48_3785 PF02798 Glutathione S-transferase, N-terminal domain CH48_379 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH48_379 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH48_379 PF00378 Enoyl-CoA hydratase/isomerase CH48_3792 PF03958 Bacterial type II/III secretion system short domain CH48_3792 PF00263 Bacterial type II and III secretion system protein CH48_3792 PF03958 Bacterial type II/III secretion system short domain CH48_3792 PF00263 Bacterial type II and III secretion system protein CH48_38 PF07119 Protein of unknown function (DUF1375) CH48_380 PF02803 Thiolase, C-terminal domain CH48_380 PF00108 Thiolase, N-terminal domain CH48_381 PF04175 Protein of unknown function (DUF406) CH48_3817 PF07338 Protein of unknown function (DUF1471) CH48_3818 PF00106 short chain dehydrogenase CH48_3819 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH48_382 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH48_3821 PF06932 Protein of unknown function (DUF1283) CH48_3822 PF06649 Protein of unknown function (DUF1161) CH48_3824 PF00654 Voltage gated chloride channel CH48_3826 PF00480 ROK family CH48_3827 PF03466 LysR substrate binding domain CH48_3827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3828 PF07690 Major Facilitator Superfamily CH48_383 PF04333 MlaA lipoprotein CH48_3831 PF05472 DNA replication terminus site-binding protein (Ter protein) CH48_3833 PF00206 Lyase CH48_3833 PF10415 Fumarase C C-terminus CH48_3834 PF01238 Phosphomannose isomerase type I CH48_3835 PF06097 Bacterial protein of unknown function (DUF945) CH48_3836 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_3837 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_3837 PF00356 Bacterial regulatory proteins, lacI family CH48_3838 PF00367 phosphotransferase system, EIIB CH48_3838 PF02378 Phosphotransferase system, EIIC CH48_3839 PF00155 Aminotransferase class I and II CH48_384 PF03918 Cytochrome C biogenesis protein CH48_3840 PF00962 Adenosine/AMP deaminase CH48_3841 PF13593 SBF-like CPA transporter family (DUF4137) CH48_3842 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH48_3842 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH48_3843 PF12833 Helix-turn-helix domain CH48_3843 PF02311 AraC-like ligand binding domain CH48_3844 PF02653 Branched-chain amino acid transport system / permease component CH48_3845 PF00005 ABC transporter CH48_3846 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_3847 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH48_3848 PF11762 L-arabinose isomerase C-terminal domain CH48_3848 PF02610 L-arabinose isomerase CH48_3849 PF02463 RecF/RecN/SMC N terminal domain CH48_385 PF03918 Cytochrome C biogenesis protein CH48_3850 PF03412 Peptidase C39 family CH48_3850 PF00005 ABC transporter CH48_3850 PF00664 ABC transporter transmembrane region CH48_3854 PF01268 Formate--tetrahydrofolate ligase CH48_3855 PF10754 Protein of unknown function (DUF2569) CH48_3856 PF02508 Rnf-Nqr subunit, membrane protein CH48_3857 PF04060 Putative Fe-S cluster CH48_3858 PF13237 4Fe-4S dicluster domain CH48_3858 PF10531 SLBB domain CH48_3858 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH48_3858 PF13375 RnfC Barrel sandwich hybrid domain CH48_386 PF08534 Redoxin CH48_3861 PF06445 GyrI-like small molecule binding domain CH48_3861 PF12833 Helix-turn-helix domain CH48_3862 PF03116 NQR2, RnfD, RnfE family CH48_3863 PF04205 FMN-binding domain CH48_3864 PF02508 Rnf-Nqr subunit, membrane protein CH48_3865 PF00633 Helix-hairpin-helix motif CH48_3865 PF10576 Iron-sulfur binding domain of endonuclease III CH48_3865 PF00730 HhH-GPD superfamily base excision DNA repair protein CH48_387 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH48_387 PF01578 Cytochrome C assembly protein CH48_3871 PF00384 Molybdopterin oxidoreductase CH48_3872 PF08206 Ribonuclease B OB domain CH48_3872 PF00773 RNB domain CH48_3872 PF00575 S1 RNA binding domain CH48_3873 PF02554 Carbon starvation protein CstA CH48_3873 PF13722 5TM C-terminal transporter carbon starvation CstA CH48_3874 PF04328 Selenoprotein, putative CH48_3875 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH48_3876 PF00455 DeoR C terminal sensor domain CH48_3876 PF08220 DeoR-like helix-turn-helix domain CH48_3878 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_3879 PF05433 Glycine zipper 2TM domain CH48_388 PF03100 CcmE CH48_3881 PF01253 Translation initiation factor SUI1 CH48_3882 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH48_3883 PF07338 Protein of unknown function (DUF1471) CH48_3884 PF03594 Benzoate membrane transport protein CH48_3885 PF07883 Cupin domain CH48_3885 PF01381 Helix-turn-helix CH48_3887 PF18073 Rubredoxin metal binding domain CH48_3888 PF06305 Lipopolysaccharide assembly protein A domain CH48_3889 PF01569 PAP2 superfamily CH48_389 PF04995 Heme exporter protein D (CcmD) CH48_3890 PF00925 GTP cyclohydrolase II CH48_3892 PF00694 Aconitase C-terminal domain CH48_3892 PF00330 Aconitase family (aconitate hydratase) CH48_3894 PF03466 LysR substrate binding domain CH48_3894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3895 PF01396 Topoisomerase DNA binding C4 zinc finger CH48_3895 PF01751 Toprim domain CH48_3895 PF08272 Topoisomerase I zinc-ribbon-like CH48_3895 PF01131 DNA topoisomerase CH48_3896 PF10692 Protein of unknown function (DUF2498) CH48_3897 PF08496 Peptidase family S49 N-terminal CH48_3897 PF01343 Peptidase family S49 CH48_3898 PF00106 short chain dehydrogenase CH48_3899 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH48_3899 PF12557 Cob(I)alamin adenosyltransferase N terminal CH48_39 PF00535 Glycosyl transferase family 2 CH48_390 PF01578 Cytochrome C assembly protein CH48_3901 PF01479 S4 domain CH48_3901 PF00849 RNA pseudouridylate synthase CH48_3902 PF01300 Telomere recombination CH48_3903 PF02811 PHP domain CH48_3904 PF04715 Anthranilate synthase component I, N terminal region CH48_3904 PF00425 chorismate binding enzyme CH48_3905 PF00117 Glutamine amidotransferase class-I CH48_3906 PF00591 Glycosyl transferase family, a/b domain CH48_3906 PF02885 Glycosyl transferase family, helical bundle domain CH48_3907 PF00218 Indole-3-glycerol phosphate synthase CH48_3907 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH48_3908 PF00291 Pyridoxal-phosphate dependent enzyme CH48_3909 PF00290 Tryptophan synthase alpha chain CH48_391 PF03379 CcmB protein CH48_3911 PF03922 OmpW family CH48_3912 PF03692 Putative zinc- or iron-chelating domain CH48_3915 PF04279 Intracellular septation protein A CH48_3916 PF03061 Thioesterase superfamily CH48_3917 PF03544 Gram-negative bacterial TonB protein C-terminal CH48_3918 PF03795 YCII-related domain CH48_392 PF00005 ABC transporter CH48_3922 PF13396 Phospholipase_D-nuclease N-terminal CH48_3922 PF13091 PLD-like domain CH48_3923 PF04269 Protein of unknown function, DUF440 CH48_3924 PF00005 ABC transporter CH48_3924 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_3925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH48_3925 PF00005 ABC transporter CH48_3926 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_3926 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3927 PF00528 Binding-protein-dependent transport system inner membrane component CH48_3928 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_3929 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_3930 PF01914 MarC family integral membrane protein CH48_3931 PF00171 Aldehyde dehydrogenase family CH48_3931 PF00465 Iron-containing alcohol dehydrogenase CH48_3932 PF00265 Thymidine kinase CH48_3933 