LI89_00010 SM00344 helix_turn_helix ASNC type LI89_00025 SM00327 von Willebrand factor (vWF) type A domain LI89_00030 SM00382 ATPases associated with a variety of cellular activities LI89_00045 SM00382 ATPases associated with a variety of cellular activities LI89_00065 SM00354 helix_turn _helix lactose operon repressor LI89_00075 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_00075 SM00895 LI89_00075 LI89_00125 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LI89_00125 SM00474 3'-5' exonuclease LI89_00125 SM00475 5'-3' exonuclease LI89_00125 SM00482 DNA polymerase A domain LI89_00140 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_00145 SM00382 ATPases associated with a variety of cellular activities LI89_00145 SM00448 cheY-homologous receiver domain LI89_00150 SM00091 PAS domain LI89_00150 SM00387 Histidine kinase-like ATPases LI89_00150 SM00388 His Kinase A (phosphoacceptor) domain LI89_00155 SM01230 LI89_00155 LI89_00190 SM00421 helix_turn_helix, Lux Regulon LI89_00195 SM00421 helix_turn_helix, Lux Regulon LI89_00200 SM00421 helix_turn_helix, Lux Regulon LI89_00220 SM00487 DEAD-like helicases superfamily LI89_00220 SM00490 helicase superfamily c-terminal domain LI89_00230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_00230 SM00954 Region found in RelA / SpoT proteins LI89_00235 SM01409 LI89_00235 LI89_00240 SM00072 Guanylate kinase homologues. LI89_00245 SM00532 Ligase N family LI89_00270 SM00052 Putative diguanylate phosphodiesterase LI89_00270 SM00091 PAS domain LI89_00270 SM00267 diguanylate cyclase LI89_00280 SM00849 Metallo-beta-lactamase superfamily LI89_00330 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain LI89_00330 SM01232 LI89_00330 LI89_00370 SM00829 Enoylreductase LI89_00390 SM00450 Rhodanese Homology Domain LI89_00410 SM00971 Serine acetyltransferase, N-terminal LI89_00420 SM00342 helix_turn_helix, arabinose operon control protein LI89_00425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_00425 SM00387 Histidine kinase-like ATPases LI89_00425 SM00388 His Kinase A (phosphoacceptor) domain LI89_00430 SM00448 cheY-homologous receiver domain LI89_00430 SM00862 Transcriptional regulatory protein, C terminal LI89_00520 SM00382 ATPases associated with a variety of cellular activities LI89_00520 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_00535 SM00354 helix_turn _helix lactose operon repressor LI89_00540 SM00487 DEAD-like helicases superfamily LI89_00540 SM00490 helicase superfamily c-terminal domain LI89_00580 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_00620 SM00382 ATPases associated with a variety of cellular activities LI89_00710 SM00155 Phospholipase D. Active site motifs. LI89_00775 SM00382 ATPases associated with a variety of cellular activities LI89_00800 SM00382 ATPases associated with a variety of cellular activities LI89_00900 SM00060 Fibronectin type 3 domain LI89_00910 SM00487 DEAD-like helicases superfamily LI89_00910 SM00490 helicase superfamily c-terminal domain LI89_00920 SM00357 Cold shock protein domain LI89_00920 SM00382 ATPases associated with a variety of cellular activities LI89_00920 SM00959 Rho termination factor, N-terminal domain LI89_00940 SM00984 UDP binding domain LI89_01045 SM01219 LI89_01045 LI89_01115 SM00341 Helicase and RNase D C-terminal LI89_01115 SM00487 DEAD-like helicases superfamily LI89_01115 SM00490 helicase superfamily c-terminal domain LI89_01115 SM00956 LI89_01115 LI89_01215 SM00382 ATPases associated with a variety of cellular activities LI89_01215 SM00962 SRP54-type protein, GTPase domain LI89_01215 SM00963 SRP54-type protein, helical bundle domain LI89_01220 SM00382 ATPases associated with a variety of cellular activities LI89_01255 SM00382 ATPases associated with a variety of cellular activities LI89_01260 SM00382 ATPases associated with a variety of cellular activities LI89_01310 SM00382 ATPases associated with a variety of cellular activities LI89_01405 SM01004 Delta-aminolevulinic acid dehydratase LI89_01410 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LI89_01525 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. LI89_01525 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LI89_01530 SM00649 Ribosomal protein L11/L12 LI89_01555 SM00663 RNA polymerase I subunit A N-terminus LI89_01560 SM00876 Biotin and Thiamin Synthesis associated domain LI89_01620 SM00411 bacterial (prokaryotic) histone like domain LI89_01630 SM01209 LI89_01630 LI89_01630 SM01210 LI89_01630 LI89_01635 SM00798 AICARFT/IMPCHase bienzyme LI89_01635 SM00851 MGS-like domain LI89_01700 SM00421 helix_turn_helix, Lux Regulon LI89_01700 SM00448 cheY-homologous receiver domain LI89_01705 SM00387 Histidine kinase-like ATPases LI89_01705 SM00388 His Kinase A (phosphoacceptor) domain LI89_01705 SM00448 cheY-homologous receiver domain LI89_01770 SM00342 helix_turn_helix, arabinose operon control protein LI89_01820 SM00382 ATPases associated with a variety of cellular activities LI89_01890 SM00965 Secretin and TonB N terminus short domain LI89_01895 SM00382 ATPases associated with a variety of cellular activities LI89_01920 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_01925 SM00382 ATPases associated with a variety of cellular activities LI89_01965 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_02030 SM00883 Chaperonin 10 Kd subunit LI89_02055 SM00841 Elongation factor P, C-terminal LI89_02055 SM01185 LI89_02055 LI89_02115 SM00479 LI89_02115 LI89_02150 SM00257 Lysin motif LI89_02150 SM00646 LI89_02150 LI89_02155 SM00853 MutL C terminal dimerisation domain LI89_02155 SM01340 LI89_02155 LI89_02175 SM00244 prohibitin homologues LI89_02180 SM00244 prohibitin homologues LI89_02190 SM00788 Adenylosuccinate synthetase LI89_02200 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_02200 SM00357 Cold shock protein domain LI89_02200 SM00955 LI89_02200 LI89_02205 SM00967 RNA 2'-O ribose methyltransferase substrate binding LI89_02295 SM01091 Transporter associated domain LI89_02325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_02325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_02390 SM00387 Histidine kinase-like ATPases LI89_02390 SM00388 His Kinase A (phosphoacceptor) domain LI89_02395 SM00448 cheY-homologous receiver domain LI89_02395 SM00862 Transcriptional regulatory protein, C terminal LI89_02410 SM01103 LI89_02410 LI89_02420 SM00382 ATPases associated with a variety of cellular activities LI89_02455 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_02455 SM00322 K homology RNA-binding domain LI89_02460 SM00173 Ras subfamily of RAS small GTPases LI89_02475 SM01387 LI89_02475 LI89_02480 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_02480 SM00322 K homology RNA-binding domain LI89_02485 SM00028 Tetratricopeptide repeats LI89_02490 SM00487 DEAD-like helicases superfamily LI89_02490 SM00490 helicase superfamily c-terminal domain LI89_02595 SM00382 ATPases associated with a variety of