XM56_00005 PF00308 Bacterial dnaA protein XM56_00005 PF08299 Bacterial dnaA protein helix-turn-helix XM56_00005 PF11638 DnaA N-terminal domain XM56_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain XM56_00010 PF02767 DNA polymerase III beta subunit, central domain XM56_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain XM56_00015 PF02463 RecF/RecN/SMC N terminal domain XM56_00020 PF00204 DNA gyrase B XM56_00020 PF00986 DNA gyrase B subunit, carboxyl terminus XM56_00020 PF01751 Toprim domain XM56_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_00025 PF08282 haloacid dehalogenase-like hydrolase XM56_00030 PF02423 Ornithine cyclodeaminase/mu-crystallin family XM56_00035 PF00291 Pyridoxal-phosphate dependent enzyme XM56_00040 PF07676 WD40-like Beta Propeller Repeat XM56_00040 PF12566 XM56_00040 XM56_00045 PF07119 XM56_00045 XM56_00050 PF00011 Hsp20/alpha crystallin family XM56_00055 PF00011 Hsp20/alpha crystallin family XM56_00060 PF02080 TrkA-C domain XM56_00060 PF06826 XM56_00060 XM56_00065 PF00155 Aminotransferase class I and II XM56_00070 PF00128 Alpha amylase, catalytic domain XM56_00075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XM56_00075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_00080 PF07690 Major Facilitator Superfamily XM56_00090 PF08964 Beta/Gamma crystallin XM56_00095 PF08964 Beta/Gamma crystallin XM56_00105 PF13673 Acetyltransferase (GNAT) domain XM56_00110 PF03352 Methyladenine glycosylase XM56_00115 PF02091 Glycyl-tRNA synthetase alpha subunit XM56_00120 PF02092 XM56_00120 XM56_00120 PF05746 DALR anticodon binding domain XM56_00125 PF11254 XM56_00125 XM56_00130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_00130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_00130 PF02378 Phosphotransferase system, EIIC XM56_00135 PF01232 Mannitol dehydrogenase Rossmann domain XM56_00135 PF08125 Mannitol dehydrogenase C-terminal domain XM56_00140 PF05068 Mannitol repressor XM56_00145 PF01810 XM56_00145 XM56_00150 PF00155 Aminotransferase class I and II XM56_00150 PF00392 Bacterial regulatory proteins, gntR family XM56_00155 PF10928 Protein of unknown function (DUF2810) XM56_00160 PF04014 Antidote-toxin recognition MazE XM56_00165 PF01850 PIN domain XM56_00170 PF03473 MOSC domain XM56_00170 PF03475 3-alpha domain XM56_00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_00175 PF00672 HAMP domain XM56_00175 PF16591 XM56_00175 XM56_00180 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XM56_00180 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XM56_00185 PF02634 FdhD/NarQ family XM56_00190 PF00384 Molybdopterin oxidoreductase XM56_00190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XM56_00195 PF00384 Molybdopterin oxidoreductase XM56_00195 PF01568 Molydopterin dinucleotide binding domain XM56_00200 PF09163 Formate dehydrogenase N, transmembrane XM56_00200 PF13247 4Fe-4S dicluster domain XM56_00205 PF01292 Prokaryotic cytochrome b561 XM56_00210 PF04216 Protein involved in formate dehydrogenase formation XM56_00215 PF03841 L-seryl-tRNA selenium transferase XM56_00215 PF12390 XM56_00215 XM56_00220 PF00009 Elongation factor Tu GTP binding domain XM56_00220 PF09106 Elongation factor SelB, winged helix XM56_00220 PF09107 Elongation factor SelB, winged helix XM56_00225 PF07690 Major Facilitator Superfamily XM56_00230 PF01757 XM56_00230 XM56_00235 PF01965 DJ-1/PfpI family XM56_00235 PF12833 Helix-turn-helix domain XM56_00240 PF00857 Isochorismatase family XM56_00245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_00245 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_00250 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XM56_00250 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XM56_00260 PF13407 Periplasmic binding protein domain XM56_00265 PF00005 ABC transporter XM56_00270 PF02653 XM56_00270 XM56_00275 PF12833 Helix-turn-helix domain XM56_00275 PF13377 Periplasmic binding protein-like domain XM56_00280 PF00589 Phage integrase family XM56_00280 PF13356 Domain of unknown function (DUF4102) XM56_00285 PF13289 XM56_00285 XM56_00300 PF00665 Integrase core domain XM56_00305 PF01695 IstB-like ATP binding protein XM56_00310 PF00324 Amino acid permease XM56_00315 PF00221 Aromatic amino acid lyase XM56_00320 PF01175 Urocanase XM56_00320 PF17391 XM56_00320 XM56_00320 PF17392 XM56_00320 XM56_00330 PF00577 Outer membrane usher protein XM56_00330 PF13953 PapC C-terminal domain XM56_00330 PF13954 PapC N-terminal domain XM56_00335 PF01238 Phosphomannose isomerase type I XM56_00340 PF00232 Glycosyl hydrolase family 1 XM56_00345 PF16990 XM56_00345 XM56_00355 PF02378 Phosphotransferase system, EIIC XM56_00360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_00365 PF02378 Phosphotransferase system, EIIC XM56_00370 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit XM56_00375 PF00480 ROK family XM56_00380 PF00356 Bacterial regulatory proteins, lacI family XM56_00380 PF13377 Periplasmic binding protein-like domain XM56_00385 PF13673 Acetyltransferase (GNAT) domain XM56_00390 PF01548 XM56_00390 XM56_00390 PF02371 XM56_00390 XM56_00395 PF13708 XM56_00395 XM56_00400 PF06755 XM56_00400 XM56_00405 PF00872 XM56_00405 XM56_00410 PF12146 Putative lysophospholipase XM56_00415 PF05860 haemagglutination activity domain XM56_00420 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XM56_00420 PF08479 POTRA domain, ShlB-type XM56_00420 PF17287 XM56_00420 XM56_00425 PF05860 haemagglutination activity domain XM56_00440 PF07690 Major Facilitator Superfamily XM56_00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_00445 PF05231 XM56_00445 XM56_00445 PF07730 Histidine kinase XM56_00450 PF00072 Response regulator receiver domain XM56_00450 PF00196 Bacterial regulatory proteins, luxR family XM56_00455 PF00884 Sulfatase XM56_00455 PF08019 XM56_00455 XM56_00460 PF02566 OsmC-like protein XM56_00465 PF01548 XM56_00465 XM56_00465 PF02371 XM56_00465 XM56_00470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_00475 PF00528 Binding-protein-dependent transport system inner membrane component XM56_00480 PF00528 Binding-protein-dependent transport system inner membrane component XM56_00480 PF12911 XM56_00480 XM56_00485 PF00005 ABC transporter XM56_00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_00490 PF00005 ABC transporter XM56_00490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_00495 PF11658 XM56_00495 XM56_00500 PF11120 XM56_00500 XM56_00505 PF10995 XM56_00505 XM56_00510 PF10945 XM56_00510 XM56_00515 PF06564 YhjQ protein XM56_00520 PF00535 Glycosyl transferase family 2 XM56_00520 PF03552 Cellulose synthase XM56_00520 PF07238 PilZ domain XM56_00525 PF03170 Bacterial cellulose synthase subunit XM56_00530 PF01270 Glycosyl hydrolases family 8 XM56_00545 PF00563 EAL domain XM56_00545 PF17154 XM56_00545 XM56_00550 PF06178 Oligogalacturonate-specific porin protein (KdgM) XM56_00555 PF06917 Periplasmic pectate lyase XM56_00560 PF00754 F5/8 type C domain XM56_00565 PF00375 Sodium:dicarboxylate symporter family XM56_00570 PF00675 Insulinase (Peptidase family M16) XM56_00570 PF05193 Peptidase M16 inactive domain XM56_00575 PF00294 pfkB family carbohydrate kinase XM56_00580 PF01361 Tautomerase enzyme XM56_00585 PF00563 EAL domain XM56_00590 PF05170 XM56_00590 XM56_00595 PF02611 CDP-diacylglycerol pyrophosphatase XM56_00600 PF03631 XM56_00600 XM56_00605 PF03212 Pertactin XM56_00605 PF03797 Autotransporter beta-domain XM56_00610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XM56_00610 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_00615 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ XM56_00620 PF01432 Peptidase family M3 XM56_00625 PF04445 Putative SAM-dependent methyltransferase XM56_00630 PF08548 Peptidase M10 serralysin C terminal XM56_00635 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XM56_00635 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain XM56_00640 PF00582 Universal stress protein family XM56_00645 PF10625 XM56_00645 XM56_00650 PF01384 XM56_00650 XM56_00655 PF03486 HI0933-like protein XM56_00660 PF00375 Sodium:dicarboxylate symporter family XM56_00665 PF14330 XM56_00665 XM56_00670 PF07287 XM56_00670 XM56_00675 PF05034 Methylaspartate ammonia-lyase N-terminus XM56_00675 PF07476 Methylaspartate ammonia-lyase C-terminus XM56_00680 PF06368 Methylaspartate mutase E chain (MutE) XM56_00685 PF13941 XM56_00685 XM56_00690 PF02310 B12 binding domain XM56_00695 PF00288 GHMP kinases N terminal domain XM56_00700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_00705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_00705 PF03466 LysR substrate binding domain XM56_00710 PF05681 XM56_00710 XM56_00710 PF05683 Fumarase C-terminus XM56_00715 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XM56_00720 PF08282 haloacid dehalogenase-like hydrolase XM56_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_00730 PF03466 LysR substrate binding domain XM56_00735 PF07690 Major Facilitator Superfamily XM56_00740 PF00171 Aldehyde dehydrogenase family XM56_00745 PF04962 KduI/IolB family XM56_00750 PF01380 SIS domain XM56_00750 PF01418 Helix-turn-helix domain, rpiR family XM56_00755 PF00294 pfkB family carbohydrate kinase XM56_00755 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) XM56_00760 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_00760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_00760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_00765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XM56_00765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XM56_00770 PF01261 Xylose isomerase-like TIM barrel XM56_00775 PF00583 Acetyltransferase (GNAT) family XM56_00780 PF02678 Pirin XM56_00785 PF00356 Bacterial regulatory proteins, lacI family XM56_00785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_00790 PF02447 XM56_00790 XM56_00795 PF01202 Shikimate kinase XM56_00800 PF01914 XM56_00800 XM56_00805 PF01118 Semialdehyde dehydrogenase, NAD binding domain XM56_00805 PF02774 Semialdehyde dehydrogenase, dimerisation domain XM56_00810 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_00810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_00810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_00815 PF03306 Alpha-acetolactate decarboxylase XM56_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_00820 PF03466 LysR substrate binding domain XM56_00825 PF06580 XM56_00825 XM56_00825 PF07694 5TMR of 5TMR-LYT XM56_00830 PF00128 Alpha amylase, catalytic domain XM56_00830 PF02806 Alpha amylase, C-terminal all-beta domain XM56_00830 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XM56_00835 PF00128 Alpha amylase, catalytic domain XM56_00835 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) XM56_00840 PF00483 Nucleotidyl transferase XM56_00845 PF00534 Glycosyl transferases group 1 XM56_00845 PF08323 Starch synthase catalytic domain XM56_00850 PF00343 Carbohydrate phosphorylase XM56_00855 PF01266 FAD dependent oxidoreductase XM56_00855 PF16901 XM56_00855 XM56_00865 PF00455 XM56_00865 XM56_00865 PF08220 DeoR-like helix-turn-helix domain XM56_00870 PF01694 Rhomboid family XM56_00870 PF12122 Protein of unknown function (DUF3582) XM56_00875 PF00581 Rhodanese-like domain XM56_00885 PF00196 Bacterial regulatory proteins, luxR family XM56_00890 PF00343 Carbohydrate phosphorylase XM56_00895 PF02446 4-alpha-glucanotransferase XM56_00900 PF01548 XM56_00900 XM56_00900 PF02371 XM56_00900 XM56_00905 PF01106 NifU-like domain XM56_00905 PF01521 Iron-sulphur cluster biosynthesis XM56_00915 PF00561 alpha/beta hydrolase fold XM56_00920 PF07338 Protein of unknown function (DUF1471) XM56_00925 PF09012 FeoC like transcriptional regulator XM56_00930 PF02421 Ferrous iron transport protein B XM56_00930 PF07664 XM56_00930 XM56_00930 PF07670 Nucleoside recognition XM56_00935 PF04023 FeoA domain XM56_00940 PF00575 S1 RNA binding domain XM56_00940 PF09371 Tex-like protein N-terminal domain XM56_00940 PF12836 Helix-hairpin-helix motif XM56_00940 PF16921 XM56_00940 XM56_00945 PF07690 Major Facilitator Superfamily XM56_00965 PF01272 Transcription elongation factor, GreA/GreB, C-term XM56_00965 PF03449 Transcription elongation factor, N-terminal XM56_00970 PF00072 Response regulator receiver domain XM56_00970 PF00486 Transcriptional regulatory protein, C terminal XM56_00975 PF00512 His Kinase A (phospho-acceptor) domain XM56_00975 PF00672 HAMP domain XM56_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_00980 PF01548 XM56_00980 XM56_00980 PF02371 XM56_00980 XM56_00985 PF01293 Phosphoenolpyruvate carboxykinase XM56_00990 PF01430 Hsp33 protein XM56_00995 PF01479 S4 domain XM56_01000 PF13419 Haloacid dehalogenase-like hydrolase XM56_01005 PF07095 Intracellular growth attenuator protein IgaA XM56_01010 PF00293 NUDIX domain XM56_01015 PF00905 Penicillin binding protein transpeptidase domain XM56_01015 PF00912 Transglycosylase XM56_01015 PF17092 XM56_01015 XM56_01020 PF11104 Type IV pilus assembly protein PilM; XM56_01025 PF05137 XM56_01025 XM56_01035 PF10748 XM56_01035 XM56_01040 PF00263 XM56_01040 XM56_01040 PF03958 Bacterial type II/III secretion system short domain XM56_01045 PF01202 Shikimate kinase XM56_01050 PF01761 3-dehydroquinate synthase XM56_01055 PF05036 Sporulation related domain XM56_01060 PF02086 D12 class N6 adenine-specific DNA methyltransferase XM56_01065 PF00834 Ribulose-phosphate 3 epimerase family XM56_01070 PF13419 Haloacid dehalogenase-like hydrolase XM56_01075 PF00579 tRNA synthetases class I (W and Y) XM56_01080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_01080 PF10414 Sirohaem synthase dimerisation region XM56_01080 PF13241 Putative NAD(P)-binding XM56_01080 PF14824 Sirohaem biosynthesis protein central XM56_01085 PF01226 Formate/nitrite transporter XM56_01090 PF13806 Rieske-like [2Fe-2S] domain XM56_01095 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XM56_01095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XM56_01095 PF04324 BFD-like [2Fe-2S] binding domain XM56_01095 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_01100 PF07969 Amidohydrolase family XM56_01105 PF07690 Major Facilitator Superfamily XM56_01110 PF00356 Bacterial regulatory proteins, lacI family XM56_01110 PF13377 Periplasmic binding protein-like domain XM56_01115 PF02056 Family 4 glycosyl hydrolase XM56_01115 PF11975 Family 4 glycosyl hydrolase C-terminal domain XM56_01120 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XM56_01125 PF05872 XM56_01125 XM56_01130 PF00117 Glutamine amidotransferase class-I XM56_01135 PF00202 Aminotransferase class-III XM56_01140 PF12805 XM56_01140 XM56_01140 PF13515 XM56_01140 XM56_01145 PF00027 Cyclic nucleotide-binding domain XM56_01145 PF00325 Bacterial regulatory proteins, crp family XM56_01150 PF02566 OsmC-like protein XM56_01155 PF00485 Phosphoribulokinase / Uridine kinase family XM56_01160 PF06794 Uncharacterised protein family (UPF0270) XM56_01165 PF00561 alpha/beta hydrolase fold XM56_01170 PF01810 XM56_01170 XM56_01175 PF02567 Phenazine biosynthesis-like protein XM56_01180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system XM56_01185 PF00005 ABC transporter XM56_01190 PF00528 Binding-protein-dependent transport system inner membrane component XM56_01195 PF02668 Taurine catabolism dioxygenase TauD, TfdA family XM56_01200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XM56_01205 PF00535 Glycosyl transferase family 2 XM56_01210 PF00005 ABC transporter XM56_01210 PF12848 ABC transporter XM56_01215 PF02525 Flavodoxin-like fold XM56_01220 PF00999 Sodium/hydrogen exchanger family XM56_01220 PF02254 TrkA-N domain XM56_01225 PF09526 XM56_01225 XM56_01230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XM56_01235 PF04102 SlyX XM56_01240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XM56_01240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XM56_01245 PF08348 XM56_01245 XM56_01245 PF13309 XM56_01245 XM56_01250 PF02635 DsrE/DsrF-like family XM56_01255 PF02635 DsrE/DsrF-like family XM56_01260 PF04077 DsrH like protein XM56_01265 PF00164 Ribosomal protein S12/S23 XM56_01270 PF00177 Ribosomal protein S7p/S5e XM56_01275 PF00009 Elongation factor Tu GTP binding domain XM56_01275 PF00679 Elongation factor G C-terminus XM56_01275 PF03144 Elongation factor Tu domain 2 XM56_01275 PF03764 Elongation factor G, domain IV XM56_01275 PF14492 Elongation Factor G, domain II XM56_01280 PF00009 Elongation factor Tu GTP binding domain XM56_01280 PF03143 Elongation factor Tu C-terminal domain XM56_01280 PF03144 Elongation factor Tu domain 2 XM56_01285 PF04324 BFD-like [2Fe-2S] binding domain XM56_01290 PF00210 Ferritin-like domain XM56_01295 PF00338 Ribosomal protein S10p/S20e XM56_01300 PF00297 Ribosomal protein L3 XM56_01305 PF00573 Ribosomal protein L4/L1 family XM56_01310 PF00276 Ribosomal protein L23 XM56_01315 PF00181 Ribosomal Proteins L2, RNA binding domain XM56_01315 PF03947 Ribosomal Proteins L2, C-terminal domain XM56_01320 PF00203 Ribosomal protein S19 XM56_01325 PF00237 Ribosomal protein L22p/L17e XM56_01330 PF00189 Ribosomal protein S3, C-terminal domain XM56_01330 PF07650 KH domain XM56_01335 PF00252 Ribosomal protein L16p/L10e XM56_01340 PF00831 Ribosomal L29 protein XM56_01345 PF00366 Ribosomal protein S17 XM56_01350 PF00238 Ribosomal protein L14p/L23e XM56_01355 PF00467 KOW motif XM56_01355 PF17136 XM56_01355 XM56_01360 PF00281 Ribosomal protein L5 XM56_01360 PF00673 ribosomal L5P family C-terminus XM56_01365 PF00253 Ribosomal protein S14p/S29e XM56_01370 PF00410 Ribosomal protein S8 XM56_01375 PF00347 Ribosomal protein L6 XM56_01380 PF00861 Ribosomal L18p/L5e family XM56_01385 PF00333 Ribosomal protein S5, N-terminal domain XM56_01385 PF03719 Ribosomal protein S5, C-terminal domain XM56_01390 PF00327 Ribosomal protein L30p/L7e XM56_01395 PF00828 Ribosomal protein L18e/L15 XM56_01400 PF00344 SecY translocase XM56_01405 PF00444 Ribosomal protein L36 XM56_01410 PF00416 Ribosomal protein S13/S18 XM56_01415 PF00411 Ribosomal protein S11 XM56_01420 PF00163 Ribosomal protein S4/S9 N-terminal domain XM56_01420 PF01479 S4 domain XM56_01425 PF01000 RNA polymerase Rpb3/RpoA insert domain XM56_01425 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain XM56_01425 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain XM56_01430 PF01196 Ribosomal protein L17 XM56_01435 PF09350 XM56_01435 XM56_01440 PF13411 MerR HTH family regulatory protein XM56_01445 PF03889 XM56_01445 XM56_01450 PF05598 XM56_01450 XM56_01450 PF13751 XM56_01450 XM56_01455 PF01741 Large-conductance mechanosensitive channel, MscL XM56_01460 PF02080 TrkA-C domain XM56_01460 PF02254 TrkA-N domain XM56_01465 PF01029 NusB family XM56_01465 PF01189 NOL1/NOP2/sun family XM56_01470 PF00551 Formyl transferase XM56_01470 PF02911 Formyl transferase, C-terminal domain XM56_01475 PF01327 Polypeptide deformylase XM56_01480 PF02481 DNA recombination-mediator protein A XM56_01485 PF04361 XM56_01485 XM56_01490 PF01396 XM56_01490 XM56_01495 PF01300 Telomere recombination XM56_01500 PF01488 Shikimate / quinate 5-dehydrogenase XM56_01500 PF08501 Shikimate dehydrogenase substrate binding domain XM56_01505 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_01545 PF04204 Homoserine O-succinyltransferase XM56_01550 PF01274 Malate synthase XM56_01555 PF00463 Isocitrate lyase family XM56_01560 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) XM56_01565 PF01614 Bacterial transcriptional regulator XM56_01565 PF09339 IclR helix-turn-helix domain XM56_01570 PF00809 Pterin binding enzyme XM56_01570 PF02310 B12 binding domain XM56_01570 PF02574 Homocysteine S-methyltransferase XM56_01570 PF02607 B12 binding domain XM56_01570 PF02965 Vitamin B12 dependent methionine synthase, activation domain XM56_01575 PF05860 haemagglutination activity domain XM56_01575 PF13332 XM56_01575 XM56_01580 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XM56_01580 PF08479 POTRA domain, ShlB-type XM56_01580 PF17287 XM56_01580 XM56_01585 PF01758 Sodium Bile acid symporter family XM56_01590 PF00696 Amino acid kinase family XM56_01595 PF00342 Phosphoglucose isomerase XM56_01600 PF06146 XM56_01600 XM56_01605 PF00528 Binding-protein-dependent transport system inner membrane component XM56_01610 PF00528 Binding-protein-dependent transport system inner membrane component XM56_01610 PF14785 Maltose transport system permease protein MalF P2 domain XM56_01615 PF13416 Bacterial extracellular solute-binding protein XM56_01620 PF00005 ABC transporter XM56_01620 PF08402 TOBE domain XM56_01625 PF02264 LamB porin XM56_01630 PF07148 XM56_01630 XM56_01640 PF04345 Chorismate lyase XM56_01645 PF01040 UbiA prenyltransferase family XM56_01650 PF01553 Acyltransferase XM56_01655 PF01219 Prokaryotic diacylglycerol kinase XM56_01660 PF00717 Peptidase S24-like XM56_01660 PF01726 LexA DNA binding domain XM56_01665 PF05532 CsbD-like XM56_01670 PF01475 Ferric uptake regulator family XM56_01675 PF01757 XM56_01675 XM56_01680 PF01207 Dihydrouridine synthase (Dus) XM56_01685 PF09583 XM56_01685 XM56_01695 PF00107 Zinc-binding dehydrogenase XM56_01695 PF08240 Alcohol dehydrogenase GroES-like domain XM56_01700 PF00772 DnaB-like helicase N terminal domain XM56_01700 PF03796 DnaB-like helicase C terminal domain XM56_01705 PF00842 Alanine racemase, C-terminal domain XM56_01705 PF01168 Alanine racemase, N-terminal domain XM56_01710 PF00155 Aminotransferase class I and II XM56_01715 PF01548 XM56_01715 XM56_01715 PF02371 XM56_01715 XM56_01720 PF04237 YjbR XM56_01730 PF00436 Single-strand binding protein family XM56_01735 PF00589 Phage integrase family XM56_01765 PF01527 Transposase XM56_01770 PF00665 Integrase core domain XM56_01770 PF13276 XM56_01770 XM56_01780 PF07804 HipA-like C-terminal domain XM56_01780 PF13657 HipA N-terminal domain XM56_01785 PF01381 Helix-turn-helix XM56_01790 PF00043 Glutathione S-transferase, C-terminal domain XM56_01790 PF02798 Glutathione S-transferase, N-terminal domain XM56_01795 PF00860 Permease family XM56_01800 PF00999 Sodium/hydrogen exchanger family XM56_01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_01805 PF03466 LysR substrate binding domain XM56_01810 PF03788 XM56_01810 XM56_01815 PF04172 XM56_01815 XM56_01820 PF00005 ABC transporter XM56_01825 PF00528 Binding-protein-dependent transport system inner membrane component XM56_01830 PF00528 Binding-protein-dependent transport system inner membrane component XM56_01835 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_01840 PF10142 PhoPQ-activated pathogenicity-related protein XM56_01845 PF03279 XM56_01845 XM56_01850 PF00939 Sodium:sulfate symporter transmembrane region XM56_01855 PF00313 'Cold-shock' DNA-binding domain XM56_01860 PF00313 'Cold-shock' DNA-binding domain XM56_01865 PF05433 XM56_01865 XM56_01870 PF00990 GGDEF domain XM56_01870 PF02743 Cache domain XM56_01875 PF02954 Bacterial regulatory protein, Fis family XM56_01880 PF01207 Dihydrouridine synthase (Dus) XM56_01885 PF06325 Ribosomal protein L11 methyltransferase (PrmA) XM56_01890 PF00474 Sodium:solute symporter family XM56_01895 PF06196 XM56_01895 XM56_01900 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain XM56_01900 PF02785 Biotin carboxylase C-terminal domain XM56_01900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XM56_01905 PF00364 Biotin-requiring enzyme XM56_01910 PF01220 Dehydroquinase class II XM56_01915 PF01794 XM56_01915 XM56_01920 PF00174 Oxidoreductase molybdopterin binding domain XM56_01925 PF00107 Zinc-binding dehydrogenase XM56_01925 PF08240 Alcohol dehydrogenase GroES-like domain XM56_01930 PF00563 EAL domain XM56_01930 PF00990 GGDEF domain XM56_01930 PF17157 XM56_01930 XM56_01935 PF06723 MreB/Mbl protein XM56_01940 PF04085 rod shape-determining protein MreC XM56_01945 PF04093 XM56_01945 XM56_01950 PF02545 Maf-like protein XM56_01955 PF00575 S1 RNA binding domain XM56_01955 PF10150 Ribonuclease E/G family XM56_01960 PF13116 XM56_01960 XM56_01960 PF13502 XM56_01960 XM56_01965 PF00795 Carbon-nitrogen hydrolase XM56_01970 PF01523 Putative modulator of DNA gyrase XM56_01980 PF01381 Helix-turn-helix XM56_01995 PF10828 XM56_01995 XM56_02000 PF13539 D-alanyl-D-alanine carboxypeptidase XM56_02005 PF16083 XM56_02005 XM56_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_02035 PF03466 LysR substrate binding domain XM56_02040 PF07869 XM56_02040 XM56_02045 PF13437 HlyD family secretion protein XM56_02045 PF13533 Biotin-lipoyl like XM56_02050 PF04632 XM56_02050 XM56_02055 PF00171 Aldehyde dehydrogenase family XM56_02060 PF00545 ribonuclease XM56_02065 PF01337 Barstar (barnase inhibitor) XM56_02070 PF04751 Protein of unknown function (DUF615) XM56_02075 PF01523 Putative modulator of DNA gyrase XM56_02080 PF01548 XM56_02080 XM56_02080 PF02371 XM56_02080 XM56_02085 PF07361 Cytochrome b562 XM56_02090 PF01272 Transcription elongation factor, GreA/GreB, C-term XM56_02090 PF14760 Rnk N-terminus XM56_02100 PF14272 XM56_02100 XM56_02105 PF14189 XM56_02105 XM56_02110 PF14188 XM56_02110 XM56_02115 PF14187 XM56_02115 XM56_02120 PF01979 Amidohydrolase family XM56_02125 PF03841 L-seryl-tRNA selenium transferase XM56_02130 PF07071 Protein of unknown function (DUF1341) XM56_02135 PF10282 Lactonase, 7-bladed beta-propeller XM56_02140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_02140 PF00874 PRD domain XM56_02140 PF05043 Mga helix-turn-helix domain XM56_02140 PF08279 HTH domain XM56_02145 PF01381 Helix-turn-helix XM56_02150 PF05015 Plasmid maintenance system killer protein XM56_02155 PF00122 E1-E2 ATPase XM56_02155 PF00690 Cation transporter/ATPase, N-terminus XM56_02155 PF00702 haloacid dehalogenase-like hydrolase XM56_02160 PF00356 Bacterial regulatory proteins, lacI family XM56_02160 PF13377 Periplasmic binding protein-like domain XM56_02165 PF00367 phosphotransferase system, EIIB XM56_02165 PF02378 Phosphotransferase system, EIIC XM56_02170 PF00128 Alpha amylase, catalytic domain XM56_02170 PF11941 Domain of unknown function (DUF3459) XM56_02175 PF00227 Proteasome subunit XM56_02180 PF01841 Transglutaminase-like superfamily XM56_02180 PF08379 XM56_02180 XM56_02185 PF04168 XM56_02185 XM56_02190 PF14403 XM56_02190 XM56_02195 PF01042 Endoribonuclease L-PSP XM56_02200 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain XM56_02200 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain XM56_02205 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XM56_02205 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XM56_02210 PF00381 PTS HPr component phosphorylation site XM56_02215 PF03668 XM56_02215 XM56_02220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_02225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XM56_02230 PF00309 XM56_02230 XM56_02230 PF04552 Sigma-54, DNA binding domain XM56_02230 PF04963 Sigma-54 factor, core binding domain XM56_02235 PF00005 ABC transporter XM56_02235 PF12399 Branched-chain amino acid ATP-binding cassette transporter XM56_02240 PF03968 OstA-like protein XM56_02245 PF06835 Lipopolysaccharide-assembly, LptC-related XM56_02250 PF08282 haloacid dehalogenase-like hydrolase XM56_02255 PF00571 CBS domain XM56_02255 PF01380 SIS domain XM56_02260 PF01699 Sodium/calcium exchanger protein XM56_02265 PF00005 ABC transporter XM56_02270 PF02405 XM56_02270 XM56_02275 PF02470 XM56_02275 XM56_02280 PF05494 Toluene tolerance, Ttg2 XM56_02285 PF13466 STAS domain XM56_02290 PF01722 BolA-like protein XM56_02295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XM56_02300 PF13180 PDZ domain XM56_02300 PF13365 Trypsin-like peptidase domain XM56_02305 PF00595 PDZ domain (Also known as DHR or GLGF) XM56_02305 PF13180 PDZ domain XM56_02305 PF13365 Trypsin-like peptidase domain XM56_02310 PF06295 XM56_02310 XM56_02315 PF03969 AFG1-like ATPase XM56_02320 PF00572 Ribosomal protein L13 XM56_02325 PF00380 Ribosomal protein S9/S16 XM56_02330 PF00043 Glutathione S-transferase, C-terminal domain XM56_02330 PF02798 Glutathione S-transferase, N-terminal domain XM56_02335 PF04386 Stringent starvation protein B XM56_02350 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_02350 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster XM56_02355 PF00310 Glutamine amidotransferases class-II XM56_02355 PF01493 GXGXG motif XM56_02355 PF01645 Conserved region in glutamate synthase XM56_02355 PF04898 Glutamate synthase central domain XM56_02360 PF04055 Radical SAM superfamily XM56_02360 PF16199 XM56_02360 XM56_02365 PF00072 Response regulator receiver domain XM56_02365 PF00512 His Kinase A (phospho-acceptor) domain XM56_02365 PF00989 PAS fold XM56_02365 PF01627 Hpt domain XM56_02365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_02375 PF00912 Transglycosylase XM56_02380 PF04972 BON domain XM56_02385 PF13580 SIS domain XM56_02390 PF02021 Uncharacterised protein family UPF0102 XM56_02395 PF04348 LppC putative lipoprotein XM56_02400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_02410 PF16970 XM56_02410 XM56_02415 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_02415 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_02420 PF00577 Outer membrane usher protein XM56_02420 PF13953 PapC C-terminal domain XM56_02420 PF13954 PapC N-terminal domain XM56_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_02430 PF03466 LysR substrate binding domain XM56_02435 PF00248 Aldo/keto reductase family XM56_02440 PF00107 Zinc-binding dehydrogenase XM56_02440 PF08240 Alcohol dehydrogenase GroES-like domain XM56_02445 PF02678 Pirin XM56_02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_02450 PF03466 LysR substrate binding domain XM56_02455 PF13409 Glutathione S-transferase, N-terminal domain XM56_02455 PF13410 Glutathione S-transferase, C-terminal domain XM56_02460 PF07681 XM56_02460 XM56_02465 PF13997 XM56_02465 XM56_02470 PF07332 XM56_02470 XM56_02475 PF05957 XM56_02475 XM56_02480 PF06476 XM56_02480 XM56_02485 PF13721 SecD export protein N-terminal TM region XM56_02490 PF09335 XM56_02490 XM56_02500 PF00392 Bacterial regulatory proteins, gntR family XM56_02500 PF07729 FCD domain XM56_02505 PF07690 Major Facilitator Superfamily XM56_02510 PF02614 Glucuronate isomerase XM56_02515 PF01232 Mannitol dehydrogenase Rossmann domain XM56_02515 PF08125 Mannitol dehydrogenase C-terminal domain XM56_02520 PF04295 XM56_02520 XM56_02520 PF08666 SAF domain XM56_02525 PF10688 XM56_02525 XM56_02530 PF00375 Sodium:dicarboxylate symporter family XM56_02535 PF03741 XM56_02535 XM56_02545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XM56_02550 PF01863 Protein of unknown function DUF45 XM56_02555 PF03797 Autotransporter beta-domain XM56_02565 PF03797 Autotransporter beta-domain XM56_02570 PF05175 Methyltransferase small domain XM56_02575 PF01548 XM56_02575 XM56_02575 PF02371 