CH48_1005 SM00448 cheY-homologous receiver domain CH48_1005 SM00862 Transcriptional regulatory protein, C terminal CH48_1007 SM00855 Phosphoglycerate mutase family CH48_1008 SM00342 helix_turn_helix, arabinose operon control protein CH48_1008 SM00871 Bacterial transcription activator, effector binding domain CH48_1012 SM00831 Cation transporter/ATPase, N-terminus CH48_1014 SM00267 diguanylate cyclase CH48_1016 SM00382 ATPases associated with a variety of cellular activities CH48_1019 SM00530 Helix-turn-helix XRE-family like proteins CH48_1020 SM00829 Enoylreductase CH48_1021 SM00382 ATPases associated with a variety of cellular activities CH48_1026 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH48_1027 SM01133 CH48_1027 CH48_1032 SM00749 bacterial OsmY and nodulation domain CH48_1042 SM00267 diguanylate cyclase CH48_1048 SM00640 Glycosyl hydrolases family 32 CH48_1049 SM00354 helix_turn _helix lactose operon repressor CH48_105 SM00357 Cold shock protein domain CH48_1050 SM00091 PAS domain CH48_1059 SM01120 CH48_1059 CH48_106 SM00357 Cold shock protein domain CH48_107 SM01150 CH48_107 CH48_1070 SM00382 ATPases associated with a variety of cellular activities CH48_1074 SM01133 CH48_1074 CH48_1084 SM00421 helix_turn_helix, Lux Regulon CH48_1088 SM00382 ATPases associated with a variety of cellular activities CH48_109 SM00382 ATPases associated with a variety of cellular activities CH48_1091 SM00530 Helix-turn-helix XRE-family like proteins CH48_11 SM00363 S4 RNA-binding domain CH48_110 SM00849 Metallo-beta-lactamase superfamily CH48_1109 SM00382 ATPases associated with a variety of cellular activities CH48_111 SM00411 bacterial (prokaryotic) histone like domain CH48_1110 SM00382 ATPases associated with a variety of cellular activities CH48_1115 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_1115 SM00866 CH48_1115 CH48_1120 SM00382 ATPases associated with a variety of cellular activities CH48_1121 SM00382 ATPases associated with a variety of cellular activities CH48_1123 SM00072 Guanylate kinase homologues. CH48_1124 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_113 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1130 SM00382 ATPases associated with a variety of cellular activities CH48_1148 SM00487 DEAD-like helicases superfamily CH48_1148 SM00490 helicase superfamily c-terminal domain CH48_1149 SM00028 Tetratricopeptide repeats CH48_1150 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1150 SM00322 K homology RNA-binding domain CH48_1151 SM01387 CH48_1151 CH48_1154 SM00173 Ras subfamily of RAS small GTPases CH48_1155 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1155 SM00322 K homology RNA-binding domain CH48_1162 SM00382 ATPases associated with a variety of cellular activities CH48_1164 SM01103 CH48_1164 CH48_1167 SM00448 cheY-homologous receiver domain CH48_1167 SM00862 Transcriptional regulatory protein, C terminal CH48_1168 SM00387 Histidine kinase-like ATPases CH48_1168 SM00388 His Kinase A (phosphoacceptor) domain CH48_118 SM00870 CH48_118 CH48_1184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_1184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_1193 SM01091 Transporter associated domain CH48_12 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1209 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH48_1210 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1210 SM00357 Cold shock protein domain CH48_1210 SM00955 CH48_1210 CH48_1212 SM00788 Adenylosuccinate synthetase CH48_1214 SM00244 prohibitin homologues CH48_1215 SM00244 prohibitin homologues CH48_1219 SM00853 MutL C terminal dimerisation domain CH48_1219 SM01340 CH48_1219 CH48_1220 SM00257 Lysin motif CH48_1220 SM00646 CH48_1220 CH48_1226 SM00479 CH48_1226 CH48_1238 SM00841 Elongation factor P, C-terminal CH48_1238 SM01185 CH48_1238 CH48_1242 SM00883 Chaperonin 10 Kd subunit CH48_1255 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_126 SM00382 ATPases associated with a variety of cellular activities CH48_1263 SM00382 ATPases associated with a variety of cellular activities CH48_1264 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_1270 SM00382 ATPases associated with a variety of cellular activities CH48_1271 SM00965 Secretin and TonB N terminus short domain CH48_128 SM00843 CH48_128 CH48_1284 SM00382 ATPases associated with a variety of cellular activities CH48_129 SM00344 helix_turn_helix ASNC type CH48_1294 SM00342 helix_turn_helix, arabinose operon control protein CH48_1308 SM00387 Histidine kinase-like ATPases CH48_1308 SM00388 His Kinase A (phosphoacceptor) domain CH48_1308 SM00448 cheY-homologous receiver domain CH48_1309 SM00421 helix_turn_helix, Lux Regulon CH48_1309 SM00448 cheY-homologous receiver domain CH48_132 SM00382 ATPases associated with a variety of cellular activities CH48_133 SM00382 ATPases associated with a variety of cellular activities CH48_1337 SM00422 helix_turn_helix, mercury resistance CH48_1340 SM00662 RNA polymerases D CH48_1341 SM00363 S4 RNA-binding domain CH48_1341 SM01390 CH48_1341 CH48_135 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1354 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH48_1355 SM01374 CH48_1355 CH48_1359 SM00322 K homology RNA-binding domain CH48_136 SM00382 ATPases associated with a variety of cellular activities CH48_136 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_1362 SM01382 CH48_1362 CH48_1362 SM01383 CH48_1362 CH48_1366 SM01403 CH48_1366 CH48_1371 SM00838 Elongation factor G C-terminus CH48_1371 SM00889 Elongation factor G, domain IV CH48_1384 SM00382 ATPases associated with a variety of cellular activities CH48_1389 SM00382 ATPases associated with a variety of cellular activities CH48_139 SM00357 Cold shock protein domain CH48_1390 SM00062 Bacterial periplasmic substrate-binding proteins CH48_1397 SM00100 Cyclic nucleotide-monophosphate binding domain CH48_1397 SM00419 helix_turn_helix, cAMP Regulatory protein CH48_140 SM00382 ATPases associated with a variety of cellular activities CH48_1401 SM00382 ATPases associated with a variety of cellular activities CH48_1405 SM00354 helix_turn _helix lactose operon repressor CH48_1428 SM00363 S4 RNA-binding domain CH48_1432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_1432 SM00387 Histidine kinase-like ATPases CH48_1432 SM00388 His Kinase A (phosphoacceptor) domain CH48_1433 SM00448 cheY-homologous