PF00816 H-NS histone family CH48_3934 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH48_3934 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH48_3934 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH48_3935 PF00072 Response regulator receiver domain CH48_3936 PF01734 Patatin-like phospholipase CH48_3937 PF02810 SEC-C motif CH48_3938 PF00551 Formyl transferase CH48_3938 PF01842 ACT domain CH48_394 PF02685 Glucokinase CH48_3942 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3942 PF03466 LysR substrate binding domain CH48_3943 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_3944 PF00293 NUDIX domain CH48_3945 PF07383 Protein of unknown function (DUF1496) CH48_3946 PF01751 Toprim domain CH48_3946 PF01131 DNA topoisomerase CH48_3947 PF02769 AIR synthase related protein, C-terminal domain CH48_3947 PF00586 AIR synthase related protein, N-terminal domain CH48_3948 PF00881 Nitroreductase family CH48_3949 PF01343 Peptidase family S49 CH48_3950 PF00710 Asparaginase, N-terminal CH48_3950 PF17763 Glutaminase/Asparaginase C-terminal domain CH48_3951 PF00857 Isochorismatase family CH48_3953 PF07023 Protein of unknown function (DUF1315) CH48_3954 PF01641 SelR domain CH48_3955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH48_3955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_3956 PF01263 Aldose 1-epimerase CH48_3957 PF06629 MltA-interacting protein MipA CH48_3958 PF08298 PrkA AAA domain CH48_3958 PF06798 PrkA serine protein kinase C-terminal domain CH48_3959 PF04285 Protein of unknown function (DUF444) CH48_396 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_396 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_396 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_3962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3962 PF03466 LysR substrate binding domain CH48_3963 PF02678 Pirin CH48_3963 PF05726 Pirin C-terminal cupin domain CH48_3964 PF00563 EAL domain CH48_3964 PF00990 Diguanylate cyclase, GGDEF domain CH48_3964 PF13426 PAS domain CH48_3965 PF07690 Major Facilitator Superfamily CH48_3966 PF01168 Alanine racemase, N-terminal domain CH48_3966 PF00842 Alanine racemase, C-terminal domain CH48_3967 PF01266 FAD dependent oxidoreductase CH48_3968 PF04293 SpoVR like protein CH48_3969 PF07840 FadR C-terminal domain CH48_3969 PF00392 Bacterial regulatory proteins, gntR family CH48_397 PF03466 LysR substrate binding domain CH48_397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3970 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH48_3971 PF02600 Disulfide bond formation protein DsbB CH48_3972 PF03932 CutC family CH48_3974 PF06185 YecM protein CH48_3975 PF03485 Arginyl tRNA synthetase N terminal domain CH48_3975 PF05746 DALR anticodon binding domain CH48_3975 PF00750 tRNA synthetases class I (R) CH48_3977 PF02562 PhoH-like protein CH48_3979 PF13994 PgaD-like protein CH48_398 PF00248 Aldo/keto reductase family CH48_3980 PF00535 Glycosyl transferase family 2 CH48_3981 PF14883 Hypothetical glycosyl hydrolase family 13 CH48_3981 PF01522 Polysaccharide deacetylase CH48_3984 PF00557 Metallopeptidase family M24 CH48_3985 PF06276 Ferric iron reductase FhuF-like transporter CH48_3985 PF11575 FhuF 2Fe-2S C-terminal domain CH48_3986 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH48_3986 PF01411 tRNA synthetases class II (A) CH48_3986 PF02272 DHHA1 domain CH48_3987 PF03466 LysR substrate binding domain CH48_3987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_3988 PF03848 Tellurite resistance protein TehB CH48_3988 PF09313 Domain of unknown function (DUF1971) CH48_3990 PF00578 AhpC/TSA family CH48_3991 PF02687 FtsX-like permease family CH48_3991 PF12704 MacB-like periplasmic core domain CH48_3991 PF00005 ABC transporter CH48_3993 PF12704 MacB-like periplasmic core domain CH48_3993 PF00005 ABC transporter CH48_3993 PF02687 FtsX-like permease family CH48_3995 PF10634 Fe2+ transport protein CH48_3996 PF03239 Iron permease FTR1 family CH48_3999 PF04960 Glutaminase CH48_400 PF01566 Natural resistance-associated macrophage protein CH48_4000 PF01261 Xylose isomerase-like TIM barrel CH48_4001 PF00596 Class II Aldolase and Adducin N-terminal domain CH48_4002 PF07005 Sugar-binding N-terminal domain CH48_4002 PF17042 Nucleotide-binding C-terminal domain CH48_4003 PF00455 DeoR C terminal sensor domain CH48_4003 PF08220 DeoR-like helix-turn-helix domain CH48_4004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_4004 PF17203 Single cache domain 3 CH48_4004 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH48_4004 PF00989 PAS fold CH48_4005 PF00072 Response regulator receiver domain CH48_4006 PF03390 2-hydroxycarboxylate transporter family CH48_4007 PF00324 Amino acid permease CH48_401 PF07670 Nucleoside recognition CH48_401 PF07662 Na+ dependent nucleoside transporter C-terminus CH48_401 PF01773 Na+ dependent nucleoside transporter N-terminus CH48_4010 PF07690 Major Facilitator Superfamily CH48_4013 PF00872 Transposase, Mutator family CH48_4014 PF00652 Ricin-type beta-trefoil lectin domain CH48_4015 PF08242 Methyltransferase domain CH48_4016 PF00872 Transposase, Mutator family CH48_4025 PF02899 Phage integrase, N-terminal SAM-like domain CH48_4025 PF00589 Phage integrase family CH48_4026 PF10709 Protein of unknown function (DUF2511) CH48_4027 PF05425 Copper resistance protein D CH48_4028 PF04234 CopC domain CH48_4029 PF00210 Ferritin-like domain CH48_4030 PF06440 DNA polymerase III, theta subunit CH48_4031 PF00561 alpha/beta hydrolase fold CH48_4033 PF00929 Exonuclease CH48_4034 PF00326 Prolyl oligopeptidase family CH48_4034 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH48_4035 PF13995 YebF-like protein CH48_4037 PF07130 YebG protein CH48_4038 PF03880 DbpA RNA binding domain CH48_4038 PF00270 DEAD/DEAH box helicase CH48_4038 PF00271 Helicase conserved C-terminal domain CH48_4039 PF02222 ATP-grasp domain CH48_4040 PF03701 Uncharacterised protein family (UPF0181) CH48_4041 PF04715 Anthranilate synthase component I, N terminal region CH48_4041 PF00425 chorismate binding enzyme CH48_4042 PF00293 NUDIX domain CH48_4043 PF03315 Serine dehydratase beta chain CH48_4043 PF03313 Serine dehydratase alpha chain CH48_4045 PF02048 Heat-stable enterotoxin ST CH48_4046 PF03471 Transporter associated domain CH48_4046 PF03741 Integral membrane protein TerC family CH48_4047 PF03610 PTS system fructose IIA component CH48_4047 PF03830 PTS system sorbose subfamily IIB component CH48_4048 PF03609 PTS system sorbose-specific iic component CH48_4049 PF03613 PTS system mannose/fructose/sorbose family IID component CH48_4050 PF06173 Protein of unknown function (DUF986) CH48_4051 PF02659 Putative manganese efflux pump CH48_4052 PF07715 TonB-dependent Receptor Plug Domain CH48_4052 PF00593 TonB dependent receptor CH48_4053 PF08447 PAS fold CH48_4053 PF00563 EAL domain CH48_4053 PF13426 PAS domain CH48_4053 PF00990 Diguanylate cyclase, GGDEF domain CH48_4053 PF08448 PAS fold CH48_4053 PF05231 MASE1 CH48_4055 PF13847 Methyltransferase domain CH48_4056 PF00905 Penicillin binding protein transpeptidase domain CH48_4056 PF03717 Penicillin-binding Protein dimerisation domain CH48_4058 PF00313 'Cold-shock' DNA-binding domain CH48_4059 PF10736 Protein of unknown function (DUF2627) CH48_406 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_4060 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH48_4061 PF00324 Amino acid permease CH48_4064 PF13974 YebO-like protein CH48_4065 PF13996 YobH-like protein CH48_4066 PF10964 Protein of unknown function (DUF2766) CH48_4068 PF12833 