XM56_02575 XM56_02580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XM56_02580 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_02585 PF00892 EamA-like transporter family XM56_02590 PF03729 XM56_02590 XM56_02600 PF00282 Pyridoxal-dependent decarboxylase conserved domain XM56_02605 PF13520 Amino acid permease XM56_02610 PF04960 Glutaminase XM56_02615 PF00367 phosphotransferase system, EIIB XM56_02615 PF02378 Phosphotransferase system, EIIC XM56_02620 PF13580 SIS domain XM56_02625 PF01380 SIS domain XM56_02625 PF01418 Helix-turn-helix domain, rpiR family XM56_02630 PF00933 Glycosyl hydrolase family 3 N terminal domain XM56_02640 PF07075 Protein of unknown function (DUF1343) XM56_02650 PF01548 XM56_02650 XM56_02650 PF02371 XM56_02650 XM56_02655 PF00140 Sigma-70 factor, region 1 XM56_02655 PF03979 Sigma-70 factor, region 1 XM56_02655 PF04539 Sigma-70 region 3 XM56_02655 PF04542 Sigma-70 region 2 XM56_02655 PF04545 Sigma-70, region 4 XM56_02655 PF04546 Sigma-70, non-essential region XM56_02660 PF01807 CHC2 zinc finger XM56_02660 PF08275 DNA primase catalytic core, N-terminal domain XM56_02660 PF08278 DNA primase DnaG DnaB-binding XM56_02660 PF10410 DnaB-helicase binding domain of primase XM56_02660 PF13155 Toprim-like XM56_02665 PF01165 Ribosomal protein S21 XM56_02670 PF00814 Glycoprotease family XM56_02675 PF02660 XM56_02675 XM56_02680 PF02152 Dihydroneopterin aldolase XM56_02685 PF02673 XM56_02685 XM56_02690 PF01743 Poly A polymerase head domain XM56_02690 PF01966 HD domain XM56_02690 PF12627 Probable RNA and SrmB- binding site of polymerase A XM56_02695 PF08239 Bacterial SH3 domain XM56_02700 PF01928 CYTH domain XM56_02705 PF03710 Glutamate-ammonia ligase adenylyltransferase XM56_02705 PF08335 GlnD PII-uridylyltransferase XM56_02710 PF00294 pfkB family carbohydrate kinase XM56_02710 PF01467 Cytidylyltransferase XM56_02715 PF13520 Amino acid permease XM56_02720 PF04380 XM56_02720 XM56_02725 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase XM56_02730 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase XM56_02735 PF03738 Glutathionylspermidine synthase preATP-grasp XM56_02740 PF06693 XM56_02740 XM56_02745 PF02321 Outer membrane efflux protein XM56_02750 PF00293 NUDIX domain XM56_02755 PF06853 XM56_02755 XM56_02760 PF00149 Calcineurin-like phosphoesterase XM56_02765 PF05728 Uncharacterised protein family (UPF0227) XM56_02770 PF00204 DNA gyrase B XM56_02770 PF00986 DNA gyrase B subunit, carboxyl terminus XM56_02770 PF01751 Toprim domain XM56_02770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_02775 PF03466 LysR substrate binding domain XM56_02780 PF03992 Antibiotic biosynthesis monooxygenase XM56_02785 PF02525 Flavodoxin-like fold XM56_02790 PF00521 DNA gyrase/topoisomerase IV, subunit A XM56_02790 PF03989 DNA gyrase C-terminal domain, beta-propeller XM56_02795 PF01553 Acyltransferase XM56_02800 PF00394 Multicopper oxidase XM56_02800 PF07731 Multicopper oxidase XM56_02800 PF07732 Multicopper oxidase XM56_02805 PF04055 Radical SAM superfamily XM56_02805 PF08497 XM56_02805 XM56_02805 PF11842 XM56_02805 XM56_02810 PF00248 Aldo/keto reductase family XM56_02815 PF00465 Iron-containing alcohol dehydrogenase XM56_02820 PF06719 XM56_02820 XM56_02820 PF12833 Helix-turn-helix domain XM56_02825 PF09335 XM56_02825 XM56_02830 PF01053 Cys/Met metabolism PLP-dependent enzyme XM56_02835 PF01618 XM56_02835 XM56_02840 PF02472 Biopolymer transport protein ExbD/TolR XM56_02845 PF00092 von Willebrand factor type A domain XM56_02850 PF16964 XM56_02850 XM56_02865 PF00482 Type II secretion system (T2SS), protein F XM56_02870 PF00482 Type II secretion system (T2SS), protein F XM56_02875 PF00437 Type II/IV secretion system protein XM56_02890 PF00263 XM56_02890 XM56_02890 PF13629 XM56_02890 XM56_02900 PF01478 Type IV leader peptidase family XM56_02910 PF00486 Transcriptional regulatory protein, C terminal XM56_02915 PF13532 2OG-Fe(II) oxygenase superfamily XM56_02920 PF00873 AcrB/AcrD/AcrF family XM56_02935 PF12833 Helix-turn-helix domain XM56_02950 PF02321 Outer membrane efflux protein XM56_02960 PF00005 ABC transporter XM56_02975 PF00665 Integrase core domain XM56_02980 PF01527 Transposase XM56_02985 PF00756 Putative esterase XM56_02985 PF11806 Domain of unknown function (DUF3327) XM56_02990 PF00005 ABC transporter XM56_02995 PF01032 FecCD transport family XM56_03000 PF01032 FecCD transport family XM56_03005 PF01497 Periplasmic binding protein XM56_03010 PF07690 Major Facilitator Superfamily XM56_03015 PF01370 NAD dependent epimerase/dehydratase family XM56_03020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_03020 PF02203 Tar ligand binding domain homologue XM56_03030 PF00771 FHIPEP family XM56_03035 PF01312 FlhB HrpN YscU SpaS Family XM56_03040 PF01311 XM56_03040 XM56_03045 PF01313 XM56_03045 XM56_03050 PF00813 XM56_03050 XM56_03055 PF01052 Surface presentation of antigens (SPOA) XM56_03060 PF01052 Surface presentation of antigens (SPOA) XM56_03065 PF00158 Sigma-54 interaction domain XM56_03065 PF02954 Bacterial regulatory protein, Fis family XM56_03070 PF02049 XM56_03070 XM56_03075 PF01514 Secretory protein of YscJ/FliF family XM56_03075 PF08345 XM56_03075 XM56_03080 PF01706 FliG C-terminal domain XM56_03080 PF14841 FliG middle domain XM56_03080 PF14842 FliG N-terminal domain XM56_03085 PF02108 XM56_03085 XM56_03085 PF09811 XM56_03085 XM56_03090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_03095 PF02050 Flagellar FliJ protein XM56_03100 PF01548 XM56_03100 XM56_03100 PF02371 XM56_03100 XM56_03105 PF05130 FlgN protein XM56_03110 PF04316 Anti-sigma-28 factor, FlgM XM56_03115 PF13144 SAF-like XM56_03120 PF00460 Flagella basal body rod protein XM56_03125 PF00460 Flagella basal body rod protein XM56_03125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_03130 PF03963 XM56_03130 XM56_03130 PF13860 FlgD Ig-like domain XM56_03130 PF13861 FlgD Tudor-like domain XM56_03135 PF00460 Flagella basal body rod protein XM56_03135 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_03135 PF07559 Flagellar basal body protein FlaE XM56_03140 PF00460 Flagella basal body rod protein XM56_03140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_03145 PF00460 Flagella basal body rod protein XM56_03145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_03150 PF02107 XM56_03150 XM56_03155 PF02119 XM56_03155 XM56_03160 PF10135 XM56_03160 XM56_03165 PF00460 Flagella basal body rod protein XM56_03165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_03170 PF00669 Bacterial flagellin N-terminal helical region XM56_03170 PF00700 Bacterial flagellin C-terminal helical region XM56_03185 PF00486 Transcriptional regulatory protein, C terminal XM56_03190 PF00669 Bacterial flagellin N-terminal helical region XM56_03190 PF00700 Bacterial flagellin C-terminal helical region XM56_03195 PF02465 XM56_03195 XM56_03195 PF07195 XM56_03195 XM56_03195 PF07196 Flagellin hook IN motif XM56_03200 PF02561 Flagellar protein FliS XM56_03210 PF02120 Flagellar hook-length control protein FliK XM56_03215 PF03748 XM56_03215 XM56_03220 PF04539 Sigma-70 region 3 XM56_03220 PF04542 Sigma-70 region 2 XM56_03220 PF04545 Sigma-70, region 4 XM56_03225 PF01618 XM56_03225 XM56_03230 PF00691 OmpA family XM56_03230 PF13677 XM56_03230 XM56_03235 PF05433 XM56_03235 XM56_03240 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XM56_03240 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal XM56_03245 PF13247 4Fe-4S dicluster domain XM56_03255 PF00374 Nickel-dependent hydrogenase XM56_03260 PF01750 Hydrogenase maturation protease XM56_03265 PF11939 Protein of unknown function (DUF3457) XM56_03270 PF01155 Hydrogenase expression/synthesis hypA family XM56_03275 PF02492 CobW/HypB/UreG, nucleotide-binding domain XM56_03280 PF01455 HupF/HypC family XM56_03285 PF01924 Hydrogenase formation hypA family XM56_03290 PF00586 AIR synthase related protein, N-terminal domain XM56_03290 PF02769 AIR synthase related protein, C-terminal domain XM56_03295 PF00708 Acylphosphatase XM56_03295 PF01300 Telomere recombination XM56_03295 PF07503 HypF finger XM56_03300 PF02661 Fic/DOC family XM56_03300 PF08279 HTH domain XM56_03305 PF02110 Hydroxyethylthiazole kinase family XM56_03310 PF11769 XM56_03310 XM56_03315 PF00563 EAL domain XM56_03315 PF00989 PAS fold XM56_03315 PF00990 GGDEF domain XM56_03315 PF05228 XM56_03315 XM56_03320 PF16576 XM56_03320 XM56_03325 PF00873 AcrB/AcrD/AcrF family XM56_03330 PF15977 XM56_03330 XM56_03335 PF00083 Sugar (and other) transporter XM56_03335 PF08946 Osmosensory transporter coiled coil XM56_03345 PF00857 Isochorismatase family XM56_03350 PF01895 PhoU domain XM56_03350 PF02690 XM56_03350 XM56_03355 PF01156 Inosine-uridine preferring nucleoside hydrolase XM56_03360 PF00356 Bacterial regulatory proteins, lacI family XM56_03360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_03365 PF00083 Sugar (and other) transporter XM56_03380 PF00892 EamA-like transporter family XM56_03385 PF00891 O-methyltransferase XM56_03390 PF00891 O-methyltransferase XM56_03395 PF01497 Periplasmic binding protein XM56_03400 PF01032 FecCD transport family XM56_03405 PF01032 FecCD transport family XM56_03410 PF00005 ABC transporter XM56_03415 PF00557 Metallopeptidase family M24 XM56_03420 PF11903 XM56_03420 XM56_03425 PF01979 Amidohydrolase family XM56_03430 PF17090 XM56_03430 XM56_03435 PF13437 HlyD family secretion protein XM56_03435 PF13533 Biotin-lipoyl like XM56_03440 PF04632 XM56_03440 XM56_03445 PF02321 Outer membrane efflux protein XM56_03450 PF01276 Orn/Lys/Arg decarboxylase, major domain XM56_03450 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XM56_03450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XM56_03455 PF13520 Amino acid permease XM56_03465 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family XM56_03470 PF03400 XM56_03470 XM56_03475 PF03811 XM56_03475 XM56_03475 PF12759 XM56_03475 XM56_03480 PF07514 Putative helicase XM56_03480 PF07515 Protein of unknown function (DUF1528) XM56_03495 PF00589 Phage integrase family XM56_03510 PF01276 Orn/Lys/Arg decarboxylase, major domain XM56_03510 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XM56_03510 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XM56_03515 PF01925 XM56_03515 XM56_03520 PF01464 Transglycosylase SLT domain XM56_03520 PF11873 Domain of unknown function (DUF3393) XM56_03525 PF04362 Bacterial Fe(2+) trafficking XM56_03530 PF00633 Helix-hairpin-helix motif XM56_03530 PF00730 HhH-GPD superfamily base excision DNA repair protein XM56_03530 PF10576 Iron-sulfur binding domain of endonuclease III XM56_03530 PF14815 NUDIX domain XM56_03535 PF02390 Putative methyltransferase XM56_03540 PF04320 XM56_03540 XM56_03545 PF04960 Glutaminase XM56_03550 PF11101 XM56_03550 XM56_03555 PF04055 Radical SAM superfamily XM56_03555 PF06969 HemN C-terminal domain XM56_03560 PF01725 Ham1 family XM56_03565 PF02594 Uncharacterised ACR, YggU family COG1872 XM56_03570 PF02325 XM56_03570 XM56_03575 PF03807 NADP oxidoreductase coenzyme F420-dependent XM56_03575 PF14748 Pyrroline-5-carboxylate reductase dimerisation XM56_03580 PF01168 Alanine racemase, N-terminal domain XM56_03585 PF00437 Type II/IV secretion system protein XM56_03590 PF04371 Porphyromonas-type peptidyl-arginine deiminase XM56_03595 PF00795 Carbon-nitrogen hydrolase XM56_03600 PF03652 Uncharacterised protein family (UPF0081) XM56_03605 PF02622 Uncharacterized ACR, COG1678 XM56_03610 PF02951 Prokaryotic glutathione synthetase, N-terminal domain XM56_03610 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain XM56_03615 PF04452 RNA methyltransferase XM56_03620 PF04231 Endonuclease I XM56_03625 PF10263 XM56_03625 XM56_03625 PF17283 XM56_03625 XM56_03630 PF01022 Bacterial regulatory protein, arsR family XM56_03635 PF04143 XM56_03635 XM56_03640 PF04143 XM56_03640 XM56_03645 PF00438 S-adenosylmethionine synthetase, N-terminal domain XM56_03645 PF02772 S-adenosylmethionine synthetase, central domain XM56_03645 PF02773 S-adenosylmethionine synthetase, C-terminal domain XM56_03650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XM56_03655 PF00355 Rieske [2Fe-2S] domain XM56_03660 PF01435 Peptidase family M48 XM56_03665 PF00456 Transketolase, thiamine diphosphate binding domain XM56_03665 PF02779 Transketolase, pyrimidine binding domain XM56_03665 PF02780 Transketolase, C-terminal domain XM56_03670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM56_03670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XM56_03675 PF00162 Phosphoglycerate kinase XM56_03680 PF01116 Fructose-bisphosphate aldolase class-II XM56_03685 PF00102 Protein-tyrosine phosphatase XM56_03690 PF00924 Mechanosensitive ion channel XM56_03690 PF05552 Conserved TM helix XM56_03695 PF01548 XM56_03695 XM56_03695 PF02371 XM56_03695 XM56_03700 PF01810 XM56_03700 XM56_03705 PF04402 Protein of unknown function (DUF541) XM56_03710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_03710 PF03466 LysR substrate binding domain XM56_03715 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) XM56_03720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XM56_03720 PF01842 ACT domain XM56_03720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_03725 PF13518 Helix-turn-helix domain XM56_03750 PF00080 Copper/zinc superoxide dismutase (SODC) XM56_03755 PF04055 Radical SAM superfamily XM56_03755 PF13394 4Fe-4S single cluster domain XM56_03780 PF01242 6-pyruvoyl tetrahydropterin synthase XM56_03785 PF00175 Oxidoreductase NAD-binding domain XM56_03785 PF00258 Flavodoxin XM56_03785 PF00667 FAD binding domain XM56_03790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain XM56_03790 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain XM56_03795 PF01507 Phosphoadenosine phosphosulfate reductase family XM56_03800 PF15919 XM56_03800 XM56_03805 PF07927 YcfA-like protein XM56_03810 PF04389 Peptidase family M28 XM56_03815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_03815 PF10414 Sirohaem synthase dimerisation region XM56_03815 PF13241 Putative NAD(P)-binding XM56_03815 PF14824 Sirohaem biosynthesis protein central XM56_03820 PF01507 Phosphoadenosine phosphosulfate reductase family XM56_03825 PF00009 Elongation factor Tu GTP binding domain XM56_03830 PF01583 Adenylylsulphate kinase XM56_03835 PF12084 XM56_03835 XM56_03840 PF04977 Septum formation initiator XM56_03845 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase XM56_03850 PF02542 YgbB family XM56_03855 PF01142 tRNA pseudouridine synthase D (TruD) XM56_03860 PF01975 Survival protein SurE XM56_03865 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) XM56_03870 PF01476 LysM domain XM56_03870 PF01551 Peptidase family M23 XM56_03875 PF00140 Sigma-70 factor, region 1 XM56_03875 PF04539 Sigma-70 region 3 XM56_03875 PF04542 Sigma-70 region 2 XM56_03875 PF04545 Sigma-70, region 4 XM56_03880 PF00488 MutS domain V XM56_03880 PF01624 MutS domain I XM56_03880 PF05188 MutS domain II XM56_03880 PF05190 MutS family domain IV XM56_03880 PF05192 MutS domain III XM56_03885 PF04932 XM56_03885 XM56_03885 PF11846 XM56_03885 XM56_03885 PF15864 XM56_03885 XM56_03890 PF04703 FaeA-like protein XM56_03895 PF00419 Fimbrial protein XM56_03910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_03910 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_03915 PF00419 Fimbrial protein XM56_03920 PF00419 Fimbrial protein XM56_03925 PF00419 Fimbrial protein XM56_03935 PF15959 XM56_03935 XM56_03940 PF01323 DSBA-like thioredoxin domain XM56_03950 PF00005 ABC transporter XM56_03950 PF00664 ABC transporter transmembrane region XM56_03950 PF03412 Peptidase C39 family XM56_03955 PF16576 XM56_03955 XM56_03960 PF00005 ABC transporter XM56_03960 PF02687 XM56_03960 XM56_03960 PF12704 MacB-like periplasmic core domain XM56_03965 PF02321 Outer membrane efflux protein XM56_03970 PF00109 Beta-ketoacyl synthase, N-terminal domain XM56_03970 PF02801 Beta-ketoacyl synthase, C-terminal domain XM56_03975 PF01575 MaoC like domain XM56_03980 PF00550 Phosphopantetheine attachment site XM56_03985 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_03990 PF01548 XM56_03990 XM56_03990 PF02371 XM56_03990 XM56_03995 PF00155 Aminotransferase class I and II XM56_04000 PF00034 Cytochrome c XM56_04000 PF03150 Di-haem cytochrome c peroxidase XM56_04000 PF14376 XM56_04000 XM56_04005 PF07883 Cupin domain XM56_04010 PF00009 Elongation factor Tu GTP binding domain XM56_04010 PF00679 Elongation factor G C-terminus XM56_04010 PF03144 Elongation factor Tu domain 2 XM56_04010 PF03764 Elongation factor G, domain IV XM56_04010 PF14492 Elongation Factor G, domain II XM56_04015 PF12840 Helix-turn-helix domain XM56_04020 PF00107 Zinc-binding dehydrogenase XM56_04020 PF08240 Alcohol dehydrogenase GroES-like domain XM56_04025 PF03613 XM56_04025 XM56_04030 PF03609 XM56_04030 XM56_04035 PF03830 PTS system sorbose subfamily IIB component XM56_04040 PF03610 PTS system fructose IIA component XM56_04045 PF04198 Putative sugar-binding domain XM56_04045 PF13545 Crp-like helix-turn-helix domain XM56_04050 PF00795 Carbon-nitrogen hydrolase XM56_04055 PF03861 ANTAR domain XM56_04060 PF13433 Periplasmic binding protein domain XM56_04065 PF03069 Acetamidase/Formamidase family XM56_04070 PF00005 ABC transporter XM56_04075 PF00005 ABC transporter XM56_04080 PF02653 XM56_04080 XM56_04085 PF02653 XM56_04085 XM56_04090 PF13433 Periplasmic binding protein domain XM56_04095 PF05681 XM56_04095 XM56_04095 PF05683 Fumarase C-terminus XM56_04100 PF00384 Molybdopterin oxidoreductase XM56_04100 PF01568 Molydopterin dinucleotide binding domain XM56_04100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XM56_04105 PF12800 4Fe-4S binding domain XM56_04105 PF13247 4Fe-4S dicluster domain XM56_04110 PF04976 XM56_04110 XM56_04115 PF02613 Nitrate reductase delta subunit XM56_04120 PF01548 XM56_04120 XM56_04120 PF02371 XM56_04120 XM56_04125 PF07690 Major Facilitator Superfamily XM56_04130 PF02464 Competence-damaged protein XM56_04135 PF00154 recA bacterial DNA recombination protein XM56_04140 PF02631 RecX family XM56_04145 PF01411 tRNA synthetases class II (A) XM56_04145 PF02272 DHHA1 domain XM56_04145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XM56_04150 PF02599 Global regulator protein family XM56_04165 PF13419 Haloacid dehalogenase-like hydrolase XM56_04175 PF04262 Glutamate-cysteine ligase XM56_04180 PF02664 S-Ribosylhomocysteinase (LuxS) XM56_04185 PF01548 XM56_04185 XM56_04185 PF02371 XM56_04185 XM56_04190 PF01595 XM56_04190 XM56_04190 PF03471 Transporter associated domain XM56_04195 PF01578 XM56_04195 XM56_04200 PF00448 SRP54-type protein, GTPase domain XM56_04200 PF02881 SRP54-type protein, helical bundle domain XM56_04200 PF02978 Signal peptide binding domain XM56_04205 PF00886 Ribosomal protein S16 XM56_04210 PF01782 RimM N-terminal domain XM56_04210 PF05239 PRC-barrel domain XM56_04215 PF01746 tRNA (Guanine-1)-methyltransferase XM56_04220 PF01245 Ribosomal protein L19 XM56_04225 PF04338 Protein of unknown function, DUF481 XM56_04230 PF03605 XM56_04230 XM56_04235 PF00072 Response regulator receiver domain XM56_04235 PF04397 LytTr DNA-binding domain XM56_04240 PF00793 DAHP synthetase I family XM56_04245 PF01817 Chorismate mutase type II XM56_04245 PF02153 Prephenate dehydrogenase XM56_04250 PF00800 Prephenate dehydratase XM56_04250 PF01817 Chorismate mutase type II XM56_04255 PF02371 XM56_04255 XM56_04260 PF01548 XM56_04260 XM56_04265 PF00004 ATPase family associated with various cellular activities (AAA) XM56_04265 PF02861 Clp amino terminal domain XM56_04265 PF07724 AAA domain (Cdc48 subfamily) XM56_04265 PF10431 C-terminal, D2-small domain, of ClpB protein XM56_04270 PF02578 Multi-copper polyphenol oxidoreductase laccase XM56_04275 PF00849 RNA pseudouridylate synthase XM56_04275 PF01479 S4 domain XM56_04280 PF13525 Outer membrane lipoprotein XM56_04285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein XM56_04290 PF02371 XM56_04290 XM56_04315 PF10043 XM56_04315 XM56_04320 PF13091 PLD-like domain XM56_04325 PF00583 Acetyltransferase (GNAT) family XM56_04325 PF13380 CoA binding domain XM56_04325 PF13549 ATP-grasp domain XM56_04325 PF13607 Succinyl-CoA ligase like flavodoxin domain XM56_04330 PF03942 XM56_04330 XM56_04335 PF00085 Thioredoxin XM56_04340 PF00588 SpoU rRNA Methylase family XM56_04340 PF08032 RNA 2'-O ribose methyltransferase substrate binding XM56_04345 PF01548 XM56_04345 XM56_04345 PF02371 XM56_04345 XM56_04355 PF07690 Major Facilitator Superfamily XM56_04360 PF00529 HlyD family secretion protein XM56_04360 PF16576 XM56_04360 XM56_04365 PF02321 Outer membrane efflux protein XM56_04370 PF01047 MarR family XM56_04375 PF05437 XM56_04375 XM56_04380 PF03591 XM56_04380 XM56_04385 PF07690 Major Facilitator Superfamily XM56_04390 PF01548 XM56_04390 XM56_04390 PF02371 XM56_04390 XM56_04400 PF11533 Protein of unknown function (DUF3225) XM56_04405 PF01425 Amidase XM56_04410 PF13318 XM56_04410 XM56_04415 PF01380 SIS domain XM56_04415 PF01418 Helix-turn-helix domain, rpiR family XM56_04420 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_04425 PF00528 Binding-protein-dependent transport system inner membrane component XM56_04430 PF00528 Binding-protein-dependent transport system inner membrane component XM56_04435 PF00005 ABC transporter XM56_04440 PF00266 Aminotransferase class-V XM56_04445 PF01546 Peptidase family M20/M25/M40 XM56_04450 PF01548 XM56_04450 XM56_04450 PF02371 XM56_04450 XM56_04455 PF00795 Carbon-nitrogen hydrolase XM56_04460 PF00155 Aminotransferase class I and II XM56_04465 PF00596 Class II Aldolase and Adducin N-terminal domain XM56_04475 PF03079 ARD/ARD' family XM56_04480 PF01008 Initiation factor 2 subunit family XM56_04485 PF01636 Phosphotransferase enzyme family XM56_04490 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XM56_04490 PF08479 POTRA domain, ShlB-type XM56_04505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XM56_04505 PF02770 Acyl-CoA dehydrogenase, middle domain XM56_04505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain XM56_04505 PF09317 XM56_04505 XM56_04510 PF13580 SIS domain XM56_04515 PF13230 Glutamine amidotransferases class-II XM56_04520 PF03734 L,D-transpeptidase catalytic domain XM56_04525 PF05896 XM56_04525 XM56_04525 PF11973 XM56_04525 XM56_04530 PF03116 XM56_04530 XM56_04535 PF04205 FMN-binding domain XM56_04540 PF02508 XM56_04540 XM56_04545 PF02508 XM56_04545 XM56_04550 PF00111 2Fe-2S iron-sulfur cluster binding domain XM56_04550 PF00175 Oxidoreductase NAD-binding domain XM56_04550 PF00970 Oxidoreductase FAD-binding domain XM56_04555 PF02424 ApbE family XM56_04560 PF04400 XM56_04560 XM56_04565 PF03009 Glycerophosphoryl diester phosphodiesterase family XM56_04570 PF01820 D-ala D-ala ligase N-terminus XM56_04570 PF07478 D-ala D-ala ligase C-terminus XM56_04575 PF08348 XM56_04575 XM56_04575 PF13309 XM56_04575 XM56_04580 PF00291 Pyridoxal-phosphate dependent enzyme XM56_04585 PF01042 Endoribonuclease L-PSP XM56_04590 PF00817 impB/mucB/samB family XM56_04590 PF11798 IMS family HHH motif XM56_04590 PF11799 impB/mucB/samB family C-terminal domain XM56_04595 PF01546 Peptidase family M20/M25/M40 XM56_04595 PF07687 Peptidase dimerisation domain XM56_04600 PF00156 Phosphoribosyl transferase domain XM56_04605 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) XM56_04610 PF07417 Transcriptional regulator Crl XM56_04615 PF00696 Amino acid kinase family XM56_04615 PF01472 PUA domain XM56_04620 PF00171 Aldehyde dehydrogenase family XM56_04625 PF00392 Bacterial regulatory proteins, gntR family XM56_04625 PF07702 UTRA domain XM56_04630 PF00367 phosphotransferase system, EIIB XM56_04630 PF02378 Phosphotransferase system, EIIC XM56_04635 PF02056 Family 4 glycosyl hydrolase XM56_04635 PF11975 Family 4 glycosyl hydrolase C-terminal domain XM56_04640 PF07238 PilZ domain XM56_04640 PF07317 Flagellar regulator YcgR XM56_04645 PF06165 Glycosyltransferase family 36 XM56_04645 PF10091 Putative glucoamylase XM56_04645 PF17167 XM56_04645 XM56_04655 PF00583 Acetyltransferase (GNAT) family XM56_04660 PF08241 Methyltransferase domain XM56_04665 PF07338 Protein of unknown function (DUF1471) XM56_04680 PF00593 TonB dependent receptor XM56_04680 PF07715 TonB-dependent Receptor Plug Domain XM56_04685 PF01202 Shikimate kinase XM56_04690 PF06865 Protein of unknown function (DUF1255) XM56_04695 PF04381 Putative exonuclease, RdgC XM56_04700 PF00480 ROK family XM56_04705 PF13476 AAA domain XM56_04705 PF13558 Putative exonuclease SbcCD, C subunit XM56_04710 PF00149 Calcineurin-like phosphoesterase XM56_04710 PF12320 Type 5 capsule protein repressor C-terminal domain XM56_04715 PF00072 Response regulator receiver domain XM56_04715 PF00486 Transcriptional regulatory protein, C terminal XM56_04720 PF00512 His Kinase A (phospho-acceptor) domain XM56_04720 PF00989 PAS fold XM56_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_04720 PF11808 XM56_04720 XM56_04725 PF12849 PBP superfamily domain XM56_04730 PF05525 XM56_04730 XM56_04735 PF00324 Amino acid permease XM56_04740 PF00128 Alpha amylase, catalytic domain XM56_04740 PF02903 Alpha amylase, N-terminal ig-like domain XM56_04745 PF00106 short chain dehydrogenase XM56_04750 PF01019 Gamma-glutamyltranspeptidase XM56_04755 PF01848 XM56_04755 XM56_04760 PF00578 AhpC/TSA family XM56_04760 PF10417 C-terminal domain of 1-Cys peroxiredoxin XM56_04765 PF04336 XM56_04765 XM56_04770 PF02547 Queuosine biosynthesis protein XM56_04775 PF12697 Alpha/beta hydrolase family XM56_04780 PF01548 XM56_04780 XM56_04780 PF02371 XM56_04780 XM56_04785 PF01702 Queuine tRNA-ribosyltransferase XM56_04790 PF02699 Preprotein translocase subunit XM56_04795 PF02355 Protein export membrane protein XM56_04795 PF07549 SecD/SecF GG Motif XM56_04795 PF13721 SecD export protein N-terminal TM region XM56_04800 PF02355 Protein export membrane protein XM56_04800 PF07549 SecD/SecF GG Motif XM56_04805 PF01548 XM56_04805 XM56_04805 PF02371 XM56_04805 XM56_04820 PF03477 ATP cone domain XM56_04825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XM56_04825 PF01872 RibD C-terminal domain XM56_04830 PF00885 6,7-dimethyl-8-ribityllumazine synthase XM56_04835 PF01029 NusB family XM56_04840 PF00586 AIR synthase related protein, N-terminal domain XM56_04840 PF02769 AIR synthase related protein, C-terminal domain XM56_04845 PF04608 Phosphatidylglycerophosphatase A XM56_04850 PF01548 XM56_04850 XM56_04850 PF02371 XM56_04850 XM56_04855 PF02779 Transketolase, pyrimidine binding domain XM56_04855 PF02780 Transketolase, C-terminal domain XM56_04855 PF13292 1-deoxy-D-xylulose-5-phosphate synthase XM56_04860 PF00348 Polyprenyl synthetase XM56_04865 PF02609 Exonuclease VII small subunit XM56_04870 PF02568 Thiamine biosynthesis protein (ThiI) XM56_04870 PF02926 THUMP domain XM56_04875 PF01965 DJ-1/PfpI family XM56_04880 PF02558 Ketopantoate reductase PanE/ApbA XM56_04880 PF08546 Ketopantoate reductase PanE/ApbA C terminal XM56_04885 PF04461 Protein of unknown function (DUF520) XM56_04890 PF07690 Major Facilitator Superfamily XM56_04895 PF01040 UbiA prenyltransferase family XM56_04900 PF03626 XM56_04900 XM56_04905 PF00510 Cytochrome c oxidase subunit III XM56_04910 PF00115 Cytochrome C and Quinol oxidase polypeptide I XM56_04915 PF00116 Cytochrome C oxidase subunit II, periplasmic domain XM56_04915 PF06481 COX Aromatic Rich Motif XM56_04920 PF03502 Nucleoside-specific channel-forming protein, Tsx XM56_04925 PF07690 Major Facilitator Superfamily XM56_04930 PF03923 XM56_04930 XM56_04930 PF08139 XM56_04930 XM56_04935 PF01722 BolA-like protein XM56_04945 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XM56_04945 PF05697 Bacterial trigger factor protein (TF) XM56_04945 PF05698 Bacterial trigger factor protein (TF) C-terminus XM56_04950 PF00574 Clp protease XM56_04955 PF06689 ClpX C4-type zinc finger XM56_04955 PF07724 AAA domain (Cdc48 subfamily) XM56_04955 PF10431 C-terminal, D2-small domain, of ClpB protein XM56_04960 PF00004 ATPase family associated with various cellular activities (AAA) XM56_04960 PF02190 ATP-dependent protease La (LON) domain XM56_04960 PF05362 Lon protease (S16) C-terminal proteolytic domain XM56_04965 PF00216 Bacterial DNA-binding protein XM56_04970 PF13145 PPIC-type PPIASE domain XM56_04970 PF13624 SurA N-terminal domain XM56_04975 PF12836 Helix-hairpin-helix motif XM56_04980 PF13279 Thioesterase-like superfamily XM56_04985 PF06508 Queuosine biosynthesis protein QueC XM56_04990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_04990 PF12793 XM56_04990 XM56_04995 PF08282 haloacid dehalogenase-like hydrolase XM56_05000 PF00291 Pyridoxal-phosphate dependent enzyme XM56_05005 PF01037 AsnC family XM56_05005 PF13412 Winged helix-turn-helix DNA-binding XM56_05010 PF00005 ABC transporter XM56_05010 PF00664 ABC transporter transmembrane region XM56_05015 PF00005 ABC transporter XM56_05015 PF00664 ABC transporter transmembrane region XM56_05020 PF00543 Nitrogen regulatory protein P-II XM56_05025 PF00909 Ammonium Transporter Family XM56_05030 PF13622 Thioesterase-like superfamily XM56_05035 PF09619 Type III secretion system lipoprotein chaperone (YscW) XM56_05040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XM56_05045 PF05321 Haemolysin expression modulating protein XM56_05050 PF10757 XM56_05050 XM56_05060 PF00005 ABC transporter XM56_05065 PF00950 XM56_05065 XM56_05070 PF01297 Periplasmic solute binding protein family XM56_05075 PF00444 Ribosomal protein L36 XM56_05080 PF01197 Ribosomal protein L31 XM56_05085 PF10797 XM56_05085 XM56_05090 PF10941 XM56_05090 XM56_05095 PF01676 Metalloenzyme superfamily XM56_05100 PF01168 Alanine racemase, N-terminal domain XM56_05105 PF00874 PRD domain XM56_05110 PF00873 AcrB/AcrD/AcrF family XM56_05115 PF00529 HlyD family secretion protein XM56_05115 PF16576 XM56_05115 XM56_05120 PF00440 Bacterial regulatory proteins, tetR family XM56_05120 PF08361 MAATS-type transcriptional repressor, C-terminal region XM56_05125 PF02635 DsrE/DsrF-like family XM56_05130 PF00924 Mechanosensitive ion channel XM56_05130 PF12794 XM56_05130 XM56_05130 PF12795 XM56_05130 XM56_05135 PF10689 XM56_05135 XM56_05140 PF07445 Primosomal replication protein priB and priC XM56_05145 PF04304 XM56_05145 XM56_05150 PF00156 Phosphoribosyl transferase domain XM56_05155 PF12168 XM56_05155 XM56_05155 PF12169 DNA polymerase III subunits gamma and tau domain III XM56_05155 PF12170 DNA polymerase III tau subunit V interacting with alpha XM56_05155 PF13177 DNA polymerase III, delta subunit XM56_05160 PF02575 YbaB/EbfC DNA-binding family XM56_05165 PF02132 RecR protein XM56_05165 PF13662 Toprim domain XM56_05170 PF00183 Hsp90 protein XM56_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_05175 PF00406 