locus-tag class description LC20_00001 PF11638 DnaA N-terminal domain LC20_00001 PF08299 Bacterial dnaA protein helix-turn-helix LC20_00001 PF00308 Bacterial dnaA protein LC20_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain LC20_00002 PF02767 DNA polymerase III beta subunit, central domain LC20_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain LC20_00004 PF02463 RecF/RecN/SMC N terminal domain LC20_00005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00005 PF00986 DNA gyrase B subunit, carboxyl terminus LC20_00005 PF00204 DNA gyrase B LC20_00005 PF01751 Toprim domain LC20_00005 PF18053 DNA gyrase B subunit insert domain LC20_00008 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_00008 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_00009 PF00577 Outer membrane usher protein LC20_00009 PF13954 PapC N-terminal domain LC20_00009 PF13953 PapC C-terminal domain LC20_00012 PF02423 Ornithine cyclodeaminase/mu-crystallin family LC20_00013 PF00291 Pyridoxal-phosphate dependent enzyme LC20_00014 PF13309 HTH domain LC20_00014 PF08348 YheO-like PAS domain LC20_00015 PF07676 WD40-like Beta Propeller Repeat LC20_00015 PF12566 Protein of unknown function (DUF3748) LC20_00016 PF07119 Protein of unknown function (DUF1375) LC20_00017 PF00011 Hsp20/alpha crystallin family LC20_00018 PF00011 Hsp20/alpha crystallin family LC20_00019 PF02080 TrkA-C domain LC20_00019 PF06826 Predicted Permease Membrane Region LC20_00021 PF00155 Aminotransferase class I and II LC20_00023 PF00128 Alpha amylase, catalytic domain LC20_00024 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LC20_00024 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_00025 PF07690 Major Facilitator Superfamily LC20_00029 PF00583 Acetyltransferase (GNAT) family LC20_00030 PF03352 Methyladenine glycosylase LC20_00032 PF02091 Glycyl-tRNA synthetase alpha subunit LC20_00033 PF05746 DALR anticodon binding domain LC20_00033 PF02092 Glycyl-tRNA synthetase beta subunit LC20_00034 PF11254 Protein of unknown function (DUF3053) LC20_00035 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LC20_00035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LC20_00035 PF02378 Phosphotransferase system, EIIC LC20_00036 PF01232 Mannitol dehydrogenase Rossmann domain LC20_00036 PF08125 Mannitol dehydrogenase C-terminal domain LC20_00037 PF05068 Mannitol repressor LC20_00039 PF00155 Aminotransferase class I and II LC20_00039 PF00392 Bacterial regulatory proteins, gntR family LC20_00040 PF10928 Protein of unknown function (DUF2810) LC20_00041 PF03475 3-alpha domain LC20_00041 PF03473 MOSC domain LC20_00042 PF00672 HAMP domain LC20_00042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_00042 PF02203 Tar ligand binding domain homologue LC20_00043 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LC20_00043 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LC20_00044 PF02634 FdhD/NarQ family LC20_00045 PF00384 Molybdopterin oxidoreductase LC20_00045 PF01568 Molydopterin dinucleotide binding domain LC20_00045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_00046 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_00046 PF00384 Molybdopterin oxidoreductase LC20_00046 PF01568 Molydopterin dinucleotide binding domain LC20_00047 PF13247 4Fe-4S dicluster domain LC20_00047 PF09163 Formate dehydrogenase N, transmembrane LC20_00048 PF01292 Prokaryotic cytochrome b561 LC20_00049 PF04216 Protein involved in formate dehydrogenase formation LC20_00050 PF03841 L-seryl-tRNA selenium transferase LC20_00050 PF12390 Selenocysteine synthase N terminal LC20_00051 PF03144 Elongation factor Tu domain 2 LC20_00051 PF00009 Elongation factor Tu GTP binding domain LC20_00051 PF09107 Elongation factor SelB, winged helix LC20_00051 PF09106 Elongation factor SelB, winged helix LC20_00052 PF07690 Major Facilitator Superfamily LC20_00053 PF01757 Acyltransferase family LC20_00055 PF00857 Isochorismatase family LC20_00056 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_00056 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_00057 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_00057 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_00059 PF13407 Periplasmic binding protein domain LC20_00060 PF00005 ABC transporter LC20_00061 PF02653 Branched-chain amino acid transport system / permease component LC20_00062 PF12833 Helix-turn-helix domain LC20_00064 PF14659 Phage integrase, N-terminal SAM-like domain LC20_00064 PF00589 Phage integrase family LC20_00064 PF13356 Arm DNA-binding domain LC20_00065 PF01420 Type I restriction modification DNA specificity domain LC20_00070 PF08463 EcoEI R protein C-terminal LC20_00070 PF04851 Type III restriction enzyme, res subunit LC20_00070 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LC20_00070 PF00271 Helicase conserved C-terminal domain LC20_00071 PF13676 TIR domain LC20_00080 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LC20_00080 PF01348 Type II intron maturase LC20_00082 PF04002 RadC-like JAB domain LC20_00083 PF06174 Protein of unknown function (DUF987) LC20_00084 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LC20_00085 PF06755 CbtA_toxin of type IV toxin-antitoxin system LC20_00093 PF03960 ArsC family LC20_00095 PF07690 Major Facilitator Superfamily LC20_00096 PF00294 pfkB family carbohydrate kinase LC20_00098 PF00356 Bacterial regulatory proteins, lacI family LC20_00100 PF01175 Urocanase Rossmann-like domain LC20_00100 PF17392 Urocanase C-terminal domain LC20_00100 PF17391 Urocanase N-terminal domain LC20_00101 PF00221 Aromatic amino acid lyase LC20_00102 PF00324 Amino acid permease LC20_00104 PF01593 Flavin containing amine oxidoreductase LC20_00106 PF00483 Nucleotidyl transferase LC20_00107 PF00535 Glycosyl transferase family 2 LC20_00108 PF01370 NAD dependent epimerase/dehydratase family LC20_00108 PF08338 Domain of unknown function (DUF1731) LC20_00109 PF16363 GDP-mannose 4,6 dehydratase LC20_00110 PF12146 Serine aminopeptidase, S33 LC20_00111 PF02566 OsmC-like protein LC20_00112 PF08019 Phosphoethanolamine transferase EptA/EptB LC20_00112 PF00884 Sulfatase LC20_00113 PF00196 Bacterial regulatory proteins, luxR family LC20_00113 PF00072 Response regulator receiver domain LC20_00114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00114 PF07730 Histidine kinase LC20_00114 PF05231 MASE1 LC20_00115 PF07690 Major Facilitator Superfamily LC20_00117 PF13332 Hemagglutinin repeat LC20_00117 PF04829 Pre-toxin domain with VENN motif LC20_00117 PF05860 haemagglutination activity domain LC20_00118 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LC20_00118 PF17287 POTRA domain LC20_00118 PF08479 POTRA domain, ShlB-type LC20_00122 PF04829 Pre-toxin domain with VENN motif LC20_00122 PF05860 haemagglutination activity domain LC20_00122 PF13018 Extended Signal Peptide of Type V secretion system LC20_00122 PF13332 Hemagglutinin repeat LC20_00125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_00126 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00127 PF12911 N-terminal TM domain of oligopeptide transport permease C LC20_00127 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00128 PF00005 ABC transporter LC20_00128 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_00129 PF00005 ABC transporter LC20_00129 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_00134 PF11658 Cellulose biosynthesis protein BcsG LC20_00137 PF11120 Cellulose biosynthesis protein BcsF LC20_00138 PF10995 Cellulose biosynthesis GIL LC20_00140 PF06564 Cellulose biosynthesis protein BcsQ LC20_00142 PF03552 Cellulose synthase LC20_00142 PF07238 PilZ domain LC20_00142 PF00535 Glycosyl transferase family 2 LC20_00143 PF03170 Bacterial cellulose synthase subunit LC20_00144 PF01270 Glycosyl hydrolases family 8 LC20_00145 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) LC20_00146 PF17154 Gammaproteobacterial periplasmic sensor domain LC20_00146 PF00563 EAL domain LC20_00146 PF00990 Diguanylate cyclase, GGDEF domain LC20_00146 PF00672 HAMP domain LC20_00147 PF06178 Oligogalacturonate-specific porin protein (KdgM) LC20_00148 PF06917 Periplasmic pectate lyase LC20_00150 PF00375 Sodium:dicarboxylate symporter family LC20_00151 PF00675 Insulinase (Peptidase family M16) LC20_00151 PF05193 Peptidase M16 inactive domain LC20_00152 PF00294 pfkB family carbohydrate kinase LC20_00153 PF01361 Tautomerase enzyme LC20_00155 PF00563 EAL domain LC20_00156 PF05170 AsmA family LC20_00159 PF00083 Sugar (and other) transporter LC20_00159 PF07690 Major Facilitator Superfamily LC20_00160 PF03631 Virulence factor BrkB LC20_00161 PF13018 Extended Signal Peptide of Type V secretion system LC20_00161 PF03212 Pertactin LC20_00161 PF16168 Adhesin of bacterial autotransporter system, probable stalk LC20_00161 PF03797 Autotransporter beta-domain LC20_00162 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LC20_00162 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_00164 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LC20_00166 PF01432 Peptidase family M3 LC20_00167 PF04445 Putative SAM-dependent methyltransferase LC20_00168 PF00413 Matrixin LC20_00168 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LC20_00168 PF08548 Peptidase M10 serralysin C terminal LC20_00169 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LC20_00169 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LC20_00170 PF00582 Universal stress protein family LC20_00171 PF10625 Universal stress protein B (UspB) LC20_00172 PF01384 Phosphate transporter family LC20_00182 PF07476 Methylaspartate ammonia-lyase C-terminus LC20_00182 PF05034 Methylaspartate ammonia-lyase N-terminus LC20_00183 PF06368 Methylaspartate mutase E chain (MutE) LC20_00184 PF13941 MutL protein LC20_00185 PF02310 B12 binding domain LC20_00186 PF00288 GHMP kinases N terminal domain LC20_00192 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_00192 PF14824 Sirohaem biosynthesis protein central LC20_00192 PF10414 Sirohaem synthase dimerisation region LC20_00194 PF03466 LysR substrate binding domain LC20_00194 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00195 PF05683 Fumarase C-terminus LC20_00195 PF05681 Fumarate hydratase (Fumerase) LC20_00196 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LC20_00201 PF00083 Sugar (and other) transporter LC20_00214 PF00294 pfkB family carbohydrate kinase LC20_00217 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_00217 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LC20_00218 PF01261 Xylose isomerase-like TIM barrel LC20_00219 PF00583 Acetyltransferase (GNAT) family LC20_00222 PF02678 Pirin LC20_00222 PF17954 Quercetinase C-terminal cupin domain LC20_00223 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_00223 PF00356 Bacterial regulatory proteins, lacI family LC20_00224 PF02447 GntP family permease LC20_00226 PF01202 Shikimate kinase LC20_00227 PF01914 MarC family integral membrane protein LC20_00228 PF02774 Semialdehyde dehydrogenase, dimerisation domain LC20_00228 PF01118 Semialdehyde dehydrogenase, NAD binding domain LC20_00234 PF07694 5TMR of 5TMR-LYT LC20_00234 PF06580 Histidine kinase LC20_00236 PF02806 Alpha amylase, C-terminal all-beta domain LC20_00236 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LC20_00236 PF00128 Alpha amylase, catalytic domain LC20_00239 PF00483 Nucleotidyl transferase LC20_00240 PF08323 Starch synthase catalytic domain LC20_00240 PF00534 Glycosyl transferases group 1 LC20_00241 PF00343 Carbohydrate phosphorylase LC20_00242 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LC20_00242 PF01266 FAD dependent oxidoreductase LC20_00244 PF00455 DeoR C terminal sensor domain LC20_00244 PF08220 DeoR-like helix-turn-helix domain LC20_00245 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LC20_00245 PF01694 Rhomboid family LC20_00246 PF00581 Rhodanese-like domain LC20_00248 PF17874 MalT-like TPR region LC20_00248 PF00196 Bacterial regulatory proteins, luxR family LC20_00249 PF00343 Carbohydrate phosphorylase LC20_00250 PF02446 4-alpha-glucanotransferase LC20_00251 PF01521 Iron-sulphur cluster biosynthesis LC20_00251 PF01106 NifU-like domain LC20_00252 PF00156 Phosphoribosyl transferase domain LC20_00253 PF00561 alpha/beta hydrolase fold LC20_00254 PF07338 Protein of unknown function (DUF1471) LC20_00255 PF09012 FeoC like transcriptional regulator LC20_00256 PF07670 Nucleoside recognition LC20_00256 PF17910 FeoB cytosolic helical domain LC20_00256 PF02421 Ferrous iron transport protein B LC20_00256 PF07664 Ferrous iron transport protein B C terminus LC20_00257 PF04023 FeoA domain LC20_00262 PF00072 Response regulator receiver domain LC20_00262 PF00486 Transcriptional regulatory protein, C terminal LC20_00263 PF00512 His Kinase A (phospho-acceptor) domain LC20_00263 PF00672 HAMP domain LC20_00263 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00264 PF01293 Phosphoenolpyruvate carboxykinase LC20_00265 PF01430 Hsp33 protein LC20_00266 PF01479 S4 domain LC20_00267 PF13419 Haloacid dehalogenase-like hydrolase LC20_00268 PF07095 Intracellular growth attenuator protein IgaA LC20_00269 PF00293 NUDIX domain LC20_00270 PF00912 Transglycosylase LC20_00270 PF17092 Penicillin-binding protein OB-like domain LC20_00270 PF00905 Penicillin binding protein transpeptidase domain LC20_00275 PF00263 Bacterial type II and III secretion system protein LC20_00275 PF03958 Bacterial type II/III secretion system short domain LC20_00277 PF01202 Shikimate kinase LC20_00278 PF01761 3-dehydroquinate synthase LC20_00279 PF05036 Sporulation related domain LC20_00280 PF02086 D12 class N6 adenine-specific DNA methyltransferase LC20_00281 PF00834 Ribulose-phosphate 3 epimerase family LC20_00282 PF13419 Haloacid dehalogenase-like hydrolase LC20_00283 PF00579 tRNA synthetases class I (W and Y) LC20_00284 PF10414 Sirohaem synthase dimerisation region LC20_00284 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_00284 PF14824 Sirohaem biosynthesis protein central LC20_00285 PF01226 Formate/nitrite transporter LC20_00286 PF13806 Rieske-like [2Fe-2S] domain LC20_00287 PF18267 Rubredoxin NAD+ reductase C-terminal domain LC20_00287 PF04324 BFD-like [2Fe-2S] binding domain LC20_00287 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_00287 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LC20_00287 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LC20_00290 PF07969 Amidohydrolase family LC20_00291 PF07690 Major Facilitator Superfamily LC20_00295 PF00356 Bacterial regulatory proteins, lacI family LC20_00296 PF11975 Family 4 glycosyl hydrolase C-terminal domain LC20_00296 PF02056 Family 4 glycosyl hydrolase LC20_00297 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LC20_00298 PF05872 Bacterial protein of unknown function (DUF853) LC20_00299 PF00117 Glutamine amidotransferase class-I LC20_00300 PF00202 Aminotransferase class-III LC20_00301 PF12805 FUSC-like inner membrane protein yccS LC20_00302 PF13545 Crp-like helix-turn-helix domain LC20_00302 PF00027 Cyclic nucleotide-binding domain LC20_00303 PF02566 OsmC-like protein LC20_00304 PF00485 Phosphoribulokinase / Uridine kinase family LC20_00305 PF06794 Uncharacterised protein family (UPF0270) LC20_00306 PF00561 alpha/beta hydrolase fold LC20_00307 PF01810 LysE type translocator LC20_00308 PF02567 Phenazine biosynthesis-like protein LC20_00310 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LC20_00311 PF00005 ABC transporter LC20_00312 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00313 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LC20_00315 PF12848 ABC transporter LC20_00315 PF00005 ABC transporter LC20_00316 PF02525 Flavodoxin-like fold LC20_00317 PF00999 Sodium/hydrogen exchanger family LC20_00317 PF02254 TrkA-N domain LC20_00318 PF09526 Probable metal-binding protein (DUF2387) LC20_00319 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LC20_00320 PF04102 SlyX LC20_00321 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LC20_00321 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LC20_00322 PF08348 YheO-like PAS domain LC20_00322 PF13309 HTH domain LC20_00323 PF02635 DsrE/DsrF-like family LC20_00324 PF02635 DsrE/DsrF-like family LC20_00325 PF04077 DsrH like protein LC20_00326 PF00164 Ribosomal protein S12/S23 LC20_00327 PF00177 Ribosomal protein S7p/S5e LC20_00328 PF03764 Elongation factor G, domain IV LC20_00328 PF00009 Elongation factor Tu GTP binding domain LC20_00328 PF14492 Elongation Factor G, domain II LC20_00328 PF00679 Elongation factor G C-terminus LC20_00328 PF03144 Elongation factor Tu domain 2 LC20_00333 PF04324 BFD-like [2Fe-2S] binding domain LC20_00334 PF00210 Ferritin-like domain LC20_00335 PF00338 Ribosomal protein S10p/S20e LC20_00336 PF00297 Ribosomal protein L3 LC20_00337 PF00573 Ribosomal protein L4/L1 family LC20_00338 PF00276 Ribosomal protein L23 LC20_00339 PF03947 Ribosomal Proteins L2, C-terminal domain LC20_00339 PF00181 Ribosomal Proteins L2, RNA binding domain LC20_00341 PF00237 Ribosomal protein L22p/L17e LC20_00342 PF07650 KH domain LC20_00342 PF00189 Ribosomal protein S3, C-terminal domain LC20_00343 PF00252 Ribosomal protein L16p/L10e LC20_00344 PF00831 Ribosomal L29 protein LC20_00345 PF00366 Ribosomal protein S17 LC20_00347 PF00467 KOW motif LC20_00347 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LC20_00348 PF00281 Ribosomal protein L5 LC20_00348 PF00673 ribosomal L5P family C-terminus LC20_00349 PF00253 Ribosomal protein S14p/S29e LC20_00350 PF00410 Ribosomal protein S8 LC20_00351 PF00347 Ribosomal protein L6 LC20_00352 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LC20_00353 PF00333 Ribosomal protein S5, N-terminal domain LC20_00353 PF03719 Ribosomal protein S5, C-terminal domain LC20_00354 PF00327 Ribosomal protein L30p/L7e LC20_00355 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LC20_00356 PF00344 SecY translocase LC20_00357 PF00416 Ribosomal protein S13/S18 LC20_00358 PF00411 Ribosomal protein S11 LC20_00359 PF01479 S4 domain LC20_00359 PF00163 Ribosomal protein S4/S9 N-terminal domain LC20_00360 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LC20_00360 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LC20_00360 PF01000 RNA polymerase Rpb3/RpoA insert domain LC20_00361 PF01196 Ribosomal protein L17 LC20_00362 PF09350 Domain of unknown function (DUF1992) LC20_00363 PF13411 MerR HTH family regulatory protein LC20_00364 PF03889 Alternative ribosome-rescue factor A LC20_00365 PF01741 Large-conductance mechanosensitive channel, MscL LC20_00366 PF02254 TrkA-N domain LC20_00366 PF02080 TrkA-C domain LC20_00367 PF01189 16S rRNA methyltransferase RsmB/F LC20_00367 PF01029 NusB family LC20_00368 PF02911 Formyl transferase, C-terminal domain LC20_00368 PF00551 Formyl transferase LC20_00369 PF01327 Polypeptide deformylase LC20_00370 PF17782 DprA winged helix domain LC20_00370 PF02481 DNA recombination-mediator protein A LC20_00374 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LC20_00376 PF07484 Phage Tail Collar Domain LC20_00376 PF03335 Phage tail fibre repeat LC20_00376 PF08400 Prophage tail fibre N-terminal LC20_00404 PF05840 Bacteriophage replication gene A protein (GPA) LC20_00416 PF00589 Phage integrase family LC20_00416 PF02899 Phage integrase, N-terminal SAM-like domain LC20_00418 PF04361 Protein of unknown function (DUF494) LC20_00419 PF01396 Topoisomerase DNA binding C4 zinc finger LC20_00420 PF01300 Telomere recombination LC20_00421 PF08501 Shikimate dehydrogenase substrate binding domain LC20_00421 PF01488 Shikimate / quinate 5-dehydrogenase LC20_00421 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LC20_00422 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_00426 PF04204 Homoserine O-succinyltransferase LC20_00427 PF01274 Malate synthase LC20_00428 PF00463 Isocitrate lyase family LC20_00429 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LC20_00430 PF01614 Bacterial transcriptional regulator LC20_00430 PF09339 IclR helix-turn-helix domain LC20_00431 PF02607 B12 binding domain LC20_00431 PF02310 B12 binding domain LC20_00431 PF02965 Vitamin B12 dependent methionine synthase, activation domain LC20_00431 PF00809 Pterin binding enzyme LC20_00431 PF02574 Homocysteine S-methyltransferase LC20_00433 PF00696 Amino acid kinase family LC20_00433 PF01842 ACT domain LC20_00435 PF00342 Phosphoglucose isomerase LC20_00437 PF06146 Phosphate-starvation-inducible E LC20_00438 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00439 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00439 PF14785 Maltose transport system permease protein MalF P2 domain LC20_00440 PF01547 Bacterial extracellular solute-binding protein LC20_00441 PF17912 MalK OB fold domain LC20_00441 PF00005 ABC transporter LC20_00442 PF02264 LamB porin LC20_00443 PF07148 Maltose operon periplasmic protein precursor (MalM) LC20_00446 PF04345 Chorismate lyase LC20_00447 PF01040 UbiA prenyltransferase family LC20_00448 PF01553 Acyltransferase LC20_00449 PF01219 Prokaryotic diacylglycerol kinase LC20_00450 PF01726 LexA DNA binding domain LC20_00450 PF00717 Peptidase S24-like LC20_00451 PF05532 CsbD-like LC20_00453 PF01475 Ferric uptake regulator family LC20_00464 PF10065 Uncharacterized conserved protein (DUF2303) LC20_00468 PF10502 Signal peptidase, peptidase S26 LC20_00472 PF03354 Phage Terminase LC20_00473 PF05869 DNA N-6-adenine-methyltransferase (Dam) LC20_00475 PF03374 Phage antirepressor protein KilAC domain LC20_00475 PF09669 Phage regulatory protein Rha (Phage_pRha) LC20_00476 PF06147 Protein of unknown function (DUF968) LC20_00480 PF01555 DNA methylase LC20_00482 PF00959 Phage lysozyme LC20_00500 PF17482 Phage tail sheath C-terminal domain LC20_00500 PF04984 Phage tail sheath protein subtilisin-like domain LC20_00513 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LC20_00525 PF01207 Dihydrouridine synthase (Dus) LC20_00526 PF09583 Phage shock protein G (Phageshock_PspG) LC20_00528 PF08240 Alcohol dehydrogenase GroES-like domain LC20_00528 PF00107 Zinc-binding dehydrogenase LC20_00529 PF03796 DnaB-like helicase C terminal domain LC20_00529 PF00772 DnaB-like helicase N terminal domain LC20_00530 PF01168 Alanine racemase, N-terminal domain LC20_00530 PF00842 Alanine racemase, C-terminal domain LC20_00531 PF00155 Aminotransferase class I and II LC20_00533 PF04237 YjbR LC20_00537 PF00436 Single-strand binding protein family LC20_00540 PF00860 Permease family LC20_00542 PF00999 Sodium/hydrogen exchanger family LC20_00543 PF03466 LysR substrate binding domain LC20_00543 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00544 PF03788 LrgA family LC20_00548 PF00005 ABC transporter LC20_00549 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00550 PF00528 Binding-protein-dependent transport system inner membrane component LC20_00551 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_00553 PF03279 Bacterial lipid A biosynthesis acyltransferase LC20_00554 PF00939 Sodium:sulfate symporter transmembrane region LC20_00556 PF00313 'Cold-shock' DNA-binding domain LC20_00557 PF00313 'Cold-shock' DNA-binding domain LC20_00558 PF05433 Glycine zipper 2TM domain LC20_00559 PF00990 Diguanylate cyclase, GGDEF domain LC20_00559 PF08448 PAS fold LC20_00560 PF14659 Phage integrase, N-terminal SAM-like domain LC20_00560 PF00589 Phage integrase family LC20_00560 PF13356 Arm DNA-binding domain LC20_00577 PF03354 Phage Terminase LC20_00580 PF02954 Bacterial regulatory protein, Fis family LC20_00581 PF01207 Dihydrouridine synthase (Dus) LC20_00584 PF00474 Sodium:solute symporter family LC20_00585 PF06196 Protein of unknown function (DUF997) LC20_00586 PF00289 Biotin carboxylase, N-terminal domain LC20_00586 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LC20_00586 PF02785 Biotin carboxylase C-terminal domain LC20_00587 PF00364 Biotin-requiring enzyme LC20_00588 PF01220 Dehydroquinase class II LC20_00589 PF01794 Ferric reductase like transmembrane component LC20_00590 PF00174 Oxidoreductase molybdopterin binding domain LC20_00591 PF08240 Alcohol dehydrogenase GroES-like domain LC20_00591 PF00107 Zinc-binding dehydrogenase LC20_00600 PF04085 rod shape-determining protein MreC LC20_00601 PF04093 rod shape-determining protein MreD LC20_00602 PF02545 Maf-like protein LC20_00603 PF10150 Ribonuclease E/G family LC20_00603 PF00575 S1 RNA binding domain LC20_00606 PF00795 Carbon-nitrogen hydrolase LC20_00607 PF01523 Putative modulator of DNA gyrase LC20_00608 PF03466 LysR substrate binding domain LC20_00608 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00609 PF07869 Protein of unknown function (DUF1656) LC20_00610 PF13533 Biotin-lipoyl like LC20_00611 PF04632 Fusaric acid resistance protein family LC20_00612 PF00171 Aldehyde dehydrogenase family LC20_00614 PF01337 Barstar (barnase inhibitor) LC20_00615 PF04751 Protein of unknown function (DUF615) LC20_00616 PF01523 Putative modulator of DNA gyrase LC20_00617 PF07361 Cytochrome b562 LC20_00618 PF14760 Rnk N-terminus LC20_00618 PF01272 Transcription elongation factor, GreA/GreB, C-term LC20_00624 PF01979 Amidohydrolase family LC20_00625 PF03841 L-seryl-tRNA selenium transferase LC20_00626 PF07071 KDGP aldolase LC20_00627 PF10282 Lactonase, 7-bladed beta-propeller LC20_00628 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LC20_00628 PF00874 PRD domain LC20_00628 PF05043 Mga helix-turn-helix domain LC20_00628 PF08279 HTH domain LC20_00629 PF00689 Cation transporting ATPase, C-terminus LC20_00629 PF00690 Cation transporter/ATPase, N-terminus LC20_00630 PF00356 Bacterial regulatory proteins, lacI family LC20_00631 PF00367 phosphotransferase system, EIIB LC20_00631 PF02378 Phosphotransferase system, EIIC LC20_00632 PF00128 Alpha amylase, catalytic domain LC20_00632 PF11941 Domain of unknown function (DUF3459) LC20_00635 PF04168 A predicted alpha-helical domain with a conserved ER motif. LC20_00635 PF14403 Circularly permuted ATP-grasp type 2 LC20_00636 PF14403 Circularly permuted ATP-grasp type 2 LC20_00638 PF01042 Endoribonuclease L-PSP LC20_00639 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LC20_00639 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LC20_00640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LC20_00640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LC20_00642 PF00381 PTS HPr component phosphorylation site LC20_00643 PF03668 P-loop ATPase protein family LC20_00644 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LC20_00645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LC20_00646 PF00309 Sigma-54 factor, Activator interacting domain (AID) LC20_00646 PF04552 Sigma-54, DNA binding domain LC20_00646 PF04963 Sigma-54 factor, core binding domain LC20_00647 PF12399 Branched-chain amino acid ATP-binding cassette transporter LC20_00647 PF00005 ABC transporter LC20_00648 PF03968 OstA-like protein LC20_00649 PF06835 Lipopolysaccharide-assembly, LptC-related LC20_00651 PF01380 SIS domain LC20_00651 PF00571 CBS domain LC20_00652 PF01699 Sodium/calcium exchanger protein LC20_00653 PF00005 ABC transporter LC20_00654 PF02405 Permease MlaE LC20_00655 PF02470 MlaD protein LC20_00656 PF05494 MlaC protein LC20_00657 PF13466 STAS domain LC20_00658 PF01722 BolA-like protein LC20_00659 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LC20_00662 PF13180 PDZ domain LC20_00663 PF13180 PDZ domain LC20_00663 PF00595 PDZ domain LC20_00664 PF06295 Protein of unknown function (DUF1043) LC20_00665 PF03969 AFG1-like ATPase LC20_00667 PF00572 Ribosomal protein L13 LC20_00668 PF00380 Ribosomal protein S9/S16 LC20_00670 PF02798 Glutathione S-transferase, N-terminal domain LC20_00670 PF00043 Glutathione S-transferase, C-terminal domain LC20_00671 PF04386 Stringent starvation protein B LC20_00673 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LC20_00673 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_00674 PF04898 Glutamate synthase central domain LC20_00674 PF00310 Glutamine amidotransferases class-II LC20_00674 PF01645 Conserved region in glutamate synthase LC20_00674 PF01493 GXGXG motif LC20_00675 PF04055 Radical SAM superfamily LC20_00675 PF16199 Radical_SAM C-terminal domain LC20_00676 PF00072 Response regulator receiver domain LC20_00676 PF00989 PAS fold LC20_00676 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00676 PF01627 Hpt domain LC20_00676 PF18415 Histidine kinase receptor ArcB trans-membrane domain LC20_00676 PF00512 His Kinase A (phospho-acceptor) domain LC20_00678 PF00912 Transglycosylase LC20_00679 PF04972 BON domain LC20_00680 PF13580 SIS domain LC20_00681 PF02021 Uncharacterised protein family UPF0102 LC20_00682 PF04348 LppC putative lipoprotein LC20_00683 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_00694 PF00239 Resolvase, N terminal domain LC20_00694 PF02796 Helix-turn-helix domain of resolvase LC20_00697 PF00672 HAMP domain LC20_00697 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_00697 PF02203 Tar ligand binding domain homologue LC20_00699 PF00072 Response regulator receiver domain LC20_00699 PF02954 Bacterial regulatory protein, Fis family LC20_00699 PF00158 Sigma-54 interaction domain LC20_00703 PF05433 Glycine zipper 2TM domain LC20_00704 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LC20_00704 