locus-tag class description CH47_1 PF13247 4Fe-4S dicluster domain CH47_10 PF00586 AIR synthase related protein, N-terminal domain CH47_10 PF02769 AIR synthase related protein, C-terminal domain CH47_1000 PF02698 DUF218 domain CH47_1002 PF17192 MukF middle domain CH47_1002 PF17193 MukF C-terminal domain CH47_1002 PF03882 MukF winged-helix domain CH47_1003 PF04288 MukE-like family CH47_1004 PF16330 MukB hinge domain CH47_1004 PF04310 MukB N-terminal CH47_1005 PF01471 Putative peptidoglycan binding domain CH47_1005 PF03734 L,D-transpeptidase catalytic domain CH47_1006 PF05951 Bacterial protein of unknown function (DUF882) CH47_1007 PF00753 Metallo-beta-lactamase superfamily CH47_1008 PF00563 EAL domain CH47_1008 PF12792 CSS motif domain associated with EAL CH47_1009 PF00155 Aminotransferase class I and II CH47_1010 PF00267 Gram-negative porin CH47_1011 PF00152 tRNA synthetases class II (D, K and N) CH47_1011 PF01336 OB-fold nucleic acid binding domain CH47_1012 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH47_1012 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH47_1014 PF01433 Peptidase family M1 domain CH47_1014 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH47_1014 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH47_1015 PF01180 Dihydroorotate dehydrogenase CH47_1016 PF07126 Cell-division protein ZapC CH47_1017 PF03473 MOSC domain CH47_1017 PF00111 2Fe-2S iron-sulfur cluster binding domain CH47_1017 PF03476 MOSC N-terminal beta barrel domain CH47_1018 PF10672 S-adenosylmethionine-dependent methyltransferase CH47_1018 PF02926 THUMP domain CH47_1018 PF01170 Putative RNA methylase family UPF0020 CH47_1019 PF00005 ABC transporter CH47_1019 PF16326 ABC transporter C-terminal domain CH47_1019 PF12848 ABC transporter CH47_1020 PF04403 Paraquat-inducible protein A CH47_1021 PF02470 MlaD protein CH47_1022 PF03886 ABC-type transport auxiliary lipoprotein component CH47_1023 PF04957 Ribosome modulation factor CH47_1024 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_1024 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_1026 PF07977 FabA-like domain CH47_1027 PF13654 AAA domain CH47_1027 PF05362 Lon protease (S16) C-terminal proteolytic domain CH47_1028 PF06303 MatP N-terminal domain CH47_1028 PF17414 MatP C-terminal ribbon-helix-helix domain CH47_1029 PF00691 OmpA family CH47_1029 PF01389 OmpA-like transmembrane domain CH47_103 PF00589 Phage integrase family CH47_1030 PF03846 Cell division inhibitor SulA CH47_1031 PF04994 TfoX C-terminal domain CH47_1031 PF04993 TfoX N-terminal domain CH47_1032 PF12805 FUSC-like inner membrane protein yccS CH47_1033 PF03733 Inner membrane component domain CH47_1034 PF12462 DNA helicase IV / RNA helicase N terminal CH47_1034 PF00580 UvrD/REP helicase N-terminal domain CH47_1034 PF13361 UvrD-like helicase C-terminal domain CH47_1035 PF02142 MGS-like domain CH47_1036 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH47_1037 PF13380 CoA binding domain CH47_1038 PF08755 Hemimethylated DNA-binding protein YccV like CH47_1039 PF17785 PUA-like domain CH47_1039 PF10672 S-adenosylmethionine-dependent methyltransferase CH47_1042 PF00708 Acylphosphatase CH47_1043 PF04358 DsrC like protein CH47_1045 PF00765 Autoinducer synthase CH47_1046 PF03472 Autoinducer binding domain CH47_1046 PF00196 Bacterial regulatory proteins, luxR family CH47_1048 PF03471 Transporter associated domain CH47_1048 PF00999 Sodium/hydrogen exchanger family CH47_1048 PF02080 TrkA-C domain CH47_105 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH47_105 