XM56_00005 SM00382 ATPases associated with a variety of cellular activities XM56_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain XM56_00010 SM00480 DNA polymerase III beta subunit XM56_00020 SM00387 Histidine kinase-like ATPases XM56_00020 SM00433 TopoisomeraseII XM56_00070 SM00642 Alpha-amylase domain XM56_00150 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_00160 SM00966 SpoVT / AbrB like domain XM56_00175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_00175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_00175 SM01358 XM56_00175 XM56_00190 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_00235 SM00342 helix_turn_helix, arabinose operon control protein XM56_00265 SM00382 ATPases associated with a variety of cellular activities XM56_00275 SM00342 helix_turn_helix, arabinose operon control protein XM56_00305 SM00382 ATPases associated with a variety of cellular activities XM56_00380 SM00354 helix_turn _helix lactose operon repressor XM56_00415 SM00912 haemagglutination activity domain XM56_00425 SM00912 haemagglutination activity domain XM56_00445 SM00387 Histidine kinase-like ATPases XM56_00450 SM00421 helix_turn_helix, Lux Regulon XM56_00450 SM00448 cheY-homologous receiver domain XM56_00485 SM00382 ATPases associated with a variety of cellular activities XM56_00490 SM00382 ATPases associated with a variety of cellular activities XM56_00545 SM00052 Putative diguanylate phosphodiesterase XM56_00585 SM00052 Putative diguanylate phosphodiesterase XM56_00605 SM00869 Autotransporter beta-domain XM56_00635 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase XM56_00785 SM00354 helix_turn _helix lactose operon repressor XM56_00805 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM56_00830 SM00642 Alpha-amylase domain XM56_00835 SM00642 Alpha-amylase domain XM56_00865 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_00865 SM01134 XM56_00865 XM56_00875 SM00450 Rhodanese Homology Domain XM56_00885 SM00421 helix_turn_helix, Lux Regulon XM56_00935 SM00899 XM56_00935 XM56_00940 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_00940 SM00732 Likely ribonuclease with RNase H fold. XM56_00970 SM00448 cheY-homologous receiver domain XM56_00970 SM00862 Transcriptional regulatory protein, C terminal XM56_00975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_00975 SM00387 Histidine kinase-like ATPases XM56_00975 SM00388 His Kinase A (phosphoacceptor) domain XM56_00995 SM00363 S4 RNA-binding domain XM56_01110 SM00354 helix_turn _helix lactose operon repressor XM56_01125 SM00382 ATPases associated with a variety of cellular activities XM56_01145 SM00100 Cyclic nucleotide-monophosphate binding domain XM56_01145 SM00419 helix_turn_helix, cAMP Regulatory protein XM56_01180 SM00062 Bacterial periplasmic substrate-binding proteins XM56_01185 SM00382 ATPases associated with a variety of cellular activities XM56_01210 SM00382 ATPases associated with a variety of cellular activities XM56_01275 SM00838 Elongation factor G C-terminus XM56_01275 SM00889 Elongation factor G, domain IV XM56_01295 SM01403 XM56_01295 XM56_01315 SM01382 XM56_01315 XM56_01315 SM01383 XM56_01315 XM56_01330 SM00322 K homology RNA-binding domain XM56_01350 SM01374 XM56_01350 XM56_01355 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XM56_01420 SM00363 S4 RNA-binding domain XM56_01420 SM01390 XM56_01420 XM56_01425 SM00662 RNA polymerases D XM56_01440 SM00422 helix_turn_helix, mercury resistance XM56_01565 SM00346 helix_turn_helix isocitrate lyase regulation XM56_01570 SM01018 B12 binding domain XM56_01575 SM00912 haemagglutination activity domain XM56_01620 SM00382 ATPases associated with a variety of cellular activities XM56_01650 SM00563 Phosphate acyltransferases XM56_01695 SM00829 Enoylreductase XM56_01700 SM00382 ATPases associated with a variety of cellular activities XM56_01705 SM01005 Alanine racemase, C-terminal domain XM56_01755 SM00382 ATPases associated with a variety of cellular activities XM56_01785 SM00530 Helix-turn-helix XRE-family like proteins XM56_01820 SM00382 ATPases associated with a variety of cellular activities XM56_01835 SM00062 Bacterial periplasmic substrate-binding proteins XM56_01855 SM00357 Cold shock protein domain XM56_01860 SM00357 Cold shock protein domain XM56_01870 SM00267 diguanylate cyclase XM56_01900 SM00878 Biotin carboxylase C-terminal domain XM56_01925 SM00829 Enoylreductase XM56_01930 SM00052 Putative diguanylate phosphodiesterase XM56_01930 SM00267 diguanylate cyclase XM56_01955 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_02145 SM00530 Helix-turn-helix XRE-family like proteins XM56_02155 SM00831 Cation transporter/ATPase, N-terminus XM56_02160 SM00354 helix_turn _helix lactose operon repressor XM56_02170 SM00642 Alpha-amylase domain XM56_02180 SM00460 Transglutaminase/protease-like homologues XM56_02235 SM00382 ATPases associated with a variety of cellular activities XM56_02265 SM00382 ATPases associated with a variety of cellular activities XM56_02300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM56_02305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM56_02360 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_02365 SM00073 Histidine Phosphotransfer domain XM56_02365 SM00091 PAS domain XM56_02365 SM00387 Histidine kinase-like ATPases XM56_02365 SM00388 His Kinase A (phosphoacceptor) domain XM56_02365 SM00448 cheY-homologous receiver domain XM56_02380 SM00749 bacterial OsmY and nodulation domain XM56_02440 SM00829 Enoylreductase XM56_02500 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_02500 SM00895 XM56_02500 XM56_02520 SM00858 XM56_02520 XM56_02555 SM00869 Autotransporter beta-domain XM56_02565 SM00869 Autotransporter beta-domain XM56_02660 SM00400 zinc finger XM56_02660 SM00493 XM56_02660 XM56_02660 SM00766 DNA primase DnaG DnaB-binding XM56_02675 SM01207 XM56_02675 XM56_02680 SM00905 Dihydroneopterin aldolase XM56_02690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_02695 SM00287 Bacterial SH3 domain homologues XM56_02700 SM01118 XM56_02700 XM56_02770 SM00387 Histidine kinase-like ATPases XM56_02770 SM00433 TopoisomeraseII XM56_02790 SM00434 DNA Topoisomerase IV XM56_02795 SM00563 Phosphate acyltransferases XM56_02805 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_02820 SM00342 helix_turn_helix, arabinose operon control protein XM56_02935 SM00342 helix_turn_helix, arabinose operon control protein XM56_02960 SM00382 ATPases associated with a variety of cellular activities XM56_02990 SM00382 ATPases associated with a variety of cellular activities XM56_03020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_03065 