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LC20_00705 PF13247 4Fe-4S dicluster domain LC20_00706 PF03916 Polysulphide reductase, NrfD LC20_00707 PF00374 Nickel-dependent hydrogenase LC20_00708 PF01750 Hydrogenase maturation protease LC20_00709 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LC20_00710 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LC20_00711 PF02492 CobW/HypB/UreG, nucleotide-binding domain LC20_00712 PF01455 HupF/HypC family LC20_00713 PF01924 Hydrogenase formation hypA family LC20_00715 PF02769 AIR synthase related protein, C-terminal domain LC20_00715 PF00586 AIR synthase related protein, N-terminal domain LC20_00716 PF00708 Acylphosphatase LC20_00716 PF17788 HypF Kae1-like domain LC20_00716 PF01300 Telomere recombination LC20_00716 PF07503 HypF finger LC20_00724 PF02796 Helix-turn-helix domain of resolvase LC20_00724 PF00239 Resolvase, N terminal domain LC20_00725 PF03960 ArsC family LC20_00726 PF02040 Arsenical pump membrane protein LC20_00727 PF02374 Anion-transporting ATPase LC20_00728 PF06953 Arsenical resistance operon trans-acting repressor ArsD LC20_00732 PF01370 NAD dependent epimerase/dehydratase family LC20_00733 PF07690 Major Facilitator Superfamily LC20_00735 PF00550 Phosphopantetheine attachment site LC20_00735 PF00857 Isochorismatase family LC20_00736 PF00501 AMP-binding enzyme LC20_00736 PF13193 AMP-binding enzyme C-terminal domain LC20_00737 PF00425 chorismate binding enzyme LC20_00738 PF01497 Periplasmic binding protein LC20_00739 PF05977 Transmembrane secretion effector LC20_00741 PF01032 FecCD transport family LC20_00742 PF01032 FecCD transport family LC20_00743 PF00005 ABC transporter LC20_00744 PF00975 Thioesterase domain LC20_00744 PF00550 Phosphopantetheine attachment site LC20_00744 PF00668 Condensation domain LC20_00744 PF00501 AMP-binding enzyme LC20_00744 PF13193 AMP-binding enzyme C-terminal domain LC20_00745 PF03621 MbtH-like protein LC20_00746 PF11806 Domain of unknown function (DUF3327) LC20_00746 PF00756 Putative esterase LC20_00749 PF00593 TonB dependent receptor LC20_00749 PF07715 TonB-dependent Receptor Plug Domain LC20_00751 PF11604 Copper binding periplasmic protein CusF LC20_00753 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_00753 PF00529 HlyD membrane-fusion protein of T1SS LC20_00760 PF04972 BON domain LC20_00760 PF00263 Bacterial type II and III secretion system protein LC20_00760 PF13629 Pilus formation protein N terminal region LC20_00763 PF00437 Type II/IV secretion system protein LC20_00777 PF02472 Biopolymer transport protein ExbD/TolR LC20_00778 PF01618 MotA/TolQ/ExbB proton channel family LC20_00781 PF01053 Cys/Met metabolism PLP-dependent enzyme LC20_00782 PF09335 SNARE associated Golgi protein LC20_00784 PF12833 Helix-turn-helix domain LC20_00784 PF06719 AraC-type transcriptional regulator N-terminus LC20_00785 PF00465 Iron-containing alcohol dehydrogenase LC20_00786 PF00248 Aldo/keto reductase family LC20_00787 PF04055 Radical SAM superfamily LC20_00787 PF11842 Domain of unknown function (DUF3362) LC20_00787 PF08497 Radical SAM N-terminal LC20_00788 PF07731 Multicopper oxidase LC20_00788 PF07732 Multicopper oxidase LC20_00789 PF01553 Acyltransferase LC20_00790 PF03989 DNA gyrase C-terminal domain, beta-propeller LC20_00790 PF00521 DNA gyrase/topoisomerase IV, subunit A LC20_00791 PF02525 Flavodoxin-like fold LC20_00792 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00792 PF03466 LysR substrate binding domain LC20_00793 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00793 PF01751 Toprim domain LC20_00793 PF00204 DNA gyrase B LC20_00793 PF00986 DNA gyrase B subunit, carboxyl terminus LC20_00796 PF00149 Calcineurin-like phosphoesterase LC20_00797 PF06853 Protein of unknown function (DUF1249) LC20_00798 PF00293 NUDIX domain LC20_00800 PF02321 Outer membrane efflux protein LC20_00801 PF06693 Protein of unknown function (DUF1190) LC20_00802 PF03738 Glutathionylspermidine synthase preATP-grasp LC20_00803 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LC20_00804 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LC20_00805 PF04380 Membrane fusogenic activity LC20_00806 PF13520 Amino acid permease LC20_00807 PF00294 pfkB family carbohydrate kinase LC20_00807 PF01467 Cytidylyltransferase-like LC20_00808 PF03710 Glutamate-ammonia ligase adenylyltransferase LC20_00808 PF08335 GlnD PII-uridylyltransferase LC20_00809 PF01928 CYTH domain LC20_00810 PF08239 Bacterial SH3 domain LC20_00811 PF01966 HD domain LC20_00811 PF12627 Probable RNA and SrmB- binding site of polymerase A LC20_00811 PF01743 Poly A polymerase head domain LC20_00812 PF02673 Bacitracin resistance protein BacA LC20_00813 PF02152 Dihydroneopterin aldolase LC20_00814 PF02660 Glycerol-3-phosphate acyltransferase LC20_00815 PF00814 Glycoprotease family LC20_00816 PF01165 Ribosomal protein S21 LC20_00817 PF01807 CHC2 zinc finger LC20_00817 PF08275 DNA primase catalytic core, N-terminal domain LC20_00817 PF08278 DNA primase DnaG DnaB-binding LC20_00817 PF10410 DnaB-helicase binding domain of primase LC20_00819 PF03979 Sigma-70 factor, region 1.1 LC20_00819 PF04546 Sigma-70, non-essential region LC20_00819 PF04539 Sigma-70 region 3 LC20_00819 PF04542 Sigma-70 region 2 LC20_00819 PF00140 Sigma-70 factor, region 1.2 LC20_00819 PF04545 Sigma-70, region 4 LC20_00820 PF08986 Domain of unknown function (DUF1889) LC20_00852 PF07075 Protein of unknown function (DUF1343) LC20_00855 PF00933 Glycosyl hydrolase family 3 N terminal domain LC20_00855 PF01915 Glycosyl hydrolase family 3 C-terminal domain LC20_00856 PF01380 SIS domain LC20_00856 PF01418 Helix-turn-helix domain, rpiR family LC20_00857 PF13580 SIS domain LC20_00858 PF02378 Phosphotransferase system, EIIC LC20_00858 PF00367 phosphotransferase system, EIIB LC20_00859 PF04960 Glutaminase LC20_00860 PF13520 Amino acid permease LC20_00861 PF00282 Pyridoxal-dependent decarboxylase conserved domain LC20_00862 PF01638 HxlR-like helix-turn-helix LC20_00863 PF07690 Major Facilitator Superfamily LC20_00864 PF03729 Short repeat of unknown function (DUF308) LC20_00865 PF00892 EamA-like transporter family LC20_00867 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LC20_00867 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_00868 PF05175 Methyltransferase small domain LC20_00872 PF01863 Protein of unknown function DUF45 LC20_00873 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_00874 PF03741 Integral membrane protein TerC family LC20_00876 PF00375 Sodium:dicarboxylate symporter family LC20_00877 PF10688 Bacterial inner membrane protein LC20_00878 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LC20_00878 PF08666 SAF domain LC20_00879 PF01232 Mannitol dehydrogenase Rossmann domain LC20_00879 PF08125 Mannitol dehydrogenase C-terminal domain LC20_00880 PF02614 Glucuronate isomerase LC20_00881 PF07690 Major Facilitator Superfamily LC20_00882 PF00392 Bacterial regulatory proteins, gntR family LC20_00882 PF07729 FCD domain LC20_00884 PF09335 SNARE associated Golgi protein LC20_00885 PF13721 SecD export protein N-terminal TM region LC20_00888 PF05957 Bacterial protein of unknown function (DUF883) LC20_00889 PF07332 Putative Actinobacterial Holin-X, holin superfamily III LC20_00890 PF13997 YqjK-like protein LC20_00891 PF07681 DoxX LC20_00892 PF13409 Glutathione S-transferase, N-terminal domain LC20_00893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00893 PF03466 LysR substrate binding domain LC20_00894 PF02678 Pirin LC20_00894 PF17954 Quercetinase C-terminal cupin domain LC20_00904 PF13488 Glycine zipper LC20_00904 PF00691 OmpA family LC20_00906 PF10431 C-terminal, D2-small domain, of ClpB protein LC20_00906 PF00004 ATPase family associated with various cellular activities (AAA) LC20_00906 PF07724 AAA domain (Cdc48 subfamily) LC20_00906 PF17871 AAA lid domain LC20_00941 PF00484 Carbonic anhydrase LC20_00942 PF01638 HxlR-like helix-turn-helix LC20_00946 PF00226 DnaJ domain LC20_00946 PF01556 DnaJ C terminal domain LC20_00947 PF00356 Bacterial regulatory proteins, lacI family LC20_00949 PF07690 Major Facilitator Superfamily LC20_00950 PF13802 Galactose mutarotase-like LC20_00950 PF01055 Glycosyl hydrolases family 31 LC20_00950 PF16338 Domain of unknown function (DUF4968) LC20_00950 PF17137 Domain of unknown function (DUF5110) LC20_00952 PF01037 Lrp/AsnC ligand binding domain LC20_00960 PF01336 OB-fold nucleic acid binding domain LC20_00960 PF00152 tRNA synthetases class II (D, K and N) LC20_00962 PF17768 RecJ OB domain LC20_00962 PF02272 DHHA1 domain LC20_00962 PF01368 DHH family LC20_00963 PF10411 Disulfide bond isomerase protein N-terminus LC20_00963 PF13098 Thioredoxin-like domain LC20_00964 PF00589 Phage integrase family LC20_00964 PF02899 Phage integrase, N-terminal SAM-like domain LC20_00965 PF00258 Flavodoxin LC20_00966 PF06123 Inner membrane protein CreD LC20_00967 PF00512 His Kinase A (phospho-acceptor) domain LC20_00967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_00967 PF00672 HAMP domain LC20_00968 PF00486 Transcriptional regulatory protein, C terminal LC20_00968 PF00072 Response regulator receiver domain LC20_00969 PF07254 Membrane-bound toxin component of toxin-antitoxin system LC20_00970 PF03937 Flavinator of succinate dehydrogenase LC20_00971 PF01571 Aminomethyltransferase folate-binding domain LC20_00972 PF03006 Haemolysin-III related LC20_00976 PF02347 Glycine cleavage system P-protein LC20_00977 PF01597 Glycine cleavage H-protein LC20_00978 PF01571 Aminomethyltransferase folate-binding domain LC20_00978 PF08669 Glycine cleavage T-protein C-terminal barrel domain LC20_00981 PF01494 FAD binding domain LC20_00982 PF05195 Aminopeptidase P, N-terminal domain LC20_00982 PF00557 Metallopeptidase family M24 LC20_00983 PF03695 Uncharacterised protein family (UPF0149) LC20_00984 PF05164 Cell division protein ZapA LC20_00985 PF01812 5-formyltetrahydrofolate cyclo-ligase family LC20_00986 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_00986 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LC20_00986 PF01842 ACT domain LC20_00988 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LC20_00989 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_00989 PF03466 LysR substrate binding domain LC20_00990 PF04402 Protein of unknown function (DUF541) LC20_00991 PF01810 LysE type translocator LC20_00992 PF00924 Mechanosensitive ion channel LC20_00992 PF05552 Conserved TM helix LC20_00993 PF01116 Fructose-bisphosphate aldolase class-II LC20_00994 PF00162 Phosphoglycerate kinase LC20_00995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LC20_00995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LC20_00997 PF02779 Transketolase, pyrimidine binding domain LC20_00997 PF00456 Transketolase, thiamine diphosphate binding domain LC20_00997 PF02780 Transketolase, C-terminal domain LC20_00998 PF01435 Peptidase family M48 LC20_01000 PF00355 Rieske [2Fe-2S] domain LC20_01001 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LC20_01001 PF17944 Arginine decarboxylase C-terminal helical extension LC20_01001 PF17810 Arginine decarboxylase helical bundle domain LC20_01003 PF00438 S-adenosylmethionine synthetase, N-terminal domain LC20_01003 PF02773 S-adenosylmethionine synthetase, C-terminal domain LC20_01003 PF02772 S-adenosylmethionine synthetase, central domain LC20_01005 PF04143 Sulphur transport LC20_01007 PF17283 SprT-like zinc ribbon domain LC20_01007 PF10263 SprT-like family LC20_01008 PF04231 Endonuclease I LC20_01009 PF04452 RNA methyltransferase LC20_01010 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LC20_01010 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LC20_01012 PF02622 Uncharacterized ACR, COG1678 LC20_01013 PF03652 Holliday junction resolvase LC20_01015 PF00795 Carbon-nitrogen hydrolase LC20_01016 PF04371 Porphyromonas-type peptidyl-arginine deiminase LC20_01017 PF00437 Type II/IV secretion system protein LC20_01018 PF01168 Alanine racemase, N-terminal domain LC20_01019 PF03807 NADP oxidoreductase coenzyme F420-dependent LC20_01019 PF14748 Pyrroline-5-carboxylate reductase dimerisation LC20_01020 PF02325 YGGT family LC20_01021 PF02594 Uncharacterised ACR, YggU family COG1872 LC20_01022 PF01725 Ham1 family LC20_01023 PF04055 Radical SAM superfamily LC20_01023 PF06969 HemN C-terminal domain LC20_01024 PF11101 Protein of unknown function (DUF2884) LC20_01025 PF04960 Glutaminase LC20_01026 PF04320 Protein with unknown function (DUF469) LC20_01028 PF07690 Major Facilitator Superfamily LC20_01029 PF03466 LysR substrate binding domain LC20_01029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01030 PF02390 Putative methyltransferase LC20_01031 PF14815 NUDIX domain LC20_01031 PF00730 HhH-GPD superfamily base excision DNA repair protein LC20_01031 PF10576 Iron-sulfur binding domain of endonuclease III LC20_01031 PF00633 Helix-hairpin-helix motif LC20_01033 PF04362 Bacterial Fe(2+) trafficking LC20_01034 PF01464 Transglycosylase SLT domain LC20_01034 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LC20_01036 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LC20_01036 PF01276 Orn/Lys/Arg decarboxylase, major domain LC20_01036 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LC20_01072 PF00482 Type II secretion system (T2SS), protein F LC20_01073 PF08334 Type II secretion system (T2SS), protein G LC20_01073 PF07963 Prokaryotic N-terminal methylation motif LC20_01074 PF07963 Prokaryotic N-terminal methylation motif LC20_01074 PF02501 Type II secretion system (T2SS), protein I LC20_01077 PF05134 Type II secretion system (T2SS), protein L LC20_01077 PF12693 GspL periplasmic domain LC20_01080 PF06750 Bacterial Peptidase A24 N-terminal domain LC20_01080 PF01478 Type IV leader peptidase family LC20_01086 PF03466 LysR substrate binding domain LC20_01086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01088 PF07690 Major Facilitator Superfamily LC20_01089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01089 PF03466 LysR substrate binding domain LC20_01090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LC20_01090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LC20_01091 PF00356 Bacterial regulatory proteins, lacI family LC20_01092 PF01568 Molydopterin dinucleotide binding domain LC20_01092 PF00384 Molybdopterin oxidoreductase LC20_01093 PF13193 AMP-binding enzyme C-terminal domain LC20_01093 PF01553 Acyltransferase LC20_01093 PF00501 AMP-binding enzyme LC20_01094 PF07690 Major Facilitator Superfamily LC20_01095 PF00248 Aldo/keto reductase family LC20_01096 PF03741 Integral membrane protein TerC family LC20_01097 PF02976 DNA mismatch repair enzyme MutH LC20_01099 PF00293 NUDIX domain LC20_01100 PF02896 PEP-utilising enzyme, TIM barrel domain LC20_01100 PF01590 GAF domain LC20_01100 PF00391 PEP-utilising enzyme, mobile domain LC20_01100 PF05524 PEP-utilising enzyme, N-terminal LC20_01101 PF01790 Prolipoprotein diacylglyceryl transferase LC20_01102 PF00303 Thymidylate synthase LC20_01107 PF17946 RecC C-terminal domain LC20_01108 PF00675 Insulinase (Peptidase family M16) LC20_01108 PF05193 Peptidase M16 inactive domain LC20_01108 PF16187 Middle or third domain of peptidase_M16 LC20_01111 PF13538 UvrD-like helicase C-terminal domain LC20_01112 PF00583 Acetyltransferase (GNAT) family LC20_01112 PF00696 Amino acid kinase family LC20_01113 PF11741 AMIN domain LC20_01113 PF01520 N-acetylmuramoyl-L-alanine amidase LC20_01118 PF06725 3D domain LC20_01118 PF03562 MltA specific insert domain LC20_01119 PF00899 ThiF family LC20_01120 PF02657 Fe-S metabolism associated domain LC20_01121 PF00266 Aminotransferase class-V LC20_01122 PF06004 Bacterial protein of unknown function (DUF903) LC20_01123 PF03466 LysR substrate binding domain LC20_01123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01124 PF04241 Protein of unknown function (DUF423) LC20_01125 PF01728 FtsJ-like methyltransferase LC20_01125 PF18125 RlmM ferredoxin-like domain LC20_01126 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LC20_01126 PF01367 5'-3' exonuclease, C-terminal SAM fold LC20_01129 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LC20_01129 PF14489 QueF-like protein LC20_01130 PF07348 Syd protein (SUKH-2) LC20_01133 PF13693 Winged helix-turn-helix DNA-binding LC20_01149 PF06252 Protein of unknown function (DUF1018) LC20_01152 PF00182 Chitinase class I LC20_01162 PF06074 Protein of unknown function (DUF935) LC20_01167 PF10124 Mu-like prophage major head subunit gpT LC20_01185 PF04287 tRNA pseudouridine synthase C LC20_01186 PF00849 RNA pseudouridylate synthase LC20_01187 PF00258 Flavodoxin LC20_01188 PF11944 Protein of unknown function (DUF3461) LC20_01190 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_01190 PF14602 Hexapeptide repeat of succinyl-transferase LC20_01190 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LC20_01191 PF08335 GlnD PII-uridylyltransferase LC20_01191 PF01842 ACT domain LC20_01191 PF01966 HD domain LC20_01191 PF01909 Nucleotidyltransferase domain LC20_01192 PF00557 Metallopeptidase family M24 LC20_01194 PF00318 Ribosomal protein S2 LC20_01195 PF00889 Elongation factor TS LC20_01196 PF00696 Amino acid kinase family LC20_01197 PF01765 Ribosome recycling factor LC20_01199 PF13288 DXP reductoisomerase C-terminal domain LC20_01199 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LC20_01199 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LC20_01200 PF01255 Putative undecaprenyl diphosphate synthase LC20_01202 PF02163 Peptidase family M50 LC20_01202 PF17820 PDZ domain LC20_01203 PF01103 Surface antigen LC20_01203 PF07244 Surface antigen variable number repeat LC20_01204 PF03938 Outer membrane protein (OmpH-like) LC20_01205 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LC20_01205 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_01206 PF07977 FabA-like domain LC20_01207 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_01207 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LC20_01208 PF02684 Lipid-A-disaccharide synthetase LC20_01209 PF01351 Ribonuclease HII LC20_01212 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LC20_01214 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LC20_01215 PF09179 TilS substrate binding domain LC20_01215 PF01171 PP-loop family LC20_01215 PF11734 TilS substrate C-terminal domain LC20_01216 PF00034 Cytochrome c LC20_01217 PF06786 Uncharacterised protein family (UPF0253) LC20_01218 PF07152 YaeQ protein LC20_01219 PF00472 RF-1 domain LC20_01220 PF17185 NlpE C-terminal OB domain LC20_01220 PF04170 NlpE N-terminal domain LC20_01221 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LC20_01221 PF03129 Anticodon binding domain LC20_01221 PF04073 Aminoacyl-tRNA editing domain LC20_01224 PF16358 RcsF lipoprotein LC20_01225 PF03180 NLPA lipoprotein LC20_01226 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01227 PF00005 ABC transporter LC20_01227 PF09383 NIL domain LC20_01229 PF10043 Predicted periplasmic lipoprotein (DUF2279) LC20_01230 PF13091 PLD-like domain LC20_01231 PF00583 Acetyltransferase (GNAT) family LC20_01231 PF13607 Succinyl-CoA ligase like flavodoxin domain LC20_01231 PF13380 CoA binding domain LC20_01233 PF00085 Thioredoxin LC20_01234 PF08032 RNA 2'-O ribose methyltransferase substrate binding LC20_01234 PF00588 SpoU rRNA Methylase family LC20_01235 PF07690 Major Facilitator Superfamily LC20_01236 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_01236 PF00529 HlyD membrane-fusion protein of T1SS LC20_01237 PF02321 Outer membrane efflux protein LC20_01238 PF01047 MarR family LC20_01239 PF05437 Branched-chain amino acid transport protein (AzlD) LC20_01240 PF03591 AzlC protein LC20_01245 PF16916 Dimerisation domain of Zinc Transporter LC20_01245 PF01545 Cation efflux family LC20_01247 PF01425 Amidase LC20_01254 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_01257 PF00005 ABC transporter LC20_01258 PF00266 Aminotransferase class-V LC20_01259 PF01546 Peptidase family M20/M25/M40 LC20_01259 PF07687 Peptidase dimerisation domain LC20_01260 PF00795 Carbon-nitrogen hydrolase LC20_01261 PF00155 Aminotransferase class I and II LC20_01262 PF00596 Class II Aldolase and Adducin N-terminal domain LC20_01264 PF03079 ARD/ARD' family LC20_01265 PF01008 Initiation factor 2 subunit family LC20_01266 PF01636 Phosphotransferase enzyme family LC20_01268 PF08479 POTRA domain, ShlB-type LC20_01268 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LC20_01272 PF18071 HMW1C N-terminal LC20_01272 PF18254 HMW1 domain 2 LC20_01273 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LC20_01273 PF09317 Domain of unknown function (DUF1974) LC20_01273 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LC20_01274 PF13580 SIS domain LC20_01275 PF13230 Glutamine amidotransferases class-II LC20_01276 PF03734 L,D-transpeptidase catalytic domain LC20_01277 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LC20_01277 PF11973 NQRA C-terminal domain LC20_01281 PF04205 FMN-binding domain LC20_01282 PF02508 Rnf-Nqr subunit, membrane protein LC20_01283 PF02508 Rnf-Nqr subunit, membrane protein LC20_01285 PF00175 Oxidoreductase NAD-binding domain LC20_01285 PF00970 Oxidoreductase FAD-binding domain LC20_01285 PF00111 2Fe-2S iron-sulfur cluster binding domain LC20_01286 PF02424 ApbE family LC20_01287 PF04400 (Na+)-NQR maturation NqrM LC20_01290 PF03009 Glycerophosphoryl diester phosphodiesterase family LC20_01291 PF01820 D-ala D-ala ligase N-terminus LC20_01291 PF07478 D-ala D-ala ligase C-terminus LC20_01292 PF08348 YheO-like PAS domain LC20_01292 PF13309 HTH domain LC20_01293 PF00291 Pyridoxal-phosphate dependent enzyme LC20_01295 PF11798 IMS family HHH motif LC20_01295 PF11799 impB/mucB/samB family C-terminal domain LC20_01295 PF00817 impB/mucB/samB family LC20_01296 PF07687 Peptidase dimerisation domain LC20_01296 PF01546 Peptidase family M20/M25/M40 LC20_01298 PF00156 Phosphoribosyl transferase domain LC20_01300 PF07417 Sigma factor-binding transcriptional regulator Crl LC20_01302 PF00696 Amino acid kinase family LC20_01302 PF01472 PUA domain LC20_01303 PF00171 Aldehyde dehydrogenase family LC20_01304 PF00294 pfkB family carbohydrate kinase LC20_01305 PF04227 Indigoidine synthase A like protein LC20_01306 PF07662 Na+ dependent nucleoside transporter C-terminus LC20_01306 PF01773 Na+ dependent nucleoside transporter N-terminus LC20_01307 PF07702 UTRA domain LC20_01307 PF00392 Bacterial regulatory proteins, gntR family LC20_01309 PF02378 Phosphotransferase system, EIIC LC20_01309 PF00367 phosphotransferase system, EIIB LC20_01310 PF02056 Family 4 glycosyl hydrolase LC20_01310 PF11975 Family 4 glycosyl hydrolase C-terminal domain LC20_01311 PF07317 Flagellar regulator YcgR LC20_01311 PF07238 PilZ domain LC20_01314 PF08241 Methyltransferase domain LC20_01317 PF01497 Periplasmic binding protein LC20_01318 PF00593 TonB dependent receptor LC20_01318 PF07715 TonB-dependent Receptor Plug Domain LC20_01319 PF01202 Shikimate kinase LC20_01322 PF06865 Pyrimidine/purine nucleoside phosphorylase LC20_01326 PF00480 ROK family LC20_01330 PF00486 Transcriptional regulatory protein, C terminal LC20_01330 PF00072 Response regulator receiver domain LC20_01331 PF00512 His Kinase A (phospho-acceptor) domain LC20_01331 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_01331 PF00989 PAS fold LC20_01331 PF11808 Phosphate regulon sensor protein PhoR LC20_01332 PF12849 PBP superfamily domain LC20_01333 PF05525 Branched-chain amino acid transport protein LC20_01334 PF00324 Amino acid permease LC20_01336 PF02903 Alpha amylase, N-terminal ig-like domain LC20_01336 PF00128 Alpha amylase, catalytic domain LC20_01341 PF10417 C-terminal domain of 1-Cys peroxiredoxin LC20_01341 PF00578 AhpC/TSA family LC20_01342 PF04336 Acyl carrier protein phosphodiesterase LC20_01343 PF02547 Queuosine biosynthesis protein LC20_01347 PF01702 Queuine tRNA-ribosyltransferase LC20_01348 PF02699 Preprotein translocase subunit LC20_01349 PF13721 SecD export protein N-terminal TM region LC20_01349 PF07549 SecD/SecF GG Motif LC20_01349 PF02355 Protein export membrane protein LC20_01350 PF07549 SecD/SecF GG Motif LC20_01350 PF02355 Protein export membrane protein LC20_01352 PF03477 ATP cone domain LC20_01353 PF01872 RibD C-terminal domain LC20_01353 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LC20_01354 PF00885 6,7-dimethyl-8-ribityllumazine synthase LC20_01355 PF01029 NusB family LC20_01356 PF02769 AIR synthase related protein, C-terminal domain LC20_01356 PF00586 AIR synthase related protein, N-terminal domain LC20_01357 PF04608 Phosphatidylglycerophosphatase A LC20_01358 PF02780 Transketolase, C-terminal domain LC20_01358 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LC20_01358 PF02779 Transketolase, pyrimidine binding domain LC20_01359 PF00348 Polyprenyl synthetase LC20_01360 PF02609 Exonuclease VII small subunit LC20_01361 PF02926 THUMP domain LC20_01361 PF02568 Thiamine biosynthesis protein (ThiI) LC20_01362 PF02954 Bacterial regulatory protein, Fis family LC20_01362 PF00072 Response regulator receiver domain LC20_01362 PF14532 Sigma-54 interaction domain LC20_01364 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_01364 PF00512 His Kinase A (phospho-acceptor) domain LC20_01364 PF00672 HAMP domain LC20_01370 PF01965 DJ-1/PfpI family LC20_01371 PF08546 Ketopantoate reductase PanE/ApbA C terminal LC20_01371 PF02558 Ketopantoate reductase PanE/ApbA LC20_01373 PF04461 Protein of unknown function (DUF520) LC20_01374 PF07690 Major Facilitator Superfamily LC20_01375 PF01040 UbiA prenyltransferase family LC20_01376 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LC20_01377 PF00510 Cytochrome c oxidase subunit III LC20_01378 PF00115 Cytochrome C and Quinol oxidase polypeptide I LC20_01379 PF06481 COX Aromatic Rich Motif LC20_01379 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LC20_01380 PF03502 Nucleoside-specific channel-forming protein, Tsx LC20_01381 PF07690 Major Facilitator Superfamily LC20_01382 PF03923 Uncharacterized lipoprotein LC20_01382 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LC20_01383 PF01722 BolA-like protein LC20_01385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LC20_01385 PF05697 Bacterial trigger factor protein (TF) LC20_01385 PF05698 Bacterial trigger factor protein (TF) C-terminus LC20_01387 PF00574 Clp protease LC20_01388 PF07724 AAA domain (Cdc48 subfamily) LC20_01388 PF10431 C-terminal, D2-small domain, of ClpB protein LC20_01388 PF06689 ClpX C4-type zinc finger LC20_01390 PF00004 ATPase family associated with various cellular activities (AAA) LC20_01390 PF05362 Lon protease (S16) C-terminal proteolytic domain LC20_01390 PF02190 ATP-dependent protease La (LON) substrate-binding domain LC20_01391 PF00216 Bacterial DNA-binding protein LC20_01393 PF13145 PPIC-type PPIASE domain LC20_01401 PF06508 Queuosine biosynthesis protein QueC LC20_01402 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_01402 PF12793 Sugar transport-related sRNA regulator N-term LC20_01405 PF13404 AsnC-type helix-turn-helix domain LC20_01405 PF01037 Lrp/AsnC ligand binding domain LC20_01406 PF00664 ABC transporter transmembrane region LC20_01406 PF00005 ABC transporter LC20_01407 PF00664 ABC transporter transmembrane region LC20_01407 PF00005 ABC transporter LC20_01408 PF00543 Nitrogen regulatory protein P-II LC20_01409 PF00909 Ammonium Transporter Family LC20_01412 PF09619 Type III secretion system lipoprotein chaperone (YscW) LC20_01413 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LC20_01415 PF11924 Inverse autotransporter, beta-domain LC20_01415 PF02369 Bacterial Ig-like domain (group 1) LC20_01415 PF09134 Invasin, domain 3 LC20_01418 PF05321 Haemolysin expression modulating protein LC20_01419 PF10757 Biofilm formation regulator YbaJ LC20_01423 PF00005 ABC transporter LC20_01424 PF00950 ABC 3 transport family LC20_01431 PF00444 Ribosomal protein L36 LC20_01432 PF01197 Ribosomal protein L31 LC20_01434 PF01676 Metalloenzyme superfamily LC20_01435 PF01168 Alanine racemase, N-terminal domain LC20_01437 PF00873 AcrB/AcrD/AcrF family LC20_01438 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_01438 PF00529 HlyD membrane-fusion protein of T1SS LC20_01439 PF08361 MAATS-type transcriptional repressor, C-terminal region LC20_01439 PF00440 Bacterial regulatory proteins, tetR family LC20_01440 PF02635 DsrE/DsrF-like family LC20_01443 PF10689 Protein of unknown function (DUF2496) LC20_01445 PF04304 Protein of unknown function (DUF454) LC20_01446 PF00156 Phosphoribosyl transferase domain LC20_01448 PF12169 DNA polymerase III subunits gamma and tau domain III LC20_01448 PF12170 DNA polymerase III tau subunit V interacting with alpha LC20_01448 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LC20_01449 PF02575 YbaB/EbfC DNA-binding family LC20_01450 PF13662 Toprim domain LC20_01450 PF02132 RecR protein LC20_01451 PF00183 Hsp90 protein LC20_01451 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_01452 PF05191 Adenylate kinase, active site lid LC20_01453 PF00762 Ferrochelatase LC20_01456 PF00535 Glycosyl transferase family 2 LC20_01456 PF01501 Glycosyl transferase family 8 LC20_01459 PF00534 Glycosyl transferases group 1 LC20_01459 PF13439 