Adenylate kinase XM56_05175 PF05191 Adenylate kinase, active site lid XM56_05180 PF00762 Ferrochelatase XM56_05185 PF01943 XM56_05185 XM56_05190 PF00535 Glycosyl transferase family 2 XM56_05195 PF00535 Glycosyl transferase family 2 XM56_05200 PF00534 Glycosyl transferases group 1 XM56_05200 PF13439 Glycosyltransferase Family 4 XM56_05205 PF00534 Glycosyl transferases group 1 XM56_05205 PF13439 Glycosyltransferase Family 4 XM56_05210 PF00953 Glycosyl transferase family 4 XM56_05215 PF02719 Polysaccharide biosynthesis protein XM56_05220 PF00534 Glycosyl transferases group 1 XM56_05220 PF13439 Glycosyltransferase Family 4 XM56_05225 PF01370 NAD dependent epimerase/dehydratase family XM56_05230 PF00294 pfkB family carbohydrate kinase XM56_05235 PF00999 Sodium/hydrogen exchanger family XM56_05235 PF02254 TrkA-N domain XM56_05240 PF07690 Major Facilitator Superfamily XM56_05245 PF00149 Calcineurin-like phosphoesterase XM56_05245 PF02872 5'-nucleotidase, C-terminal domain XM56_05255 PF04073 Aminoacyl-tRNA editing domain XM56_05260 PF01963 XM56_05260 XM56_05265 PF00122 E1-E2 ATPase XM56_05265 PF00403 Heavy-metal-associated domain XM56_05265 PF00702 haloacid dehalogenase-like hydrolase XM56_05270 PF13411 MerR HTH family regulatory protein XM56_05275 PF01957 NfeD-like C-terminal, partner-binding XM56_05280 PF01145 SPFH domain / Band 7 family XM56_05285 PF00085 Thioredoxin XM56_05285 PF14559 Tetratricopeptide repeat XM56_05285 PF14561 Tetratricopeptide repeat XM56_05290 PF00106 short chain dehydrogenase XM56_05295 PF13472 GDSL-like Lipase/Acylhydrolase family XM56_05300 PF00005 ABC transporter XM56_05305 PF02687 XM56_05305 XM56_05310 PF02222 ATP-grasp domain XM56_05315 PF00731 AIR carboxylase XM56_05320 PF00149 Calcineurin-like phosphoesterase XM56_05325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD XM56_05330 PF01406 tRNA synthetases class I (C) catalytic domain XM56_05330 PF09190 DALR domain XM56_05335 PF13275 S4 domain XM56_05340 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain XM56_05340 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain XM56_05355 PF01695 IstB-like ATP binding protein XM56_05360 PF00665 Integrase core domain XM56_05370 PF00072 Response regulator receiver domain XM56_05370 PF00486 Transcriptional regulatory protein, C terminal XM56_05375 PF01738 Dienelactone hydrolase family XM56_05380 PF01548 XM56_05380 XM56_05380 PF02371 XM56_05380 XM56_05390 PF08007 Cupin superfamily protein XM56_05395 PF00221 Aromatic amino acid lyase XM56_05400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase XM56_05405 PF00005 ABC transporter XM56_05405 PF00664 ABC transporter transmembrane region XM56_05410 PF03992 Antibiotic biosynthesis monooxygenase XM56_05415 PF08971 Glycogen synthesis protein XM56_05420 PF00149 Calcineurin-like phosphoesterase XM56_05430 PF00196 Bacterial regulatory proteins, luxR family XM56_05435 PF00313 'Cold-shock' DNA-binding domain XM56_05440 PF00313 'Cold-shock' DNA-binding domain XM56_05445 PF02537 XM56_05445 XM56_05450 PF00990 GGDEF domain XM56_05450 PF05230 XM56_05450 XM56_05455 PF02416 mttA/Hcf106 family XM56_05460 PF04055 Radical SAM superfamily XM56_05460 PF16881 XM56_05460 XM56_05465 PF03099 Biotin/lipoate A/B protein ligase family XM56_05470 PF04359 Protein of unknown function (DUF493) XM56_05475 PF00768 D-alanyl-D-alanine carboxypeptidase XM56_05475 PF07943 Penicillin-binding protein 5, C-terminal domain XM56_05480 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel XM56_05480 PF05036 Sporulation related domain XM56_05485 PF01098 XM56_05485 XM56_05490 PF00905 Penicillin binding protein transpeptidase domain XM56_05490 PF03717 Penicillin-binding Protein dimerisation domain XM56_05495 PF02590 Predicted SPOUT methyltransferase XM56_05500 PF02410 Oligomerisation domain XM56_05505 PF01467 Cytidylyltransferase XM56_05510 PF06144 DNA polymerase III, delta subunit XM56_05510 PF14840 Processivity clamp loader gamma complex DNA pol III C-term XM56_05515 PF04390 Lipopolysaccharide-assembly XM56_05520 PF00133 tRNA synthetases class I (I, L, M and V) XM56_05520 PF08264 Anticodon-binding domain of tRNA XM56_05520 PF13603 Leucyl-tRNA synthetase, Domain 2 XM56_05525 PF07295 XM56_05525 XM56_05530 PF00005 ABC transporter XM56_05535 PF00528 Binding-protein-dependent transport system inner membrane component XM56_05540 PF00528 Binding-protein-dependent transport system inner membrane component XM56_05545 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_05550 PF01243 Pyridoxamine 5'-phosphate oxidase XM56_05555 PF00795 Carbon-nitrogen hydrolase XM56_05560 PF00571 CBS domain XM56_05560 PF03471 Transporter associated domain XM56_05565 PF02130 Uncharacterized protein family UPF0054 XM56_05570 PF02562 PhoH-like protein XM56_05575 PF00919 Uncharacterized protein family UPF0004 XM56_05575 PF01938 TRAM domain XM56_05575 PF04055 Radical SAM superfamily XM56_05580 PF01494 FAD binding domain XM56_05595 PF00733 Asparagine synthase XM56_05595 PF13537 Glutamine amidotransferase domain XM56_05600 PF13242 HAD-hyrolase-like XM56_05600 PF13344 Haloacid dehalogenase-like hydrolase XM56_05605 PF00480 ROK family XM56_05605 PF01047 MarR family XM56_05610 PF01979 Amidohydrolase family XM56_05615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase XM56_05620 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XM56_05620 PF00367 phosphotransferase system, EIIB XM56_05620 PF02378 Phosphotransferase system, EIIC XM56_05625 PF00749 tRNA synthetases class I (E and Q), catalytic domain XM56_05625 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain XM56_05630 PF03573 outer membrane porin, OprD family XM56_05635 PF13982 XM56_05635 XM56_05645 PF01475 Ferric uptake regulator family XM56_05650 PF00258 Flavodoxin XM56_05655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_05655 PF02203 Tar ligand binding domain homologue XM56_05660 PF01402 Ribbon-helix-helix protein, copG family XM56_05665 PF12697 Alpha/beta hydrolase family XM56_05670 PF03925 SeqA protein XM56_05670 PF17206 XM56_05670 XM56_05675 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XM56_05675 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XM56_05675 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XM56_05675 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XM56_05680 PF00353 Hemolysin-type calcium-binding repeat (2 copies) XM56_05685 PF00892 EamA-like transporter family XM56_05690 PF00072 Response regulator receiver domain XM56_05690 PF00486 Transcriptional regulatory protein, C terminal XM56_05695 PF00512 His Kinase A (phospho-acceptor) domain XM56_05695 PF00582 Universal stress protein family XM56_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_05695 PF02702 Osmosensitive K+ channel His kinase sensor domain XM56_05695 PF13492 GAF domain XM56_05695 PF13493 Domain of unknown function (DUF4118) XM56_05700 PF02669 XM56_05700 XM56_05705 PF00122 E1-E2 ATPase XM56_05705 PF00702 haloacid dehalogenase-like hydrolase XM56_05710 PF03814 XM56_05710 XM56_05715 PF09604 XM56_05715 XM56_05720 PF10725 XM56_05720 XM56_05730 PF02794 XM56_05730 XM56_05735 PF03543 Yersinia/Haemophilus virulence surface antigen XM56_05735 PF07634 XM56_05735 XM56_05735 PF11713 Peptidase C80 family XM56_05740 PF08349 XM56_05740 XM56_05745 PF00875 DNA photolyase XM56_05745 PF03441 FAD binding domain of DNA photolyase XM56_05750 PF02112 XM56_05750 XM56_05755 PF01784 NIF3 (NGG1p interacting factor 3) XM56_05760 PF02682 Allophanate hydrolase subunit 1 XM56_05765 PF02626 Allophanate hydrolase subunit 2 XM56_05770 PF03746 LamB/YcsF family XM56_05775 PF06149 XM56_05775 XM56_05780 PF06166 XM56_05780 XM56_05785 PF01470 Pyroglutamyl peptidase XM56_05790 PF00285 Citrate synthase XM56_05795 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit XM56_05805 PF00890 FAD binding domain XM56_05805 PF02910 Fumarate reductase flavoprotein C-term XM56_05810 PF13085 2Fe-2S iron-sulfur cluster binding domain XM56_05810 PF13534 4Fe-4S dicluster domain XM56_05815 PF00676 Dehydrogenase E1 component XM56_05815 PF02779 Transketolase, pyrimidine binding domain XM56_05815 PF16078 XM56_05815 XM56_05815 PF16870 XM56_05815 XM56_05820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XM56_05820 PF00364 Biotin-requiring enzyme XM56_05820 PF02817 e3 binding domain XM56_05825 PF00549 CoA-ligase XM56_05825 PF08442 ATP-grasp domain XM56_05830 PF00549 CoA-ligase XM56_05830 PF02629 CoA binding domain XM56_05835 PF01548 XM56_05835 XM56_05835 PF02371 XM56_05835 XM56_05840 PF00149 Calcineurin-like phosphoesterase XM56_05840 PF02872 5'-nucleotidase, C-terminal domain XM56_05845 PF01654 XM56_05845 XM56_05850 PF02322 XM56_05850 XM56_05855 PF08173 XM56_05855 XM56_05860 PF09600 XM56_05860 XM56_05865 PF03061 Thioesterase superfamily XM56_05870 PF01618 XM56_05870 XM56_05875 PF02472 Biopolymer transport protein ExbD/TolR XM56_05880 PF06519 TolA C-terminal XM56_05885 PF04052 TolB amino-terminal domain XM56_05885 PF07676 WD40-like Beta Propeller Repeat XM56_05890 PF00691 OmpA family XM56_05895 PF13174 Tetratricopeptide repeat XM56_05895 PF13432 Tetratricopeptide repeat XM56_05895 PF16331 XM56_05895 XM56_05905 PF00589 Phage integrase family XM56_05910 PF02445 Quinolinate synthetase A protein XM56_05915 PF04973 XM56_05915 XM56_05920 PF01545 Cation efflux family XM56_05925 PF00793 DAHP synthetase I family XM56_05930 PF00300 Histidine phosphatase superfamily (branch 1) XM56_05935 PF01223 DNA/RNA non-specific endonuclease XM56_05945 PF00082 Subtilase family XM56_05950 PF07769 XM56_05950 XM56_05955 PF01263 Aldose 1-epimerase XM56_05960 PF00288 GHMP kinases N terminal domain XM56_05960 PF08544 GHMP kinases C terminal XM56_05960 PF10509 Galactokinase galactose-binding signature XM56_05965 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain XM56_05965 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain XM56_05970 PF16363 XM56_05970 XM56_05975 PF02517 CAAX protease self-immunity XM56_05980 PF00005 ABC transporter XM56_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_05985 PF03459 TOBE domain XM56_05990 PF10766 Protein of unknown function (DUF2592) XM56_05995 PF13531 Bacterial extracellular solute-binding protein XM56_06000 PF00589 Phage integrase family XM56_06000 PF13356 Domain of unknown function (DUF4102) XM56_06005 PF05930 Prophage CP4-57 regulatory protein (AlpA) XM56_06010 PF00176 SNF2 family N-terminal domain XM56_06025 PF06069 XM56_06025 XM56_06030 PF00476 DNA polymerase family A XM56_06035 PF10065 XM56_06035 XM56_06045 PF10991 Protein of unknown function (DUF2815) XM56_06050 PF10926 XM56_06050 XM56_06060 PF00717 Peptidase S24-like XM56_06060 PF13443 Cro/C1-type HTH DNA-binding domain XM56_06065 PF01381 Helix-turn-helix XM56_06070 PF05272 XM56_06070 XM56_06070 PF09250 Bifunctional DNA primase/polymerase, N-terminal XM56_06090 PF12236 Bacteriophage head to tail connecting protein XM56_06110 PF17212 XM56_06110 XM56_06120 PF00583 Acetyltransferase (GNAT) family XM56_06165 PF03906 XM56_06165 XM56_06170 PF02413 XM56_06170 XM56_06180 PF00959 Phage lysozyme XM56_06185 PF03245 XM56_06185 XM56_06190 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06195 PF00005 ABC transporter XM56_06195 PF03459 TOBE domain XM56_06200 PF08282 haloacid dehalogenase-like hydrolase XM56_06205 PF10282 Lactonase, 7-bladed beta-propeller XM56_06210 PF00202 Aminotransferase class-III XM56_06215 PF04055 Radical SAM superfamily XM56_06215 PF06968 Biotin and Thiamin Synthesis associated domain XM56_06220 PF00155 Aminotransferase class I and II XM56_06225 PF08241 Methyltransferase domain XM56_06230 PF13500 AAA domain XM56_06235 PF00005 ABC transporter XM56_06240 PF00271 Helicase conserved C-terminal domain XM56_06240 PF02151 UvrB/uvrC motif XM56_06240 PF04851 Type III restriction enzyme, res subunit XM56_06240 PF12344 Ultra-violet resistance protein B XM56_06245 PF09905 Uncharacterized conserved protein (DUF2132) XM56_06250 PF01933 Uncharacterised protein family UPF0052 XM56_06255 PF04055 Radical SAM superfamily XM56_06255 PF06463 Molybdenum Cofactor Synthesis C XM56_06255 PF13353 4Fe-4S single cluster domain XM56_06260 PF01967 MoaC family XM56_06265 PF02597 ThiS family XM56_06270 PF02391 MoaE protein XM56_06275 PF01027 Inhibitor of apoptosis-promoting Bax1 XM56_06280 PF12698 ABC-2 family transporter protein XM56_06285 PF12698 ABC-2 family transporter protein XM56_06290 PF00005 ABC transporter XM56_06295 PF16576 XM56_06295 XM56_06300 PF00440 Bacterial regulatory proteins, tetR family XM56_06300 PF09209 Domain of unknown function (DUF1956) XM56_06305 PF00270 DEAD/DEAH box helicase XM56_06305 PF00271 Helicase conserved C-terminal domain XM56_06310 PF01207 Dihydrouridine synthase (Dus) XM56_06320 PF00571 CBS domain XM56_06320 PF01769 Divalent cation transporter XM56_06330 PF00768 D-alanyl-D-alanine carboxypeptidase XM56_06335 PF01565 FAD binding domain XM56_06335 PF09330 D-lactate dehydrogenase, membrane binding XM56_06340 PF01928 CYTH domain XM56_06345 PF01844 HNH endonuclease XM56_06350 PF05076 Suppressor of fused protein (SUFU) XM56_06355 PF04226 XM56_06355 XM56_06360 PF00005 ABC transporter XM56_06365 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein XM56_06370 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06375 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06380 PF07308 XM56_06380 XM56_06385 PF13433 Periplasmic binding protein domain XM56_06390 PF02653 XM56_06390 XM56_06390 PF13646 HEAT repeats XM56_06395 PF02653 XM56_06395 XM56_06400 PF00005 ABC transporter XM56_06400 PF12399 Branched-chain amino acid ATP-binding cassette transporter XM56_06405 PF00005 ABC transporter XM56_06410 PF00581 Rhodanese-like domain XM56_06415 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XM56_06415 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XM56_06420 PF00487 XM56_06420 XM56_06425 PF04069 Substrate binding domain of ABC-type glycine betaine transport system XM56_06430 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06435 PF00005 ABC transporter XM56_06440 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06445 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein XM56_06450 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_06455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_06455 PF03466 LysR substrate binding domain XM56_06465 PF00892 EamA-like transporter family XM56_06470 PF05426 Alginate lyase XM56_06475 PF00267 Gram-negative porin XM56_06480 PF06733 DEAD_2 XM56_06480 PF13307 Helicase C-terminal domain XM56_06485 PF00230 Major intrinsic protein XM56_06490 PF02885 Glycosyl transferase family, helical bundle domain XM56_06495 PF01432 Peptidase family M3 XM56_06500 PF07338 Protein of unknown function (DUF1471) XM56_06505 PF01613 Flavin reductase like domain XM56_06510 PF05971 Protein of unknown function (DUF890) XM56_06515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_06515 PF08447 PAS fold XM56_06520 PF00005 ABC transporter XM56_06525 PF00528 Binding-protein-dependent transport system inner membrane component XM56_06530 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_06535 PF01258 Prokaryotic dksA/traR C4-type zinc finger XM56_06540 PF00210 Ferritin-like domain XM56_06545 PF13649 Methyltransferase domain XM56_06550 PF10099 XM56_06550 XM56_06555 PF04542 Sigma-70 region 2 XM56_06555 PF08281 Sigma-70, region 4 XM56_06560 PF02469 Fasciclin domain XM56_06565 PF00583 Acetyltransferase (GNAT) family XM56_06570 PF00892 EamA-like transporter family XM56_06580 PF13505 Outer membrane protein beta-barrel domain XM56_06585 PF12697 Alpha/beta hydrolase family XM56_06590 PF01545 Cation efflux family XM56_06595 PF01321 Creatinase/Prolidase N-terminal domain XM56_06600 PF00005 ABC transporter XM56_06600 PF12848 ABC transporter XM56_06605 PF01548 XM56_06605 XM56_06605 PF02371 XM56_06605 XM56_06610 PF00899 ThiF family XM56_06615 PF00994 Probable molybdopterin binding domain XM56_06615 PF03453 MoeA N-terminal region (domain I and II) XM56_06615 PF03454 MoeA C-terminal region (domain IV) XM56_06620 PF06041 Bacterial protein of unknown function (DUF924) XM56_06625 PF04055 Radical SAM superfamily XM56_06630 PF00005 ABC transporter XM56_06635 PF13437 HlyD family secretion protein XM56_06650 PF00756 Putative esterase XM56_06655 PF00107 Zinc-binding dehydrogenase XM56_06655 PF08240 Alcohol dehydrogenase GroES-like domain XM56_06660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_06660 PF03466 LysR substrate binding domain XM56_06665 PF06779 XM56_06665 XM56_06670 PF01227 GTP cyclohydrolase I XM56_06675 PF04235 XM56_06675 XM56_06680 PF00356 Bacterial regulatory proteins, lacI family XM56_06680 PF13377 Periplasmic binding protein-like domain XM56_06685 PF13407 Periplasmic binding protein domain XM56_06690 PF00005 ABC transporter XM56_06695 PF02653 XM56_06695 XM56_06700 PF00158 Sigma-54 interaction domain XM56_06700 PF01590 GAF domain XM56_06705 PF00384 Molybdopterin oxidoreductase XM56_06705 PF01568 Molydopterin dinucleotide binding domain XM56_06705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XM56_06710 PF00037 4Fe-4S binding domain XM56_06710 PF12800 4Fe-4S binding domain XM56_06715 PF01750 Hydrogenase maturation protease XM56_06720 PF07450 XM56_06720 XM56_06725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XM56_06730 PF12838 4Fe-4S dicluster domain XM56_06735 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XM56_06735 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XM56_06735 PF00374 Nickel-dependent hydrogenase XM56_06740 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_06740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XM56_06745 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XM56_06750 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_06750 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XM56_06755 PF00146 NADH dehydrogenase XM56_06760 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_06765 PF00037 4Fe-4S binding domain XM56_06765 PF12798 4Fe-4S binding domain XM56_06770 PF01155 Hydrogenase expression/synthesis hypA family XM56_06775 PF01455 HupF/HypC family XM56_06780 PF02698 DUF218 domain XM56_06785 PF00390 Malic enzyme, N-terminal domain XM56_06785 PF03949 Malic enzyme, NAD binding domain XM56_06795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region XM56_06795 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region XM56_06800 PF04172 XM56_06800 XM56_06805 PF03788 XM56_06805 XM56_06810 PF07690 Major Facilitator Superfamily XM56_06815 PF08309 XM56_06815 XM56_06820 PF13407 Periplasmic binding protein domain XM56_06830 PF01588 Putative tRNA binding domain XM56_06830 PF09334 tRNA synthetases class I (M) XM56_06835 PF10609 ParA/MinD ATPase like XM56_06840 PF00485 Phosphoribulokinase / Uridine kinase family XM56_06845 PF00692 dUTPase XM56_06850 PF05170 XM56_06850 XM56_06850 PF13502 XM56_06850 XM56_06855 PF03606 XM56_06855 XM56_06860 PF00571 CBS domain XM56_06860 PF03471 Transporter associated domain XM56_06860 PF03741 XM56_06860 XM56_06865 PF00483 Nucleotidyl transferase XM56_06865 PF01050 Mannose-6-phosphate isomerase XM56_06870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XM56_06870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XM56_06870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XM56_06870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XM56_06875 PF00483 Nucleotidyl transferase XM56_06880 PF00483 Nucleotidyl transferase XM56_06885 PF16363 XM56_06885 XM56_06890 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XM56_06900 PF00005 ABC transporter XM56_06910 PF00534 Glycosyl transferases group 1 XM56_06915 PF00551 Formyl transferase XM56_06920 PF00534 Glycosyl transferases group 1 XM56_06920 PF13439 Glycosyltransferase Family 4 XM56_06925 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain XM56_06925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase XM56_06930 PF01502 Phosphoribosyl-AMP cyclohydrolase XM56_06930 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase XM56_06935 PF00977 Histidine biosynthesis protein XM56_06940 PF00977 Histidine biosynthesis protein XM56_06945 PF00117 Glutamine amidotransferase class-I XM56_06950 PF00475 Imidazoleglycerol-phosphate dehydratase XM56_06950 PF08645 Polynucleotide kinase 3 phosphatase XM56_06955 PF00155 Aminotransferase class I and II XM56_06960 PF00815 Histidinol dehydrogenase XM56_06965 PF01634 ATP phosphoribosyltransferase XM56_06965 PF08029 HisG, C-terminal domain XM56_06970 PF13460 NADH(P)-binding XM56_06975 PF01548 XM56_06975 XM56_06975 PF02371 XM56_06975 XM56_06980 PF02653 XM56_06980 XM56_06985 PF00005 ABC transporter XM56_07000 PF13520 Amino acid permease XM56_07005 PF00929 Exonuclease XM56_07005 PF08411 Exonuclease C-terminal XM56_07010 PF07993 Male sterility protein XM56_07015 PF13515 XM56_07015 XM56_07020 PF04363 XM56_07020 XM56_07025 PF02653 XM56_07025 XM56_07030 PF02653 XM56_07030 XM56_07035 PF00005 ABC transporter XM56_07040 PF13407 Periplasmic binding protein domain XM56_07045 PF00288 GHMP kinases N terminal domain XM56_07050 PF00155 Aminotransferase class I and II XM56_07055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_07060 PF00871 Acetokinase family XM56_07065 PF10662 Ethanolamine utilisation - propanediol utilisation XM56_07070 PF00936 BMC domain XM56_07075 PF00936 BMC domain XM56_07080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XM56_07080 PF10531 SLBB domain XM56_07080 PF13375 RnfC Barrel sandwich hybrid domain XM56_07080 PF13534 4Fe-4S dicluster domain XM56_07085 PF00465 Iron-containing alcohol dehydrogenase XM56_07090 PF00171 Aldehyde dehydrogenase family XM56_07095 PF01923 Cobalamin adenosyltransferase XM56_07095 PF03928 Domain of unknown function (DUF336) XM56_07100 PF03319 Ethanolamine utilisation protein EutN/carboxysome XM56_07105 PF15953 XM56_07105 XM56_07110 PF06130 XM56_07110 XM56_07115 PF00936 BMC domain XM56_07120 PF00936 BMC domain XM56_07125 PF02288 Dehydratase medium subunit XM56_07130 PF08841 Diol dehydratase reactivase ATPase-like domain XM56_07135 PF02287 Dehydratase small subunit XM56_07140 PF02288 Dehydratase medium subunit XM56_07145 PF02286 Dehydratase large subunit XM56_07150 PF00936 BMC domain XM56_07155 PF00936 BMC domain XM56_07160 PF00230 Major intrinsic protein XM56_07165 PF10114 XM56_07165 XM56_07165 PF12833 Helix-turn-helix domain XM56_07170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XM56_07170 PF07685 CobB/CobQ-like glutamine amidotransferase domain XM56_07175 PF03186 XM56_07175 XM56_07180 PF02570 Precorrin-8X methylmutase XM56_07185 PF01888 CbiD XM56_07190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_07195 PF13847 Methyltransferase domain XM56_07200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_07205 PF01890 Cobalamin synthesis G C-terminus XM56_07205 PF11760 Cobalamin synthesis G N-terminal XM56_07205 PF11761 XM56_07205 XM56_07210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_07215 PF02571 XM56_07215 XM56_07220 PF06180 Cobalt chelatase (CbiK) XM56_07225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases XM56_07230 PF01891 Cobalt uptake substrate-specific transmembrane region XM56_07235 PF02553 XM56_07235 XM56_07240 PF02361 Cobalt transport protein XM56_07245 PF00005 ABC transporter XM56_07250 PF07685 CobB/CobQ-like glutamine amidotransferase domain XM56_07250 PF13500 AAA domain XM56_07255 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase XM56_07260 PF02654 XM56_07260 XM56_07265 PF00300 Histidine phosphatase superfamily (branch 1) XM56_07270 PF02277 Phosphoribosyltransferase XM56_07285 PF00196 Bacterial regulatory proteins, luxR family XM56_07290 PF08786 Domain of unknown function (DUF1795) XM56_07295 PF00691 OmpA family XM56_07305 PF11397 XM56_07305 XM56_07310 PF00419 Fimbrial protein XM56_07315 PF06812 XM56_07315 XM56_07320 PF06996 XM56_07320 XM56_07325 PF05947 XM56_07325 XM56_07330 PF00004 ATPase family associated with various cellular activities (AAA) XM56_07330 PF07724 AAA domain (Cdc48 subfamily) XM56_07330 PF10431 C-terminal, D2-small domain, of ClpB protein XM56_07335 PF16970 XM56_07335 XM56_07340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_07340 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_07350 PF00419 Fimbrial protein XM56_07355 PF05591 XM56_07355 XM56_07360 PF05943 XM56_07360 XM56_07365 PF05638 Protein of unknown function (DUF796) XM56_07370 PF12790 Type VI secretion lipoprotein XM56_07375 PF05936 XM56_07375 XM56_07380 PF00691 OmpA family XM56_07380 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) XM56_07385 PF06744 XM56_07385 XM56_07385 PF06761 XM56_07385 XM56_07385 PF14331 XM56_07385 XM56_07390 PF05954 Phage late control gene D protein (GPD) XM56_07395 PF05488 PAAR motif XM56_07405 PF07024 ImpE protein XM56_07410 PF04965 Gene 25-like lysozyme XM56_07415 PF00764 Arginosuccinate synthase XM56_07420 PF01554 MatE XM56_07435 PF08282 haloacid dehalogenase-like hydrolase XM56_07440 PF00455 XM56_07440 XM56_07440 PF08220 DeoR-like helix-turn-helix domain XM56_07445 PF00144 Beta-lactamase XM56_07450 PF00072 Response regulator receiver domain XM56_07450 PF01584 CheW-like domain XM56_07455 PF00440 Bacterial regulatory proteins, tetR family XM56_07460 PF00155 Aminotransferase class I and II XM56_07460 PF00392 Bacterial regulatory proteins, gntR family XM56_07465 PF00583 Acetyltransferase (GNAT) family XM56_07470 PF02558 Ketopantoate reductase PanE/ApbA XM56_07470 PF08546 Ketopantoate reductase PanE/ApbA C terminal XM56_07480 PF00005 ABC transporter XM56_07480 PF08402 TOBE domain XM56_07485 PF00528 Binding-protein-dependent transport system inner membrane component XM56_07490 PF13343 Bacterial extracellular solute-binding protein XM56_07495 PF07690 Major Facilitator Superfamily XM56_07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_07500 PF05231 XM56_07500 XM56_07500 PF07730 Histidine kinase XM56_07505 PF00072 Response regulator receiver domain XM56_07505 PF00196 Bacterial regulatory proteins, luxR family XM56_07510 PF00072 Response regulator receiver domain XM56_07510 PF12431 XM56_07510 XM56_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_07515 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain XM56_07515 PF17203 XM56_07515 XM56_07525 PF06857 XM56_07525 XM56_07530 PF03328 HpcH/HpaI aldolase/citrate lyase family XM56_07535 PF04223 Citrate lyase, alpha subunit (CitF) XM56_07540 PF03802 XM56_07540 XM56_07545 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase XM56_07550 PF00939 Sodium:sulfate symporter transmembrane region XM56_07555 PF06808 XM56_07555 XM56_07560 PF04290 XM56_07560 XM56_07565 PF03480 Bacterial extracellular solute-binding protein, family 7 XM56_07575 PF01648 4'-phosphopantetheinyl transferase superfamily XM56_07580 PF05118 Aspartyl/Asparaginyl beta-hydroxylase XM56_07585 PF00083 Sugar (and other) transporter XM56_07590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_07595 PF09831 XM56_07595 XM56_07600 PF00849 RNA pseudouridylate synthase XM56_07615 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_07615 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_07620 PF00419 Fimbrial protein XM56_07625 PF00577 Outer membrane usher protein XM56_07625 PF13953 PapC C-terminal domain XM56_07625 PF13954 PapC N-terminal domain XM56_07630 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_07630 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_07635 PF00419 Fimbrial protein XM56_07640 PF00072 Response regulator receiver domain XM56_07640 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_07640 PF00512 His Kinase A (phospho-acceptor) domain XM56_07640 PF01627 Hpt domain XM56_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_07645 PF00072 Response regulator receiver domain XM56_07645 PF00196 Bacterial regulatory proteins, luxR family XM56_07655 PF06167 Glucose-regulated metallo-peptidase M90 XM56_07665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XM56_07665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XM56_07670 PF06551 XM56_07670 XM56_07675 PF06551 XM56_07675 XM56_07680 PF06551 XM56_07680 XM56_07685 PF00577 Outer membrane usher protein XM56_07685 PF13953 PapC C-terminal domain XM56_07685 PF13954 PapC N-terminal domain XM56_07690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_07695 PF01548 XM56_07695 XM56_07695 PF02371 XM56_07695 XM56_07705 PF00328 Histidine phosphatase superfamily (branch 2) XM56_07710 PF14001 XM56_07710 XM56_07715 PF11004 XM56_07715 XM56_07720 PF01037 AsnC family XM56_07720 PF13412 Winged helix-turn-helix DNA-binding XM56_07725 PF10777 XM56_07725 XM56_07730 PF00107 Zinc-binding dehydrogenase XM56_07730 PF08240 Alcohol dehydrogenase GroES-like domain XM56_07735 PF00872 XM56_07735 XM56_07740 PF00703 Glycosyl hydrolases family 2 XM56_07740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain XM56_07740 PF02837 Glycosyl hydrolases family 2, sugar binding domain XM56_07740 PF02929 Beta galactosidase small chain XM56_07740 PF16353 XM56_07740 XM56_07745 PF00356 Bacterial regulatory proteins, lacI family XM56_07745 PF13377 Periplasmic binding protein-like domain XM56_07750 PF00313 'Cold-shock' DNA-binding domain XM56_07755 PF10781 XM56_07755 XM56_07760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_07760 PF00672 HAMP domain XM56_07760 PF02203 Tar ligand binding domain homologue XM56_07775 PF02308 XM56_07775 XM56_07780 PF00122 E1-E2 ATPase XM56_07780 PF00689 Cation transporting ATPase, C-terminus XM56_07780 PF00690 Cation transporter/ATPase, N-terminus XM56_07780 PF00702 haloacid dehalogenase-like hydrolase XM56_07785 PF00107 Zinc-binding dehydrogenase XM56_07785 PF16884 XM56_07785 XM56_07790 PF00582 Universal stress protein family XM56_07795 PF05247 Flagellar transcriptional activator (FlhD) XM56_07800 PF05280 Flagellar transcriptional activator (FlhC) XM56_07805 PF01618 XM56_07805 XM56_07810 PF00691 OmpA family XM56_07810 PF13677 XM56_07810 XM56_07815 PF01584 CheW-like domain XM56_07815 PF01627 Hpt domain XM56_07815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_07815 PF02895 Signal transducing histidine kinase, homodimeric domain XM56_07815 PF09078 CheY binding XM56_07820 PF01584 CheW-like domain XM56_07825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_07825 PF00672 HAMP domain XM56_07825 PF02203 Tar ligand binding domain homologue XM56_07830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_07830 PF00672 HAMP domain XM56_07830 PF02203 Tar ligand binding domain homologue XM56_07835 PF01739 CheR methyltransferase, SAM binding domain XM56_07835 PF03705 CheR methyltransferase, all-alpha domain XM56_07840 PF00072 Response regulator receiver domain XM56_07840 PF01339 CheB methylesterase XM56_07845 PF00072 Response regulator receiver domain XM56_07850 PF04344 Chemotaxis