receiver domain CH48_1433 SM00862 Transcriptional regulatory protein, C terminal CH48_1439 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_1439 SM00732 Likely ribonuclease with RNase H fold. CH48_1440 SM00899 CH48_1440 CH48_1453 SM00421 helix_turn_helix, Lux Regulon CH48_1455 SM00450 Rhodanese Homology Domain CH48_1457 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_1457 SM01134 CH48_1457 CH48_1463 SM00642 Alpha-amylase domain CH48_1464 SM00642 Alpha-amylase domain CH48_1469 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_1473 SM00354 helix_turn _helix lactose operon repressor CH48_1503 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH48_1504 SM00235 Zinc-dependent metalloprotease CH48_1509 SM00869 Autotransporter beta-domain CH48_1513 SM00052 Putative diguanylate phosphodiesterase CH48_1522 SM00052 Putative diguanylate phosphodiesterase CH48_153 SM00382 ATPases associated with a variety of cellular activities CH48_1533 SM00382 ATPases associated with a variety of cellular activities CH48_1534 SM00382 ATPases associated with a variety of cellular activities CH48_154 SM00062 Bacterial periplasmic substrate-binding proteins CH48_154 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_1541 SM00421 helix_turn_helix, Lux Regulon CH48_1541 SM00448 cheY-homologous receiver domain CH48_1542 SM00387 Histidine kinase-like ATPases CH48_1545 SM00912 haemagglutination activity domain CH48_1547 SM00912 haemagglutination activity domain CH48_1554 SM00354 helix_turn _helix lactose operon repressor CH48_157 SM00062 Bacterial periplasmic substrate-binding proteins CH48_157 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_1571 SM00382 ATPases associated with a variety of cellular activities CH48_1580 SM00342 helix_turn_helix, arabinose operon control protein CH48_1582 SM00382 ATPases associated with a variety of cellular activities CH48_1589 SM00342 helix_turn_helix, arabinose operon control protein CH48_1597 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_1600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_1600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_1600 SM01358 CH48_1600 CH48_1603 SM00966 SpoVT / AbrB like domain CH48_1605 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_162 SM00382 ATPases associated with a variety of cellular activities CH48_1621 SM00642 Alpha-amylase domain CH48_1632 SM00387 Histidine kinase-like ATPases CH48_1632 SM00433 TopoisomeraseII CH48_1634 SM00480 DNA polymerase III beta subunit CH48_1635 SM00382 ATPases associated with a variety of cellular activities CH48_1635 SM00760 Bacterial dnaA protein helix-turn-helix domain CH48_1638 SM01234 CH48_1638 CH48_1643 SM00382 ATPases associated with a variety of cellular activities CH48_1643 SM00930 CH48_1643 CH48_1645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_1645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_1647 SM00387 Histidine kinase-like ATPases CH48_1647 SM00388 His Kinase A (phosphoacceptor) domain CH48_1648 SM00421 helix_turn_helix, Lux Regulon CH48_1648 SM00448 cheY-homologous receiver domain CH48_1654 SM00062 Bacterial periplasmic substrate-binding proteins CH48_1657 SM00382 ATPases associated with a variety of cellular activities CH48_1665 SM00382 ATPases associated with a variety of cellular activities CH48_1674 SM01228 CH48_1674 CH48_1676 SM00344 helix_turn_helix ASNC type CH48_1679 SM00327 von Willebrand factor (vWF) type A domain CH48_1680 SM00382 ATPases associated with a variety of cellular activities CH48_1683 SM00382 ATPases associated with a variety of cellular activities CH48_1688 SM00354 helix_turn _helix lactose operon repressor CH48_169 SM00014 Acid phosphatase homologues CH48_1690 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_1690 SM00895 CH48_1690 CH48_170 SM01133 CH48_170 CH48_1703 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH48_1703 SM00474 3'-5' exonuclease CH48_1703 SM00475 5'-3' exonuclease CH48_1703 SM00482 DNA polymerase A domain CH48_1706 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_1707 SM00382 ATPases associated with a variety of cellular activities CH48_1707 SM00448 cheY-homologous receiver domain CH48_1708 SM00091 PAS domain CH48_1708 SM00387 Histidine kinase-like ATPases CH48_1708 SM00388 His Kinase A (phosphoacceptor) domain CH48_171 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_171 SM01134 CH48_171 CH48_1710 SM01230 CH48_1710 CH48_1717 SM00421 helix_turn_helix, Lux Regulon CH48_1718 SM00421 helix_turn_helix, Lux Regulon CH48_1720 SM00421 helix_turn_helix, Lux Regulon CH48_1724 SM00487 DEAD-like helicases superfamily CH48_1724 SM00490 helicase superfamily c-terminal domain CH48_1726 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_1726 SM00954 Region found in RelA / SpoT proteins CH48_1727 SM01409 CH48_1727 CH48_1728 SM00072 Guanylate kinase homologues. CH48_1735 SM00052 Putative diguanylate phosphodiesterase CH48_1735 SM00091 PAS domain CH48_1735 SM00267 diguanylate cyclase CH48_1736 SM00849 Metallo-beta-lactamase superfamily CH48_1747 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH48_1747 SM01232 CH48_1747 CH48_1755 SM00829 Enoylreductase CH48_176 SM00936 Penicillin-binding protein 5, C-terminal domain CH48_1761 SM00450 Rhodanese Homology Domain CH48_1765 SM00971 Serine acetyltransferase, N-terminal CH48_1767 SM00342 helix_turn_helix, arabinose operon control protein CH48_1768 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_1768 SM00387 Histidine kinase-like ATPases CH48_1768 SM00388 His Kinase A (phosphoacceptor) domain CH48_1769 SM00448 cheY-homologous receiver domain CH48_1769 SM00862 Transcriptional regulatory protein, C terminal CH48_177 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_1788 SM00382 ATPases associated with a variety of cellular activities CH48_1788 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_1791 SM00354 helix_turn _helix lactose operon repressor CH48_1792 SM00487 DEAD-like helicases superfamily CH48_1792 SM00490 helicase superfamily c-terminal domain CH48_18 SM00421 helix_turn_helix, Lux Regulon CH48_180 SM00382 ATPases associated with a variety of cellular activities CH48_180 SM00930 CH48_180 CH48_1800 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_1807 SM00382 ATPases associated with a variety of cellular activities CH48_1829 SM00382 ATPases associated with a variety of cellular