Glycosyltransferase Family 4 LC20_01460 PF00534 Glycosyl transferases group 1 LC20_01460 PF13439 Glycosyltransferase Family 4 LC20_01461 PF00953 Glycosyl transferase family 4 LC20_01462 PF02719 Polysaccharide biosynthesis protein LC20_01463 PF13439 Glycosyltransferase Family 4 LC20_01463 PF00534 Glycosyl transferases group 1 LC20_01464 PF16363 GDP-mannose 4,6 dehydratase LC20_01465 PF00294 pfkB family carbohydrate kinase LC20_01466 PF00999 Sodium/hydrogen exchanger family LC20_01466 PF02254 TrkA-N domain LC20_01468 PF07690 Major Facilitator Superfamily LC20_01470 PF00149 Calcineurin-like phosphoesterase LC20_01470 PF02872 5'-nucleotidase, C-terminal domain LC20_01474 PF01963 TraB family LC20_01475 PF00403 Heavy-metal-associated domain LC20_01476 PF13411 MerR HTH family regulatory protein LC20_01477 PF01957 NfeD-like C-terminal, partner-binding LC20_01478 PF16200 C-terminal region of band_7 LC20_01478 PF01145 SPFH domain / Band 7 family LC20_01479 PF00085 Thioredoxin LC20_01480 PF00106 short chain dehydrogenase LC20_01481 PF13472 GDSL-like Lipase/Acylhydrolase family LC20_01482 PF00005 ABC transporter LC20_01485 PF02222 ATP-grasp domain LC20_01485 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LC20_01487 PF00731 AIR carboxylase LC20_01488 PF00149 Calcineurin-like phosphoesterase LC20_01489 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LC20_01490 PF01406 tRNA synthetases class I (C) catalytic domain LC20_01490 PF09190 DALR domain LC20_01493 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LC20_01493 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LC20_01494 PF00589 Phage integrase family LC20_01504 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LC20_01520 PF01464 Transglycosylase SLT domain LC20_01524 PF01514 Secretory protein of YscJ/FliF family LC20_01526 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LC20_01530 PF07201 HrpJ-like domain LC20_01531 PF00771 FHIPEP family LC20_01533 PF18269 T3SS EscN ATPase C-terminal domain LC20_01533 PF02874 ATP synthase alpha/beta family, beta-barrel domain LC20_01533 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_01538 PF00813 FliP family LC20_01539 PF01313 Bacterial export proteins, family 3 LC20_01540 PF01311 Bacterial export proteins, family 1 LC20_01541 PF01312 FlhB HrpN YscU SpaS Family LC20_01542 PF07720 Tetratricopeptide repeat LC20_01543 PF16535 Type III cell invasion protein SipB LC20_01543 PF04888 Secretion system effector C (SseC) like family LC20_01545 PF06511 Type III secretion systems tip complex components LC20_01564 PF00550 Phosphopantetheine attachment site LC20_01575 PF09134 Invasin, domain 3 LC20_01575 PF07979 Intimin C-type lectin domain LC20_01575 PF11924 Inverse autotransporter, beta-domain LC20_01575 PF02369 Bacterial Ig-like domain (group 1) LC20_01579 PF00194 Eukaryotic-type carbonic anhydrase LC20_01584 PF08007 Cupin superfamily protein LC20_01585 PF00005 ABC transporter LC20_01585 PF00664 ABC transporter transmembrane region LC20_01589 PF03459 TOBE domain LC20_01591 PF00149 Calcineurin-like phosphoesterase LC20_01593 PF00196 Bacterial regulatory proteins, luxR family LC20_01594 PF00313 'Cold-shock' DNA-binding domain LC20_01595 PF00313 'Cold-shock' DNA-binding domain LC20_01597 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LC20_01598 PF05230 MASE2 domain LC20_01598 PF00990 Diguanylate cyclase, GGDEF domain LC20_01599 PF02416 mttA/Hcf106 family LC20_01600 PF04055 Radical SAM superfamily LC20_01600 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LC20_01601 PF03099 Biotin/lipoate A/B protein ligase family LC20_01602 PF04359 Protein of unknown function (DUF493) LC20_01603 PF07943 Penicillin-binding protein 5, C-terminal domain LC20_01603 PF00768 D-alanyl-D-alanine carboxypeptidase LC20_01604 PF05036 Sporulation related domain LC20_01604 PF03330 Lytic transglycolase LC20_01605 PF01098 Cell cycle protein LC20_01606 PF00905 Penicillin binding protein transpeptidase domain LC20_01606 PF03717 Penicillin-binding Protein dimerisation domain LC20_01607 PF02590 Predicted SPOUT methyltransferase LC20_01609 PF01467 Cytidylyltransferase-like LC20_01610 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LC20_01610 PF06144 DNA polymerase III, delta subunit LC20_01611 PF04390 Lipopolysaccharide-assembly LC20_01612 PF13603 Leucyl-tRNA synthetase, Domain 2 LC20_01612 PF00133 tRNA synthetases class I (I, L, M and V) LC20_01612 PF08264 Anticodon-binding domain of tRNA LC20_01614 PF07295 Zinc-ribbon containing domain LC20_01615 PF01156 Inosine-uridine preferring nucleoside hydrolase LC20_01616 PF00005 ABC transporter LC20_01617 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01619 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01620 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_01624 PF00795 Carbon-nitrogen hydrolase LC20_01625 PF03471 Transporter associated domain LC20_01625 PF00571 CBS domain LC20_01626 PF02130 Uncharacterized protein family UPF0054 LC20_01627 PF02562 PhoH-like protein LC20_01628 PF01938 TRAM domain LC20_01628 PF04055 Radical SAM superfamily LC20_01628 PF00919 Uncharacterized protein family UPF0004 LC20_01629 PF01494 FAD binding domain LC20_01632 PF13537 Glutamine amidotransferase domain LC20_01632 PF00733 Asparagine synthase LC20_01633 PF13344 Haloacid dehalogenase-like hydrolase LC20_01634 PF01047 MarR family LC20_01634 PF00480 ROK family LC20_01635 PF01979 Amidohydrolase family LC20_01636 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LC20_01637 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LC20_01637 PF02378 Phosphotransferase system, EIIC LC20_01637 PF00367 phosphotransferase system, EIIB LC20_01638 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LC20_01638 PF00749 tRNA synthetases class I (E and Q), catalytic domain LC20_01640 PF03573 outer membrane porin, OprD family LC20_01641 PF13982 YbfN-like lipoprotein LC20_01642 PF02838 Glycosyl hydrolase family 20, domain 2 LC20_01642 PF00728 Glycosyl hydrolase family 20, catalytic domain LC20_01642 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LC20_01642 PF03173 Putative carbohydrate binding domain LC20_01643 PF01475 Ferric uptake regulator family LC20_01644 PF00258 Flavodoxin LC20_01646 PF02203 Tar ligand binding domain homologue LC20_01646 PF00672 HAMP domain LC20_01646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_01649 PF12697 Alpha/beta hydrolase family LC20_01650 PF17206 SeqA protein N-terminal domain LC20_01650 PF03925 SeqA protein C-terminal domain LC20_01651 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LC20_01651 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LC20_01651 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LC20_01651 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LC20_01654 PF00072 Response regulator receiver domain LC20_01654 PF00486 Transcriptional regulatory protein, C terminal LC20_01655 PF02702 Osmosensitive K+ channel His kinase sensor domain LC20_01655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_01655 PF00512 His Kinase A (phospho-acceptor) domain LC20_01655 PF13492 GAF domain LC20_01655 PF13493 Domain of unknown function (DUF4118) LC20_01656 PF02669 K+-transporting ATPase, c chain LC20_01659 PF03814 Potassium-transporting ATPase A subunit LC20_01662 PF10725 Protein of unknown function (DUF2517) LC20_01663 PF08349 Protein of unknown function (DUF1722) LC20_01665 PF00875 DNA photolyase LC20_01665 PF03441 FAD binding domain of DNA photolyase LC20_01666 PF02112 cAMP phosphodiesterases class-II LC20_01667 PF01784 NIF3 (NGG1p interacting factor 3) LC20_01669 PF02682 Carboxyltransferase domain, subdomain C and D LC20_01670 PF02626 Carboxyltransferase domain, subdomain A and B LC20_01671 PF03746 LamB/YcsF family LC20_01674 PF01470 Pyroglutamyl peptidase LC20_01675 PF00285 Citrate synthase, C-terminal domain LC20_01678 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LC20_01679 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LC20_01680 PF00890 FAD binding domain LC20_01680 PF02910 Fumarate reductase flavoprotein C-term LC20_01681 PF13085 2Fe-2S iron-sulfur cluster binding domain LC20_01682 PF16078 2-oxoglutarate dehydrogenase N-terminus LC20_01682 PF00676 Dehydrogenase E1 component LC20_01682 PF16870 2-oxoglutarate dehydrogenase C-terminal LC20_01682 PF02779 Transketolase, pyrimidine binding domain LC20_01683 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LC20_01683 PF00364 Biotin-requiring enzyme LC20_01683 PF02817 e3 binding domain LC20_01684 PF00549 CoA-ligase LC20_01684 PF08442 ATP-grasp domain LC20_01685 PF00549 CoA-ligase LC20_01685 PF02629 CoA binding domain LC20_01686 PF00149 Calcineurin-like phosphoesterase LC20_01686 PF02872 5'-nucleotidase, C-terminal domain LC20_01688 PF01654 Cytochrome bd terminal oxidase subunit I LC20_01689 PF02322 Cytochrome bd terminal oxidase subunit II LC20_01690 PF08173 Membrane bound YbgT-like protein LC20_01692 PF03061 Thioesterase superfamily LC20_01693 PF01618 MotA/TolQ/ExbB proton channel family LC20_01694 PF02472 Biopolymer transport protein ExbD/TolR LC20_01695 PF06519 TolA C-terminal LC20_01695 PF06519 TolA C-terminal LC20_01696 PF04052 TolB amino-terminal domain LC20_01696 PF07676 WD40-like Beta Propeller Repeat LC20_01697 PF00691 OmpA family LC20_01698 PF16331 TolA binding protein trimerisation LC20_01698 PF13174 Tetratricopeptide repeat LC20_01699 PF02445 Quinolinate synthetase A protein LC20_01700 PF04973 Nicotinamide mononucleotide transporter LC20_01701 PF01545 Cation efflux family LC20_01702 PF00793 DAHP synthetase I family LC20_01703 PF00300 Histidine phosphatase superfamily (branch 1) LC20_01705 PF01263 Aldose 1-epimerase LC20_01706 PF10509 Galactokinase galactose-binding signature LC20_01706 PF08544 GHMP kinases C terminal LC20_01706 PF00288 GHMP kinases N terminal domain LC20_01707 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LC20_01707 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LC20_01708 PF16363 GDP-mannose 4,6 dehydratase LC20_01710 PF00005 ABC transporter LC20_01711 PF03459 TOBE domain LC20_01711 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01712 PF10766 Multidrug efflux pump-associated protein AcrZ LC20_01714 PF00589 Phage integrase family LC20_01714 PF13356 Arm DNA-binding domain LC20_01730 PF01695 IstB-like ATP binding protein LC20_01731 PF03796 DnaB-like helicase C terminal domain LC20_01731 PF00772 DnaB-like helicase N terminal domain LC20_01739 PF00182 Chitinase class I LC20_01757 PF04984 Phage tail sheath protein subtilisin-like domain LC20_01757 PF17482 Phage tail sheath C-terminal domain LC20_01771 PF13091 PLD-like domain LC20_01774 PF06183 DinI-like family LC20_01775 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01776 PF03459 TOBE domain LC20_01776 PF00005 ABC transporter LC20_01780 PF03797 Autotransporter beta-domain LC20_01781 PF10282 Lactonase, 7-bladed beta-propeller LC20_01784 PF04055 Radical SAM superfamily LC20_01784 PF06968 Biotin and Thiamin Synthesis associated domain LC20_01785 PF00155 Aminotransferase class I and II LC20_01786 PF08241 Methyltransferase domain LC20_01788 PF00005 ABC transporter LC20_01790 PF17757 UvrB interaction domain LC20_01790 PF12344 Ultra-violet resistance protein B LC20_01790 PF02151 UvrB/uvrC motif LC20_01790 PF04851 Type III restriction enzyme, res subunit LC20_01790 PF00271 Helicase conserved C-terminal domain LC20_01791 PF09905 DNA-binding protein VF530 LC20_01792 PF01933 Uncharacterised protein family UPF0052 LC20_01793 PF06463 Molybdenum Cofactor Synthesis C LC20_01793 PF04055 Radical SAM superfamily LC20_01794 PF01967 MoaC family LC20_01795 PF02597 ThiS family LC20_01796 PF02391 MoaE protein LC20_01797 PF01027 Inhibitor of apoptosis-promoting Bax1 LC20_01800 PF00005 ABC transporter LC20_01801 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_01802 PF09209 Tetracyclin repressor-like, C-terminal domain LC20_01802 PF00440 Bacterial regulatory proteins, tetR family LC20_01803 PF00271 Helicase conserved C-terminal domain LC20_01803 PF00270 DEAD/DEAH box helicase LC20_01836 PF00768 D-alanyl-D-alanine carboxypeptidase LC20_01837 PF01565 FAD binding domain LC20_01837 PF09330 D-lactate dehydrogenase, membrane binding LC20_01838 PF01928 CYTH domain LC20_01841 PF04226 Transglycosylase associated protein LC20_01842 PF00005 ABC transporter LC20_01846 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01848 PF07308 Protein of unknown function (DUF1456) LC20_01850 PF02653 Branched-chain amino acid transport system / permease component LC20_01853 PF00005 ABC transporter LC20_01854 PF00005 ABC transporter LC20_01855 PF00581 Rhodanese-like domain LC20_01856 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LC20_01856 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_01862 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01863 PF00005 ABC transporter LC20_01864 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01868 PF00892 EamA-like transporter family LC20_01871 PF00267 Gram-negative porin LC20_01874 PF06733 DEAD_2 LC20_01874 PF13307 Helicase C-terminal domain LC20_01876 PF00230 Major intrinsic protein LC20_01878 PF02885 Glycosyl transferase family, helical bundle domain LC20_01882 PF01613 Flavin reductase like domain LC20_01883 PF05971 RNA methyltransferase LC20_01884 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_01884 PF13426 PAS domain LC20_01884 PF08447 PAS fold LC20_01885 PF00005 ABC transporter LC20_01886 PF00528 Binding-protein-dependent transport system inner membrane component LC20_01887 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_01889 PF01258 Prokaryotic dksA/traR C4-type zinc finger LC20_01890 PF00210 Ferritin-like domain LC20_01891 PF13847 Methyltransferase domain LC20_01894 PF02469 Fasciclin domain LC20_01898 PF13505 Outer membrane protein beta-barrel domain LC20_01903 PF00005 ABC transporter LC20_01903 PF12848 ABC transporter LC20_01904 PF18416 N-acetylglucosamine binding protein domain 2 LC20_01904 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LC20_01905 PF00899 ThiF family LC20_01906 PF00994 Probable molybdopterin binding domain LC20_01906 PF03454 MoeA C-terminal region (domain IV) LC20_01906 PF03453 MoeA N-terminal region (domain I and II) LC20_01909 PF00083 Sugar (and other) transporter LC20_01910 PF02687 FtsX-like permease family LC20_01910 PF12704 MacB-like periplasmic core domain LC20_01910 PF00005 ABC transporter LC20_01914 PF00756 Putative esterase LC20_01917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_01917 PF03466 LysR substrate binding domain LC20_01919 PF06779 Uncharacterised MFS-type transporter YbfB LC20_01920 PF01227 GTP cyclohydrolase I LC20_01922 PF04235 Protein of unknown function (DUF418) LC20_01923 PF00356 Bacterial regulatory proteins, lacI family LC20_01924 PF13407 Periplasmic binding protein domain LC20_01926 PF00005 ABC transporter LC20_01927 PF02653 Branched-chain amino acid transport system / permease component LC20_01930 PF01590 GAF domain LC20_01930 PF02954 Bacterial regulatory protein, Fis family LC20_01930 PF00158 Sigma-54 interaction domain LC20_01931 PF01568 Molydopterin dinucleotide binding domain LC20_01931 PF00384 Molybdopterin oxidoreductase LC20_01931 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_01932 PF12800 4Fe-4S binding domain LC20_01932 PF13247 4Fe-4S dicluster domain LC20_01933 PF01750 Hydrogenase maturation protease LC20_01934 PF07450 Formate hydrogenlyase maturation protein HycH LC20_01935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LC20_01936 PF12838 4Fe-4S dicluster domain LC20_01937 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LC20_01937 PF00374 Nickel-dependent hydrogenase LC20_01937 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LC20_01938 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LC20_01938 PF00361 Proton-conducting membrane transporter LC20_01939 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LC20_01940 PF00361 Proton-conducting membrane transporter LC20_01940 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LC20_01941 PF00146 NADH dehydrogenase LC20_01942 PF00361 Proton-conducting membrane transporter LC20_01943 PF12798 4Fe-4S binding domain LC20_01943 PF00037 4Fe-4S binding domain LC20_01945 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LC20_01946 PF01455 HupF/HypC family LC20_01948 PF02698 DUF218 domain LC20_01950 PF00390 Malic enzyme, N-terminal domain LC20_01950 PF03949 Malic enzyme, NAD binding domain LC20_01952 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LC20_01952 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LC20_01953 PF04172 LrgB-like family LC20_01954 PF03788 LrgA family LC20_01955 PF07690 Major Facilitator Superfamily LC20_01961 PF01588 Putative tRNA binding domain LC20_01961 PF09334 tRNA synthetases class I (M) LC20_01962 PF10609 NUBPL iron-transfer P-loop NTPase LC20_01963 PF00485 Phosphoribulokinase / Uridine kinase family LC20_01964 PF00692 dUTPase LC20_01965 PF05170 AsmA family LC20_01966 PF03606 C4-dicarboxylate anaerobic carrier LC20_01970 PF03471 Transporter associated domain LC20_01970 PF03741 Integral membrane protein TerC family LC20_01970 PF00571 CBS domain LC20_01971 PF01050 Mannose-6-phosphate isomerase LC20_01971 PF00483 Nucleotidyl transferase LC20_01972 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LC20_01972 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LC20_01972 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LC20_01972 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LC20_01974 PF00005 ABC transporter LC20_01980 PF16363 GDP-mannose 4,6 dehydratase LC20_01981 PF16363 GDP-mannose 4,6 dehydratase LC20_01985 PF00483 Nucleotidyl transferase LC20_01986 PF00483 Nucleotidyl transferase LC20_01987 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LC20_01987 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LC20_01988 PF01502 Phosphoribosyl-AMP cyclohydrolase LC20_01988 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LC20_01989 PF00977 Histidine biosynthesis protein LC20_01990 PF00977 Histidine biosynthesis protein LC20_01991 PF00117 Glutamine amidotransferase class-I LC20_01992 PF00475 Imidazoleglycerol-phosphate dehydratase LC20_01993 PF00155 Aminotransferase class I and II LC20_01994 PF00815 Histidinol dehydrogenase LC20_01995 PF01634 ATP phosphoribosyltransferase LC20_01995 PF08029 HisG, C-terminal domain LC20_01996 PF01370 NAD dependent epimerase/dehydratase family LC20_01997 PF02653 Branched-chain amino acid transport system / permease component LC20_02001 PF00465 Iron-containing alcohol dehydrogenase LC20_02002 PF13520 Amino acid permease LC20_02003 PF08411 Exonuclease C-terminal LC20_02003 PF00929 Exonuclease LC20_02004 PF00550 Phosphopantetheine attachment site LC20_02004 PF07993 Male sterility protein LC20_02004 PF00501 AMP-binding enzyme LC20_02008 PF04363 Protein of unknown function (DUF496) LC20_02009 PF02653 Branched-chain amino acid transport system / permease component LC20_02010 PF02653 Branched-chain amino acid transport system / permease component LC20_02012 PF13407 Periplasmic binding protein domain LC20_02014 PF00288 GHMP kinases N terminal domain LC20_02015 PF00155 Aminotransferase class I and II LC20_02016 PF10414 Sirohaem synthase dimerisation region LC20_02016 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_02016 PF14824 Sirohaem biosynthesis protein central LC20_02019 PF10662 Ethanolamine utilisation - propanediol utilisation LC20_02020 PF00936 BMC domain LC20_02022 PF13375 RnfC Barrel sandwich hybrid domain LC20_02022 PF10531 SLBB domain LC20_02022 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LC20_02022 PF13237 4Fe-4S dicluster domain LC20_02023 PF18427 DD-reactivating factor swiveling domain LC20_02023 PF08841 Diol dehydratase reactivase ATPase-like domain LC20_02024 PF02287 Dehydratase small subunit LC20_02025 PF02288 Dehydratase medium subunit LC20_02026 PF02286 Dehydratase large subunit LC20_02027 PF00936 BMC domain LC20_02028 PF00936 BMC domain LC20_02030 PF00230 Major intrinsic protein LC20_02031 PF12833 Helix-turn-helix domain LC20_02031 PF10114 Sensory domain found in PocR LC20_02034 PF03186 CobD/Cbib protein LC20_02035 PF02570 Precorrin-8X methylmutase LC20_02036 PF01888 CbiD LC20_02037 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_02038 PF05175 Methyltransferase small domain LC20_02039 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_02040 PF01890 Cobalamin synthesis G C-terminus LC20_02040 PF11761 Cobalamin biosynthesis central region LC20_02040 PF11760 Cobalamin synthesis G N-terminal LC20_02041 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_02042 PF02571 Precorrin-6x reductase CbiJ/CobK LC20_02043 PF06180 Cobalt chelatase (CbiK) LC20_02044 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_02045 PF01891 Cobalt uptake substrate-specific transmembrane region LC20_02046 PF02553 Cobalt transport protein component CbiN LC20_02049 PF00005 ABC transporter LC20_02050 PF07685 CobB/CobQ-like glutamine amidotransferase domain LC20_02051 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LC20_02053 PF02654 Cobalamin-5-phosphate synthase LC20_02054 PF00300 Histidine phosphatase superfamily (branch 1) LC20_02055 PF02277 Phosphoribosyltransferase LC20_02056 PF00764 Arginosuccinate synthase LC20_02057 PF01554 MatE LC20_02058 PF00072 Response regulator receiver domain LC20_02058 PF01584 CheW-like domain LC20_02059 PF00005 ABC transporter LC20_02059 PF08402 TOBE domain LC20_02061 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02063 PF07690 Major Facilitator Superfamily LC20_02064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02064 PF07730 Histidine kinase LC20_02064 PF05231 MASE1 LC20_02065 PF00072 Response regulator receiver domain LC20_02065 PF00196 Bacterial regulatory proteins, luxR family LC20_02066 PF00072 Response regulator receiver domain LC20_02066 PF12431 Transcriptional regulator LC20_02067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02067 PF17203 Single cache domain 3 LC20_02067 PF00989 PAS fold LC20_02067 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LC20_02069 PF08218 Citrate lyase ligase C-terminal domain LC20_02070 PF06857 Malonate decarboxylase delta subunit (MdcD) LC20_02071 PF03328 HpcH/HpaI aldolase/citrate lyase family LC20_02072 PF04223 Citrate lyase, alpha subunit (CitF) LC20_02073 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LC20_02073 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LC20_02074 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LC20_02075 PF00939 Sodium:sulfate symporter transmembrane region LC20_02076 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LC20_02078 PF03480 Bacterial extracellular solute-binding protein, family 7 LC20_02079 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LC20_02079 PF01648 4'-phosphopantetheinyl transferase superfamily LC20_02088 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_02088 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_02096 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_02096 PF01627 Hpt domain LC20_02096 PF00989 PAS fold LC20_02096 PF00072 Response regulator receiver domain LC20_02096 PF00512 His Kinase A (phospho-acceptor) domain LC20_02096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02099 PF00072 Response regulator receiver domain LC20_02099 PF00196 Bacterial regulatory proteins, luxR family LC20_02101 PF06167 Glucose-regulated metallo-peptidase M90 LC20_02104 PF01066 CDP-alcohol phosphatidyltransferase LC20_02107 PF12147 Putative methyltransferase LC20_02107 PF12146 Serine aminopeptidase, S33 LC20_02109 PF00782 Dual specificity phosphatase, catalytic domain LC20_02111 PF00483 Nucleotidyl transferase LC20_02112 PF00328 Histidine phosphatase superfamily (branch 2) LC20_02113 PF14001 YdfZ protein LC20_02116 PF01037 Lrp/AsnC ligand binding domain LC20_02117 PF10777 Inner membrane protein YlaC LC20_02119 PF00107 Zinc-binding dehydrogenase LC20_02119 PF08240 Alcohol dehydrogenase GroES-like domain LC20_02119 PF02801 Beta-ketoacyl synthase, C-terminal domain LC20_02119 PF16197 Ketoacyl-synthetase C-terminal extension LC20_02119 PF00550 Phosphopantetheine attachment site LC20_02119 PF08659 KR domain LC20_02119 PF00698 Acyl transferase domain LC20_02119 PF14765 Polyketide synthase dehydratase LC20_02119 PF00109 Beta-ketoacyl synthase, N-terminal domain LC20_02120 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LC20_02120 PF02837 Glycosyl hydrolases family 2, sugar binding domain LC20_02120 PF00703 Glycosyl hydrolases family 2 LC20_02120 PF02929 Beta galactosidase small chain LC20_02120 PF16353 Domain of unknown function(DUF4981) LC20_02122 PF00356 Bacterial regulatory proteins, lacI family LC20_02123 PF10781 Dextransucrase DSRB LC20_02125 PF00672 HAMP domain LC20_02125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_02125 PF02203 Tar ligand binding domain homologue LC20_02128 PF02308 MgtC family LC20_02129 PF00690 Cation transporter/ATPase, N-terminus LC20_02129 PF00689 Cation transporting ATPase, C-terminus LC20_02131 PF00582 Universal stress protein family LC20_02132 PF05247 Flagellar transcriptional activator (FlhD) LC20_02133 PF05280 Flagellar transcriptional activator (FlhC) LC20_02134 PF01618 MotA/TolQ/ExbB proton channel family LC20_02135 PF00691 OmpA family LC20_02135 PF13677 Membrane MotB of proton-channel complex MotA/MotB LC20_02136 PF01627 Hpt domain LC20_02136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02136 PF02895 Signal transducing histidine kinase, homodimeric domain LC20_02136 PF09078 CheY binding LC20_02136 PF01584 CheW-like domain LC20_02137 PF01584 CheW-like domain LC20_02139 PF02203 Tar ligand binding domain homologue LC20_02139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_02139 PF00672 HAMP domain LC20_02140 PF02203 Tar ligand binding domain homologue LC20_02140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_02140 PF00672 HAMP domain LC20_02141 PF01739 CheR methyltransferase, SAM binding domain LC20_02141 PF03705 CheR methyltransferase, all-alpha domain LC20_02144 PF00072 Response regulator receiver domain LC20_02145 PF04344 Chemotaxis phosphatase, CheZ LC20_02146 PF01312 FlhB HrpN YscU SpaS Family LC20_02147 PF00771 FHIPEP family LC20_02148 PF06366 Flagellar protein FlhE LC20_02152 PF05130 FlgN protein LC20_02153 PF04316 Anti-sigma-28 factor, FlgM LC20_02155 PF17656 FlgA N-terminal domain LC20_02155 PF13144 Chaperone for flagella basal body P-ring formation LC20_02156 PF00460 Flagella basal body rod protein LC20_02157 PF00460 Flagella basal body rod protein LC20_02157 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LC20_02158 PF03963 Flagellar hook capping protein - N-terminal region LC20_02158 PF13860 FlgD Ig-like domain LC20_02158 PF13861 FlgD Tudor-like domain LC20_02159 PF00460 Flagella basal body rod protein LC20_02159 PF07559 Flagellar basal body protein FlaE LC20_02159 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LC20_02161 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LC20_02161 PF00460 Flagella basal body rod protein LC20_02162 PF00460 Flagella basal body rod protein LC20_02162 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LC20_02163 PF02107 Flagellar L-ring protein LC20_02164 PF02119 Flagellar P-ring protein LC20_02166 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LC20_02166 PF00460 Flagella basal body rod protein LC20_02167 PF00669 Bacterial flagellin N-terminal helical region LC20_02168 PF01311 Bacterial export proteins, family 1 LC20_02169 PF01313 Bacterial export proteins, family 3 LC20_02170 PF00813 FliP family LC20_02171 PF04347 Flagellar biosynthesis protein, FliO LC20_02172 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LC20_02172 PF16973 Flagellar motor switch protein FliN N-terminal LC20_02173 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LC20_02173 PF02154 Flagellar motor switch protein FliM LC20_02174 PF03748 Flagellar basal body-associated protein FliL LC20_02177 PF02050 Flagellar FliJ protein LC20_02178 PF18269 T3SS EscN ATPase C-terminal domain LC20_02178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_02179 PF02108 Flagellar assembly protein FliH LC20_02180 PF14842 FliG N-terminal domain LC20_02180 PF14841 FliG middle domain LC20_02180 PF01706 FliG C-terminal domain LC20_02181 PF01514 Secretory protein of YscJ/FliF family LC20_02181 PF08345 Flagellar M-ring protein C-terminal LC20_02183 PF02049 Flagellar hook-basal body complex protein FliE LC20_02188 PF01966 HD domain LC20_02192 PF05400 Flagellar protein FliT LC20_02193 PF02561 Flagellar protein FliS LC20_02194 PF07196 Flagellin hook IN motif LC20_02194 PF02465 Flagellar hook-associated protein 2 N-terminus LC20_02194 PF07195 Flagellar hook-associated protein 2 C-terminus LC20_02196 PF00700 Bacterial flagellin C-terminal helical region LC20_02196 PF00669 Bacterial flagellin N-terminal helical region LC20_02197 PF04542 Sigma-70 region 2 LC20_02197 PF04539 Sigma-70 region 3 LC20_02197 PF04545 Sigma-70, region 4 LC20_02198 PF02899 Phage integrase, N-terminal SAM-like domain LC20_02201 PF00291 Pyridoxal-phosphate dependent enzyme LC20_02208 PF14850 DNA-binding domain of Proline dehydrogenase LC20_02208 PF01619 Proline dehydrogenase