cellular activities LI89_02615 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_02625 SM00072 Guanylate kinase homologues. LI89_02635 SM00382 ATPases associated with a variety of cellular activities LI89_02640 SM00382 ATPases associated with a variety of cellular activities LI89_02665 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_02665 SM00866 LI89_02665 LI89_02710 SM00382 ATPases associated with a variety of cellular activities LI89_02715 SM00382 ATPases associated with a variety of cellular activities LI89_02885 SM00421 helix_turn_helix, Lux Regulon LI89_02920 SM01133 LI89_02920 LI89_02940 SM00382 ATPases associated with a variety of cellular activities LI89_03000 SM01120 LI89_03000 LI89_03045 SM00091 PAS domain LI89_03050 SM00354 helix_turn _helix lactose operon repressor LI89_03055 SM00640 Glycosyl hydrolases family 32 LI89_03085 SM00267 diguanylate cyclase LI89_03135 SM00749 bacterial OsmY and nodulation domain LI89_03160 SM01133 LI89_03160 LI89_03165 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain LI89_03190 SM00382 ATPases associated with a variety of cellular activities LI89_03210 SM00530 Helix-turn-helix XRE-family like proteins LI89_03215 SM00829 Enoylreductase LI89_03225 SM00382 ATPases associated with a variety of cellular activities LI89_03235 SM00267 diguanylate cyclase LI89_03245 SM00831 Cation transporter/ATPase, N-terminus LI89_03265 SM00855 Phosphoglycerate mutase family LI89_03270 SM00342 helix_turn_helix, arabinose operon control protein LI89_03270 SM00871 Bacterial transcription activator, effector binding domain LI89_03280 SM00448 cheY-homologous receiver domain LI89_03280 SM00862 Transcriptional regulatory protein, C terminal LI89_03315 SM00852 Probable molybdopterin binding domain LI89_03340 SM00271 DnaJ molecular chaperone homology domain LI89_03360 SM00904 Riboflavin kinase LI89_03390 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain LI89_03395 SM00851 MGS-like domain LI89_03395 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LI89_03430 SM00650 Ribosomal RNA adenine dimethylases LI89_03450 SM00271 DnaJ molecular chaperone homology domain LI89_03460 SM00634 Bacterial Ig-like domain (group 1) LI89_03465 SM00487 DEAD-like helicases superfamily LI89_03465 SM00490 helicase superfamily c-terminal domain LI89_03475 SM00486 DNA polymerase type-B family LI89_03485 SM00382 ATPases associated with a variety of cellular activities LI89_03555 SM01329 LI89_03555 LI89_03560 SM00917 LeuA allosteric (dimerisation) domain LI89_03585 SM00354 helix_turn _helix lactose operon repressor LI89_03660 SM00842 Cell division protein FtsA LI89_03665 SM00864 Tubulin/FtsZ family, GTPase domain LI89_03665 SM00865 Tubulin/FtsZ family, C-terminal domain LI89_03685 SM00957 SecA DEAD-like domain LI89_03685 SM00958 SecA preprotein cross-linking domain LI89_03710 SM01240 LI89_03710 LI89_03735 SM00644 LI89_03735 LI89_03750 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_03750 SM00895 LI89_03750 LI89_03775 SM00342 helix_turn_helix, arabinose operon control protein LI89_03855 SM00947 Carbonic anhydrase LI89_03860 SM00382 ATPases associated with a variety of cellular activities LI89_03920 SM00487 DEAD-like helicases superfamily LI89_03920 SM00490 helicase superfamily c-terminal domain LI89_03920 SM00847 Helicase associated domain (HA2) Add an annotation LI89_03930 SM00382 ATPases associated with a variety of cellular activities LI89_03975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_03980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_03985 SM00073 Histidine Phosphotransfer domain LI89_03985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_03985 SM00387 Histidine kinase-like ATPases LI89_03985 SM00388 His Kinase A (phosphoacceptor) domain LI89_03985 SM00448 cheY-homologous receiver domain LI89_03995 SM00954 Region found in RelA / SpoT proteins LI89_04010 SM01192 LI89_04010 LI89_04010 SM01193 LI89_04010 LI89_04105 SM00382 ATPases associated with a variety of cellular activities LI89_04115 SM00062 Bacterial periplasmic substrate-binding proteins LI89_04115 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_04150 SM00257 Lysin motif LI89_04160 SM00533 DNA-binding domain of DNA mismatch repair MUTS family LI89_04160 SM00534 ATPase domain of DNA mismatch repair MUTS family LI89_04230 SM00382 ATPases associated with a variety of cellular activities LI89_04240 SM00382 ATPases associated with a variety of cellular activities LI89_04250 SM00825 Beta-ketoacyl synthase LI89_04265 SM00822 LI89_04265 LI89_04270 SM00869 Autotransporter beta-domain LI89_04305 SM00062 Bacterial periplasmic substrate-binding proteins LI89_04320 SM00382 ATPases associated with a variety of cellular activities LI89_04335 SM00530 Helix-turn-helix XRE-family like proteins LI89_04345 SM00838 Elongation factor G C-terminus LI89_04345 SM00889 Elongation factor G, domain IV LI89_04350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_04390 SM01012 LI89_04390 LI89_04405 SM00382 ATPases associated with a variety of cellular activities LI89_04455 SM00382 ATPases associated with a variety of cellular activities LI89_04465 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_04465 SM01134 LI89_04465 LI89_04470 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_04475 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_04475 SM01134 LI89_04475 LI89_04500 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_04510 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_04550 SM00382 ATPases associated with a variety of cellular activities LI89_04565 SM00861 Transketolase, pyrimidine binding domain LI89_04595 SM00382 ATPases associated with a variety of cellular activities LI89_04605 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LI89_04655 SM01091 Transporter associated domain LI89_04665 SM00382 ATPases associated with a variety of cellular activities LI89_04665 SM00962 SRP54-type protein, GTPase domain LI89_04665 SM00963 SRP54-type protein, helical bundle domain LI89_04700 SM00448 cheY-homologous receiver domain LI89_04700 SM00850 LytTr DNA-binding domain LI89_04710 SM00830 Chorismate mutase type II LI89_04715 SM00830 Chorismate mutase type II LI89_04730 SM00363 S4 RNA-binding domain LI89_04740 SM00382 ATPases associated with a variety of cellular activities LI89_04740 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_04790 SM00155 Phospholipase D. Active site motifs. LI89_04795 SM00881 CoA binding domain LI89_04800 SM01144 LI89_04800 LI89_04810 SM00967 RNA 2'-O ribose methyltransferase substrate binding LI89_04830 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_04875 SM00062 Bacterial periplasmic substrate-binding proteins LI89_04890 SM00382 ATPases associated with a variety of cellular activities LI89_04915 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_04945 SM00710 Parallel beta-helix repeats LI89_04985 SM00900 LI89_04985 LI89_05065 