SM00382 ATPases associated with a variety of cellular activities XM56_03090 SM00382 ATPases associated with a variety of cellular activities XM56_03115 SM00858 XM56_03115 XM56_03185 SM00862 Transcriptional regulatory protein, C terminal XM56_03315 SM00052 Putative diguanylate phosphodiesterase XM56_03315 SM00091 PAS domain XM56_03315 SM00267 diguanylate cyclase XM56_03360 SM00354 helix_turn _helix lactose operon repressor XM56_03410 SM00382 ATPases associated with a variety of cellular activities XM56_03530 SM00478 endonuclease III XM56_03530 SM00525 XM56_03530 XM56_03555 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_03565 SM01152 XM56_03565 XM56_03600 SM00732 Likely ribonuclease with RNase H fold. XM56_03625 SM00731 SprT homologues. XM56_03630 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM56_03665 SM00861 Transketolase, pyrimidine binding domain XM56_03670 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM56_03685 SM00194 Protein tyrosine phosphatase, catalytic domain XM56_03685 SM00404 Protein tyrosine phosphatase, catalytic domain motif XM56_03870 SM00257 Lysin motif XM56_03880 SM00533 DNA-binding domain of DNA mismatch repair MUTS family XM56_03880 SM00534 ATPase domain of DNA mismatch repair MUTS family XM56_03950 SM00382 ATPases associated with a variety of cellular activities XM56_03960 SM00382 ATPases associated with a variety of cellular activities XM56_03970 SM00825 Beta-ketoacyl synthase XM56_03985 SM00822 XM56_03985 XM56_04000 SM01235 XM56_04000 XM56_04010 SM00838 Elongation factor G C-terminus XM56_04010 SM00889 Elongation factor G, domain IV XM56_04015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM56_04055 SM01012 XM56_04055 XM56_04070 SM00382 ATPases associated with a variety of cellular activities XM56_04100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_04135 SM00382 ATPases associated with a variety of cellular activities XM56_04145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XM56_04190 SM01091 Transporter associated domain XM56_04200 SM00382 ATPases associated with a variety of cellular activities XM56_04200 SM00962 SRP54-type protein, GTPase domain XM56_04200 SM00963 SRP54-type protein, helical bundle domain XM56_04235 SM00448 cheY-homologous receiver domain XM56_04235 SM00850 LytTr DNA-binding domain XM56_04245 SM00830 Chorismate mutase type II XM56_04250 SM00830 Chorismate mutase type II XM56_04265 SM00382 ATPases associated with a variety of cellular activities XM56_04265 SM01086 C-terminal, D2-small domain, of ClpB protein XM56_04275 SM00363 S4 RNA-binding domain XM56_04320 SM00155 Phospholipase D. Active site motifs. XM56_04325 SM00881 CoA binding domain XM56_04330 SM01144 XM56_04330 XM56_04340 SM00967 RNA 2'-O ribose methyltransferase substrate binding XM56_04370 SM00347 helix_turn_helix multiple antibiotic resistance protein XM56_04420 SM00062 Bacterial periplasmic substrate-binding proteins XM56_04435 SM00382 ATPases associated with a variety of cellular activities XM56_04465 SM01007 Class II Aldolase and Adducin N-terminal domain XM56_04495 SM00710 Parallel beta-helix repeats XM56_04535 SM00900 XM56_04535 XM56_04615 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XM56_04625 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_04625 SM00866 XM56_04625 XM56_04645 SM01068 Putative carbohydrate binding domain XM56_04715 SM00448 cheY-homologous receiver domain XM56_04715 SM00862 Transcriptional regulatory protein, C terminal XM56_04720 SM00091 PAS domain XM56_04720 SM00387 Histidine kinase-like ATPases XM56_04720 SM00388 His Kinase A (phosphoacceptor) domain XM56_04740 SM00642 Alpha-amylase domain XM56_04790 SM01323 XM56_04790 XM56_04855 SM00861 Transketolase, pyrimidine binding domain XM56_04870 SM00981 XM56_04870 XM56_04955 SM00382 ATPases associated with a variety of cellular activities XM56_04955 SM00994 ClpX C4-type zinc finger XM56_04955 SM01086 C-terminal, D2-small domain, of ClpB protein XM56_04960 SM00382 ATPases associated with a variety of cellular activities XM56_04960 SM00464 Found in ATP-dependent protease La (LON) XM56_04965 SM00411 bacterial (prokaryotic) histone like domain XM56_04975 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM56_05005 SM00344 helix_turn_helix ASNC type XM56_05010 SM00382 ATPases associated with a variety of cellular activities XM56_05015 SM00382 ATPases associated with a variety of cellular activities XM56_05020 SM00938 Nitrogen regulatory protein P-II XM56_05060 SM00382 ATPases associated with a variety of cellular activities XM56_05155 SM00382 ATPases associated with a variety of cellular activities XM56_05165 SM00493 XM56_05165 XM56_05170 SM00387 Histidine kinase-like ATPases XM56_05270 SM00422 helix_turn_helix, mercury resistance XM56_05280 SM00244 prohibitin homologues XM56_05290 SM00822 XM56_05290 XM56_05300 SM00382 ATPases associated with a variety of cellular activities XM56_05315 SM01001 AIR carboxylase XM56_05330 SM00840 XM56_05330 XM56_05355 SM00382 ATPases associated with a variety of cellular activities XM56_05370 SM00448 cheY-homologous receiver domain XM56_05370 SM00862 Transcriptional regulatory protein, C terminal XM56_05390 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XM56_05405 SM00382 ATPases associated with a variety of cellular activities XM56_05430 SM00421 helix_turn_helix, Lux Regulon XM56_05440 SM00357 Cold shock protein domain XM56_05450 SM00267 diguanylate cyclase XM56_05460 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_05475 SM00936 Penicillin-binding protein 5, C-terminal domain XM56_05530 SM00382 ATPases associated with a variety of cellular activities XM56_05545 SM00062 Bacterial periplasmic substrate-binding proteins XM56_05560 SM00116 Domain in cystathionine beta-synthase and other proteins. XM56_05560 SM01091 Transporter associated domain XM56_05575 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_05655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_05690 SM00448 cheY-homologous receiver domain XM56_05690 SM00862 Transcriptional regulatory protein, C terminal XM56_05695 SM00387 Histidine kinase-like ATPases XM56_05695 SM00388 His Kinase A (phosphoacceptor) domain XM56_05760 SM00796 Allophanate hydrolase subunit 1 XM56_05765 SM00797 Allophanate hydrolase subunit 2 XM56_05815 SM00861 Transketolase, pyrimidine binding domain XM56_05830 SM00881 CoA binding domain XM56_05930 SM00855 Phosphoglycerate mutase family XM56_05935 SM00477 DNA/RNA non-specific endonuclease XM56_05935 SM00892 DNA/RNA non-specific endonuclease XM56_05980 SM00382 ATPases associated with a variety of cellular activities XM56_06010 SM00487 DEAD-like