LC20_02208 PF00171 Aldehyde dehydrogenase family LC20_02208 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LC20_02209 PF00474 Sodium:solute symporter family LC20_02210 PF03239 Iron permease FTR1 family LC20_02211 PF13473 Cupredoxin-like domain LC20_02211 PF09375 Imelysin LC20_02215 PF03358 NADPH-dependent FMN reductase LC20_02221 PF01161 Phosphatidylethanolamine-binding protein LC20_02223 PF00324 Amino acid permease LC20_02227 PF08241 Methyltransferase domain LC20_02230 PF02806 Alpha amylase, C-terminal all-beta domain LC20_02230 PF00128 Alpha amylase, catalytic domain LC20_02233 PF10769 Protein of unknown function (DUF2594) LC20_02235 PF00072 Response regulator receiver domain LC20_02235 PF00196 Bacterial regulatory proteins, luxR family LC20_02237 PF02151 UvrB/uvrC motif LC20_02237 PF08459 UvrC Helix-hairpin-helix N-terminal LC20_02237 PF01541 GIY-YIG catalytic domain LC20_02238 PF01066 CDP-alcohol phosphatidyltransferase LC20_02249 PF01381 Helix-turn-helix LC20_02249 PF00717 Peptidase S24-like LC20_02254 PF03796 DnaB-like helicase C terminal domain LC20_02254 PF00772 DnaB-like helicase N terminal domain LC20_02261 PF07102 Protein of unknown function (DUF1364) LC20_02262 PF06530 Phage antitermination protein Q LC20_02263 PF03477 ATP cone domain LC20_02263 PF02867 Ribonucleotide reductase, barrel domain LC20_02263 PF00317 Ribonucleotide reductase, all-alpha domain LC20_02266 PF00959 Phage lysozyme LC20_02271 PF03797 Autotransporter beta-domain LC20_02290 PF00583 Acetyltransferase (GNAT) family LC20_02297 PF07690 Major Facilitator Superfamily LC20_02299 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LC20_02301 PF00324 Amino acid permease LC20_02304 PF03390 2-hydroxycarboxylate transporter family LC20_02305 PF00072 Response regulator receiver domain LC20_02306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02306 PF00989 PAS fold LC20_02306 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LC20_02306 PF17203 Single cache domain 3 LC20_02307 PF00455 DeoR C terminal sensor domain LC20_02307 PF08220 DeoR-like helix-turn-helix domain LC20_02308 PF07005 Sugar-binding N-terminal domain LC20_02308 PF17042 Nucleotide-binding C-terminal domain LC20_02309 PF00596 Class II Aldolase and Adducin N-terminal domain LC20_02310 PF01261 Xylose isomerase-like TIM barrel LC20_02311 PF04960 Glutaminase LC20_02313 PF01804 Penicillin amidase LC20_02315 PF03239 Iron permease FTR1 family LC20_02319 PF00578 AhpC/TSA family LC20_02324 PF00557 Metallopeptidase family M24 LC20_02327 PF01522 Polysaccharide deacetylase LC20_02327 PF14883 Hypothetical glycosyl hydrolase family 13 LC20_02328 PF00535 Glycosyl transferase family 2 LC20_02329 PF13994 PgaD-like protein LC20_02332 PF02562 PhoH-like protein LC20_02333 PF01699 Sodium/calcium exchanger protein LC20_02336 PF03466 LysR substrate binding domain LC20_02336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02337 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LC20_02337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02337 PF07730 Histidine kinase LC20_02337 PF00672 HAMP domain LC20_02340 PF02322 Cytochrome bd terminal oxidase subunit II LC20_02341 PF01654 Cytochrome bd terminal oxidase subunit I LC20_02343 PF00392 Bacterial regulatory proteins, gntR family LC20_02343 PF00155 Aminotransferase class I and II LC20_02349 PF04996 Succinylarginine dihydrolase LC20_02350 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LC20_02352 PF00267 Gram-negative porin LC20_02354 PF01979 Amidohydrolase family LC20_02357 PF00392 Bacterial regulatory proteins, gntR family LC20_02357 PF07702 UTRA domain LC20_02358 PF01979 Amidohydrolase family LC20_02359 PF05962 HutD LC20_02360 PF13407 Periplasmic binding protein domain LC20_02364 PF02653 Branched-chain amino acid transport system / permease component LC20_02365 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LC20_02367 PF01551 Peptidase family M23 LC20_02367 PF01476 LysM domain LC20_02370 PF01116 Fructose-bisphosphate aldolase class-II LC20_02371 PF01380 SIS domain LC20_02374 PF03613 PTS system mannose/fructose/sorbose family IID component LC20_02375 PF03609 PTS system sorbose-specific iic component LC20_02376 PF03830 PTS system sorbose subfamily IIB component LC20_02377 PF08013 Tagatose 6 phosphate kinase LC20_02379 PF00455 DeoR C terminal sensor domain LC20_02379 PF08220 DeoR-like helix-turn-helix domain LC20_02381 PF03797 Autotransporter beta-domain LC20_02386 PF01926 50S ribosome-binding GTPase LC20_02386 PF06071 Protein of unknown function (DUF933) LC20_02388 PF01195 Peptidyl-tRNA hydrolase LC20_02390 PF10762 Protein of unknown function (DUF2583) LC20_02392 PF14572 Phosphoribosyl synthetase-associated domain LC20_02392 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LC20_02394 PF03550 Outer membrane lipoprotein LolB LC20_02395 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LC20_02395 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LC20_02395 PF01488 Shikimate / quinate 5-dehydrogenase LC20_02396 PF00472 RF-1 domain LC20_02396 PF03462 PCRF domain LC20_02397 PF13847 Methyltransferase domain LC20_02397 PF17827 PrmC N-terminal domain LC20_02398 PF04247 Invasion gene expression up-regulator, SirB LC20_02399 PF13369 Transglutaminase-like superfamily LC20_02400 PF00793 DAHP synthetase I family LC20_02401 PF01740 STAS domain LC20_02401 PF00916 Sulfate permease family LC20_02402 PF03009 Glycerophosphoryl diester phosphodiesterase family LC20_02404 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_02405 PF02811 PHP domain LC20_02406 PF02613 Nitrate reductase delta subunit LC20_02407 PF07273 Protein of unknown function (DUF1439) LC20_02409 PF07690 Major Facilitator Superfamily LC20_02413 PF13302 Acetyltransferase (GNAT) domain LC20_02414 PF04337 Protein of unknown function, DUF480 LC20_02416 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_02421 PF03023 Lipid II flippase MurJ LC20_02422 PF05746 DALR anticodon binding domain LC20_02422 PF00750 tRNA synthetases class I (R) LC20_02422 PF03485 Arginyl tRNA synthetase N terminal domain LC20_02425 PF06185 YecM protein LC20_02431 PF08003 Protein of unknown function (DUF1698) LC20_02432 PF13649 Methyltransferase domain LC20_02433 PF01124 MAPEG family LC20_02434 PF01904 Protein of unknown function DUF72 LC20_02435 PF00857 Isochorismatase family LC20_02439 PF01336 OB-fold nucleic acid binding domain LC20_02439 PF00152 tRNA synthetases class II (D, K and N) LC20_02439 PF02938 GAD domain LC20_02441 PF00293 NUDIX domain LC20_02442 PF01709 Transcriptional regulator LC20_02445 PF01330 RuvA N terminal domain LC20_02445 PF07499 RuvA, C-terminal domain LC20_02446 PF17864 RuvB AAA lid domain LC20_02446 PF05491 RuvB C-terminal winged helix domain LC20_02446 PF05496 Holliday junction DNA helicase RuvB P-loop domain LC20_02447 PF00854 POT family LC20_02448 PF00950 ABC 3 transport family LC20_02449 PF00005 ABC transporter LC20_02452 PF01476 LysM domain LC20_02452 PF01551 Peptidase family M23 LC20_02452 PF08525 Opacity-associated protein A N-terminal motif LC20_02453 PF03279 Bacterial lipid A biosynthesis acyltransferase LC20_02454 PF02887 Pyruvate kinase, alpha/beta domain LC20_02454 PF00224 Pyruvate kinase, barrel domain LC20_02455 PF01380 SIS domain LC20_02455 PF01418 Helix-turn-helix domain, rpiR family LC20_02456 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LC20_02456 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LC20_02458 PF01081 KDPG and KHG aldolase LC20_02460 PF00893 Small Multidrug Resistance protein LC20_02461 PF00893 Small Multidrug Resistance protein LC20_02462 PF01042 Endoribonuclease L-PSP LC20_02463 PF04851 Type III restriction enzyme, res subunit LC20_02463 PF13307 Helicase C-terminal domain LC20_02464 PF00814 Glycoprotease family LC20_02470 PF13193 AMP-binding enzyme C-terminal domain LC20_02470 PF00501 AMP-binding enzyme LC20_02471 PF00570 HRDC domain LC20_02471 PF01612 3'-5' exonuclease LC20_02476 PF03776 Septum formation topological specificity factor MinE LC20_02478 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LC20_02479 PF03775 Septum formation inhibitor MinC, C-terminal domain LC20_02479 PF05209 Septum formation inhibitor MinC, N-terminal domain LC20_02482 PF05166 YcgL domain LC20_02484 PF13406 Transglycosylase SLT domain LC20_02485 PF01557 Fumarylacetoacetate (FAA) hydrolase family LC20_02486 PF03692 Putative zinc- or iron-chelating domain LC20_02490 PF03797 Autotransporter beta-domain LC20_02493 PF02600 Disulfide bond formation protein DsbB LC20_02497 PF07840 FadR C-terminal domain LC20_02497 PF00392 Bacterial regulatory proteins, gntR family LC20_02498 PF04293 SpoVR like protein LC20_02500 PF01266 FAD dependent oxidoreductase LC20_02502 PF01168 Alanine racemase, N-terminal domain LC20_02502 PF00842 Alanine racemase, C-terminal domain LC20_02503 PF07690 Major Facilitator Superfamily LC20_02504 PF13426 PAS domain LC20_02504 PF00990 Diguanylate cyclase, GGDEF domain LC20_02504 PF00563 EAL domain LC20_02507 PF05726 Pirin C-terminal cupin domain LC20_02507 PF02678 Pirin LC20_02508 PF03466 LysR substrate binding domain LC20_02508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02512 PF08298 PrkA AAA domain LC20_02512 PF06798 PrkA serine protein kinase C-terminal domain LC20_02514 PF06629 MltA-interacting protein MipA LC20_02515 PF01263 Aldose 1-epimerase LC20_02517 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LC20_02517 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LC20_02519 PF01641 SelR domain LC20_02520 PF07023 Protein of unknown function (DUF1315) LC20_02523 PF17763 Glutaminase/Asparaginase C-terminal domain LC20_02523 PF00710 Asparaginase, N-terminal LC20_02524 PF01343 Peptidase family S49 LC20_02525 PF00881 Nitroreductase family LC20_02528 PF01751 Toprim domain LC20_02528 PF01131 DNA topoisomerase LC20_02529 PF07383 Protein of unknown function (DUF1496) LC20_02530 PF00293 NUDIX domain LC20_02533 PF03466 LysR substrate binding domain LC20_02533 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02534 PF00551 Formyl transferase LC20_02534 PF01842 ACT domain LC20_02535 PF02810 SEC-C motif LC20_02536 PF01734 Patatin-like phospholipase LC20_02537 PF00072 Response regulator receiver domain LC20_02538 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LC20_02538 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LC20_02538 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LC20_02539 PF00816 H-NS histone family LC20_02540 PF00265 Thymidine kinase LC20_02542 PF00171 Aldehyde dehydrogenase family LC20_02542 PF00465 Iron-containing alcohol dehydrogenase LC20_02545 PF01914 MarC family integral membrane protein LC20_02549 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_02550 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02553 PF00005 ABC transporter LC20_02553 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_02554 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_02554 PF00005 ABC transporter LC20_02555 PF04269 Protein of unknown function, DUF440 LC20_02556 PF13396 Phospholipase_D-nuclease N-terminal LC20_02556 PF13091 PLD-like domain LC20_02562 PF03795 YCII-related domain LC20_02563 PF03544 Gram-negative bacterial TonB protein C-terminal LC20_02564 PF03061 Thioesterase superfamily LC20_02565 PF04279 Intracellular septation protein A LC20_02568 PF03692 Putative zinc- or iron-chelating domain LC20_02569 PF03922 OmpW family LC20_02571 PF00290 Tryptophan synthase alpha chain LC20_02572 PF00291 Pyridoxal-phosphate dependent enzyme LC20_02573 PF00218 Indole-3-glycerol phosphate synthase LC20_02573 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LC20_02574 PF02885 Glycosyl transferase family, helical bundle domain LC20_02574 PF00591 Glycosyl transferase family, a/b domain LC20_02575 PF00117 Glutamine amidotransferase class-I LC20_02576 PF00425 chorismate binding enzyme LC20_02576 PF04715 Anthranilate synthase component I, N terminal region LC20_02579 PF02811 PHP domain LC20_02580 PF01300 Telomere recombination LC20_02583 PF03797 Autotransporter beta-domain LC20_02585 PF00072 Response regulator receiver domain LC20_02585 PF00196 Bacterial regulatory proteins, luxR family LC20_02588 PF02369 Bacterial Ig-like domain (group 1) LC20_02588 PF11924 Inverse autotransporter, beta-domain LC20_02588 PF09134 Invasin, domain 3 LC20_02593 PF00239 Resolvase, N terminal domain LC20_02593 PF02796 Helix-turn-helix domain of resolvase LC20_02602 PF00849 RNA pseudouridylate synthase LC20_02602 PF01479 S4 domain LC20_02603 PF12557 Cob(I)alamin adenosyltransferase N terminal LC20_02603 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LC20_02604 PF00106 short chain dehydrogenase LC20_02605 PF08496 Peptidase family S49 N-terminal LC20_02605 PF01343 Peptidase family S49 LC20_02606 PF10692 Protein of unknown function (DUF2498) LC20_02607 PF01396 Topoisomerase DNA binding C4 zinc finger LC20_02607 PF08272 Topoisomerase I zinc-ribbon-like LC20_02607 PF01131 DNA topoisomerase LC20_02607 PF01751 Toprim domain LC20_02609 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02609 PF03466 LysR substrate binding domain LC20_02621 PF00925 GTP cyclohydrolase II LC20_02624 PF06305 Lipopolysaccharide assembly protein A domain LC20_02625 PF18073 Rubredoxin metal binding domain LC20_02629 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LC20_02631 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_02631 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LC20_02633 PF00239 Resolvase, N terminal domain LC20_02633 PF02796 Helix-turn-helix domain of resolvase LC20_02636 PF01381 Helix-turn-helix LC20_02636 PF07883 Cupin domain LC20_02637 PF03594 Benzoate membrane transport protein LC20_02638 PF07338 Protein of unknown function (DUF1471) LC20_02641 PF01253 Translation initiation factor SUI1 LC20_02644 PF05433 Glycine zipper 2TM domain LC20_02645 PF00596 Class II Aldolase and Adducin N-terminal domain LC20_02647 PF00455 DeoR C terminal sensor domain LC20_02647 PF08220 DeoR-like helix-turn-helix domain LC20_02649 PF00923 Transaldolase/Fructose-6-phosphate aldolase LC20_02650 PF04328 Selenoprotein, putative LC20_02651 PF02554 Carbon starvation protein CstA LC20_02651 PF13722 5TM C-terminal transporter carbon starvation CstA LC20_02657 PF00633 Helix-hairpin-helix motif LC20_02657 PF00730 HhH-GPD superfamily base excision DNA repair protein LC20_02657 PF10576 Iron-sulfur binding domain of endonuclease III LC20_02658 PF02508 Rnf-Nqr subunit, membrane protein LC20_02659 PF04205 FMN-binding domain LC20_02660 PF03116 NQR2, RnfD, RnfE family LC20_02661 PF12833 Helix-turn-helix domain LC20_02661 PF06445 GyrI-like small molecule binding domain LC20_02662 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LC20_02662 PF13237 4Fe-4S dicluster domain LC20_02662 PF13375 RnfC Barrel sandwich hybrid domain LC20_02662 PF10531 SLBB domain LC20_02663 PF04060 Putative Fe-S cluster LC20_02664 PF02508 Rnf-Nqr subunit, membrane protein LC20_02666 PF10754 Protein of unknown function (DUF2569) LC20_02667 PF01268 Formate--tetrahydrofolate ligase LC20_02669 PF00664 ABC transporter transmembrane region LC20_02669 PF00005 ABC transporter LC20_02669 PF03412 Peptidase C39 family LC20_02670 PF13533 Biotin-lipoyl like LC20_02672 PF03412 Peptidase C39 family LC20_02672 PF00005 ABC transporter LC20_02672 PF00664 ABC transporter transmembrane region LC20_02675 PF11762 L-arabinose isomerase C-terminal domain LC20_02675 PF02610 L-arabinose isomerase LC20_02678 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_02679 PF00005 ABC transporter LC20_02680 PF02653 Branched-chain amino acid transport system / permease component LC20_02681 PF02311 AraC-like ligand binding domain LC20_02681 PF12833 Helix-turn-helix domain LC20_02682 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LC20_02682 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_02684 PF13593 SBF-like CPA transporter family (DUF4137) LC20_02685 PF00962 Adenosine/AMP deaminase LC20_02686 PF00155 Aminotransferase class I and II LC20_02687 PF02378 Phosphotransferase system, EIIC LC20_02687 PF00367 phosphotransferase system, EIIB LC20_02688 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_02688 PF00356 Bacterial regulatory proteins, lacI family LC20_02690 PF06097 Bacterial protein of unknown function (DUF945) LC20_02691 PF01238 Phosphomannose isomerase type I LC20_02692 PF00206 Lyase LC20_02692 PF10415 Fumarase C C-terminus LC20_02693 PF07298 NnrU protein LC20_02694 PF05472 DNA replication terminus site-binding protein (Ter protein) LC20_02699 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_02699 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_02700 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_02700 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_02702 PF00419 Fimbrial protein LC20_02703 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_02703 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_02710 PF07690 Major Facilitator Superfamily LC20_02712 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02712 PF03466 LysR substrate binding domain LC20_02713 PF00480 ROK family LC20_02715 PF00654 Voltage gated chloride channel LC20_02717 PF06649 Protein of unknown function (DUF1161) LC20_02718 PF06932 Protein of unknown function (DUF1283) LC20_02719 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LC20_02720 PF00106 short chain dehydrogenase LC20_02721 PF07690 Major Facilitator Superfamily LC20_02729 PF02798 Glutathione S-transferase, N-terminal domain LC20_02731 PF01037 Lrp/AsnC ligand binding domain LC20_02732 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02733 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02734 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_02739 PF03466 LysR substrate binding domain LC20_02739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02740 PF01048 Phosphorylase superfamily LC20_02740 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus LC20_02753 PF00486 Transcriptional regulatory protein, C terminal LC20_02757 PF17287 POTRA domain LC20_02757 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB LC20_02757 PF08479 POTRA domain, ShlB-type LC20_02761 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_02761 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_02764 PF16970 Type-1 fimbrial protein, A LC20_02767 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_02767 PF00205 Thiamine pyrophosphate enzyme, central domain LC20_02767 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_02768 PF01842 ACT domain LC20_02770 PF13419 Haloacid dehalogenase-like hydrolase LC20_02772 PF03466 LysR substrate binding domain LC20_02772 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02777 PF00294 pfkB family carbohydrate kinase LC20_02778 PF00245 Alkaline phosphatase LC20_02780 PF03466 LysR substrate binding domain LC20_02780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02781 PF06445 GyrI-like small molecule binding domain LC20_02784 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LC20_02784 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LC20_02785 PF13545 Crp-like helix-turn-helix domain LC20_02785 PF00027 Cyclic nucleotide-binding domain LC20_02786 PF00582 Universal stress protein family LC20_02787 PF02233 NAD(P) transhydrogenase beta subunit LC20_02797 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LC20_02797 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LC20_02797 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LC20_02798 PF07338 Protein of unknown function (DUF1471) LC20_02800 PF13520 Amino acid permease LC20_02802 PF00486 Transcriptional regulatory protein, C terminal LC20_02802 PF00072 Response regulator receiver domain LC20_02803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_02803 PF00672 HAMP domain LC20_02803 PF00512 His Kinase A (phospho-acceptor) domain LC20_02804 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LC20_02807 PF00089 Trypsin LC20_02809 PF01381 Helix-turn-helix LC20_02810 PF05973 Phage derived protein Gp49-like (DUF891) LC20_02816 PF02525 Flavodoxin-like fold LC20_02817 PF00325 Bacterial regulatory proteins, crp family LC20_02817 PF04198 Putative sugar-binding domain LC20_02818 PF01232 Mannitol dehydrogenase Rossmann domain LC20_02818 PF08125 Mannitol dehydrogenase C-terminal domain LC20_02819 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_02819 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_02821 PF07690 Major Facilitator Superfamily LC20_02824 PF07027 Protein of unknown function (DUF1318) LC20_02825 PF13617 YnbE-like lipoprotein LC20_02826 PF11739 Dicarboxylate transport LC20_02828 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LC20_02828 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_02829 PF03891 Domain of unknown function (DUF333) LC20_02830 PF02308 MgtC family LC20_02831 PF00893 Small Multidrug Resistance protein LC20_02834 PF00196 Bacterial regulatory proteins, luxR family LC20_02837 PF01171 PP-loop family LC20_02842 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_02843 PF00246 Zinc carboxypeptidase LC20_02844 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LC20_02844 PF13378 Enolase C-terminal domain-like LC20_02845 PF08534 Redoxin LC20_02846 PF00158 Sigma-54 interaction domain LC20_02846 PF18024 Helix-turn-helix domain LC20_02849 PF05128 Domain of unknown function (DUF697) LC20_02851 PF04317 YcjX-like family, DUF463 LC20_02853 PF04024 PspC domain LC20_02854 PF06667 Phage shock protein B LC20_02855 PF04012 PspA/IM30 family LC20_02856 PF02954 Bacterial regulatory protein, Fis family LC20_02856 PF00158 Sigma-54 interaction domain LC20_02859 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_02860 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02861 PF12911 N-terminal TM domain of oligopeptide transport permease C LC20_02861 PF00528 Binding-protein-dependent transport system inner membrane component LC20_02862 PF00005 ABC transporter LC20_02862 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_02863 PF00005 ABC transporter LC20_02887 PF04893 Yip1 domain LC20_02888 PF11656 YjbD family (DUF3811) LC20_02889 PF02798 Glutathione S-transferase, N-terminal domain LC20_02889 PF00043 Glutathione S-transferase, C-terminal domain LC20_02890 PF08543 Phosphomethylpyrimidine kinase LC20_02891 PF01479 S4 domain LC20_02891 PF00579 tRNA synthetases class I (W and Y) LC20_02892 PF01243 Pyridoxamine 5'-phosphate oxidase LC20_02892 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LC20_02893 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme LC20_02894 PF03702 Anhydro-N-acetylmuramic acid kinase LC20_02897 PF05433 Glycine zipper 2TM domain LC20_02898 PF01047 MarR family LC20_02899 PF07869 Protein of unknown function (DUF1656) LC20_02900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_02900 PF00529 HlyD membrane-fusion protein of T1SS LC20_02901 PF04632 Fusaric acid resistance protein family LC20_02902 PF00248 Aldo/keto reductase family LC20_02904 PF06945 Protein of unknown function (DUF1289) LC20_02905 PF08019 Phosphoethanolamine transferase EptA/EptB LC20_02905 PF00884 Sulfatase LC20_02906 PF16925 Tetracyclin repressor-like, C-terminal domain LC20_02906 PF00440 Bacterial regulatory proteins, tetR family LC20_02907 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LC20_02908 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LC20_02909 PF00929 Exonuclease LC20_02910 PF00462 Glutaredoxin LC20_02911 PF00877 NlpC/P60 family LC20_02914 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LC20_02914 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LC20_02917 PF03466 LysR substrate binding domain LC20_02917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_02921 PF07690 Major Facilitator Superfamily LC20_02923 PF00677 Lumazine binding domain LC20_02924 PF01554 MatE LC20_02925 PF02887 Pyruvate kinase, alpha/beta domain LC20_02925 PF00224 Pyruvate kinase, barrel domain LC20_02926 PF04728 Lipoprotein leucine-zipper LC20_02927 PF03734 L,D-transpeptidase catalytic domain LC20_02927 PF01476 LysM domain LC20_02927 PF17969 L,D-transpeptidase C-terminal domain LC20_02929 PF02657 Fe-S metabolism associated domain LC20_02930 PF00266 Aminotransferase class-V LC20_02931 PF01458 Uncharacterized protein family (UPF0051) LC20_02932 PF00005 ABC transporter LC20_02933 PF01458 Uncharacterized protein family (UPF0051) LC20_02934 PF01521 Iron-sulphur cluster biosynthesis LC20_02935 PF03061 Thioesterase superfamily LC20_02936 PF02913 FAD linked oxidases, C-terminal domain LC20_02936 PF13183 4Fe-4S dicluster domain LC20_02936 PF01565 FAD binding domain LC20_02938 PF01594 AI-2E family transporter LC20_02942 PF02896 PEP-utilising enzyme, TIM barrel domain LC20_02942 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LC20_02942 PF00391 PEP-utilising enzyme, mobile domain LC20_02943 PF03618 Kinase/pyrophosphorylase LC20_02945 PF00793 DAHP synthetase I family LC20_02947 PF10636 Hemin uptake protein hemP LC20_02948 PF00593 TonB dependent receptor LC20_02948 PF07715 TonB-dependent Receptor Plug Domain LC20_02949 PF05171 Haemin-degrading HemS.ChuX domain LC20_02952 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LC20_02953 PF10437 Bacterial lipoate protein ligase C-terminus LC20_02953 PF03099 Biotin/lipoate A/B protein ligase family LC20_02954 PF00877 NlpC/P60 family LC20_02956 PF00892 EamA-like transporter family LC20_02957 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LC20_02958 PF01522 Polysaccharide deacetylase LC20_02959 PF01370 NAD dependent epimerase/dehydratase family LC20_02959 PF00551 Formyl transferase LC20_02959 PF02911 Formyl transferase, C-terminal domain LC20_02960 PF00535 Glycosyl transferase family 2 LC20_02965 PF00005 ABC transporter LC20_02966 PF00255 Glutathione peroxidase LC20_02969 PF05154 TM2 domain LC20_02971 PF00216 Bacterial DNA-binding protein LC20_02974 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LC20_02974 PF01409 tRNA synthetases class II core domain (F) LC20_02975 PF00453 Ribosomal protein L20 LC20_02977 PF03129 Anticodon binding domain LC20_02977 PF02824 TGS domain LC20_02977 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LC20_02977 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LC20_02979 PF13619 KTSC domain LC20_02987 PF01464 Transglycosylase SLT domain LC20_02988 PF01297 Zinc-uptake complex component A periplasmic LC20_02991 PF00950 ABC 3 transport family LC20_02992 PF00950 ABC 3 transport family LC20_02995 PF02310 B12 binding domain LC20_02995 PF01642 Methylmalonyl-CoA mutase LC20_02997 PF00378 Enoyl-CoA hydratase/isomerase LC20_02998 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LC20_02998 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LC20_02999 PF03466 LysR substrate binding domain LC20_02999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_03000 PF14002 YniB-like protein LC20_03002 PF07883 Cupin domain LC20_03004 PF04962 KduI/IolB family LC20_03007 PF06917 Periplasmic pectate lyase LC20_03008 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03009 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03010 PF17912 MalK OB fold domain LC20_03010 PF00005 ABC transporter LC20_03010 PF03459 TOBE domain LC20_03013 PF06178 Oligogalacturonate-specific porin protein (KdgM) LC20_03014 PF04307 LexA-binding, inner membrane-associated putative hydrolase LC20_03016 PF01510 N-acetylmuramoyl-L-alanine amidase LC20_03017 PF01614 Bacterial transcriptional regulator LC20_03017 PF09339 IclR helix-turn-helix domain LC20_03019 PF14583 Oligogalacturonate lyase LC20_03020 PF07690 Major Facilitator Superfamily LC20_03021 PF01435 Peptidase family M48 LC20_03027 PF17516 ProQ C-terminal domain LC20_03027 PF04352 ProQ/FINO family LC20_03028 PF13185 GAF domain LC20_03031 PF02470 MlaD protein LC20_03032 PF03466 LysR substrate binding domain LC20_03032 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_03044 PF01590 GAF domain LC20_03044 PF00360 Phytochrome region LC20_03044 PF00563 EAL domain LC20_03044 PF00990 Diguanylate cyclase, GGDEF domain LC20_03045 PF07351 Protein of unknown function (DUF1480) LC20_03050 PF14834 Glutathione S-transferase, C-terminal domain LC20_03050 PF02798 Glutathione S-transferase, N-terminal domain LC20_03054 PF03616 Sodium/glutamate symporter LC20_03055 PF01479 S4 domain LC20_03055 PF00849 RNA pseudouridylate synthase LC20_03056 PF00144 Beta-lactamase LC20_03059 PF03278 IpaB/EvcA family LC20_03060 PF00872 Transposase, Mutator family LC20_03076 PF13274 Protein of unknown function (DUF4065) LC20_03087 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) LC20_03089 PF06381 Protein of unknown function (DUF1073) LC20_03091 PF04221 RelB antitoxin LC20_03092 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LC20_03097 PF02195 ParB-like nuclease domain LC20_03102 PF00959 Phage lysozyme LC20_03106 PF06530 Phage antitermination protein Q LC20_03119 PF01381 Helix-turn-helix LC20_03127 PF00589 Phage integrase family LC20_03127 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LC20_03128 PF00872 Transposase, Mutator family LC20_03129 PF10709 Protein of unknown function (DUF2511) LC20_03131 PF05425 Copper resistance protein D LC20_03132 PF04234 CopC domain LC20_03133 PF00210 