activities CH48_1834 SM00382 ATPases associated with a variety of cellular activities CH48_1856 SM00060 Fibronectin type 3 domain CH48_1858 SM00487 DEAD-like helicases superfamily CH48_1858 SM00490 helicase superfamily c-terminal domain CH48_1860 SM00357 Cold shock protein domain CH48_1860 SM00382 ATPases associated with a variety of cellular activities CH48_1860 SM00959 Rho termination factor, N-terminal domain CH48_1865 SM00984 UDP binding domain CH48_187 SM00382 ATPases associated with a variety of cellular activities CH48_1886 SM01219 CH48_1886 CH48_1900 SM00341 Helicase and RNase D C-terminal CH48_1900 SM00487 DEAD-like helicases superfamily CH48_1900 SM00490 helicase superfamily c-terminal domain CH48_1900 SM00956 CH48_1900 CH48_1920 SM00382 ATPases associated with a variety of cellular activities CH48_1920 SM00962 SRP54-type protein, GTPase domain CH48_1920 SM00963 SRP54-type protein, helical bundle domain CH48_1921 SM00382 ATPases associated with a variety of cellular activities CH48_1930 SM00382 ATPases associated with a variety of cellular activities CH48_1931 SM00382 ATPases associated with a variety of cellular activities CH48_1941 SM00382 ATPases associated with a variety of cellular activities CH48_195 SM00518 AP endonuclease family 2 CH48_1961 SM01004 Delta-aminolevulinic acid dehydratase CH48_1962 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH48_1989 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH48_1989 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH48_1990 SM00649 Ribosomal protein L11/L12 CH48_1995 SM00663 RNA polymerase I subunit A N-terminus CH48_1997 SM00876 Biotin and Thiamin Synthesis associated domain CH48_2 SM00825 Beta-ketoacyl synthase CH48_20 SM00450 Rhodanese Homology Domain CH48_200 SM00862 Transcriptional regulatory protein, C terminal CH48_2008 SM00411 bacterial (prokaryotic) histone like domain CH48_2010 SM01209 CH48_2010 CH48_2010 SM01210 CH48_2010 CH48_2011 SM00798 AICARFT/IMPCHase bienzyme CH48_2011 SM00851 MGS-like domain CH48_2025 SM00346 helix_turn_helix isocitrate lyase regulation CH48_2026 SM01018 B12 binding domain CH48_2027 SM00912 haemagglutination activity domain CH48_2036 SM00382 ATPases associated with a variety of cellular activities CH48_2042 SM00563 Phosphate acyltransferases CH48_2051 SM00829 Enoylreductase CH48_2052 SM00382 ATPases associated with a variety of cellular activities CH48_2053 SM01005 Alanine racemase, C-terminal domain CH48_2060 SM00530 Helix-turn-helix XRE-family like proteins CH48_2067 SM00382 ATPases associated with a variety of cellular activities CH48_2070 SM00062 Bacterial periplasmic substrate-binding proteins CH48_2074 SM00357 Cold shock protein domain CH48_2075 SM00357 Cold shock protein domain CH48_2077 SM00267 diguanylate cyclase CH48_2084 SM00878 Biotin carboxylase C-terminal domain CH48_2089 SM00829 Enoylreductase CH48_209 SM00841 Elongation factor P, C-terminal CH48_209 SM01185 CH48_209 CH48_2091 SM00052 Putative diguanylate phosphodiesterase CH48_2091 SM00267 diguanylate cyclase CH48_2096 SM00316 Ribosomal protein S1-like RNA-binding domain CH48_212 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_212 SM00895 CH48_212 CH48_2136 SM00530 Helix-turn-helix XRE-family like proteins CH48_2138 SM00831 Cation transporter/ATPase, N-terminus CH48_214 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH48_2140 SM00354 helix_turn _helix lactose operon repressor CH48_2142 SM00642 Alpha-amylase domain CH48_2144 SM00460 Transglutaminase/protease-like homologues CH48_215 SM00014 Acid phosphatase homologues CH48_2156 SM00382 ATPases associated with a variety of cellular activities CH48_2162 SM00382 ATPases associated with a variety of cellular activities CH48_2169 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_217 SM00052 Putative diguanylate phosphodiesterase CH48_2170 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_2180 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2181 SM00073 Histidine Phosphotransfer domain CH48_2181 SM00091 PAS domain CH48_2181 SM00387 Histidine kinase-like ATPases CH48_2181 SM00388 His Kinase A (phosphoacceptor) domain CH48_2181 SM00448 cheY-homologous receiver domain CH48_2184 SM00749 bacterial OsmY and nodulation domain CH48_2195 SM00829 Enoylreductase CH48_22 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_2207 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_2207 SM00895 CH48_2207 CH48_221 SM00382 ATPases associated with a variety of cellular activities CH48_2211 SM00858 CH48_2211 CH48_2217 SM00869 Autotransporter beta-domain CH48_2218 SM00869 Autotransporter beta-domain CH48_2237 SM00400 zinc finger CH48_2237 SM00493 CH48_2237 CH48_2237 SM00766 DNA primase DnaG DnaB-binding CH48_224 SM00363 S4 RNA-binding domain CH48_2240 SM01207 CH48_2240 CH48_2241 SM00905 Dihydroneopterin aldolase CH48_2243 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_2244 SM00287 Bacterial SH3 domain homologues CH48_2245 SM01118 CH48_2245 CH48_225 SM00487 DEAD-like helicases superfamily CH48_225 SM00490 helicase superfamily c-terminal domain CH48_2259 SM00387 Histidine kinase-like ATPases CH48_2259 SM00433 TopoisomeraseII CH48_2263 SM00434 DNA Topoisomerase IV CH48_2264 SM00563 Phosphate acyltransferases CH48_2266 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2269 SM00342 helix_turn_helix, arabinose operon control protein CH48_2292 SM00342 helix_turn_helix, arabinose operon control protein CH48_2297 SM00382 ATPases associated with a variety of cellular activities CH48_2302 SM00382 ATPases associated with a variety of cellular activities CH48_2308 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_2317 SM00382 ATPases associated with a variety of cellular activities CH48_2322 SM00382 ATPases associated with a variety of cellular activities CH48_2327 SM00858 CH48_2327 CH48_2341 SM00862 Transcriptional regulatory protein, C terminal CH48_2368 SM00052 Putative diguanylate phosphodiesterase CH48_2368 SM00091 PAS domain CH48_2368 SM00267 diguanylate cyclase CH48_2377 SM00354 helix_turn _helix lactose operon repressor CH48_2379 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_2387 SM00382 ATPases associated with a variety of cellular activities CH48_239 SM01057 Eukaryotic-type carbonic anhydrase CH48_2412 SM00478 endonuclease III CH48_2412 SM00525 CH48_2412 CH48_2417 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2419 