Helix-turn-helix domain CH48_4070 PF13520 Amino acid permease CH48_4072 PF00664 ABC transporter transmembrane region CH48_4072 PF00005 ABC transporter CH48_4074 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_4076 PF01590 GAF domain CH48_4076 PF00563 EAL domain CH48_4076 PF00990 Diguanylate cyclase, GGDEF domain CH48_4076 PF00360 Phytochrome region CH48_4078 PF06411 HdeA/HdeB family CH48_4079 PF07007 Lysozyme inhibitor LprI CH48_4081 PF00892 EamA-like transporter family CH48_4086 PF01638 HxlR-like helix-turn-helix CH48_4087 PF05368 NmrA-like family CH48_4088 PF01053 Cys/Met metabolism PLP-dependent enzyme CH48_4090 PF00717 Peptidase S24-like CH48_4091 PF11799 impB/mucB/samB family C-terminal domain CH48_4091 PF00817 impB/mucB/samB family CH48_4091 PF13438 Domain of unknown function (DUF4113) CH48_4092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_4092 PF08447 PAS fold CH48_4094 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_4094 PF00356 Bacterial regulatory proteins, lacI family CH48_4095 PF08244 Glycosyl hydrolases family 32 C terminal CH48_4095 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH48_4096 PF01306 LacY proton/sugar symporter CH48_41 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH48_4100 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_4106 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_4107 PF00849 RNA pseudouridylate synthase CH48_4108 PF00293 NUDIX domain CH48_411 PF12843 Putative quorum-sensing-regulated virulence factor CH48_4110 PF04356 Protein of unknown function (DUF489) CH48_4111 PF00206 Lyase CH48_4111 PF08328 Adenylosuccinate lyase C-terminal CH48_4113 PF00486 Transcriptional regulatory protein, C terminal CH48_4113 PF00072 Response regulator receiver domain CH48_4114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_4114 PF08918 PhoQ Sensor CH48_4115 PF08007 Cupin superfamily protein CH48_4116 PF07687 Peptidase dimerisation domain CH48_4116 PF01546 Peptidase family M20/M25/M40 CH48_4117 PF02146 Sir2 family CH48_4118 PF00480 ROK family CH48_4119 PF02687 FtsX-like permease family CH48_4119 PF12704 MacB-like periplasmic core domain CH48_412 PF12826 Helix-hairpin-helix motif CH48_412 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH48_412 PF03120 NAD-dependent DNA ligase OB-fold domain CH48_412 PF01653 NAD-dependent DNA ligase adenylation domain CH48_412 PF00533 BRCA1 C Terminus (BRCT) domain CH48_4120 PF00005 ABC transporter CH48_4121 PF02687 FtsX-like permease family CH48_4121 PF12704 MacB-like periplasmic core domain CH48_4122 PF03461 TRCF domain CH48_4122 PF02559 CarD-like/TRCF domain CH48_4122 PF00270 DEAD/DEAH box helicase CH48_4122 PF00271 Helicase conserved C-terminal domain CH48_4122 PF17757 UvrB interaction domain CH48_4123 PF05433 Glycine zipper 2TM domain CH48_4125 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_4126 PF05728 Uncharacterised protein family (UPF0227) CH48_4127 PF00933 Glycosyl hydrolase family 3 N terminal domain CH48_4128 PF01636 Phosphotransferase enzyme family CH48_4129 PF13036 Peptidoglycan-synthase activator LpoB CH48_4129 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH48_413 PF04354 ZipA, C-terminal FtsZ-binding domain CH48_4130 PF07233 Protein of unknown function (DUF1425) CH48_4131 PF01230 HIT domain CH48_4132 PF08501 Shikimate dehydrogenase substrate binding domain CH48_4133 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_4133 PF12793 Sugar transport-related sRNA regulator N-term CH48_4135 PF04055 Radical SAM superfamily CH48_4135 PF13186 Iron-sulfur cluster-binding domain CH48_4137 PF00664 ABC transporter transmembrane region CH48_4137 PF03412 Peptidase C39 family CH48_4137 PF00005 ABC transporter CH48_4139 PF02378 Phosphotransferase system, EIIC CH48_4139 PF00367 phosphotransferase system, EIIB CH48_4140 PF01026 TatD related DNase CH48_4141 PF09115 DNA polymerase III, delta subunit, C terminal CH48_4142 PF02223 Thymidylate kinase CH48_4143 PF02618 YceG-like family CH48_4145 PF09632 Rac1-binding domain CH48_4145 PF00069 Protein kinase domain CH48_4148 PF02387 IncFII RepA protein family CH48_415 PF00291 Pyridoxal-phosphate dependent enzyme CH48_4150 PF10723 Replication regulatory protein RepB CH48_4152 PF13333 Integrase core domain CH48_4152 PF00665 Integrase core domain CH48_4152 PF13276 HTH-like domain CH48_4154 PF05857 TraX protein CH48_4156 PF01527 Transposase CH48_4157 PF01527 Transposase CH48_416 PF00381 PTS HPr component phosphorylation site CH48_4161 PF08751 TrwC relaxase CH48_4161 PF07057 DNA helicase TraI CH48_4161 PF18272 single-stranded DNA binding TraI N-terminal subdomain CH48_4161 PF18340 DNA relaxase TraI 2B/2B-like domain CH48_4162 PF03358 NADPH-dependent FMN reductase CH48_4163 PF01022 Bacterial regulatory protein, arsR family CH48_4164 PF02040 Arsenical pump membrane protein CH48_4165 PF03960 ArsC family CH48_4166 PF00239 Resolvase, N terminal domain CH48_4166 PF02796 Helix-turn-helix domain of resolvase CH48_4168 PF13700 Domain of unknown function (DUF4158) CH48_4168 PF01526 Tn3 transposase DDE domain CH48_4168 PF01526 Tn3 transposase DDE domain CH48_4168 PF13700 Domain of unknown function (DUF4158) CH48_417 PF05524 PEP-utilising enzyme, N-terminal CH48_417 PF00391 PEP-utilising enzyme, mobile domain CH48_417 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_4170 PF00892 EamA-like transporter family CH48_4171 PF05662 Coiled stalk of trimeric autotransporter adhesin CH48_4171 PF03895 YadA-like membrane anchor domain CH48_4171 PF05658 Head domain of trimeric autotransporter adhesin CH48_4173 PF01526 Tn3 transposase DDE domain CH48_4173 PF13700 Domain of unknown function (DUF4158) CH48_4174 PF09013 YopH, N-terminal CH48_4177 PF01527 Transposase CH48_4178 PF01527 Transposase CH48_418 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH48_4181 PF13614 AAA domain CH48_4182 PF18090 Centromere-binding protein HTH domain CH48_4182 PF02195 ParB-like nuclease domain CH48_4183 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH48_4185 PF03545 Yersinia virulence determinant (YopE) CH48_4185 PF09020 YopE, N terminal CH48_4186 PF05932 Tir chaperone protein (CesT) family CH48_4187 PF00665 Integrase core domain CH48_4189 PF09013 YopH, N-terminal CH48_4189 PF00102 Protein-tyrosine phosphatase CH48_419 PF00512 His Kinase A (phospho-acceptor) domain CH48_419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_419 PF16527 Two-component sensor protein CpxA, periplasmic domain CH48_419 PF00672 HAMP domain CH48_4190 PF09013 YopH, N-terminal CH48_4191 PF02108 Flagellar assembly protein FliH CH48_4192 PF06578 YOP proteins translocation protein K (YscK) CH48_4193 PF01514 Secretory protein of YscJ/FliF family CH48_4194 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH48_4195 PF09025 YopR, type III needle-polymerisation regulator CH48_4196 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH48_4197 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH48_4198 PF08988 Type III secretion system, cytoplasmic E component of needle CH48_4199 PF16693 Inner membrane component of T3SS, periplasmic domain CH48_4199 PF16697 Inner membrane component of T3SS, cytoplasmic domain CH48_42 PF01757 Acyltransferase family CH48_420 PF00486 Transcriptional regulatory protein, C terminal CH48_420 PF00072 Response regulator receiver domain CH48_4201 PF05932 Tir chaperone protein (CesT) family CH48_4202 PF12833 Helix-turn-helix domain CH48_4204 PF01312 FlhB HrpN YscU SpaS Family CH48_4205 PF01311 Bacterial export proteins, family 1 CH48_4206 PF01313 Bacterial export proteins, family 3 CH48_4207 