Ferritin-like domain LC20_03135 PF06440 DNA polymerase III, theta subunit LC20_03136 PF00561 alpha/beta hydrolase fold LC20_03138 PF00929 Exonuclease LC20_03139 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LC20_03139 PF00326 Prolyl oligopeptidase family LC20_03140 PF13995 YebF-like protein LC20_03142 PF07130 YebG protein LC20_03143 PF00270 DEAD/DEAH box helicase LC20_03143 PF03880 DbpA RNA binding domain LC20_03143 PF00271 Helicase conserved C-terminal domain LC20_03145 PF02222 ATP-grasp domain LC20_03146 PF03701 Uncharacterised protein family (UPF0181) LC20_03147 PF00425 chorismate binding enzyme LC20_03147 PF04715 Anthranilate synthase component I, N terminal region LC20_03148 PF00293 NUDIX domain LC20_03150 PF03315 Serine dehydratase beta chain LC20_03150 PF03313 Serine dehydratase alpha chain LC20_03154 PF03471 Transporter associated domain LC20_03154 PF03741 Integral membrane protein TerC family LC20_03156 PF03830 PTS system sorbose subfamily IIB component LC20_03156 PF03610 PTS system fructose IIA component LC20_03157 PF03609 PTS system sorbose-specific iic component LC20_03158 PF03613 PTS system mannose/fructose/sorbose family IID component LC20_03159 PF06173 Protein of unknown function (DUF986) LC20_03160 PF02659 Putative manganese efflux pump LC20_03161 PF07715 TonB-dependent Receptor Plug Domain LC20_03161 PF00593 TonB dependent receptor LC20_03164 PF00563 EAL domain LC20_03164 PF08447 PAS fold LC20_03164 PF05231 MASE1 LC20_03164 PF00990 Diguanylate cyclase, GGDEF domain LC20_03164 PF08448 PAS fold LC20_03164 PF13426 PAS domain LC20_03166 PF13847 Methyltransferase domain LC20_03167 PF03717 Penicillin-binding Protein dimerisation domain LC20_03167 PF00905 Penicillin binding protein transpeptidase domain LC20_03170 PF10736 Protein of unknown function (DUF2627) LC20_03171 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP LC20_03172 PF00324 Amino acid permease LC20_03175 PF13974 YebO-like protein LC20_03176 PF13998 MgrB protein LC20_03177 PF13996 YobH-like protein LC20_03178 PF10964 Protein of unknown function (DUF2766) LC20_03180 PF12833 Helix-turn-helix domain LC20_03183 PF13520 Amino acid permease LC20_03185 PF00005 ABC transporter LC20_03185 PF00664 ABC transporter transmembrane region LC20_03187 PF00990 Diguanylate cyclase, GGDEF domain LC20_03187 PF01590 GAF domain LC20_03187 PF00360 Phytochrome region LC20_03187 PF00563 EAL domain LC20_03189 PF06411 HdeA/HdeB family LC20_03190 PF07007 Lysozyme inhibitor LprI LC20_03193 PF00892 EamA-like transporter family LC20_03194 PF07690 Major Facilitator Superfamily LC20_03195 PF13378 Enolase C-terminal domain-like LC20_03195 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LC20_03196 PF00392 Bacterial regulatory proteins, gntR family LC20_03196 PF07729 FCD domain LC20_03197 PF08240 Alcohol dehydrogenase GroES-like domain LC20_03197 PF00107 Zinc-binding dehydrogenase LC20_03198 PF08125 Mannitol dehydrogenase C-terminal domain LC20_03198 PF01232 Mannitol dehydrogenase Rossmann domain LC20_03199 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LC20_03199 PF08666 SAF domain LC20_03202 PF01638 HxlR-like helix-turn-helix LC20_03203 PF05368 NmrA-like family LC20_03204 PF01053 Cys/Met metabolism PLP-dependent enzyme LC20_03206 PF00717 Peptidase S24-like LC20_03210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_03210 PF08447 PAS fold LC20_03212 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_03212 PF00356 Bacterial regulatory proteins, lacI family LC20_03213 PF00251 Glycosyl hydrolases family 32 N-terminal domain LC20_03213 PF08244 Glycosyl hydrolases family 32 C terminal LC20_03214 PF01306 LacY proton/sugar symporter LC20_03219 PF01757 Acyltransferase family LC20_03220 PF01609 Transposase DDE domain LC20_03220 PF05598 Transposase domain (DUF772) LC20_03221 PF01757 Acyltransferase family LC20_03224 PF02706 Chain length determinant protein LC20_03233 PF02369 Bacterial Ig-like domain (group 1) LC20_03233 PF11924 Inverse autotransporter, beta-domain LC20_03233 PF09134 Invasin, domain 3 LC20_03238 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LC20_03261 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) LC20_03263 PF06381 Protein of unknown function (DUF1073) LC20_03265 PF04221 RelB antitoxin LC20_03266 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LC20_03271 PF02195 ParB-like nuclease domain LC20_03274 PF00959 Phage lysozyme LC20_03304 PF00589 Phage integrase family LC20_03304 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LC20_03306 PF00180 Isocitrate/isopropylmalate dehydrogenase LC20_03307 PF00849 RNA pseudouridylate synthase LC20_03308 PF00293 NUDIX domain LC20_03310 PF04356 Protein of unknown function (DUF489) LC20_03311 PF08328 Adenylosuccinate lyase C-terminal LC20_03311 PF00206 Lyase LC20_03313 PF00486 Transcriptional regulatory protein, C terminal LC20_03313 PF00072 Response regulator receiver domain LC20_03314 PF08918 PhoQ Sensor LC20_03314 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_03315 PF08007 Cupin superfamily protein LC20_03316 PF01546 Peptidase family M20/M25/M40 LC20_03316 PF07687 Peptidase dimerisation domain LC20_03317 PF02146 Sir2 family LC20_03319 PF00480 ROK family LC20_03320 PF02687 FtsX-like permease family LC20_03320 PF12704 MacB-like periplasmic core domain LC20_03321 PF00005 ABC transporter LC20_03322 PF02687 FtsX-like permease family LC20_03322 PF12704 MacB-like periplasmic core domain LC20_03323 PF02559 CarD-like/TRCF domain LC20_03323 PF00271 Helicase conserved C-terminal domain LC20_03323 PF00270 DEAD/DEAH box helicase LC20_03323 PF03461 TRCF domain LC20_03323 PF17757 UvrB interaction domain LC20_03324 PF05433 Glycine zipper 2TM domain LC20_03326 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_03327 PF05728 Uncharacterised protein family (UPF0227) LC20_03328 PF00933 Glycosyl hydrolase family 3 N terminal domain LC20_03329 PF01636 Phosphotransferase enzyme family LC20_03330 PF13036 Peptidoglycan-synthase activator LpoB LC20_03330 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LC20_03331 PF07233 Protein of unknown function (DUF1425) LC20_03332 PF01230 HIT domain LC20_03333 PF08501 Shikimate dehydrogenase substrate binding domain LC20_03334 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_03334 PF12793 Sugar transport-related sRNA regulator N-term LC20_03336 PF00367 phosphotransferase system, EIIB LC20_03336 PF02378 Phosphotransferase system, EIIC LC20_03339 PF01026 TatD related DNase LC20_03340 PF09115 DNA polymerase III, delta subunit, C terminal LC20_03341 PF02223 Thymidylate kinase LC20_03342 PF02618 YceG-like family LC20_03343 PF01063 Amino-transferase class IV LC20_03344 PF02801 Beta-ketoacyl synthase, C-terminal domain LC20_03344 PF00109 Beta-ketoacyl synthase, N-terminal domain LC20_03345 PF00550 Phosphopantetheine attachment site LC20_03347 PF00698 Acyl transferase domain LC20_03348 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LC20_03348 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LC20_03349 PF02504 Fatty acid synthesis protein LC20_03350 PF01783 Ribosomal L32p protein family LC20_03351 PF02620 Large ribosomal RNA subunit accumulation protein YceD LC20_03352 PF02545 Maf-like protein LC20_03353 PF01479 S4 domain LC20_03353 PF00849 RNA pseudouridylate synthase LC20_03356 PF03992 Antibiotic biosynthesis monooxygenase LC20_03357 PF01979 Amidohydrolase family LC20_03358 PF06183 DinI-like family LC20_03361 PF13991 BssS protein family LC20_03362 PF01266 FAD dependent oxidoreductase LC20_03363 PF00196 Bacterial regulatory proteins, luxR family LC20_03364 PF10968 Protein of unknown function (DUF2770) LC20_03365 PF01594 AI-2E family transporter LC20_03373 PF03279 Bacterial lipid A biosynthesis acyltransferase LC20_03374 PF07681 DoxX LC20_03375 PF07690 Major Facilitator Superfamily LC20_03376 PF00854 POT family LC20_03378 PF07119 Protein of unknown function (DUF1375) LC20_03379 PF00535 Glycosyl transferase family 2 LC20_03380 PF04349 Periplasmic glucan biosynthesis protein, MdoG LC20_03381 PF01757 Acyltransferase family LC20_03384 PF03471 Transporter associated domain LC20_03384 PF02080 TrkA-C domain LC20_03384 PF00999 Sodium/hydrogen exchanger family LC20_03387 PF00765 Autoinducer synthase LC20_03388 PF03472 Autoinducer binding domain LC20_03388 PF00196 Bacterial regulatory proteins, luxR family LC20_03391 PF04358 DsrC like protein LC20_03392 PF00708 Acylphosphatase LC20_03395 PF17785 PUA-like domain LC20_03395 PF10672 S-adenosylmethionine-dependent methyltransferase LC20_03396 PF08755 Hemimethylated DNA-binding protein YccV like LC20_03397 PF13380 CoA binding domain LC20_03401 PF02142 MGS-like domain LC20_03403 PF00580 UvrD/REP helicase N-terminal domain LC20_03403 PF13361 UvrD-like helicase C-terminal domain LC20_03403 PF12462 DNA helicase IV / RNA helicase N terminal LC20_03404 PF03733 Inner membrane component domain LC20_03406 PF12805 FUSC-like inner membrane protein yccS LC20_03407 PF04994 TfoX C-terminal domain LC20_03407 PF04993 TfoX N-terminal domain LC20_03408 PF03846 Cell division inhibitor SulA LC20_03409 PF00691 OmpA family LC20_03409 PF01389 OmpA-like transmembrane domain LC20_03410 PF06303 MatP N-terminal domain LC20_03410 PF17414 MatP C-terminal ribbon-helix-helix domain LC20_03411 PF13654 AAA domain LC20_03411 PF05362 Lon protease (S16) C-terminal proteolytic domain LC20_03412 PF07977 FabA-like domain LC20_03414 PF02801 Beta-ketoacyl synthase, C-terminal domain LC20_03414 PF00109 Beta-ketoacyl synthase, N-terminal domain LC20_03415 PF03886 ABC-type transport auxiliary lipoprotein component LC20_03416 PF02470 MlaD protein LC20_03417 PF04403 Paraquat-inducible protein A LC20_03418 PF16326 ABC transporter C-terminal domain LC20_03418 PF12848 ABC transporter LC20_03418 PF00005 ABC transporter LC20_03419 PF10672 S-adenosylmethionine-dependent methyltransferase LC20_03419 PF01170 Putative RNA methylase family UPF0020 LC20_03419 PF02926 THUMP domain LC20_03420 PF00111 2Fe-2S iron-sulfur cluster binding domain LC20_03420 PF03473 MOSC domain LC20_03420 PF03476 MOSC N-terminal beta barrel domain LC20_03421 PF07126 Cell-division protein ZapC LC20_03422 PF01180 Dihydroorotate dehydrogenase LC20_03423 PF11940 Domain of unknown function (DUF3458) Ig-like fold LC20_03423 PF01433 Peptidase family M1 domain LC20_03423 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LC20_03428 PF01526 Tn3 transposase DDE domain LC20_03428 PF13700 Domain of unknown function (DUF4158) LC20_03432 PF09134 Invasin, domain 3 LC20_03432 PF11924 Inverse autotransporter, beta-domain LC20_03432 PF02369 Bacterial Ig-like domain (group 1) LC20_03435 PF00239 Resolvase, N terminal domain LC20_03435 PF02796 Helix-turn-helix domain of resolvase LC20_03440 PF02796 Helix-turn-helix domain of resolvase LC20_03440 PF00239 Resolvase, N terminal domain LC20_03449 PF00152 tRNA synthetases class II (D, K and N) LC20_03449 PF01336 OB-fold nucleic acid binding domain LC20_03450 PF00267 Gram-negative porin LC20_03451 PF00155 Aminotransferase class I and II LC20_03452 PF00563 EAL domain LC20_03452 PF12792 CSS motif domain associated with EAL LC20_03453 PF00753 Metallo-beta-lactamase superfamily LC20_03454 PF05951 Bacterial protein of unknown function (DUF882) LC20_03455 PF03734 L,D-transpeptidase catalytic domain LC20_03455 PF01471 Putative peptidoglycan binding domain LC20_03456 PF04310 MukB N-terminal LC20_03456 PF16330 MukB hinge domain LC20_03457 PF04288 MukE-like family LC20_03458 PF17192 MukF middle domain LC20_03458 PF17193 MukF C-terminal domain LC20_03458 PF03882 MukF winged-helix domain LC20_03460 PF02698 DUF218 domain LC20_03461 PF01636 Phosphotransferase enzyme family LC20_03462 PF02348 Cytidylyltransferase LC20_03463 PF03966 Trm112p-like protein LC20_03465 PF00313 'Cold-shock' DNA-binding domain LC20_03466 PF00313 'Cold-shock' DNA-binding domain LC20_03467 PF07063 Domain of unknown function (DUF1338) LC20_03469 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LC20_03470 PF00005 ABC transporter LC20_03470 PF00664 ABC transporter transmembrane region LC20_03471 PF03772 Competence protein LC20_03471 PF00753 Metallo-beta-lactamase superfamily LC20_03473 PF00216 Bacterial DNA-binding protein LC20_03474 PF00575 S1 RNA binding domain LC20_03475 PF02224 Cytidylate kinase LC20_03476 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LC20_03479 PF17763 Glutaminase/Asparaginase C-terminal domain LC20_03479 PF00710 Asparaginase, N-terminal LC20_03480 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LC20_03480 PF18381 YcaO cyclodehydratase C-terminal domain LC20_03483 PF01226 Formate/nitrite transporter LC20_03484 PF02901 Pyruvate formate lyase-like LC20_03484 PF01228 Glycine radical LC20_03485 PF04055 Radical SAM superfamily LC20_03486 PF07690 Major Facilitator Superfamily LC20_03488 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LC20_03488 PF02403 Seryl-tRNA synthetase N-terminal domain LC20_03491 PF03548 Outer membrane lipoprotein carrier protein LolA LC20_03492 PF01580 FtsK/SpoIIIE family LC20_03492 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LC20_03492 PF09397 Ftsk gamma domain LC20_03492 PF17854 FtsK alpha domain LC20_03493 PF01037 Lrp/AsnC ligand binding domain LC20_03494 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_03495 PF00664 ABC transporter transmembrane region LC20_03495 PF00005 ABC transporter LC20_03497 PF00005 ABC transporter LC20_03497 PF00664 ABC transporter transmembrane region LC20_03498 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LC20_03499 PF01176 Translation initiation factor 1A / IF-1 LC20_03501 PF17871 AAA lid domain LC20_03501 PF00004 ATPase family associated with various cellular activities (AAA) LC20_03501 PF10431 C-terminal, D2-small domain, of ClpB protein LC20_03501 PF07724 AAA domain (Cdc48 subfamily) LC20_03501 PF02861 Clp amino terminal domain, pathogenicity island component LC20_03502 PF02617 ATP-dependent Clp protease adaptor protein ClpS LC20_03503 PF00313 'Cold-shock' DNA-binding domain LC20_03504 PF00005 ABC transporter LC20_03504 PF02687 FtsX-like permease family LC20_03504 PF12704 MacB-like periplasmic core domain LC20_03505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_03506 PF04393 Protein of unknown function (DUF535) LC20_03507 PF11398 Protein of unknown function (DUF2813) LC20_03509 PF03956 Lysine exporter LysO LC20_03510 PF03063 Prismane/CO dehydrogenase family LC20_03511 PF00970 Oxidoreductase FAD-binding domain LC20_03511 PF00111 2Fe-2S iron-sulfur cluster binding domain LC20_03511 PF00175 Oxidoreductase NAD-binding domain LC20_03512 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_03512 PF00205 Thiamine pyrophosphate enzyme, central domain LC20_03512 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_03520 PF11066 Protein of unknown function (DUF2867) LC20_03520 PF13460 NAD(P)H-binding LC20_03521 PF01370 NAD dependent epimerase/dehydratase family LC20_03523 PF12883 Protein of unknown function (DUF3828) LC20_03525 PF00005 ABC transporter LC20_03526 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_03527 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03528 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03531 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_03532 PF05958 tRNA (Uracil-5-)-methyltransferase LC20_03534 PF10767 Protein of unknown function (DUF2593) LC20_03535 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03536 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03537 PF00005 ABC transporter LC20_03537 PF08402 TOBE domain LC20_03539 PF13416 Bacterial extracellular solute-binding protein LC20_03540 PF10722 Putative bacterial sensory transduction regulator LC20_03541 PF07214 Protein of unknown function (DUF1418) LC20_03542 PF00462 Glutaredoxin LC20_03543 PF06826 Predicted Permease Membrane Region LC20_03543 PF02080 TrkA-C domain LC20_03545 PF01569 PAP2 superfamily LC20_03546 PF01791 DeoC/LacD family aldolase LC20_03548 PF08220 DeoR-like helix-turn-helix domain LC20_03548 PF00455 DeoR C terminal sensor domain LC20_03553 PF03313 Serine dehydratase alpha chain LC20_03553 PF03315 Serine dehydratase beta chain LC20_03555 PF07943 Penicillin-binding protein 5, C-terminal domain LC20_03555 PF00768 D-alanyl-D-alanine carboxypeptidase LC20_03556 PF00291 Pyridoxal-phosphate dependent enzyme LC20_03556 PF00571 CBS domain LC20_03557 PF01053 Cys/Met metabolism PLP-dependent enzyme LC20_03558 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03559 PF09383 NIL domain LC20_03559 PF00005 ABC transporter LC20_03560 PF03180 NLPA lipoprotein LC20_03566 PF13417 Glutathione S-transferase, N-terminal domain LC20_03566 PF00043 Glutathione S-transferase, C-terminal domain LC20_03567 PF00593 TonB dependent receptor LC20_03567 PF07715 TonB-dependent Receptor Plug Domain LC20_03568 PF00005 ABC transporter LC20_03569 PF01032 FecCD transport family LC20_03570 PF00324 Amino acid permease LC20_03572 PF03466 LysR substrate binding domain LC20_03572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_03575 PF03601 Conserved hypothetical protein 698 LC20_03577 PF01261 Xylose isomerase-like TIM barrel LC20_03579 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LC20_03579 PF02378 Phosphotransferase system, EIIC LC20_03580 PF00294 pfkB family carbohydrate kinase LC20_03581 PF00381 PTS HPr component phosphorylation site LC20_03581 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LC20_03583 PF13344 Haloacid dehalogenase-like hydrolase LC20_03583 PF00293 NUDIX domain LC20_03585 PF03692 Putative zinc- or iron-chelating domain LC20_03586 PF03222 Tryptophan/tyrosine permease family LC20_03587 PF01132 Elongation factor P (EF-P) OB domain LC20_03587 PF08207 Elongation factor P (EF-P) KOW-like domain LC20_03587 PF09285 Elongation factor P, C-terminal LC20_03588 PF03786 D-mannonate dehydratase (UxuA) LC20_03589 PF08125 Mannitol dehydrogenase C-terminal domain LC20_03589 PF01232 Mannitol dehydrogenase Rossmann domain LC20_03590 PF07729 FCD domain LC20_03590 PF00392 Bacterial regulatory proteins, gntR family LC20_03592 PF07683 Cobalamin synthesis protein cobW C-terminal domain LC20_03592 PF02492 CobW/HypB/UreG, nucleotide-binding domain LC20_03593 PF01569 PAP2 superfamily LC20_03595 PF00877 NlpC/P60 family LC20_03596 PF12792 CSS motif domain associated with EAL LC20_03596 PF00563 EAL domain LC20_03597 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_03599 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03603 PF00005 ABC transporter LC20_03603 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_03604 PF13989 YejG-like protein LC20_03608 PF07690 Major Facilitator Superfamily LC20_03609 PF00849 RNA pseudouridylate synthase LC20_03609 PF01479 S4 domain LC20_03611 PF04851 Type III restriction enzyme, res subunit LC20_03611 PF00271 Helicase conserved C-terminal domain LC20_03614 PF04245 37-kD nucleoid-associated bacterial protein LC20_03615 PF07208 Protein of unknown function (DUF1414) LC20_03616 PF00884 Sulfatase LC20_03616 PF11893 Domain of unknown function (DUF3413) LC20_03621 PF00891 O-methyltransferase domain LC20_03622 PF00232 Glycosyl hydrolase family 1 LC20_03623 PF02378 Phosphotransferase system, EIIC LC20_03623 PF00367 phosphotransferase system, EIIB LC20_03623 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LC20_03624 PF01380 SIS domain LC20_03624 PF01418 Helix-turn-helix domain, rpiR family LC20_03625 PF06183 DinI-like family LC20_03626 PF00672 HAMP domain LC20_03626 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_03626 PF02743 Cache domain LC20_03627 PF12706 Beta-lactamase superfamily domain LC20_03630 PF00144 Beta-lactamase LC20_03631 PF00267 Gram-negative porin LC20_03634 PF07690 Major Facilitator Superfamily LC20_03635 PF16359 RcsD-ABL domain LC20_03635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_03635 PF01627 Hpt domain LC20_03636 PF00072 Response regulator receiver domain LC20_03636 PF00196 Bacterial regulatory proteins, luxR family LC20_03648 PF03989 DNA gyrase C-terminal domain, beta-propeller LC20_03648 PF00521 DNA gyrase/topoisomerase IV, subunit A LC20_03651 PF03477 ATP cone domain LC20_03651 PF02867 Ribonucleotide reductase, barrel domain LC20_03651 PF00317 Ribonucleotide reductase, all-alpha domain LC20_03652 PF00268 Ribonucleotide reductase, small chain LC20_03653 PF00111 2Fe-2S iron-sulfur cluster binding domain LC20_03654 PF03974 Ecotin LC20_03655 PF00994 Probable molybdopterin binding domain LC20_03656 PF03222 Tryptophan/tyrosine permease family LC20_03657 PF07437 YfaZ precursor LC20_03659 PF00199 Catalase LC20_03659 PF06628 Catalase-related immune-responsive LC20_03660 PF00501 AMP-binding enzyme LC20_03660 PF13193 AMP-binding enzyme C-terminal domain LC20_03661 PF13378 Enolase C-terminal domain-like LC20_03662 PF00378 Enoyl-CoA hydratase/isomerase LC20_03663 PF12697 Alpha/beta hydrolase family LC20_03664 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_03664 PF16582 Middle domain of thiamine pyrophosphate LC20_03664 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_03665 PF00425 chorismate binding enzyme LC20_03669 PF05957 Bacterial protein of unknown function (DUF883) LC20_03671 PF03928 Haem-degrading LC20_03672 PF07690 Major Facilitator Superfamily LC20_03674 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_03674 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LC20_03677 PF00106 short chain dehydrogenase LC20_03678 PF01202 Shikimate kinase LC20_03681 PF06496 Protein of unknown function (DUF1097) LC20_03683 PF00361 Proton-conducting membrane transporter LC20_03684 PF00361 Proton-conducting membrane transporter LC20_03685 PF00361 Proton-conducting membrane transporter LC20_03685 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LC20_03686 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LC20_03687 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LC20_03688 PF12838 4Fe-4S dicluster domain LC20_03689 PF00146 NADH dehydrogenase LC20_03690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_03690 PF00384 Molybdopterin oxidoreductase LC20_03690 PF01568 Molydopterin dinucleotide binding domain LC20_03690 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LC20_03691 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LC20_03691 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LC20_03691 PF10531 SLBB domain LC20_03693 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LC20_03693 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LC20_03694 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LC20_03695 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LC20_03696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_03696 PF03466 LysR substrate binding domain LC20_03699 PF00155 Aminotransferase class I and II LC20_03701 PF02080 TrkA-C domain LC20_03701 PF03600 Citrate transporter LC20_03703 PF13419 Haloacid dehalogenase-like hydrolase LC20_03704 PF03887 YfbU domain LC20_03705 PF04217 Protein of unknown function, DUF412 LC20_03706 PF00871 Acetokinase family LC20_03708 PF07085 DRTGG domain LC20_03708 PF01515 Phosphate acetyl/butaryl transferase LC20_03709 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_03709 PF00356 Bacterial regulatory proteins, lacI family LC20_03710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LC20_03712 PF03611 PTS system sugar-specific permease component LC20_03713 PF00293 NUDIX domain LC20_03714 PF12850 Calcineurin-like phosphoesterase superfamily domain LC20_03718 PF01370 NAD dependent epimerase/dehydratase family LC20_03718 PF08338 Domain of unknown function (DUF1731) LC20_03719 PF00005 ABC transporter LC20_03720 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03721 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03722 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_03724 PF02441 Flavoprotein LC20_03725 PF00156 Phosphoribosyl transferase domain LC20_03726 PF02674 Colicin V production protein LC20_03727 PF05036 Sporulation related domain LC20_03728 PF02875 Mur ligase family, glutamate ligase domain LC20_03728 PF08245 Mur ligase middle domain LC20_03729 PF01039 Carboxyl transferase domain LC20_03729 PF17848 Acetyl-coA carboxylase zinc finger domain LC20_03730 PF09335 SNARE associated Golgi protein LC20_03731 PF01416 tRNA pseudouridine synthase LC20_03732 PF02774 Semialdehyde dehydrogenase, dimerisation domain LC20_03732 PF01118 Semialdehyde dehydrogenase, NAD binding domain LC20_03733 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LC20_03733 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LC20_03733 PF11890 Domain of unknown function (DUF3410) LC20_03736 PF00892 EamA-like transporter family LC20_03740 PF00155 Aminotransferase class I and II LC20_03741 PF00578 AhpC/TSA family LC20_03743 PF11412 Disulphide bond corrector protein DsbC LC20_03743 PF02683 Cytochrome C biogenesis protein transmembrane region LC20_03746 PF03600 Citrate transporter LC20_03748 PF00328 Histidine phosphatase superfamily (branch 2) LC20_03750 PF00356 Bacterial regulatory proteins, lacI family LC20_03751 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LC20_03752 PF02378 Phosphotransferase system, EIIC LC20_03753 PF00232 Glycosyl hydrolase family 1 LC20_03754 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LC20_03756 PF01177 Asp/Glu/Hydantoin racemase LC20_03762 PF00990 Diguanylate cyclase, GGDEF domain LC20_03762 PF17151 Periplasmic sensor domain LC20_03763 PF02801 Beta-ketoacyl synthase, C-terminal domain LC20_03763 PF00109 Beta-ketoacyl synthase, N-terminal domain LC20_03764 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LC20_03764 PF01266 FAD dependent oxidoreductase LC20_03765 PF08891 YfcL protein LC20_03767 PF04315 Elongation factor P hydroxylase LC20_03768 PF01925 Sulfite exporter TauE/SafE LC20_03769 PF03411 Penicillin-insensitive murein endopeptidase LC20_03770 PF01264 Chorismate synthase LC20_03771 PF05175 Methyltransferase small domain LC20_03772 PF01713 Smr domain LC20_03773 PF00300 Histidine phosphatase superfamily (branch 1) LC20_03775 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LC20_03775 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LC20_03775 PF00378 Enoyl-CoA hydratase/isomerase LC20_03776 PF00108 Thiolase, N-terminal domain LC20_03776 PF02803 Thiolase, C-terminal domain LC20_03777 PF04175 Protein of unknown function (DUF406) LC20_03779 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LC20_03781 PF04333 MlaA lipoprotein LC20_03782 PF03918 Cytochrome C biogenesis protein LC20_03783 PF03918 Cytochrome C biogenesis protein LC20_03785 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LC20_03785 PF01578 Cytochrome C assembly protein LC20_03786 PF03100 CcmE LC20_03787 PF04995 Heme exporter protein D (CcmD) LC20_03788 PF01578 Cytochrome C assembly protein LC20_03790 PF03379 CcmB protein LC20_03791 PF00005 ABC transporter LC20_03794 PF00419 Fimbrial protein LC20_03794 PF09222 Fimbrial adhesin F17-AG, lectin domain LC20_03795 PF13953 PapC C-terminal domain LC20_03795 PF13954 PapC N-terminal domain LC20_03795 PF00577 Outer membrane usher protein LC20_03798 PF00419 Fimbrial protein LC20_03799 PF03831 PhnA domain LC20_03799 PF08274 PhnA Zinc-Ribbon LC20_03801 PF03551 Transcriptional regulator PadR-like family LC20_03803 PF00232 Glycosyl hydrolase family 1 LC20_03805 PF02378 Phosphotransferase system, EIIC LC20_03805 PF00367 phosphotransferase system, EIIB LC20_03806 PF00356 Bacterial regulatory proteins, lacI family LC20_03807 PF04264 YceI-like domain LC20_03808 PF01292 Prokaryotic cytochrome b561 LC20_03809 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LC20_03812 PF00005 ABC transporter LC20_03815 PF07690 Major Facilitator Superfamily LC20_03817 PF07969 Amidohydrolase family LC20_03818 PF00324 Amino acid permease LC20_03819 PF13406 Transglycosylase SLT domain LC20_03824 PF00005 ABC transporter LC20_03825 PF01810 LysE type translocator LC20_03827 PF04966 Carbohydrate-selective porin, OprB family LC20_03828 PF00232 Glycosyl hydrolase family 1 LC20_03831 PF00874 PRD domain LC20_03831 PF03123 CAT RNA binding domain LC20_03833 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_03833 PF00384 Molybdopterin oxidoreductase LC20_03833 PF01568 Molydopterin dinucleotide binding domain LC20_03835 PF12800 4Fe-4S binding domain LC20_03835 PF13247 4Fe-4S dicluster domain LC20_03838 PF02613 Nitrate reductase delta subunit LC20_03843 PF01292 Prokaryotic cytochrome b561 LC20_03847 PF07350 Protein of unknown function (DUF1479) LC20_03849 PF07694 5TMR of 5TMR-LYT LC20_03849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_03849 PF06580 Histidine kinase LC20_03850 PF04397 LytTr DNA-binding domain LC20_03850 PF00072 Response regulator receiver domain LC20_03853 PF07690 Major Facilitator Superfamily LC20_03858 PF03466 LysR substrate binding domain LC20_03858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_03861 PF00248 Aldo/keto reductase family LC20_03864 PF01566 Natural resistance-associated macrophage protein LC20_03866 PF07662 Na+ dependent nucleoside transporter C-terminus LC20_03866 PF01773 Na+ dependent nucleoside transporter N-terminus LC20_03866 PF07670 Nucleoside recognition LC20_03867 PF00749 tRNA synthetases class I (E and Q), catalytic domain LC20_03871 PF12843 Putative