helicases superfamily XM56_06020 SM00990 XM56_06020 XM56_06030 SM00482 DNA polymerase A domain XM56_06060 SM00530 Helix-turn-helix XRE-family like proteins XM56_06065 SM00530 Helix-turn-helix XRE-family like proteins XM56_06195 SM00382 ATPases associated with a variety of cellular activities XM56_06215 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_06215 SM00876 Biotin and Thiamin Synthesis associated domain XM56_06235 SM00382 ATPases associated with a variety of cellular activities XM56_06240 SM00487 DEAD-like helicases superfamily XM56_06240 SM00490 helicase superfamily c-terminal domain XM56_06255 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_06290 SM00382 ATPases associated with a variety of cellular activities XM56_06305 SM00487 DEAD-like helicases superfamily XM56_06305 SM00490 helicase superfamily c-terminal domain XM56_06320 SM00116 Domain in cystathionine beta-synthase and other proteins. XM56_06340 SM01118 XM56_06340 XM56_06345 SM00507 HNH nucleases XM56_06360 SM00382 ATPases associated with a variety of cellular activities XM56_06405 SM00382 ATPases associated with a variety of cellular activities XM56_06410 SM00450 Rhodanese Homology Domain XM56_06435 SM00382 ATPases associated with a variety of cellular activities XM56_06480 SM00487 DEAD-like helicases superfamily XM56_06480 SM00488 XM56_06480 XM56_06480 SM00491 XM56_06480 XM56_06505 SM00903 Flavin reductase like domain XM56_06515 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_06515 SM00091 PAS domain XM56_06515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_06520 SM00382 ATPases associated with a variety of cellular activities XM56_06530 SM00062 Bacterial periplasmic substrate-binding proteins XM56_06530 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM56_06560 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. XM56_06600 SM00382 ATPases associated with a variety of cellular activities XM56_06615 SM00852 Probable molybdopterin binding domain XM56_06630 SM00382 ATPases associated with a variety of cellular activities XM56_06655 SM00829 Enoylreductase XM56_06680 SM00354 helix_turn _helix lactose operon repressor XM56_06690 SM00382 ATPases associated with a variety of cellular activities XM56_06700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XM56_06700 SM00382 ATPases associated with a variety of cellular activities XM56_06705 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_06785 SM00919 Malic enzyme, NAD binding domain XM56_06785 SM01274 XM56_06785 XM56_06860 SM01091 Transporter associated domain XM56_06900 SM00382 ATPases associated with a variety of cellular activities XM56_06925 SM01350 XM56_06925 XM56_06985 SM00382 ATPases associated with a variety of cellular activities XM56_07035 SM00382 ATPases associated with a variety of cellular activities XM56_07070 SM00877 XM56_07070 XM56_07075 SM00877 XM56_07075 XM56_07115 SM00877 XM56_07115 XM56_07120 SM00877 XM56_07120 XM56_07150 SM00877 XM56_07150 XM56_07155 SM00877 XM56_07155 XM56_07165 SM00342 helix_turn_helix, arabinose operon control protein XM56_07245 SM00382 ATPases associated with a variety of cellular activities XM56_07265 SM00855 Phosphoglycerate mutase family XM56_07285 SM00421 helix_turn_helix, Lux Regulon XM56_07330 SM00382 ATPases associated with a variety of cellular activities XM56_07330 SM01086 C-terminal, D2-small domain, of ClpB protein XM56_07440 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_07440 SM01134 XM56_07440 XM56_07450 SM00260 Two component signalling adaptor domain XM56_07450 SM00448 cheY-homologous receiver domain XM56_07460 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_07480 SM00382 ATPases associated with a variety of cellular activities XM56_07500 SM00387 Histidine kinase-like ATPases XM56_07505 SM00421 helix_turn_helix, Lux Regulon XM56_07505 SM00448 cheY-homologous receiver domain XM56_07510 SM00448 cheY-homologous receiver domain XM56_07515 SM00091 PAS domain XM56_07515 SM00387 Histidine kinase-like ATPases XM56_07640 SM00062 Bacterial periplasmic substrate-binding proteins XM56_07640 SM00387 Histidine kinase-like ATPases XM56_07640 SM00388 His Kinase A (phosphoacceptor) domain XM56_07640 SM00448 cheY-homologous receiver domain XM56_07645 SM00421 helix_turn_helix, Lux Regulon XM56_07645 SM00448 cheY-homologous receiver domain XM56_07720 SM00344 helix_turn_helix ASNC type XM56_07730 SM00829 Enoylreductase XM56_07740 SM01038 Beta galactosidase small chain XM56_07745 SM00354 helix_turn _helix lactose operon repressor XM56_07750 SM00357 Cold shock protein domain XM56_07760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_07760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_07780 SM00831 Cation transporter/ATPase, N-terminus XM56_07785 SM00829 Enoylreductase XM56_07815 SM00073 Histidine Phosphotransfer domain XM56_07815 SM00260 Two component signalling adaptor domain XM56_07815 SM00387 Histidine kinase-like ATPases XM56_07815 SM01231 XM56_07815 XM56_07820 SM00260 Two component signalling adaptor domain XM56_07825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_07825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_07825 SM00319 Homologues of the ligand binding domain of Tar XM56_07830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_07830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_07830 SM00319 Homologues of the ligand binding domain of Tar XM56_07835 SM00138 Methyltransferase, chemotaxis proteins XM56_07840 SM00448 cheY-homologous receiver domain XM56_07845 SM00448 cheY-homologous receiver domain XM56_07875 SM00634 Bacterial Ig-like domain (group 1) XM56_07890 SM00858 XM56_07890 XM56_07935 SM00047 Lysozyme subfamily 2 XM56_07995 SM00382 ATPases associated with a variety of cellular activities XM56_08050 SM00478 endonuclease III XM56_08055 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_08060 SM00342 helix_turn_helix, arabinose operon control protein XM56_08110 SM00062 Bacterial periplasmic substrate-binding proteins XM56_08110 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM56_08120 SM00382 ATPases associated with a variety of cellular activities XM56_08180 SM00530 Helix-turn-helix XRE-family like proteins XM56_08185 SM00612 XM56_08185 XM56_08200 SM00903 Flavin reductase like domain XM56_08275 SM00642 Alpha-amylase domain XM56_08295 SM00421 helix_turn_helix, Lux Regulon XM56_08295 SM00448 cheY-homologous receiver domain XM56_08300 SM00465 GIY-YIG type nucleases (URI domain) XM56_08510 SM00530 Helix-turn-helix XRE-family like proteins XM56_08590 SM01400 XM56_08590 XM56_08610 SM00937 XM56_08610 XM56_08640 SM00267 diguanylate cyclase XM56_08665 SM00481 