PF00813 FliP family CH48_4208 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH48_4209 PF02120 Flagellar hook-length control protein FliK CH48_421 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH48_4210 PF07321 Type III secretion protein YscO CH48_4211 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_4211 PF18269 T3SS EscN ATPase C-terminal domain CH48_4211 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_4212 PF18269 T3SS EscN ATPase C-terminal domain CH48_4212 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH48_4212 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH48_4213 PF07201 HrpJ-like domain CH48_4214 PF09059 TyeA CH48_4216 PF09474 Type III secretion system YscX (type_III_YscX) CH48_4218 PF00771 FHIPEP family CH48_4219 PF09621 Type III secretion system regulator (LcrR) CH48_422 PF12704 MacB-like periplasmic core domain CH48_422 PF02687 FtsX-like permease family CH48_422 PF00005 ABC transporter CH48_4220 PF07216 LcrG protein CH48_4221 PF04792 V antigen (LcrV) protein CH48_4222 PF07720 Tetratricopeptide repeat CH48_4223 PF04888 Secretion system effector C (SseC) like family CH48_4224 PF05844 YopD protein CH48_4225 PF00872 Transposase, Mutator family CH48_4226 PF12468 Type III secretion system leucine rich repeat protein CH48_4226 PF12468 Type III secretion system leucine rich repeat protein CH48_423 PF00291 Pyridoxal-phosphate dependent enzyme CH48_4231 PF01527 Transposase CH48_4232 PF01527 Transposase CH48_4233 PF05932 Tir chaperone protein (CesT) family CH48_4234 PF03543 Yersinia/Haemophilus virulence surface antigen CH48_4236 PF05818 Enterobacterial TraT complement resistance protein CH48_424 PF00005 ABC transporter CH48_425 PF00528 Binding-protein-dependent transport system inner membrane component CH48_426 PF00528 Binding-protein-dependent transport system inner membrane component CH48_428 PF07690 Major Facilitator Superfamily CH48_429 PF01418 Helix-turn-helix domain, rpiR family CH48_429 PF01380 SIS domain CH48_430 PF04074 YhcH/YjgK/YiaL CH48_431 PF00480 ROK family CH48_432 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH48_433 PF00701 Dihydrodipicolinate synthetase family CH48_435 PF04261 Dyp-type peroxidase family CH48_436 PF06572 Protein of unknown function (DUF1131) CH48_437 PF04076 Bacterial OB fold (BOF) protein CH48_438 PF00583 Acetyltransferase (GNAT) family CH48_439 PF01218 Coproporphyrinogen III oxidase CH48_440 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH48_441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_441 PF03466 LysR substrate binding domain CH48_444 PF01515 Phosphate acetyl/butaryl transferase CH48_444 PF03949 Malic enzyme, NAD binding domain CH48_444 PF00390 Malic enzyme, N-terminal domain CH48_445 PF00293 NUDIX domain CH48_446 PF03264 NapC/NirT cytochrome c family, N-terminal region CH48_447 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH48_448 PF01568 Molydopterin dinucleotide binding domain CH48_448 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH48_448 PF00384 Molybdopterin oxidoreductase CH48_448 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH48_449 PF03927 NapD protein CH48_45 PF02080 TrkA-C domain CH48_45 PF03471 Transporter associated domain CH48_45 PF00999 Sodium/hydrogen exchanger family CH48_451 PF00196 Bacterial regulatory proteins, luxR family CH48_451 PF00072 Response regulator receiver domain CH48_453 PF00873 AcrB/AcrD/AcrF family CH48_457 PF03960 ArsC family CH48_458 PF07687 Peptidase dimerisation domain CH48_458 PF01546 Peptidase family M20/M25/M40 CH48_459 PF02557 D-alanyl-D-alanine carboxypeptidase CH48_460 PF13980 Uncharacterised protein family (UPF0370) CH48_464 PF13505 Outer membrane protein beta-barrel domain CH48_466 PF02371 Transposase IS116/IS110/IS902 family CH48_466 PF01548 Transposase CH48_467 PF03245 Bacteriophage Rz lysis protein CH48_469 PF02230 Phospholipase/Carboxylesterase CH48_47 PF00196 Bacterial regulatory proteins, luxR family CH48_47 PF03472 Autoinducer binding domain CH48_471 PF13718 GNAT acetyltransferase 2 CH48_471 PF05127 Helicase CH48_471 PF17176 tRNA-binding domain CH48_472 PF04284 Protein of unknown function (DUF441) CH48_473 PF04228 Putative neutral zinc metallopeptidase CH48_474 PF01259 SAICAR synthetase CH48_475 PF06804 NlpB/DapX lipoprotein CH48_476 PF00701 Dihydrodipicolinate synthetase family CH48_477 PF01842 ACT domain CH48_478 PF00578 AhpC/TSA family CH48_479 PF01594 AI-2E family transporter CH48_48 PF00765 Autoinducer synthase CH48_480 PF07720 Tetratricopeptide repeat CH48_480 PF01435 Peptidase family M48 CH48_481 PF03960 ArsC family CH48_482 PF00308 Bacterial dnaA protein CH48_483 PF00860 Permease family CH48_485 PF00586 AIR synthase related protein, N-terminal domain CH48_485 PF02769 AIR synthase related protein, C-terminal domain CH48_486 PF00551 Formyl transferase CH48_487 PF13302 Acetyltransferase (GNAT) domain CH48_490 PF00005 ABC transporter CH48_491 PF00528 Binding-protein-dependent transport system inner membrane component CH48_492 PF00528 Binding-protein-dependent transport system inner membrane component CH48_493 PF17941 Polyphosphate kinase C-terminal domain 1 CH48_493 PF02503 Polyphosphate kinase middle domain CH48_493 PF13089 Polyphosphate kinase N-terminal domain CH48_493 PF13090 Polyphosphate kinase C-terminal domain 2 CH48_494 PF02541 Ppx/GppA phosphatase family CH48_496 PF03448 MgtE intracellular N domain CH48_496 PF01769 Divalent cation transporter CH48_496 PF00571 CBS domain CH48_497 PF08448 PAS fold CH48_497 PF13426 PAS domain CH48_497 PF05231 MASE1 CH48_497 PF00563 EAL domain CH48_497 PF00990 Diguanylate cyclase, GGDEF domain CH48_497 PF08447 PAS fold CH48_498 PF00012 Hsp70 protein CH48_5 PF00698 Acyl transferase domain CH48_50 PF03918 Cytochrome C biogenesis protein CH48_500 PF13533 Biotin-lipoyl like CH48_501 PF00873 AcrB/AcrD/AcrF family CH48_502 PF00873 AcrB/AcrD/AcrF family CH48_504 PF07690 Major Facilitator Superfamily CH48_505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_505 PF00512 His Kinase A (phospho-acceptor) domain CH48_505 PF00672 HAMP domain CH48_506 PF00486 Transcriptional regulatory protein, C terminal CH48_506 PF00072 Response regulator receiver domain CH48_507 PF07411 Domain of unknown function (DUF1508) CH48_509 PF00781 Diacylglycerol kinase catalytic domain CH48_51 PF08534 Redoxin CH48_510 PF03608 PTS system enzyme II sorbitol-specific factor CH48_511 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH48_511 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH48_512 PF03829 PTS system glucitol/sorbitol-specific IIA component CH48_513 PF00106 short chain dehydrogenase CH48_514 PF06923 Glucitol operon activator protein (GutM) CH48_515 PF00455 DeoR C terminal sensor domain CH48_515 PF08220 DeoR-like helix-turn-helix domain CH48_516 PF00571 CBS domain CH48_516 PF01380 SIS domain CH48_52 PF01578 Cytochrome C assembly protein CH48_52 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH48_520 PF08543 Phosphomethylpyrimidine kinase CH48_523 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH48_523 PF00034 Cytochrome c CH48_524 PF05199 GMC oxidoreductase CH48_524 PF00732 GMC oxidoreductase CH48_527 PF02540 NAD synthase CH48_527 PF00958 GMP synthase C terminal domain CH48_527 PF00117 Glutamine amidotransferase class-I CH48_528 PF00571 CBS domain CH48_528 PF00478 IMP dehydrogenase / GMP reductase domain CH48_529 PF13742 OB-fold nucleic acid binding domain CH48_529 PF02601 Exonuclease VII, large subunit CH48_53 PF03916 Polysulphide reductase, NrfD CH48_530 PF07191 zinc-ribbons CH48_533 