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH47_105 PF01276 Orn/Lys/Arg decarboxylase, major domain CH47_1050 PF01757 Acyltransferase family CH47_1051 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH47_1052 PF00535 Glycosyl transferase family 2 CH47_1053 PF07119 Protein of unknown function (DUF1375) CH47_1055 PF00854 POT family CH47_1056 PF07690 Major Facilitator Superfamily CH47_1057 PF07681 DoxX CH47_1058 PF03279 Bacterial lipid A biosynthesis acyltransferase CH47_1059 PF00196 Bacterial regulatory proteins, luxR family CH47_1059 PF00072 Response regulator receiver domain CH47_1060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1060 PF00512 His Kinase A (phospho-acceptor) domain CH47_1061 PF13247 4Fe-4S dicluster domain CH47_1062 PF03916 Polysulphide reductase, NrfD CH47_1063 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_1063 PF00384 Molybdopterin oxidoreductase CH47_1063 PF01568 Molydopterin dinucleotide binding domain CH47_1066 PF01594 AI-2E family transporter CH47_1067 PF00196 Bacterial regulatory proteins, luxR family CH47_1068 PF01266 FAD dependent oxidoreductase CH47_1069 PF13991 BssS protein family CH47_107 PF01464 Transglycosylase SLT domain CH47_107 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH47_1070 PF06183 DinI-like family CH47_1071 PF01979 Amidohydrolase family CH47_1072 PF03992 Antibiotic biosynthesis monooxygenase CH47_1073 PF13276 HTH-like domain CH47_1073 PF13333 Integrase core domain CH47_1073 PF00665 Integrase core domain CH47_1076 PF00575 S1 RNA binding domain CH47_1076 PF10150 Ribonuclease E/G family CH47_1076 PF12111 Polyribonucleotide phosphorylase C terminal CH47_1077 PF01479 S4 domain CH47_1077 PF00849 RNA pseudouridylate synthase CH47_1078 PF02545 Maf-like protein CH47_1079 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH47_108 PF04362 Bacterial Fe(2+) trafficking CH47_1080 PF01783 Ribosomal L32p protein family CH47_1081 PF02504 Fatty acid synthesis protein CH47_1082 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH47_1082 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH47_1083 PF00698 Acyl transferase domain CH47_1085 PF00550 Phosphopantetheine attachment site CH47_1086 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_1086 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_1087 PF01063 Amino-transferase class IV CH47_1088 PF02618 YceG-like family CH47_1089 PF02223 Thymidylate kinase CH47_109 PF10576 Iron-sulfur binding domain of endonuclease III CH47_109 PF14815 NUDIX domain CH47_109 PF00633 Helix-hairpin-helix motif CH47_109 PF00730 HhH-GPD superfamily base excision DNA repair protein CH47_1090 PF09115 DNA polymerase III, delta subunit, C terminal CH47_1091 PF01026 TatD related DNase CH47_1092 PF02378 Phosphotransferase system, EIIC CH47_1092 PF00367 phosphotransferase system, EIIB CH47_1093 PF03412 Peptidase C39 family CH47_1093 PF00005 ABC transporter CH47_1093 PF00664 ABC transporter transmembrane region CH47_1095 PF13186 Iron-sulfur cluster-binding domain CH47_1095 PF04055 Radical SAM superfamily CH47_1096 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_1096 PF12793 Sugar transport-related sRNA regulator N-term CH47_1097 PF08501 Shikimate dehydrogenase substrate binding domain CH47_1098 PF01230 HIT domain CH47_1099 PF07233 Protein of unknown function (DUF1425) CH47_11 PF17788 HypF Kae1-like domain CH47_11 PF01300 Telomere recombination CH47_11 PF07503 HypF finger CH47_11 PF00708 Acylphosphatase CH47_110 PF02390 Putative