DNA polymerase alpha chain like domain XM56_08735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_08735 SM00387 Histidine kinase-like ATPases XM56_08750 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_08810 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_08810 SM00866 XM56_08810 XM56_08835 SM00869 Autotransporter beta-domain XM56_08850 SM00257 Lysin motif XM56_08890 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_08890 SM01134 XM56_08890 XM56_08910 SM00363 S4 RNA-binding domain XM56_08960 SM00834 Putative regulatory protein XM56_08985 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM56_08990 SM00382 ATPases associated with a variety of cellular activities XM56_09005 SM00382 ATPases associated with a variety of cellular activities XM56_09015 SM00257 Lysin motif XM56_09070 SM00487 DEAD-like helicases superfamily XM56_09070 SM00491 XM56_09070 XM56_09090 SM00341 Helicase and RNase D C-terminal XM56_09090 SM00474 3'-5' exonuclease XM56_09175 SM01022 XM56_09175 XM56_09185 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_09185 SM00091 PAS domain XM56_09185 SM00267 diguanylate cyclase XM56_09190 SM00972 Spore Coat Protein U domain XM56_09205 SM00972 Spore Coat Protein U domain XM56_09210 SM00972 Spore Coat Protein U domain XM56_09215 SM00972 Spore Coat Protein U domain XM56_09240 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XM56_09245 SM00945 ProQ/FINO family XM56_09250 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM56_09250 SM00245 tail specific protease XM56_09275 SM00346 helix_turn_helix isocitrate lyase regulation XM56_09280 SM00644 XM56_09280 XM56_09310 SM00382 ATPases associated with a variety of cellular activities XM56_09395 SM00382 ATPases associated with a variety of cellular activities XM56_09445 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain XM56_09470 SM00873 B3/4 domain XM56_09470 SM00874 tRNA synthetase B5 domain XM56_09470 SM00896 Ferredoxin-fold anticodon binding domain XM56_09475 SM00411 bacterial (prokaryotic) histone like domain XM56_09500 SM00382 ATPases associated with a variety of cellular activities XM56_09620 SM00382 ATPases associated with a variety of cellular activities XM56_09685 SM00354 helix_turn _helix lactose operon repressor XM56_09705 SM00479 XM56_09705 XM56_09755 SM00347 helix_turn_helix multiple antibiotic resistance protein XM56_09780 SM00363 S4 RNA-binding domain XM56_09830 SM00382 ATPases associated with a variety of cellular activities XM56_09835 SM00382 ATPases associated with a variety of cellular activities XM56_09865 SM00382 ATPases associated with a variety of cellular activities XM56_09900 SM00953 XM56_09900 XM56_09910 SM00091 PAS domain XM56_09910 SM00382 ATPases associated with a variety of cellular activities XM56_09920 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XM56_09945 SM00148 Phospholipase C, catalytic domain (part); domain X XM56_09950 SM00890 Domain of unknown function XM56_09995 SM00382 ATPases associated with a variety of cellular activities XM56_09995 SM00487 DEAD-like helicases superfamily XM56_09995 SM00490 helicase superfamily c-terminal domain XM56_09995 SM00847 Helicase associated domain (HA2) Add an annotation XM56_10005 SM00530 Helix-turn-helix XRE-family like proteins XM56_10010 SM00020 Trypsin-like serine protease XM56_10025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_10025 SM00387 Histidine kinase-like ATPases XM56_10025 SM00388 His Kinase A (phosphoacceptor) domain XM56_10030 SM00448 cheY-homologous receiver domain XM56_10030 SM00862 Transcriptional regulatory protein, C terminal XM56_10055 SM01002 Alanine dehydrogenase/PNT, C-terminal domain XM56_10055 SM01003 Alanine dehydrogenase/PNT, N-terminal domain XM56_10070 SM00100 Cyclic nucleotide-monophosphate binding domain XM56_10070 SM00419 helix_turn_helix, cAMP Regulatory protein XM56_10090 SM00871 Bacterial transcription activator, effector binding domain XM56_10095 SM00822 XM56_10095 XM56_10100 SM00098 Alkaline phosphatase homologues XM56_10145 SM00644 XM56_10145 XM56_10185 SM00354 helix_turn _helix lactose operon repressor XM56_10200 SM00857 Resolvase, N terminal domain XM56_10230 SM00062 Bacterial periplasmic substrate-binding proteins XM56_10245 SM00344 helix_turn_helix ASNC type XM56_10255 SM00347 helix_turn_helix multiple antibiotic resistance protein XM56_10295 SM00421 helix_turn_helix, Lux Regulon XM56_10465 SM00421 helix_turn_helix, Lux Regulon XM56_10490 SM00354 helix_turn _helix lactose operon repressor XM56_10520 SM00342 helix_turn_helix, arabinose operon control protein XM56_10530 SM00382 ATPases associated with a variety of cellular activities XM56_10555 SM00382 ATPases associated with a variety of cellular activities XM56_10600 SM00342 helix_turn_helix, arabinose operon control protein XM56_10610 SM00900 XM56_10610 XM56_10620 SM00478 endonuclease III XM56_10620 SM00525 XM56_10620 XM56_10645 SM00357 Cold shock protein domain XM56_10645 SM00955 XM56_10645 XM56_10665 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_10665 SM01134 XM56_10665 XM56_10675 SM01007 Class II Aldolase and Adducin N-terminal domain XM56_10695 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family XM56_10710 SM00530 Helix-turn-helix XRE-family like proteins XM56_10720 SM00028 Tetratricopeptide repeats XM56_10730 SM00014 Acid phosphatase homologues XM56_10760 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XM56_10760 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XM56_10760 SM00493 XM56_10760 XM56_10775 SM00822 XM56_10775 XM56_10790 SM00363 S4 RNA-binding domain XM56_10800 SM00481 DNA polymerase alpha chain like domain XM56_10835 SM00749 bacterial OsmY and nodulation domain XM56_10885 SM00052 Putative diguanylate phosphodiesterase XM56_10890 SM00155 Phospholipase D. Active site motifs. XM56_10900 SM00382 ATPases associated with a variety of cellular activities XM56_10905 SM00382 ATPases associated with a variety of cellular activities XM56_10950 SM00528 Domain in histone-like proteins of HNS family XM56_10955 SM00984 UDP binding domain XM56_10960 SM00448 cheY-homologous receiver domain XM56_11010 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain XM56_11010 SM00437 Bacterial DNA topoisomerase I DNA-binding domain XM56_11010 SM00493 XM56_11010 XM56_11030 SM00870 XM56_11030 XM56_11055 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain XM56_11070 SM00763 PrkA AAA domain XM56_11100 SM00052 Putative diguanylate phosphodiesterase XM56_11100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XM56_11100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_11100 SM00091 PAS domain XM56_11100 SM00267 