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH48_533 PF01926 50S ribosome-binding GTPase CH48_534 PF13360 PQQ-like domain CH48_535 PF09976 Tetratricopeptide repeat-like domain CH48_536 PF13393 Histidyl-tRNA synthetase CH48_536 PF03129 Anticodon binding domain CH48_537 PF04551 GcpE protein CH48_538 PF13464 Domain of unknown function (DUF4115) CH48_54 PF00037 4Fe-4S binding domain CH48_54 PF13247 4Fe-4S dicluster domain CH48_540 PF04055 Radical SAM superfamily CH48_541 PF00334 Nucleoside diphosphate kinase CH48_543 PF00905 Penicillin binding protein transpeptidase domain CH48_543 PF00912 Transglycosylase CH48_543 PF06832 Penicillin-Binding Protein C-terminus Family CH48_544 PF07703 Alpha-2-macroglobulin bait region domain CH48_544 PF07678 A-macroglobulin TED domain CH48_544 PF01835 MG2 domain CH48_544 PF17962 Bacterial macroglobulin domain 6 CH48_544 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH48_544 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH48_544 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH48_544 PF00207 Alpha-2-macroglobulin family CH48_544 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH48_546 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH48_546 PF03797 Autotransporter beta-domain CH48_546 PF03212 Pertactin CH48_547 PF07179 SseB protein N-terminal domain CH48_547 PF14581 SseB protein C-terminal domain CH48_548 PF12404 Peptidase CH48_548 PF00883 Cytosol aminopeptidase family, catalytic domain CH48_549 PF04384 Iron-sulphur cluster assembly CH48_55 PF13435 Cytochrome c554 and c-prime CH48_55 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CH48_550 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_551 PF00012 Hsp70 protein CH48_552 PF07743 HSCB C-terminal oligomerisation domain CH48_552 PF00226 DnaJ domain CH48_553 PF01521 Iron-sulphur cluster biosynthesis CH48_554 PF01592 NifU-like N terminal domain CH48_555 PF00266 Aminotransferase class-V CH48_556 PF02082 Transcriptional regulator CH48_557 PF00588 SpoU rRNA Methylase family CH48_558 PF00459 Inositol monophosphatase family CH48_559 PF03824 High-affinity nickel-transport protein CH48_56 PF02335 Cytochrome c552 CH48_560 PF06226 Protein of unknown function (DUF1007) CH48_561 PF12832 MFS_1 like family CH48_562 PF00874 PRD domain CH48_563 PF00464 Serine hydroxymethyltransferase CH48_564 PF00175 Oxidoreductase NAD-binding domain CH48_564 PF00970 Oxidoreductase FAD-binding domain CH48_564 PF00042 Globin CH48_568 PF01168 Alanine racemase, N-terminal domain CH48_569 PF02126 Phosphotriesterase family CH48_570 PF10941 Protein of unknown function DUF2620 CH48_571 PF10797 Protein of unknown function CH48_572 PF00543 Nitrogen regulatory protein P-II CH48_573 PF02540 NAD synthase CH48_573 PF00795 Carbon-nitrogen hydrolase CH48_574 PF00072 Response regulator receiver domain CH48_574 PF00158 Sigma-54 interaction domain CH48_575 PF13942 YfhG lipoprotein CH48_576 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_576 PF00512 His Kinase A (phospho-acceptor) domain CH48_578 PF02769 AIR synthase related protein, C-terminal domain CH48_578 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH48_578 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH48_579 PF01464 Transglycosylase SLT domain CH48_579 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH48_58 PF04358 DsrC like protein CH48_580 PF14437 MafB19-like deaminase CH48_583 PF01380 SIS domain CH48_584 PF01418 Helix-turn-helix domain, rpiR family CH48_584 PF01380 SIS domain CH48_585 PF12838 4Fe-4S dicluster domain CH48_586 PF02447 GntP family permease CH48_587 PF01648 4'-phosphopantetheinyl transferase superfamily CH48_588 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH48_589 PF02565 Recombination protein O C terminal CH48_589 PF11967 Recombination protein O N terminal CH48_59 PF00708 Acylphosphatase CH48_590 PF07650 KH domain CH48_590 PF01926 50S ribosome-binding GTPase CH48_591 PF00035 Double-stranded RNA binding motif CH48_591 PF14622 Ribonuclease-III-like CH48_592 PF10502 Signal peptidase, peptidase S26 CH48_593 PF00009 Elongation factor Tu GTP binding domain CH48_593 PF03144 Elongation factor Tu domain 2 CH48_593 PF06421 GTP-binding protein LepA C-terminus CH48_593 PF00679 Elongation factor G C-terminus CH48_596 PF03888 MucB/RseB N-terminal domain CH48_596 PF17188 MucB/RseB C-terminal domain CH48_597 PF03873 Anti sigma-E protein RseA, C-terminal domain CH48_597 PF03872 Anti sigma-E protein RseA, N-terminal domain CH48_598 PF08281 Sigma-70, region 4 CH48_598 PF04542 Sigma-70 region 2 CH48_599 PF02910 Fumarate reductase flavoprotein C-term CH48_599 PF00890 FAD binding domain CH48_6 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH48_6 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH48_600 PF05175 Methyltransferase small domain CH48_601 PF00271 Helicase conserved C-terminal domain CH48_601 PF00270 DEAD/DEAH box helicase CH48_602 PF01548 Transposase CH48_602 PF02371 Transposase IS116/IS110/IS902 family CH48_604 PF12796 Ankyrin repeats (3 copies) CH48_607 PF01228 Glycine radical CH48_608 PF03167 Uracil DNA glycosylase superfamily CH48_609 PF01025 GrpE CH48_610 PF01513 ATP-NAD kinase CH48_611 PF02463 RecF/RecN/SMC N terminal domain CH48_612 PF04355 SmpA / OmlA family CH48_613 PF03658 RnfH family Ubiquitin CH48_615 PF03364 Polyketide cyclase / dehydrase and lipid transport CH48_616 PF01668 SmpB protein CH48_617 PF00589 Phage integrase family CH48_617 PF13356 Arm DNA-binding domain CH48_62 PF10672 S-adenosylmethionine-dependent methyltransferase CH48_62 PF17785 PUA-like domain CH48_621 PF00145 C-5 cytosine-specific DNA methylase CH48_622 PF04917 Bacterial shufflon protein, N-terminal constant region CH48_626 PF01443 Viral (Superfamily 1) RNA helicase CH48_626 PF17841 BID domain of Bartonella effector protein (Bep) CH48_626 PF03389 MobA/MobL family CH48_627 PF01695 IstB-like ATP binding protein CH48_628 PF00665 Integrase core domain CH48_63 PF08755 Hemimethylated DNA-binding protein YccV like CH48_630 PF04794 YdjC-like protein CH48_631 PF07883 Cupin domain CH48_631 PF12833 Helix-turn-helix domain CH48_632 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH48_633 PF00232 Glycosyl hydrolase family 1 CH48_634 PF02378 Phosphotransferase system, EIIC CH48_635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH48_636 PF07995 Glucose / Sorbosone dehydrogenase CH48_638 PF00248 Aldo/keto reductase family CH48_64 PF13380 CoA binding domain CH48_640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_641 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH48_642 PF02254 TrkA-N domain CH48_642 PF07885 Ion channel CH48_643 PF06411 HdeA/HdeB family CH48_644 PF03824 High-affinity nickel-transport protein CH48_645 PF03253 Urea transporter CH48_646 PF01774 UreD urease accessory protein CH48_647 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH48_648 PF01730 UreF CH48_649 PF05194 UreE urease accessory protein, C-terminal domain CH48_649 PF02814 UreE urease accessory protein, N-terminal domain CH48_65 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH48_650 PF00449 Urease alpha-subunit, N-terminal domain CH48_650 PF01979 Amidohydrolase family CH48_651 PF00699 Urease beta subunit CH48_652 PF00547 Urease, gamma subunit CH48_653 PF00005 ABC transporter CH48_654 PF00005 ABC transporter CH48_655 PF12911 N-terminal TM domain of oligopeptide transport permease C CH48_655 PF00528 Binding-protein-dependent transport system inner membrane component CH48_656 PF00528 Binding-protein-dependent transport system inner membrane component CH48_657 