SM01152 CH48_2419 CH48_2426 SM00732 Likely ribonuclease with RNase H fold. CH48_2431 SM00731 SprT homologues. CH48_2432 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH48_2441 SM00861 Transketolase, pyrimidine binding domain CH48_2442 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_2445 SM00194 Protein tyrosine phosphatase, catalytic domain CH48_2445 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH48_2481 SM00257 Lysin motif CH48_2483 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH48_2483 SM00534 ATPase domain of DNA mismatch repair MUTS family CH48_249 SM00530 Helix-turn-helix XRE-family like proteins CH48_2500 SM00382 ATPases associated with a variety of cellular activities CH48_2502 SM00382 ATPases associated with a variety of cellular activities CH48_2504 SM00825 Beta-ketoacyl synthase CH48_2507 SM00822 CH48_2507 CH48_2510 SM01235 CH48_2510 CH48_2512 SM00838 Elongation factor G C-terminus CH48_2512 SM00889 Elongation factor G, domain IV CH48_2513 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH48_252 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_252 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_2521 SM01012 CH48_2521 CH48_2524 SM00382 ATPases associated with a variety of cellular activities CH48_2530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_2538 SM00382 ATPases associated with a variety of cellular activities CH48_2540 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH48_2551 SM01091 Transporter associated domain CH48_2553 SM00382 ATPases associated with a variety of cellular activities CH48_2553 SM00962 SRP54-type protein, GTPase domain CH48_2553 SM00963 SRP54-type protein, helical bundle domain CH48_2560 SM00448 cheY-homologous receiver domain CH48_2560 SM00850 LytTr DNA-binding domain CH48_2562 SM00830 Chorismate mutase type II CH48_2563 SM00830 Chorismate mutase type II CH48_2566 SM00382 ATPases associated with a variety of cellular activities CH48_2566 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_2568 SM00363 S4 RNA-binding domain CH48_2578 SM00155 Phospholipase D. Active site motifs. CH48_2579 SM00881 CoA binding domain CH48_2580 SM01144 CH48_2580 CH48_2582 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH48_2587 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_2597 SM00062 Bacterial periplasmic substrate-binding proteins CH48_26 SM00387 Histidine kinase-like ATPases CH48_2600 SM00382 ATPases associated with a variety of cellular activities CH48_2605 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_2611 SM00710 Parallel beta-helix repeats CH48_2611 SM00912 haemagglutination activity domain CH48_2619 SM00900 CH48_2619 CH48_262 SM00387 Histidine kinase-like ATPases CH48_262 SM00388 His Kinase A (phosphoacceptor) domain CH48_263 SM00421 helix_turn_helix, Lux Regulon CH48_263 SM00448 cheY-homologous receiver domain CH48_2635 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH48_2637 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_2637 SM00866 CH48_2637 CH48_264 SM00387 Histidine kinase-like ATPases CH48_264 SM00388 His Kinase A (phosphoacceptor) domain CH48_264 SM00448 cheY-homologous receiver domain CH48_2641 SM01068 Putative carbohydrate binding domain CH48_2655 SM00448 cheY-homologous receiver domain CH48_2655 SM00862 Transcriptional regulatory protein, C terminal CH48_2656 SM00091 PAS domain CH48_2656 SM00387 Histidine kinase-like ATPases CH48_2656 SM00388 His Kinase A (phosphoacceptor) domain CH48_266 SM00434 DNA Topoisomerase IV CH48_2660 SM00642 Alpha-amylase domain CH48_2670 SM01323 CH48_2670 CH48_2683 SM00861 Transketolase, pyrimidine binding domain CH48_2686 SM00981 CH48_2686 CH48_27 SM00421 helix_turn_helix, Lux Regulon CH48_27 SM00448 cheY-homologous receiver domain CH48_2702 SM00382 ATPases associated with a variety of cellular activities CH48_2702 SM00994 ClpX C4-type zinc finger CH48_2702 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_2703 SM00382 ATPases associated with a variety of cellular activities CH48_2703 SM00464 Found in ATP-dependent protease La (LON) CH48_2704 SM00411 bacterial (prokaryotic) histone like domain CH48_2707 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_2713 SM00344 helix_turn_helix ASNC type CH48_2714 SM00382 ATPases associated with a variety of cellular activities CH48_2715 SM00382 ATPases associated with a variety of cellular activities CH48_2716 SM00938 Nitrogen regulatory protein P-II CH48_2725 SM00382 ATPases associated with a variety of cellular activities CH48_2744 SM00382 ATPases associated with a variety of cellular activities CH48_2746 SM00493 CH48_2746 CH48_2747 SM00387 Histidine kinase-like ATPases CH48_275 SM00852 Probable molybdopterin binding domain CH48_2767 SM00422 helix_turn_helix, mercury resistance CH48_2769 SM00244 prohibitin homologues CH48_2771 SM00822 CH48_2771 CH48_2773 SM00382 ATPases associated with a variety of cellular activities CH48_2776 SM01001 AIR carboxylase CH48_2779 SM00840 CH48_2779 CH48_278 SM01060 CH48_278 CH48_2784 SM00382 ATPases associated with a variety of cellular activities CH48_2788 SM00448 cheY-homologous receiver domain CH48_2788 SM00862 Transcriptional regulatory protein, C terminal CH48_2791 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH48_2795 SM00382 ATPases associated with a variety of cellular activities CH48_280 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH48_2800 SM00421 helix_turn_helix, Lux Regulon CH48_2802 SM00357 Cold shock protein domain CH48_2804 SM00267 diguanylate cyclase CH48_2806 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2809 SM00936 Penicillin-binding protein 5, C-terminal domain CH48_2820 SM00382 ATPases associated with a variety of cellular activities CH48_2823 SM00062 Bacterial periplasmic substrate-binding proteins CH48_2826 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_2826 SM01091 Transporter associated domain CH48_2829 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2846 SM01081 Putative carbohydrate binding domain CH48_2849 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_2857 SM00448 cheY-homologous receiver domain CH48_2857 SM00862 Transcriptional regulatory protein, C terminal CH48_2858 SM00387 Histidine kinase-like ATPases CH48_2858 SM00388 His Kinase A (phosphoacceptor) domain CH48_2871 SM00796 Allophanate hydrolase subunit 1 CH48_2872 SM00797 Allophanate