diguanylate cyclase XM56_11110 SM01005 Alanine racemase, C-terminal domain XM56_11125 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_11165 SM00836 DALR anticodon binding domain XM56_11165 SM01016 Arginyl tRNA synthetase N terminal dom XM56_11245 SM00382 ATPases associated with a variety of cellular activities XM56_11295 SM01007 Class II Aldolase and Adducin N-terminal domain XM56_11305 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_11305 SM01134 XM56_11305 XM56_11310 SM00387 Histidine kinase-like ATPases XM56_11315 SM00448 cheY-homologous receiver domain XM56_11375 SM00421 helix_turn_helix, Lux Regulon XM56_11450 SM00479 XM56_11450 XM56_11465 SM01022 XM56_11465 XM56_11475 SM00487 DEAD-like helicases superfamily XM56_11475 SM00490 helicase superfamily c-terminal domain XM56_11510 SM01091 Transporter associated domain XM56_11545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_11545 SM00091 PAS domain XM56_11545 SM00267 diguanylate cyclase XM56_11570 SM00357 Cold shock protein domain XM56_11620 SM00342 helix_turn_helix, arabinose operon control protein XM56_11640 SM00382 ATPases associated with a variety of cellular activities XM56_11645 SM00090 RIO-like kinase XM56_11660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_11660 SM00091 PAS domain XM56_11660 SM00267 diguanylate cyclase XM56_11680 SM00342 helix_turn_helix, arabinose operon control protein XM56_11730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_11730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_11740 SM00354 helix_turn _helix lactose operon repressor XM56_11745 SM00640 Glycosyl hydrolases family 32 XM56_11795 SM01329 XM56_11795 XM56_11830 SM00448 cheY-homologous receiver domain XM56_11830 SM00862 Transcriptional regulatory protein, C terminal XM56_11835 SM00387 Histidine kinase-like ATPases XM56_11835 SM00388 His Kinase A (phosphoacceptor) domain XM56_11840 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. XM56_11865 SM00382 ATPases associated with a variety of cellular activities XM56_11875 SM00487 DEAD-like helicases superfamily XM56_11875 SM00490 helicase superfamily c-terminal domain XM56_11875 SM00982 XM56_11875 XM56_11875 SM01058 CarD-like/TRCF domain XM56_11940 SM00382 ATPases associated with a variety of cellular activities XM56_11980 SM00825 Beta-ketoacyl synthase XM56_11990 SM00822 XM56_11990 XM56_11995 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. XM56_12025 SM00363 S4 RNA-binding domain XM56_12030 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_12060 SM00421 helix_turn_helix, Lux Regulon XM56_12070 SM00450 Rhodanese Homology Domain XM56_12080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_12095 SM00387 Histidine kinase-like ATPases XM56_12100 SM00421 helix_turn_helix, Lux Regulon XM56_12100 SM00448 cheY-homologous receiver domain XM56_12175 SM01091 Transporter associated domain XM56_12190 SM00421 helix_turn_helix, Lux Regulon XM56_12260 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase XM56_12265 SM00992 Hemimethylated DNA-binding protein YccV like XM56_12270 SM00881 CoA binding domain XM56_12280 SM00851 MGS-like domain XM56_12340 SM00825 Beta-ketoacyl synthase XM56_12360 SM00382 ATPases associated with a variety of cellular activities XM56_12365 SM00981 XM56_12365 XM56_12415 SM00052 Putative diguanylate phosphodiesterase XM56_12420 SM00849 Metallo-beta-lactamase superfamily XM56_12475 SM00357 Cold shock protein domain XM56_12480 SM00357 Cold shock protein domain XM56_12485 SM01150 XM56_12485 XM56_12495 SM00382 ATPases associated with a variety of cellular activities XM56_12500 SM00849 Metallo-beta-lactamase superfamily XM56_12505 SM00411 bacterial (prokaryotic) histone like domain XM56_12510 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_12535 SM00870 XM56_12535 XM56_12575 SM00382 ATPases associated with a variety of cellular activities XM56_12585 SM00843 XM56_12585 XM56_12590 SM00344 helix_turn_helix ASNC type XM56_12600 SM00382 ATPases associated with a variety of cellular activities XM56_12605 SM00382 ATPases associated with a variety of cellular activities XM56_12615 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_12620 SM00382 ATPases associated with a variety of cellular activities XM56_12620 SM01086 C-terminal, D2-small domain, of ClpB protein XM56_12630 SM00357 Cold shock protein domain XM56_12635 SM00382 ATPases associated with a variety of cellular activities XM56_12700 SM00382 ATPases associated with a variety of cellular activities XM56_12705 SM00062 Bacterial periplasmic substrate-binding proteins XM56_12705 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM56_12720 SM00062 Bacterial periplasmic substrate-binding proteins XM56_12720 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. XM56_12745 SM00382 ATPases associated with a variety of cellular activities XM56_12780 SM00014 Acid phosphatase homologues XM56_12785 SM01133 XM56_12785 XM56_12790 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_12790 SM01134 XM56_12790 XM56_12810 SM00936 Penicillin-binding protein 5, C-terminal domain XM56_12815 SM00116 Domain in cystathionine beta-synthase and other proteins. XM56_12830 SM00382 ATPases associated with a variety of cellular activities XM56_12830 SM00930 XM56_12830 XM56_12860 SM00382 ATPases associated with a variety of cellular activities XM56_12895 SM00518 AP endonuclease family 2 XM56_12920 SM00862 Transcriptional regulatory protein, C terminal XM56_12965 SM00841 Elongation factor P, C-terminal XM56_12965 SM01185 XM56_12965 XM56_12985 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_12985 SM00895 XM56_12985 XM56_12995 SM00833 Cobalamin synthesis protein cobW C-terminal domain XM56_13000 SM00014 Acid phosphatase homologues XM56_13015 SM00052 Putative diguanylate phosphodiesterase XM56_13035 SM00382 ATPases associated with a variety of cellular activities XM56_13050 SM00363 S4 RNA-binding domain XM56_13055 SM00487 DEAD-like helicases superfamily XM56_13055 SM00490 helicase superfamily c-terminal domain XM56_13125 SM01057 Eukaryotic-type carbonic anhydrase XM56_13165 SM00530 Helix-turn-helix XRE-family like proteins XM56_13180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_13180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_13235 SM00387 Histidine kinase-like ATPases XM56_13235 SM00388 His Kinase A (phosphoacceptor) domain XM56_13240 SM00421 helix_turn_helix, Lux Regulon XM56_13240 SM00448 cheY-homologous receiver domain XM56_13245 SM00387 Histidine kinase-like ATPases XM56_13245 SM00388 His Kinase A (phosphoacceptor) domain XM56_13245 SM00448 cheY-homologous receiver domain XM56_13255 SM00434 DNA Topoisomerase