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_66 PF02142 MGS-like domain CH48_662 PF00313 'Cold-shock' DNA-binding domain CH48_665 PF09400 Protein of unknown function (DUF2002) CH48_666 PF07690 Major Facilitator Superfamily CH48_667 PF12833 Helix-turn-helix domain CH48_67 PF12462 DNA helicase IV / RNA helicase N terminal CH48_67 PF13361 UvrD-like helicase C-terminal domain CH48_67 PF00580 UvrD/REP helicase N-terminal domain CH48_670 PF06392 Acid shock protein repeat CH48_671 PF05957 Bacterial protein of unknown function (DUF883) CH48_672 PF00155 Aminotransferase class I and II CH48_672 PF00392 Bacterial regulatory proteins, gntR family CH48_673 PF02627 Carboxymuconolactone decarboxylase family CH48_675 PF07972 NrdI Flavodoxin like CH48_676 PF08343 Ribonucleotide reductase N-terminal CH48_676 PF00317 Ribonucleotide reductase, all-alpha domain CH48_676 PF02867 Ribonucleotide reductase, barrel domain CH48_677 PF00268 Ribonucleotide reductase, small chain CH48_678 PF00005 ABC transporter CH48_678 PF00571 CBS domain CH48_679 PF00528 Binding-protein-dependent transport system inner membrane component CH48_68 PF03733 Inner membrane component domain CH48_680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH48_682 PF00929 Exonuclease CH48_683 PF00075 RNase H CH48_684 PF08241 Methyltransferase domain CH48_685 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH48_685 PF00753 Metallo-beta-lactamase superfamily CH48_686 PF01476 LysM domain CH48_686 PF01464 Transglycosylase SLT domain CH48_687 PF01548 Transposase CH48_687 PF02371 Transposase IS116/IS110/IS902 family CH48_688 PF01548 Transposase CH48_688 PF02371 Transposase IS116/IS110/IS902 family CH48_689 PF03372 Endonuclease/Exonuclease/phosphatase family CH48_69 PF12805 FUSC-like inner membrane protein yccS CH48_690 PF07690 Major Facilitator Superfamily CH48_691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_691 PF03466 LysR substrate binding domain CH48_692 PF00248 Aldo/keto reductase family CH48_693 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_693 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_694 PF00872 Transposase, Mutator family CH48_7 PF02504 Fatty acid synthesis protein CH48_70 PF04993 TfoX N-terminal domain CH48_70 PF04994 TfoX C-terminal domain CH48_703 PF09383 NIL domain CH48_703 PF00005 ABC transporter CH48_704 PF00528 Binding-protein-dependent transport system inner membrane component CH48_705 PF03180 NLPA lipoprotein CH48_706 PF16358 RcsF lipoprotein CH48_707 PF01980 tRNA-methyltransferase O CH48_707 PF18389 TrmO C-terminal domain CH48_708 PF04073 Aminoacyl-tRNA editing domain CH48_708 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH48_708 PF03129 Anticodon binding domain CH48_709 PF04170 NlpE N-terminal domain CH48_709 PF17185 NlpE C-terminal OB domain CH48_71 PF03846 Cell division inhibitor SulA CH48_710 PF00472 RF-1 domain CH48_711 PF07152 YaeQ protein CH48_712 PF06786 Uncharacterised protein family (UPF0253) CH48_713 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH48_714 PF00034 Cytochrome c CH48_715 PF01171 PP-loop family CH48_715 PF09179 TilS substrate binding domain CH48_715 PF11734 TilS substrate C-terminal domain CH48_716 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH48_718 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH48_719 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH48_719 PF14579 Helix-hairpin-helix motif CH48_719 PF02811 PHP domain CH48_719 PF01336 OB-fold nucleic acid binding domain CH48_719 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH48_72 PF00691 OmpA family CH48_72 PF01389 OmpA-like transmembrane domain CH48_720 PF01351 Ribonuclease HII CH48_721 PF02684 Lipid-A-disaccharide synthetase CH48_722 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH48_722 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_723 PF07977 FabA-like domain CH48_724 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_724 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH48_725 PF03938 Outer membrane protein (OmpH-like) CH48_726 PF07244 Surface antigen variable number repeat CH48_726 PF01103 Surface antigen CH48_727 PF02163 Peptidase family M50 CH48_727 PF17820 PDZ domain CH48_729 PF01255 Putative undecaprenyl diphosphate synthase CH48_73 PF17414 MatP C-terminal ribbon-helix-helix domain CH48_73 PF06303 MatP N-terminal domain CH48_730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH48_730 PF13288 DXP reductoisomerase C-terminal domain CH48_730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH48_731 PF01765 Ribosome recycling factor CH48_732 PF00696 Amino acid kinase family CH48_733 PF00889 Elongation factor TS CH48_734 PF00318 Ribosomal protein S2 CH48_735 PF00557 Metallopeptidase family M24 CH48_736 PF01842 ACT domain CH48_736 PF01909 Nucleotidyltransferase domain CH48_736 PF08335 GlnD PII-uridylyltransferase CH48_736 PF01966 HD domain CH48_737 PF14602 Hexapeptide repeat of succinyl-transferase CH48_737 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH48_737 PF00132 Bacterial transferase hexapeptide (six repeats) CH48_738 PF11944 Protein of unknown function (DUF3461) CH48_739 PF00258 Flavodoxin CH48_74 PF13654 AAA domain CH48_74 PF05362 Lon protease (S16) C-terminal proteolytic domain CH48_740 PF00849 RNA pseudouridylate synthase CH48_741 PF04287 tRNA pseudouridine synthase C CH48_742 PF07348 Syd protein (SUKH-2) CH48_743 PF14489 QueF-like protein CH48_743 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH48_744 PF11892 Domain of unknown function (DUF3412) CH48_744 PF03641 Possible lysine decarboxylase CH48_744 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH48_745 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH48_745 PF01367 5'-3' exonuclease, C-terminal SAM fold CH48_748 PF18125 RlmM ferredoxin-like domain CH48_748 PF01728 FtsJ-like methyltransferase CH48_749 PF04241 Protein of unknown function (DUF423) CH48_75 PF07977 FabA-like domain CH48_750 PF03466 LysR substrate binding domain CH48_750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_751 PF06004 Bacterial protein of unknown function (DUF903) CH48_752 PF00266 Aminotransferase class-V CH48_753 PF02657 Fe-S metabolism associated domain CH48_754 PF00899 ThiF family CH48_755 PF03562 MltA specific insert domain CH48_755 PF06725 3D domain CH48_759 PF11741 AMIN domain CH48_759 PF01520 N-acetylmuramoyl-L-alanine amidase CH48_760 PF00583 Acetyltransferase (GNAT) family CH48_760 PF00696 Amino acid kinase family CH48_763 PF13538 UvrD-like helicase C-terminal domain CH48_764 PF00580 UvrD/REP helicase N-terminal domain CH48_764 PF13361 UvrD-like helicase C-terminal domain CH48_764 PF12705 PD-(D/E)XK nuclease superfamily CH48_765 PF05193 Peptidase M16 inactive domain CH48_765 PF16187 Middle or third domain of peptidase_M16 CH48_765 PF00675 Insulinase (Peptidase family M16) CH48_766 PF17946 RecC C-terminal domain CH48_770 PF00303 Thymidylate synthase CH48_771 PF01790 Prolipoprotein diacylglyceryl transferase CH48_772 PF02896 PEP-utilising enzyme, TIM barrel domain CH48_772 PF01590 GAF domain CH48_772 PF00391 PEP-utilising enzyme, mobile domain CH48_772 PF05524 PEP-utilising enzyme, N-terminal CH48_773 PF00293 NUDIX domain CH48_774 PF02976 DNA mismatch repair enzyme MutH CH48_775 PF03741 Integral membrane protein TerC family CH48_776 PF00248 Aldo/keto reductase family CH48_777 PF07690 Major Facilitator Superfamily CH48_778 PF13193 AMP-binding enzyme C-terminal domain CH48_778 PF00501 AMP-binding enzyme CH48_778 PF01553 Acyltransferase CH48_78 PF02801 Beta-ketoacyl synthase, C-terminal domain