quorum-sensing-regulated virulence factor LC20_03873 PF04354 ZipA, C-terminal FtsZ-binding domain LC20_03877 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LC20_03878 PF04865 Baseplate J-like protein LC20_03888 PF04984 Phage tail sheath protein subtilisin-like domain LC20_03888 PF17482 Phage tail sheath C-terminal domain LC20_03897 PF04860 Phage portal protein LC20_03898 PF03354 Phage Terminase LC20_03904 PF00182 Chitinase class I LC20_03908 PF01555 DNA methylase LC20_03911 PF06530 Phage antitermination protein Q LC20_03912 PF06147 Protein of unknown function (DUF968) LC20_03916 PF05869 DNA N-6-adenine-methyltransferase (Dam) LC20_03918 PF03354 Phage Terminase LC20_03922 PF01381 Helix-turn-helix LC20_03922 PF00717 Peptidase S24-like LC20_03928 PF04381 Putative exonuclease, RdgC LC20_03944 PF00589 Phage integrase family LC20_03944 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain LC20_03945 PF00291 Pyridoxal-phosphate dependent enzyme LC20_03947 PF00381 PTS HPr component phosphorylation site LC20_03948 PF05524 PEP-utilising enzyme, N-terminal LC20_03948 PF00391 PEP-utilising enzyme, mobile domain LC20_03948 PF02896 PEP-utilising enzyme, TIM barrel domain LC20_03949 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LC20_03950 PF16527 Two-component sensor protein CpxA, periplasmic domain LC20_03950 PF00672 HAMP domain LC20_03950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_03950 PF00512 His Kinase A (phospho-acceptor) domain LC20_03951 PF00486 Transcriptional regulatory protein, C terminal LC20_03951 PF00072 Response regulator receiver domain LC20_03953 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_03954 PF00005 ABC transporter LC20_03954 PF02687 FtsX-like permease family LC20_03954 PF12704 MacB-like periplasmic core domain LC20_03955 PF00291 Pyridoxal-phosphate dependent enzyme LC20_03956 PF00005 ABC transporter LC20_03959 PF00528 Binding-protein-dependent transport system inner membrane component LC20_03961 PF07690 Major Facilitator Superfamily LC20_03963 PF01418 Helix-turn-helix domain, rpiR family LC20_03963 PF01380 SIS domain LC20_03965 PF04074 YhcH/YjgK/YiaL LC20_03966 PF00480 ROK family LC20_03967 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LC20_03968 PF00701 Dihydrodipicolinate synthetase family LC20_03969 PF04261 Dyp-type peroxidase family LC20_03970 PF06572 Protein of unknown function (DUF1131) LC20_03972 PF04076 Bacterial OB fold (BOF) protein LC20_03974 PF00581 Rhodanese-like domain LC20_03977 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LC20_03977 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LC20_03979 PF02653 Branched-chain amino acid transport system / permease component LC20_03980 PF00005 ABC transporter LC20_03981 PF13407 Periplasmic binding protein domain LC20_03982 PF00583 Acetyltransferase (GNAT) family LC20_03983 PF01218 Coproporphyrinogen III oxidase LC20_03984 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LC20_03988 PF00293 NUDIX domain LC20_03989 PF03264 NapC/NirT cytochrome c family, N-terminal region LC20_03990 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LC20_03991 PF10518 TAT (twin-arginine translocation) pathway signal sequence LC20_03991 PF01568 Molydopterin dinucleotide binding domain LC20_03991 PF00384 Molybdopterin oxidoreductase LC20_03991 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_03992 PF03927 NapD protein LC20_03994 PF00072 Response regulator receiver domain LC20_03994 PF00196 Bacterial regulatory proteins, luxR family LC20_03997 PF00873 AcrB/AcrD/AcrF family LC20_04001 PF03960 ArsC family LC20_04002 PF07687 Peptidase dimerisation domain LC20_04002 PF01546 Peptidase family M20/M25/M40 LC20_04003 PF02557 D-alanyl-D-alanine carboxypeptidase LC20_04004 PF13980 Uncharacterised protein family (UPF0370) LC20_04005 PF02230 Phospholipase/Carboxylesterase LC20_04009 PF17176 tRNA-binding domain LC20_04009 PF05127 Helicase LC20_04009 PF13718 GNAT acetyltransferase 2 LC20_04010 PF04284 Protein of unknown function (DUF441) LC20_04011 PF04228 Putative neutral zinc metallopeptidase LC20_04012 PF01259 SAICAR synthetase LC20_04013 PF06804 NlpB/DapX lipoprotein LC20_04014 PF00701 Dihydrodipicolinate synthetase family LC20_04015 PF01842 ACT domain LC20_04016 PF00578 AhpC/TSA family LC20_04017 PF01594 AI-2E family transporter LC20_04019 PF01435 Peptidase family M48 LC20_04019 PF07720 Tetratricopeptide repeat LC20_04020 PF03960 ArsC family LC20_04021 PF00308 Bacterial dnaA protein LC20_04022 PF00860 Permease family LC20_04025 PF02769 AIR synthase related protein, C-terminal domain LC20_04025 PF00586 AIR synthase related protein, N-terminal domain LC20_04026 PF00551 Formyl transferase LC20_04027 PF13302 Acetyltransferase (GNAT) domain LC20_04028 PF00005 ABC transporter LC20_04029 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04030 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04031 PF17941 Polyphosphate kinase C-terminal domain 1 LC20_04031 PF13089 Polyphosphate kinase N-terminal domain LC20_04031 PF02503 Polyphosphate kinase middle domain LC20_04031 PF13090 Polyphosphate kinase C-terminal domain 2 LC20_04032 PF02541 Ppx/GppA phosphatase family LC20_04036 PF05231 MASE1 LC20_04036 PF08447 PAS fold LC20_04036 PF00990 Diguanylate cyclase, GGDEF domain LC20_04036 PF00563 EAL domain LC20_04036 PF13426 PAS domain LC20_04036 PF08448 PAS fold LC20_04037 PF00012 Hsp70 protein LC20_04041 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_04041 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_04042 PF13953 PapC C-terminal domain LC20_04042 PF00577 Outer membrane usher protein LC20_04042 PF13954 PapC N-terminal domain LC20_04051 PF13533 Biotin-lipoyl like LC20_04052 PF00873 AcrB/AcrD/AcrF family LC20_04053 PF00873 AcrB/AcrD/AcrF family LC20_04056 PF00512 His Kinase A (phospho-acceptor) domain LC20_04056 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_04056 PF00672 HAMP domain LC20_04057 PF00486 Transcriptional regulatory protein, C terminal LC20_04057 PF00072 Response regulator receiver domain LC20_04058 PF07411 Domain of unknown function (DUF1508) LC20_04064 PF03608 PTS system enzyme II sorbitol-specific factor LC20_04065 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LC20_04065 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LC20_04066 PF03829 PTS system glucitol/sorbitol-specific IIA component LC20_04067 PF00106 short chain dehydrogenase LC20_04068 PF06923 Glucitol operon activator protein (GutM) LC20_04069 PF08220 DeoR-like helix-turn-helix domain LC20_04069 PF00455 DeoR C terminal sensor domain LC20_04070 PF01380 SIS domain LC20_04070 PF00571 CBS domain LC20_04073 PF08543 Phosphomethylpyrimidine kinase LC20_04077 PF00958 GMP synthase C terminal domain LC20_04077 PF00117 Glutamine amidotransferase class-I LC20_04077 PF02540 NAD synthase LC20_04079 PF00478 IMP dehydrogenase / GMP reductase domain LC20_04079 PF00571 CBS domain LC20_04082 PF07191 zinc-ribbons LC20_04084 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LC20_04084 PF01926 50S ribosome-binding GTPase LC20_04086 PF13360 PQQ-like domain LC20_04087 PF09976 Tetratricopeptide repeat-like domain LC20_04088 PF13393 Histidyl-tRNA synthetase LC20_04088 PF03129 Anticodon binding domain LC20_04089 PF04551 GcpE protein LC20_04090 PF13464 Domain of unknown function (DUF4115) LC20_04092 PF04055 Radical SAM superfamily LC20_04093 PF00334 Nucleoside diphosphate kinase LC20_04097 PF00912 Transglycosylase LC20_04097 PF00905 Penicillin binding protein transpeptidase domain LC20_04097 PF06832 Penicillin-Binding Protein C-terminus Family LC20_04098 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LC20_04098 PF17962 Bacterial macroglobulin domain 6 LC20_04098 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LC20_04098 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LC20_04098 PF01835 MG2 domain LC20_04098 PF07678 A-macroglobulin TED domain LC20_04098 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LC20_04098 PF00207 Alpha-2-macroglobulin family LC20_04098 PF07703 Alpha-2-macroglobulin bait region domain LC20_04101 PF14581 SseB protein C-terminal domain LC20_04101 PF07179 SseB protein N-terminal domain LC20_04102 PF12404 Peptidase LC20_04102 PF00883 Cytosol aminopeptidase family, catalytic domain LC20_04103 PF04384 Iron-sulphur cluster assembly LC20_04104 PF00111 2Fe-2S iron-sulfur cluster binding domain LC20_04106 PF00012 Hsp70 protein LC20_04107 PF00226 DnaJ domain LC20_04107 PF07743 HSCB C-terminal oligomerisation domain LC20_04108 PF01521 Iron-sulphur cluster biosynthesis LC20_04109 PF01592 NifU-like N terminal domain LC20_04110 PF00266 Aminotransferase class-V LC20_04111 PF02082 Transcriptional regulator LC20_04112 PF00588 SpoU rRNA Methylase family LC20_04113 PF00459 Inositol monophosphatase family LC20_04114 PF03824 High-affinity nickel-transport protein LC20_04115 PF06226 Protein of unknown function (DUF1007) LC20_04118 PF00874 PRD domain LC20_04119 PF12832 MFS_1 like family LC20_04120 PF00464 Serine hydroxymethyltransferase LC20_04121 PF00042 Globin LC20_04121 PF00970 Oxidoreductase FAD-binding domain LC20_04121 PF00175 Oxidoreductase NAD-binding domain LC20_04122 PF14502 Helix-turn-helix domain LC20_04122 PF14503 YhfZ C-terminal domain LC20_04124 PF01168 Alanine racemase, N-terminal domain LC20_04125 PF02126 Phosphotriesterase family LC20_04126 PF10941 Protein of unknown function DUF2620 LC20_04127 PF10797 Protein of unknown function LC20_04128 PF00543 Nitrogen regulatory protein P-II LC20_04129 PF00795 Carbon-nitrogen hydrolase LC20_04129 PF02540 NAD synthase LC20_04130 PF00072 Response regulator receiver domain LC20_04130 PF00158 Sigma-54 interaction domain LC20_04131 PF13942 YfhG lipoprotein LC20_04132 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_04132 PF00512 His Kinase A (phospho-acceptor) domain LC20_04135 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LC20_04135 PF02769 AIR synthase related protein, C-terminal domain LC20_04135 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LC20_04136 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_04136 PF01464 Transglycosylase SLT domain LC20_04137 PF14437 MafB19-like deaminase LC20_04144 PF01418 Helix-turn-helix domain, rpiR family LC20_04144 PF01380 SIS domain LC20_04145 PF12838 4Fe-4S dicluster domain LC20_04146 PF02447 GntP family permease LC20_04147 PF01648 4'-phosphopantetheinyl transferase superfamily LC20_04150 PF02565 Recombination protein O C terminal LC20_04150 PF11967 Recombination protein O N terminal LC20_04151 PF07650 KH domain LC20_04151 PF01926 50S ribosome-binding GTPase LC20_04152 PF00035 Double-stranded RNA binding motif LC20_04152 PF14622 Ribonuclease-III-like LC20_04153 PF10502 Signal peptidase, peptidase S26 LC20_04154 PF00009 Elongation factor Tu GTP binding domain LC20_04154 PF06421 GTP-binding protein LepA C-terminus LC20_04154 PF03144 Elongation factor Tu domain 2 LC20_04154 PF00679 Elongation factor G C-terminus LC20_04159 PF17188 MucB/RseB C-terminal domain LC20_04159 PF03888 MucB/RseB N-terminal domain LC20_04160 PF03873 Anti sigma-E protein RseA, C-terminal domain LC20_04160 PF03872 Anti sigma-E protein RseA, N-terminal domain LC20_04161 PF08281 Sigma-70, region 4 LC20_04161 PF04542 Sigma-70 region 2 LC20_04162 PF00890 FAD binding domain LC20_04162 PF02910 Fumarate reductase flavoprotein C-term LC20_04163 PF05175 Methyltransferase small domain LC20_04164 PF00271 Helicase conserved C-terminal domain LC20_04164 PF00270 DEAD/DEAH box helicase LC20_04165 PF12796 Ankyrin repeats (3 copies) LC20_04168 PF01228 Glycine radical LC20_04170 PF03167 Uracil DNA glycosylase superfamily LC20_04171 PF01025 GrpE LC20_04172 PF01513 ATP-NAD kinase LC20_04173 PF02463 RecF/RecN/SMC N terminal domain LC20_04174 PF04355 SmpA / OmlA family LC20_04175 PF03658 RnfH family Ubiquitin LC20_04176 PF03364 Polyketide cyclase / dehydrase and lipid transport LC20_04177 PF01668 SmpB protein LC20_04180 PF12728 Helix-turn-helix domain LC20_04180 PF00145 C-5 cytosine-specific DNA methylase LC20_04185 PF02413 Caudovirales tail fibre assembly protein, lambda gpK LC20_04187 PF08400 Prophage tail fibre N-terminal LC20_04187 PF03335 Phage tail fibre repeat LC20_04187 PF07484 Phage Tail Collar Domain LC20_04209 PF05840 Bacteriophage replication gene A protein (GPA) LC20_04214 PF06892 Phage regulatory protein CII (CP76) LC20_04217 PF02899 Phage integrase, N-terminal SAM-like domain LC20_04217 PF00589 Phage integrase family LC20_04220 PF06183 DinI-like family LC20_04228 PF01965 DJ-1/PfpI family LC20_04230 PF06711 Protein of unknown function (DUF1198) LC20_04231 PF09400 Protein of unknown function (DUF2002) LC20_04233 PF06392 Acid shock protein repeat LC20_04234 PF03824 High-affinity nickel-transport protein LC20_04235 PF05957 Bacterial protein of unknown function (DUF883) LC20_04237 PF00462 Glutaredoxin LC20_04238 PF07972 NrdI Flavodoxin like LC20_04239 PF02867 Ribonucleotide reductase, barrel domain LC20_04239 PF00317 Ribonucleotide reductase, all-alpha domain LC20_04239 PF08343 Ribonucleotide reductase N-terminal LC20_04240 PF00268 Ribonucleotide reductase, small chain LC20_04241 PF00571 CBS domain LC20_04241 PF00005 ABC transporter LC20_04242 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04243 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LC20_04245 PF00929 Exonuclease LC20_04246 PF00075 RNase H LC20_04247 PF08241 Methyltransferase domain LC20_04248 PF00753 Metallo-beta-lactamase superfamily LC20_04248 PF16123 Hydroxyacylglutathione hydrolase C-terminus LC20_04249 PF01476 LysM domain LC20_04249 PF01464 Transglycosylase SLT domain LC20_04250 PF03372 Endonuclease/Exonuclease/phosphatase family LC20_04251 PF07690 Major Facilitator Superfamily LC20_04252 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04252 PF03466 LysR substrate binding domain LC20_04253 PF00248 Aldo/keto reductase family LC20_04255 PF17871 AAA lid domain LC20_04255 PF00004 ATPase family associated with various cellular activities (AAA) LC20_04255 PF10431 C-terminal, D2-small domain, of ClpB protein LC20_04255 PF07724 AAA domain (Cdc48 subfamily) LC20_04255 PF02861 Clp amino terminal domain, pathogenicity island component LC20_04257 PF00849 RNA pseudouridylate synthase LC20_04257 PF01479 S4 domain LC20_04258 PF13525 Outer membrane lipoprotein LC20_04259 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LC20_04260 PF01817 Chorismate mutase type II LC20_04260 PF00800 Prephenate dehydratase LC20_04261 PF02153 Prephenate dehydrogenase LC20_04261 PF01817 Chorismate mutase type II LC20_04262 PF00793 DAHP synthetase I family LC20_04263 PF00072 Response regulator receiver domain LC20_04263 PF04397 LytTr DNA-binding domain LC20_04264 PF03605 Anaerobic c4-dicarboxylate membrane transporter LC20_04265 PF04338 Protein of unknown function, DUF481 LC20_04267 PF01245 Ribosomal protein L19 LC20_04268 PF01746 tRNA (Guanine-1)-methyltransferase LC20_04269 PF05239 PRC-barrel domain LC20_04269 PF01782 RimM N-terminal domain LC20_04270 PF00886 Ribosomal protein S16 LC20_04271 PF00448 SRP54-type protein, GTPase domain LC20_04271 PF02881 SRP54-type protein, helical bundle domain LC20_04271 PF02978 Signal peptide binding domain LC20_04272 PF01578 Cytochrome C assembly protein LC20_04273 PF03471 Transporter associated domain LC20_04273 PF00571 CBS domain LC20_04273 PF01595 Cyclin M transmembrane N-terminal domain LC20_04274 PF02664 S-Ribosylhomocysteinase (LuxS) LC20_04275 PF04262 Glutamate-cysteine ligase LC20_04277 PF09335 SNARE associated Golgi protein LC20_04278 PF13419 Haloacid dehalogenase-like hydrolase LC20_04281 PF02599 Global regulator protein family LC20_04282 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LC20_04282 PF01411 tRNA synthetases class II (A) LC20_04282 PF02272 DHHA1 domain LC20_04283 PF02631 RecX family LC20_04284 PF00154 recA bacterial DNA recombination protein LC20_04285 PF02464 Competence-damaged protein LC20_04286 PF07690 Major Facilitator Superfamily LC20_04290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_04290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_04291 PF02780 Transketolase, C-terminal domain LC20_04291 PF02779 Transketolase, pyrimidine binding domain LC20_04292 PF00456 Transketolase, thiamine diphosphate binding domain LC20_04293 PF02653 Branched-chain amino acid transport system / permease component LC20_04294 PF00005 ABC transporter LC20_04296 PF00356 Bacterial regulatory proteins, lacI family LC20_04297 PF02613 Nitrate reductase delta subunit LC20_04298 PF04976 DMSO reductase anchor subunit (DmsC) LC20_04299 PF12800 4Fe-4S binding domain LC20_04299 PF13247 4Fe-4S dicluster domain LC20_04300 PF00384 Molybdopterin oxidoreductase LC20_04300 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_04300 PF01568 Molydopterin dinucleotide binding domain LC20_04301 PF00596 Class II Aldolase and Adducin N-terminal domain LC20_04302 PF00455 DeoR C terminal sensor domain LC20_04302 PF08220 DeoR-like helix-turn-helix domain LC20_04304 PF00005 ABC transporter LC20_04305 PF02653 Branched-chain amino acid transport system / permease component LC20_04307 PF02653 Branched-chain amino acid transport system / permease component LC20_04308 PF01261 Xylose isomerase-like TIM barrel LC20_04309 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_04309 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_04311 PF05681 Fumarate hydratase (Fumerase) LC20_04311 PF05683 Fumarase C-terminus LC20_04314 PF13458 Periplasmic binding protein LC20_04315 PF02653 Branched-chain amino acid transport system / permease component LC20_04316 PF11862 Domain of unknown function (DUF3382) LC20_04316 PF02653 Branched-chain amino acid transport system / permease component LC20_04317 PF00005 ABC transporter LC20_04318 PF00005 ABC transporter LC20_04322 PF00795 Carbon-nitrogen hydrolase LC20_04323 PF04198 Putative sugar-binding domain LC20_04323 PF13936 Helix-turn-helix domain LC20_04324 PF00106 short chain dehydrogenase LC20_04325 PF03610 PTS system fructose IIA component LC20_04326 PF03830 PTS system sorbose subfamily IIB component LC20_04329 PF03609 PTS system sorbose-specific iic component LC20_04330 PF03613 PTS system mannose/fructose/sorbose family IID component LC20_04331 PF00107 Zinc-binding dehydrogenase LC20_04331 PF08240 Alcohol dehydrogenase GroES-like domain LC20_04332 PF01022 Bacterial regulatory protein, arsR family LC20_04333 PF14492 Elongation Factor G, domain II LC20_04333 PF03144 Elongation factor Tu domain 2 LC20_04333 PF00009 Elongation factor Tu GTP binding domain LC20_04333 PF03764 Elongation factor G, domain IV LC20_04333 PF00679 Elongation factor G C-terminus LC20_04334 PF02705 K+ potassium transporter LC20_04338 PF00005 ABC transporter LC20_04339 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04340 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04347 PF00291 Pyridoxal-phosphate dependent enzyme LC20_04348 PF02447 GntP family permease LC20_04349 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04349 PF03466 LysR substrate binding domain LC20_04350 PF00005 ABC transporter LC20_04350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_04351 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_04351 PF00005 ABC transporter LC20_04353 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04354 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_04356 PF13378 Enolase C-terminal domain-like LC20_04356 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LC20_04359 PF14376 Haem-binding domain LC20_04359 PF00034 Cytochrome c LC20_04359 PF03150 Di-haem cytochrome c peroxidase LC20_04360 PF00155 Aminotransferase class I and II LC20_04361 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_04365 PF02801 Beta-ketoacyl synthase, C-terminal domain LC20_04365 PF00109 Beta-ketoacyl synthase, N-terminal domain LC20_04366 PF02321 Outer membrane efflux protein LC20_04367 PF12704 MacB-like periplasmic core domain LC20_04367 PF00005 ABC transporter LC20_04367 PF02687 FtsX-like permease family LC20_04368 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_04369 PF03412 Peptidase C39 family LC20_04369 PF00664 ABC transporter transmembrane region LC20_04369 PF00005 ABC transporter LC20_04371 PF01323 DSBA-like thioredoxin domain LC20_04371 PF00085 Thioredoxin LC20_04374 PF00419 Fimbrial protein LC20_04375 PF00419 Fimbrial protein LC20_04377 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_04377 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_04378 PF00577 Outer membrane usher protein LC20_04378 PF13953 PapC C-terminal domain LC20_04378 PF13954 PapC N-terminal domain LC20_04379 PF00419 Fimbrial protein LC20_04380 PF00419 Fimbrial protein LC20_04384 PF05188 MutS domain II LC20_04384 PF01624 MutS domain I LC20_04384 PF00488 MutS domain V LC20_04384 PF05190 MutS family domain IV LC20_04384 PF05192 MutS domain III LC20_04386 PF04542 Sigma-70 region 2 LC20_04386 PF00140 Sigma-70 factor, region 1.2 LC20_04386 PF04539 Sigma-70 region 3 LC20_04386 PF04545 Sigma-70, region 4 LC20_04387 PF01551 Peptidase family M23 LC20_04387 PF01476 LysM domain LC20_04390 PF01975 Survival protein SurE LC20_04391 PF01142 tRNA pseudouridine synthase D (TruD) LC20_04392 PF02542 YgbB family LC20_04393 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LC20_04394 PF04977 Septum formation initiator LC20_04395 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_04396 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04397 PF00005 ABC transporter LC20_04401 PF00009 Elongation factor Tu GTP binding domain LC20_04402 PF01507 Phosphoadenosine phosphosulfate reductase family LC20_04403 PF10414 Sirohaem synthase dimerisation region LC20_04403 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LC20_04403 PF14824 Sirohaem biosynthesis protein central LC20_04404 PF04389 Peptidase family M28 LC20_04405 PF01507 Phosphoadenosine phosphosulfate reductase family LC20_04406 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LC20_04406 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LC20_04407 PF00175 Oxidoreductase NAD-binding domain LC20_04407 PF00258 Flavodoxin LC20_04407 PF00667 FAD binding domain LC20_04409 PF01242 6-pyruvoyl tetrahydropterin synthase LC20_04410 PF04055 Radical SAM superfamily LC20_04411 PF00080 Copper/zinc superoxide dismutase (SODC) LC20_04412 PF00113 Enolase, C-terminal TIM barrel domain LC20_04412 PF03952 Enolase, N-terminal domain LC20_04413 PF06418 CTP synthase N-terminus LC20_04413 PF00117 Glutamine amidotransferase class-I LC20_04415 PF03819 MazG nucleotide pyrophosphohydrolase domain LC20_04417 PF13291 ACT domain LC20_04417 PF04607 Region found in RelA / SpoT proteins LC20_04417 PF02824 TGS domain LC20_04418 PF01938 TRAM domain LC20_04418 PF05958 tRNA (Uracil-5-)-methyltransferase LC20_04419 PF00072 Response regulator receiver domain LC20_04419 PF01627 Hpt domain LC20_04419 PF00512 His Kinase A (phospho-acceptor) domain LC20_04419 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LC20_04419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_04419 PF00672 HAMP domain LC20_04420 PF00595 PDZ domain LC20_04421 PF13286 Phosphohydrolase-associated domain LC20_04421 PF01966 HD domain LC20_04422 PF01048 Phosphorylase superfamily LC20_04423 PF01497 Periplasmic binding protein LC20_04424 PF03458 UPF0126 domain LC20_04426 PF01521 Iron-sulphur cluster biosynthesis LC20_04427 PF00654 Voltage gated chloride channel LC20_04429 PF00202 Aminotransferase class-III LC20_04430 PF01032 FecCD transport family LC20_04431 PF01497 Periplasmic binding protein LC20_04432 PF00005 ABC transporter LC20_04433 PF14814 Bifunctional transglycosylase second domain LC20_04433 PF00905 Penicillin binding protein transpeptidase domain LC20_04433 PF00912 Transglycosylase LC20_04433 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal LC20_04435 PF02834 LigT like Phosphoesterase LC20_04436 PF03749 Sugar fermentation stimulation protein RE domain LC20_04436 PF17746 SfsA N-terminal OB domain LC20_04437 PF01258 Prokaryotic dksA/traR C4-type zinc finger LC20_04438 PF00749 tRNA synthetases class I (E and Q), catalytic domain LC20_04439 PF12626 Polymerase A arginine-rich C-terminus LC20_04439 PF12627 Probable RNA and SrmB- binding site of polymerase A LC20_04439 PF01743 Poly A polymerase head domain LC20_04440 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LC20_04441 PF02548 Ketopantoate hydroxymethyltransferase LC20_04442 PF02569 Pantoate-beta-alanine ligase LC20_04443 PF02261 Aspartate decarboxylase LC20_04444 PF01522 Polysaccharide deacetylase LC20_04445 PF01061 ABC-2 type transporter LC20_04446 PF00005 ABC transporter LC20_04447 PF00484 Carbonic anhydrase LC20_04448 PF00156 Phosphoribosyl transferase domain LC20_04449 PF00394 Multicopper oxidase LC20_04449 PF07731 Multicopper oxidase LC20_04449 PF10518 TAT (twin-arginine translocation) pathway signal sequence LC20_04449 PF07732 Multicopper oxidase LC20_04450 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) LC20_04451 PF17284 Spermidine synthase tetramerisation domain LC20_04452 PF02675 S-adenosylmethionine decarboxylase LC20_04453 PF00892 EamA-like transporter family LC20_04456 PF06062 Uncharacterised protein family (UPF0231) LC20_04457 PF06434 Aconitate hydratase 2 N-terminus LC20_04457 PF11791 Aconitate B N-terminal domain LC20_04457 PF00330 Aconitase family (aconitate hydratase) LC20_04459 PF07715 TonB-dependent Receptor Plug Domain LC20_04459 PF00593 TonB dependent receptor LC20_04469 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_04469 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LC20_04470 PF00364 Biotin-requiring enzyme LC20_04470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LC20_04470 PF02817 e3 binding domain LC20_04471 PF00456 Transketolase, thiamine diphosphate binding domain LC20_04471 PF17831 Pyruvate dehydrogenase E1 component middle domain LC20_04472 PF00392 Bacterial regulatory proteins, gntR family LC20_04472 PF07729 FCD domain LC20_04474 PF00324 Amino acid permease LC20_04478 PF02368 Bacterial Ig-like domain (group 2) LC20_04478 PF01476 LysM domain LC20_04478 PF07979 Intimin C-type lectin domain LC20_04478 PF11924 Inverse autotransporter, beta-domain LC20_04478 PF02369 Bacterial Ig-like domain (group 1) LC20_04481 PF17113 Regulatory signalling modulator protein AmpE LC20_04482 PF01510 N-acetylmuramoyl-L-alanine amidase LC20_04483 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LC20_04483 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LC20_04487 PF00872 Transposase, Mutator family LC20_04488 PF00478 IMP dehydrogenase / GMP reductase domain LC20_04489 PF01121 Dephospho-CoA kinase LC20_04490 PF07072 Cell division protein LC20_04491 PF03884 DNA gyrase inhibitor YacG LC20_04492 PF00293 NUDIX domain LC20_04494 PF07516 SecA Wing and Scaffold domain LC20_04494 PF02810 SEC-C motif LC20_04494 PF01043 SecA preprotein cross-linking domain LC20_04494 PF07517 SecA DEAD-like domain LC20_04495 PF06558 Secretion monitor precursor protein (SecM) LC20_04497 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LC20_04498 PF00091 Tubulin/FtsZ family, GTPase domain LC20_04498 PF12327 FtsZ family, C-terminal domain LC20_04499 PF02491 SHS2 domain inserted in FTSA LC20_04500 PF08478 POTRA domain, FtsQ-type LC20_04500 PF03799 Cell division protein FtsQ LC20_04501 PF07478 D-ala D-ala ligase C-terminus LC20_04501 PF01820 D-ala D-ala ligase N-terminus LC20_04502 PF01225 Mur ligase family, catalytic domain LC20_04502 PF02875 Mur ligase family, glutamate ligase domain LC20_04502 PF08245 Mur ligase middle domain LC20_04504 PF03033 Glycosyltransferase family 28 N-terminal domain LC20_04504 PF04101 Glycosyltransferase family 28 C-terminal domain LC20_04505 PF01098 Cell cycle protein LC20_04506 PF02875 Mur ligase family, glutamate ligase domain LC20_04506 PF08245 Mur ligase middle domain LC20_04507 PF00953 Glycosyl transferase family 4 LC20_04507 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LC20_04508 PF08245 Mur ligase middle domain LC20_04508 PF02875 Mur ligase family, glutamate ligase domain LC20_04508 PF01225 Mur ligase family, catalytic domain LC20_04509 PF01225 Mur ligase family, catalytic domain LC20_04509 PF08245 Mur ligase middle domain LC20_04509 PF02875 Mur ligase family, glutamate ligase domain LC20_04510 PF03717 Penicillin-binding Protein dimerisation domain LC20_04510 PF00905 Penicillin binding protein transpeptidase domain LC20_04511 PF04999 Cell division protein FtsL LC20_04512 PF01795 MraW methylase family LC20_04513 PF02381 MraZ protein, putative antitoxin-like LC20_04514 PF06610 L-alanine exporter LC20_04516 PF00356 Bacterial regulatory proteins, lacI family LC20_04516 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LC20_04517 PF10369 Small subunit of acetolactate synthase LC20_04518 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_04518 PF00205 Thiamine pyrophosphate enzyme, central domain LC20_04518 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_04520 PF00501 AMP-binding enzyme LC20_04521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04521 PF03466 LysR substrate binding domain LC20_04523 PF00682 HMGL-like LC20_04523 PF08502 LeuA allosteric (dimerisation) domain LC20_04524 PF00180 Isocitrate/isopropylmalate