phosphatase, CheZ XM56_07855 PF00082 Subtilase family XM56_07860 PF01312 FlhB HrpN YscU SpaS Family XM56_07865 PF00771 FHIPEP family XM56_07870 PF06366 XM56_07870 XM56_07875 PF07979 Intimin C-type lectin domain XM56_07875 PF09134 Invasin, domain 3 XM56_07875 PF11924 Protein of unknown function (DUF3442) XM56_07880 PF05130 FlgN protein XM56_07885 PF04316 Anti-sigma-28 factor, FlgM XM56_07890 PF13144 SAF-like XM56_07895 PF00460 Flagella basal body rod protein XM56_07900 PF00460 Flagella basal body rod protein XM56_07900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_07905 PF03963 XM56_07905 XM56_07905 PF13860 FlgD Ig-like domain XM56_07905 PF13861 FlgD Tudor-like domain XM56_07910 PF00460 Flagella basal body rod protein XM56_07910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_07910 PF07559 Flagellar basal body protein FlaE XM56_07915 PF00460 Flagella basal body rod protein XM56_07915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_07920 PF00460 Flagella basal body rod protein XM56_07920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_07925 PF02107 XM56_07925 XM56_07930 PF02119 XM56_07930 XM56_07935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase XM56_07935 PF10135 XM56_07935 XM56_07940 PF00460 Flagella basal body rod protein XM56_07940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal XM56_07945 PF00669 Bacterial flagellin N-terminal helical region XM56_07950 PF01311 XM56_07950 XM56_07955 PF01313 XM56_07955 XM56_07960 PF00813 XM56_07960 XM56_07965 PF04347 XM56_07965 XM56_07970 PF01052 Surface presentation of antigens (SPOA) XM56_07970 PF16973 XM56_07970 XM56_07975 PF01052 Surface presentation of antigens (SPOA) XM56_07975 PF02154 Flagellar motor switch protein FliM XM56_07980 PF03748 XM56_07980 XM56_07985 PF02120 Flagellar hook-length control protein FliK XM56_07990 PF02050 Flagellar FliJ protein XM56_07995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_08000 PF02108 XM56_08000 XM56_08005 PF01706 FliG C-terminal domain XM56_08005 PF14841 FliG middle domain XM56_08005 PF14842 FliG N-terminal domain XM56_08010 PF01514 Secretory protein of YscJ/FliF family XM56_08010 PF08345 XM56_08010 XM56_08015 PF02049 XM56_08015 XM56_08040 PF06183 DinI-like family XM56_08050 PF00730 HhH-GPD superfamily base excision DNA repair protein XM56_08055 PF13487 HD domain XM56_08060 PF12833 Helix-turn-helix domain XM56_08065 PF05400 Flagellar protein FliT XM56_08070 PF02561 Flagellar protein FliS XM56_08075 PF02465 XM56_08075 XM56_08075 PF07195 XM56_08075 XM56_08075 PF07196 Flagellin hook IN motif XM56_08080 PF00669 Bacterial flagellin N-terminal helical region XM56_08080 PF00700 Bacterial flagellin C-terminal helical region XM56_08085 PF00669 Bacterial flagellin N-terminal helical region XM56_08085 PF00700 Bacterial flagellin C-terminal helical region XM56_08095 PF04539 Sigma-70 region 3 XM56_08095 PF04542 Sigma-70 region 2 XM56_08095 PF04545 Sigma-70, region 4 XM56_08100 PF02899 Phage integrase, N-terminal SAM-like domain XM56_08105 PF00291 Pyridoxal-phosphate dependent enzyme XM56_08110 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_08115 PF00528 Binding-protein-dependent transport system inner membrane component XM56_08120 PF00005 ABC transporter XM56_08135 PF00171 Aldehyde dehydrogenase family XM56_08135 PF01619 Proline dehydrogenase XM56_08135 PF14850 DNA-binding domain of Proline dehydrogenase XM56_08140 PF00474 Sodium:solute symporter family XM56_08160 PF03239 XM56_08160 XM56_08165 PF09375 Imelysin XM56_08165 PF13473 Cupredoxin-like domain XM56_08170 PF04261 Dyp-type peroxidase family XM56_08175 PF03358 NADPH-dependent FMN reductase XM56_08180 PF01381 Helix-turn-helix XM56_08180 PF13239 XM56_08180 XM56_08185 PF01344 Kelch motif XM56_08200 PF01613 Flavin reductase like domain XM56_08205 PF00881 Nitroreductase family XM56_08210 PF00561 alpha/beta hydrolase fold XM56_08215 PF01042 Endoribonuclease L-PSP XM56_08220 PF00857 Isochorismatase family XM56_08230 PF00440 Bacterial regulatory proteins, tetR family XM56_08230 PF08362 YcdC-like protein, C-terminal region XM56_08235 PF00324 Amino acid permease XM56_08245 PF00589 Phage integrase family XM56_08250 PF01527 Transposase XM56_08255 PF13683 XM56_08255 XM56_08260 PF08241 Methyltransferase domain XM56_08275 PF00128 Alpha amylase, catalytic domain XM56_08285 PF06942 XM56_08285 XM56_08290 PF10769 XM56_08290 XM56_08295 PF00072 Response regulator receiver domain XM56_08295 PF00196 Bacterial regulatory proteins, luxR family XM56_08300 PF01541 GIY-YIG catalytic domain XM56_08300 PF02151 UvrB/uvrC motif XM56_08300 PF08459 UvrC Helix-hairpin-helix N-terminal XM56_08305 PF01066 CDP-alcohol phosphatidyltransferase XM56_08325 PF04606 XM56_08325 XM56_08330 PF01548 XM56_08330 XM56_08330 PF02371 XM56_08330 XM56_08335 PF05954 Phage late control gene D protein (GPD) XM56_08345 PF06528 XM56_08345 XM56_08350 PF10109 XM56_08350 XM56_08355 PF04985 XM56_08355 XM56_08360 PF04984 Phage tail sheath protein XM56_08360 PF17482 XM56_08360 XM56_08370 PF04754 XM56_08370 XM56_08390 PF04221 RelB antitoxin XM56_08395 PF15738 XM56_08395 XM56_08400 PF02413 XM56_08400 XM56_08410 PF03406 XM56_08410 XM56_08410 PF07484 Phage Tail Collar Domain XM56_08410 PF12571 XM56_08410 XM56_08415 PF12571 XM56_08415 XM56_08420 PF09684 XM56_08420 XM56_08425 PF04865 XM56_08425 XM56_08430 PF04965 Gene 25-like lysozyme XM56_08435 PF04717 Phage-related baseplate assembly protein XM56_08440 PF04365 Protein of unknown function (DUF497) XM56_08445 PF14384 XM56_08445 XM56_08450 PF13676 TIR domain XM56_08455 PF05069 XM56_08455 XM56_08460 PF06891 XM56_08460 XM56_08470 PF13539 D-alanyl-D-alanine carboxypeptidase XM56_08495 PF00872 XM56_08495 XM56_08505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_08505 PF03466 LysR substrate binding domain XM56_08510 PF01381 Helix-turn-helix XM56_08515 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_08525 PF06530 XM56_08525 XM56_08530 PF10753 XM56_08530 XM56_08535 PF16080 XM56_08535 XM56_08540 PF00959 Phage lysozyme XM56_08545 PF00561 alpha/beta hydrolase fold XM56_08550 PF04391 XM56_08550 XM56_08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_08555 PF03466 LysR substrate binding domain XM56_08560 PF00144 Beta-lactamase XM56_08565 PF01926 50S ribosome-binding GTPase XM56_08565 PF06071 Protein of unknown function (DUF933) XM56_08575 PF01195 Peptidyl-tRNA hydrolase XM56_08580 PF10762 XM56_08580 XM56_08590 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase XM56_08590 PF14572 Phosphoribosyl synthetase-associated domain XM56_08595 PF00288 GHMP kinases N terminal domain XM56_08595 PF08544 GHMP kinases C terminal XM56_08600 PF03550 Outer membrane lipoprotein LolB XM56_08605 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain XM56_08605 PF01488 Shikimate / quinate 5-dehydrogenase XM56_08605 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain XM56_08610 PF00472 RF-1 domain XM56_08610 PF03462 PCRF domain XM56_08615 PF13847 Methyltransferase domain XM56_08620 PF04247 XM56_08620 XM56_08625 PF13369 XM56_08625 XM56_08625 PF13371 Tetratricopeptide repeat XM56_08630 PF00793 DAHP synthetase I family XM56_08640 PF00990 GGDEF domain XM56_08650 PF03009 Glycerophosphoryl diester phosphodiesterase family XM56_08660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_08665 PF02811 PHP domain XM56_08670 PF02613 Nitrate reductase delta subunit XM56_08675 PF07273 Protein of unknown function (DUF1439) XM56_08680 PF07690 Major Facilitator Superfamily XM56_08690 PF13988 XM56_08690 XM56_08695 PF13302 Acetyltransferase (GNAT) domain XM56_08700 PF04337 Protein of unknown function, DUF480 XM56_08705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XM56_08710 PF03023 XM56_08710 XM56_08715 PF01699 Sodium/calcium exchanger protein XM56_08720 PF04954 Siderophore-interacting protein XM56_08720 PF08021 Siderophore-interacting FAD-binding domain XM56_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_08730 PF03466 LysR substrate binding domain XM56_08735 PF00672 HAMP domain XM56_08735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_08735 PF07730 Histidine kinase XM56_08735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term XM56_08740 PF02322 XM56_08740 XM56_08745 PF01654 XM56_08745 XM56_08750 PF00155 Aminotransferase class I and II XM56_08750 PF00392 Bacterial regulatory proteins, gntR family XM56_08755 PF00202 Aminotransferase class-III XM56_08760 PF04958 Arginine N-succinyltransferase beta subunit XM56_08765 PF00171 Aldehyde dehydrogenase family XM56_08770 PF04996 Succinylarginine dihydrolase XM56_08775 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family XM56_08780 PF00267 Gram-negative porin XM56_08785 PF00665 Integrase core domain XM56_08795 PF13518 Helix-turn-helix domain XM56_08800 PF05013 N-formylglutamate amidohydrolase XM56_08805 PF01979 Amidohydrolase family XM56_08810 PF00392 Bacterial regulatory proteins, gntR family XM56_08810 PF07702 UTRA domain XM56_08815 PF01979 Amidohydrolase family XM56_08820 PF05962 HutD XM56_08825 PF09223 YodA lipocalin-like domain XM56_08835 PF03797 Autotransporter beta-domain XM56_08840 PF02502 Ribose/Galactose Isomerase XM56_08840 PF12408 Ribose-5-phosphate isomerase XM56_08845 PF05598 XM56_08845 XM56_08845 PF13751 XM56_08845 XM56_08850 PF01476 LysM domain XM56_08850 PF01551 Peptidase family M23 XM56_08855 PF01116 Fructose-bisphosphate aldolase class-II XM56_08860 PF01380 SIS domain XM56_08865 PF03610 PTS system fructose IIA component XM56_08870 PF03613 XM56_08870 XM56_08875 PF03609 XM56_08875 XM56_08880 PF03830 PTS system sorbose subfamily IIB component XM56_08885 PF08013 Tagatose 6 phosphate kinase XM56_08890 PF00455 XM56_08890 XM56_08890 PF08220 DeoR-like helix-turn-helix domain XM56_08900 PF01548 XM56_08900 XM56_08900 PF02371 XM56_08900 XM56_08905 PF06551 XM56_08905 XM56_08910 PF00849 RNA pseudouridylate synthase XM56_08910 PF01479 S4 domain XM56_08915 PF03616 XM56_08915 XM56_08925 PF01548 XM56_08925 XM56_08930 PF02371 XM56_08930 XM56_08935 PF08003 Protein of unknown function (DUF1698) XM56_08940 PF13649 Methyltransferase domain XM56_08945 PF01124 MAPEG family XM56_08950 PF01904 Protein of unknown function DUF72 XM56_08955 PF00857 Isochorismatase family XM56_08960 PF09723 XM56_08960 XM56_08965 PF00152 tRNA synthetases class II (D, K and N) XM56_08965 PF01336 OB-fold nucleic acid binding domain XM56_08965 PF02938 GAD domain XM56_08970 PF00293 NUDIX domain XM56_08975 PF01709 Transcriptional regulator XM56_08980 PF02075 Crossover junction endodeoxyribonuclease RuvC XM56_08985 PF01330 RuvA N terminal domain XM56_08985 PF07499 RuvA, C-terminal domain XM56_08985 PF14520 Helix-hairpin-helix domain XM56_08990 PF05491 Holliday junction DNA helicase ruvB C-terminus XM56_08990 PF05496 Holliday junction DNA helicase ruvB N-terminus XM56_08995 PF00854 POT family XM56_09000 PF00950 XM56_09000 XM56_09005 PF00005 ABC transporter XM56_09010 PF01297 Periplasmic solute binding protein family XM56_09015 PF01551 Peptidase family M23 XM56_09015 PF04225 Opacity-associated protein A LysM-like domain XM56_09015 PF08525 XM56_09015 XM56_09020 PF03279 XM56_09020 XM56_09030 PF00872 XM56_09030 XM56_09035 PF00224 Pyruvate kinase, barrel domain XM56_09035 PF02887 Pyruvate kinase, alpha/beta domain XM56_09040 PF01380 SIS domain XM56_09040 PF01418 Helix-turn-helix domain, rpiR family XM56_09045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain XM56_09045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain XM56_09050 PF01081 KDPG and KHG aldolase XM56_09055 PF00893 Small Multidrug Resistance protein XM56_09060 PF00893 Small Multidrug Resistance protein XM56_09065 PF01042 Endoribonuclease L-PSP XM56_09070 PF06733 DEAD_2 XM56_09070 PF13307 Helicase C-terminal domain XM56_09075 PF00814 Glycoprotease family XM56_09080 PF03843 XM56_09080 XM56_09085 PF00501 AMP-binding enzyme XM56_09085 PF13193 AMP-binding enzyme C-terminal domain XM56_09090 PF00570 HRDC domain XM56_09090 PF01612 3'-5' exonuclease XM56_09095 PF03776 Septum formation topological specificity factor MinE XM56_09100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain XM56_09105 PF03775 Septum formation inhibitor MinC, C-terminal domain XM56_09105 PF05209 Septum formation inhibitor MinC, N-terminal domain XM56_09115 PF05166 YcgL domain XM56_09120 PF13406 Transglycosylase SLT domain XM56_09125 PF01557 Fumarylacetoacetate (FAA) hydrolase family XM56_09130 PF03692 XM56_09130 XM56_09145 PF00892 EamA-like transporter family XM56_09155 PF00924 Mechanosensitive ion channel XM56_09160 PF13417 Glutathione S-transferase, N-terminal domain XM56_09160 PF14834 Glutathione S-transferase, C-terminal domain XM56_09165 PF13302 Acetyltransferase (GNAT) domain XM56_09175 PF04266 ASCH domain XM56_09180 PF07351 XM56_09180 XM56_09185 PF00989 PAS fold XM56_09185 PF00990 GGDEF domain XM56_09185 PF08447 PAS fold XM56_09185 PF08448 PAS fold XM56_09190 PF05229 XM56_09190 XM56_09195 PF00577 Outer membrane usher protein XM56_09195 PF13953 PapC C-terminal domain XM56_09200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_09205 PF05229 XM56_09205 XM56_09210 PF05229 XM56_09210 XM56_09215 PF05229 XM56_09215 XM56_09220 PF07690 Major Facilitator Superfamily XM56_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_09225 PF03466 LysR substrate binding domain XM56_09230 PF02470 XM56_09230 XM56_09235 PF04403 XM56_09235 XM56_09240 PF13185 GAF domain XM56_09245 PF04352 ProQ/FINO family XM56_09245 PF17516 XM56_09245 XM56_09250 PF00595 PDZ domain (Also known as DHR or GLGF) XM56_09250 PF03572 Peptidase family S41 XM56_09250 PF11818 XM56_09250 XM56_09255 PF01435 Peptidase family M48 XM56_09270 PF14583 Oligogalacturonate lyase XM56_09275 PF01614 Bacterial transcriptional regulator XM56_09275 PF09339 IclR helix-turn-helix domain XM56_09280 PF01471 Putative peptidoglycan binding domain XM56_09280 PF01510 N-acetylmuramoyl-L-alanine amidase XM56_09285 PF00375 Sodium:dicarboxylate symporter family XM56_09290 PF04307 XM56_09290 XM56_09300 PF06178 Oligogalacturonate-specific porin protein (KdgM) XM56_09305 PF13416 Bacterial extracellular solute-binding protein XM56_09310 PF00005 ABC transporter XM56_09310 PF08402 TOBE domain XM56_09315 PF00528 Binding-protein-dependent transport system inner membrane component XM56_09320 PF00528 Binding-protein-dependent transport system inner membrane component XM56_09325 PF06917 Periplasmic pectate lyase XM56_09330 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_09335 PF04962 KduI/IolB family XM56_09340 PF07883 Cupin domain XM56_09345 PF13419 Haloacid dehalogenase-like hydrolase XM56_09350 PF14002 XM56_09350 XM56_09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_09355 PF03466 LysR substrate binding domain XM56_09360 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain XM56_09360 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain XM56_09365 PF00378 Enoyl-CoA hydratase/isomerase family XM56_09370 PF03308 ArgK protein XM56_09375 PF01642 Methylmalonyl-CoA mutase XM56_09375 PF02310 B12 binding domain XM56_09380 PF03881 Fructosamine kinase XM56_09385 PF00950 XM56_09385 XM56_09390 PF00950 XM56_09390 XM56_09395 PF00005 ABC transporter XM56_09400 PF01297 Periplasmic solute binding protein family XM56_09405 PF01464 Transglycosylase SLT domain XM56_09410 PF01914 XM56_09410 XM56_09435 PF04474 XM56_09435 XM56_09440 PF13619 XM56_09440 XM56_09445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XM56_09445 PF02824 TGS domain XM56_09445 PF03129 Anticodon binding domain XM56_09445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XM56_09450 PF00707 Translation initiation factor IF-3, C-terminal domain XM56_09455 PF01632 Ribosomal protein L35 XM56_09460 PF00453 Ribosomal protein L20 XM56_09465 PF01409 tRNA synthetases class II core domain (F) XM56_09465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain XM56_09470 PF01588 Putative tRNA binding domain XM56_09470 PF03147 Ferredoxin-fold anticodon binding domain XM56_09470 PF03483 B3/4 domain XM56_09470 PF03484 tRNA synthetase B5 domain XM56_09475 PF00216 Bacterial DNA-binding protein XM56_09480 PF05154 XM56_09480 XM56_09485 PF10697 XM56_09485 XM56_09490 PF01032 FecCD transport family XM56_09495 PF00255 Glutathione peroxidase XM56_09500 PF00005 ABC transporter XM56_09505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XM56_09510 PF00535 Glycosyl transferase family 2 XM56_09515 PF00551 Formyl transferase XM56_09515 PF01370 NAD dependent epimerase/dehydratase family XM56_09515 PF02911 Formyl transferase, C-terminal domain XM56_09520 PF01522 Polysaccharide deacetylase XM56_09525 PF02366 XM56_09525 XM56_09530 PF00892 EamA-like transporter family XM56_09540 PF00877 NlpC/P60 family XM56_09545 PF03099 Biotin/lipoate A/B protein ligase family XM56_09545 PF10437 Bacterial lipoate protein ligase C-terminus XM56_09550 PF02696 XM56_09550 XM56_09555 PF01497 Periplasmic binding protein XM56_09560 PF05171 Haemin-degrading HemS XM56_09565 PF00593 TonB dependent receptor XM56_09565 PF07715 TonB-dependent Receptor Plug Domain XM56_09570 PF10636 Hemin uptake protein hemP XM56_09575 PF00793 DAHP synthetase I family XM56_09580 PF03618 XM56_09580 XM56_09585 PF00391 PEP-utilising enzyme, mobile domain XM56_09585 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain XM56_09585 PF02896 PEP-utilising enzyme, TIM barrel domain XM56_09590 PF01594 XM56_09590 XM56_09595 PF01565 FAD binding domain XM56_09595 PF02913 FAD linked oxidases, C-terminal domain XM56_09595 PF13183 4Fe-4S dicluster domain XM56_09600 PF01548 XM56_09600 XM56_09600 PF02371 XM56_09600 XM56_09605 PF03061 Thioesterase superfamily XM56_09610 PF01521 Iron-sulphur cluster biosynthesis XM56_09615 PF01458 Uncharacterized protein family (UPF0051) XM56_09620 PF00005 ABC transporter XM56_09625 PF01458 Uncharacterized protein family (UPF0051) XM56_09630 PF00266 Aminotransferase class-V XM56_09635 PF02657 Fe-S metabolism associated domain XM56_09640 PF03734 L,D-transpeptidase catalytic domain XM56_09645 PF04728 Lipoprotein leucine-zipper XM56_09650 PF00224 Pyruvate kinase, barrel domain XM56_09650 PF02887 Pyruvate kinase, alpha/beta domain XM56_09660 PF01554 MatE XM56_09665 PF00677 Lumazine binding domain XM56_09670 PF02353 Mycolic acid cyclopropane synthetase XM56_09675 PF07690 Major Facilitator Superfamily XM56_09680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_09680 PF03466 LysR substrate binding domain XM56_09685 PF00356 Bacterial regulatory proteins, lacI family XM56_09685 PF13377 Periplasmic binding protein-like domain XM56_09690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain XM56_09690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain XM56_09695 PF00877 NlpC/P60 family XM56_09700 PF00462 Glutaredoxin XM56_09705 PF00929 Exonuclease XM56_09710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XM56_09715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family XM56_09720 PF00440 Bacterial regulatory proteins, tetR family XM56_09720 PF16925 XM56_09720 XM56_09725 PF00884 Sulfatase XM56_09725 PF08019 XM56_09725 XM56_09730 PF06945 XM56_09730 XM56_09735 PF00248 Aldo/keto reductase family XM56_09740 PF04632 XM56_09740 XM56_09745 PF13437 HlyD family secretion protein XM56_09745 PF13533 Biotin-lipoyl like XM56_09750 PF07869 XM56_09750 XM56_09755 PF01047 MarR family XM56_09760 PF05433 XM56_09760 XM56_09765 PF03702 Uncharacterised protein family (UPF0075) XM56_09770 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme XM56_09775 PF01243 Pyridoxamine 5'-phosphate oxidase XM56_09775 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region XM56_09780 PF00579 tRNA synthetases class I (W and Y) XM56_09780 PF01479 S4 domain XM56_09785 PF08543 Phosphomethylpyrimidine kinase XM56_09790 PF00043 Glutathione S-transferase, C-terminal domain XM56_09790 PF02798 Glutathione S-transferase, N-terminal domain XM56_09795 PF11656 XM56_09795 XM56_09800 PF06930 XM56_09800 XM56_09805 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XM56_09810 PF00854 POT family XM56_09815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_09815 PF03466 LysR substrate binding domain XM56_09830 PF00005 ABC transporter XM56_09835 PF00005 ABC transporter XM56_09835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_09840 PF00528 Binding-protein-dependent transport system inner membrane component XM56_09840 PF12911 XM56_09840 XM56_09845 PF00528 Binding-protein-dependent transport system inner membrane component XM56_09850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_09855 PF02917 Pertussis toxin, subunit 1 XM56_09865 PF00158 Sigma-54 interaction domain XM56_09865 PF02954 Bacterial regulatory protein, Fis family XM56_09870 PF04012 XM56_09870 XM56_09875 PF06667 XM56_09875 XM56_09880 PF04024 XM56_09880 XM56_09885 PF09584 XM56_09885 XM56_09890 PF04317 XM56_09890 XM56_09895 PF05128 XM56_09895 XM56_09900 PF08808 XM56_09900 XM56_09905 PF09722 XM56_09905 XM56_09910 PF00158 Sigma-54 interaction domain XM56_09910 PF00989 PAS fold XM56_09915 PF08534 Redoxin XM56_09920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain XM56_09920 PF13378 Enolase C-terminal domain-like XM56_09925 PF00246 Zinc carboxypeptidase XM56_09930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_09935 PF01544 CorA-like Mg2+ transporter protein XM56_09940 PF01171 PP-loop family XM56_09945 PF00388 Phosphatidylinositol-specific phospholipase C, X domain XM56_09950 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase XM56_09950 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg XM56_09950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_09950 PF10371 Domain of unknown function XM56_09950 PF12838 4Fe-4S dicluster domain XM56_09950 PF17147 XM56_09950 XM56_09955 PF00893 Small Multidrug Resistance protein XM56_09960 PF02308 XM56_09960 XM56_09965 PF03891 XM56_09965 XM56_09970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XM56_09970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_09975 PF11739 XM56_09975 XM56_09980 PF13617 XM56_09980 XM56_09985 PF07027 XM56_09985 XM56_09990 PF02525 Flavodoxin-like fold XM56_09995 PF00270 DEAD/DEAH box helicase XM56_09995 PF00271 Helicase conserved C-terminal domain XM56_09995 PF04408 Helicase associated domain (HA2) XM56_09995 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold XM56_09995 PF11898 XM56_09995 XM56_10000 PF05973 XM56_10000 XM56_10005 PF01381 Helix-turn-helix XM56_10010 PF00089 Trypsin XM56_10020 PF02074 Carboxypeptidase Taq (M32) metallopeptidase XM56_10025 PF00672 HAMP domain XM56_10025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_10030 PF00072 Response regulator receiver domain XM56_10030 PF00486 Transcriptional regulatory protein, C terminal XM56_10040 PF13520 Amino acid permease XM56_10045 PF07338 Protein of unknown function (DUF1471) XM56_10055 PF01262 Alanine dehydrogenase/PNT, C-terminal domain XM56_10055 PF05222 Alanine dehydrogenase/PNT, N-terminal domain XM56_10055 PF12769 Domain of unknown function (DUF3814) XM56_10060 PF02233 NAD(P) transhydrogenase beta subunit XM56_10065 PF00582 Universal stress protein family XM56_10070 PF00027 Cyclic nucleotide-binding domain XM56_10070 PF13545 Crp-like helix-turn-helix domain XM56_10075 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XM56_10075 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XM56_10080 PF05013 N-formylglutamate amidohydrolase XM56_10085 PF04463 XM56_10085 XM56_10090 PF06445 GyrI-like small molecule binding domain XM56_10095 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_10100 PF00245 Alkaline phosphatase XM56_10105 PF00294 pfkB family carbohydrate kinase XM56_10120 PF13208 XM56_10120 XM56_10120 PF15615 XM56_10120 XM56_10125 PF13419 Haloacid dehalogenase-like hydrolase XM56_10130 PF13710 ACT domain XM56_10135 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_10135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_10135 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_10140 PF07313 Protein of unknown function (DUF1460) XM56_10145 PF01510 N-acetylmuramoyl-L-alanine amidase XM56_10150 PF10139 XM56_10150 XM56_10155 PF07520 XM56_10155 XM56_10170 PF01548 XM56_10170 XM56_10170 PF02371 XM56_10170 XM56_10175 PF07690 Major Facilitator Superfamily XM56_10180 PF00459 Inositol monophosphatase family XM56_10185 PF00356 Bacterial regulatory proteins, lacI family XM56_10185 PF13377 Periplasmic binding protein-like domain XM56_10190 PF01048 Phosphorylase superfamily XM56_10190 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus XM56_10195 PF13700 XM56_10195 XM56_10200 PF00239 Resolvase, N terminal domain XM56_10215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_10215 PF03466 LysR substrate binding domain XM56_10220 PF00795 Carbon-nitrogen hydrolase XM56_10225 PF02274 Amidinotransferase XM56_10230 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_10235 PF00528 Binding-protein-dependent transport system inner membrane component XM56_10240 PF00528 Binding-protein-dependent transport system inner membrane component XM56_10245 PF01037 AsnC family XM56_10245 PF13412 Winged helix-turn-helix DNA-binding XM56_10250 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family XM56_10255 PF01047 MarR family XM56_10265 PF13437 HlyD family secretion protein XM56_10265 PF13533 Biotin-lipoyl like XM56_10270 PF12698 ABC-2 family transporter protein XM56_10275 PF02798 Glutathione S-transferase, N-terminal domain XM56_10275 PF13410 Glutathione S-transferase, C-terminal domain XM56_10280 PF13449 Esterase-like activity of phytase XM56_10290 PF07690 Major Facilitator Superfamily XM56_10295 PF00196 Bacterial regulatory proteins, luxR family XM56_10295 PF08448 PAS fold XM56_10310 PF00263 XM56_10310 XM56_10310 PF03958 Bacterial type II/III secretion system short domain XM56_10315 PF05707 Zonular occludens toxin (Zot) XM56_10320 PF17537 XM56_10320 XM56_10325 PF05357 Phage Coat Protein A XM56_10330 PF05371 Phage major coat protein, Gp8 XM56_10340 PF17426 XM56_10340 XM56_10345 PF05144 XM56_10345 XM56_10345 PF05155 XM56_10345 XM56_10370 PF07338 Protein of unknown function (DUF1471) XM56_10380 PF00106 short chain dehydrogenase XM56_10385 PF02694 XM56_10385 XM56_10395 PF06932 XM56_10395 XM56_10400 PF06649 XM56_10400 XM56_10410 PF00654 Voltage gated chloride channel XM56_10415 PF13500 AAA domain XM56_10420 PF00480 ROK family XM56_10425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_10425 PF03466 LysR substrate binding domain XM56_10430 PF07690 Major Facilitator Superfamily XM56_10435 PF13396 XM56_10435 XM56_10445 PF00296 Luciferase-like monooxygenase XM56_10450 PF00296 Luciferase-like monooxygenase XM56_10460 PF05472 DNA replication terminus site-binding protein (Ter protein) XM56_10465 PF00196 Bacterial regulatory proteins, luxR family XM56_10465 PF08448 PAS fold XM56_10470 PF00206 Lyase XM56_10470 PF10415 Fumarase C C-terminus XM56_10475 PF01238 Phosphomannose isomerase type I XM56_10480 PF06097 XM56_10480 XM56_10485 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_10490 PF00356 Bacterial regulatory proteins, lacI family XM56_10490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_10495 PF00367 phosphotransferase system, EIIB XM56_10495 PF02378 Phosphotransferase system, EIIC XM56_10500 PF00155 Aminotransferase class I and II XM56_10505 PF00962 Adenosine/AMP deaminase XM56_10510 PF13593 SBF-like CPA transporter family (DUF4137) XM56_10515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold XM56_10515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain XM56_10520 PF02311 AraC-like ligand binding domain XM56_10520 PF12833 Helix-turn-helix domain XM56_10525 PF02653 XM56_10525 XM56_10530 PF00005 ABC transporter XM56_10535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_10540 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XM56_10540 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XM56_10545 PF02610 L-arabinose isomerase XM56_10545 PF11762 L-arabinose isomerase C-terminal domain XM56_10550 PF13175 AAA ATPase domain XM56_10550 PF13304 AAA domain XM56_10555 PF00005 ABC transporter XM56_10555 PF00664 ABC transporter transmembrane region XM56_10555 PF03412 Peptidase C39 family XM56_10560 PF13437 HlyD family secretion protein XM56_10560 PF13533 Biotin-lipoyl like XM56_10570 PF01268 Formate--tetrahydrofolate ligase XM56_10575 PF10754 XM56_10575 XM56_10580 PF02508 XM56_10580 XM56_10585 PF04060 Putative Fe-S cluster XM56_10585 PF14697 4Fe-4S dicluster domain XM56_10590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XM56_10590 PF10531 SLBB domain XM56_10590 PF13237 4Fe-4S dicluster domain XM56_10590 PF13375 RnfC Barrel sandwich hybrid domain XM56_10600 PF06445 GyrI-like small molecule binding domain XM56_10600 PF12833 Helix-turn-helix domain XM56_10605 PF03116 XM56_10605 XM56_10610 PF04205 FMN-binding domain XM56_10615 PF02508 XM56_10615 XM56_10620 PF00633 Helix-hairpin-helix motif XM56_10620 PF00730 HhH-GPD superfamily base excision DNA repair protein XM56_10620 PF10576 Iron-sulfur binding domain of endonuclease III XM56_10635 PF01548 XM56_10635 XM56_10635 PF02371 XM56_10635 XM56_10640 PF00384 Molybdopterin oxidoreductase XM56_10640 PF01568 Molydopterin dinucleotide binding domain XM56_10645 PF00575 S1 RNA binding domain XM56_10645 PF00773 RNB domain XM56_10645 PF08206 Ribonuclease B OB domain XM56_10650 PF02554 XM56_10650 XM56_10650 PF13722 XM56_10650 XM56_10655 PF04328 XM56_10655 XM56_10660 PF00923 Transaldolase XM56_10665 PF00455 XM56_10665 XM56_10665 PF08220 DeoR-like helix-turn-helix domain XM56_10670 PF09932 XM56_10670 XM56_10675 PF00596 Class II Aldolase and Adducin N-terminal domain XM56_10680 PF05433 XM56_10680 XM56_10685 PF01548 XM56_10685 XM56_10685 PF02371 XM56_10685 XM56_10690 PF01253 Translation initiation factor SUI1 XM56_10695 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family XM56_10700 PF07338 Protein of unknown function (DUF1471) XM56_10705 PF03594 XM56_10705 XM56_10710 PF01381 Helix-turn-helix XM56_10710 PF07883 Cupin domain XM56_10720 PF13176 Tetratricopeptide repeat XM56_10720 PF13432 Tetratricopeptide repeat XM56_10725 PF06305 XM56_10725 XM56_10730 PF01569 PAP2 superfamily XM56_10735 PF00925 GTP cyclohydrolase II XM56_10745 PF00330 Aconitase family (aconitate hydratase) XM56_10745 PF00694 Aconitase C-terminal domain XM56_10755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_10755 PF03466 LysR substrate binding domain XM56_10760 PF01131 DNA topoisomerase XM56_10760 PF01396 XM56_10760 XM56_10760 PF01751 Toprim domain XM56_10760 PF08272 Topoisomerase I zinc-ribbon-like XM56_10765 PF10692 Protein of unknown function (DUF2498) XM56_10770 PF01343 Peptidase family S49 XM56_10770 PF08496 XM56_10770 XM56_10775 PF00106 short chain dehydrogenase XM56_10780 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP XM56_10780 PF12557 Cob(I)alamin adenosyltransferase N terminal XM56_10790 PF00849 RNA pseudouridylate synthase XM56_10790 PF01479 S4 domain XM56_10795 PF01300 Telomere recombination XM56_10800 PF02811 PHP domain XM56_10805 PF00425 chorismate binding enzyme XM56_10805 PF04715 Anthranilate synthase component I, N terminal region XM56_10810 PF00117 Glutamine amidotransferase class-I XM56_10815 PF00591 Glycosyl transferase family, a/b domain XM56_10815 PF02885 Glycosyl transferase family, helical bundle domain XM56_10820 PF00218 Indole-3-glycerol phosphate synthase XM56_10820 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase XM56_10825 PF00291 Pyridoxal-phosphate dependent enzyme XM56_10830 PF00290 Tryptophan synthase alpha chain XM56_10835 PF04972 BON domain XM56_10840 PF03922 OmpW family XM56_10845 PF03692 XM56_10845 XM56_10850 PF06790 XM56_10850 XM56_10855 PF00916 XM56_10855 XM56_10855 PF01740 STAS domain XM56_10860 PF04279 XM56_10860 XM56_10865 PF03061 Thioesterase superfamily XM56_10870 PF03544 Gram-negative bacterial TonB protein C-terminal XM56_10870 PF16031 XM56_10870 XM56_10875 PF03795 YCII-related domain XM56_10885 PF00563 EAL domain XM56_10890 PF13091 PLD-like domain XM56_10890 PF13396 XM56_10890 XM56_10895 PF04269 Protein of unknown function, DUF440 XM56_10900 PF00005 ABC transporter XM56_10900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_10905 PF00005 ABC transporter XM56_10905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_10910 PF00528 Binding-protein-dependent transport system inner membrane component XM56_10910 PF12911 XM56_10910 XM56_10915 PF00528 Binding-protein-dependent transport system inner membrane component XM56_10920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_10925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_10930 PF01914 XM56_10930 XM56_10935 PF00171 Aldehyde dehydrogenase family XM56_10935 PF00465 Iron-containing alcohol dehydrogenase XM56_10940 PF00265 Thymidine kinase XM56_10950 PF00816 H-NS histone family XM56_10955 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XM56_10955 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XM56_10955 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XM56_10960 PF00072 Response regulator receiver domain XM56_10965 PF01734 Patatin-like phospholipase XM56_10975 PF02810 SEC-C motif XM56_10980 PF00551 Formyl transferase XM56_10980 PF01842 ACT domain XM56_10990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_10995 PF03372 Endonuclease/Exonuclease/phosphatase family XM56_11000 PF00293 NUDIX domain XM56_11005 PF07383 XM56_11005 XM56_11010 PF01131 DNA topoisomerase XM56_11010 PF01751 Toprim domain XM56_11015 PF00586 AIR synthase related protein, N-terminal domain XM56_11015 PF02769 AIR synthase related protein, C-terminal domain XM56_11020 PF00881 Nitroreductase family XM56_11025 PF01343 Peptidase family S49 XM56_11030 PF00710 Asparaginase XM56_11035 PF00857 Isochorismatase family XM56_11040 PF01548 XM56_11040 XM56_11040 PF02371 XM56_11040 XM56_11045 PF07023 XM56_11045 XM56_11050 PF01641 SelR domain XM56_11055 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM56_11055 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain XM56_11060 PF01263 Aldose 1-epimerase XM56_11065 PF06629 XM56_11065 XM56_11070 PF06798 XM56_11070 XM56_11070 PF08298 PrkA AAA domain XM56_11075 PF04285 XM56_11075 XM56_11080 PF00892 EamA-like transporter family XM56_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_11090 PF03466 LysR substrate binding domain XM56_11095 PF02678 Pirin XM56_11095 PF05726 Pirin C-terminal cupin domain XM56_11100 PF00563 EAL domain XM56_11100 PF00990 GGDEF domain XM56_11100 PF08447 PAS fold XM56_11100 PF13185 GAF domain XM56_11100 PF13426 PAS domain XM56_11105 PF07690 Major Facilitator Superfamily XM56_11110 PF00842 Alanine racemase, C-terminal domain XM56_11110 PF01168 Alanine racemase, N-terminal domain XM56_11115 PF01266 FAD dependent oxidoreductase XM56_11120 PF04293 XM56_11120 XM56_11125 PF00392 Bacterial regulatory proteins, gntR family XM56_11125 PF07840 FadR C-terminal domain XM56_11130 PF06450 XM56_11130 XM56_11135 PF02600 Disulfide bond formation protein DsbB XM56_11155 PF03932 CutC family XM56_11160 PF06185 YecM protein XM56_11165 PF00750 tRNA synthetases class I (R) XM56_11165 PF03485 Arginyl tRNA synthetase N terminal domain XM56_11165 PF05746 DALR anticodon binding domain XM56_11170 PF05598 XM56_11170 XM56_11170 PF13751 XM56_11170 XM56_11175 PF02562 PhoH-like protein XM56_11185 PF13302 Acetyltransferase (GNAT) domain XM56_11190 PF13994 XM56_11190 XM56_11195 PF00535 Glycosyl transferase family 2 XM56_11200 PF01522 Polysaccharide deacetylase XM56_11200 PF14883 Hypothetical glycosyl hydrolase family 13 XM56_11210 PF00557 Metallopeptidase family M24 XM56_11210 PF01321 Creatinase/Prolidase N-terminal domain XM56_11215 PF06276 Ferric iron reductase FhuF-like transporter XM56_11215 PF11575 XM56_11215 XM56_11220 PF01411 tRNA synthetases class II (A) XM56_11220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain XM56_11225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_11225 PF03466 LysR substrate binding domain XM56_11230 PF03848 Tellurite resistance protein TehB XM56_11230 PF09313 Domain of unknown function (DUF1971) XM56_11235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XM56_11240 PF08534 Redoxin XM56_11245 PF00005 ABC transporter XM56_11250 PF02687 XM56_11250 XM56_11250 PF12704 MacB-like periplasmic core domain XM56_11255 PF02687 XM56_11255 XM56_11260 PF04945 YHS domain XM56_11260 PF10080 XM56_11260 XM56_11265 PF10634 Fe2+ transport protein XM56_11270 PF03239 XM56_11270 XM56_11280 PF07690 Major Facilitator Superfamily XM56_11285 PF04960 Glutaminase XM56_11290 PF01261 Xylose isomerase-like TIM barrel XM56_11295 PF00596 Class II Aldolase and Adducin N-terminal domain XM56_11300 PF07005 Protein of unknown function, DUF1537 XM56_11300 PF17042 XM56_11300 XM56_11305 PF00455 XM56_11305 XM56_11305 PF08220 DeoR-like helix-turn-helix domain XM56_11310 PF00989 PAS fold XM56_11310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_11310 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain XM56_11310 PF17203 XM56_11310 XM56_11315 PF00072 Response regulator receiver domain XM56_11320 PF03390 XM56_11320 XM56_11325 PF00324 Amino acid permease XM56_11330 PF04343 XM56_11330 XM56_11335 PF00480 ROK family XM56_11340 PF07690 Major Facilitator Superfamily XM56_11345 PF08282 haloacid dehalogenase-like hydrolase XM56_11355 PF00872 XM56_11355 XM56_11360 PF08242 Methyltransferase domain XM56_11370 PF00872 XM56_11370 XM56_11375 PF00196 Bacterial regulatory proteins, luxR family XM56_11375 PF08448 PAS fold XM56_11380 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin XM56_11385 PF08448 PAS fold XM56_11400 PF06995 XM56_11400 XM56_11405 PF05954 Phage late control gene D protein (GPD) XM56_11415 PF00589 Phage integrase family XM56_11420 PF10709 XM56_11420 XM56_11425 PF05425 XM56_11425 XM56_11430 PF04234 CopC domain XM56_11435 PF00210 Ferritin-like domain XM56_11440 PF06440 DNA polymerase III, theta subunit XM56_11445 PF00561 alpha/beta hydrolase fold XM56_11450 PF00929 Exonuclease XM56_11455 PF00326 Prolyl oligopeptidase family XM56_11455 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain XM56_11460 PF13995 YebF-like protein XM56_11465 PF04266 ASCH domain XM56_11470 PF07130 YebG protein XM56_11475 PF00270 DEAD/DEAH box helicase XM56_11475 PF00271 Helicase conserved C-terminal domain XM56_11475 PF03880 DbpA RNA binding domain XM56_11480 PF02222 ATP-grasp domain XM56_11485 PF03701 XM56_11485 XM56_11490 PF00425 chorismate binding enzyme XM56_11490 PF04715 Anthranilate synthase component I, N terminal region XM56_11495 PF00293 NUDIX domain XM56_11500 PF03313 XM56_11500 XM56_11500 PF03315 Serine dehydratase beta chain XM56_11505 PF01548 XM56_11505 XM56_11505 PF02371 XM56_11505 XM56_11510 PF00571 CBS domain XM56_11510 PF03471 Transporter associated domain XM56_11510 PF03741 XM56_11510 XM56_11515 PF03610 PTS system fructose IIA component XM56_11515 PF03830 PTS system sorbose subfamily IIB component XM56_11520 PF03609 XM56_11520 XM56_11525 PF03613 XM56_11525 XM56_11530 PF06173 XM56_11530 XM56_11535 PF02659 XM56_11535 XM56_11540 PF00593 TonB dependent receptor XM56_11540 PF07715 TonB-dependent Receptor Plug Domain XM56_11545 PF00989 PAS fold XM56_11545 PF00990 GGDEF domain XM56_11545 PF08448 PAS fold XM56_11545 PF13426 PAS domain XM56_11555 PF13847 Methyltransferase domain XM56_11560 PF00905 Penicillin binding protein transpeptidase domain XM56_11560 PF03717 Penicillin-binding Protein dimerisation domain XM56_11565 PF02578 Multi-copper polyphenol oxidoreductase laccase XM56_11570 PF00313 'Cold-shock' DNA-binding domain XM56_11575 PF10736 XM56_11575 XM56_11580 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP XM56_11585 PF00324 Amino acid permease XM56_11590 PF13269 XM56_11590 XM56_11595 PF10765 Protein of unknown function (DUF2591) XM56_11600 PF13974 XM56_11600 XM56_11605 PF13996 XM56_11605 XM56_11610 PF10964 XM56_11610 XM56_11620 PF12833 Helix-turn-helix domain XM56_11630 PF13520 Amino acid permease XM56_11635 PF00583 Acetyltransferase (GNAT) family XM56_11640 PF00005 ABC transporter XM56_11640 PF00664 ABC transporter transmembrane region XM56_11645 PF01163 RIO1 family XM56_11650 PF03372 Endonuclease/Exonuclease/phosphatase family XM56_11655 PF03498 Cytolethal distending toxin A/C family XM56_11660 PF00990 GGDEF domain XM56_11660 PF08447 PAS fold XM56_11660 PF13426 PAS domain XM56_11670 PF06411 HdeA/HdeB family XM56_11675 PF07007 Protein of unknown function (DUF1311) XM56_11680 PF12833 Helix-turn-helix domain XM56_11685 PF00892 EamA-like transporter family XM56_11695 PF03795 YCII-related domain XM56_11700 PF01638 HxlR-like helix-turn-helix XM56_11705 PF13460 NADH(P)-binding XM56_11715 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family XM56_11720 PF00717 Peptidase S24-like XM56_11725 PF00817 impB/mucB/samB family XM56_11725 PF11798 IMS family HHH motif XM56_11725 PF11799 impB/mucB/samB family C-terminal domain XM56_11725 PF13438 XM56_11725 XM56_11730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_11730 PF08447 PAS fold XM56_11740 PF00356 Bacterial regulatory proteins, lacI family XM56_11740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_11745 PF00251 Glycosyl hydrolases family 32 N-terminal domain XM56_11745 PF08244 Glycosyl hydrolases family 32 C terminal XM56_11750 PF01306 LacY proton/sugar symporter XM56_11755 PF04932 XM56_11755 XM56_11760 PF00535 Glycosyl transferase family 2 XM56_11765 PF00180 Isocitrate/isopropylmalate dehydrogenase XM56_11770 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) XM56_11795 PF00180 Isocitrate/isopropylmalate dehydrogenase XM56_11800 PF00849 RNA pseudouridylate synthase XM56_11805 PF00293 NUDIX domain XM56_11810 PF03054 tRNA methyl transferase XM56_11815 PF04356 Protein of unknown function (DUF489) XM56_11820 PF00206 Lyase XM56_11820 PF08328 Adenylosuccinate lyase C-terminal XM56_11825 PF13505 Outer membrane protein beta-barrel domain XM56_11830 PF00072 Response regulator receiver domain XM56_11830 PF00486 Transcriptional regulatory protein, C terminal XM56_11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_11835 PF08918 PhoQ Sensor XM56_11840 PF08007 Cupin superfamily protein XM56_11845 PF01546 Peptidase family M20/M25/M40 XM56_11845 PF07687 Peptidase dimerisation domain XM56_11850 PF02146 Sir2 family XM56_11855 PF00480 ROK family XM56_11860 PF02687 XM56_11860 XM56_11860 PF12704 MacB-like periplasmic core domain XM56_11865 PF00005 ABC transporter XM56_11870 PF02687 XM56_11870 XM56_11870 PF12704 MacB-like periplasmic core domain XM56_11875 PF00270 DEAD/DEAH box helicase XM56_11875 PF00271 Helicase conserved C-terminal domain XM56_11875 PF02559 CarD-like/TRCF domain XM56_11875 PF03461 TRCF domain XM56_11880 PF05433 XM56_11880 XM56_11885 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_11890 PF05728 Uncharacterised protein family (UPF0227) XM56_11895 PF00933 Glycosyl hydrolase family 3 N terminal domain XM56_11900 PF01636 Phosphotransferase enzyme family XM56_11905 PF13036 Protein of unknown function (DUF3897) XM56_11910 PF07233 Protein of unknown function (DUF1425) XM56_11915 PF01230 HIT domain XM56_11920 PF08501 Shikimate dehydrogenase substrate binding domain XM56_11925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_11925 PF12793 XM56_11925 XM56_11930 PF04055 Radical SAM superfamily XM56_11930 PF13394 4Fe-4S single cluster domain XM56_11935 PF13437 HlyD family secretion protein XM56_11940 PF00005 ABC transporter XM56_11940 PF00664 ABC transporter transmembrane region XM56_11940 PF03412 Peptidase C39 family XM56_11950 PF00367 phosphotransferase system, EIIB XM56_11950 PF02378 Phosphotransferase system, EIIC XM56_11955 PF01026 TatD related DNase XM56_11960 PF09115 DNA polymerase III, delta subunit, C terminal XM56_11960 PF13177 DNA polymerase III, delta subunit XM56_11965 PF02223 Thymidylate kinase XM56_11970 PF02618 YceG-like family XM56_11975 PF01063 Aminotransferase class IV XM56_11980 PF00109 Beta-ketoacyl synthase, N-terminal domain XM56_11980 PF02801 Beta-ketoacyl synthase, C-terminal domain XM56_11985 PF00550 Phosphopantetheine attachment site XM56_11990 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_11995 PF00698 Acyl transferase domain XM56_12000 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal XM56_12000 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III XM56_12005 PF02504 Fatty acid synthesis protein XM56_12010 PF01783 Ribosomal L32p protein family XM56_12015 PF02620 XM56_12015 XM56_12020 PF02545 Maf-like protein XM56_12025 PF00849 RNA pseudouridylate synthase XM56_12025 PF01479 S4 domain XM56_12030 PF00575 S1 RNA binding domain XM56_12030 PF10150 Ribonuclease E/G family XM56_12030 PF12111 Polyribonucleotide phosphorylase C terminal XM56_12035 PF03992 Antibiotic biosynthesis monooxygenase XM56_12040 PF01979 Amidohydrolase family XM56_12045 PF06183 DinI-like family XM56_12050 PF13991 XM56_12050 XM56_12055 PF01266 FAD dependent oxidoreductase XM56_12060 PF00196 Bacterial regulatory proteins, luxR family XM56_12065 PF01594 XM56_12065 XM56_12070 PF00581 Rhodanese-like domain XM56_12070 PF12368 XM56_12070 XM56_12080 PF00384 Molybdopterin oxidoreductase XM56_12080 PF01568 Molydopterin dinucleotide binding domain XM56_12085 PF03916 XM56_12085 XM56_12090 PF13247 4Fe-4S dicluster domain XM56_12095 PF00512 His Kinase A (phospho-acceptor) domain XM56_12095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_12095 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein XM56_12100 PF00072 Response regulator receiver domain XM56_12100 PF00196 Bacterial regulatory proteins, luxR family XM56_12105 PF03279 XM56_12105 XM56_12120 PF07681 XM56_12120 XM56_12130 PF00854 POT family XM56_12135 PF01548 XM56_12135 XM56_12135 PF02371 XM56_12135 XM56_12150 PF00535 Glycosyl transferase family 2 XM56_12155 PF04349 Periplasmic glucan biosynthesis protein, MdoG XM56_12160 PF01757 XM56_12160 XM56_12170 PF01548 XM56_12170 XM56_12170 PF02371 XM56_12170 XM56_12175 PF00999 Sodium/hydrogen exchanger family XM56_12175 PF02080 TrkA-C domain XM56_12175 PF03471 Transporter associated domain XM56_12180 PF00892 EamA-like transporter family XM56_12185 PF00765 Autoinducer synthetase XM56_12190 PF00196 Bacterial regulatory proteins, luxR family XM56_12190 PF03472 Autoinducer binding domain XM56_12200 PF03918 Cytochrome C biogenesis protein XM56_12205 PF08534 Redoxin XM56_12210 PF01578 XM56_12210 XM56_12210 PF16327 XM56_12210 XM56_12215 PF03916 XM56_12215 XM56_12220 PF12800 4Fe-4S binding domain XM56_12220 PF13247 4Fe-4S dicluster domain XM56_12225 PF13435 Cytochrome c554 and c-prime XM56_12230 PF02335 Cytochrome c552 XM56_12240 PF04358 DsrC like protein XM56_12245 PF00708 Acylphosphatase XM56_12250 PF07784 XM56_12250 XM56_12260 PF10672 S-adenosylmethionine-dependent methyltransferase XM56_12265 PF08755 Hemimethylated DNA-binding protein YccV like XM56_12270 PF13380 CoA binding domain XM56_12275 PF09829 XM56_12275 XM56_12280 PF02142 MGS-like domain XM56_12285 PF00580 UvrD/REP helicase N-terminal domain XM56_12285 PF12462 XM56_12285 XM56_12285 PF13361 UvrD-like helicase C-terminal domain XM56_12290 PF03733 XM56_12290 XM56_12295 PF12805 XM56_12295 XM56_12295 PF13515 XM56_12295 XM56_12300 PF04993 TfoX N-terminal domain XM56_12300 PF04994 TfoX C-terminal domain XM56_12305 PF03846 Cell division inhibitor SulA XM56_12310 PF00691 OmpA family XM56_12310 PF01389 OmpA-like transmembrane domain XM56_12315 PF06303 Organiser of macrodomain of Terminus of chromosome XM56_12315 PF17414 XM56_12315 XM56_12320 PF05362 Lon protease (S16) C-terminal proteolytic domain XM56_12320 PF13654 AAA domain XM56_12325 PF07977 FabA-like domain XM56_12330 PF01548 XM56_12330 XM56_12330 PF02371 XM56_12330 XM56_12335 PF01638 HxlR-like helix-turn-helix XM56_12340 PF00109 Beta-ketoacyl synthase, N-terminal domain XM56_12340 PF02801 Beta-ketoacyl synthase, C-terminal domain XM56_12345 PF03886 Protein of unknown function (DUF330) XM56_12350 PF02470 XM56_12350 XM56_12355 PF04403 XM56_12355 XM56_12360 PF00005 ABC transporter XM56_12360 PF12848 ABC transporter XM56_12360 PF16326 XM56_12360 XM56_12365 PF01170 Putative RNA methylase family UPF0020 XM56_12365 PF02926 THUMP domain XM56_12365 PF10672 S-adenosylmethionine-dependent methyltransferase XM56_12370 PF00111 2Fe-2S iron-sulfur cluster binding domain XM56_12370 PF03473 MOSC domain XM56_12370 PF03476 MOSC N-terminal beta barrel domain XM56_12375 PF07126 XM56_12375 XM56_12380 PF01180 Dihydroorotate dehydrogenase XM56_12385 PF01433 Peptidase family M1 XM56_12385 PF11940 Domain of unknown function (DUF3458) XM56_12385 PF17432 XM56_12385 XM56_12390 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family XM56_12395 PF00152 tRNA synthetases class II (D, K and N) XM56_12395 PF01336 OB-fold nucleic acid binding domain XM56_12400 PF00267 Gram-negative porin XM56_12405 PF00155 Aminotransferase class I and II XM56_12415 PF00563 EAL domain XM56_12415 PF12792 XM56_12415 XM56_12420 PF00753 Metallo-beta-lactamase superfamily XM56_12425 PF05951 XM56_12425 XM56_12430 PF01471 Putative peptidoglycan binding domain XM56_12430 PF03734 L,D-transpeptidase catalytic domain XM56_12435 PF04310 MukB N-terminal XM56_12435 PF13558 Putative exonuclease SbcCD, C subunit XM56_12435 PF16330 XM56_12435 XM56_12440 PF04288 MukE-like family XM56_12445 PF03882 KicB killing factor XM56_12445 PF17192 XM56_12445 XM56_12445 PF17193 XM56_12445 XM56_12450 PF13847 Methyltransferase domain XM56_12455 PF02698 DUF218 domain XM56_12460 PF03881 Fructosamine kinase XM56_12465 PF02348 Cytidylyltransferase XM56_12470 PF03966 Trm112p-like protein XM56_12475 PF00313 'Cold-shock' DNA-binding domain XM56_12480 PF00313 'Cold-shock' DNA-binding domain XM56_12485 PF07063 Domain of unknown function (DUF1338) XM56_12490 PF02606 Tetraacyldisaccharide-1-P 4'-kinase XM56_12495 PF00005 ABC transporter XM56_12495 PF00664 ABC transporter transmembrane region XM56_12500 PF00753 Metallo-beta-lactamase superfamily XM56_12500 PF03772 XM56_12500 XM56_12500 PF13567 XM56_12500 XM56_12505 PF00216 Bacterial DNA-binding protein XM56_12510 PF00575 S1 RNA binding domain XM56_12515 PF02224 Cytidylate kinase XM56_12520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) XM56_12525 PF00266 Aminotransferase class-V XM56_12530 PF04239 Protein of unknown function (DUF421) XM56_12535 PF00710 Asparaginase XM56_12540 PF02624 YcaO-like family XM56_12545 PF01226 Formate/nitrite transporter XM56_12550 PF01228 Glycine radical XM56_12550 PF02901 Pyruvate formate lyase XM56_12555 PF04055 Radical SAM superfamily XM56_12555 PF13353 4Fe-4S single cluster domain XM56_12560 PF07690 Major Facilitator Superfamily XM56_12565 PF05598 XM56_12565 XM56_12565 PF13751 XM56_12565 XM56_12570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XM56_12570 PF02403 Seryl-tRNA synthetase N-terminal domain XM56_12575 PF00004 ATPase family associated with various cellular activities (AAA) XM56_12575 PF12002 MgsA AAA+ ATPase C terminal XM56_12575 PF16193 XM56_12575 XM56_12580 PF03548 Outer membrane lipoprotein carrier protein LolA XM56_12585 PF01580 FtsK/SpoIIIE family XM56_12585 PF09397 Ftsk gamma domain XM56_12585 PF13491 XM56_12585 XM56_12590 PF01037 AsnC family XM56_12590 PF13412 Winged helix-turn-helix DNA-binding XM56_12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_12600 PF00005 ABC transporter XM56_12600 PF00664 ABC transporter transmembrane region XM56_12605 PF00005 ABC transporter XM56_12605 PF00664 ABC transporter transmembrane region XM56_12610 PF03588 Leucyl/phenylalanyl-tRNA protein transferase XM56_12615 PF01176 Translation initiation factor 1A / IF-1 XM56_12620 PF00004 ATPase family associated with various cellular activities (AAA) XM56_12620 PF02861 Clp amino terminal domain XM56_12620 PF07724 AAA domain (Cdc48 subfamily) XM56_12620 PF10431 C-terminal, D2-small domain, of ClpB protein XM56_12625 PF02617 ATP-dependent Clp protease adaptor protein ClpS XM56_12630 PF00313 'Cold-shock' DNA-binding domain XM56_12635 PF00005 ABC transporter XM56_12635 PF02687 XM56_12635 XM56_12635 PF12704 MacB-like periplasmic core domain XM56_12640 PF16576 XM56_12640 XM56_12645 PF04393 XM56_12645 XM56_12650 PF11398 Protein of unknown function (DUF2813) XM56_12655 PF03956 XM56_12655 XM56_12660 PF03063 Prismane/CO dehydrogenase family XM56_12665 PF00111 2Fe-2S iron-sulfur cluster binding domain XM56_12665 PF00175 Oxidoreductase NAD-binding domain XM56_12665 PF00970 Oxidoreductase FAD-binding domain XM56_12670 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_12670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_12670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_12675 PF04072 Leucine carboxyl methyltransferase XM56_12680 PF01212 Beta-eliminating lyase XM56_12685 PF11066 XM56_12685 XM56_12685 PF13460 NADH(P)-binding XM56_12690 PF01370 NAD dependent epimerase/dehydratase family XM56_12695 PF12883 Protein of unknown function (DUF3828) XM56_12700 PF00005 ABC transporter XM56_12705 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_12710 PF00528 Binding-protein-dependent transport system inner membrane component XM56_12715 PF00528 Binding-protein-dependent transport system inner membrane component XM56_12720 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_12725 PF05958 tRNA (Uracil-5-)-methyltransferase XM56_12730 PF10767 XM56_12730 XM56_12735 PF00528 Binding-protein-dependent transport system inner membrane component XM56_12740 PF00528 Binding-protein-dependent transport system inner membrane component XM56_12745 PF00005 ABC transporter XM56_12745 PF08402 TOBE domain XM56_12750 PF13416 Bacterial extracellular solute-binding protein XM56_12755 PF10722 Putative bacterial sensory transduction regulator XM56_12760 PF07214 XM56_12760 XM56_12765 PF00462 Glutaredoxin XM56_12770 PF02080 TrkA-C domain XM56_12770 PF06826 XM56_12770 XM56_12775 PF01569 PAP2 superfamily XM56_12780 PF01569 PAP2 superfamily XM56_12785 PF01791 DeoC/LacD family aldolase XM56_12790 PF00455 XM56_12790 XM56_12790 PF08220 DeoR-like helix-turn-helix domain XM56_12795 PF03222 Tryptophan/tyrosine permease family XM56_12800 PF03313 XM56_12800 XM56_12800 PF03315 Serine dehydratase beta chain XM56_12805 PF01548 XM56_12805 XM56_12805 PF02371 XM56_12805 XM56_12810 PF00768 D-alanyl-D-alanine carboxypeptidase XM56_12810 PF07943 Penicillin-binding protein 5, C-terminal domain XM56_12815 PF00291 Pyridoxal-phosphate dependent enzyme XM56_12815 PF00571 CBS domain XM56_12820 PF01053 Cys/Met metabolism PLP-dependent enzyme XM56_12825 PF00528 Binding-protein-dependent transport system inner membrane component XM56_12830 PF00005 ABC transporter XM56_12830 PF09383 NIL domain XM56_12835 PF03180 NLPA lipoprotein XM56_12840 PF03171 2OG-Fe(II) oxygenase superfamily XM56_12840 PF14226 non-haem dioxygenase in morphine synthesis N-terminal XM56_12845 PF12710 haloacid dehalogenase-like hydrolase XM56_12850 PF00043 Glutathione S-transferase, C-terminal domain XM56_12850 PF02798 Glutathione S-transferase, N-terminal domain XM56_12855 PF00593 TonB dependent receptor XM56_12855 PF07715 TonB-dependent Receptor Plug Domain XM56_12860 PF00005 ABC transporter XM56_12865 PF01032 FecCD transport family XM56_12870 PF00324 Amino acid permease XM56_12875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_12875 PF03466 LysR substrate binding domain XM56_12885 PF00877 NlpC/P60 family XM56_12885 PF12912 NLPC_P60 stabilising domain, N term XM56_12885 PF12913 SH3 domain of the SH3b1 type XM56_12885 PF12914 SH3 domain of SH3b2 type XM56_12890 PF03601 XM56_12890 XM56_12895 PF01261 Xylose isomerase-like TIM barrel XM56_12900 PF00577 Outer membrane usher protein XM56_12900 PF13953 PapC C-terminal domain XM56_12900 PF13954 PapC N-terminal domain XM56_12905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_12905 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_12915 PF17550 XM56_12915 XM56_12920 PF00486 Transcriptional regulatory protein, C terminal XM56_12925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_12925 PF02378 Phosphotransferase system, EIIC XM56_12930 PF00294 pfkB family carbohydrate kinase XM56_12935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_12935 PF00381 PTS HPr component phosphorylation site XM56_12940 PF00293 NUDIX domain XM56_12945 PF03264 NapC/NirT cytochrome c family, N-terminal region XM56_12950 PF00384 Molybdopterin oxidoreductase XM56_12950 PF01568 Molydopterin dinucleotide binding domain XM56_12955 PF03692 XM56_12955 XM56_12960 PF03222 Tryptophan/tyrosine permease family XM56_12965 PF01132 Elongation factor P (EF-P) OB domain XM56_12965 PF08207 Elongation factor P (EF-P) KOW-like domain XM56_12965 PF09285 Elongation factor P, C-terminal XM56_12970 PF03786 D-mannonate dehydratase (UxuA) XM56_12980 PF01232 Mannitol dehydrogenase Rossmann domain XM56_12980 PF08125 Mannitol dehydrogenase C-terminal domain XM56_12985 PF00392 Bacterial regulatory proteins, gntR family XM56_12985 PF07729 FCD domain XM56_12995 PF02492 CobW/HypB/UreG, nucleotide-binding domain XM56_12995 PF07683 Cobalamin synthesis protein cobW C-terminal domain XM56_13000 PF01569 PAP2 superfamily XM56_13005 PF00877 NlpC/P60 family XM56_13015 PF00563 EAL domain XM56_13015 PF12792 XM56_13015 XM56_13020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_13025 PF00528 Binding-protein-dependent transport system inner membrane component XM56_13030 PF00528 Binding-protein-dependent transport system inner membrane component XM56_13030 PF12911 XM56_13030 XM56_13035 PF00005 ABC transporter XM56_13035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region XM56_13040 PF13989 XM56_13040 XM56_13045 PF07690 Major Facilitator Superfamily XM56_13050 PF00849 RNA pseudouridylate synthase XM56_13050 PF01479 S4 domain XM56_13055 PF00271 Helicase conserved C-terminal domain XM56_13055 PF04851 Type III restriction enzyme, res subunit XM56_13060 PF01386 Ribosomal L25p family XM56_13065 PF04245 XM56_13065 XM56_13070 PF07208 Protein of unknown function (DUF1414) XM56_13075 PF00884 Sulfatase XM56_13075 PF11893 XM56_13075 XM56_13090 PF07377 Protein of unknown function (DUF1493) XM56_13095 PF00872 XM56_13095 XM56_13100 PF06551 XM56_13100 XM56_13110 PF13276 XM56_13110 XM56_13120 PF00891 O-methyltransferase XM56_13125 PF00194 Eukaryotic-type carbonic anhydrase XM56_13130 PF00232 Glycosyl hydrolase family 1 XM56_13135 PF00367 phosphotransferase system, EIIB XM56_13135 PF02378 Phosphotransferase system, EIIC XM56_13140 PF01380 SIS domain XM56_13140 PF01418 Helix-turn-helix domain, rpiR family XM56_13150 PF10828 XM56_13150 XM56_13160 PF06530 XM56_13160 XM56_13165 PF00717 Peptidase S24-like XM56_13165 PF01381 Helix-turn-helix XM56_13170 PF06183 DinI-like family XM56_13175 PF01278 Omptin family XM56_13180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_13180 PF00672 HAMP domain XM56_13180 PF02743 Cache domain XM56_13185 PF12706 Beta-lactamase superfamily domain XM56_13190 PF13347 MFS/sugar transport protein XM56_13195 PF00144 Beta-lactamase XM56_13210 PF00267 Gram-negative porin XM56_13215 PF00529 HlyD family secretion protein XM56_13225 PF13533 Biotin-lipoyl like XM56_13230 PF07690 Major Facilitator Superfamily XM56_13235 PF01627 Hpt domain XM56_13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_13235 PF16359 XM56_13235 XM56_13240 PF00072 Response regulator receiver domain XM56_13240 PF00196 Bacterial regulatory proteins, luxR family XM56_13245 PF00072 Response regulator receiver domain XM56_13245 PF00512 His Kinase A (phospho-acceptor) domain XM56_13245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_13245 PF09456 RcsC Alpha-Beta-Loop (ABL) XM56_13250 PF01548 XM56_13250 XM56_13250 PF02371 XM56_13250 XM56_13255 PF00521 DNA gyrase/topoisomerase IV, subunit A XM56_13255 PF03989 DNA gyrase C-terminal domain, beta-propeller XM56_13260 PF13489 Methyltransferase domain XM56_13265 PF00317 Ribonucleotide reductase, all-alpha domain XM56_13265 PF02867 Ribonucleotide reductase, barrel domain XM56_13265 PF03477 ATP cone domain XM56_13270 PF00268 Ribonucleotide reductase, small chain XM56_13275 PF00111 2Fe-2S iron-sulfur cluster binding domain XM56_13280 PF03974 Ecotin XM56_13285 PF00082 Subtilase family XM56_13285 PF01483 Proprotein convertase P-domain XM56_13285 PF08548 Peptidase M10 serralysin C terminal XM56_13295 PF00994 Probable molybdopterin binding domain XM56_13300 PF03222 Tryptophan/tyrosine permease family XM56_13305 PF07437 XM56_13305 XM56_13310 PF00199 Catalase XM56_13310 PF06628 Catalase-related immune-responsive XM56_13315 PF00501 AMP-binding enzyme XM56_13315 PF13193 AMP-binding enzyme C-terminal domain XM56_13320 PF13378 Enolase C-terminal domain-like XM56_13325 PF00378 Enoyl-CoA hydratase/isomerase family XM56_13330 PF12697 Alpha/beta hydrolase family XM56_13335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_13335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_13335 PF16582 XM56_13335 XM56_13340 PF00425 chorismate binding enzyme XM56_13345 PF00872 XM56_13345 XM56_13350 PF05957 XM56_13350 XM56_13360 PF03928 Domain of unknown function (DUF336) XM56_13365 PF07690 Major Facilitator Superfamily XM56_13370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XM56_13370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_13380 PF00106 short chain dehydrogenase XM56_13385 PF01202 Shikimate kinase XM56_13390 PF04074 Domain of unknown function (DUF386) XM56_13395 PF06496 XM56_13395 XM56_13405 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_13410 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_13415 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains XM56_13415 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus XM56_13420 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L XM56_13425 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 XM56_13430 PF12838 4Fe-4S dicluster domain XM56_13435 PF00146 NADH dehydrogenase XM56_13440 PF00384 Molybdopterin oxidoreductase XM56_13440 PF01568 Molydopterin dinucleotide binding domain XM56_13440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XM56_13440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XM56_13440 PF13510 2Fe-2S iron-sulfur cluster binding domain XM56_13445 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit XM56_13445 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XM56_13450 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin XM56_13455 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit XM56_13455 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit XM56_13460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit XM56_13465 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 XM56_13470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_13470 PF03466 LysR substrate binding domain XM56_13475 PF00155 Aminotransferase class I and II XM56_13480 PF13023 HD domain XM56_13485 PF02080 TrkA-C domain XM56_13485 PF03600 Citrate transporter XM56_13495 PF13419 Haloacid dehalogenase-like hydrolase XM56_13500 PF03887 YfbU domain XM56_13505 PF04217 XM56_13505 XM56_13510 PF00871 Acetokinase family XM56_13515 PF01515 Phosphate acetyl/butaryl transferase XM56_13515 PF07085 DRTGG domain XM56_13515 PF13500 AAA domain XM56_13520 PF00356 Bacterial regulatory proteins, lacI family XM56_13520 PF13377 Periplasmic binding protein-like domain XM56_13525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 XM56_13530 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_13535 PF03611 XM56_13535 XM56_13540 PF01548 XM56_13540 XM56_13540 PF02371 XM56_13540 XM56_13545 PF00293 NUDIX domain XM56_13550 PF12850 Calcineurin-like phosphoesterase superfamily domain XM56_13555 PF00563 EAL domain XM56_13560 PF01370 NAD dependent epimerase/dehydratase family XM56_13560 PF08338 Domain of unknown function (DUF1731) XM56_13570 PF00005 ABC transporter XM56_13575 PF00528 Binding-protein-dependent transport system inner membrane component XM56_13580 PF00528 Binding-protein-dependent transport system inner membrane component XM56_13585 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_13590 PF02441 Flavoprotein XM56_13595 PF00156 Phosphoribosyl transferase domain XM56_13595 PF13522 Glutamine amidotransferase domain XM56_13600 PF02674 XM56_13600 XM56_13605 PF05036 Sporulation related domain XM56_13610 PF02875 Mur ligase family, glutamate ligase domain XM56_13610 PF08245 Mur ligase middle domain XM56_13615 PF01039 Carboxyl transferase domain XM56_13620 PF09335 XM56_13620 XM56_13625 PF01416 tRNA pseudouridine synthase XM56_13630 PF01118 Semialdehyde dehydrogenase, NAD binding domain XM56_13630 PF02774 Semialdehyde dehydrogenase, dimerisation domain XM56_13635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain XM56_13635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XM56_13635 PF11890 Domain of unknown function (DUF3410) XM56_13640 PF07883 Cupin domain XM56_13640 PF12833 Helix-turn-helix domain XM56_13645 PF00892 EamA-like transporter family XM56_13650 PF00892 EamA-like transporter family XM56_13655 PF00155 Aminotransferase class I and II XM56_13655 PF00392 Bacterial regulatory proteins, gntR family XM56_13660 PF00578 AhpC/TSA family XM56_13665 PF13462 Thioredoxin XM56_13670 PF02683 XM56_13670 XM56_13670 PF11412 Disulphide bond corrector protein DsbC XM56_13670 PF13899 Thioredoxin-like XM56_13685 PF03600 Citrate transporter XM56_13690 PF00328 Histidine phosphatase superfamily (branch 2) XM56_13695 PF00356 Bacterial regulatory proteins, lacI family XM56_13695 PF13377 Periplasmic binding protein-like domain XM56_13700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_13705 PF02378 Phosphotransferase system, EIIC XM56_13710 PF00232 Glycosyl hydrolase family 1 XM56_13715 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit XM56_13720 PF02264 LamB porin XM56_13725 PF01177 Asp/Glu/Hydantoin racemase XM56_13730 PF00990 GGDEF domain XM56_13730 PF08447 PAS fold XM56_13735 PF00109 Beta-ketoacyl synthase, N-terminal domain XM56_13735 PF02801 Beta-ketoacyl synthase, C-terminal domain XM56_13740 PF01266 FAD dependent oxidoreductase XM56_13740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase XM56_13745 PF08891 XM56_13745 XM56_13750 PF04315 XM56_13750 XM56_13755 PF01925 XM56_13755 XM56_13760 PF03411 Penicillin-insensitive murein endopeptidase XM56_13765 PF01264 Chorismate synthase XM56_13770 PF05175 Methyltransferase small domain XM56_13775 PF01713 Smr domain XM56_13780 PF00300 Histidine phosphatase superfamily (branch 1) XM56_13785 PF00378 Enoyl-CoA hydratase/isomerase family XM56_13785 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XM56_13785 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XM56_13790 PF00108 Thiolase, N-terminal domain XM56_13790 PF02803 Thiolase, C-terminal domain XM56_13795 PF04175 Protein of unknown function (DUF406) XM56_13800 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) XM56_13805 PF04333 XM56_13805 XM56_13810 PF14559 Tetratricopeptide repeat XM56_13815 PF03918 Cytochrome C biogenesis protein XM56_13820 PF08534 Redoxin XM56_13825 PF01578 XM56_13825 XM56_13825 PF16327 XM56_13825 XM56_13830 PF03100 CcmE XM56_13835 PF04995 XM56_13835 XM56_13840 PF01578 XM56_13840 XM56_13845 PF03379 XM56_13845 XM56_13850 PF00005 ABC transporter XM56_13855 PF01548 XM56_13855 XM56_13855 PF02371 XM56_13855 XM56_13860 PF01226 Formate/nitrite transporter XM56_13870 PF00589 Phage integrase family XM56_13870 PF13356 Domain of unknown function (DUF4102) XM56_13875 PF11185 XM56_13875 XM56_13880 PF11185 XM56_13880 XM56_13885 PF04606 XM56_13885 XM56_13890 PF06048 XM56_13890 XM56_13890 PF08273 Zinc-binding domain of primase-helicase XM56_13890 PF13362 Toprim domain XM56_13905 PF05534 XM56_13905 XM56_13910 PF05929 XM56_13910 XM56_13915 PF05125 XM56_13915 XM56_13925 PF05930 Prophage CP4-57 regulatory protein (AlpA) XM56_13935 PF03831 PhnA protein XM56_13935 PF08274 PhnA Zinc-Ribbon XM56_13940 PF03551 Transcriptional regulator PadR-like family XM56_13945 PF12977 Domain of Unknown Function with PDB structure (DUF3861) XM56_13950 PF00232 Glycosyl hydrolase family 1 XM56_13955 PF00367 phosphotransferase system, EIIB XM56_13955 PF02378 Phosphotransferase system, EIIC XM56_13960 PF00356 Bacterial regulatory proteins, lacI family XM56_13960 PF13377 Periplasmic binding protein-like domain XM56_13965 PF04264 YceI-like domain XM56_13970 PF01292 Prokaryotic cytochrome b561 XM56_13975 PF07859 alpha/beta hydrolase fold XM56_13985 PF03886 Protein of unknown function (DUF330) XM56_13990 PF02470 XM56_13990 XM56_13995 PF00005 ABC transporter XM56_14000 PF02405 XM56_14000 XM56_14005 PF07690 Major Facilitator Superfamily XM56_14010 PF00440 Bacterial regulatory proteins, tetR family XM56_14010 PF13977 Bacterial transcriptional repressor XM56_14020 PF01548 XM56_14020 XM56_14020 PF02371 XM56_14020 XM56_14025 PF07969 Amidohydrolase family XM56_14030 PF00324 Amino acid permease XM56_14035 PF13406 Transglycosylase SLT domain XM56_14040 PF13343 Bacterial extracellular solute-binding protein XM56_14045 PF00528 Binding-protein-dependent transport system inner membrane component XM56_14050 PF00005 ABC transporter XM56_14055 PF01810 XM56_14055 XM56_14060 PF09900 XM56_14060 XM56_14065 PF15970 XM56_14065 XM56_14070 PF01292 Prokaryotic cytochrome b561 XM56_14075 PF00155 Aminotransferase class I and II XM56_14080 PF13302 Acetyltransferase (GNAT) domain XM56_14085 PF07350 Protein of unknown function (DUF1479) XM56_14090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_14090 PF06580 XM56_14090 XM56_14090 PF07694 5TMR of 5TMR-LYT XM56_14095 PF00072 Response regulator receiver domain XM56_14095 PF04397 LytTr DNA-binding domain XM56_14100 PF07690 Major Facilitator Superfamily XM56_14105 PF01548 XM56_14105 XM56_14105 PF02371 XM56_14105 XM56_14110 PF02685 Glucokinase XM56_14115 PF05232 XM56_14115 XM56_14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_14120 PF03466 LysR substrate binding domain XM56_14125 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_14125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_14125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_14130 PF00248 Aldo/keto reductase family XM56_14135 PF10697 XM56_14135 XM56_14140 PF01566 XM56_14140 XM56_14145 PF01773 Na+ dependent nucleoside transporter N-terminus XM56_14145 PF07662 Na+ dependent nucleoside transporter C-terminus XM56_14145 PF07670 Nucleoside recognition XM56_14160 PF00749 tRNA synthetases class I (E and Q), catalytic domain XM56_14180 PF06042 Bacterial protein of unknown function (DUF925) XM56_14185 PF00992 Troponin XM56_14185 PF14282 XM56_14185 XM56_14190 PF12843 XM56_14190 XM56_14195 PF00533 BRCA1 C Terminus (BRCT) domain XM56_14195 PF01653 NAD-dependent DNA ligase adenylation domain XM56_14195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain XM56_14195 PF03120 NAD-dependent DNA ligase OB-fold domain XM56_14195 PF12826 Helix-hairpin-helix motif XM56_14195 PF14520 Helix-hairpin-helix domain XM56_14200 PF04354 ZipA, C-terminal FtsZ-binding domain XM56_14205 PF07264 Etoposide-induced protein 2 XM56_14210 PF00291 Pyridoxal-phosphate dependent enzyme XM56_14215 PF00381 PTS HPr component phosphorylation site XM56_14220 PF00391 PEP-utilising enzyme, mobile domain XM56_14220 PF02896 PEP-utilising enzyme, TIM barrel domain XM56_14220 PF05524 PEP-utilising enzyme, N-terminal XM56_14225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 XM56_14230 PF00512 His Kinase A (phospho-acceptor) domain XM56_14230 PF00672 HAMP domain XM56_14230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_14235 PF00072 Response regulator receiver domain XM56_14235 PF00486 Transcriptional regulatory protein, C terminal XM56_14240 PF16576 XM56_14240 XM56_14245 PF00005 ABC transporter XM56_14245 PF02687 XM56_14245 XM56_14245 PF12704 MacB-like periplasmic core domain XM56_14250 PF00291 Pyridoxal-phosphate dependent enzyme XM56_14255 PF00005 ABC transporter XM56_14260 PF00528 Binding-protein-dependent transport system inner membrane component XM56_14265 PF00528 Binding-protein-dependent transport system inner membrane component XM56_14270 PF13531 Bacterial extracellular solute-binding protein XM56_14275 PF07690 Major Facilitator Superfamily XM56_14280 PF01380 SIS domain XM56_14280 PF01418 Helix-turn-helix domain, rpiR family XM56_14285 PF04074 Domain of unknown function (DUF386) XM56_14290 PF00480 ROK family XM56_14295 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase XM56_14300 PF00701 Dihydrodipicolinate synthetase family XM56_14305 PF01548 XM56_14305 XM56_14305 PF02371 XM56_14305 XM56_14310 PF04261 Dyp-type peroxidase family XM56_14315 PF06572 Protein of unknown function (DUF1131) XM56_14320 PF04076 Bacterial OB fold (BOF) protein XM56_14325 PF00583 Acetyltransferase (GNAT) family XM56_14330 PF01218 Coproporphyrinogen III oxidase XM56_14335 PF02639 XM56_14335 XM56_14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_14345 PF01548 XM56_14345 XM56_14345 PF02371 XM56_14345 XM56_14350 PF00390 Malic enzyme, N-terminal domain XM56_14350 PF01515 Phosphate acetyl/butaryl transferase XM56_14350 PF03949 Malic enzyme, NAD binding domain XM56_14355 PF00293 NUDIX domain XM56_14360 PF03264 NapC/NirT cytochrome c family, N-terminal region XM56_14365 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) XM56_14370 PF00384 Molybdopterin oxidoreductase XM56_14370 PF01568 Molydopterin dinucleotide binding domain XM56_14370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain XM56_14370 PF10518 TAT (twin-arginine translocation) pathway signal sequence XM56_14375 PF03927 NapD protein XM56_14380 PF12838 4Fe-4S dicluster domain XM56_14380 PF13187 4Fe-4S dicluster domain XM56_14385 PF00072 Response regulator receiver domain XM56_14385 PF00196 Bacterial regulatory proteins, luxR family XM56_14390 PF09904 Winged helix-turn helix XM56_14395 PF00873 AcrB/AcrD/AcrF family XM56_14400 PF02624 YcaO-like family XM56_14405 PF12688 Tetratrico peptide repeat XM56_14410 PF03960 ArsC family XM56_14415 PF01546 Peptidase family M20/M25/M40 XM56_14415 PF07687 Peptidase dimerisation domain XM56_14420 PF02557 D-alanyl-D-alanine carboxypeptidase XM56_14425 PF13980 XM56_14425 XM56_14435 PF13505 Outer membrane protein beta-barrel domain XM56_14450 PF01548 XM56_14450 XM56_14450 PF02371 XM56_14450 XM56_14455 PF03245 XM56_14455 XM56_14465 PF02230 Phospholipase/Carboxylesterase XM56_14480 PF05127 Helicase XM56_14480 PF08351 Domain of unknown function (DUF1726) XM56_14480 PF13718 GNAT acetyltransferase 2 XM56_14480 PF17176 XM56_14480 XM56_14485 PF04284 XM56_14485 XM56_14490 PF04228 XM56_14490 XM56_14495 PF01259 SAICAR synthetase XM56_14500 PF06804 NlpB/DapX lipoprotein XM56_14505 PF00701 Dihydrodipicolinate synthetase family XM56_14510 PF13740 ACT domain XM56_14515 PF00578 AhpC/TSA family XM56_14520 PF01594 XM56_14520 XM56_14525 PF01435 Peptidase family M48 XM56_14525 PF14559 Tetratricopeptide repeat XM56_14530 PF03960 ArsC family XM56_14535 PF00308 Bacterial dnaA protein XM56_14540 PF00860 Permease family XM56_14545 PF14681 Uracil phosphoribosyltransferase XM56_14550 PF00586 AIR synthase related protein, N-terminal domain XM56_14550 PF02769 AIR synthase related protein, C-terminal domain XM56_14555 PF00551 Formyl transferase XM56_14560 PF13302 Acetyltransferase (GNAT) domain XM56_14570 PF00005 ABC transporter XM56_14575 PF00528 Binding-protein-dependent transport system inner membrane component XM56_14580 PF00528 Binding-protein-dependent transport system inner membrane component XM56_14585 PF02503 Polyphosphate kinase middle domain XM56_14585 PF13089 Polyphosphate kinase N-terminal domain XM56_14585 PF13090 Polyphosphate kinase C-terminal domain XM56_14590 PF02541 Ppx/GppA phosphatase family XM56_14595 PF11119 XM56_14595 XM56_14600 PF00571 CBS domain XM56_14600 PF01769 Divalent cation transporter XM56_14600 PF03448 MgtE intracellular N domain XM56_14605 PF00563 EAL domain XM56_14605 PF00990 GGDEF domain XM56_14605 PF05231 XM56_14605 XM56_14605 PF08447 PAS fold XM56_14605 PF08448 PAS fold XM56_14610 PF00012 Hsp70 protein XM56_14615 PF13437 HlyD family secretion protein XM56_14615 PF13533 Biotin-lipoyl like XM56_14620 PF00873 AcrB/AcrD/AcrF family XM56_14625 PF00873 AcrB/AcrD/AcrF family XM56_14630 PF07690 Major Facilitator Superfamily XM56_14635 PF00512 His Kinase A (phospho-acceptor) domain XM56_14635 PF00672 HAMP domain XM56_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_14640 PF00072 Response regulator receiver domain XM56_14640 PF00486 Transcriptional regulatory protein, C terminal XM56_14645 PF07411 Domain of unknown function (DUF1508) XM56_14650 PF01136 XM56_14650 XM56_14650 PF16325 XM56_14650 XM56_14655 PF00781 Diacylglycerol kinase catalytic domain XM56_14660 PF03608 XM56_14660 XM56_14665 PF03612 XM56_14665 XM56_14665 PF07663 XM56_14665 XM56_14670 PF03829 PTS system glucitol/sorbitol-specific IIA component XM56_14675 PF00106 short chain dehydrogenase XM56_14680 PF06923 XM56_14680 XM56_14685 PF00455 XM56_14685 XM56_14685 PF08220 DeoR-like helix-turn-helix domain XM56_14690 PF00571 CBS domain XM56_14690 PF01380 SIS domain XM56_14695 PF08816 Inhibitor of vertebrate lysozyme (Ivy) XM56_14705 PF08543 Phosphomethylpyrimidine kinase XM56_14715 PF01548 XM56_14715 XM56_14715 PF02371 XM56_14715 XM56_14720 PF00034 Cytochrome c XM56_14720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III XM56_14725 PF00890 FAD binding domain XM56_14725 PF05199 GMC oxidoreductase XM56_14730 PF12318 XM56_14730 XM56_14740 PF00117 Glutamine amidotransferase class-I XM56_14740 PF00958 GMP synthase C terminal domain XM56_14740 PF02540 NAD synthase XM56_14745 PF00478 IMP dehydrogenase / GMP reductase domain XM56_14745 PF00571 CBS domain XM56_14750 PF02601 XM56_14750 XM56_14750 PF13742 XM56_14750 XM56_14755 PF07191 zinc-ribbons XM56_14760 PF03547 XM56_14760 XM56_14765 PF01548 XM56_14765 XM56_14765 PF02371 XM56_14765 XM56_14770 PF01926 50S ribosome-binding GTPase XM56_14770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal XM56_14780 PF13360 PQQ-like domain XM56_14785 PF09976 Tetratricopeptide repeat XM56_14790 PF03129 Anticodon binding domain XM56_14790 PF13393 Histidyl-tRNA synthetase XM56_14795 PF04551 GcpE protein XM56_14800 PF13413 Helix-turn-helix domain XM56_14800 PF13464 XM56_14800 XM56_14805 PF13181 Tetratricopeptide repeat XM56_14805 PF13431 Tetratricopeptide repeat XM56_14810 PF04055 Radical SAM superfamily XM56_14815 PF00334 Nucleoside diphosphate kinase XM56_14820 PF03995 Peptidase inhibitor family I36 XM56_14820 PF08964 Beta/Gamma crystallin XM56_14820 PF09101 Exotoxin A binding XM56_14825 PF00905 Penicillin binding protein transpeptidase domain XM56_14825 PF00912 Transglycosylase XM56_14825 PF06832 XM56_14825 XM56_14830 PF00207 Alpha-2-macroglobulin family XM56_14830 PF01835 MG2 domain XM56_14830 PF07703 Alpha-2-macroglobulin family N-terminal region XM56_14830 PF10569 Alpha-macro-globulin thiol-ester bond-forming region XM56_14830 PF11974 Alpha-2-macroglobulin MG1 domain XM56_14835 PF03212 Pertactin XM56_14835 PF03797 Autotransporter beta-domain XM56_14840 PF07179 XM56_14840 XM56_14840 PF14581 XM56_14840 XM56_14845 PF00883 Cytosol aminopeptidase family, catalytic domain XM56_14845 PF12404 XM56_14845 XM56_14850 PF04384 Iron-sulphur cluster assembly XM56_14855 PF00111 2Fe-2S iron-sulfur cluster binding domain XM56_14860 PF00012 Hsp70 protein XM56_14865 PF00226 DnaJ domain XM56_14865 PF07743 HSCB C-terminal oligomerisation domain XM56_14870 PF01521 Iron-sulphur cluster biosynthesis XM56_14875 PF01592 NifU-like N terminal domain XM56_14880 PF00266 Aminotransferase class-V XM56_14885 PF02082 Transcriptional regulator XM56_14890 PF00588 SpoU rRNA Methylase family XM56_14895 PF00459 Inositol monophosphatase family XM56_14900 PF03824 XM56_14900 XM56_14905 PF06226 XM56_14905 XM56_14910 PF00874 PRD domain XM56_14915 PF12832 MFS_1 like family XM56_14920 PF00464 Serine hydroxymethyltransferase XM56_14925 PF00042 Globin XM56_14925 PF00175 Oxidoreductase NAD-binding domain XM56_14925 PF00970 Oxidoreductase FAD-binding domain XM56_14930 PF14502 Helix-turn-helix domain XM56_14930 PF14503 YhfZ C-terminal domain XM56_14935 PF00874 PRD domain XM56_14940 PF01168 Alanine racemase, N-terminal domain XM56_14945 PF02126 Phosphotriesterase family XM56_14950 PF10941 XM56_14950 XM56_14955 PF10797 XM56_14955 XM56_14960 PF00543 Nitrogen regulatory protein P-II XM56_14965 PF00795 Carbon-nitrogen hydrolase XM56_14965 PF02540 NAD synthase XM56_14970 PF00072 Response regulator receiver domain XM56_14970 PF00158 Sigma-54 interaction domain XM56_14975 PF13942 XM56_14975 XM56_14980 PF00512 His Kinase A (phospho-acceptor) domain XM56_14980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_14990 PF02769 AIR synthase related protein, C-terminal domain XM56_14990 PF13507 CobB/CobQ-like glutamine amidotransferase domain XM56_14995 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_14995 PF01464 Transglycosylase SLT domain XM56_15000 PF14437 XM56_15000 XM56_15005 PF09925 XM56_15005 XM56_15010 PF12710 haloacid dehalogenase-like hydrolase XM56_15015 PF01380 SIS domain XM56_15020 PF01380 SIS domain XM56_15020 PF01418 Helix-turn-helix domain, rpiR family XM56_15025 PF12838 4Fe-4S dicluster domain XM56_15030 PF02447 XM56_15030 XM56_15035 PF01648 4'-phosphopantetheinyl transferase superfamily XM56_15040 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ XM56_15045 PF02565 Recombination protein O C terminal XM56_15045 PF11967 Recombination protein O N terminal XM56_15050 PF01926 50S ribosome-binding GTPase XM56_15050 PF07650 KH domain XM56_15055 PF00035 Double-stranded RNA binding motif XM56_15055 PF14622 Ribonuclease-III-like XM56_15060 PF00717 Peptidase S24-like XM56_15060 PF10502 Signal peptidase, peptidase S26 XM56_15065 PF00009 Elongation factor Tu GTP binding domain XM56_15065 PF00679 Elongation factor G C-terminus XM56_15065 PF03144 Elongation factor Tu domain 2 XM56_15065 PF06421 GTP-binding protein LepA C-terminus XM56_15075 PF04246 XM56_15075 XM56_15080 PF03888 MucB/RseB family XM56_15080 PF17188 XM56_15080 XM56_15085 PF03872 Anti sigma-E protein RseA, N-terminal domain XM56_15085 PF03873 Anti sigma-E protein RseA, C-terminal domain XM56_15090 PF04542 Sigma-70 region 2 XM56_15090 PF08281 Sigma-70, region 4 XM56_15095 PF00890 FAD binding domain XM56_15095 PF02910 Fumarate reductase flavoprotein C-term XM56_15100 PF05175 Methyltransferase small domain XM56_15105 PF00270 DEAD/DEAH box helicase XM56_15105 PF00271 Helicase conserved C-terminal domain XM56_15110 PF01548 XM56_15110 XM56_15110 PF02371 XM56_15110 XM56_15115 PF01548 XM56_15115 XM56_15115 PF02371 XM56_15115 XM56_15120 PF00023 Ankyrin repeat XM56_15120 PF12796 Ankyrin repeats (3 copies) XM56_15135 PF01228 Glycine radical XM56_15140 PF03167 Uracil DNA glycosylase superfamily XM56_15145 PF01025 GrpE XM56_15150 PF01513 ATP-NAD kinase XM56_15155 PF02463 RecF/RecN/SMC N terminal domain XM56_15160 PF04355 SmpA / OmlA family XM56_15165 PF03658 RnfH family Ubiquitin XM56_15170 PF03364 Polyketide cyclase / dehydrase and lipid transport XM56_15175 PF01668 SmpB protein XM56_15180 PF00589 Phage integrase family XM56_15180 PF13356 Domain of unknown function (DUF4102) XM56_15185 PF16162 XM56_15185 XM56_15200 PF00145 C-5 cytosine-specific DNA methylase XM56_15205 PF04917 XM56_15205 XM56_15210 PF06412 XM56_15210 XM56_15220 PF03389 MobA/MobL family XM56_15225 PF01695 IstB-like ATP binding protein XM56_15230 PF00665 Integrase core domain XM56_15235 PF01740 STAS domain XM56_15240 PF04794 YdjC-like protein XM56_15245 PF07883 Cupin domain XM56_15245 PF12833 Helix-turn-helix domain XM56_15250 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit XM56_15255 PF00232 Glycosyl hydrolase family 1 XM56_15260 PF02378 Phosphotransferase system, EIIC XM56_15265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit XM56_15270 PF07995 Glucose / Sorbosone dehydrogenase XM56_15275 PF01548 XM56_15275 XM56_15275 PF02371 XM56_15275 XM56_15285 PF02537 XM56_15285 XM56_15290 PF02537 XM56_15290 XM56_15295 PF02254 TrkA-N domain XM56_15295 PF07885 Ion channel XM56_15300 PF06411 HdeA/HdeB family XM56_15305 PF03824 XM56_15305 XM56_15310 PF03253 Urea transporter XM56_15315 PF01774 UreD urease accessory protein XM56_15320 PF02492 CobW/HypB/UreG, nucleotide-binding domain XM56_15325 PF01730 UreF XM56_15330 PF02814 UreE urease accessory protein, N-terminal domain XM56_15330 PF05194 UreE urease accessory protein, C-terminal domain XM56_15335 PF00449 Urease alpha-subunit, N-terminal domain XM56_15335 PF01979 Amidohydrolase family XM56_15340 PF00699 Urease beta subunit XM56_15345 PF00547 Urease, gamma subunit XM56_15350 PF00005 ABC transporter XM56_15355 PF00005 ABC transporter XM56_15360 PF00528 Binding-protein-dependent transport system inner membrane component XM56_15365 PF00528 Binding-protein-dependent transport system inner membrane component XM56_15370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_15385 PF00581 Rhodanese-like domain XM56_15395 PF12833 Helix-turn-helix domain XM56_15400 PF00313 'Cold-shock' DNA-binding domain XM56_15405 PF04899 XM56_15405 XM56_15410 PF06711 XM56_15410 XM56_15415 PF09400 Protein of unknown function (DUF2002) XM56_15420 PF07690 Major Facilitator Superfamily XM56_15425 PF12833 Helix-turn-helix domain XM56_15430 PF03403 Platelet-activating factor acetylhydrolase, isoform II XM56_15435 PF06392 XM56_15435 XM56_15445 PF05957 XM56_15445 XM56_15450 PF00155 Aminotransferase class I and II XM56_15450 PF00392 Bacterial regulatory proteins, gntR family XM56_15455 PF02627 Carboxymuconolactone decarboxylase family XM56_15460 PF00462 Glutaredoxin XM56_15465 PF07972 NrdI Flavodoxin like XM56_15470 PF00317 Ribonucleotide reductase, all-alpha domain XM56_15470 PF02867 Ribonucleotide reductase, barrel domain XM56_15470 PF08343 Ribonucleotide reductase N-terminal XM56_15475 PF00268 Ribonucleotide reductase, small chain XM56_15480 PF00005 ABC transporter XM56_15480 PF00571 CBS domain XM56_15485 PF00528 Binding-protein-dependent transport system inner membrane component XM56_15490 PF04069 Substrate binding domain of ABC-type glycine betaine transport system XM56_15500 PF00929 Exonuclease XM56_15505 PF00075 RNase H XM56_15510 PF08241 Methyltransferase domain XM56_15515 PF00753 Metallo-beta-lactamase superfamily XM56_15515 PF16123 XM56_15515 XM56_15520 PF01464 Transglycosylase SLT domain XM56_15520 PF01476 LysM domain XM56_15525 PF02371 XM56_15525 XM56_15530 PF03372 Endonuclease/Exonuclease/phosphatase family XM56_15535 PF07690 Major Facilitator Superfamily XM56_15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_15540 PF03466 LysR substrate binding domain XM56_15545 PF00248 Aldo/keto reductase family XM56_15555 PF00872 XM56_15555 XM56_15585 PF13242 HAD-hyrolase-like XM56_15590 PF00005 ABC transporter XM56_15590 PF09383 NIL domain XM56_15595 PF00528 Binding-protein-dependent transport system inner membrane component XM56_15600 PF03180 NLPA lipoprotein XM56_15605 PF16358 XM56_15605 XM56_15610 PF01980 Uncharacterised protein family UPF0066 XM56_15615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) XM56_15615 PF03129 Anticodon binding domain XM56_15615 PF04073 Aminoacyl-tRNA editing domain XM56_15620 PF04170 NlpE N-terminal domain XM56_15620 PF17185 XM56_15620 XM56_15625 PF00472 RF-1 domain XM56_15630 PF07152 YaeQ protein XM56_15635 PF06786 XM56_15635 XM56_15640 PF07073 Modulator of Rho-dependent transcription termination (ROF) XM56_15645 PF00034 Cytochrome c XM56_15650 PF01171 PP-loop family XM56_15650 PF09179 TilS substrate binding domain XM56_15650 PF11734 TilS substrate C-terminal domain XM56_15655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily XM56_15660 PF01276 Orn/Lys/Arg decarboxylase, major domain XM56_15660 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XM56_15660 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XM56_15665 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit XM56_15670 PF01336 OB-fold nucleic acid binding domain XM56_15670 PF02811 PHP domain XM56_15670 PF07733 Bacterial DNA polymerase III alpha subunit XM56_15670 PF14579 Helix-hairpin-helix motif XM56_15675 PF01351 Ribonuclease HII XM56_15680 PF02684 XM56_15680 XM56_15685 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_15685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 XM56_15690 PF07977 FabA-like domain XM56_15695 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_15695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD XM56_15700 PF03938 Outer membrane protein (OmpH-like) XM56_15705 PF01103 Surface antigen XM56_15705 PF07244 Surface antigen variable number repeat XM56_15710 PF02163 Peptidase family M50 XM56_15710 PF13180 PDZ domain XM56_15715 PF01148 Cytidylyltransferase family XM56_15720 PF01255 Putative undecaprenyl diphosphate synthase XM56_15725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase XM56_15725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal XM56_15725 PF13288 DXP reductoisomerase C-terminal domain XM56_15730 PF01765 Ribosome recycling factor XM56_15735 PF00696 Amino acid kinase family XM56_15740 PF00889 Elongation factor TS XM56_15745 PF00318 Ribosomal protein S2 XM56_15750 PF00557 Metallopeptidase family M24 XM56_15755 PF01842 ACT domain XM56_15755 PF01909 Nucleotidyltransferase domain XM56_15755 PF01966 HD domain XM56_15755 PF08335 GlnD PII-uridylyltransferase XM56_15760 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_15760 PF14602 Hexapeptide repeat of succinyl-transferase XM56_15760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal XM56_15765 PF11944 XM56_15765 XM56_15770 PF00258 Flavodoxin XM56_15775 PF00849 RNA pseudouridylate synthase XM56_15780 PF04287 tRNA pseudouridine synthase C XM56_15785 PF07348 Syd protein (SUKH-2) XM56_15790 PF14489 QueF-like protein XM56_15790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term XM56_15795 PF03641 Possible lysine decarboxylase XM56_15795 PF11892 Domain of unknown function (DUF3412) XM56_15795 PF14793 Domain of unknown function (DUF4478) XM56_15800 PF01367 5'-3' exonuclease, C-terminal SAM fold XM56_15800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XM56_15805 PF01548 XM56_15805 XM56_15805 PF02371 XM56_15805 XM56_15810 PF01728 FtsJ-like methyltransferase XM56_15815 PF04241 XM56_15815 XM56_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_15820 PF03466 LysR substrate binding domain XM56_15825 PF06004 Bacterial protein of unknown function (DUF903) XM56_15830 PF00266 Aminotransferase class-V XM56_15835 PF02657 Fe-S metabolism associated domain XM56_15840 PF00899 ThiF family XM56_15845 PF03562 MltA specific insert domain XM56_15845 PF06725 3D domain XM56_15855 PF01520 N-acetylmuramoyl-L-alanine amidase XM56_15855 PF11741 AMIN domain XM56_15860 PF00583 Acetyltransferase (GNAT) family XM56_15860 PF00696 Amino acid kinase family XM56_15865 PF01548 XM56_15865 XM56_15865 PF02371 XM56_15865 XM56_15870 PF13538 UvrD-like helicase C-terminal domain XM56_15870 PF13604 AAA domain XM56_15875 PF00580 UvrD/REP helicase N-terminal domain XM56_15875 PF12705 PD-(D/E)XK nuclease superfamily XM56_15875 PF13361 UvrD-like helicase C-terminal domain XM56_15880 PF00675 Insulinase (Peptidase family M16) XM56_15880 PF05193 Peptidase M16 inactive domain XM56_15880 PF16187 XM56_15880 XM56_15885 PF04257 Exodeoxyribonuclease V, gamma subunit XM56_15890 PF12528 XM56_15890 XM56_15895 PF10713 XM56_15895 XM56_15900 PF07963 Prokaryotic N-terminal methylation motif XM56_15905 PF07963 Prokaryotic N-terminal methylation motif XM56_15910 PF00303 Thymidylate synthase XM56_15915 PF01790 XM56_15915 XM56_15920 PF00391 PEP-utilising enzyme, mobile domain XM56_15920 PF01590 GAF domain XM56_15920 PF02896 PEP-utilising enzyme, TIM barrel domain XM56_15920 PF05524 PEP-utilising enzyme, N-terminal XM56_15925 PF00293 NUDIX domain XM56_15935 PF02976 DNA mismatch repair enzyme MutH XM56_15940 PF03741 XM56_15940 XM56_15945 PF00248 Aldo/keto reductase family XM56_15950 PF07690 Major Facilitator Superfamily XM56_15955 PF00501 AMP-binding enzyme XM56_15955 PF01553 Acyltransferase XM56_15955 PF13193 AMP-binding enzyme C-terminal domain XM56_15960 PF01548 XM56_15960 XM56_15960 PF02371 XM56_15960 XM56_15965 PF00384 Molybdopterin oxidoreductase XM56_15965 PF01568 Molydopterin dinucleotide binding domain XM56_15970 PF00356 Bacterial regulatory proteins, lacI family XM56_15970 PF13377 