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LI89_05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_05075 SM00866 LI89_05075 LI89_05095 SM01068 Putative carbohydrate binding domain LI89_05165 SM00448 cheY-homologous receiver domain LI89_05165 SM00862 Transcriptional regulatory protein, C terminal LI89_05170 SM00091 PAS domain LI89_05170 SM00387 Histidine kinase-like ATPases LI89_05170 SM00388 His Kinase A (phosphoacceptor) domain LI89_05190 SM00642 Alpha-amylase domain LI89_05230 SM01323 LI89_05230 LI89_05280 SM00861 Transketolase, pyrimidine binding domain LI89_05295 SM00981 LI89_05295 LI89_05380 SM00382 ATPases associated with a variety of cellular activities LI89_05380 SM00994 ClpX C4-type zinc finger LI89_05380 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_05385 SM00382 ATPases associated with a variety of cellular activities LI89_05385 SM00464 Found in ATP-dependent protease La (LON) LI89_05390 SM00411 bacterial (prokaryotic) histone like domain LI89_05405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_05435 SM00344 helix_turn_helix ASNC type LI89_05440 SM00382 ATPases associated with a variety of cellular activities LI89_05445 SM00382 ATPases associated with a variety of cellular activities LI89_05450 SM00938 Nitrogen regulatory protein P-II LI89_05500 SM00382 ATPases associated with a variety of cellular activities LI89_05595 SM00382 ATPases associated with a variety of cellular activities LI89_05605 SM00493 LI89_05605 LI89_05610 SM00387 Histidine kinase-like ATPases LI89_05705 SM00422 helix_turn_helix, mercury resistance LI89_05715 SM00244 prohibitin homologues LI89_05725 SM00822 LI89_05725 LI89_05735 SM00382 ATPases associated with a variety of cellular activities LI89_05750 SM01001 AIR carboxylase LI89_05765 SM00840 LI89_05765 LI89_05830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_05830 SM00387 Histidine kinase-like ATPases LI89_05830 SM00388 His Kinase A (phosphoacceptor) domain LI89_05835 SM00448 cheY-homologous receiver domain LI89_05835 SM00862 Transcriptional regulatory protein, C terminal LI89_05855 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LI89_05875 SM00382 ATPases associated with a variety of cellular activities LI89_05900 SM00421 helix_turn_helix, Lux Regulon LI89_05910 SM00357 Cold shock protein domain LI89_05920 SM00267 diguanylate cyclase LI89_05930 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_05945 SM00936 Penicillin-binding protein 5, C-terminal domain LI89_06000 SM00235 Zinc-dependent metalloprotease LI89_06005 SM00382 ATPases associated with a variety of cellular activities LI89_06020 SM00062 Bacterial periplasmic substrate-binding proteins LI89_06035 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_06035 SM01091 Transporter associated domain LI89_06050 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_06135 SM01081 Putative carbohydrate binding domain LI89_06150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_06185 SM00448 cheY-homologous receiver domain LI89_06185 SM00862 Transcriptional regulatory protein, C terminal LI89_06190 SM00387 Histidine kinase-like ATPases LI89_06190 SM00388 His Kinase A (phosphoacceptor) domain LI89_06260 SM00796 Allophanate hydrolase subunit 1 LI89_06265 SM00797 Allophanate hydrolase subunit 2 LI89_06315 SM00861 Transketolase, pyrimidine binding domain LI89_06330 SM00881 CoA binding domain LI89_06435 SM00855 Phosphoglycerate mutase family LI89_06440 SM00477 DNA/RNA non-specific endonuclease LI89_06440 SM00892 DNA/RNA non-specific endonuclease LI89_06475 SM00382 ATPases associated with a variety of cellular activities LI89_06500 SM00382 ATPases associated with a variety of cellular activities LI89_06520 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_06520 SM00876 Biotin and Thiamin Synthesis associated domain LI89_06540 SM00382 ATPases associated with a variety of cellular activities LI89_06545 SM00487 DEAD-like helicases superfamily LI89_06545 SM00490 helicase superfamily c-terminal domain LI89_06560 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_06595 SM00382 ATPases associated with a variety of cellular activities LI89_06610 SM00487 DEAD-like helicases superfamily LI89_06610 SM00490 helicase superfamily c-terminal domain LI89_06645 SM01118 LI89_06645 LI89_06650 SM00507 HNH nucleases LI89_06665 SM00382 ATPases associated with a variety of cellular activities LI89_06710 SM00382 ATPases associated with a variety of cellular activities LI89_06715 SM00450 Rhodanese Homology Domain LI89_06745 SM00382 ATPases associated with a variety of cellular activities LI89_06790 SM00487 DEAD-like helicases superfamily LI89_06790 SM00488 LI89_06790 LI89_06790 SM00491 LI89_06790 LI89_06815 SM00903 Flavin reductase like domain LI89_06825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_06825 SM00091 PAS domain LI89_06825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_06830 SM00382 ATPases associated with a variety of cellular activities LI89_06840 SM00062 Bacterial periplasmic substrate-binding proteins LI89_06840 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_06870 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. LI89_06915 SM00382 ATPases associated with a variety of cellular activities LI89_06925 SM00852 Probable molybdopterin binding domain LI89_06940 SM00382 ATPases associated with a variety of cellular activities LI89_06965 SM00829 Enoylreductase LI89_06990 SM00354 helix_turn _helix lactose operon repressor LI89_07000 SM00382 ATPases associated with a variety of cellular activities LI89_07020 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_07100 SM00919 Malic enzyme, NAD binding domain LI89_07100 SM01274 LI89_07100 LI89_07175 SM01091 Transporter associated domain LI89_07190 SM01350 LI89_07190 LI89_07245 SM00382 ATPases associated with a variety of cellular activities LI89_07305 SM00382 ATPases associated with a variety of cellular activities LI89_07350 SM00877 LI89_07350 LI89_07355 SM00877 LI89_07355 LI89_07395 SM00877 LI89_07395 LI89_07400 SM00877 LI89_07400 LI89_07430 SM00877 LI89_07430 LI89_07435 SM00877 LI89_07435 LI89_07445 SM00342 helix_turn_helix, arabinose operon control protein LI89_07525 SM00382 ATPases associated with a variety of cellular activities LI89_07545 SM00855 Phosphoglycerate mutase family LI89_07575 SM00421 helix_turn_helix, Lux Regulon LI89_07620 SM00382 ATPases associated with a variety of cellular activities LI89_07620 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_07730 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_07730 SM01134 LI89_07730 LI89_07740 SM00260 Two component signalling adaptor domain LI89_07740 SM00448 cheY-homologous receiver domain LI89_07760 SM00382 ATPases associated with a variety of cellular activities LI89_07790 SM00829 Enoylreductase LI89_07795 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_07840 SM00062 Bacterial periplasmic substrate-binding proteins LI89_07840 SM00387 Histidine kinase-like ATPases LI89_07840 SM00388 His Kinase A (phosphoacceptor) domain LI89_07840 SM00448 cheY-homologous receiver domain LI89_07845 SM00421 helix_turn_helix, Lux Regulon LI89_07845 SM00448 cheY-homologous receiver domain LI89_07880 SM00530 Helix-turn-helix XRE-family like proteins LI89_07910 SM00382 ATPases associated with a variety of cellular activities LI89_07930 SM00387 Histidine kinase-like ATPases LI89_07935 SM00421 helix_turn_helix, Lux Regulon LI89_07935 SM00448 cheY-homologous receiver domain LI89_07940 SM00448 cheY-homologous receiver domain LI89_07945 SM00091 PAS domain LI89_07945 SM00387 Histidine kinase-like ATPases LI89_07950 SM00764 Citrate lyase ligase C-terminal domain LI89_08045 SM00382 ATPases associated with a variety of cellular activities LI89_08075 SM00382 ATPases associated with a variety of cellular activities LI89_08155 SM00344 helix_turn_helix ASNC type LI89_08165 SM00829 Enoylreductase LI89_08170 SM01038 Beta galactosidase small chain LI89_08175 SM00354 helix_turn _helix lactose operon repressor LI89_08180 SM00357 Cold shock protein domain LI89_08195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_08195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_08210 SM00831 Cation transporter/ATPase, N-terminus LI89_08215 SM00829 Enoylreductase LI89_08245 SM00073 Histidine Phosphotransfer domain LI89_08245 SM00260 Two component signalling adaptor domain LI89_08245 SM00387 Histidine kinase-like ATPases LI89_08245 SM01231 LI89_08245 LI89_08250 SM00260 Two component signalling adaptor domain LI89_08255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_08255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_08255 SM00319 Homologues of the ligand binding domain of Tar LI89_08260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_08260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_08260 SM00319 Homologues of the ligand binding domain of Tar LI89_08265 SM00138 Methyltransferase, chemotaxis proteins LI89_08270 SM00448 cheY-homologous receiver domain LI89_08275 SM00448 cheY-homologous receiver domain LI89_08305 SM00634 Bacterial Ig-like domain (group 1) LI89_08320 SM00858 LI89_08320 LI89_08365 SM00047 Lysozyme subfamily 2 LI89_08430 SM00382 ATPases associated with a variety of cellular activities LI89_08455 SM00478 endonuclease III LI89_08460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_08465 SM00342 helix_turn_helix, arabinose operon control protein LI89_08525 SM00062 Bacterial periplasmic substrate-binding proteins LI89_08525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_08535 SM00382 ATPases associated with a variety of cellular activities LI89_08580 SM00530 Helix-turn-helix XRE-family like proteins LI89_08585 SM00612 LI89_08585 LI89_08595 SM00903 Flavin reductase like domain LI89_08665 SM00642 Alpha-amylase domain LI89_08685 SM00421 helix_turn_helix, Lux Regulon LI89_08685 SM00448 cheY-homologous receiver domain LI89_08690 SM00465 GIY-YIG type nucleases (URI domain) LI89_08980 SM00530 Helix-turn-helix XRE-family like proteins LI89_09005 SM00382 ATPases associated with a variety of cellular activities LI89_09145 SM00635 Bacterial Ig-like domain 2 LI89_09210 SM00060 Fibronectin type 3 domain LI89_09235 SM00869 Autotransporter beta-domain LI89_09240 SM00857 Resolvase, N terminal domain LI89_09300 SM00448 cheY-homologous receiver domain LI89_09305 SM00387 Histidine kinase-like ATPases LI89_09310 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_09310 SM01134 LI89_09310 LI89_09320 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_09370 SM00382 ATPases associated with a variety of cellular activities LI89_09465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_09465 SM00387 Histidine kinase-like ATPases LI89_09485 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_09530 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_09530 SM00866 LI89_09530 LI89_09560 SM00257 Lysin motif LI89_09600 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_09600 SM01134 LI89_09600 LI89_09615 SM00363 S4 RNA-binding domain LI89_09665 SM01022 LI89_09665 LI89_09675 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_09675 SM00091 PAS domain LI89_09675 SM00267 diguanylate cyclase LI89_09680 SM00972 Spore Coat Protein U domain LI89_09695 SM00972 Spore Coat Protein U domain LI89_09700 SM00972 Spore Coat Protein U domain LI89_09705 SM00972 Spore Coat Protein U domain LI89_09730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_09735 SM00945 ProQ/FINO family LI89_09740 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_09740 SM00245 tail specific protease LI89_09780 SM00346 helix_turn_helix isocitrate lyase regulation LI89_09785 SM00644 LI89_09785 LI89_09810 SM00382 ATPases associated with a variety of cellular activities LI89_09895 SM00382 ATPases associated with a variety of cellular activities LI89_09950 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain LI89_09975 SM00873 B3/4 domain LI89_09975 SM00874 tRNA synthetase B5 domain LI89_09975 SM00896 Ferredoxin-fold anticodon binding domain LI89_09980 SM00411 bacterial (prokaryotic) histone like domain LI89_10005 SM00382 ATPases associated with a variety of cellular activities LI89_10120 SM00382 ATPases associated with a variety of cellular activities LI89_10195 SM00354 helix_turn _helix lactose operon repressor LI89_10220 SM00479 LI89_10220 LI89_10270 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_10295 SM00363 S4 RNA-binding domain LI89_10350 SM00382 ATPases associated with a variety of cellular activities LI89_10355 SM00382 ATPases associated with a variety of cellular activities LI89_10385 SM00382 ATPases associated with a variety of cellular activities LI89_10420 SM00953 LI89_10420 LI89_10430 SM00091 PAS domain LI89_10430 SM00382 ATPases associated with a variety of cellular activities LI89_10440 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_10475 SM01061 CAT RNA binding domain LI89_10490 SM00890 Domain of unknown function LI89_10555 SM00382 ATPases associated with a variety of cellular activities LI89_10555 SM00487 DEAD-like helicases superfamily LI89_10555 SM00490 helicase superfamily c-terminal domain LI89_10555 SM00847 Helicase associated domain (HA2) Add an annotation LI89_10565 SM00530 Helix-turn-helix XRE-family like proteins LI89_10570 SM00020 Trypsin-like serine protease LI89_10590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_10590 SM00387 Histidine kinase-like ATPases LI89_10590 SM00388 His Kinase A (phosphoacceptor) domain LI89_10595 SM00448 cheY-homologous receiver domain LI89_10595 SM00862 Transcriptional regulatory protein, C terminal LI89_10620 SM01002 Alanine dehydrogenase/PNT, C-terminal domain LI89_10620 SM01003 Alanine dehydrogenase/PNT, N-terminal domain LI89_10635 SM00100 Cyclic nucleotide-monophosphate binding domain LI89_10635 SM00419 helix_turn_helix, cAMP Regulatory protein LI89_10655 SM00871 Bacterial transcription activator, effector binding domain LI89_10665 SM00822 LI89_10665 LI89_10670 SM00098 