IV XM56_13295 SM00852 Probable molybdopterin binding domain XM56_13310 SM01060 XM56_13310 XM56_13320 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain XM56_13440 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_13440 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region XM56_13445 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region XM56_13480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_13520 SM00354 helix_turn _helix lactose operon repressor XM56_13555 SM00052 Putative diguanylate phosphodiesterase XM56_13570 SM00382 ATPases associated with a variety of cellular activities XM56_13585 SM00062 Bacterial periplasmic substrate-binding proteins XM56_13630 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM56_13640 SM00342 helix_turn_helix, arabinose operon control protein XM56_13655 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_13695 SM00354 helix_turn _helix lactose operon repressor XM56_13730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_13730 SM00091 PAS domain XM56_13730 SM00267 diguanylate cyclase XM56_13735 SM00825 Beta-ketoacyl synthase XM56_13775 SM00463 Small MutS-related domain XM56_13850 SM00382 ATPases associated with a variety of cellular activities XM56_13890 SM00778 Zinc-binding domain of primase-helicase XM56_13960 SM00354 helix_turn _helix lactose operon repressor XM56_13965 SM00867 YceI-like domain XM56_13995 SM00382 ATPases associated with a variety of cellular activities XM56_14050 SM00382 ATPases associated with a variety of cellular activities XM56_14090 SM00387 Histidine kinase-like ATPases XM56_14095 SM00448 cheY-homologous receiver domain XM56_14095 SM00850 LytTr DNA-binding domain XM56_14195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 XM56_14195 SM00292 breast cancer carboxy-terminal domain XM56_14195 SM00532 Ligase N family XM56_14200 SM00771 ZipA, C-terminal domain (FtsZ-binding) XM56_14230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_14230 SM00387 Histidine kinase-like ATPases XM56_14230 SM00388 His Kinase A (phosphoacceptor) domain XM56_14235 SM00448 cheY-homologous receiver domain XM56_14235 SM00862 Transcriptional regulatory protein, C terminal XM56_14245 SM00382 ATPases associated with a variety of cellular activities XM56_14255 SM00382 ATPases associated with a variety of cellular activities XM56_14300 SM01130 XM56_14300 XM56_14350 SM00919 Malic enzyme, NAD binding domain XM56_14350 SM01274 XM56_14350 XM56_14370 SM00926 Molybdopterin oxidoreductase Fe4S4 domain XM56_14385 SM00421 helix_turn_helix, Lux Regulon XM56_14385 SM00448 cheY-homologous receiver domain XM56_14505 SM01130 XM56_14505 XM56_14570 SM00382 ATPases associated with a variety of cellular activities XM56_14600 SM00924 MgtE intracellular N domain XM56_14605 SM00052 Putative diguanylate phosphodiesterase XM56_14605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) XM56_14605 SM00091 PAS domain XM56_14605 SM00267 diguanylate cyclase XM56_14635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_14635 SM00387 Histidine kinase-like ATPases XM56_14635 SM00388 His Kinase A (phosphoacceptor) domain XM56_14640 SM00448 cheY-homologous receiver domain XM56_14640 SM00862 Transcriptional regulatory protein, C terminal XM56_14655 SM00046 Diacylglycerol kinase catalytic domain (presumed) XM56_14685 SM00420 helix_turn_helix, Deoxyribose operon repressor XM56_14685 SM01134 XM56_14685 XM56_14690 SM00116 Domain in cystathionine beta-synthase and other proteins. XM56_14745 SM00116 Domain in cystathionine beta-synthase and other proteins. XM56_14745 SM01240 XM56_14745 XM56_14770 SM00382 ATPases associated with a variety of cellular activities XM56_14780 SM00564 beta-propeller repeat XM56_14800 SM00530 Helix-turn-helix XRE-family like proteins XM56_14805 SM00028 Tetratricopeptide repeats XM56_14815 SM00562 XM56_14815 XM56_14820 SM00247 Beta/gamma crystallins XM56_14830 SM01359 XM56_14830 XM56_14830 SM01360 XM56_14830 XM56_14835 SM00869 Autotransporter beta-domain XM56_14865 SM00271 DnaJ molecular chaperone homology domain XM56_14960 SM00938 Nitrogen regulatory protein P-II XM56_14970 SM00382 ATPases associated with a variety of cellular activities XM56_14970 SM00448 cheY-homologous receiver domain XM56_14980 SM00387 Histidine kinase-like ATPases XM56_14980 SM00388 His Kinase A (phosphoacceptor) domain XM56_14990 SM01211 XM56_14990 XM56_14995 SM00062 Bacterial periplasmic substrate-binding proteins XM56_15055 SM00358 Double-stranded RNA binding motif XM56_15055 SM00535 Ribonuclease III family XM56_15105 SM00487 DEAD-like helicases superfamily XM56_15105 SM00490 helicase superfamily c-terminal domain XM56_15120 SM00248 ankyrin repeats XM56_15140 SM00986 Uracil DNA glycosylase superfamily XM56_15140 SM00987 UreE urease accessory protein, C-terminal domain XM56_15225 SM00382 ATPases associated with a variety of cellular activities XM56_15245 SM00342 helix_turn_helix, arabinose operon control protein XM56_15330 SM00988 UreE urease accessory protein, N-terminal domain XM56_15350 SM00382 ATPases associated with a variety of cellular activities XM56_15355 SM00382 ATPases associated with a variety of cellular activities XM56_15385 SM00450 Rhodanese Homology Domain XM56_15400 SM00357 Cold shock protein domain XM56_15425 SM00342 helix_turn_helix, arabinose operon control protein XM56_15450 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_15480 SM00382 ATPases associated with a variety of cellular activities XM56_15500 SM00479 XM56_15500 XM56_15515 SM00849 Metallo-beta-lactamase superfamily XM56_15520 SM00257 Lysin motif XM56_15590 SM00382 ATPases associated with a variety of cellular activities XM56_15590 SM00930 XM56_15590 XM56_15630 SM01322 XM56_15630 XM56_15650 SM00977 TilS substrate C-terminal domain XM56_15670 SM00481 DNA polymerase alpha chain like domain XM56_15700 SM00935 Outer membrane protein (OmpH-like) XM56_15710 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM56_15755 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_15800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XM56_15800 SM00475 5'-3' exonuclease XM56_15845 SM00925 MltA specific insert domain XM56_15855 SM00646 XM56_15855 XM56_15920 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. XM56_15935 SM00927 DNA mismatch repair enzyme MutH XM56_15955 SM00563 Phosphate acyltransferases XM56_15970 SM00354 helix_turn _helix lactose operon repressor XM56_15995 SM00849 Metallo-beta-lactamase superfamily XM56_16015 SM00862 Transcriptional regulatory protein, C terminal XM56_16065 SM00382 ATPases associated with a variety of cellular activities XM56_16085 SM00947 Carbonic anhydrase