dehydrogenase LC20_04525 PF00330 Aconitase family (aconitate hydratase) LC20_04526 PF00694 Aconitase C-terminal domain LC20_04527 PF01212 Beta-eliminating lyase LC20_04528 PF03222 Tryptophan/tyrosine permease family LC20_04529 PF07690 Major Facilitator Superfamily LC20_04532 PF04055 Radical SAM superfamily LC20_04533 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_04533 PF12793 Sugar transport-related sRNA regulator N-term LC20_04537 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04538 PF00005 ABC transporter LC20_04539 PF09335 SNARE associated Golgi protein LC20_04542 PF18337 RapA N-terminal Tudor like domain LC20_04542 PF18339 RapA N-terminal Tudor like domain 1 LC20_04542 PF00176 SNF2 family N-terminal domain LC20_04542 PF12137 RNA polymerase recycling family C-terminal LC20_04542 PF00271 Helicase conserved C-terminal domain LC20_04543 PF00849 RNA pseudouridylate synthase LC20_04545 PF05099 Tellurite resistance protein TerB LC20_04545 PF00226 DnaJ domain LC20_04546 PF04453 LPS transport system D LC20_04546 PF03968 OstA-like protein LC20_04547 PF09312 SurA N-terminal domain LC20_04547 PF00639 PPIC-type PPIASE domain LC20_04548 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LC20_04549 PF00398 Ribosomal RNA adenine dimethylase LC20_04550 PF04379 ApaG domain LC20_04551 PF00149 Calcineurin-like phosphoesterase LC20_04552 PF00186 Dihydrofolate reductase LC20_04553 PF12821 Threonine/Serine exporter, ThrE LC20_04554 PF06738 Putative threonine/serine exporter LC20_04556 PF01810 LysE type translocator LC20_04557 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LC20_04557 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LC20_04557 PF02142 MGS-like domain LC20_04558 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LC20_04558 PF00117 Glutamine amidotransferase class-I LC20_04559 PF05173 Dihydrodipicolinate reductase, C-terminus LC20_04559 PF01113 Dihydrodipicolinate reductase, N-terminus LC20_04561 PF02401 LytB protein LC20_04562 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LC20_04563 PF01252 Signal peptidase (SPase) II LC20_04564 PF00133 tRNA synthetases class I (I, L, M and V) LC20_04564 PF06827 Zinc finger found in FPG and IleRS LC20_04564 PF08264 Anticodon-binding domain of tRNA LC20_04565 PF06574 FAD synthetase LC20_04565 PF01687 Riboflavin kinase LC20_04566 PF01649 Ribosomal protein S20 LC20_04567 PF03466 LysR substrate binding domain LC20_04567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04568 PF06965 Na+/H+ antiporter 1 LC20_04569 PF00226 DnaJ domain LC20_04569 PF00684 DnaJ central domain LC20_04569 PF01556 DnaJ C terminal domain LC20_04570 PF00012 Hsp70 protein LC20_04571 PF01184 GPR1/FUN34/yaaH family LC20_04573 PF07690 Major Facilitator Superfamily LC20_04574 PF00994 Probable molybdopterin binding domain LC20_04576 PF00923 Transaldolase/Fructose-6-phosphate aldolase LC20_04577 PF03883 Peroxide stress protein YaaA LC20_04578 PF14821 Threonine synthase N terminus LC20_04578 PF00291 Pyridoxal-phosphate dependent enzyme LC20_04579 PF00288 GHMP kinases N terminal domain LC20_04579 PF08544 GHMP kinases C terminal LC20_04580 PF00742 Homoserine dehydrogenase LC20_04580 PF03447 Homoserine dehydrogenase, NAD binding domain LC20_04580 PF01842 ACT domain LC20_04580 PF00696 Amino acid kinase family LC20_04580 PF13840 ACT domain LC20_04582 PF00072 Response regulator receiver domain LC20_04582 PF00486 Transcriptional regulatory protein, C terminal LC20_04583 PF05981 CreA protein LC20_04584 PF12833 Helix-turn-helix domain LC20_04584 PF06445 GyrI-like small molecule binding domain LC20_04585 PF00300 Histidine phosphatase superfamily (branch 1) LC20_04586 PF01931 Protein of unknown function DUF84 LC20_04587 PF01371 Trp repressor protein LC20_04588 PF14718 Soluble lytic murein transglycosylase L domain LC20_04588 PF01464 Transglycosylase SLT domain LC20_04589 PF00689 Cation transporting ATPase, C-terminus LC20_04589 PF00690 Cation transporter/ATPase, N-terminus LC20_04591 PF00990 Diguanylate cyclase, GGDEF domain LC20_04591 PF17152 Periplasmic sensor domain LC20_04592 PF00691 OmpA family LC20_04593 PF12848 ABC transporter LC20_04593 PF00005 ABC transporter LC20_04594 PF03466 LysR substrate binding domain LC20_04594 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04595 PF00107 Zinc-binding dehydrogenase LC20_04595 PF08240 Alcohol dehydrogenase GroES-like domain LC20_04596 PF01381 Helix-turn-helix LC20_04596 PF13521 AAA domain LC20_04599 PF18073 Rubredoxin metal binding domain LC20_04600 PF18429 Domain of unknown function (DUF5609) LC20_04601 PF10144 Bacterial virulence factor haemolysin LC20_04602 PF01048 Phosphorylase superfamily LC20_04603 PF01676 Metalloenzyme superfamily LC20_04604 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LC20_04604 PF00591 Glycosyl transferase family, a/b domain LC20_04604 PF02885 Glycosyl transferase family, helical bundle domain LC20_04605 PF01791 DeoC/LacD family aldolase LC20_04606 PF07670 Nucleoside recognition LC20_04606 PF01773 Na+ dependent nucleoside transporter N-terminus LC20_04606 PF07662 Na+ dependent nucleoside transporter C-terminus LC20_04607 PF01026 TatD related DNase LC20_04608 PF01734 Patatin-like phospholipase LC20_04609 PF07043 Protein of unknown function (DUF1328) LC20_04610 PF04972 BON domain LC20_04611 PF00009 Elongation factor Tu GTP binding domain LC20_04611 PF03144 Elongation factor Tu domain 2 LC20_04611 PF16658 Class II release factor RF3, C-terminal domain LC20_04612 PF00583 Acetyltransferase (GNAT) family LC20_04613 PF03603 DNA polymerase III psi subunit LC20_04614 PF05175 Methyltransferase small domain LC20_04614 PF08468 Methyltransferase small domain N-terminal LC20_04615 PF00248 Aldo/keto reductase family LC20_04621 PF00990 Diguanylate cyclase, GGDEF domain LC20_04627 PF13407 Periplasmic binding protein domain LC20_04627 PF00356 Bacterial regulatory proteins, lacI family LC20_04628 PF02954 Bacterial regulatory protein, Fis family LC20_04628 PF00989 PAS fold LC20_04628 PF00158 Sigma-54 interaction domain LC20_04629 PF01095 Pectinesterase LC20_04640 PF16861 Carbamoyltransferase C-terminus LC20_04640 PF02543 Carbamoyltransferase N-terminus LC20_04642 PF00391 PEP-utilising enzyme, mobile domain LC20_04642 PF00381 PTS HPr component phosphorylation site LC20_04642 PF03610 PTS system fructose IIA component LC20_04642 PF05524 PEP-utilising enzyme, N-terminal LC20_04643 PF02734 DAK2 domain LC20_04645 PF02733 Dak1 domain LC20_04647 PF00465 Iron-containing alcohol dehydrogenase LC20_04648 PF00873 AcrB/AcrD/AcrF family LC20_04649 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LC20_04652 PF13520 Amino acid permease LC20_04661 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LC20_04664 PF00325 Bacterial regulatory proteins, crp family LC20_04664 PF04198 Putative sugar-binding domain LC20_04665 PF00005 ABC transporter LC20_04666 PF02653 Branched-chain amino acid transport system / permease component LC20_04667 PF02653 Branched-chain amino acid transport system / permease component LC20_04668 PF13407 Periplasmic binding protein domain LC20_04669 PF01791 DeoC/LacD family aldolase LC20_04670 PF03992 Antibiotic biosynthesis monooxygenase LC20_04671 PF08349 Protein of unknown function (DUF1722) LC20_04673 PF10696 Protein of unknown function (DUF2501) LC20_04676 PF00583 Acetyltransferase (GNAT) family LC20_04678 PF03739 Lipopolysaccharide export system permease LptF/LptG LC20_04679 PF03739 Lipopolysaccharide export system permease LptF/LptG LC20_04680 PF02789 Cytosol aminopeptidase family, N-terminal domain LC20_04680 PF00883 Cytosol aminopeptidase family, catalytic domain LC20_04681 PF04364 DNA polymerase III chi subunit, HolC LC20_04682 PF10458 Valyl tRNA synthetase tRNA binding arm LC20_04682 PF08264 Anticodon-binding domain of tRNA LC20_04682 PF00133 tRNA synthetases class I (I, L, M and V) LC20_04683 PF00583 Acetyltransferase (GNAT) family LC20_04685 PF06877 Regulator of ribonuclease activity B LC20_04686 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LC20_04686 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LC20_04687 PF04074 YhcH/YjgK/YiaL LC20_04688 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_04689 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04691 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_04691 PF00005 ABC transporter LC20_04692 PF00005 ABC transporter LC20_04692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LC20_04694 PF02525 Flavodoxin-like fold LC20_04695 PF03466 LysR substrate binding domain LC20_04695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_04696 PF03477 ATP cone domain LC20_04696 PF13597 Anaerobic ribonucleoside-triphosphate reductase LC20_04701 PF00392 Bacterial regulatory proteins, gntR family LC20_04701 PF07702 UTRA domain LC20_04702 PF06754 Phosphonate metabolism protein PhnG LC20_04703 PF05845 Bacterial phosphonate metabolism protein (PhnH) LC20_04704 PF05861 Bacterial phosphonate metabolism protein (PhnI) LC20_04705 PF06007 Phosphonate metabolism protein PhnJ LC20_04706 PF00005 ABC transporter LC20_04707 PF00005 ABC transporter LC20_04708 PF07969 Amidohydrolase family LC20_04710 PF12706 Beta-lactamase superfamily domain LC20_04711 PF13460 NAD(P)H-binding LC20_04714 PF03459 TOBE domain LC20_04714 PF00005 ABC transporter LC20_04714 PF17912 MalK OB fold domain LC20_04715 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04717 PF13416 Bacterial extracellular solute-binding protein LC20_04719 PF05426 Alginate lyase LC20_04719 PF07940 Heparinase II/III-like protein LC20_04721 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LC20_04721 PF01276 Orn/Lys/Arg decarboxylase, major domain LC20_04721 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LC20_04722 PF13520 Amino acid permease LC20_04723 PF01541 GIY-YIG catalytic domain LC20_04724 PF13508 Acetyltransferase (GNAT) domain LC20_04731 PF00296 Luciferase-like monooxygenase LC20_04732 PF12343 Cold shock protein DEAD box A LC20_04732 PF00270 DEAD/DEAH box helicase LC20_04732 PF03880 DbpA RNA binding domain LC20_04732 PF00271 Helicase conserved C-terminal domain LC20_04733 PF07719 Tetratricopeptide repeat LC20_04733 PF13181 Tetratricopeptide repeat LC20_04734 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LC20_04734 PF00013 KH domain LC20_04734 PF01138 3' exoribonuclease family, domain 1 LC20_04734 PF00575 S1 RNA binding domain LC20_04734 PF03725 3' exoribonuclease family, domain 2 LC20_04735 PF00312 Ribosomal protein S15 LC20_04736 PF01509 TruB family pseudouridylate synthase (N terminal domain) LC20_04736 PF09157 Pseudouridine synthase II TruB, C-terminal LC20_04736 PF16198 tRNA pseudouridylate synthase B C-terminal domain LC20_04737 PF02033 Ribosome-binding factor A LC20_04738 PF08364 Bacterial translation initiation factor IF-2 associated region LC20_04738 PF00009 Elongation factor Tu GTP binding domain LC20_04738 PF11987 Translation-initiation factor 2 LC20_04738 PF04760 Translation initiation factor IF-2, N-terminal region LC20_04738 PF03144 Elongation factor Tu domain 2 LC20_04739 PF00575 S1 RNA binding domain LC20_04739 PF08529 NusA N-terminal domain LC20_04739 PF13184 NusA-like KH domain LC20_04740 PF02576 RimP N-terminal domain LC20_04740 PF17384 RimP C-terminal SH3 domain LC20_04742 PF03840 Preprotein translocase SecG subunit LC20_04743 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LC20_04743 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LC20_04743 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LC20_04743 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LC20_04744 PF00809 Pterin binding enzyme LC20_04747 PF01728 FtsJ-like methyltransferase LC20_04748 PF01985 CRS1 / YhbY (CRM) domain LC20_04749 PF01272 Transcription elongation factor, GreA/GreB, C-term LC20_04749 PF03449 Transcription elongation factor, N-terminal LC20_04750 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LC20_04751 PF00486 Transcriptional regulatory protein, C terminal LC20_04751 PF00072 Response regulator receiver domain LC20_04752 PF00512 His Kinase A (phospho-acceptor) domain LC20_04752 PF00672 HAMP domain LC20_04752 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_04753 PF01926 50S ribosome-binding GTPase LC20_04753 PF01018 GTP1/OBG LC20_04754 PF00892 EamA-like transporter family LC20_04755 PF01016 Ribosomal L27 protein LC20_04756 PF00829 Ribosomal prokaryotic L21 protein LC20_04757 PF00348 Polyprenyl synthetase LC20_04759 PF13693 Winged helix-turn-helix DNA-binding LC20_04762 PF02863 Arginine repressor, C-terminal domain LC20_04762 PF01316 Arginine repressor, DNA binding domain LC20_04764 PF01225 Mur ligase family, catalytic domain LC20_04764 PF02875 Mur ligase family, glutamate ligase domain LC20_04764 PF08245 Mur ligase middle domain LC20_04765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LC20_04766 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_04766 PF00672 HAMP domain LC20_04766 PF02203 Tar ligand binding domain homologue LC20_04768 PF00719 Inorganic pyrophosphatase LC20_04769 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LC20_04770 PF04357 TamB, inner membrane protein subunit of TAM complex LC20_04771 PF01103 Surface antigen LC20_04771 PF07244 Surface antigen variable number repeat LC20_04771 PF17243 POTRA domain TamA domain 1 LC20_04772 PF01625 Peptide methionine sulfoxide reductase LC20_04773 PF00571 CBS domain LC20_04773 PF01595 Cyclin M transmembrane N-terminal domain LC20_04773 PF03471 Transporter associated domain LC20_04774 PF06526 Protein of unknown function (DUF1107) LC20_04775 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LC20_04776 PF00459 Inositol monophosphatase family LC20_04778 PF00149 Calcineurin-like phosphoesterase LC20_04778 PF02872 5'-nucleotidase, C-terminal domain LC20_04779 PF01814 Hemerythrin HHE cation binding domain LC20_04779 PF04405 Domain of Unknown function (DUF542) LC20_04780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LC20_04780 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LC20_04781 PF04225 Opacity-associated protein A LysM-like domain LC20_04781 PF08525 Opacity-associated protein A N-terminal motif LC20_04783 PF03948 Ribosomal protein L9, C-terminal domain LC20_04783 PF01281 Ribosomal protein L9, N-terminal domain LC20_04784 PF01084 Ribosomal protein S18 LC20_04786 PF01250 Ribosomal protein S6 LC20_04788 PF00326 Prolyl oligopeptidase family LC20_04790 PF07338 Protein of unknown function (DUF1471) LC20_04791 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LC20_04791 PF02770 Acyl-CoA dehydrogenase, middle domain LC20_04791 PF18158 Adaptive response protein AidB N-terminal domain LC20_04792 PF00588 SpoU rRNA Methylase family LC20_04792 PF08032 RNA 2'-O ribose methyltransferase substrate binding LC20_04793 PF08206 Ribonuclease B OB domain LC20_04793 PF00773 RNB domain LC20_04793 PF08461 Ribonuclease R winged-helix domain LC20_04793 PF00575 S1 RNA binding domain LC20_04793 PF17876 Cold shock domain LC20_04794 PF02082 Transcriptional regulator LC20_04795 PF00709 Adenylosuccinate synthetase LC20_04796 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LC20_04800 PF01145 SPFH domain / Band 7 family LC20_04801 PF12221 Bacterial membrane protein N terminal LC20_04801 PF01145 SPFH domain / Band 7 family LC20_04802 PF16360 GTP-binding GTPase Middle Region LC20_04802 PF13167 GTP-binding GTPase N-terminal LC20_04802 PF01926 50S ribosome-binding GTPase LC20_04803 PF17209 Hfq protein LC20_04805 PF01119 DNA mismatch repair protein, C-terminal domain LC20_04805 PF08676 MutL C terminal dimerisation domain LC20_04806 PF01520 N-acetylmuramoyl-L-alanine amidase LC20_04807 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LC20_04808 PF03853 YjeF-related protein N-terminus LC20_04808 PF01256 Carbohydrate kinase LC20_04809 PF08331 Domain of unknown function (DUF1730) LC20_04813 PF00929 Exonuclease LC20_04814 PF03193 RsgA GTPase LC20_04815 PF02666 Phosphatidylserine decarboxylase LC20_04816 PF00924 Mechanosensitive ion channel LC20_04816 PF12795 Mechanosensitive ion channel porin domain LC20_04816 PF12794 Mechanosensitive ion channel inner membrane domain 1 LC20_04817 PF00152 tRNA synthetases class II (D, K and N) LC20_04819 PF02910 Fumarate reductase flavoprotein C-term LC20_04819 PF00890 FAD binding domain LC20_04820 PF13085 2Fe-2S iron-sulfur cluster binding domain LC20_04820 PF13183 4Fe-4S dicluster domain LC20_04821 PF02300 Fumarate reductase subunit C LC20_04822 PF02313 Fumarate reductase subunit D LC20_04824 PF08212 Lipocalin-like domain LC20_04825 PF00893 Small Multidrug Resistance protein LC20_04826 PF09285 Elongation factor P, C-terminal LC20_04826 PF08207 Elongation factor P (EF-P) KOW-like domain LC20_04826 PF01132 Elongation factor P (EF-P) OB domain LC20_04827 PF04055 Radical SAM superfamily LC20_04828 PF13698 Domain of unknown function (DUF4156) LC20_04829 PF00118 TCP-1/cpn60 chaperonin family LC20_04830 PF00166 Chaperonin 10 Kd subunit LC20_04832 PF04186 FxsA cytoplasmic membrane protein LC20_04834 PF10415 Fumarase C C-terminus LC20_04834 PF00206 Lyase LC20_04835 PF03605 Anaerobic c4-dicarboxylate membrane transporter LC20_04836 PF03091 CutA1 divalent ion tolerance protein LC20_04837 PF11412 Disulphide bond corrector protein DsbC LC20_04837 PF02683 Cytochrome C biogenesis protein transmembrane region LC20_04838 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LC20_04838 PF00384 Molybdopterin oxidoreductase LC20_04838 PF01568 Molydopterin dinucleotide binding domain LC20_04844 PF05651 Putative sugar diacid recognition LC20_04844 PF17853 GGDEF-like domain LC20_04844 PF13556 PucR C-terminal helix-turn-helix domain LC20_04846 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LC20_04846 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LC20_04847 PF03328 HpcH/HpaI aldolase/citrate lyase family LC20_04852 PF04055 Radical SAM superfamily LC20_04856 PF10636 Hemin uptake protein hemP LC20_04857 PF07715 TonB-dependent Receptor Plug Domain LC20_04857 PF00593 TonB dependent receptor LC20_04858 PF05171 Haemin-degrading HemS.ChuX domain LC20_04859 PF01497 Periplasmic binding protein LC20_04860 PF01032 FecCD transport family LC20_04861 PF00005 ABC transporter LC20_04862 PF00392 Bacterial regulatory proteins, gntR family LC20_04862 PF00155 Aminotransferase class I and II LC20_04864 PF00581 Rhodanese-like domain LC20_04864 PF00899 ThiF family LC20_04880 PF07715 TonB-dependent Receptor Plug Domain LC20_04880 PF00593 TonB dependent receptor LC20_04882 PF12794 Mechanosensitive ion channel inner membrane domain 1 LC20_04882 PF00924 Mechanosensitive ion channel LC20_04882 PF12795 Mechanosensitive ion channel porin domain LC20_04883 PF01206 Sulfurtransferase TusA LC20_04884 PF04143 Sulphur transport LC20_04886 PF01312 FlhB HrpN YscU SpaS Family LC20_04887 PF01311 Bacterial export proteins, family 1 LC20_04888 PF01313 Bacterial export proteins, family 3 LC20_04889 PF00813 FliP family LC20_04890 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LC20_04893 PF18269 T3SS EscN ATPase C-terminal domain LC20_04893 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_04897 PF07201 HrpJ-like domain LC20_04900 PF01514 Secretory protein of YscJ/FliF family LC20_04904 PF14525 AraC-binding-like domain LC20_04904 PF12833 Helix-turn-helix domain LC20_04908 PF05802 Enterobacterial EspB protein LC20_04912 PF03433 EspA-like secreted protein LC20_04918 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LC20_04918 PF00072 Response regulator receiver domain LC20_04918 PF01627 Hpt domain LC20_04918 PF00512 His Kinase A (phospho-acceptor) domain LC20_04918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_04918 PF00672 HAMP domain LC20_04919 PF00072 Response regulator receiver domain LC20_04919 PF00196 Bacterial regulatory proteins, luxR family LC20_04920 PF00375 Sodium:dicarboxylate symporter family LC20_04921 PF13193 AMP-binding enzyme C-terminal domain LC20_04921 PF16177 Acetyl-coenzyme A synthetase N-terminus LC20_04921 PF00501 AMP-binding enzyme LC20_04922 PF04341 Protein of unknown function, DUF485 LC20_04923 PF00474 Sodium:solute symporter family LC20_04926 PF01808 AICARFT/IMPCHase bienzyme LC20_04926 PF02142 MGS-like domain LC20_04927 PF02844 Phosphoribosylglycinamide synthetase, N domain LC20_04927 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LC20_04927 PF02843 Phosphoribosylglycinamide synthetase, C domain LC20_04928 PF07356 Protein of unknown function (DUF1481) LC20_04929 PF00216 Bacterial DNA-binding protein LC20_04930 PF04222 Protein of unknown function (DUF416) LC20_04931 PF04493 Endonuclease V LC20_04932 PF01208 Uroporphyrinogen decarboxylase (URO-D) LC20_04933 PF09297 NADH pyrophosphatase zinc ribbon domain LC20_04933 PF00293 NUDIX domain LC20_04934 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LC20_04935 PF01964 Radical SAM ThiC family LC20_04935 PF13667 ThiC-associated domain LC20_04936 PF02581 Thiamine monophosphate synthase LC20_04937 PF00899 ThiF family LC20_04938 PF02597 ThiS family LC20_04939 PF05690 Thiazole biosynthesis protein ThiG LC20_04940 PF06968 Biotin and Thiamin Synthesis associated domain LC20_04940 PF04055 Radical SAM superfamily LC20_04941 PF04998 RNA polymerase Rpb1, domain 5 LC20_04941 PF04997 RNA polymerase Rpb1, domain 1 LC20_04941 PF00623 RNA polymerase Rpb1, domain 2 LC20_04941 PF04983 RNA polymerase Rpb1, domain 3 LC20_04941 PF05000 RNA polymerase Rpb1, domain 4 LC20_04942 PF04560 RNA polymerase Rpb2, domain 7 LC20_04942 PF00562 RNA polymerase Rpb2, domain 6 LC20_04942 PF10385 RNA polymerase beta subunit external 1 domain LC20_04942 PF04565 RNA polymerase Rpb2, domain 3 LC20_04942 PF04561 RNA polymerase Rpb2, domain 2 LC20_04942 PF04563 RNA polymerase beta subunit LC20_04943 PF16320 Ribosomal protein L7/L12 dimerisation domain LC20_04943 PF00542 Ribosomal protein L7/L12 C-terminal domain LC20_04944 PF00466 Ribosomal protein L10 LC20_04946 PF00687 Ribosomal protein L1p/L10e family LC20_04947 PF03946 Ribosomal protein L11, N-terminal domain LC20_04947 PF00298 Ribosomal protein L11, RNA binding domain LC20_04948 PF00467 KOW motif LC20_04948 PF02357 Transcription termination factor nusG LC20_04949 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LC20_04954 PF13673 Acetyltransferase (GNAT) domain LC20_04955 PF00485 Phosphoribulokinase / Uridine kinase family LC20_04956 PF03099 Biotin/lipoate A/B protein ligase family LC20_04956 PF08279 HTH domain LC20_04956 PF02237 Biotin protein ligase C terminal domain LC20_04957 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LC20_04957 PF01565 FAD binding domain LC20_04959 PF12724 Flavodoxin domain LC20_04960 PF02386 Cation transport protein LC20_04961 PF01205 Uncharacterized protein family UPF0029 LC20_04961 PF09186 Domain of unknown function (DUF1949) LC20_04962 PF00557 Metallopeptidase family M24 LC20_04964 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LC20_04964 PF00378 Enoyl-CoA hydratase/isomerase LC20_04964 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LC20_04965 PF00108 Thiolase, N-terminal domain LC20_04965 PF02803 Thiolase, C-terminal domain LC20_04966 PF00970 Oxidoreductase FAD-binding domain LC20_04966 PF00175 Oxidoreductase NAD-binding domain LC20_04967 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LC20_04968 PF02357 Transcription termination factor nusG LC20_04969 PF00490 Delta-aminolevulinic acid dehydratase LC20_04970 PF01026 TatD related DNase LC20_04976 PF02416 mttA/Hcf106 family LC20_04977 PF03109 ABC1 family LC20_04978 PF02036 SCP-2 sterol transfer family LC20_04979 PF01209 ubiE/COQ5 methyltransferase family LC20_04980 PF02646 RmuC family LC20_04981 PF09335 SNARE associated Golgi protein LC20_04982 PF02554 Carbon starvation protein CstA LC20_04982 PF13722 5TM C-terminal transporter carbon starvation CstA LC20_04985 PF01048 Phosphorylase superfamily LC20_04986 PF01738 Dienelactone hydrolase family LC20_04987 PF01717 Cobalamin-independent synthase, Catalytic domain LC20_04987 PF08267 Cobalamin-independent synthase, N-terminal domain LC20_04988 PF00892 EamA-like transporter family LC20_04989 PF03547 Membrane transport protein LC20_04990 PF03009 Glycerophosphoryl diester phosphodiesterase family LC20_04991 PF00005 ABC transporter LC20_04991 PF17912 MalK OB fold domain LC20_04992 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04993 PF00528 Binding-protein-dependent transport system inner membrane component LC20_04994 PF13416 Bacterial extracellular solute-binding protein LC20_05005 PF00005 ABC transporter LC20_05006 PF12399 Branched-chain amino acid ATP-binding cassette transporter LC20_05006 PF00005 ABC transporter LC20_05007 PF11862 Domain of unknown function (DUF3382) LC20_05007 PF02653 Branched-chain amino acid transport system / permease component LC20_05008 PF02653 Branched-chain amino acid transport system / permease component LC20_05009 PF13458 Periplasmic binding protein LC20_05011 PF12568 Acetyltransferase (GNAT) domain, PanZ LC20_05012 PF00140 Sigma-70 factor, region 1.2 LC20_05012 PF04545 Sigma-70, region 4 LC20_05012 PF04542 Sigma-70 region 2 LC20_05013 PF02687 FtsX-like permease family LC20_05013 PF18075 FtsX extracellular domain LC20_05014 PF00005 ABC transporter LC20_05015 PF00448 SRP54-type protein, GTPase domain LC20_05015 PF02881 SRP54-type protein, helical bundle domain LC20_05017 PF06611 Protein of unknown function (DUF1145) LC20_05020 PF07947 YhhN family LC20_05021 PF00403 Heavy-metal-associated domain LC20_05022 PF01206 Sulfurtransferase TusA LC20_05024 PF02592 Putative vitamin uptake transporter LC20_05025 PF08786 DcrB LC20_05026 PF02754 Cysteine-rich domain LC20_05026 PF13183 4Fe-4S dicluster domain LC20_05027 PF00890 FAD binding domain LC20_05028 PF04324 BFD-like [2Fe-2S] binding domain LC20_05028 PF01266 FAD dependent oxidoreductase LC20_05030 PF07690 Major Facilitator Superfamily LC20_05031 PF03009 Glycerophosphoryl diester phosphodiesterase family LC20_05034 PF12146 Serine aminopeptidase, S33 LC20_05035 PF01810 LysE type translocator LC20_05036 PF01810 LysE type translocator LC20_05037 PF00271 Helicase conserved C-terminal domain LC20_05037 PF00570 HRDC domain LC20_05037 PF00270 DEAD/DEAH box helicase LC20_05037 PF16124 RecQ zinc-binding LC20_05037 PF09382 RQC domain LC20_05038 PF02253 Phospholipase A1 LC20_05039 PF03061 Thioesterase superfamily LC20_05040 PF00892 EamA-like transporter family LC20_05041 PF01544 CorA-like Mg2+ transporter protein LC20_05043 PF09370 Phosphoenolpyruvate hydrolase-like LC20_05047 PF00580 UvrD/REP helicase N-terminal domain LC20_05047 PF13361 UvrD-like helicase C-terminal domain LC20_05048 PF13419 Haloacid dehalogenase-like hydrolase LC20_05049 PF00589 Phage integrase family LC20_05049 PF02899 Phage integrase, N-terminal SAM-like domain LC20_05050 PF04340 Protein of unknown function, DUF484 LC20_05051 PF01678 Diaminopimelate epimerase LC20_05052 PF13627 Prokaryotic lipoprotein-attachment site LC20_05053 PF01491 Frataxin-like domain LC20_05054 PF01295 Adenylate cyclase, class-I LC20_05054 PF12633 Adenylate cyclase NT domain LC20_05055 PF03900 Porphobilinogen deaminase, C-terminal domain LC20_05055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LC20_05056 PF02602 Uroporphyrinogen-III synthase HemD LC20_05057 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LC20_05058 PF07219 HemY protein N-terminus LC20_05058 PF07719 Tetratricopeptide repeat LC20_05061 PF00324 Amino acid permease LC20_05062 PF03808 Glycosyl transferase WecB/TagA/CpsF family LC20_05063 PF06899 WzyE protein, O-antigen assembly polymerase LC20_05064 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 LC20_05065 PF01943 Polysaccharide biosynthesis protein LC20_05066 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LC20_05068 PF00483 Nucleotidyl transferase LC20_05070 PF16363 GDP-mannose 4,6 dehydratase LC20_05071 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LC20_05071 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LC20_05071 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LC20_05072 PF02350 UDP-N-acetylglucosamine 2-epimerase LC20_05073 PF02706 Chain length determinant protein LC20_05074 PF00953 Glycosyl transferase family 4 LC20_05076 PF07497 Rho termination factor, RNA-binding domain LC20_05076 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_05076 PF07498 Rho termination factor, N-terminal domain LC20_05077 PF00085 Thioredoxin LC20_05078 PF00270 DEAD/DEAH box helicase LC20_05078 PF00271 Helicase conserved C-terminal domain LC20_05079 PF02541 Ppx/GppA phosphatase family LC20_05082 PF00580 UvrD/REP helicase N-terminal domain LC20_05082 PF13361 UvrD-like helicase C-terminal domain LC20_05087 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LC20_05087 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LC20_05089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_05089 PF03466 LysR substrate binding domain LC20_05090 PF00291 Pyridoxal-phosphate dependent enzyme LC20_05090 PF00585 C-terminal regulatory domain of Threonine dehydratase LC20_05091 PF00920 Dehydratase family LC20_05092 PF01063 Amino-transferase class IV LC20_05094 PF00205 Thiamine pyrophosphate enzyme, central domain LC20_05094 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_05094 