Alkaline phosphatase homologues LI89_10740 SM00354 helix_turn _helix lactose operon repressor LI89_10770 SM00062 Bacterial periplasmic substrate-binding proteins LI89_10785 SM00344 helix_turn_helix ASNC type LI89_10800 SM00849 Metallo-beta-lactamase superfamily LI89_10805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_10805 SM00382 ATPases associated with a variety of cellular activities LI89_10810 SM00347 helix_turn_helix multiple antibiotic resistance protein LI89_10845 SM00421 helix_turn_helix, Lux Regulon LI89_10940 SM00421 helix_turn_helix, Lux Regulon LI89_10965 SM00354 helix_turn _helix lactose operon repressor LI89_10995 SM00342 helix_turn_helix, arabinose operon control protein LI89_11005 SM00382 ATPases associated with a variety of cellular activities LI89_11025 SM00382 ATPases associated with a variety of cellular activities LI89_11075 SM00342 helix_turn_helix, arabinose operon control protein LI89_11085 SM00900 LI89_11085 LI89_11095 SM00478 endonuclease III LI89_11095 SM00525 LI89_11095 LI89_11115 SM00357 Cold shock protein domain LI89_11115 SM00955 LI89_11115 LI89_11135 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_11135 SM01134 LI89_11135 LI89_11145 SM01007 Class II Aldolase and Adducin N-terminal domain LI89_11160 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family LI89_11180 SM00530 Helix-turn-helix XRE-family like proteins LI89_11190 SM00028 Tetratricopeptide repeats LI89_11200 SM00014 Acid phosphatase homologues LI89_11290 SM00857 Resolvase, N terminal domain LI89_11305 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LI89_11305 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LI89_11305 SM00493 LI89_11305 LI89_11320 SM00822 LI89_11320 LI89_11335 SM00363 S4 RNA-binding domain LI89_11345 SM00481 DNA polymerase alpha chain like domain LI89_11380 SM00749 bacterial OsmY and nodulation domain LI89_11430 SM00052 Putative diguanylate phosphodiesterase LI89_11435 SM00155 Phospholipase D. Active site motifs. LI89_11445 SM00382 ATPases associated with a variety of cellular activities LI89_11450 SM00382 ATPases associated with a variety of cellular activities LI89_11495 SM00528 Domain in histone-like proteins of HNS family LI89_11500 SM00984 UDP binding domain LI89_11505 SM00448 cheY-homologous receiver domain LI89_11565 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain LI89_11565 SM00437 Bacterial DNA topoisomerase I DNA-binding domain LI89_11565 SM00493 LI89_11565 LI89_11585 SM00870 LI89_11585 LI89_11605 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_11620 SM00763 PrkA AAA domain LI89_11650 SM00052 Putative diguanylate phosphodiesterase LI89_11650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_11650 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_11650 SM00091 PAS domain LI89_11650 SM00267 diguanylate cyclase LI89_11660 SM01005 Alanine racemase, C-terminal domain LI89_11675 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_11740 SM00341 Helicase and RNase D C-terminal LI89_11740 SM00474 3'-5' exonuclease LI89_11760 SM00487 DEAD-like helicases superfamily LI89_11760 SM00491 LI89_11760 LI89_11805 SM00257 Lysin motif LI89_11815 SM00382 ATPases associated with a variety of cellular activities LI89_11830 SM00382 ATPases associated with a variety of cellular activities LI89_11835 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_11895 SM00836 DALR anticodon binding domain LI89_11895 SM01016 Arginyl tRNA synthetase N terminal dom LI89_11960 SM00481 DNA polymerase alpha chain like domain LI89_11985 SM00267 diguanylate cyclase LI89_12015 SM00937 LI89_12015 LI89_12035 SM01400 LI89_12035 LI89_12075 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_12090 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_12090 SM00895 LI89_12090 LI89_12145 SM00530 Helix-turn-helix XRE-family like proteins LI89_12150 SM00382 ATPases associated with a variety of cellular activities LI89_12350 SM00479 LI89_12350 LI89_12365 SM01022 LI89_12365 LI89_12375 SM00487 DEAD-like helicases superfamily LI89_12375 SM00490 helicase superfamily c-terminal domain LI89_12405 SM01091 Transporter associated domain LI89_12440 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_12440 SM00091 PAS domain LI89_12440 SM00267 diguanylate cyclase LI89_12465 SM00357 Cold shock protein domain LI89_12515 SM00342 helix_turn_helix, arabinose operon control protein LI89_12540 SM00382 ATPases associated with a variety of cellular activities LI89_12545 SM00090 RIO-like kinase LI89_12560 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_12560 SM00091 PAS domain LI89_12560 SM00267 diguanylate cyclase LI89_12580 SM00342 helix_turn_helix, arabinose operon control protein LI89_12595 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_12600 SM00895 LI89_12600 LI89_12605 SM00829 Enoylreductase LI89_12615 SM00858 LI89_12615 LI89_12620 SM00382 ATPases associated with a variety of cellular activities LI89_12640 SM00062 Bacterial periplasmic substrate-binding proteins LI89_12720 SM00354 helix_turn _helix lactose operon repressor LI89_12725 SM00640 Glycosyl hydrolases family 32 LI89_12760 SM01329 LI89_12760 LI89_12795 SM00448 cheY-homologous receiver domain LI89_12795 SM00862 Transcriptional regulatory protein, C terminal LI89_12800 SM00387 Histidine kinase-like ATPases LI89_12800 SM00388 His Kinase A (phosphoacceptor) domain LI89_12805 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. LI89_12835 SM00382 ATPases associated with a variety of cellular activities LI89_12845 SM00487 DEAD-like helicases superfamily LI89_12845 SM00490 helicase superfamily c-terminal domain LI89_12845 SM00982 LI89_12845 LI89_12845 SM01058 CarD-like/TRCF domain LI89_12930 SM00825 Beta-ketoacyl synthase LI89_12940 SM00822 LI89_12940 LI89_12945 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. LI89_12975 SM00363 S4 RNA-binding domain LI89_12980 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_13010 SM00421 helix_turn_helix, Lux Regulon LI89_13020 SM00450 Rhodanese Homology Domain LI89_13030 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_13045 SM00387 Histidine kinase-like ATPases LI89_13050 SM00421 helix_turn_helix, Lux Regulon LI89_13050 SM00448 cheY-homologous receiver domain LI89_13105 SM01091 Transporter associated domain LI89_13120 SM00421 helix_turn_helix, Lux Regulon LI89_13195 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase LI89_13200 SM00992 Hemimethylated DNA-binding protein YccV like LI89_13205 SM00881 CoA binding domain LI89_13215 SM00851 MGS-like domain LI89_13270 SM00825 Beta-ketoacyl synthase LI89_13290 SM00382 ATPases associated with a variety of cellular activities LI89_13295 SM00981 LI89_13295 LI89_13340 SM00052 Putative diguanylate phosphodiesterase LI89_13345 SM00849 Metallo-beta-lactamase superfamily LI89_13400 SM00357 Cold shock protein domain LI89_13405 SM00357 Cold shock protein domain LI89_13410 SM01150 LI89_13410 LI89_13420 SM00382 ATPases associated with a variety of