methyltransferase CH47_1100 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH47_1100 PF13036 Peptidoglycan-synthase activator LpoB CH47_1101 PF01636 Phosphotransferase enzyme family CH47_1102 PF00933 Glycosyl hydrolase family 3 N terminal domain CH47_1103 PF05728 Uncharacterised protein family (UPF0227) CH47_1104 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_1105 PF05433 Glycine zipper 2TM domain CH47_1106 PF17757 UvrB interaction domain CH47_1106 PF00271 Helicase conserved C-terminal domain CH47_1106 PF00270 DEAD/DEAH box helicase CH47_1106 PF02559 CarD-like/TRCF domain CH47_1106 PF03461 TRCF domain CH47_1107 PF12704 MacB-like periplasmic core domain CH47_1107 PF02687 FtsX-like permease family CH47_1108 PF00005 ABC transporter CH47_1109 PF12704 MacB-like periplasmic core domain CH47_1109 PF02687 FtsX-like permease family CH47_111 PF04320 Protein with unknown function (DUF469) CH47_1110 PF00480 ROK family CH47_1111 PF02146 Sir2 family CH47_1112 PF07687 Peptidase dimerisation domain CH47_1112 PF01546 Peptidase family M20/M25/M40 CH47_1113 PF08007 Cupin superfamily protein CH47_1114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1114 PF08918 PhoQ Sensor CH47_1115 PF00072 Response regulator receiver domain CH47_1115 PF00486 Transcriptional regulatory protein, C terminal CH47_1117 PF00206 Lyase CH47_1117 PF08328 Adenylosuccinate lyase C-terminal CH47_1118 PF04356 Protein of unknown function (DUF489) CH47_112 PF04960 Glutaminase CH47_1120 PF00293 NUDIX domain CH47_1121 PF00849 RNA pseudouridylate synthase CH47_1122 PF00180 Isocitrate/isopropylmalate dehydrogenase CH47_1126 PF00356 Bacterial regulatory proteins, lacI family CH47_1126 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_113 PF11101 Protein of unknown function (DUF2884) CH47_1130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_1130 PF08447 PAS fold CH47_1132 PF11799 impB/mucB/samB family C-terminal domain CH47_1132 PF00817 impB/mucB/samB family CH47_1132 PF13438 Domain of unknown function (DUF4113) CH47_1133 PF00717 Peptidase S24-like CH47_1134 PF01053 Cys/Met metabolism PLP-dependent enzyme CH47_1135 PF05368 NmrA-like family CH47_1136 PF01638 HxlR-like helix-turn-helix CH47_114 PF06969 HemN C-terminal domain CH47_114 PF04055 Radical SAM superfamily CH47_1140 PF00892 EamA-like transporter family CH47_1142 PF07007 Lysozyme inhibitor LprI CH47_1144 PF06411 HdeA/HdeB family CH47_1146 PF03702 Anhydro-N-acetylmuramic acid kinase CH47_1147 PF02371 Transposase IS116/IS110/IS902 family CH47_1147 PF01548 Transposase CH47_1148 PF00360 Phytochrome region CH47_1148 PF00990 Diguanylate cyclase, GGDEF domain CH47_1148 PF01590 GAF domain CH47_1148 PF00563 EAL domain CH47_115 PF01725 Ham1 family CH47_1150 PF00005 ABC transporter CH47_1150 PF00664 ABC transporter transmembrane region CH47_1152 PF13520 Amino acid permease CH47_1154 PF12833 Helix-turn-helix domain CH47_1156 PF10964 Protein of unknown function (DUF2766) CH47_1157 PF13996 YobH-like protein CH47_1158 PF13974 YebO-like protein CH47_116 PF02594 Uncharacterised ACR, YggU family COG1872 CH47_1161 PF00324 Amino acid permease CH47_1162 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH47_1163 PF10736 Protein of unknown function (DUF2627) CH47_1164 PF00313 'Cold-shock' DNA-binding domain CH47_1166 PF00905 Penicillin binding protein transpeptidase domain CH47_1166 PF03717 Penicillin-binding Protein dimerisation domain CH47_1167 PF13847 Methyltransferase domain CH47_1169 PF00563 EAL domain CH47_1169 PF05231 MASE1 CH47_1169 PF08447 PAS fold