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_05098 PF02086 D12 class N6 adenine-specific DNA methyltransferase LC20_05099 PF02384 N-6 DNA Methylase LC20_05099 PF12950 TaqI-like C-terminal specificity domain LC20_05105 PF04219 Protein of unknown function, DUF LC20_05108 PF02653 Branched-chain amino acid transport system / permease component LC20_05109 PF02653 Branched-chain amino acid transport system / permease component LC20_05110 PF00005 ABC transporter LC20_05111 PF13407 Periplasmic binding protein domain LC20_05112 PF01177 Asp/Glu/Hydantoin racemase LC20_05113 PF07715 TonB-dependent Receptor Plug Domain LC20_05113 PF00593 TonB dependent receptor LC20_05114 PF05958 tRNA (Uracil-5-)-methyltransferase LC20_05115 PF07226 Protein of unknown function (DUF1422) LC20_05116 PF00440 Bacterial regulatory proteins, tetR family LC20_05117 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LC20_05117 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_05118 PF03466 LysR substrate binding domain LC20_05118 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_05120 PF00462 Glutaredoxin LC20_05120 PF08534 Redoxin LC20_05121 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LC20_05121 PF07992 Pyridine nucleotide-disulphide oxidoreductase LC20_05123 PF00529 HlyD membrane-fusion protein of T1SS LC20_05124 PF00664 ABC transporter transmembrane region LC20_05124 PF00005 ABC transporter LC20_05131 PF07715 TonB-dependent Receptor Plug Domain LC20_05131 PF00593 TonB dependent receptor LC20_05132 PF14698 Argininosuccinate lyase C-terminal LC20_05132 PF00206 Lyase LC20_05133 PF00696 Amino acid kinase family LC20_05134 PF02774 Semialdehyde dehydrogenase, dimerisation domain LC20_05134 PF01118 Semialdehyde dehydrogenase, NAD binding domain LC20_05135 PF01546 Peptidase family M20/M25/M40 LC20_05135 PF07687 Peptidase dimerisation domain LC20_05138 PF00311 Phosphoenolpyruvate carboxylase LC20_05140 PF02219 Methylenetetrahydrofolate reductase LC20_05141 PF03447 Homoserine dehydrogenase, NAD binding domain LC20_05141 PF00742 Homoserine dehydrogenase LC20_05141 PF00696 Amino acid kinase family LC20_05142 PF01053 Cys/Met metabolism PLP-dependent enzyme LC20_05144 PF01340 Met Apo-repressor, MetJ LC20_05145 PF01197 Ribosomal protein L31 LC20_05147 PF00271 Helicase conserved C-terminal domain LC20_05147 PF17764 3′ DNA-binding domain (3′BD) LC20_05147 PF18074 Primosomal protein N C-terminal domain LC20_05147 PF00270 DEAD/DEAH box helicase LC20_05147 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LC20_05148 PF00356 Bacterial regulatory proteins, lacI family LC20_05149 PF05036 Sporulation related domain LC20_05150 PF00227 Proteasome subunit LC20_05151 PF00004 ATPase family associated with various cellular activities (AAA) LC20_05151 PF07724 AAA domain (Cdc48 subfamily) LC20_05151 PF10431 C-terminal, D2-small domain, of ClpB protein LC20_05152 PF01040 UbiA prenyltransferase family LC20_05153 PF03737 Aldolase/RraA LC20_05154 PF06005 Cell division protein ZapB LC20_05155 PF00230 Major intrinsic protein LC20_05156 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_05156 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_05157 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LC20_05158 PF07690 Major Facilitator Superfamily LC20_05160 PF00970 Oxidoreductase FAD-binding domain LC20_05160 PF00175 Oxidoreductase NAD-binding domain LC20_05161 PF05656 Protein of unknown function (DUF805) LC20_05162 PF07305 Protein of unknown function (DUF1454) LC20_05163 PF00121 Triosephosphate isomerase LC20_05166 PF00365 Phosphofructokinase LC20_05167 PF16916 Dimerisation domain of Zinc Transporter LC20_05167 PF01545 Cation efflux family LC20_05168 PF07813 LTXXQ motif family protein LC20_05169 PF00072 Response regulator receiver domain LC20_05169 PF00486 Transcriptional regulatory protein, C terminal LC20_05170 PF00512 His Kinase A (phospho-acceptor) domain LC20_05170 PF16527 Two-component sensor protein CpxA, periplasmic domain LC20_05170 PF00672 HAMP domain LC20_05170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_05171 PF12833 Helix-turn-helix domain LC20_05171 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LC20_05171 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LC20_05171 PF02805 Metal binding domain of Ada LC20_05172 PF00588 SpoU rRNA Methylase family LC20_05173 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_05173 PF06426 Serine acetyltransferase, N-terminal LC20_05174 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LC20_05174 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LC20_05175 PF02556 Preprotein translocase subunit SecB LC20_05176 PF00462 Glutaredoxin LC20_05177 PF00581 Rhodanese-like domain LC20_05178 PF01676 Metalloenzyme superfamily LC20_05178 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LC20_05179 PF01551 Peptidase family M23 LC20_05180 PF04748 Divergent polysaccharide deacetylase LC20_05181 PF08240 Alcohol dehydrogenase GroES-like domain LC20_05181 PF00107 Zinc-binding dehydrogenase LC20_05182 PF00155 Aminotransferase class I and II LC20_05183 PF01370 NAD dependent epimerase/dehydratase family LC20_05184 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LC20_05185 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LC20_05187 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LC20_05188 PF00535 Glycosyl transferase family 2 LC20_05189 PF01467 Cytidylyltransferase-like LC20_05191 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LC20_05191 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LC20_05191 PF06827 Zinc finger found in FPG and IleRS LC20_05192 PF00830 Ribosomal L28 family LC20_05193 PF04002 RadC-like JAB domain LC20_05194 PF02441 Flavoprotein LC20_05194 PF04127 DNA / pantothenate metabolism flavoprotein LC20_05195 PF00692 dUTPase LC20_05196 PF00440 Bacterial regulatory proteins, tetR family LC20_05197 PF00156 Phosphoribosyl transferase domain LC20_05198 PF01138 3' exoribonuclease family, domain 1 LC20_05198 PF03725 3' exoribonuclease family, domain 2 LC20_05199 PF08340 Domain of unknown function (DUF1732) LC20_05199 PF03755 YicC-like family, N-terminal region LC20_05205 PF17345 Family of unknown function (DUF5375) LC20_05219 PF01773 Na+ dependent nucleoside transporter N-terminus LC20_05219 PF07670 Nucleoside recognition LC20_05219 PF07662 Na+ dependent nucleoside transporter C-terminus LC20_05221 PF03458 UPF0126 domain LC20_05222 PF01653 NAD-dependent DNA ligase adenylation domain LC20_05222 PF03120 NAD-dependent DNA ligase OB-fold domain LC20_05224 PF00625 Guanylate kinase LC20_05225 PF01192 RNA polymerase Rpb6 LC20_05226 PF02824 TGS domain LC20_05226 PF13291 ACT domain LC20_05226 PF04607 Region found in RelA / SpoT proteins LC20_05227 PF00588 SpoU rRNA Methylase family LC20_05227 PF12105 SpoU, rRNA methylase, C-terminal LC20_05228 PF17191 RecG wedge domain LC20_05228 PF00271 Helicase conserved C-terminal domain LC20_05228 PF00270 DEAD/DEAH box helicase LC20_05231 PF00860 Permease family LC20_05232 PF05170 AsmA family LC20_05235 PF13693 Winged helix-turn-helix DNA-binding LC20_05237 PF09500 Putative thioesterase (yiiD_Cterm) LC20_05237 PF00583 Acetyltransferase (GNAT) family LC20_05238 PF02580 D-Tyr-tRNA(Tyr) deacylase LC20_05239 PF03631 Virulence factor BrkB LC20_05240 PF13419 Haloacid dehalogenase-like hydrolase LC20_05243 PF03951 Glutamine synthetase, beta-Grasp domain LC20_05243 PF00120 Glutamine synthetase, catalytic domain LC20_05244 PF00989 PAS fold LC20_05244 PF00512 His Kinase A (phospho-acceptor) domain LC20_05244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_05245 PF02954 Bacterial regulatory protein, Fis family LC20_05245 PF00072 Response regulator receiver domain LC20_05245 PF00158 Sigma-54 interaction domain LC20_05246 PF06969 HemN C-terminal domain LC20_05246 PF04055 Radical SAM superfamily LC20_05247 PF04220 Der GTPase activator (YihI) LC20_05248 PF01926 50S ribosome-binding GTPase LC20_05250 PF01612 3'-5' exonuclease LC20_05250 PF00476 DNA polymerase family A LC20_05250 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LC20_05250 PF01367 5'-3' exonuclease, C-terminal SAM fold LC20_05251 PF01323 DSBA-like thioredoxin domain LC20_05252 PF01636 Phosphotransferase enzyme family LC20_05254 PF12804 MobA-like NTP transferase domain LC20_05255 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LC20_05256 PF00392 Bacterial regulatory proteins, gntR family LC20_05256 PF07729 FCD domain LC20_05258 PF07690 Major Facilitator Superfamily LC20_05259 PF00356 Bacterial regulatory proteins, lacI family LC20_05260 PF00294 pfkB family carbohydrate kinase LC20_05261 PF13407 Periplasmic binding protein domain LC20_05263 PF00005 ABC transporter LC20_05264 PF05025 RbsD / FucU transport protein family LC20_05274 PF04986 Putative transposase LC20_05274 PF14319 Transposase zinc-binding domain LC20_05277 PF01037 Lrp/AsnC ligand binding domain LC20_05278 PF00258 Flavodoxin LC20_05279 PF01134 Glucose inhibited division protein A LC20_05279 PF13932 GidA associated domain LC20_05280 PF02527 rRNA small subunit methyltransferase G LC20_05281 PF03899 ATP synthase I chain LC20_05282 PF00119 ATP synthase A chain LC20_05283 PF00137 ATP synthase subunit C LC20_05284 PF00430 ATP synthase B/B' CF(0) LC20_05285 PF00213 ATP synthase delta (OSCP) subunit LC20_05286 PF00306 ATP synthase alpha/beta chain, C terminal domain LC20_05286 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_05286 PF02874 ATP synthase alpha/beta family, beta-barrel domain LC20_05287 PF00231 ATP synthase LC20_05288 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LC20_05288 PF02874 ATP synthase alpha/beta family, beta-barrel domain LC20_05289 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LC20_05289 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LC20_05291 PF12804 MobA-like NTP transferase domain LC20_05291 PF00132 Bacterial transferase hexapeptide (six repeats) LC20_05292 PF01380 SIS domain LC20_05295 PF12849 PBP superfamily domain LC20_05296 PF00528 Binding-protein-dependent transport system inner membrane component LC20_05297 PF00528 Binding-protein-dependent transport system inner membrane component LC20_05300 PF01895 PhoU domain LC20_05302 PF00497 Bacterial extracellular solute-binding proteins, family 3 LC20_05303 PF00528 Binding-protein-dependent transport system inner membrane component LC20_05304 PF00528 Binding-protein-dependent transport system inner membrane component LC20_05305 PF13419 Haloacid dehalogenase-like hydrolase LC20_05307 PF00860 Permease family LC20_05309 PF00072 Response regulator receiver domain LC20_05309 PF00196 Bacterial regulatory proteins, luxR family LC20_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LC20_05310 PF00512 His Kinase A (phospho-acceptor) domain LC20_05311 PF03358 NADPH-dependent FMN reductase LC20_05312 PF02203 Tar ligand binding domain homologue LC20_05312 PF00672 HAMP domain LC20_05312 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LC20_05313 PF00528 Binding-protein-dependent transport system inner membrane component LC20_05314 PF00005 ABC transporter LC20_05314 PF09383 NIL domain LC20_05316 PF07055 Enoyl reductase FAD binding domain LC20_05316 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LC20_05316 PF12241 Trans-2-enoyl-CoA reductase catalytic region LC20_05317 PF10396 GTP-binding protein TrmE N-terminus LC20_05317 PF12631 MnmE helical domain LC20_05317 PF01926 50S ribosome-binding GTPase LC20_05318 PF02096 60Kd inner membrane protein LC20_05318 PF14849 YidC periplasmic domain LC20_05319 PF01809 Putative membrane protein insertion efficiency factor LC20_05322 PF00468 Ribosomal protein L34 LC20_06002 PF00589 Phage integrase family LC20_06014 PF01381 Helix-turn-helix LC20_06015 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LC20_06021 PF14319 Transposase zinc-binding domain LC20_06021 PF04986 Putative transposase LC20_06029 PF04986 Putative transposase LC20_06029 PF14319 Transposase zinc-binding domain LC20_06032 PF04986 Putative transposase LC20_06032 PF14319 Transposase zinc-binding domain LC20_06034 PF02387 IncFII RepA protein family LC20_06036 PF10723 Replication regulatory protein RepB LC20_06039 PF05857 TraX protein LC20_06052 PF07916 TraG-like protein, N-terminal region LC20_06053 PF06122 Conjugative relaxosome accessory transposon protein LC20_06054 PF13728 F plasmid transfer operon protein LC20_06060 PF09673 Type-F conjugative transfer system pilin assembly protein LC20_06062 PF06834 TraU protein LC20_06063 PF12477 Sex factor F TraW protein N terminal LC20_06065 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LC20_06071 PF03743 Bacterial conjugation TrbI-like protein LC20_06073 PF05309 TraE protein LC20_06074 PF07178 TraL protein LC20_06075 PF05513 TraA LC20_06077 PF05509 TraY domain LC20_06082 PF05261 TraM protein, DNA-binding LC20_06083 PF01464 Transglycosylase SLT domain LC20_06084 PF06067 Domain of unknown function (DUF932) LC20_06085 PF01348 Type II intron maturase LC20_06085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LC20_06096 PF06952 PsiA protein LC20_06098 PF02195 ParB-like nuclease domain LC20_06099 PF00436 Single-strand binding protein family LC20_06102 PF03230 Antirestriction protein LC20_06109 PF02195 ParB-like nuclease domain LC20_06109 PF08775 ParB family LC20_06110 PF18607 ParA helix turn helix domain LC20_06110 PF13614 AAA domain LC20_06111 PF02796 Helix-turn-helix domain of resolvase LC20_06111 PF00239 Resolvase, N terminal domain LC20_06117 PF14319 Transposase zinc-binding domain LC20_06117 PF04986 Putative transposase LC20_06202 PF07979 Intimin C-type lectin domain LC20_06202 PF09134 Invasin, domain 3 LC20_06202 PF11924 Inverse autotransporter, beta-domain LC20_06202 PF02369 Bacterial Ig-like domain (group 1) LC20_06203 PF13610 DDE domain LC20_06210 PF04986 Putative transposase LC20_06210 PF14319 Transposase zinc-binding domain LC20_06219 PF02387 IncFII RepA protein family LC20_06224 PF13614 AAA domain LC20_06227 PF14319 Transposase zinc-binding domain LC20_06227 PF04986 Putative transposase LC20_06229 PF14319 Transposase zinc-binding domain LC20_06229 PF04986 Putative transposase LC20_06231 PF00239 Resolvase, N terminal domain LC20_06231 PF02796 Helix-turn-helix domain of resolvase LC20_06232 PF04754 Putative transposase, YhgA-like LC20_06238 PF00239 Resolvase, N terminal domain LC20_06238 PF02796 Helix-turn-helix domain of resolvase LC20_06239 PF14319 Transposase zinc-binding domain LC20_06239 PF04986 Putative transposase LC20_06242 PF04986 Putative transposase LC20_06242 PF14319 Transposase zinc-binding domain LC20_06246 PF00196 Bacterial regulatory proteins, luxR family LC20_06246 PF03472 Autoinducer binding domain LC20_06247 PF00765 Autoinducer synthase LC20_06250 PF14319 Transposase zinc-binding domain LC20_06250 PF04986 Putative transposase LC20_06253 PF04986 Putative transposase LC20_06253 PF14319 Transposase zinc-binding domain LC20_06257 PF00196 Bacterial regulatory proteins, luxR family LC20_06257 PF03472 Autoinducer binding domain LC20_06258 PF00765 Autoinducer synthase LC20_06264 PF14319 Transposase zinc-binding domain LC20_06264 PF04986 Putative transposase LC20_06305 PF01022 Bacterial regulatory protein, arsR family LC20_06350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LC20_06350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LC20_06350 PF00205 Thiamine pyrophosphate enzyme, central domain LC20_06355 PF18390 Glycogen debranching enzyme C-terminal domain LC20_06355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LC20_06355 PF00128 Alpha amylase, catalytic domain LC20_06370 PF03449 Transcription elongation factor, N-terminal LC20_06370 PF01272 Transcription elongation factor, GreA/GreB, C-term LC20_06385 PF03144 Elongation factor Tu domain 2 LC20_06385 PF03143 Elongation factor Tu C-terminal domain LC20_06385 PF00009 Elongation factor Tu GTP binding domain LC20_06390 PF00203 Ribosomal protein S19 LC20_06395 PF00238 Ribosomal protein L14p/L23e LC20_06400 PF00444 Ribosomal protein L36 LC20_06420 PF12961 Domain of unknown function (DUF3850) LC20_06475 PF00872 Transposase, Mutator family LC20_06490 PF00148 Nitrogenase component 1 type Oxidoreductase LC20_06505 PF17755 UvrA DNA-binding domain LC20_06505 PF17760 UvrA interaction domain LC20_06505 PF00005 ABC transporter LC20_06540 PF00563 EAL domain LC20_06540 PF00990 Diguanylate cyclase, GGDEF domain LC20_06540 PF17157 Gammaproteobacterial periplasmic sensor domain LC20_06545 PF13502 AsmA-like C-terminal region LC20_06545 PF13116 Protein of unknown function LC20_06610 PF13610 DDE domain LC20_06615 PF13610 DDE domain LC20_06620 PF13610 DDE domain LC20_06630 PF01022 Bacterial regulatory protein, arsR family LC20_06640 PF13610 DDE domain LC20_06675 PF05728 Uncharacterised protein family (UPF0227) LC20_06750 PF06932 Protein of unknown function (DUF1283) LC20_06775 PF00263 Bacterial type II and III secretion system protein LC20_06775 PF03958 Bacterial type II/III secretion system short domain LC20_06785 PF03797 Autotransporter beta-domain LC20_06800 PF01494 FAD binding domain LC20_06815 PF00589 Phage integrase family LC20_06840 PF00872 Transposase, Mutator family LC20_06850 PF07963 Prokaryotic N-terminal methylation motif LC20_06850 PF00114 Pilin (bacterial filament) LC20_06860 PF00872 Transposase, Mutator family LC20_06865 PF07963 Prokaryotic N-terminal methylation motif LC20_06865 PF12528 Type II secretion prepilin peptidase dependent protein C LC20_06870 PF00580 UvrD/REP helicase N-terminal domain LC20_06870 PF12705 PD-(D/E)XK nuclease superfamily LC20_06870 PF13361 UvrD-like helicase C-terminal domain LC20_06890 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LC20_06890 PF03641 Possible lysine decarboxylase LC20_06890 PF11892 Domain of unknown function (DUF3412) LC20_06900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LC20_06900 PF14579 Helix-hairpin-helix motif LC20_06900 PF01336 OB-fold nucleic acid binding domain LC20_06900 PF07733 Bacterial DNA polymerase III alpha NTPase domain LC20_06900 PF02811 PHP domain LC20_06905 PF07073 Modulator of Rho-dependent transcription termination (ROF) LC20_06910 PF01980 tRNA-methyltransferase O LC20_06910 PF18389 TrmO C-terminal domain LC20_06960 PF00528 Binding-protein-dependent transport system inner membrane component LC20_06965 PF05860 haemagglutination activity domain LC20_06970 PF03116 NQR2, RnfD, RnfE family LC20_06980 PF04381 Putative exonuclease, RdgC LC20_06985 PF13476 AAA domain LC20_06995 PF07690 Major Facilitator Superfamily LC20_07015 PF01297 Zinc-uptake complex component A periplasmic LC20_07025 PF00535 Glycosyl transferase family 2 LC20_07035 PF04073 Aminoacyl-tRNA editing domain LC20_07055 PF05860 haemagglutination activity domain LC20_07055 PF13332 Hemagglutinin repeat LC20_07055 PF13018 Extended Signal Peptide of Type V secretion system LC20_07055 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain LC20_07055 PF05594 Haemagluttinin repeat LC20_07145 PF01402 Ribbon-helix-helix protein, copG family LC20_07150 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) LC20_07160 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LC20_07215 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LC20_07230 PF00148 Nitrogenase component 1 type Oxidoreductase LC20_07250 PF06183 DinI-like family LC20_07255 PF00202 Aminotransferase class-III LC20_07260 PF01207 Dihydrouridine synthase (Dus) LC20_07270 PF01381 Helix-turn-helix LC20_07285 PF02796 Helix-turn-helix domain of resolvase LC20_07285 PF00239 Resolvase, N terminal domain LC20_07290 PF07508 Recombinase LC20_07290 PF00239 Resolvase, N terminal domain LC20_07290 PF13408 Recombinase zinc beta ribbon domain LC20_07295 PF01844 HNH endonuclease LC20_07305 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LC20_07310 PF00892 EamA-like transporter family LC20_07335 PF00107 Zinc-binding dehydrogenase LC20_07335 PF08240 Alcohol dehydrogenase GroES-like domain LC20_07345 PF08241 Methyltransferase domain LC20_07350 PF13477 Glycosyl transferase 4-like LC20_07350 PF00534 Glycosyl transferases group 1 LC20_07360 PF00871 Acetokinase family LC20_07365 PF02361 Cobalt transport protein LC20_07390 PF00577 Outer membrane usher protein LC20_07390 PF13953 PapC C-terminal domain LC20_07390 PF13954 PapC N-terminal domain LC20_07395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LC20_07395 PF02753 Pili assembly chaperone PapD, C-terminal domain LC20_07410 PF00313 'Cold-shock' DNA-binding domain LC20_07415 PF01339 CheB methylesterase LC20_07415 PF00072 Response regulator receiver domain LC20_07420 PF02120 Flagellar hook-length control protein FliK LC20_07430 PF05364 Salmonella type III secretion SopE effector N-terminus LC20_07430 PF07487 SopE GEF domain LC20_07445 PF04261 Dyp-type peroxidase family LC20_07470 PF06942 GlpM protein LC20_07500 PF00872 Transposase, Mutator family LC20_07505 PF00872 Transposase, Mutator family LC20_07525 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LC20_07530 PF03848 Tellurite resistance protein TehB LC20_07530 PF09313 Domain of unknown function (DUF1971) LC20_07535 PF00202 Aminotransferase class-III LC20_07540 PF04958 Arginine N-succinyltransferase beta subunit LC20_07545 PF00171 Aldehyde dehydrogenase family LC20_07555 PF03610 PTS system fructose IIA component LC20_07575 PF00288 GHMP kinases N terminal domain LC20_07575 PF08544 GHMP kinases C terminal LC20_07590 PF03932 CutC family LC20_07600 PF02075 Crossover junction endodeoxyribonuclease RuvC LC20_07605 PF01297 Zinc-uptake complex component A periplasmic LC20_07610 PF03843 Outer membrane lipoprotein Slp family LC20_07625 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LC20_07640 PF00586 AIR synthase related protein, N-terminal domain LC20_07640 PF02769 AIR synthase related protein, C-terminal domain LC20_07645 PF03372 Endonuclease/Exonuclease/phosphatase family LC20_07670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LC20_07675 PF00528 Binding-protein-dependent transport system inner membrane component LC20_07675 PF12911 N-terminal TM domain of oligopeptide transport permease C LC20_07715 PF01569 PAP2 superfamily LC20_07725 PF04193 PQ loop repeat LC20_07740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LC20_07745 PF14319 Transposase zinc-binding domain LC20_07745 PF04986 Putative transposase LC20_07750 PF00384 Molybdopterin oxidoreductase LC20_07765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_07775 PF00577 Outer membrane usher protein LC20_07775 PF13954 PapC N-terminal domain LC20_07775 PF13953 PapC C-terminal domain LC20_07785 PF00196 Bacterial regulatory proteins, luxR family LC20_07785 PF00072 Response regulator receiver domain LC20_07790 PF13018 Extended Signal Peptide of Type V secretion system LC20_07790 PF05594 Haemagluttinin repeat LC20_07790 PF05594 Haemagluttinin repeat LC20_07790 PF05860 haemagglutination activity domain LC20_07790 PF13332 Hemagglutinin repeat LC20_07790 PF05860 haemagglutination activity domain LC20_07790 PF13018 Extended Signal Peptide of Type V secretion system LC20_07790 PF13332 Hemagglutinin repeat LC20_07795 PF13953 PapC C-terminal domain LC20_07795 PF13954 PapC N-terminal domain LC20_07795 PF00577 Outer membrane usher protein LC20_07815 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LC20_07815 PF00271 Helicase conserved C-terminal domain LC20_07815 PF04408 Helicase associated domain (HA2) LC20_07815 PF11898 Domain of unknown function (DUF3418) LC20_07815 PF00270 DEAD/DEAH box helicase LC20_07820 PF00388 Phosphatidylinositol-specific phospholipase C, X domain LC20_07825 PF01544 CorA-like Mg2+ transporter protein LC20_07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_07860 PF03466 LysR substrate binding domain LC20_07875 PF00356 Bacterial regulatory proteins, lacI family LC20_07905 PF01497 Periplasmic binding protein LC20_07910 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LC20_07915 PF03483 B3/4 domain LC20_07915 PF03147 Ferredoxin-fold anticodon binding domain LC20_07915 PF03484 tRNA synthetase B5 domain LC20_07915 PF01588 Putative tRNA binding domain LC20_07915 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LC20_07920 PF01632 Ribosomal protein L35 LC20_07925 PF05198 Translation initiation factor IF-3, N-terminal domain LC20_07925 PF00707 Translation initiation factor IF-3, C-terminal domain LC20_07930 PF04474 Protein of unknown function (DUF554) LC20_07940 PF01914 MarC family integral membrane protein LC20_07945 PF00005 ABC transporter LC20_07950 PF03572 Peptidase family S41 LC20_07950 PF17804 Tail specific protease N-terminal domain LC20_07950 PF00595 PDZ domain LC20_07950 PF11818 C-terminal domain of tail specific protease (DUF3340) LC20_07955 PF04403 Paraquat-inducible protein A LC20_07980 PF14319 Transposase zinc-binding domain LC20_07980 PF04986 Putative transposase LC20_08020 PF02048 Heat-stable enterotoxin ST LC20_08025 PF04986 Putative transposase LC20_08025 PF14319 Transposase zinc-binding domain LC20_08030 PF00313 'Cold-shock' DNA-binding domain LC20_08075 PF07102 Protein of unknown function (DUF1364) LC20_08145 PF04957 Ribosome modulation factor LC20_08180 PF14319 Transposase zinc-binding domain LC20_08180 PF04986 Putative transposase LC20_08200 PF01212 Beta-eliminating lyase LC20_08230 PF00528 Binding-protein-dependent transport system inner membrane component LC20_08230 PF12911 N-terminal TM domain of oligopeptide transport permease C LC20_08235 PF01386 Ribosomal L25p family LC20_08260 PF00872 Transposase, Mutator family LC20_08285 PF00872 Transposase, Mutator family LC20_08295 PF02405 Permease MlaE LC20_08305 PF02378 Phosphotransferase system, EIIC LC20_08305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LC20_08305 PF00367 phosphotransferase system, EIIB LC20_08310 PF04976 DMSO reductase anchor subunit (DmsC) LC20_08320 PF00155 Aminotransferase class I and II LC20_08415 PF00528 Binding-protein-dependent transport system inner membrane component LC20_08425 PF00248 Aldo/keto reductase family LC20_08430 PF01515 Phosphate acetyl/butaryl transferase LC20_08430 PF00390 Malic enzyme, N-terminal domain LC20_08430 PF03949 Malic enzyme, NAD binding domain LC20_08450 PF01769 Divalent cation transporter LC20_08450 PF03448 MgtE intracellular N domain LC20_08450 PF00571 CBS domain LC20_08470 PF07690 Major Facilitator Superfamily LC20_08475 PF02601 Exonuclease VII, large subunit LC20_08475 PF13742 OB-fold nucleic acid binding domain LC20_08490 PF01380 SIS domain LC20_08495 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LC20_08510 PF07022 Bacteriophage CI repressor helix-turn-helix domain LC20_08510 PF16452 Bacteriophage CI repressor C-terminal domain LC20_08620 PF12084 Protein of unknown function (DUF3561) LC20_08635 PF00872 Transposase, Mutator family LC20_08660 PF03104 DNA polymerase family B, exonuclease domain LC20_08660 PF00136 DNA polymerase family B LC20_08675 PF08254 Threonine leader peptide LC20_08710 PF07256 Protein of unknown function (DUF1435) LC20_08735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LC20_08735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LC20_08775 PF17862 AAA+ lid domain LC20_08775 PF01434 Peptidase family M41 LC20_08775 PF00004 ATPase family associated with various cellular activities (AAA) LC20_08775 PF06480 FtsH Extracellular LC20_08780 PF00056 lactate/malate dehydrogenase, NAD binding domain LC20_08780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LC20_08785 PF00436 Single-strand binding protein family LC20_08815 PF13247 4Fe-4S dicluster domain LC20_08815 PF12800 4Fe-4S binding domain LC20_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LC20_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LC20_08855 PF02770 Acyl-CoA dehydrogenase, middle domain LC20_08870 PF00771 FHIPEP family LC20_08910 PF03144 Elongation factor Tu domain 2 LC20_08910 PF00009 Elongation factor Tu GTP binding domain LC20_08910 PF03143 Elongation factor Tu C-terminal domain LC20_08960 PF00902 Sec-independent protein translocase protein (TatC) LC20_08965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_08965 PF03466 LysR substrate binding domain LC20_08995 PF00295 Glycosyl hydrolases family 28 LC20_09000 PF08046 IlvGEDA operon leader peptide LC20_09020 PF00239 Resolvase, N terminal domain LC20_09020 PF02796 Helix-turn-helix domain of resolvase LC20_09025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LC20_09025 PF03466 LysR substrate binding domain LC20_09095 PF00471 Ribosomal protein L33 LC20_09115 PF04606 Ogr/Delta-like zinc finger LC20_09125 PF00872 Transposase, Mutator family LC20_09140 PF03616 Sodium/glutamate symporter LC20_09180 PF04986 Putative transposase LC20_09180 PF14319 Transposase zinc-binding domain LC20_09195 PF00005 ABC transporter LC20_09200 PF00825 Ribonuclease P LC20_09215 PF00872 Transposase, Mutator family LC20_09240 PF18272 single-stranded DNA binding TraI N-terminal subdomain LC20_09240 PF07057 DNA helicase TraI LC20_09240 PF18340 DNA relaxase TraI 2B/2B-like domain LC20_09240 PF08751 TrwC relaxase LC20_09250 PF00872 Transposase, Mutator family LC20_09255 PF09676 Type IV conjugative transfer system lipoprotein (TraV) LC20_09330 PF01555 DNA methylase LC20_09335 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system