hydrolase subunit 2 CH48_2882 SM00861 Transketolase, pyrimidine binding domain CH48_2885 SM00881 CoA binding domain CH48_2907 SM00855 Phosphoglycerate mutase family CH48_2908 SM00477 DNA/RNA non-specific endonuclease CH48_2908 SM00892 DNA/RNA non-specific endonuclease CH48_2917 SM00382 ATPases associated with a variety of cellular activities CH48_2925 SM00990 CH48_2925 CH48_2927 SM00482 DNA polymerase A domain CH48_2933 SM00530 Helix-turn-helix XRE-family like proteins CH48_2934 SM00530 Helix-turn-helix XRE-family like proteins CH48_2961 SM00382 ATPases associated with a variety of cellular activities CH48_2965 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2965 SM00876 Biotin and Thiamin Synthesis associated domain CH48_2969 SM00382 ATPases associated with a variety of cellular activities CH48_2970 SM00487 DEAD-like helicases superfamily CH48_2970 SM00490 helicase superfamily c-terminal domain CH48_2973 SM00729 Elongator protein 3, MiaB family, Radical SAM CH48_2980 SM00382 ATPases associated with a variety of cellular activities CH48_2983 SM00487 DEAD-like helicases superfamily CH48_2983 SM00490 helicase superfamily c-terminal domain CH48_2986 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_2990 SM01118 CH48_2990 CH48_2991 SM00507 HNH nucleases CH48_2994 SM00382 ATPases associated with a variety of cellular activities CH48_3003 SM00382 ATPases associated with a variety of cellular activities CH48_3004 SM00450 Rhodanese Homology Domain CH48_3009 SM00382 ATPases associated with a variety of cellular activities CH48_3018 SM00487 DEAD-like helicases superfamily CH48_3018 SM00488 CH48_3018 CH48_3018 SM00491 CH48_3018 CH48_3023 SM00903 Flavin reductase like domain CH48_3025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_3025 SM00091 PAS domain CH48_3025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_3026 SM00382 ATPases associated with a variety of cellular activities CH48_3028 SM00062 Bacterial periplasmic substrate-binding proteins CH48_3028 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_3034 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CH48_3041 SM00382 ATPases associated with a variety of cellular activities CH48_3044 SM00852 Probable molybdopterin binding domain CH48_3047 SM00382 ATPases associated with a variety of cellular activities CH48_3052 SM00829 Enoylreductase CH48_3057 SM00354 helix_turn _helix lactose operon repressor CH48_3059 SM00382 ATPases associated with a variety of cellular activities CH48_306 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_306 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH48_3061 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_3061 SM00382 ATPases associated with a variety of cellular activities CH48_3062 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_307 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH48_3078 SM00919 Malic enzyme, NAD binding domain CH48_3078 SM01274 CH48_3078 CH48_3093 SM01091 Transporter associated domain CH48_3101 SM00382 ATPases associated with a variety of cellular activities CH48_3106 SM01350 CH48_3106 CH48_3118 SM00382 ATPases associated with a variety of cellular activities CH48_3129 SM00382 ATPases associated with a variety of cellular activities CH48_3136 SM00877 CH48_3136 CH48_3137 SM00877 CH48_3137 CH48_314 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_3145 SM00877 CH48_3145 CH48_3146 SM00877 CH48_3146 CH48_3153 SM00877 CH48_3153 CH48_3154 SM00877 CH48_3154 CH48_3156 SM00342 helix_turn_helix, arabinose operon control protein CH48_3172 SM00382 ATPases associated with a variety of cellular activities CH48_3176 SM00855 Phosphoglycerate mutase family CH48_3179 SM00421 helix_turn_helix, Lux Regulon CH48_3188 SM00382 ATPases associated with a variety of cellular activities CH48_3188 SM01086 C-terminal, D2-small domain, of ClpB protein CH48_3210 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_3210 SM01134 CH48_3210 CH48_3212 SM00260 Two component signalling adaptor domain CH48_3212 SM00448 cheY-homologous receiver domain CH48_3214 SM00822 CH48_3214 CH48_3218 SM00382 ATPases associated with a variety of cellular activities CH48_322 SM00354 helix_turn _helix lactose operon repressor CH48_3222 SM00387 Histidine kinase-like ATPases CH48_3223 SM00421 helix_turn_helix, Lux Regulon CH48_3223 SM00448 cheY-homologous receiver domain CH48_3224 SM00448 cheY-homologous receiver domain CH48_3226 SM00091 PAS domain CH48_3226 SM00387 Histidine kinase-like ATPases CH48_3251 SM00062 Bacterial periplasmic substrate-binding proteins CH48_3251 SM00387 Histidine kinase-like ATPases CH48_3251 SM00388 His Kinase A (phosphoacceptor) domain CH48_3251 SM00448 cheY-homologous receiver domain CH48_3252 SM00421 helix_turn_helix, Lux Regulon CH48_3252 SM00448 cheY-homologous receiver domain CH48_3269 SM00344 helix_turn_helix ASNC type CH48_3271 SM00829 Enoylreductase CH48_3274 SM01038 Beta galactosidase small chain CH48_3275 SM00354 helix_turn _helix lactose operon repressor CH48_3276 SM00357 Cold shock protein domain CH48_3279 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_3279 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_3283 SM00831 Cation transporter/ATPase, N-terminus CH48_3284 SM00829 Enoylreductase CH48_3290 SM00073 Histidine Phosphotransfer domain CH48_3290 SM00260 Two component signalling adaptor domain CH48_3290 SM00387 Histidine kinase-like ATPases CH48_3290 SM01231 CH48_3290 CH48_3291 SM00260 Two component signalling adaptor domain CH48_3292 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_3292 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_3292 SM00319 Homologues of the ligand binding domain of Tar CH48_3293 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_3293 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_3293 SM00319 Homologues of the ligand binding domain of Tar CH48_3294 SM00138 Methyltransferase, chemotaxis proteins CH48_3295 SM00448 cheY-homologous receiver domain CH48_3296 SM00448 cheY-homologous receiver domain CH48_330 SM00052 Putative diguanylate phosphodiesterase CH48_3304 SM00634 Bacterial Ig-like domain (group 1) CH48_3306 SM00858 CH48_3306 CH48_3315 SM00047 Lysozyme subfamily 2 CH48_3327 SM00382 ATPases associated with a variety of cellular activities CH48_333 SM00382 ATPases associated with a variety of cellular activities CH48_3336 SM00478 endonuclease III CH48_3337 