XM56_16095 SM00822 XM56_16095 XM56_16105 SM00271 DnaJ molecular chaperone homology domain XM56_16115 SM00354 helix_turn _helix lactose operon repressor XM56_16135 SM00344 helix_turn_helix ASNC type XM56_16145 SM00091 PAS domain XM56_16145 SM00267 diguanylate cyclase XM56_16170 SM00530 Helix-turn-helix XRE-family like proteins XM56_16180 SM00530 Helix-turn-helix XRE-family like proteins XM56_16190 SM00530 Helix-turn-helix XRE-family like proteins XM56_16205 SM00857 Resolvase, N terminal domain XM56_16225 SM00382 ATPases associated with a variety of cellular activities XM56_16245 SM00937 XM56_16245 XM56_16275 SM00387 Histidine kinase-like ATPases XM56_16275 SM00388 His Kinase A (phosphoacceptor) domain XM56_16280 SM00448 cheY-homologous receiver domain XM56_16280 SM00862 Transcriptional regulatory protein, C terminal XM56_16315 SM00822 XM56_16315 XM56_16350 SM01011 Aminopeptidase P, N-terminal domain XM56_16370 SM01192 XM56_16370 XM56_16370 SM01193 XM56_16370 XM56_16385 SM00954 Region found in RelA / SpoT proteins XM56_16395 SM00073 Histidine Phosphotransfer domain XM56_16395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_16395 SM00387 Histidine kinase-like ATPases XM56_16395 SM00388 His Kinase A (phosphoacceptor) domain XM56_16395 SM00448 cheY-homologous receiver domain XM56_16400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. XM56_16405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_16455 SM00382 ATPases associated with a variety of cellular activities XM56_16465 SM00487 DEAD-like helicases superfamily XM56_16465 SM00490 helicase superfamily c-terminal domain XM56_16465 SM00847 Helicase associated domain (HA2) Add an annotation XM56_16525 SM00382 ATPases associated with a variety of cellular activities XM56_16530 SM00947 Carbonic anhydrase XM56_16585 SM00342 helix_turn_helix, arabinose operon control protein XM56_16610 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_16610 SM00895 XM56_16610 XM56_16625 SM00644 XM56_16625 XM56_16650 SM01240 XM56_16650 XM56_16675 SM00957 SecA DEAD-like domain XM56_16675 SM00958 SecA preprotein cross-linking domain XM56_16695 SM00864 Tubulin/FtsZ family, GTPase domain XM56_16695 SM00865 Tubulin/FtsZ family, C-terminal domain XM56_16700 SM00842 Cell division protein FtsA XM56_16780 SM00354 helix_turn _helix lactose operon repressor XM56_16805 SM00917 LeuA allosteric (dimerisation) domain XM56_16810 SM01329 XM56_16810 XM56_16885 SM00382 ATPases associated with a variety of cellular activities XM56_16895 SM00486 DNA polymerase type-B family XM56_16900 SM00487 DEAD-like helicases superfamily XM56_16900 SM00490 helicase superfamily c-terminal domain XM56_16905 SM00634 Bacterial Ig-like domain (group 1) XM56_16915 SM00271 DnaJ molecular chaperone homology domain XM56_16935 SM00650 Ribosomal RNA adenine dimethylases XM56_16970 SM00851 MGS-like domain XM56_16970 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain XM56_16975 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain XM56_17005 SM00904 Riboflavin kinase XM56_17030 SM00271 DnaJ molecular chaperone homology domain XM56_17045 SM00247 Beta/gamma crystallins XM56_17055 SM00852 Probable molybdopterin binding domain XM56_17095 SM00448 cheY-homologous receiver domain XM56_17095 SM00862 Transcriptional regulatory protein, C terminal XM56_17105 SM00342 helix_turn_helix, arabinose operon control protein XM56_17105 SM00871 Bacterial transcription activator, effector binding domain XM56_17110 SM00855 Phosphoglycerate mutase family XM56_17130 SM00831 Cation transporter/ATPase, N-terminus XM56_17140 SM00267 diguanylate cyclase XM56_17150 SM00382 ATPases associated with a variety of cellular activities XM56_17165 SM00829 Enoylreductase XM56_17170 SM00530 Helix-turn-helix XRE-family like proteins XM56_17175 SM00382 ATPases associated with a variety of cellular activities XM56_17200 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain XM56_17205 SM01133 XM56_17205 XM56_17225 SM00749 bacterial OsmY and nodulation domain XM56_17270 SM00267 diguanylate cyclase XM56_17300 SM00640 Glycosyl hydrolases family 32 XM56_17305 SM00354 helix_turn _helix lactose operon repressor XM56_17310 SM00091 PAS domain XM56_17355 SM01120 XM56_17355 XM56_17410 SM00382 ATPases associated with a variety of cellular activities XM56_17430 SM01133 XM56_17430 XM56_17480 SM00421 helix_turn_helix, Lux Regulon XM56_17500 SM00382 ATPases associated with a variety of cellular activities XM56_17520 SM00530 Helix-turn-helix XRE-family like proteins XM56_17610 SM00382 ATPases associated with a variety of cellular activities XM56_17615 SM00382 ATPases associated with a variety of cellular activities XM56_17645 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_17645 SM00866 XM56_17645 XM56_17670 SM00382 ATPases associated with a variety of cellular activities XM56_17675 SM00382 ATPases associated with a variety of cellular activities XM56_17685 SM00072 Guanylate kinase homologues. XM56_17695 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM56_17720 SM00382 ATPases associated with a variety of cellular activities XM56_17810 SM00487 DEAD-like helicases superfamily XM56_17810 SM00490 helicase superfamily c-terminal domain XM56_17815 SM00028 Tetratricopeptide repeats XM56_17820 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_17820 SM00322 K homology RNA-binding domain XM56_17825 SM01387 XM56_17825 XM56_17840 SM00173 Ras subfamily of RAS small GTPases XM56_17845 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_17845 SM00322 K homology RNA-binding domain XM56_17880 SM00382 ATPases associated with a variety of cellular activities XM56_17890 SM01103 XM56_17890 XM56_17905 SM00448 cheY-homologous receiver domain XM56_17905 SM00862 Transcriptional regulatory protein, C terminal XM56_17910 SM00387 Histidine kinase-like ATPases XM56_17910 SM00388 His Kinase A (phosphoacceptor) domain XM56_17975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_17975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_18005 SM01091 Transporter associated domain XM56_18090 SM00967 RNA 2'-O ribose methyltransferase substrate binding XM56_18095 SM00316 Ribosomal protein S1-like RNA-binding domain XM56_18095 SM00357 Cold shock protein domain XM56_18095 SM00955 XM56_18095 XM56_18105 SM00788 Adenylosuccinate synthetase XM56_18115 SM00244 prohibitin homologues XM56_18120 SM00244 prohibitin homologues XM56_18140 SM00853 MutL C terminal dimerisation domain XM56_18140 SM01340 XM56_18140 XM56_18145 SM00257 Lysin motif XM56_18145 SM00646 XM56_18145 XM56_18170 SM00479 XM56_18170 XM56_18230 SM00841 Elongation factor P, C-terminal XM56_18230 SM01185 XM56_18230 