CH48_78 PF00109 Beta-ketoacyl synthase, N-terminal domain CH48_780 PF01568 Molydopterin dinucleotide binding domain CH48_780 PF00384 Molybdopterin oxidoreductase CH48_781 PF00356 Bacterial regulatory proteins, lacI family CH48_782 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH48_782 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH48_783 PF07690 Major Facilitator Superfamily CH48_784 PF03466 LysR substrate binding domain CH48_784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_785 PF03466 LysR substrate binding domain CH48_785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_787 PF00672 HAMP domain CH48_787 PF02203 Tar ligand binding domain homologue CH48_787 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH48_79 PF04957 Ribosome modulation factor CH48_792 PF01478 Type IV leader peptidase family CH48_792 PF06750 Bacterial Peptidase A24 N-terminal domain CH48_8 PF01783 Ribosomal L32p protein family CH48_80 PF03886 ABC-type transport auxiliary lipoprotein component CH48_800 PF07963 Prokaryotic N-terminal methylation motif CH48_800 PF08334 Type II secretion system (T2SS), protein G CH48_801 PF00482 Type II secretion system (T2SS), protein F CH48_803 PF00263 Bacterial type II and III secretion system protein CH48_803 PF03958 Bacterial type II/III secretion system short domain CH48_806 PF00484 Carbonic anhydrase CH48_807 PF01638 HxlR-like helix-turn-helix CH48_81 PF02470 MlaD protein CH48_810 PF00226 DnaJ domain CH48_810 PF01556 DnaJ C terminal domain CH48_812 PF08448 PAS fold CH48_812 PF00990 Diguanylate cyclase, GGDEF domain CH48_813 PF13474 SnoaL-like domain CH48_816 PF00872 Transposase, Mutator family CH48_817 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CH48_818 PF15723 Motility quorum-sensing regulator, toxin of MqsA CH48_82 PF04403 Paraquat-inducible protein A CH48_821 PF01381 Helix-turn-helix CH48_824 PF02796 Helix-turn-helix domain of resolvase CH48_824 PF00239 Resolvase, N terminal domain CH48_827 PF00665 Integrase core domain CH48_829 PF01695 IstB-like ATP binding protein CH48_83 PF12848 ABC transporter CH48_83 PF00005 ABC transporter CH48_83 PF16326 ABC transporter C-terminal domain CH48_831 PF01336 OB-fold nucleic acid binding domain CH48_831 PF00152 tRNA synthetases class II (D, K and N) CH48_832 PF00472 RF-1 domain CH48_832 PF03462 PCRF domain CH48_833 PF02272 DHHA1 domain CH48_833 PF01368 DHH family CH48_833 PF17768 RecJ OB domain CH48_834 PF10411 Disulfide bond isomerase protein N-terminus CH48_834 PF13098 Thioredoxin-like domain CH48_835 PF00589 Phage integrase family CH48_835 PF02899 Phage integrase, N-terminal SAM-like domain CH48_836 PF00258 Flavodoxin CH48_837 PF06123 Inner membrane protein CreD CH48_838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_838 PF00512 His Kinase A (phospho-acceptor) domain CH48_838 PF00672 HAMP domain CH48_839 PF00486 Transcriptional regulatory protein, C terminal CH48_839 PF00072 Response regulator receiver domain CH48_84 PF01170 Putative RNA methylase family UPF0020 CH48_84 PF02926 THUMP domain CH48_84 PF10672 S-adenosylmethionine-dependent methyltransferase CH48_840 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH48_841 PF03937 Flavinator of succinate dehydrogenase CH48_842 PF01571 Aminomethyltransferase folate-binding domain CH48_844 PF03006 Haemolysin-III related CH48_849 PF02347 Glycine cleavage system P-protein CH48_85 PF00111 2Fe-2S iron-sulfur cluster binding domain CH48_85 PF03476 MOSC N-terminal beta barrel domain CH48_85 PF03473 MOSC domain CH48_850 PF01597 Glycine cleavage H-protein CH48_851 PF01571 Aminomethyltransferase folate-binding domain CH48_851 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH48_852 PF01494 FAD binding domain CH48_853 PF01494 FAD binding domain CH48_854 PF00557 Metallopeptidase family M24 CH48_854 PF05195 Aminopeptidase P, N-terminal domain CH48_855 PF03695 Uncharacterised protein family (UPF0149) CH48_856 PF05164 Cell division protein ZapA CH48_857 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH48_858 PF00113 Enolase, C-terminal TIM barrel domain CH48_858 PF03952 Enolase, N-terminal domain CH48_859 PF06418 CTP synthase N-terminus CH48_859 PF00117 Glutamine amidotransferase class-I CH48_86 PF07126 Cell-division protein ZapC CH48_861 PF03819 MazG nucleotide pyrophosphohydrolase domain CH48_862 PF02824 TGS domain CH48_862 PF04607 Region found in RelA / SpoT proteins CH48_862 PF13291 ACT domain CH48_863 PF05958 tRNA (Uracil-5-)-methyltransferase CH48_863 PF01938 TRAM domain CH48_864 PF00512 His Kinase A (phospho-acceptor) domain CH48_864 PF01627 Hpt domain CH48_864 PF00072 Response regulator receiver domain CH48_864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH48_864 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH48_864 PF00672 HAMP domain CH48_865 PF00595 PDZ domain CH48_866 PF13286 Phosphohydrolase-associated domain CH48_866 PF01966 HD domain CH48_867 PF01048 Phosphorylase superfamily CH48_868 PF01497 Periplasmic binding protein CH48_869 PF03458 UPF0126 domain CH48_87 PF01180 Dihydroorotate dehydrogenase CH48_870 PF01521 Iron-sulphur cluster biosynthesis CH48_871 PF00654 Voltage gated chloride channel CH48_872 PF00202 Aminotransferase class-III CH48_873 PF07690 Major Facilitator Superfamily CH48_874 PF01032 FecCD transport family CH48_876 PF01497 Periplasmic binding protein CH48_877 PF00005 ABC transporter CH48_878 PF00912 Transglycosylase CH48_878 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH48_878 PF14814 Bifunctional transglycosylase second domain CH48_878 PF00905 Penicillin binding protein transpeptidase domain CH48_879 PF08482 ATP-dependent helicase C-terminal CH48_879 PF00271 Helicase conserved C-terminal domain CH48_879 PF04408 Helicase associated domain (HA2) CH48_879 PF00270 DEAD/DEAH box helicase CH48_88 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH48_88 PF01433 Peptidase family M1 domain CH48_88 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH48_880 PF02834 LigT like Phosphoesterase CH48_881 PF03749 Sugar fermentation stimulation protein RE domain CH48_881 PF17746 SfsA N-terminal OB domain CH48_882 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH48_883 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH48_884 PF01743 Poly A polymerase head domain CH48_884 PF12627 Probable RNA and SrmB- binding site of polymerase A CH48_884 PF12626 Polymerase A arginine-rich C-terminus CH48_885 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH48_886 PF02548 Ketopantoate hydroxymethyltransferase CH48_887 PF02569 Pantoate-beta-alanine ligase CH48_888 PF02261 Aspartate decarboxylase CH48_889 PF01522 Polysaccharide deacetylase CH48_89 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH48_89 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH48_890 PF01061 ABC-2 type transporter CH48_891 PF00005 ABC transporter CH48_893 PF00484 Carbonic anhydrase CH48_894 PF00156 Phosphoribosyl transferase domain CH48_895 PF07731 Multicopper oxidase CH48_895 PF00394 Multicopper oxidase CH48_895 PF07732 Multicopper oxidase CH48_895 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH48_896 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH48_897 PF17284 Spermidine synthase tetramerisation domain CH48_898 PF02675 S-adenosylmethionine decarboxylase CH48_899 PF18624 CDI immunity protein CH48_9 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH48_90 PF01336 OB-fold nucleic acid binding domain CH48_90 PF00152 tRNA synthetases class II (D, K and N) CH48_900 PF00892 EamA-like transporter family CH48_901 PF06062 Uncharacterised protein