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_3338 SM00342 helix_turn_helix, arabinose operon control protein CH48_3349 SM00062 Bacterial periplasmic substrate-binding proteins CH48_3349 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH48_3351 SM00382 ATPases associated with a variety of cellular activities CH48_336 SM00062 Bacterial periplasmic substrate-binding proteins CH48_3364 SM00530 Helix-turn-helix XRE-family like proteins CH48_3365 SM00612 CH48_3365 CH48_3369 SM00903 Flavin reductase like domain CH48_3382 SM00642 Alpha-amylase domain CH48_3386 SM00421 helix_turn_helix, Lux Regulon CH48_3386 SM00448 cheY-homologous receiver domain CH48_3387 SM00465 GIY-YIG type nucleases (URI domain) CH48_3431 SM00530 Helix-turn-helix XRE-family like proteins CH48_3447 SM01400 CH48_3447 CH48_345 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH48_3451 SM00937 CH48_3451 CH48_3458 SM00267 diguanylate cyclase CH48_3463 SM00481 DNA polymerase alpha chain like domain CH48_3478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_3478 SM00387 Histidine kinase-like ATPases CH48_3481 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_349 SM00342 helix_turn_helix, arabinose operon control protein CH48_3493 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_3493 SM00866 CH48_3493 CH48_3497 SM00869 Autotransporter beta-domain CH48_3500 SM00257 Lysin motif CH48_3508 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_3508 SM01134 CH48_3508 CH48_3512 SM00363 S4 RNA-binding domain CH48_352 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_3526 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_3527 SM00382 ATPases associated with a variety of cellular activities CH48_3530 SM00382 ATPases associated with a variety of cellular activities CH48_3532 SM00257 Lysin motif CH48_3543 SM00487 DEAD-like helicases superfamily CH48_3543 SM00491 CH48_3543 CH48_3547 SM00341 Helicase and RNase D C-terminal CH48_3547 SM00474 3'-5' exonuclease CH48_3565 SM01022 CH48_3565 CH48_3567 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_3567 SM00091 PAS domain CH48_3567 SM00267 diguanylate cyclase CH48_3568 SM00972 Spore Coat Protein U domain CH48_3571 SM00972 Spore Coat Protein U domain CH48_3572 SM00972 Spore Coat Protein U domain CH48_3573 SM00972 Spore Coat Protein U domain CH48_3578 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_3579 SM00945 ProQ/FINO family CH48_3580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_3580 SM00245 tail specific protease CH48_3584 SM00346 helix_turn_helix isocitrate lyase regulation CH48_3585 SM00644 CH48_3585 CH48_359 SM00354 helix_turn _helix lactose operon repressor CH48_3590 SM00382 ATPases associated with a variety of cellular activities CH48_3607 SM00382 ATPases associated with a variety of cellular activities CH48_3617 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH48_3622 SM00873 B3/4 domain CH48_3622 SM00874 tRNA synthetase B5 domain CH48_3622 SM00896 Ferredoxin-fold anticodon binding domain CH48_3623 SM00411 bacterial (prokaryotic) histone like domain CH48_3628 SM00382 ATPases associated with a variety of cellular activities CH48_3652 SM00382 ATPases associated with a variety of cellular activities CH48_366 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_366 SM00091 PAS domain CH48_366 SM00267 diguanylate cyclase CH48_3667 SM00354 helix_turn _helix lactose operon repressor CH48_367 SM00825 Beta-ketoacyl synthase CH48_3672 SM00479 CH48_3672 CH48_3682 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_3688 SM00363 S4 RNA-binding domain CH48_3699 SM00382 ATPases associated with a variety of cellular activities CH48_3700 SM00382 ATPases associated with a variety of cellular activities CH48_3706 SM00382 ATPases associated with a variety of cellular activities CH48_3713 SM00953 CH48_3713 CH48_3715 SM00091 PAS domain CH48_3715 SM00382 ATPases associated with a variety of cellular activities CH48_3718 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH48_3722 SM00148 Phospholipase C, catalytic domain (part); domain X CH48_3723 SM00890 Domain of unknown function CH48_3732 SM00382 ATPases associated with a variety of cellular activities CH48_3732 SM00487 DEAD-like helicases superfamily CH48_3732 SM00490 helicase superfamily c-terminal domain CH48_3732 SM00847 Helicase associated domain (HA2) Add an annotation CH48_3734 SM00530 Helix-turn-helix XRE-family like proteins CH48_3735 SM00020 Trypsin-like serine protease CH48_3738 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_3738 SM00387 Histidine kinase-like ATPases CH48_3738 SM00388 His Kinase A (phosphoacceptor) domain CH48_3739 SM00448 cheY-homologous receiver domain CH48_3739 SM00862 Transcriptional regulatory protein, C terminal CH48_3743 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH48_3743 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH48_3746 SM00100 Cyclic nucleotide-monophosphate binding domain CH48_3746 SM00419 helix_turn_helix, cAMP Regulatory protein CH48_3750 SM00871 Bacterial transcription activator, effector binding domain CH48_3751 SM00822 CH48_3751 CH48_3752 SM00098 Alkaline phosphatase homologues CH48_3761 SM00644 CH48_3761 CH48_3768 SM00354 helix_turn _helix lactose operon repressor CH48_377 SM00463 Small MutS-related domain CH48_3771 SM00857 Resolvase, N terminal domain CH48_3777 SM00062 Bacterial periplasmic substrate-binding proteins CH48_3780 SM00344 helix_turn_helix ASNC type CH48_3782 SM00347 helix_turn_helix multiple antibiotic resistance protein CH48_3789 SM00421 helix_turn_helix, Lux Regulon CH48_3832 SM00421 helix_turn_helix, Lux Regulon CH48_3837 SM00354 helix_turn _helix lactose operon repressor CH48_3843 SM00342 helix_turn_helix, arabinose operon control protein CH48_3845 SM00382 ATPases associated with a variety of cellular activities CH48_3850 SM00382 ATPases associated with a variety of cellular activities CH48_3861 SM00342 helix_turn_helix, arabinose operon control protein CH48_3863 SM00900 CH48_3863 CH48_3865 SM00478 endonuclease III CH48_3865 SM00525 CH48_3865 CH48_3872 SM00357 Cold shock protein domain CH48_3872 SM00955 CH48_3872 CH48_3876 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_3876 SM01134 CH48_3876 CH48_3878 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_3882 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH48_3885 SM00530 Helix-turn-helix XRE-family like proteins