cellular activities LI89_13425 SM00849 Metallo-beta-lactamase superfamily LI89_13430 SM00411 bacterial (prokaryotic) histone like domain LI89_13435 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_13460 SM00870 LI89_13460 LI89_13495 SM00382 ATPases associated with a variety of cellular activities LI89_13505 SM00843 LI89_13505 LI89_13510 SM00344 helix_turn_helix ASNC type LI89_13520 SM00382 ATPases associated with a variety of cellular activities LI89_13525 SM00382 ATPases associated with a variety of cellular activities LI89_13535 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_13540 SM00382 ATPases associated with a variety of cellular activities LI89_13540 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_13550 SM00357 Cold shock protein domain LI89_13555 SM00382 ATPases associated with a variety of cellular activities LI89_13620 SM00382 ATPases associated with a variety of cellular activities LI89_13625 SM00062 Bacterial periplasmic substrate-binding proteins LI89_13625 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_13650 SM00062 Bacterial periplasmic substrate-binding proteins LI89_13650 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. LI89_13675 SM00382 ATPases associated with a variety of cellular activities LI89_13710 SM00014 Acid phosphatase homologues LI89_13715 SM01133 LI89_13715 LI89_13720 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_13720 SM01134 LI89_13720 LI89_13735 SM00936 Penicillin-binding protein 5, C-terminal domain LI89_13740 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_13750 SM00530 Helix-turn-helix XRE-family like proteins LI89_13765 SM00382 ATPases associated with a variety of cellular activities LI89_13765 SM00930 LI89_13765 LI89_13795 SM00382 ATPases associated with a variety of cellular activities LI89_13825 SM00518 AP endonuclease family 2 LI89_13850 SM00862 Transcriptional regulatory protein, C terminal LI89_13895 SM00841 Elongation factor P, C-terminal LI89_13895 SM01185 LI89_13895 LI89_13915 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_13915 SM00895 LI89_13915 LI89_13925 SM00833 Cobalamin synthesis protein cobW C-terminal domain LI89_13930 SM00014 Acid phosphatase homologues LI89_13945 SM00052 Putative diguanylate phosphodiesterase LI89_13965 SM00382 ATPases associated with a variety of cellular activities LI89_13980 SM00363 S4 RNA-binding domain LI89_13985 SM00487 DEAD-like helicases superfamily LI89_13985 SM00490 helicase superfamily c-terminal domain LI89_14020 SM01057 Eukaryotic-type carbonic anhydrase LI89_14050 SM00530 Helix-turn-helix XRE-family like proteins LI89_14065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_14065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_14110 SM00382 ATPases associated with a variety of cellular activities LI89_14120 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins LI89_14130 SM00387 Histidine kinase-like ATPases LI89_14130 SM00388 His Kinase A (phosphoacceptor) domain LI89_14135 SM00421 helix_turn_helix, Lux Regulon LI89_14135 SM00448 cheY-homologous receiver domain LI89_14140 SM00387 Histidine kinase-like ATPases LI89_14140 SM00388 His Kinase A (phosphoacceptor) domain LI89_14140 SM00448 cheY-homologous receiver domain LI89_14145 SM00434 DNA Topoisomerase IV LI89_14185 SM00852 Probable molybdopterin binding domain LI89_14200 SM01060 LI89_14200 LI89_14215 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain LI89_14265 SM00354 helix_turn _helix lactose operon repressor LI89_14340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_14340 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LI89_14345 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LI89_14390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_14430 SM00354 helix_turn _helix lactose operon repressor LI89_14460 SM00052 Putative diguanylate phosphodiesterase LI89_14470 SM00382 ATPases associated with a variety of cellular activities LI89_14485 SM00062 Bacterial periplasmic substrate-binding proteins LI89_14540 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_14550 SM00342 helix_turn_helix, arabinose operon control protein LI89_14570 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_14610 SM00354 helix_turn _helix lactose operon repressor LI89_14645 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_14645 SM00091 PAS domain LI89_14645 SM00267 diguanylate cyclase LI89_14650 SM00825 Beta-ketoacyl synthase LI89_14695 SM00463 Small MutS-related domain LI89_14785 SM00382 ATPases associated with a variety of cellular activities LI89_14830 SM00342 helix_turn_helix, arabinose operon control protein LI89_14835 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_14840 SM00421 helix_turn_helix, Lux Regulon LI89_15025 SM00354 helix_turn _helix lactose operon repressor LI89_15030 SM00867 YceI-like domain LI89_15045 SM00422 helix_turn_helix, mercury resistance LI89_15060 SM00382 ATPases associated with a variety of cellular activities LI89_15105 SM00382 ATPases associated with a variety of cellular activities LI89_15130 SM01061 CAT RNA binding domain LI89_15165 SM00387 Histidine kinase-like ATPases LI89_15170 SM00448 cheY-homologous receiver domain LI89_15170 SM00850 LytTr DNA-binding domain LI89_15275 SM00278 Helix-hairpin-helix DNA-binding motif class 1 LI89_15275 SM00292 breast cancer carboxy-terminal domain LI89_15275 SM00532 Ligase N family LI89_15280 SM00771 ZipA, C-terminal domain (FtsZ-binding) LI89_15310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_15310 SM00387 Histidine kinase-like ATPases LI89_15310 SM00388 His Kinase A (phosphoacceptor) domain LI89_15315 SM00448 cheY-homologous receiver domain LI89_15315 SM00862 Transcriptional regulatory protein, C terminal LI89_15325 SM00382 ATPases associated with a variety of cellular activities LI89_15335 SM00382 ATPases associated with a variety of cellular activities LI89_15380 SM01130 LI89_15380 LI89_15430 SM00421 helix_turn_helix, Lux Regulon LI89_15435 SM00919 Malic enzyme, NAD binding domain LI89_15435 SM01274 LI89_15435 LI89_15460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_15475 SM00421 helix_turn_helix, Lux Regulon LI89_15475 SM00448 cheY-homologous receiver domain LI89_15560 SM00060 Fibronectin type 3 domain LI89_15680 SM00857 Resolvase, N terminal domain LI89_15735 SM01130 LI89_15735 LI89_15805 SM00382 ATPases associated with a variety of cellular activities LI89_15835 SM00924 MgtE intracellular N domain LI89_15840 SM00052 Putative diguanylate phosphodiesterase LI89_15840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) LI89_15840 SM00091 PAS domain LI89_15840 SM00267 diguanylate cyclase LI89_15875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_15875 SM00387 Histidine kinase-like ATPases LI89_15875 SM00388 His Kinase A (phosphoacceptor) domain LI89_15880 SM00448 cheY-homologous receiver domain LI89_15880 SM00862 Transcriptional regulatory protein, C terminal LI89_15890 SM00530 Helix-turn-helix XRE-family