XM56_18255 SM00883 Chaperonin 10 Kd subunit XM56_18320 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_18360 SM00382 ATPases associated with a variety of cellular activities XM56_18365 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_18395 SM00382 ATPases associated with a variety of cellular activities XM56_18400 SM00965 Secretin and TonB N terminus short domain XM56_18465 SM00382 ATPases associated with a variety of cellular activities XM56_18515 SM00342 helix_turn_helix, arabinose operon control protein XM56_18580 SM00387 Histidine kinase-like ATPases XM56_18580 SM00388 His Kinase A (phosphoacceptor) domain XM56_18580 SM00448 cheY-homologous receiver domain XM56_18585 SM00421 helix_turn_helix, Lux Regulon XM56_18585 SM00448 cheY-homologous receiver domain XM56_18645 SM00798 AICARFT/IMPCHase bienzyme XM56_18645 SM00851 MGS-like domain XM56_18650 SM01209 XM56_18650 XM56_18650 SM01210 XM56_18650 XM56_18660 SM00411 bacterial (prokaryotic) histone like domain XM56_18715 SM00876 Biotin and Thiamin Synthesis associated domain XM56_18725 SM00663 RNA polymerase I subunit A N-terminus XM56_18750 SM00649 Ribosomal protein L11/L12 XM56_18755 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XM56_18755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. XM56_18880 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. XM56_18885 SM01004 Delta-aminolevulinic acid dehydratase XM56_18985 SM00382 ATPases associated with a variety of cellular activities XM56_19035 SM00382 ATPases associated with a variety of cellular activities XM56_19040 SM00382 ATPases associated with a variety of cellular activities XM56_19085 SM00382 ATPases associated with a variety of cellular activities XM56_19090 SM00382 ATPases associated with a variety of cellular activities XM56_19090 SM00962 SRP54-type protein, GTPase domain XM56_19090 SM00963 SRP54-type protein, helical bundle domain XM56_19185 SM00341 Helicase and RNase D C-terminal XM56_19185 SM00487 DEAD-like helicases superfamily XM56_19185 SM00490 helicase superfamily c-terminal domain XM56_19185 SM00956 XM56_19185 XM56_19255 SM01219 XM56_19255 XM56_19355 SM00984 UDP binding domain XM56_19380 SM00357 Cold shock protein domain XM56_19380 SM00382 ATPases associated with a variety of cellular activities XM56_19380 SM00959 Rho termination factor, N-terminal domain XM56_19390 SM00487 DEAD-like helicases superfamily XM56_19390 SM00490 helicase superfamily c-terminal domain XM56_19400 SM00060 Fibronectin type 3 domain XM56_19510 SM00382 ATPases associated with a variety of cellular activities XM56_19535 SM00382 ATPases associated with a variety of cellular activities XM56_19635 SM00382 ATPases associated with a variety of cellular activities XM56_19670 SM00859 Semialdehyde dehydrogenase, NAD binding domain XM56_19710 SM00487 DEAD-like helicases superfamily XM56_19710 SM00490 helicase superfamily c-terminal domain XM56_19715 SM00354 helix_turn _helix lactose operon repressor XM56_19730 SM00382 ATPases associated with a variety of cellular activities XM56_19730 SM01086 C-terminal, D2-small domain, of ClpB protein XM56_19825 SM00448 cheY-homologous receiver domain XM56_19825 SM00862 Transcriptional regulatory protein, C terminal XM56_19830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_19830 SM00387 Histidine kinase-like ATPases XM56_19830 SM00388 His Kinase A (phosphoacceptor) domain XM56_19835 SM00342 helix_turn_helix, arabinose operon control protein XM56_19845 SM00971 Serine acetyltransferase, N-terminal XM56_19865 SM00450 Rhodanese Homology Domain XM56_19900 SM00829 Enoylreductase XM56_19940 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain XM56_19940 SM01232 XM56_19940 XM56_19990 SM00849 Metallo-beta-lactamase superfamily XM56_20000 SM00052 Putative diguanylate phosphodiesterase XM56_20000 SM00091 PAS domain XM56_20000 SM00267 diguanylate cyclase XM56_20025 SM00532 Ligase N family XM56_20030 SM00072 Guanylate kinase homologues. XM56_20035 SM01409 XM56_20035 XM56_20040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. XM56_20040 SM00954 Region found in RelA / SpoT proteins XM56_20050 SM00487 DEAD-like helicases superfamily XM56_20050 SM00490 helicase superfamily c-terminal domain XM56_20075 SM00421 helix_turn_helix, Lux Regulon XM56_20080 SM00421 helix_turn_helix, Lux Regulon XM56_20115 SM01230 XM56_20115 XM56_20125 SM00091 PAS domain XM56_20125 SM00387 Histidine kinase-like ATPases XM56_20125 SM00388 His Kinase A (phosphoacceptor) domain XM56_20130 SM00382 ATPases associated with a variety of cellular activities XM56_20130 SM00448 cheY-homologous receiver domain XM56_20135 SM00729 Elongator protein 3, MiaB family, Radical SAM XM56_20150 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs XM56_20150 SM00474 3'-5' exonuclease XM56_20150 SM00475 5'-3' exonuclease XM56_20150 SM00482 DNA polymerase A domain XM56_20215 SM00345 helix_turn_helix gluconate operon transcriptional repressor XM56_20215 SM00895 XM56_20215 XM56_20225 SM00354 helix_turn _helix lactose operon repressor XM56_20245 SM00382 ATPases associated with a variety of cellular activities XM56_20260 SM00382 ATPases associated with a variety of cellular activities XM56_20265 SM00327 von Willebrand factor (vWF) type A domain XM56_20280 SM00344 helix_turn_helix ASNC type XM56_20290 SM01228 XM56_20290 XM56_20335 SM00382 ATPases associated with a variety of cellular activities XM56_20375 SM00382 ATPases associated with a variety of cellular activities XM56_20390 SM00062 Bacterial periplasmic substrate-binding proteins XM56_20420 SM00421 helix_turn_helix, Lux Regulon XM56_20420 SM00448 cheY-homologous receiver domain XM56_20425 SM00387 Histidine kinase-like ATPases XM56_20425 SM00388 His Kinase A (phosphoacceptor) domain XM56_20435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). XM56_20435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain XM56_20445 SM00382 ATPases associated with a variety of cellular activities XM56_20445 SM00930 XM56_20445 XM56_20470 SM01234 XM56_20470 XM56_20510 SM00220 Serine/Threonine protein kinases, catalytic domain XM56_20570 SM00364 Leucine-rich repeats, bacterial type XM56_20645 SM00382 ATPases associated with a variety of cellular activities XM56_20690 SM00342 helix_turn_helix, arabinose operon control protein XM56_20765 SM00194 Protein tyrosine phosphatase, catalytic domain XM56_20765 SM00404 Protein tyrosine phosphatase, catalytic domain motif XM56_20805 SM00470 ParB-like nuclease domain XM56_20875 SM00857 Resolvase, N terminal domain XM56_20890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor XM56_20935 SM00155 Phospholipase D. Active site motifs.