CH48_3887 SM00028 Tetratricopeptide repeats CH48_3889 SM00014 Acid phosphatase homologues CH48_3895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH48_3895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH48_3895 SM00493 CH48_3895 CH48_3898 SM00822 CH48_3898 CH48_3901 SM00363 S4 RNA-binding domain CH48_3903 SM00481 DNA polymerase alpha chain like domain CH48_3910 SM00749 bacterial OsmY and nodulation domain CH48_392 SM00382 ATPases associated with a variety of cellular activities CH48_3921 SM00052 Putative diguanylate phosphodiesterase CH48_3922 SM00155 Phospholipase D. Active site motifs. CH48_3924 SM00382 ATPases associated with a variety of cellular activities CH48_3925 SM00382 ATPases associated with a variety of cellular activities CH48_3933 SM00528 Domain in histone-like proteins of HNS family CH48_3934 SM00984 UDP binding domain CH48_3935 SM00448 cheY-homologous receiver domain CH48_3946 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH48_3946 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH48_3946 SM00493 CH48_3946 CH48_3950 SM00870 CH48_3950 CH48_3955 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH48_3958 SM00763 PrkA AAA domain CH48_3964 SM00052 Putative diguanylate phosphodiesterase CH48_3964 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_3964 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_3964 SM00091 PAS domain CH48_3964 SM00267 diguanylate cyclase CH48_3966 SM01005 Alanine racemase, C-terminal domain CH48_3969 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_3975 SM00836 DALR anticodon binding domain CH48_3975 SM01016 Arginyl tRNA synthetase N terminal dom CH48_3991 SM00382 ATPases associated with a variety of cellular activities CH48_4 SM00822 CH48_4 CH48_4001 SM01007 Class II Aldolase and Adducin N-terminal domain CH48_4003 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_4003 SM01134 CH48_4003 CH48_4004 SM00387 Histidine kinase-like ATPases CH48_4005 SM00448 cheY-homologous receiver domain CH48_4014 SM00458 Ricin-type beta-trefoil CH48_4017 SM00421 helix_turn_helix, Lux Regulon CH48_4033 SM00479 CH48_4033 CH48_4036 SM01022 CH48_4036 CH48_4038 SM00487 DEAD-like helicases superfamily CH48_4038 SM00490 helicase superfamily c-terminal domain CH48_4046 SM01091 Transporter associated domain CH48_4053 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_4053 SM00091 PAS domain CH48_4053 SM00267 diguanylate cyclase CH48_4058 SM00357 Cold shock protein domain CH48_4068 SM00342 helix_turn_helix, arabinose operon control protein CH48_4072 SM00382 ATPases associated with a variety of cellular activities CH48_4073 SM00090 RIO-like kinase CH48_4076 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_4076 SM00091 PAS domain CH48_4076 SM00267 diguanylate cyclase CH48_4080 SM00342 helix_turn_helix, arabinose operon control protein CH48_4092 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_4092 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_4094 SM00354 helix_turn _helix lactose operon repressor CH48_4095 SM00640 Glycosyl hydrolases family 32 CH48_4106 SM01329 CH48_4106 CH48_4113 SM00448 cheY-homologous receiver domain CH48_4113 SM00862 Transcriptional regulatory protein, C terminal CH48_4114 SM00387 Histidine kinase-like ATPases CH48_4114 SM00388 His Kinase A (phosphoacceptor) domain CH48_4115 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH48_412 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH48_412 SM00292 breast cancer carboxy-terminal domain CH48_412 SM00532 Ligase N family CH48_4120 SM00382 ATPases associated with a variety of cellular activities CH48_4122 SM00487 DEAD-like helicases superfamily CH48_4122 SM00490 helicase superfamily c-terminal domain CH48_4122 SM00982 CH48_4122 CH48_4122 SM01058 CarD-like/TRCF domain CH48_413 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH48_4137 SM00382 ATPases associated with a variety of cellular activities CH48_4145 SM00220 Serine/Threonine protein kinases, catalytic domain CH48_4151 SM00155 Phospholipase D. Active site motifs. CH48_4163 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH48_4166 SM00857 Resolvase, N terminal domain CH48_4182 SM00470 ParB-like nuclease domain CH48_4189 SM00194 Protein tyrosine phosphatase, catalytic domain CH48_4189 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH48_419 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_419 SM00387 Histidine kinase-like ATPases CH48_419 SM00388 His Kinase A (phosphoacceptor) domain CH48_420 SM00448 cheY-homologous receiver domain CH48_420 SM00862 Transcriptional regulatory protein, C terminal CH48_4202 SM00342 helix_turn_helix, arabinose operon control protein CH48_4211 SM00382 ATPases associated with a variety of cellular activities CH48_422 SM00382 ATPases associated with a variety of cellular activities CH48_4226 SM00364 Leucine-rich repeats, bacterial type CH48_424 SM00382 ATPases associated with a variety of cellular activities CH48_433 SM01130 CH48_433 CH48_444 SM00919 Malic enzyme, NAD binding domain CH48_444 SM01274 CH48_444 CH48_448 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH48_45 SM01091 Transporter associated domain CH48_451 SM00421 helix_turn_helix, Lux Regulon CH48_451 SM00448 cheY-homologous receiver domain CH48_47 SM00421 helix_turn_helix, Lux Regulon CH48_476 SM01130 CH48_476 CH48_490 SM00382 ATPases associated with a variety of cellular activities CH48_496 SM00924 MgtE intracellular N domain CH48_497 SM00052 Putative diguanylate phosphodiesterase CH48_497 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH48_497 SM00091 PAS domain CH48_497 SM00267 diguanylate cyclase CH48_5 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH48_505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_505 SM00387 Histidine kinase-like ATPases CH48_505 SM00388 His Kinase A (phosphoacceptor) domain CH48_506 SM00448 cheY-homologous receiver domain CH48_506 SM00862 Transcriptional regulatory protein, C terminal CH48_509 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH48_515 SM00420 helix_turn_helix, Deoxyribose operon repressor CH48_515 SM01134 CH48_515 CH48_516 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_528 SM00116 Domain in cystathionine beta-synthase and other proteins. CH48_528 SM01240 CH48_528 CH48_533 SM00382 ATPases associated with a variety of cellular activities CH48_534 SM00564 beta-propeller repeat CH48_538 