Periplasmic binding protein-like domain XM56_15975 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain XM56_15975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain XM56_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_15980 PF03466 LysR substrate binding domain XM56_15985 PF07690 Major Facilitator Superfamily XM56_15990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_15990 PF03466 LysR substrate binding domain XM56_15995 PF00753 Metallo-beta-lactamase superfamily XM56_16015 PF00486 Transcriptional regulatory protein, C terminal XM56_16020 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) XM56_16025 PF01478 Type IV leader peptidase family XM56_16025 PF06750 XM56_16025 XM56_16040 PF03934 Type II secretion system (T2SS), protein K XM56_16045 PF11612 Type II secretion system (T2SS), protein J XM56_16050 PF02501 Type II secretion system (T2SS), protein I XM56_16055 PF07963 Prokaryotic N-terminal methylation motif XM56_16055 PF08334 Type II secretion system (T2SS), protein G XM56_16060 PF00482 Type II secretion system (T2SS), protein F XM56_16065 PF00437 Type II/IV secretion system protein XM56_16070 PF00263 XM56_16070 XM56_16070 PF03958 Bacterial type II/III secretion system short domain XM56_16075 PF11356 Type IV pilus biogenesis XM56_16085 PF00484 Carbonic anhydrase XM56_16090 PF01638 HxlR-like helix-turn-helix XM56_16095 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_16100 PF13591 MerR HTH family regulatory protein XM56_16105 PF00226 DnaJ domain XM56_16105 PF01556 DnaJ C terminal domain XM56_16110 PF01548 XM56_16110 XM56_16110 PF02371 XM56_16110 XM56_16115 PF00356 Bacterial regulatory proteins, lacI family XM56_16115 PF13377 Periplasmic binding protein-like domain XM56_16120 PF07690 Major Facilitator Superfamily XM56_16125 PF01055 Glycosyl hydrolases family 31 XM56_16125 PF13802 Galactose mutarotase-like XM56_16125 PF17137 XM56_16125 XM56_16130 PF09391 Protein of unknown function (DUF2000) XM56_16135 PF01037 AsnC family XM56_16135 PF13412 Winged helix-turn-helix DNA-binding XM56_16145 PF00990 GGDEF domain XM56_16145 PF08448 PAS fold XM56_16150 PF13474 SnoaL-like domain XM56_16160 PF05930 Prophage CP4-57 regulatory protein (AlpA) XM56_16165 PF00872 XM56_16165 XM56_16170 PF15731 XM56_16170 XM56_16175 PF15723 XM56_16175 XM56_16180 PF01381 Helix-turn-helix XM56_16185 PF05016 Plasmid stabilisation system protein XM56_16190 PF13560 Helix-turn-helix domain XM56_16205 PF00239 Resolvase, N terminal domain XM56_16220 PF00665 Integrase core domain XM56_16225 PF01695 IstB-like ATP binding protein XM56_16240 PF00152 tRNA synthetases class II (D, K and N) XM56_16240 PF01336 OB-fold nucleic acid binding domain XM56_16245 PF00472 RF-1 domain XM56_16245 PF03462 PCRF domain XM56_16250 PF01368 DHH family XM56_16250 PF02272 DHHA1 domain XM56_16255 PF10411 Disulfide bond isomerase protein N-terminus XM56_16255 PF13098 Thioredoxin-like domain XM56_16260 PF00589 Phage integrase family XM56_16260 PF02899 Phage integrase, N-terminal SAM-like domain XM56_16265 PF00258 Flavodoxin XM56_16270 PF06123 XM56_16270 XM56_16275 PF00512 His Kinase A (phospho-acceptor) domain XM56_16275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_16275 PF14827 Sensory domain of two-component sensor kinase XM56_16280 PF00072 Response regulator receiver domain XM56_16280 PF00486 Transcriptional regulatory protein, C terminal XM56_16285 PF07254 XM56_16285 XM56_16290 PF03937 Flavinator of succinate dehydrogenase XM56_16295 PF01571 Aminomethyltransferase folate-binding domain XM56_16300 PF01548 XM56_16300 XM56_16300 PF02371 XM56_16300 XM56_16305 PF03006 XM56_16305 XM56_16310 PF13023 HD domain XM56_16315 PF13561 Enoyl-(Acyl carrier protein) reductase XM56_16320 PF13924 XM56_16320 XM56_16325 PF02347 Glycine cleavage system P-protein XM56_16330 PF01597 Glycine cleavage H-protein XM56_16335 PF01571 Aminomethyltransferase folate-binding domain XM56_16335 PF08669 Glycine cleavage T-protein C-terminal barrel domain XM56_16340 PF01494 FAD binding domain XM56_16345 PF01494 FAD binding domain XM56_16350 PF00557 Metallopeptidase family M24 XM56_16350 PF05195 Aminopeptidase P, N-terminal domain XM56_16355 PF03695 Uncharacterised protein family (UPF0149) XM56_16360 PF05164 Cell division protein ZapA XM56_16365 PF01812 5-formyltetrahydrofolate cyclo-ligase family XM56_16370 PF00113 Enolase, C-terminal TIM barrel domain XM56_16370 PF03952 Enolase, N-terminal domain XM56_16375 PF00117 Glutamine amidotransferase class-I XM56_16375 PF06418 CTP synthase N-terminus XM56_16380 PF03819 MazG nucleotide pyrophosphohydrolase domain XM56_16385 PF02824 TGS domain XM56_16385 PF04607 Region found in RelA / SpoT proteins XM56_16385 PF13291 ACT domain XM56_16385 PF13328 HD domain XM56_16390 PF01938 TRAM domain XM56_16390 PF05958 tRNA (Uracil-5-)-methyltransferase XM56_16395 PF00072 Response regulator receiver domain XM56_16395 PF00512 His Kinase A (phospho-acceptor) domain XM56_16395 PF01627 Hpt domain XM56_16395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_16395 PF09984 XM56_16395 XM56_16400 PF00595 PDZ domain (Also known as DHR or GLGF) XM56_16400 PF13180 PDZ domain XM56_16400 PF13365 Trypsin-like peptidase domain XM56_16405 PF01966 HD domain XM56_16405 PF13286 Phosphohydrolase-associated domain XM56_16410 PF01048 Phosphorylase superfamily XM56_16415 PF01497 Periplasmic binding protein XM56_16420 PF03458 XM56_16420 XM56_16425 PF01521 Iron-sulphur cluster biosynthesis XM56_16430 PF00654 Voltage gated chloride channel XM56_16435 PF00202 Aminotransferase class-III XM56_16440 PF07690 Major Facilitator Superfamily XM56_16445 PF01032 FecCD transport family XM56_16450 PF01497 Periplasmic binding protein XM56_16455 PF00005 ABC transporter XM56_16460 PF00905 Penicillin binding protein transpeptidase domain XM56_16460 PF00912 Transglycosylase XM56_16460 PF14812 XM56_16460 XM56_16460 PF14814 Bifunctional transglycosylase second domain XM56_16465 PF00270 DEAD/DEAH box helicase XM56_16465 PF00271 Helicase conserved C-terminal domain XM56_16465 PF04408 Helicase associated domain (HA2) XM56_16465 PF08482 XM56_16465 XM56_16470 PF13563 2'-5' RNA ligase superfamily XM56_16475 PF03749 Sugar fermentation stimulation protein XM56_16480 PF01258 Prokaryotic dksA/traR C4-type zinc finger XM56_16485 PF00749 tRNA synthetases class I (E and Q), catalytic domain XM56_16490 PF01743 Poly A polymerase head domain XM56_16490 PF12626 Polymerase A arginine-rich C-terminus XM56_16490 PF12627 Probable RNA and SrmB- binding site of polymerase A XM56_16495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) XM56_16500 PF02548 Ketopantoate hydroxymethyltransferase XM56_16505 PF02569 Pantoate-beta-alanine ligase XM56_16510 PF02261 Aspartate decarboxylase XM56_16515 PF01522 Polysaccharide deacetylase XM56_16520 PF01061 XM56_16520 XM56_16525 PF00005 ABC transporter XM56_16530 PF00484 Carbonic anhydrase XM56_16535 PF00156 Phosphoribosyl transferase domain XM56_16540 PF00394 Multicopper oxidase XM56_16540 PF07731 Multicopper oxidase XM56_16540 PF07732 Multicopper oxidase XM56_16540 PF10518 TAT (twin-arginine translocation) pathway signal sequence XM56_16545 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) XM56_16550 PF01564 Spermine/spermidine synthase XM56_16550 PF17284 XM56_16550 XM56_16555 PF02675 S-adenosylmethionine decarboxylase XM56_16565 PF00892 EamA-like transporter family XM56_16570 PF06062 XM56_16570 XM56_16575 PF00330 Aconitase family (aconitate hydratase) XM56_16575 PF06434 Aconitate hydratase 2 N-terminus XM56_16575 PF11791 Aconitate B N-terminal domain XM56_16580 PF00593 TonB dependent receptor XM56_16580 PF07715 TonB-dependent Receptor Plug Domain XM56_16585 PF12833 Helix-turn-helix domain XM56_16590 PF03496 ADP-ribosyltransferase exoenzyme XM56_16595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XM56_16595 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_16600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) XM56_16600 PF00364 Biotin-requiring enzyme XM56_16600 PF02817 e3 binding domain XM56_16605 PF00456 Transketolase, thiamine diphosphate binding domain XM56_16610 PF00392 Bacterial regulatory proteins, gntR family XM56_16610 PF07729 FCD domain XM56_16615 PF00324 Amino acid permease XM56_16620 PF17113 XM56_16620 XM56_16625 PF01510 N-acetylmuramoyl-L-alanine amidase XM56_16630 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain XM56_16630 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain XM56_16635 PF07963 Prokaryotic N-terminal methylation motif XM56_16640 PF00437 Type II/IV secretion system protein XM56_16640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain XM56_16645 PF00482 Type II secretion system (T2SS), protein F XM56_16650 PF00478 IMP dehydrogenase / GMP reductase domain XM56_16655 PF01121 Dephospho-CoA kinase XM56_16660 PF07072 Protein of unknown function (DUF1342) XM56_16665 PF03884 Domain of unknown function (DUF329) XM56_16670 PF00293 NUDIX domain XM56_16675 PF01043 SecA preprotein cross-linking domain XM56_16675 PF02810 SEC-C motif XM56_16675 PF07516 SecA Wing and Scaffold domain XM56_16675 PF07517 SecA DEAD-like domain XM56_16680 PF06558 XM56_16680 XM56_16685 PF05258 XM56_16685 XM56_16690 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase XM56_16695 PF00091 Tubulin/FtsZ family, GTPase domain XM56_16695 PF12327 FtsZ family, C-terminal domain XM56_16700 PF02491 SHS2 domain inserted in FTSA XM56_16700 PF14450 Cell division protein FtsA XM56_16705 PF03799 Cell division protein FtsQ XM56_16705 PF08478 POTRA domain, FtsQ-type XM56_16710 PF01820 D-ala D-ala ligase N-terminus XM56_16710 PF07478 D-ala D-ala ligase C-terminus XM56_16715 PF01225 Mur ligase family, catalytic domain XM56_16715 PF02875 Mur ligase family, glutamate ligase domain XM56_16715 PF08245 Mur ligase middle domain XM56_16720 PF03033 Glycosyltransferase family 28 N-terminal domain XM56_16720 PF04101 Glycosyltransferase family 28 C-terminal domain XM56_16725 PF01098 XM56_16725 XM56_16730 PF02875 Mur ligase family, glutamate ligase domain XM56_16730 PF08245 Mur ligase middle domain XM56_16735 PF00953 Glycosyl transferase family 4 XM56_16735 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 XM56_16740 PF01225 Mur ligase family, catalytic domain XM56_16740 PF02875 Mur ligase family, glutamate ligase domain XM56_16740 PF08245 Mur ligase middle domain XM56_16745 PF01225 Mur ligase family, catalytic domain XM56_16745 PF02875 Mur ligase family, glutamate ligase domain XM56_16745 PF08245 Mur ligase middle domain XM56_16750 PF00905 Penicillin binding protein transpeptidase domain XM56_16750 PF03717 Penicillin-binding Protein dimerisation domain XM56_16755 PF04999 XM56_16755 XM56_16760 PF01795 MraW methylase family XM56_16765 PF02381 MraZ protein XM56_16775 PF06610 XM56_16775 XM56_16780 PF00356 Bacterial regulatory proteins, lacI family XM56_16780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family XM56_16785 PF01842 ACT domain XM56_16785 PF10369 Small subunit of acetolactate synthase XM56_16790 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_16790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_16790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_16795 PF00501 AMP-binding enzyme XM56_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_16800 PF03466 LysR substrate binding domain XM56_16805 PF00682 HMGL-like XM56_16805 PF08502 LeuA allosteric (dimerisation) domain XM56_16810 PF00180 Isocitrate/isopropylmalate dehydrogenase XM56_16815 PF00330 Aconitase family (aconitate hydratase) XM56_16820 PF00694 Aconitase C-terminal domain XM56_16830 PF01212 Beta-eliminating lyase XM56_16835 PF03222 Tryptophan/tyrosine permease family XM56_16840 PF01548 XM56_16840 XM56_16840 PF02371 XM56_16840 XM56_16845 PF07690 Major Facilitator Superfamily XM56_16850 PF01228 Glycine radical XM56_16850 PF02901 Pyruvate formate lyase XM56_16855 PF04055 Radical SAM superfamily XM56_16855 PF13353 4Fe-4S single cluster domain XM56_16860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_16860 PF12793 XM56_16860 XM56_16870 PF13988 XM56_16870 XM56_16875 PF01547 Bacterial extracellular solute-binding protein XM56_16880 PF00528 Binding-protein-dependent transport system inner membrane component XM56_16885 PF00005 ABC transporter XM56_16890 PF09335 XM56_16890 XM56_16895 PF00136 DNA polymerase family B XM56_16895 PF03104 DNA polymerase family B, exonuclease domain XM56_16900 PF00176 SNF2 family N-terminal domain XM56_16900 PF00271 Helicase conserved C-terminal domain XM56_16900 PF12137 RNA polymerase recycling family C-terminal XM56_16905 PF02369 Bacterial Ig-like domain (group 1) XM56_16905 PF09134 Invasin, domain 3 XM56_16905 PF11924 Protein of unknown function (DUF3442) XM56_16910 PF00849 RNA pseudouridylate synthase XM56_16915 PF00226 DnaJ domain XM56_16915 PF05099 Tellurite resistance protein TerB XM56_16920 PF03968 OstA-like protein XM56_16920 PF04453 Organic solvent tolerance protein XM56_16925 PF00639 PPIC-type PPIASE domain XM56_16925 PF09312 SurA N-terminal domain XM56_16930 PF04166 Pyridoxal phosphate biosynthetic protein PdxA XM56_16935 PF00398 Ribosomal RNA adenine dimethylase XM56_16940 PF04379 Protein of unknown function (DUF525) XM56_16945 PF00149 Calcineurin-like phosphoesterase XM56_16950 PF00186 Dihydrofolate reductase XM56_16955 PF12821 XM56_16955 XM56_16960 PF06738 XM56_16960 XM56_16965 PF01810 XM56_16965 XM56_16970 PF02142 MGS-like domain XM56_16970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain XM56_16970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XM56_16975 PF00117 Glutamine amidotransferase class-I XM56_16975 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain XM56_16980 PF01113 Dihydrodipicolinate reductase, N-terminus XM56_16980 PF05173 Dihydrodipicolinate reductase, C-terminus XM56_16985 PF02401 LytB protein XM56_16990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XM56_16995 PF01252 XM56_16995 XM56_17000 PF00133 tRNA synthetases class I (I, L, M and V) XM56_17000 PF06827 Zinc finger found in FPG and IleRS XM56_17000 PF08264 Anticodon-binding domain of tRNA XM56_17005 PF01687 Riboflavin kinase XM56_17005 PF06574 FAD synthetase XM56_17015 PF01649 Ribosomal protein S20 XM56_17020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_17020 PF03466 LysR substrate binding domain XM56_17025 PF06965 Na+/H+ antiporter 1 XM56_17030 PF00226 DnaJ domain XM56_17030 PF00684 DnaJ central domain XM56_17030 PF01556 DnaJ C terminal domain XM56_17035 PF00012 Hsp70 protein XM56_17040 PF01184 XM56_17040 XM56_17045 PF03995 Peptidase inhibitor family I36 XM56_17050 PF07690 Major Facilitator Superfamily XM56_17055 PF00994 Probable molybdopterin binding domain XM56_17060 PF00923 Transaldolase XM56_17065 PF03883 XM56_17065 XM56_17070 PF01548 XM56_17070 XM56_17070 PF02371 XM56_17070 XM56_17075 PF00291 Pyridoxal-phosphate dependent enzyme XM56_17075 PF14821 Threonine synthase N terminus XM56_17080 PF00288 GHMP kinases N terminal domain XM56_17080 PF08544 GHMP kinases C terminal XM56_17085 PF00696 Amino acid kinase family XM56_17085 PF00742 Homoserine dehydrogenase XM56_17085 PF01842 ACT domain XM56_17085 PF03447 Homoserine dehydrogenase, NAD binding domain XM56_17085 PF13840 ACT domain XM56_17095 PF00072 Response regulator receiver domain XM56_17095 PF00486 Transcriptional regulatory protein, C terminal XM56_17100 PF05981 XM56_17100 XM56_17105 PF06445 GyrI-like small molecule binding domain XM56_17105 PF12833 Helix-turn-helix domain XM56_17110 PF00300 Histidine phosphatase superfamily (branch 1) XM56_17115 PF01931 Protein of unknown function DUF84 XM56_17120 PF01371 Trp repressor protein XM56_17125 PF01464 Transglycosylase SLT domain XM56_17125 PF14718 Soluble lytic murein transglycosylase L domain XM56_17130 PF00122 E1-E2 ATPase XM56_17130 PF00689 Cation transporting ATPase, C-terminus XM56_17130 PF00690 Cation transporter/ATPase, N-terminus XM56_17130 PF00702 haloacid dehalogenase-like hydrolase XM56_17135 PF13689 XM56_17135 XM56_17140 PF00990 GGDEF domain XM56_17140 PF17152 XM56_17140 XM56_17145 PF00691 OmpA family XM56_17150 PF00005 ABC transporter XM56_17150 PF12848 ABC transporter XM56_17155 PF02661 Fic/DOC family XM56_17155 PF13776 XM56_17155 XM56_17160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_17160 PF03466 LysR substrate binding domain XM56_17165 PF08240 Alcohol dehydrogenase GroES-like domain XM56_17165 PF13602 Zinc-binding dehydrogenase XM56_17170 PF01381 Helix-turn-helix XM56_17170 PF13521 AAA domain XM56_17175 PF13481 AAA domain XM56_17175 PF13541 Subunit ChlI of Mg-chelatase XM56_17180 PF12710 haloacid dehalogenase-like hydrolase XM56_17185 PF10144 XM56_17185 XM56_17190 PF01048 Phosphorylase superfamily XM56_17195 PF01676 Metalloenzyme superfamily XM56_17200 PF00591 Glycosyl transferase family, a/b domain XM56_17200 PF02885 Glycosyl transferase family, helical bundle domain XM56_17200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain XM56_17205 PF01791 DeoC/LacD family aldolase XM56_17210 PF01773 Na+ dependent nucleoside transporter N-terminus XM56_17210 PF07662 Na+ dependent nucleoside transporter C-terminus XM56_17210 PF07670 Nucleoside recognition XM56_17215 PF01026 TatD related DNase XM56_17220 PF01734 Patatin-like phospholipase XM56_17225 PF04972 BON domain XM56_17230 PF00009 Elongation factor Tu GTP binding domain XM56_17230 PF03144 Elongation factor Tu domain 2 XM56_17230 PF16658 XM56_17230 XM56_17235 PF00583 Acetyltransferase (GNAT) family XM56_17240 PF03603 DNA polymerase III psi subunit XM56_17245 PF05175 Methyltransferase small domain XM56_17245 PF08468 Methyltransferase small domain N-terminal XM56_17250 PF00248 Aldo/keto reductase family XM56_17255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_17255 PF03466 LysR substrate binding domain XM56_17265 PF07256 XM56_17265 XM56_17270 PF00990 GGDEF domain XM56_17275 PF00593 TonB dependent receptor XM56_17275 PF07715 TonB-dependent Receptor Plug Domain XM56_17280 PF01497 Periplasmic binding protein XM56_17285 PF00294 pfkB family carbohydrate kinase XM56_17290 PF02264 LamB porin XM56_17290 PF11471 XM56_17290 XM56_17295 PF00367 phosphotransferase system, EIIB XM56_17295 PF02378 Phosphotransferase system, EIIC XM56_17300 PF00251 Glycosyl hydrolases family 32 N-terminal domain XM56_17300 PF08244 Glycosyl hydrolases family 32 C terminal XM56_17305 PF00356 Bacterial regulatory proteins, lacI family XM56_17305 PF13377 Periplasmic binding protein-like domain XM56_17310 PF00158 Sigma-54 interaction domain XM56_17310 PF00989 PAS fold XM56_17310 PF02954 Bacterial regulatory protein, Fis family XM56_17315 PF01095 Pectinesterase XM56_17320 PF10014 2OG-Fe dioxygenase XM56_17325 PF07690 Major Facilitator Superfamily XM56_17340 PF02543 Carbamoyltransferase XM56_17340 PF16861 XM56_17340 XM56_17345 PF00534 Glycosyl transferases group 1 XM56_17350 PF00381 PTS HPr component phosphorylation site XM56_17350 PF00391 PEP-utilising enzyme, mobile domain XM56_17350 PF03610 PTS system fructose IIA component XM56_17350 PF05524 PEP-utilising enzyme, N-terminal XM56_17355 PF02734 DAK2 domain XM56_17360 PF02733 Dak1 domain XM56_17365 PF00465 Iron-containing alcohol dehydrogenase XM56_17370 PF00873 AcrB/AcrD/AcrF family XM56_17375 PF16576 XM56_17375 XM56_17380 PF02274 Amidinotransferase XM56_17385 PF13520 Amino acid permease XM56_17390 PF04932 XM56_17390 XM56_17395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XM56_17400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XM56_17400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XM56_17405 PF04198 Putative sugar-binding domain XM56_17410 PF00005 ABC transporter XM56_17415 PF02653 XM56_17415 XM56_17420 PF02653 XM56_17420 XM56_17425 PF13407 Periplasmic binding protein domain XM56_17430 PF01791 DeoC/LacD family aldolase XM56_17435 PF03992 Antibiotic biosynthesis monooxygenase XM56_17445 PF10696 XM56_17445 XM56_17450 PF00872 XM56_17450 XM56_17460 PF13391 XM56_17460 XM56_17465 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin XM56_17475 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin XM56_17480 PF00196 Bacterial regulatory proteins, luxR family XM56_17480 PF08448 PAS fold XM56_17485 PF00583 Acetyltransferase (GNAT) family XM56_17495 PF00665 Integrase core domain XM56_17500 PF01695 IstB-like ATP binding protein XM56_17505 PF00665 Integrase core domain XM56_17515 PF13518 Helix-turn-helix domain XM56_17520 PF01381 Helix-turn-helix XM56_17525 PF05016 Plasmid stabilisation system protein XM56_17530 PF01402 Ribbon-helix-helix protein, copG family XM56_17545 PF03739 XM56_17545 XM56_17550 PF03739 XM56_17550 XM56_17555 PF00883 Cytosol aminopeptidase family, catalytic domain XM56_17555 PF02789 Cytosol aminopeptidase family, N-terminal domain XM56_17560 PF04364 DNA polymerase III chi subunit, HolC XM56_17565 PF00133 tRNA synthetases class I (I, L, M and V) XM56_17565 PF08264 Anticodon-binding domain of tRNA XM56_17565 PF10458 Valyl tRNA synthetase tRNA binding arm XM56_17570 PF00583 Acetyltransferase (GNAT) family XM56_17575 PF01548 XM56_17575 XM56_17575 PF02371 XM56_17575 XM56_17580 PF06877 Regulator of ribonuclease activity B XM56_17585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain XM56_17585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain XM56_17590 PF04074 Domain of unknown function (DUF386) XM56_17595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle XM56_17600 PF00528 Binding-protein-dependent transport system inner membrane component XM56_17605 PF00528 Binding-protein-dependent transport system inner membrane component XM56_17605 PF12911 XM56_17605 XM56_17610 PF00005 ABC transporter XM56_17615 PF00005 ABC transporter XM56_17620 PF03466 LysR substrate binding domain XM56_17625 PF03477 ATP cone domain XM56_17625 PF13597 Anaerobic ribonucleoside-triphosphate reductase XM56_17630 PF13353 4Fe-4S single cluster domain XM56_17635 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB XM56_17635 PF08479 POTRA domain, ShlB-type XM56_17640 PF15984 XM56_17640 XM56_17645 PF00392 Bacterial regulatory proteins, gntR family XM56_17645 PF07702 UTRA domain XM56_17650 PF06754 XM56_17650 XM56_17655 PF05845 Bacterial phosphonate metabolism protein (PhnH) XM56_17660 PF05861 XM56_17660 XM56_17665 PF06007 XM56_17665 XM56_17670 PF00005 ABC transporter XM56_17675 PF00005 ABC transporter XM56_17680 PF07969 Amidohydrolase family XM56_17685 PF13238 AAA domain XM56_17690 PF12706 Beta-lactamase superfamily domain XM56_17700 PF05016 Plasmid stabilisation system protein XM56_17705 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XM56_17715 PF05426 Alginate lyase XM56_17720 PF00005 ABC transporter XM56_17720 PF08402 TOBE domain XM56_17725 PF00528 Binding-protein-dependent transport system inner membrane component XM56_17730 PF00528 Binding-protein-dependent transport system inner membrane component XM56_17735 PF01547 Bacterial extracellular solute-binding protein XM56_17740 PF05426 Alginate lyase XM56_17745 PF05426 Alginate lyase XM56_17745 PF07940 Heparinase II/III-like protein XM56_17750 PF01276 Orn/Lys/Arg decarboxylase, major domain XM56_17750 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain XM56_17750 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain XM56_17755 PF13520 Amino acid permease XM56_17760 PF01541 GIY-YIG catalytic domain XM56_17765 PF00583 Acetyltransferase (GNAT) family XM56_17770 PF02036 SCP-2 sterol transfer family XM56_17775 PF01136 XM56_17775 XM56_17780 PF01136 XM56_17780 XM56_17785 PF03313 XM56_17785 XM56_17795 PF02321 Outer membrane efflux protein XM56_17795 PF13533 Biotin-lipoyl like XM56_17800 PF00296 Luciferase-like monooxygenase XM56_17810 PF00270 DEAD/DEAH box helicase XM56_17810 PF00271 Helicase conserved C-terminal domain XM56_17810 PF03880 DbpA RNA binding domain XM56_17810 PF12343 XM56_17810 XM56_17815 PF07719 Tetratricopeptide repeat XM56_17815 PF13181 Tetratricopeptide repeat XM56_17820 PF00013 KH domain XM56_17820 PF00575 S1 RNA binding domain XM56_17820 PF01138 3' exoribonuclease family, domain 1 XM56_17820 PF03725 3' exoribonuclease family, domain 2 XM56_17820 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain XM56_17825 PF00312 Ribosomal protein S15 XM56_17830 PF01509 TruB family pseudouridylate synthase (N terminal domain) XM56_17830 PF09157 Pseudouridine synthase II TruB, C-terminal XM56_17830 PF16198 XM56_17830 XM56_17835 PF02033 Ribosome-binding factor A XM56_17840 PF00009 Elongation factor Tu GTP binding domain XM56_17840 PF03144 Elongation factor Tu domain 2 XM56_17840 PF04760 Translation initiation factor IF-2, N-terminal region XM56_17840 PF08364 XM56_17840 XM56_17840 PF11987 Translation-initiation factor 2 XM56_17845 PF08529 NusA N-terminal domain XM56_17845 PF13184 NusA-like KH domain XM56_17845 PF14520 Helix-hairpin-helix domain XM56_17850 PF02576 Uncharacterised BCR, YhbC family COG0779 XM56_17850 PF17384 XM56_17850 XM56_17865 PF03840 Preprotein translocase SecG subunit XM56_17870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain XM56_17870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I XM56_17870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II XM56_17870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III XM56_17875 PF00809 Pterin binding enzyme XM56_17880 PF00004 ATPase family associated with various cellular activities (AAA) XM56_17880 PF01434 Peptidase family M41 XM56_17880 PF06480 FtsH Extracellular XM56_17885 PF01728 FtsJ-like methyltransferase XM56_17890 PF01985 CRS1 / YhbY (CRM) domain XM56_17895 PF01272 Transcription elongation factor, GreA/GreB, C-term XM56_17895 PF03449 Transcription elongation factor, N-terminal XM56_17900 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family XM56_17905 PF00072 Response regulator receiver domain XM56_17905 PF00486 Transcriptional regulatory protein, C terminal XM56_17910 PF00512 His Kinase A (phospho-acceptor) domain XM56_17910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_17915 PF01018 GTP1/OBG XM56_17915 PF01926 50S ribosome-binding GTPase XM56_17920 PF00892 EamA-like transporter family XM56_17925 PF01016 Ribosomal L27 protein XM56_17930 PF00829 Ribosomal prokaryotic L21 protein XM56_17935 PF00348 Polyprenyl synthetase XM56_17940 PF02316 Mu DNA-binding domain XM56_17945 PF13693 Winged helix-turn-helix DNA-binding XM56_17950 PF00056 lactate/malate dehydrogenase, NAD binding domain XM56_17950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain XM56_17955 PF01316 Arginine repressor, DNA binding domain XM56_17955 PF02863 Arginine repressor, C-terminal domain XM56_17960 PF07338 Protein of unknown function (DUF1471) XM56_17965 PF01225 Mur ligase family, catalytic domain XM56_17965 PF02875 Mur ligase family, glutamate ligase domain XM56_17965 PF08245 Mur ligase middle domain XM56_17970 PF00316 Fructose-1-6-bisphosphatase XM56_17975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_17975 PF02203 Tar ligand binding domain homologue XM56_17980 PF00719 Inorganic pyrophosphatase XM56_17985 PF06094 AIG2-like family XM56_17990 PF04357 XM56_17990 XM56_17995 PF01103 Surface antigen XM56_17995 PF07244 Surface antigen variable number repeat XM56_17995 PF17243 XM56_17995 XM56_18000 PF01625 Peptide methionine sulfoxide reductase XM56_18005 PF00571 CBS domain XM56_18005 PF01595 XM56_18005 XM56_18005 PF03471 Transporter associated domain XM56_18010 PF06526 Protein of unknown function (DUF1107) XM56_18015 PF09695 XM56_18015 XM56_18020 PF00459 Inositol monophosphatase family XM56_18025 PF00149 Calcineurin-like phosphoesterase XM56_18025 PF02872 5'-nucleotidase, C-terminal domain XM56_18030 PF01814 Hemerythrin HHE cation binding domain XM56_18030 PF04405 XM56_18030 XM56_18035 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase XM56_18035 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase XM56_18040 PF04225 Opacity-associated protein A LysM-like domain XM56_18040 PF08525 XM56_18040 XM56_18045 PF12582 XM56_18045 XM56_18050 PF01281 Ribosomal protein L9, N-terminal domain XM56_18050 PF03948 Ribosomal protein L9, C-terminal domain XM56_18055 PF01084 Ribosomal protein S18 XM56_18060 PF00436 Single-strand binding protein family XM56_18065 PF01250 Ribosomal protein S6 XM56_18070 PF07338 Protein of unknown function (DUF1471) XM56_18075 PF00326 Prolyl oligopeptidase family XM56_18080 PF07338 Protein of unknown function (DUF1471) XM56_18085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain XM56_18085 PF02770 Acyl-CoA dehydrogenase, middle domain XM56_18090 PF00588 SpoU rRNA Methylase family XM56_18090 PF08032 RNA 2'-O ribose methyltransferase substrate binding XM56_18095 PF00575 S1 RNA binding domain XM56_18095 PF00773 RNB domain XM56_18095 PF08206 Ribonuclease B OB domain XM56_18095 PF08461 Ribonuclease R winged-helix domain XM56_18100 PF02082 Transcriptional regulator XM56_18105 PF00709 Adenylosuccinate synthetase XM56_18110 PF09838 XM56_18110 XM56_18115 PF01145 SPFH domain / Band 7 family XM56_18120 PF01145 SPFH domain / Band 7 family XM56_18120 PF12221 XM56_18120 XM56_18125 PF01926 50S ribosome-binding GTPase XM56_18125 PF13167 XM56_18125 XM56_18125 PF16360 XM56_18125 XM56_18130 PF17209 XM56_18130 XM56_18135 PF01715 IPP transferase XM56_18140 PF01119 DNA mismatch repair protein, C-terminal domain XM56_18140 PF08676 MutL C terminal dimerisation domain XM56_18140 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_18145 PF01476 LysM domain XM56_18145 PF01520 N-acetylmuramoyl-L-alanine amidase XM56_18145 PF11741 AMIN domain XM56_18150 PF02367 Uncharacterised P-loop hydrolase UPF0079 XM56_18155 PF01256 Carbohydrate kinase XM56_18155 PF03853 YjeF-related protein N-terminus XM56_18160 PF08331 XM56_18160 XM56_18160 PF13484 XM56_18160 XM56_18170 PF00929 Exonuclease XM56_18175 PF03193 Protein of unknown function, DUF258 XM56_18180 PF02666 XM56_18180 XM56_18185 PF00924 Mechanosensitive ion channel XM56_18185 PF12794 XM56_18185 XM56_18185 PF12795 XM56_18185 XM56_18190 PF00152 tRNA synthetases class II (D, K and N) XM56_18195 PF00890 FAD binding domain XM56_18195 PF02910 Fumarate reductase flavoprotein C-term XM56_18200 PF13085 2Fe-2S iron-sulfur cluster binding domain XM56_18200 PF13183 4Fe-4S dicluster domain XM56_18205 PF02300 Fumarate reductase subunit C XM56_18210 PF02313 Fumarate reductase subunit D XM56_18215 PF08212 Lipocalin-like domain XM56_18220 PF00893 Small Multidrug Resistance protein XM56_18225 PF08085 XM56_18225 XM56_18230 PF01132 Elongation factor P (EF-P) OB domain XM56_18230 PF08207 Elongation factor P (EF-P) KOW-like domain XM56_18230 PF09285 Elongation factor P, C-terminal XM56_18235 PF04055 Radical SAM superfamily XM56_18235 PF13353 4Fe-4S single cluster domain XM56_18240 PF13698 XM56_18240 XM56_18250 PF00118 TCP-1/cpn60 chaperonin family XM56_18255 