like proteins LI89_15905 SM00046 Diacylglycerol kinase catalytic domain (presumed) LI89_15935 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_15935 SM01134 LI89_15935 LI89_15940 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_15995 SM00116 Domain in cystathionine beta-synthase and other proteins. LI89_15995 SM01240 LI89_15995 LI89_16025 SM00564 beta-propeller repeat LI89_16045 SM00530 Helix-turn-helix XRE-family like proteins LI89_16050 SM00028 Tetratricopeptide repeats LI89_16065 SM00562 LI89_16065 LI89_16070 SM00247 Beta/gamma crystallins LI89_16080 SM01359 LI89_16080 LI89_16080 SM01360 LI89_16080 LI89_16085 SM00869 Autotransporter beta-domain LI89_16090 SM00869 Autotransporter beta-domain LI89_16120 SM00271 DnaJ molecular chaperone homology domain LI89_16215 SM00938 Nitrogen regulatory protein P-II LI89_16225 SM00382 ATPases associated with a variety of cellular activities LI89_16225 SM00448 cheY-homologous receiver domain LI89_16235 SM00387 Histidine kinase-like ATPases LI89_16235 SM00388 His Kinase A (phosphoacceptor) domain LI89_16245 SM01211 LI89_16245 LI89_16250 SM00062 Bacterial periplasmic substrate-binding proteins LI89_16310 SM00358 Double-stranded RNA binding motif LI89_16310 SM00535 Ribonuclease III family LI89_16365 SM00487 DEAD-like helicases superfamily LI89_16365 SM00490 helicase superfamily c-terminal domain LI89_16370 SM00248 ankyrin repeats LI89_16385 SM00986 Uracil DNA glycosylase superfamily LI89_16385 SM00987 UreE urease accessory protein, C-terminal domain LI89_16475 SM00778 Zinc-binding domain of primase-helicase LI89_16500 SM00342 helix_turn_helix, arabinose operon control protein LI89_16545 SM00829 Enoylreductase LI89_16590 SM00342 helix_turn_helix, arabinose operon control protein LI89_16635 SM00342 helix_turn_helix, arabinose operon control protein LI89_16710 SM00988 UreE urease accessory protein, N-terminal domain LI89_16740 SM00382 ATPases associated with a variety of cellular activities LI89_16745 SM00382 ATPases associated with a variety of cellular activities LI89_16775 SM00450 Rhodanese Homology Domain LI89_16780 SM00342 helix_turn_helix, arabinose operon control protein LI89_16785 SM00357 Cold shock protein domain LI89_16810 SM00342 helix_turn_helix, arabinose operon control protein LI89_16835 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_16865 SM00382 ATPases associated with a variety of cellular activities LI89_16885 SM00479 LI89_16885 LI89_16900 SM00849 Metallo-beta-lactamase superfamily LI89_16905 SM00257 Lysin motif LI89_16930 SM00825 Beta-ketoacyl synthase LI89_16935 SM00822 LI89_16935 LI89_16945 SM00825 Beta-ketoacyl synthase LI89_17000 SM00563 Phosphate acyltransferases LI89_17050 SM00382 ATPases associated with a variety of cellular activities LI89_17050 SM00930 LI89_17050 LI89_17095 SM01322 LI89_17095 LI89_17115 SM00977 TilS substrate C-terminal domain LI89_17135 SM00481 DNA polymerase alpha chain like domain LI89_17165 SM00935 Outer membrane protein (OmpH-like) LI89_17175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_17225 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_17275 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs LI89_17275 SM00475 5'-3' exonuclease LI89_17315 SM00925 MltA specific insert domain LI89_17335 SM00646 LI89_17335 LI89_17345 SM00382 ATPases associated with a variety of cellular activities LI89_17395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. LI89_17410 SM00927 DNA mismatch repair enzyme MutH LI89_17430 SM00563 Phosphate acyltransferases LI89_17440 SM00354 helix_turn _helix lactose operon repressor LI89_17465 SM00849 Metallo-beta-lactamase superfamily LI89_17475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_17475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_17475 SM00319 Homologues of the ligand binding domain of Tar LI89_17485 SM00862 Transcriptional regulatory protein, C terminal LI89_17535 SM00382 ATPases associated with a variety of cellular activities LI89_17555 SM00947 Carbonic anhydrase LI89_17565 SM00822 LI89_17565 LI89_17575 SM00271 DnaJ molecular chaperone homology domain LI89_17580 SM00354 helix_turn _helix lactose operon repressor LI89_17600 SM00344 helix_turn_helix ASNC type LI89_17605 SM00091 PAS domain LI89_17605 SM00267 diguanylate cyclase LI89_17625 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_17685 SM00778 Zinc-binding domain of primase-helicase LI89_17770 SM00937 LI89_17770 LI89_17800 SM00387 Histidine kinase-like ATPases LI89_17800 SM00388 His Kinase A (phosphoacceptor) domain LI89_17805 SM00448 cheY-homologous receiver domain LI89_17805 SM00862 Transcriptional regulatory protein, C terminal LI89_17835 SM00822 LI89_17835 LI89_17875 SM01011 Aminopeptidase P, N-terminal domain LI89_17935 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LI89_17940 SM00861 Transketolase, pyrimidine binding domain LI89_17980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor LI89_17985 SM00731 SprT homologues. LI89_18010 SM00732 Likely ribonuclease with RNase H fold. LI89_18045 SM01152 LI89_18045 LI89_18055 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_18080 SM00478 endonuclease III LI89_18080 SM00525 LI89_18080 LI89_18115 SM00448 cheY-homologous receiver domain LI89_18115 SM00862 Transcriptional regulatory protein, C terminal LI89_18125 SM00387 Histidine kinase-like ATPases LI89_18125 SM00388 His Kinase A (phosphoacceptor) domain LI89_18130 SM00421 helix_turn_helix, Lux Regulon LI89_18195 SM00382 ATPases associated with a variety of cellular activities LI89_18230 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_18245 SM00354 helix_turn _helix lactose operon repressor LI89_18280 SM00421 helix_turn_helix, Lux Regulon LI89_18295 SM00052 Putative diguanylate phosphodiesterase LI89_18295 SM00091 PAS domain LI89_18295 SM00267 diguanylate cyclase LI89_18400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_18430 SM00382 ATPases associated with a variety of cellular activities LI89_18565 SM00342 helix_turn_helix, arabinose operon control protein LI89_18580 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_18595 SM00563 Phosphate acyltransferases LI89_18600 SM00434 DNA Topoisomerase IV LI89_18620 SM00387 Histidine kinase-like ATPases LI89_18620 SM00433 TopoisomeraseII LI89_18690 SM01118 LI89_18690 LI89_18695 SM00287 Bacterial SH3 domain homologues LI89_18700 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. LI89_18710 SM00905 Dihydroneopterin aldolase LI89_18715 SM01207 LI89_18715 LI89_18730 SM00400 zinc finger LI89_18730 SM00493 LI89_18730 LI89_18730 SM00766 DNA primase DnaG DnaB-binding LI89_18810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_18860 SM00382 ATPases associated with a variety of cellular activities LI89_18870 SM00382 ATPases associated with a variety of cellular activities LI89_18870 SM01086 C-terminal, D2-small domain, of ClpB protein LI89_19025 SM00869 Autotransporter beta-domain LI89_19055 SM00858 LI89_19055 LI89_19075 