family (UPF0231) CH48_902 PF00330 Aconitase family (aconitate hydratase) CH48_902 PF06434 Aconitate hydratase 2 N-terminus CH48_902 PF11791 Aconitate B N-terminal domain CH48_903 PF07715 TonB-dependent Receptor Plug Domain CH48_903 PF00593 TonB dependent receptor CH48_904 PF01965 DJ-1/PfpI family CH48_904 PF12833 Helix-turn-helix domain CH48_906 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH48_906 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH48_907 PF00364 Biotin-requiring enzyme CH48_907 PF02817 e3 binding domain CH48_907 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH48_908 PF17831 Pyruvate dehydrogenase E1 component middle domain CH48_908 PF00456 Transketolase, thiamine diphosphate binding domain CH48_909 PF07729 FCD domain CH48_909 PF00392 Bacterial regulatory proteins, gntR family CH48_91 PF00267 Gram-negative porin CH48_910 PF00324 Amino acid permease CH48_911 PF17113 Regulatory signalling modulator protein AmpE CH48_912 PF01510 N-acetylmuramoyl-L-alanine amidase CH48_913 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH48_913 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH48_914 PF07963 Prokaryotic N-terminal methylation motif CH48_915 PF00437 Type II/IV secretion system protein CH48_915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH48_916 PF00482 Type II secretion system (T2SS), protein F CH48_917 PF00478 IMP dehydrogenase / GMP reductase domain CH48_918 PF01121 Dephospho-CoA kinase CH48_919 PF07072 Cell division protein CH48_92 PF00155 Aminotransferase class I and II CH48_920 PF03884 DNA gyrase inhibitor YacG CH48_921 PF00293 NUDIX domain CH48_922 PF02810 SEC-C motif CH48_922 PF01043 SecA preprotein cross-linking domain CH48_922 PF07516 SecA Wing and Scaffold domain CH48_922 PF07517 SecA DEAD-like domain CH48_923 PF06558 Secretion monitor precursor protein (SecM) CH48_925 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH48_926 PF12327 FtsZ family, C-terminal domain CH48_926 PF00091 Tubulin/FtsZ family, GTPase domain CH48_927 PF02491 SHS2 domain inserted in FTSA CH48_928 PF03799 Cell division protein FtsQ CH48_928 PF08478 POTRA domain, FtsQ-type CH48_929 PF01820 D-ala D-ala ligase N-terminus CH48_929 PF07478 D-ala D-ala ligase C-terminus CH48_93 PF00563 EAL domain CH48_93 PF12792 CSS motif domain associated with EAL CH48_930 PF02875 Mur ligase family, glutamate ligase domain CH48_930 PF01225 Mur ligase family, catalytic domain CH48_930 PF08245 Mur ligase middle domain CH48_931 PF03033 Glycosyltransferase family 28 N-terminal domain CH48_931 PF04101 Glycosyltransferase family 28 C-terminal domain CH48_932 PF01098 Cell cycle protein CH48_933 PF02875 Mur ligase family, glutamate ligase domain CH48_933 PF08245 Mur ligase middle domain CH48_934 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH48_934 PF00953 Glycosyl transferase family 4 CH48_935 PF01225 Mur ligase family, catalytic domain CH48_935 PF08245 Mur ligase middle domain CH48_935 PF02875 Mur ligase family, glutamate ligase domain CH48_936 PF08245 Mur ligase middle domain CH48_936 PF02875 Mur ligase family, glutamate ligase domain CH48_936 PF01225 Mur ligase family, catalytic domain CH48_937 PF03717 Penicillin-binding Protein dimerisation domain CH48_937 PF00905 Penicillin binding protein transpeptidase domain CH48_938 PF04999 Cell division protein FtsL CH48_939 PF01795 MraW methylase family CH48_94 PF00753 Metallo-beta-lactamase superfamily CH48_940 PF02381 MraZ protein, putative antitoxin-like CH48_941 PF06610 L-alanine exporter CH48_942 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH48_942 PF00356 Bacterial regulatory proteins, lacI family CH48_943 PF10369 Small subunit of acetolactate synthase CH48_944 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH48_944 PF00205 Thiamine pyrophosphate enzyme, central domain CH48_944 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH48_945 PF00501 AMP-binding enzyme CH48_946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_946 PF03466 LysR substrate binding domain CH48_948 PF00682 HMGL-like CH48_948 PF08502 LeuA allosteric (dimerisation) domain CH48_949 PF00180 Isocitrate/isopropylmalate dehydrogenase CH48_95 PF05951 Bacterial protein of unknown function (DUF882) CH48_950 PF00330 Aconitase family (aconitate hydratase) CH48_951 PF00694 Aconitase C-terminal domain CH48_953 PF01212 Beta-eliminating lyase CH48_954 PF03222 Tryptophan/tyrosine permease family CH48_956 PF07690 Major Facilitator Superfamily CH48_958 PF04055 Radical SAM superfamily CH48_959 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH48_959 PF12793 Sugar transport-related sRNA regulator N-term CH48_96 PF03734 L,D-transpeptidase catalytic domain CH48_96 PF01471 Putative peptidoglycan binding domain CH48_963 PF00528 Binding-protein-dependent transport system inner membrane component CH48_964 PF09335 SNARE associated Golgi protein CH48_965 PF00005 ABC transporter CH48_966 PF03104 DNA polymerase family B, exonuclease domain CH48_966 PF00136 DNA polymerase family B CH48_967 PF18339 RapA N-terminal Tudor like domain 1 CH48_967 PF00271 Helicase conserved C-terminal domain CH48_967 PF18337 RapA N-terminal Tudor like domain CH48_967 PF12137 RNA polymerase recycling family C-terminal CH48_967 PF00176 SNF2 family N-terminal domain CH48_968 PF02369 Bacterial Ig-like domain (group 1) CH48_968 PF11924 Inverse autotransporter, beta-domain CH48_968 PF09134 Invasin, domain 3 CH48_969 PF00849 RNA pseudouridylate synthase CH48_97 PF04310 MukB N-terminal CH48_97 PF16330 MukB hinge domain CH48_970 PF05099 Tellurite resistance protein TerB CH48_970 PF00226 DnaJ domain CH48_971 PF03968 OstA-like protein CH48_971 PF04453 LPS transport system D CH48_972 PF00639 PPIC-type PPIASE domain CH48_972 PF09312 SurA N-terminal domain CH48_973 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH48_974 PF00398 Ribosomal RNA adenine dimethylase CH48_975 PF04379 ApaG domain CH48_976 PF00149 Calcineurin-like phosphoesterase CH48_977 PF00186 Dihydrofolate reductase CH48_978 PF12821 Threonine/Serine exporter, ThrE CH48_979 PF06738 Putative threonine/serine exporter CH48_98 PF04288 MukE-like family CH48_980 PF01810 LysE type translocator CH48_981 PF02142 MGS-like domain CH48_981 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH48_981 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH48_982 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH48_982 PF00117 Glutamine amidotransferase class-I CH48_983 PF05173 Dihydrodipicolinate reductase, C-terminus CH48_983 PF01113 Dihydrodipicolinate reductase, N-terminus CH48_984 PF02401 LytB protein CH48_985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH48_986 PF01252 Signal peptidase (SPase) II CH48_987 PF00133 tRNA synthetases class I (I, L, M and V) CH48_987 PF08264 Anticodon-binding domain of tRNA CH48_987 PF06827 Zinc finger found in FPG and IleRS CH48_988 PF01687 Riboflavin kinase CH48_988 PF06574 FAD synthetase CH48_989 PF01649 Ribosomal protein S20 CH48_99 PF17193 MukF C-terminal domain CH48_99 PF03882 MukF winged-helix domain CH48_99 PF17192 MukF middle domain CH48_990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH48_990 PF03466 LysR substrate binding domain CH48_991 PF06965 Na+/H+ antiporter 1 CH48_992 PF00684 DnaJ central domain CH48_992 PF01556 DnaJ C terminal domain CH48_992 PF00226 DnaJ domain CH48_993 PF00012 Hsp70 protein CH48_994 PF01184 GPR1/FUN34/yaaH family CH48_997 PF07690 Major Facilitator Superfamily CH48_998 PF00994 Probable molybdopterin binding domain CH48_999 PF00923 Transaldolase/Fructose-6-phosphate aldolase