PF00166 Chaperonin 10 Kd subunit XM56_18260 PF04186 XM56_18260 XM56_18265 PF00206 Lyase XM56_18265 PF10415 Fumarase C C-terminus XM56_18270 PF03605 XM56_18270 XM56_18275 PF03091 CutA1 divalent ion tolerance protein XM56_18280 PF02683 XM56_18280 XM56_18280 PF11412 Disulphide bond corrector protein DsbC XM56_18280 PF13899 Thioredoxin-like XM56_18285 PF02595 Glycerate kinase family XM56_18290 PF00440 Bacterial regulatory proteins, tetR family XM56_18300 PF01228 Glycine radical XM56_18300 PF02901 Pyruvate formate lyase XM56_18305 PF00871 Acetokinase family XM56_18310 PF01490 XM56_18310 XM56_18315 PF00291 Pyridoxal-phosphate dependent enzyme XM56_18320 PF04055 Radical SAM superfamily XM56_18325 PF06228 Haem utilisation ChuX/HutX XM56_18330 PF13460 NADH(P)-binding XM56_18335 PF10636 Hemin uptake protein hemP XM56_18340 PF00593 TonB dependent receptor XM56_18340 PF07715 TonB-dependent Receptor Plug Domain XM56_18345 PF05171 Haemin-degrading HemS XM56_18350 PF01497 Periplasmic binding protein XM56_18355 PF01032 FecCD transport family XM56_18360 PF00005 ABC transporter XM56_18365 PF00155 Aminotransferase class I and II XM56_18365 PF00392 Bacterial regulatory proteins, gntR family XM56_18370 PF00593 TonB dependent receptor XM56_18370 PF07715 TonB-dependent Receptor Plug Domain XM56_18375 PF00924 Mechanosensitive ion channel XM56_18375 PF12607 XM56_18375 XM56_18380 PF06769 Plasmid encoded toxin Txe XM56_18385 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system XM56_18390 PF00675 Insulinase (Peptidase family M16) XM56_18390 PF05193 Peptidase M16 inactive domain XM56_18395 PF00005 ABC transporter XM56_18395 PF06472 XM56_18395 XM56_18400 PF07660 Secretin and TonB N terminus short domain XM56_18400 PF07715 TonB-dependent Receptor Plug Domain XM56_18405 PF04773 FecR protein XM56_18405 PF16220 XM56_18405 XM56_18410 PF04542 Sigma-70 region 2 XM56_18410 PF08281 Sigma-70, region 4 XM56_18415 PF03544 Gram-negative bacterial TonB protein C-terminal XM56_18420 PF01206 Sulfurtransferase TusA XM56_18425 PF04143 XM56_18425 XM56_18430 PF01312 FlhB HrpN YscU SpaS Family XM56_18435 PF01311 XM56_18435 XM56_18440 PF01313 XM56_18440 XM56_18445 PF00813 XM56_18445 XM56_18450 PF01052 Surface presentation of antigens (SPOA) XM56_18450 PF06622 XM56_18450 XM56_18465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_18470 PF00771 FHIPEP family XM56_18480 PF07201 HrpJ-like domain XM56_18480 PF09059 TyeA XM56_18490 PF13327 XM56_18490 XM56_18495 PF01514 Secretory protein of YscJ/FliF family XM56_18500 PF17001 XM56_18500 XM56_18505 PF06287 XM56_18505 XM56_18510 PF09392 Type III secretion needle MxiH like XM56_18515 PF12833 Helix-turn-helix domain XM56_18530 PF09621 XM56_18530 XM56_18535 PF05802 XM56_18535 XM56_18540 PF04888 XM56_18540 XM56_18550 PF03433 EspA-like secreted protein XM56_18560 PF08988 Protein of unknown function (DUF1895) XM56_18565 PF16693 XM56_18565 XM56_18570 PF00263 XM56_18570 XM56_18570 PF03958 Bacterial type II/III secretion system short domain XM56_18580 PF00072 Response regulator receiver domain XM56_18580 PF00512 His Kinase A (phospho-acceptor) domain XM56_18580 PF01627 Hpt domain XM56_18580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_18585 PF00072 Response regulator receiver domain XM56_18585 PF00196 Bacterial regulatory proteins, luxR family XM56_18590 PF00375 Sodium:dicarboxylate symporter family XM56_18595 PF00501 AMP-binding enzyme XM56_18595 PF13193 AMP-binding enzyme C-terminal domain XM56_18595 PF16177 XM56_18595 XM56_18600 PF04341 XM56_18600 XM56_18605 PF00474 Sodium:solute symporter family XM56_18645 PF01808 AICARFT/IMPCHase bienzyme XM56_18645 PF02142 MGS-like domain XM56_18650 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain XM56_18650 PF02843 Phosphoribosylglycinamide synthetase, C domain XM56_18650 PF02844 Phosphoribosylglycinamide synthetase, N domain XM56_18655 PF07356 XM56_18655 XM56_18660 PF00216 Bacterial DNA-binding protein XM56_18665 PF04222 Protein of unknown function (DUF416) XM56_18670 PF04493 Endonuclease V XM56_18675 PF01208 Uroporphyrinogen decarboxylase (URO-D) XM56_18680 PF00293 NUDIX domain XM56_18680 PF09297 NADH pyrophosphatase zinc ribbon domain XM56_18685 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ XM56_18690 PF01964 ThiC family XM56_18690 PF13667 ThiC-associated domain XM56_18695 PF02581 Thiamine monophosphate synthase/TENI XM56_18700 PF00899 ThiF family XM56_18705 PF02597 ThiS family XM56_18710 PF05690 Thiazole biosynthesis protein ThiG XM56_18715 PF04055 Radical SAM superfamily XM56_18715 PF06968 Biotin and Thiamin Synthesis associated domain XM56_18720 PF01548 XM56_18720 XM56_18720 PF02371 XM56_18720 XM56_18725 PF00623 RNA polymerase Rpb1, domain 2 XM56_18725 PF04983 RNA polymerase Rpb1, domain 3 XM56_18725 PF04997 RNA polymerase Rpb1, domain 1 XM56_18725 PF04998 RNA polymerase Rpb1, domain 5 XM56_18725 PF05000 RNA polymerase Rpb1, domain 4 XM56_18730 PF00562 RNA polymerase Rpb2, domain 6 XM56_18730 PF04560 RNA polymerase Rpb2, domain 7 XM56_18730 PF04561 RNA polymerase Rpb2, domain 2 XM56_18730 PF04563 RNA polymerase beta subunit XM56_18730 PF04565 RNA polymerase Rpb2, domain 3 XM56_18730 PF10385 RNA polymerase beta subunit external 1 domain XM56_18735 PF00542 Ribosomal protein L7/L12 C-terminal domain XM56_18735 PF16320 XM56_18735 XM56_18740 PF00466 Ribosomal protein L10 XM56_18745 PF00687 Ribosomal protein L1p/L10e family XM56_18750 PF00298 Ribosomal protein L11, RNA binding domain XM56_18750 PF03946 Ribosomal protein L11, N-terminal domain XM56_18755 PF00467 KOW motif XM56_18755 PF02357 Transcription termination factor nusG XM56_18760 PF00584 SecE/Sec61-gamma subunits of protein translocation complex XM56_18765 PF00009 Elongation factor Tu GTP binding domain XM56_18765 PF03143 Elongation factor Tu C-terminal domain XM56_18765 PF03144 Elongation factor Tu domain 2 XM56_18790 PF13673 Acetyltransferase (GNAT) domain XM56_18795 PF00485 Phosphoribulokinase / Uridine kinase family XM56_18800 PF02237 Biotin protein ligase C terminal domain XM56_18800 PF03099 Biotin/lipoate A/B protein ligase family XM56_18800 PF08279 HTH domain XM56_18805 PF01565 FAD binding domain XM56_18805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain XM56_18810 PF02371 XM56_18810 XM56_18815 PF13518 Helix-turn-helix domain XM56_18840 PF12724 Flavodoxin domain XM56_18845 PF02386 Cation transport protein XM56_18850 PF01205 Uncharacterized protein family UPF0029 XM56_18850 PF09186 Domain of unknown function (DUF1949) XM56_18855 PF00557 Metallopeptidase family M24 XM56_18860 PF00378 Enoyl-CoA hydratase/isomerase family XM56_18860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain XM56_18860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XM56_18865 PF00108 Thiolase, N-terminal domain XM56_18865 PF02803 Thiolase, C-terminal domain XM56_18870 PF00175 Oxidoreductase NAD-binding domain XM56_18870 PF00970 Oxidoreductase FAD-binding domain XM56_18875 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase XM56_18880 PF02357 Transcription termination factor nusG XM56_18885 PF00490 Delta-aminolevulinic acid dehydratase XM56_18890 PF01026 TatD related DNase XM56_18895 PF00902 Sec-independent protein translocase protein (TatC) XM56_18905 PF02416 mttA/Hcf106 family XM56_18910 PF03109 XM56_18910 XM56_18915 PF02036 SCP-2 sterol transfer family XM56_18920 PF01209 ubiE/COQ5 methyltransferase family XM56_18925 PF02646 XM56_18925 XM56_18930 PF09335 XM56_18930 XM56_18935 PF02554 XM56_18935 XM56_18935 PF13722 XM56_18935 XM56_18940 PF13350 Tyrosine phosphatase family XM56_18945 PF01548 XM56_18945 XM56_18945 PF02371 XM56_18945 XM56_18950 PF01048 Phosphorylase superfamily XM56_18955 PF01738 Dienelactone hydrolase family XM56_18960 PF01717 Cobalamin-independent synthase, Catalytic domain XM56_18960 PF08267 Cobalamin-independent synthase, N-terminal domain XM56_18965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_18965 PF03466 LysR substrate binding domain XM56_18970 PF00892 EamA-like transporter family XM56_18975 PF03547 XM56_18975 XM56_18980 PF03009 Glycerophosphoryl diester phosphodiesterase family XM56_18985 PF00005 ABC transporter XM56_18985 PF08402 TOBE domain XM56_18990 PF00528 Binding-protein-dependent transport system inner membrane component XM56_18995 PF00528 Binding-protein-dependent transport system inner membrane component XM56_19000 PF13416 Bacterial extracellular solute-binding protein XM56_19005 PF04449 CS1 type fimbrial major subunit XM56_19010 PF16967 XM56_19010 XM56_19015 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_19035 PF00005 ABC transporter XM56_19040 PF00005 ABC transporter XM56_19040 PF12399 Branched-chain amino acid ATP-binding cassette transporter XM56_19045 PF02653 XM56_19045 XM56_19045 PF11862 XM56_19045 XM56_19050 PF02653 XM56_19050 XM56_19055 PF13458 Periplasmic binding protein XM56_19060 PF12568 Acetyltransferase (GNAT) domain XM56_19075 PF00140 Sigma-70 factor, region 1 XM56_19075 PF04542 Sigma-70 region 2 XM56_19075 PF04545 Sigma-70, region 4 XM56_19080 PF02687 XM56_19080 XM56_19085 PF00005 ABC transporter XM56_19090 PF00448 SRP54-type protein, GTPase domain XM56_19090 PF02881 SRP54-type protein, helical bundle domain XM56_19095 PF03602 Conserved hypothetical protein 95 XM56_19100 PF06611 XM56_19100 XM56_19105 PF10694 Protein of unknown function (DUF2500) XM56_19110 PF08850 XM56_19110 XM56_19115 PF07947 XM56_19115 XM56_19120 PF00122 E1-E2 ATPase XM56_19120 PF00403 Heavy-metal-associated domain XM56_19120 PF00702 haloacid dehalogenase-like hydrolase XM56_19125 PF01206 Sulfurtransferase TusA XM56_19130 PF02592 XM56_19130 XM56_19135 PF08786 Domain of unknown function (DUF1795) XM56_19140 PF02754 XM56_19140 XM56_19140 PF13183 4Fe-4S dicluster domain XM56_19145 PF00890 FAD binding domain XM56_19150 PF01266 FAD dependent oxidoreductase XM56_19150 PF04324 BFD-like [2Fe-2S] binding domain XM56_19155 PF07690 Major Facilitator Superfamily XM56_19160 PF03009 Glycerophosphoryl diester phosphodiesterase family XM56_19165 PF08282 haloacid dehalogenase-like hydrolase XM56_19170 PF12146 Putative lysophospholipase XM56_19175 PF01810 XM56_19175 XM56_19180 PF01810 XM56_19180 XM56_19185 PF00270 DEAD/DEAH box helicase XM56_19185 PF00271 Helicase conserved C-terminal domain XM56_19185 PF00570 HRDC domain XM56_19185 PF09382 RQC domain XM56_19185 PF16124 XM56_19185 XM56_19190 PF02253 Phospholipase A1 XM56_19195 PF03061 Thioesterase superfamily XM56_19200 PF00892 EamA-like transporter family XM56_19205 PF01544 CorA-like Mg2+ transporter protein XM56_19210 PF09370 TIM-barrel signal transduction protein XM56_19215 PF06792 Uncharacterised protein family (UPF0261) XM56_19220 PF00440 Bacterial regulatory proteins, tetR family XM56_19225 PF00580 UvrD/REP helicase N-terminal domain XM56_19225 PF13361 UvrD-like helicase C-terminal domain XM56_19230 PF13419 Haloacid dehalogenase-like hydrolase XM56_19235 PF00589 Phage integrase family XM56_19235 PF02899 Phage integrase, N-terminal SAM-like domain XM56_19240 PF04340 Protein of unknown function, DUF484 XM56_19245 PF01678 Diaminopimelate epimerase XM56_19250 PF13627 XM56_19250 XM56_19255 PF01491 Frataxin-like domain XM56_19260 PF01295 XM56_19260 XM56_19260 PF12633 XM56_19260 XM56_19265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain XM56_19265 PF03900 Porphobilinogen deaminase, C-terminal domain XM56_19270 PF02602 Uroporphyrinogen-III synthase HemD XM56_19275 PF04375 XM56_19275 XM56_19280 PF07219 XM56_19280 XM56_19285 PF01548 XM56_19285 XM56_19285 PF02371 XM56_19285 XM56_19310 PF00324 Amino acid permease XM56_19315 PF03808 XM56_19315 XM56_19320 PF06899 XM56_19320 XM56_19325 PF07429 XM56_19325 XM56_19330 PF01943 XM56_19330 XM56_19335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family XM56_19340 PF00583 Acetyltransferase (GNAT) family XM56_19345 PF00483 Nucleotidyl transferase XM56_19350 PF16363 XM56_19350 XM56_19355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain XM56_19355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain XM56_19355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XM56_19360 PF02350 UDP-N-acetylglucosamine 2-epimerase XM56_19365 PF02706 Chain length determinant protein XM56_19370 PF00953 Glycosyl transferase family 4 XM56_19375 PF01548 XM56_19375 XM56_19375 PF02371 XM56_19375 XM56_19380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_19380 PF07497 Rho termination factor, RNA-binding domain XM56_19380 PF07498 Rho termination factor, N-terminal domain XM56_19385 PF00085 Thioredoxin XM56_19390 PF00270 DEAD/DEAH box helicase XM56_19390 PF00271 Helicase conserved C-terminal domain XM56_19395 PF02541 Ppx/GppA phosphatase family XM56_19400 PF00295 Glycosyl hydrolases family 28 XM56_19405 PF00580 UvrD/REP helicase N-terminal domain XM56_19405 PF13361 UvrD-like helicase C-terminal domain XM56_19410 PF13616 PPIC-type PPIASE domain XM56_19420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_19420 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_19425 PF00577 Outer membrane usher protein XM56_19425 PF13953 PapC C-terminal domain XM56_19425 PF13954 PapC N-terminal domain XM56_19430 PF00419 Fimbrial protein XM56_19435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain XM56_19435 PF02753 Pili assembly chaperone PapD, C-terminal domain XM56_19440 PF06530 XM56_19440 XM56_19445 PF01320 Colicin immunity protein / pyocin immunity protein XM56_19450 PF01320 Colicin immunity protein / pyocin immunity protein XM56_19460 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain XM56_19460 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain XM56_19465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_19465 PF03466 LysR substrate binding domain XM56_19480 PF01548 XM56_19480 XM56_19480 PF02371 XM56_19480 XM56_19485 PF00291 Pyridoxal-phosphate dependent enzyme XM56_19485 PF00585 C-terminal regulatory domain of Threonine dehydratase XM56_19490 PF00920 Dehydratase family XM56_19495 PF01063 Aminotransferase class IV XM56_19500 PF13710 ACT domain XM56_19505 PF00205 Thiamine pyrophosphate enzyme, central domain XM56_19505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XM56_19505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain XM56_19510 PF01078 Magnesium chelatase, subunit ChlI XM56_19510 PF13335 XM56_19510 XM56_19510 PF13541 Subunit ChlI of Mg-chelatase XM56_19515 PF04219 XM56_19515 XM56_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_19520 PF03466 LysR substrate binding domain XM56_19525 PF02653 XM56_19525 XM56_19530 PF02653 XM56_19530 XM56_19535 PF00005 ABC transporter XM56_19540 PF13407 Periplasmic binding protein domain XM56_19580 PF01177 Asp/Glu/Hydantoin racemase XM56_19585 PF00593 TonB dependent receptor XM56_19585 PF07715 TonB-dependent Receptor Plug Domain XM56_19590 PF05958 tRNA (Uracil-5-)-methyltransferase XM56_19595 PF07226 XM56_19595 XM56_19600 PF00440 Bacterial regulatory proteins, tetR family XM56_19605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XM56_19605 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family XM56_19610 PF03466 LysR substrate binding domain XM56_19615 PF00462 Glutaredoxin XM56_19615 PF08534 Redoxin XM56_19620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain XM56_19620 PF07992 Pyridine nucleotide-disulphide oxidoreductase XM56_19625 PF03544 Gram-negative bacterial TonB protein C-terminal XM56_19630 PF13437 HlyD family secretion protein XM56_19630 PF13533 Biotin-lipoyl like XM56_19635 PF00005 ABC transporter XM56_19635 PF00664 ABC transporter transmembrane region XM56_19640 PF06438 Heme-binding protein A (HasA) XM56_19645 PF06438 Heme-binding protein A (HasA) XM56_19650 PF06438 Heme-binding protein A (HasA) XM56_19655 PF00593 TonB dependent receptor XM56_19655 PF07715 TonB-dependent Receptor Plug Domain XM56_19660 PF00206 Lyase XM56_19660 PF14698 Argininosuccinate lyase C-terminal XM56_19665 PF00696 Amino acid kinase family XM56_19670 PF01118 Semialdehyde dehydrogenase, NAD binding domain XM56_19670 PF02774 Semialdehyde dehydrogenase, dimerisation domain XM56_19675 PF01546 Peptidase family M20/M25/M40 XM56_19675 PF07687 Peptidase dimerisation domain XM56_19680 PF00311 Phosphoenolpyruvate carboxylase XM56_19685 PF02219 Methylenetetrahydrofolate reductase XM56_19690 PF00696 Amino acid kinase family XM56_19690 PF00742 Homoserine dehydrogenase XM56_19690 PF03447 Homoserine dehydrogenase, NAD binding domain XM56_19695 PF01053 Cys/Met metabolism PLP-dependent enzyme XM56_19700 PF01340 Met Apo-repressor, MetJ XM56_19705 PF01197 Ribosomal protein L31 XM56_19710 PF00270 DEAD/DEAH box helicase XM56_19710 PF00271 Helicase conserved C-terminal domain XM56_19715 PF00356 Bacterial regulatory proteins, lacI family XM56_19715 PF13377 Periplasmic binding protein-like domain XM56_19720 PF05036 Sporulation related domain XM56_19725 PF00227 Proteasome subunit XM56_19730 PF00004 ATPase family associated with various cellular activities (AAA) XM56_19730 PF07724 AAA domain (Cdc48 subfamily) XM56_19730 PF10431 C-terminal, D2-small domain, of ClpB protein XM56_19735 PF01040 UbiA prenyltransferase family XM56_19740 PF03737 Demethylmenaquinone methyltransferase XM56_19745 PF06005 Protein of unknown function (DUF904) XM56_19750 PF00230 Major intrinsic protein XM56_19755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain XM56_19755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain XM56_19760 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded XM56_19765 PF07690 Major Facilitator Superfamily XM56_19775 PF05593 XM56_19775 XM56_19780 PF00175 Oxidoreductase NAD-binding domain XM56_19780 PF00970 Oxidoreductase FAD-binding domain XM56_19785 PF05656 XM56_19785 XM56_19790 PF07305 XM56_19790 XM56_19795 PF00121 Triosephosphate isomerase XM56_19800 PF15644 Papain fold toxin 1 XM56_19805 PF13531 Bacterial extracellular solute-binding protein XM56_19810 PF00365 Phosphofructokinase XM56_19815 PF01545 Cation efflux family XM56_19815 PF16916 XM56_19815 XM56_19820 PF07813 LTXXQ motif family protein XM56_19825 PF00072 Response regulator receiver domain XM56_19825 PF00486 Transcriptional regulatory protein, C terminal XM56_19830 PF00512 His Kinase A (phospho-acceptor) domain XM56_19830 PF00672 HAMP domain XM56_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_19830 PF16527 XM56_19830 XM56_19835 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain XM56_19835 PF02805 Metal binding domain of Ada XM56_19835 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain XM56_19835 PF12833 Helix-turn-helix domain XM56_19840 PF00588 SpoU rRNA Methylase family XM56_19845 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_19845 PF06426 Serine acetyltransferase, N-terminal XM56_19850 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XM56_19850 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus XM56_19855 PF02556 Preprotein translocase subunit SecB XM56_19860 PF00462 Glutaredoxin XM56_19865 PF00581 Rhodanese-like domain XM56_19870 PF01676 Metalloenzyme superfamily XM56_19870 PF06415 BPG-independent PGAM N-terminus (iPGM_N) XM56_19875 PF01551 Peptidase family M23 XM56_19880 PF04748 Divergent polysaccharide deacetylase XM56_19890 PF05231 XM56_19890 XM56_19900 PF00107 Zinc-binding dehydrogenase XM56_19900 PF08240 Alcohol dehydrogenase GroES-like domain XM56_19905 PF00155 Aminotransferase class I and II XM56_19910 PF01370 NAD dependent epimerase/dehydratase family XM56_19915 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XM56_19920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) XM56_19925 PF00534 Glycosyl transferases group 1 XM56_19925 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) XM56_19930 PF00535 Glycosyl transferase family 2 XM56_19935 PF01467 Cytidylyltransferase XM56_19940 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain XM56_19940 PF06827 Zinc finger found in FPG and IleRS XM56_19940 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain XM56_19945 PF00471 Ribosomal protein L33 XM56_19950 PF00830 Ribosomal L28 family XM56_19955 PF04002 RadC-like JAB domain XM56_19960 PF02441 Flavoprotein XM56_19960 PF04127 DNA / pantothenate metabolism flavoprotein XM56_19965 PF00692 dUTPase XM56_19970 PF00440 Bacterial regulatory proteins, tetR family XM56_19975 PF00156 Phosphoribosyl transferase domain XM56_19980 PF01138 3' exoribonuclease family, domain 1 XM56_19980 PF03725 3' exoribonuclease family, domain 2 XM56_19985 PF03755 XM56_19985 XM56_19985 PF08340 XM56_19985 XM56_19990 PF00753 Metallo-beta-lactamase superfamily XM56_20000 PF00563 EAL domain XM56_20000 PF00990 GGDEF domain XM56_20000 PF13426 PAS domain XM56_20005 PF00378 Enoyl-CoA hydratase/isomerase family XM56_20010 PF01773 Na+ dependent nucleoside transporter N-terminus XM56_20010 PF07662 Na+ dependent nucleoside transporter C-terminus XM56_20010 PF07670 Nucleoside recognition XM56_20015 PF12098 XM56_20015 XM56_20020 PF03458 XM56_20020 XM56_20025 PF01653 NAD-dependent DNA ligase adenylation domain XM56_20025 PF03120 NAD-dependent DNA ligase OB-fold domain XM56_20030 PF00625 Guanylate kinase XM56_20035 PF01192 RNA polymerase Rpb6 XM56_20040 PF02824 TGS domain XM56_20040 PF04607 Region found in RelA / SpoT proteins XM56_20040 PF13291 ACT domain XM56_20040 PF13328 HD domain XM56_20045 PF00588 SpoU rRNA Methylase family XM56_20045 PF12105 SpoU, rRNA methylase, C-terminal XM56_20050 PF00270 DEAD/DEAH box helicase XM56_20050 PF00271 Helicase conserved C-terminal domain XM56_20050 PF17191 XM56_20050 XM56_20055 PF01548 XM56_20055 XM56_20055 PF02371 XM56_20055 XM56_20060 PF03616 XM56_20060 XM56_20065 PF00860 Permease family XM56_20075 PF00196 Bacterial regulatory proteins, luxR family XM56_20075 PF08448 PAS fold XM56_20080 PF00196 Bacterial regulatory proteins, luxR family XM56_20080 PF08448 PAS fold XM56_20085 PF13693 Winged helix-turn-helix DNA-binding XM56_20090 PF00583 Acetyltransferase (GNAT) family XM56_20090 PF09500 Putative thioesterase (yiiD_Cterm) XM56_20095 PF02580 D-Tyr-tRNA(Tyr) deacylase XM56_20100 PF03631 XM56_20100 XM56_20105 PF13419 Haloacid dehalogenase-like hydrolase XM56_20110 PF00009 Elongation factor Tu GTP binding domain XM56_20110 PF00679 Elongation factor G C-terminus XM56_20110 PF03144 Elongation factor Tu domain 2 XM56_20115 PF00120 Glutamine synthetase, catalytic domain XM56_20115 PF03951 Glutamine synthetase, beta-Grasp domain XM56_20125 PF00512 His Kinase A (phospho-acceptor) domain XM56_20125 PF00989 PAS fold XM56_20125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_20130 PF00072 Response regulator receiver domain XM56_20130 PF00158 Sigma-54 interaction domain XM56_20130 PF02954 Bacterial regulatory protein, Fis family XM56_20135 PF04055 Radical SAM superfamily XM56_20135 PF06969 HemN C-terminal domain XM56_20140 PF04220 XM56_20140 XM56_20145 PF01926 50S ribosome-binding GTPase XM56_20150 PF00476 DNA polymerase family A XM56_20150 PF01367 5'-3' exonuclease, C-terminal SAM fold XM56_20150 PF01612 3'-5' exonuclease XM56_20150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain XM56_20155 PF01323 DSBA-like thioredoxin domain XM56_20160 PF01636 Phosphotransferase enzyme family XM56_20165 PF06288 Protein of unknown function (DUF1040) XM56_20170 PF12804 MobA-like NTP transferase domain XM56_20175 PF03205 Molybdopterin guanine dinucleotide synthesis protein B XM56_20180 PF00665 Integrase core domain XM56_20190 PF13518 Helix-turn-helix domain XM56_20215 PF00392 Bacterial regulatory proteins, gntR family XM56_20215 PF07729 FCD domain XM56_20225 PF00356 Bacterial regulatory proteins, lacI family XM56_20225 PF13377 Periplasmic binding protein-like domain XM56_20230 PF00294 pfkB family carbohydrate kinase XM56_20235 PF13407 Periplasmic binding protein domain XM56_20240 PF02653 XM56_20240 XM56_20245 PF00005 ABC transporter XM56_20250 PF05025 RbsD / FucU transport protein family XM56_20255 PF02705 XM56_20255 XM56_20260 PF07728 AAA domain (dynein-related subfamily) XM56_20260 PF12592 Protein of unknown function (DUF3763) XM56_20265 PF05762 VWA domain containing CoxE-like protein XM56_20270 PF07077 XM56_20270 XM56_20275 PF03590 Aspartate-ammonia ligase XM56_20280 PF01037 AsnC family XM56_20280 PF13404 AsnC-type helix-turn-helix domain XM56_20285 PF00258 Flavodoxin XM56_20290 PF01134 Glucose inhibited division protein A XM56_20290 PF13932 GidA associated domain 3 XM56_20295 PF02527 rRNA small subunit methyltransferase G XM56_20300 PF03899 XM56_20300 XM56_20305 PF00119 ATP synthase A chain XM56_20310 PF00137 ATP synthase subunit C XM56_20315 PF00430 ATP synthase B/B' CF(0) XM56_20320 PF00213 ATP synthase delta (OSCP) subunit XM56_20325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_20325 PF00306 ATP synthase alpha/beta chain, C terminal domain XM56_20325 PF02874 ATP synthase alpha/beta family, beta-barrel domain XM56_20330 PF00231 ATP synthase XM56_20335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_20335 PF02874 ATP synthase alpha/beta family, beta-barrel domain XM56_20340 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain XM56_20340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain XM56_20345 PF00132 Bacterial transferase hexapeptide (six repeats) XM56_20345 PF12804 MobA-like NTP transferase domain XM56_20350 PF01380 SIS domain XM56_20350 PF13522 Glutamine amidotransferase domain XM56_20360 PF12849 PBP superfamily domain XM56_20365 PF00528 Binding-protein-dependent transport system inner membrane component XM56_20370 PF00528 Binding-protein-dependent transport system inner membrane component XM56_20375 PF00005 ABC transporter XM56_20380 PF01895 PhoU domain XM56_20385 PF04519 XM56_20385 XM56_20390 PF00497 Bacterial extracellular solute-binding proteins, family 3 XM56_20395 PF00528 Binding-protein-dependent transport system inner membrane component XM56_20400 PF00528 Binding-protein-dependent transport system inner membrane component XM56_20405 PF13419 Haloacid dehalogenase-like hydrolase XM56_20410 PF00860 Permease family XM56_20415 PF03928 Domain of unknown function (DUF336) XM56_20420 PF00072 Response regulator receiver domain XM56_20420 PF00196 Bacterial regulatory proteins, luxR family XM56_20425 PF00512 His Kinase A (phospho-acceptor) domain XM56_20425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase XM56_20430 PF03358 NADPH-dependent FMN reductase XM56_20435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain XM56_20435 PF02743 Cache domain XM56_20440 PF00528 Binding-protein-dependent transport system inner membrane component XM56_20445 PF00005 ABC transporter XM56_20445 PF09383 NIL domain XM56_20450 PF03180 NLPA lipoprotein XM56_20455 PF07055 Enoyl reductase FAD binding domain XM56_20455 PF12241 Trans-2-enoyl-CoA reductase catalytic region XM56_20455 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase XM56_20460 PF01926 50S ribosome-binding GTPase XM56_20460 PF10396 GTP-binding protein TrmE N-terminus XM56_20460 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE XM56_20465 PF02096 60Kd inner membrane protein XM56_20465 PF14849 YidC periplasmic domain XM56_20470 PF01809 XM56_20470 XM56_20475 PF00825 Ribonuclease P XM56_20480 PF00468 Ribosomal protein L34 XM56_20490 PF10723 Replication regulatory protein RepB XM56_20495 PF02387 XM56_20495 XM56_20510 PF00069 Protein kinase domain XM56_20510 PF09632 Rac1-binding domain XM56_20515 PF03421 XM56_20515 XM56_20520 PF05818 XM56_20520 XM56_20535 PF03543 Yersinia/Haemophilus virulence surface antigen XM56_20540 PF05932 Tir chaperone protein (CesT) family XM56_20550 PF00665 Integrase core domain XM56_20550 PF13276 XM56_20550 XM56_20570 PF12468 Type III secretion system leucine rich repeat protein XM56_20580 PF00872 XM56_20580 XM56_20585 PF05844 YopD protein XM56_20590 PF04888 XM56_20590 XM56_20595 PF07720 Tetratricopeptide repeat XM56_20600 PF04792 V antigen (LcrV) protein XM56_20605 PF07216 XM56_20605 XM56_20610 PF09621 XM56_20610 XM56_20615 PF00771 FHIPEP family XM56_20625 PF09474 XM56_20625 XM56_20635 PF09059 TyeA XM56_20640 PF07201 HrpJ-like domain XM56_20645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain XM56_20645 PF02874 ATP synthase alpha/beta family, beta-barrel domain XM56_20650 PF07321 Type III secretion protein YscO XM56_20655 PF02120 Flagellar hook-length control protein FliK XM56_20660 PF01052 Surface presentation of antigens (SPOA) XM56_20665 PF00813 XM56_20665 XM56_20670 PF01313 XM56_20670 XM56_20675 PF01311 XM56_20675 XM56_20680 PF01312 FlhB HrpN YscU SpaS Family XM56_20685 PF09619 Type III secretion system lipoprotein chaperone (YscW) XM56_20690 PF12833 Helix-turn-helix domain XM56_20695 PF17551 XM56_20695 XM56_20700 PF05932 Tir chaperone protein (CesT) family XM56_20705 PF00263 XM56_20705 XM56_20705 PF03958 Bacterial type II/III secretion system short domain XM56_20710 PF16693 XM56_20710 XM56_20710 PF16697 XM56_20710 XM56_20715 PF08988 Protein of unknown function (DUF1895) XM56_20720 PF09392 Type III secretion needle MxiH like XM56_20725 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) XM56_20730 PF09025 YopR Core XM56_20735 PF17001 XM56_20735 XM56_20740 PF01514 Secretory protein of YscJ/FliF family XM56_20745 PF06578 XM56_20745 XM56_20750 PF02108 XM56_20750 XM56_20755 PF09013 YopH, N-terminal XM56_20765 PF00102 Protein-tyrosine phosphatase XM56_20765 PF09013 YopH, N-terminal XM56_20770 PF05932 Tir chaperone protein (CesT) family XM56_20780 PF01527 Transposase XM56_20785 PF05932 Tir chaperone protein (CesT) family XM56_20790 PF03545 Yersinia virulence determinant (YopE) XM56_20790 PF09020 YopE, N terminal XM56_20795 PF05016 Plasmid stabilisation system protein XM56_20800 PF03693 Uncharacterised protein family (UPF0156) XM56_20805 PF02195 ParB-like nuclease domain XM56_20810 PF00376 MerR family regulatory protein XM56_20810 PF13614 AAA domain XM56_20835 PF00665 Integrase core domain XM56_20835 PF13276 XM56_20835 XM56_20840 PF09013 YopH, N-terminal XM56_20850 PF00665 Integrase core domain XM56_20855 PF03895 YadA-like C-terminal region XM56_20855 PF05658 Head domain of trimeric autotransporter adhesin XM56_20855 PF05662 Coiled stalk of trimeric autotransporter adhesin XM56_20860 PF00892 EamA-like transporter family XM56_20865 PF00196 Bacterial regulatory proteins, luxR family XM56_20870 PF01526 XM56_20870 XM56_20870 PF13700 XM56_20870 XM56_20875 PF00239 Resolvase, N terminal domain XM56_20875 PF02796 Helix-turn-helix domain of resolvase XM56_20880 PF03960 ArsC family XM56_20885 PF02040 XM56_20885 XM56_20890 PF01022 Bacterial regulatory protein, arsR family XM56_20895 PF03358 NADPH-dependent FMN reductase XM56_20900 PF07057 DNA helicase TraI XM56_20905 PF00665 Integrase core domain XM56_20905 PF13276 XM56_20905 XM56_20915 PF10881 XM56_20915 XM56_20925 PF01527 Transposase XM56_20935 PF13091 PLD-like domain