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_19075 SM00895 LI89_19075 LI89_19135 SM00829 Enoylreductase LI89_19150 SM00530 Helix-turn-helix XRE-family like proteins LI89_19170 SM00857 Resolvase, N terminal domain LI89_19225 SM00749 bacterial OsmY and nodulation domain LI89_19240 SM00073 Histidine Phosphotransfer domain LI89_19240 SM00091 PAS domain LI89_19240 SM00387 Histidine kinase-like ATPases LI89_19240 SM00388 His Kinase A (phosphoacceptor) domain LI89_19240 SM00448 cheY-homologous receiver domain LI89_19245 SM00729 Elongator protein 3, MiaB family, Radical SAM LI89_19300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_19305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. LI89_19340 SM00382 ATPases associated with a variety of cellular activities LI89_19370 SM00382 ATPases associated with a variety of cellular activities LI89_19435 SM00460 Transglutaminase/protease-like homologues LI89_19450 SM00642 Alpha-amylase domain LI89_19460 SM00354 helix_turn _helix lactose operon repressor LI89_19465 SM00831 Cation transporter/ATPase, N-terminus LI89_19475 SM00530 Helix-turn-helix XRE-family like proteins LI89_19640 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_19665 SM00052 Putative diguanylate phosphodiesterase LI89_19665 SM00267 diguanylate cyclase LI89_19670 SM00829 Enoylreductase LI89_19695 SM00878 Biotin carboxylase C-terminal domain LI89_19750 SM00507 HNH nucleases LI89_19785 SM00778 Zinc-binding domain of primase-helicase LI89_19785 SM00885 D5 N terminal like LI89_19840 SM00267 diguanylate cyclase LI89_19850 SM00357 Cold shock protein domain LI89_19855 SM00357 Cold shock protein domain LI89_19860 SM00357 Cold shock protein domain LI89_19880 SM00062 Bacterial periplasmic substrate-binding proteins LI89_19895 SM00382 ATPases associated with a variety of cellular activities LI89_19950 SM01005 Alanine racemase, C-terminal domain LI89_19955 SM00382 ATPases associated with a variety of cellular activities LI89_19960 SM00829 Enoylreductase LI89_20000 SM00563 Phosphate acyltransferases LI89_20025 SM00382 ATPases associated with a variety of cellular activities LI89_20070 SM00912 haemagglutination activity domain LI89_20075 SM01018 B12 binding domain LI89_20080 SM00346 helix_turn_helix isocitrate lyase regulation LI89_20190 SM00422 helix_turn_helix, mercury resistance LI89_20205 SM00662 RNA polymerases D LI89_20210 SM00363 S4 RNA-binding domain LI89_20210 SM01390 LI89_20210 LI89_20275 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. LI89_20280 SM01374 LI89_20280 LI89_20300 SM00322 K homology RNA-binding domain LI89_20315 SM01382 LI89_20315 LI89_20315 SM01383 LI89_20315 LI89_20335 SM01403 LI89_20335 LI89_20355 SM00838 Elongation factor G C-terminus LI89_20355 SM00889 Elongation factor G, domain IV LI89_20420 SM00382 ATPases associated with a variety of cellular activities LI89_20445 SM00382 ATPases associated with a variety of cellular activities LI89_20450 SM00062 Bacterial periplasmic substrate-binding proteins LI89_20485 SM00100 Cyclic nucleotide-monophosphate binding domain LI89_20485 SM00419 helix_turn_helix, cAMP Regulatory protein LI89_20520 SM00354 helix_turn _helix lactose operon repressor LI89_20635 SM00363 S4 RNA-binding domain LI89_20650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_20650 SM00387 Histidine kinase-like ATPases LI89_20650 SM00388 His Kinase A (phosphoacceptor) domain LI89_20655 SM00448 cheY-homologous receiver domain LI89_20655 SM00862 Transcriptional regulatory protein, C terminal LI89_20665 SM00316 Ribosomal protein S1-like RNA-binding domain LI89_20665 SM00732 Likely ribonuclease with RNase H fold. LI89_20670 SM00899 LI89_20670 LI89_20715 SM00421 helix_turn_helix, Lux Regulon LI89_20725 SM00450 Rhodanese Homology Domain LI89_20735 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_20735 SM01134 LI89_20735 LI89_20765 SM00642 Alpha-amylase domain LI89_20770 SM00642 Alpha-amylase domain LI89_20795 SM00859 Semialdehyde dehydrogenase, NAD binding domain LI89_20815 SM00354 helix_turn _helix lactose operon repressor LI89_20975 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LI89_20980 SM00235 Zinc-dependent metalloprotease LI89_21105 SM00530 Helix-turn-helix XRE-family like proteins LI89_21110 SM00829 Enoylreductase LI89_21115 SM00869 Autotransporter beta-domain LI89_21135 SM00052 Putative diguanylate phosphodiesterase LI89_21175 SM00052 Putative diguanylate phosphodiesterase LI89_21180 SM00028 Tetratricopeptide repeats LI89_21230 SM00382 ATPases associated with a variety of cellular activities LI89_21235 SM00382 ATPases associated with a variety of cellular activities LI89_21255 SM00912 haemagglutination activity domain LI89_21265 SM00912 haemagglutination activity domain LI89_21280 SM00387 Histidine kinase-like ATPases LI89_21285 SM00421 helix_turn_helix, Lux Regulon LI89_21285 SM00448 cheY-homologous receiver domain LI89_21400 SM00354 helix_turn _helix lactose operon repressor LI89_21410 SM00778 Zinc-binding domain of primase-helicase LI89_21410 SM00885 D5 N terminal like LI89_21460 SM00342 helix_turn_helix, arabinose operon control protein LI89_21470 SM00382 ATPases associated with a variety of cellular activities LI89_21505 SM00342 helix_turn_helix, arabinose operon control protein LI89_21550 SM00926 Molybdopterin oxidoreductase Fe4S4 domain LI89_21565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_21565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_21565 SM01358 LI89_21565 LI89_21580 SM00966 SpoVT / AbrB like domain LI89_21590 SM00345 helix_turn_helix gluconate operon transcriptional repressor LI89_21670 SM00642 Alpha-amylase domain LI89_21725 SM00387 Histidine kinase-like ATPases LI89_21725 SM00433 TopoisomeraseII LI89_21735 SM00480 DNA polymerase III beta subunit LI89_21740 SM00382 ATPases associated with a variety of cellular activities LI89_21740 SM00760 Bacterial dnaA protein helix-turn-helix domain LI89_21775 SM00382 ATPases associated with a variety of cellular activities LI89_21775 SM00930 LI89_21775 LI89_21785 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). LI89_21785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain LI89_21795 SM00387 Histidine kinase-like ATPases LI89_21795 SM00388 His Kinase A (phosphoacceptor) domain LI89_21800 SM00421 helix_turn_helix, Lux Regulon LI89_21800 SM00448 cheY-homologous receiver domain LI89_21830 SM00062 Bacterial periplasmic substrate-binding proteins LI89_21845 SM00382 ATPases associated with a variety of cellular activities LI89_21880 SM00382 ATPases associated with a variety of cellular activities LI89_21925 SM01228 LI89_21925 LI89_21965 SM00857 Resolvase, N terminal domain LI89_22225 SM00857 Resolvase, N terminal domain LI89_22240 SM00420 helix_turn_helix, Deoxyribose operon repressor LI89_22240 SM01134 LI89_22240 LI89_22285 SM00869 Autotransporter beta-domain LI89_22385 SM00530 Helix-turn-helix XRE-family like proteins LI89_22445 SM00857 Resolvase, N terminal domain