SM00530 Helix-turn-helix XRE-family like proteins CH48_539 SM00028 Tetratricopeptide repeats CH48_541 SM00562 CH48_541 CH48_542 SM00247 Beta/gamma crystallins CH48_544 SM01359 CH48_544 CH48_544 SM01360 CH48_544 CH48_546 SM00869 Autotransporter beta-domain CH48_552 SM00271 DnaJ molecular chaperone homology domain CH48_572 SM00938 Nitrogen regulatory protein P-II CH48_574 SM00382 ATPases associated with a variety of cellular activities CH48_574 SM00448 cheY-homologous receiver domain CH48_576 SM00387 Histidine kinase-like ATPases CH48_576 SM00388 His Kinase A (phosphoacceptor) domain CH48_578 SM01211 CH48_578 CH48_579 SM00062 Bacterial periplasmic substrate-binding proteins CH48_591 SM00358 Double-stranded RNA binding motif CH48_591 SM00535 Ribonuclease III family CH48_601 SM00487 DEAD-like helicases superfamily CH48_601 SM00490 helicase superfamily c-terminal domain CH48_604 SM00248 ankyrin repeats CH48_608 SM00986 Uracil DNA glycosylase superfamily CH48_608 SM00987 UreE urease accessory protein, C-terminal domain CH48_62 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH48_627 SM00382 ATPases associated with a variety of cellular activities CH48_63 SM00992 Hemimethylated DNA-binding protein YccV like CH48_631 SM00342 helix_turn_helix, arabinose operon control protein CH48_64 SM00881 CoA binding domain CH48_649 SM00988 UreE urease accessory protein, N-terminal domain CH48_653 SM00382 ATPases associated with a variety of cellular activities CH48_654 SM00382 ATPases associated with a variety of cellular activities CH48_66 SM00851 MGS-like domain CH48_660 SM00450 Rhodanese Homology Domain CH48_662 SM00357 Cold shock protein domain CH48_667 SM00342 helix_turn_helix, arabinose operon control protein CH48_672 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_678 SM00382 ATPases associated with a variety of cellular activities CH48_682 SM00479 CH48_682 CH48_685 SM00849 Metallo-beta-lactamase superfamily CH48_686 SM00257 Lysin motif CH48_693 SM00825 Beta-ketoacyl synthase CH48_703 SM00382 ATPases associated with a variety of cellular activities CH48_703 SM00930 CH48_703 CH48_711 SM01322 CH48_711 CH48_715 SM00977 TilS substrate C-terminal domain CH48_719 SM00481 DNA polymerase alpha chain like domain CH48_725 SM00935 Outer membrane protein (OmpH-like) CH48_727 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_736 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_745 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH48_745 SM00475 5'-3' exonuclease CH48_755 SM00925 MltA specific insert domain CH48_759 SM00646 CH48_759 CH48_772 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH48_774 SM00927 DNA mismatch repair enzyme MutH CH48_778 SM00563 Phosphate acyltransferases CH48_78 SM00825 Beta-ketoacyl synthase CH48_781 SM00354 helix_turn _helix lactose operon repressor CH48_786 SM00849 Metallo-beta-lactamase superfamily CH48_787 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH48_789 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_789 SM00319 Homologues of the ligand binding domain of Tar CH48_791 SM00862 Transcriptional regulatory protein, C terminal CH48_802 SM00382 ATPases associated with a variety of cellular activities CH48_806 SM00947 Carbonic anhydrase CH48_808 SM00822 CH48_808 CH48_810 SM00271 DnaJ molecular chaperone homology domain CH48_812 SM00091 PAS domain CH48_812 SM00267 diguanylate cyclase CH48_817 SM00530 Helix-turn-helix XRE-family like proteins CH48_819 SM00530 Helix-turn-helix XRE-family like proteins CH48_821 SM00530 Helix-turn-helix XRE-family like proteins CH48_824 SM00857 Resolvase, N terminal domain CH48_829 SM00382 ATPases associated with a variety of cellular activities CH48_83 SM00382 ATPases associated with a variety of cellular activities CH48_832 SM00937 CH48_832 CH48_838 SM00387 Histidine kinase-like ATPases CH48_838 SM00388 His Kinase A (phosphoacceptor) domain CH48_839 SM00448 cheY-homologous receiver domain CH48_839 SM00862 Transcriptional regulatory protein, C terminal CH48_84 SM00981 CH48_84 CH48_846 SM00822 CH48_846 CH48_854 SM01011 Aminopeptidase P, N-terminal domain CH48_858 SM01192 CH48_858 CH48_858 SM01193 CH48_858 CH48_862 SM00954 Region found in RelA / SpoT proteins CH48_864 SM00073 Histidine Phosphotransfer domain CH48_864 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH48_864 SM00387 Histidine kinase-like ATPases CH48_864 SM00388 His Kinase A (phosphoacceptor) domain CH48_864 SM00448 cheY-homologous receiver domain CH48_865 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH48_866 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH48_877 SM00382 ATPases associated with a variety of cellular activities CH48_879 SM00487 DEAD-like helicases superfamily CH48_879 SM00490 helicase superfamily c-terminal domain CH48_879 SM00847 Helicase associated domain (HA2) Add an annotation CH48_891 SM00382 ATPases associated with a variety of cellular activities CH48_893 SM00947 Carbonic anhydrase CH48_904 SM00342 helix_turn_helix, arabinose operon control protein CH48_909 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH48_909 SM00895 CH48_909 CH48_912 SM00644 CH48_912 CH48_917 SM01240 CH48_917 CH48_922 SM00957 SecA DEAD-like domain CH48_922 SM00958 SecA preprotein cross-linking domain CH48_926 SM00864 Tubulin/FtsZ family, GTPase domain CH48_926 SM00865 Tubulin/FtsZ family, C-terminal domain CH48_927 SM00842 Cell division protein FtsA CH48_93 SM00052 Putative diguanylate phosphodiesterase CH48_94 SM00849 Metallo-beta-lactamase superfamily CH48_942 SM00354 helix_turn _helix lactose operon repressor CH48_948 SM00917 LeuA allosteric (dimerisation) domain CH48_949 SM01329 CH48_949 CH48_965 SM00382 ATPases associated with a variety of cellular activities CH48_966 SM00486 DNA polymerase type-B family CH48_967 SM00487 DEAD-like helicases superfamily CH48_967 SM00490 helicase superfamily c-terminal domain CH48_968 SM00634 Bacterial Ig-like domain (group 1) CH48_970 SM00271 DnaJ molecular chaperone homology domain CH48_974 SM00650 Ribosomal RNA adenine dimethylases CH48_981 SM00851 MGS-like domain CH48_981 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH48_982 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH48_988 SM00904 Riboflavin kinase CH48_992 SM00271 DnaJ molecular chaperone homology domain CH48_995 SM00247 Beta/gamma crystallins CH48_998 SM00852 Probable molybdopterin binding domain