CH47_1169 PF08448 PAS fold CH47_1169 PF13426 PAS domain CH47_1169 PF00990 Diguanylate cyclase, GGDEF domain CH47_117 PF02325 YGGT family CH47_1170 PF07715 TonB-dependent Receptor Plug Domain CH47_1170 PF00593 TonB dependent receptor CH47_1171 PF02659 Putative manganese efflux pump CH47_1172 PF06173 Protein of unknown function (DUF986) CH47_1173 PF03613 PTS system mannose/fructose/sorbose family IID component CH47_1174 PF03609 PTS system sorbose-specific iic component CH47_1175 PF03830 PTS system sorbose subfamily IIB component CH47_1175 PF03610 PTS system fructose IIA component CH47_1176 PF03471 Transporter associated domain CH47_1176 PF03741 Integral membrane protein TerC family CH47_1177 PF02048 Heat-stable enterotoxin ST CH47_1178 PF03313 Serine dehydratase alpha chain CH47_1178 PF03315 Serine dehydratase beta chain CH47_1179 PF00293 NUDIX domain CH47_118 PF03807 NADP oxidoreductase coenzyme F420-dependent CH47_118 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH47_1180 PF00425 chorismate binding enzyme CH47_1180 PF04715 Anthranilate synthase component I, N terminal region CH47_1181 PF03701 Uncharacterised protein family (UPF0181) CH47_1182 PF02222 ATP-grasp domain CH47_1183 PF00271 Helicase conserved C-terminal domain CH47_1183 PF00270 DEAD/DEAH box helicase CH47_1183 PF03880 DbpA RNA binding domain CH47_1184 PF07130 YebG protein CH47_1186 PF13995 YebF-like protein CH47_1187 PF00326 Prolyl oligopeptidase family CH47_1187 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH47_1188 PF00929 Exonuclease CH47_1189 PF02371 Transposase IS116/IS110/IS902 family CH47_1189 PF01548 Transposase CH47_119 PF01168 Alanine racemase, N-terminal domain CH47_1191 PF00561 alpha/beta hydrolase fold CH47_1192 PF06440 DNA polymerase III, theta subunit CH47_1193 PF00210 Ferritin-like domain CH47_1194 PF04234 CopC domain CH47_1195 PF05425 Copper resistance protein D CH47_1196 PF10709 Protein of unknown function (DUF2511) CH47_1197 PF02899 Phage integrase, N-terminal SAM-like domain CH47_1197 PF00589 Phage integrase family CH47_1198 PF04606 Ogr/Delta-like zinc finger CH47_12 PF02110 Hydroxyethylthiazole kinase family CH47_120 PF00437 Type II/IV secretion system protein CH47_1207 PF04754 Putative transposase, YhgA-like CH47_1209 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH47_121 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH47_1210 PF07484 Phage Tail Collar Domain CH47_1218 PF04221 RelB antitoxin CH47_1219 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CH47_122 PF00795 Carbon-nitrogen hydrolase CH47_1220 PF04754 Putative transposase, YhgA-like CH47_123 PF03652 Holliday junction resolvase CH47_1234 PF01527 Transposase CH47_1235 PF00665 Integrase core domain CH47_1235 PF13276 HTH-like domain CH47_1235 PF13333 Integrase core domain CH47_124 PF02622 Uncharacterized ACR, COG1678 CH47_1240 PF06616 BsuBI/PstI restriction endonuclease domain CH47_1240 PF17728 BsuBI/PstI restriction endonuclease HTH domain CH47_1242 PF01527 Transposase CH47_1243 PF13276 HTH-like domain CH47_1243 PF13683 Integrase core domain CH47_125 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH47_125 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH47_1250 PF03245 Bacteriophage Rz lysis protein CH47_1252 PF13505 Outer membrane protein beta-barrel domain CH47_1253 PF13276 HTH-like domain CH47_1253 PF00665 Integrase core domain CH47_1253 PF13333 Integrase core domain CH47_1256 PF13333 Integrase core domain CH47_1256 PF13276 HTH-like domain CH47_1256 PF00665 Integrase core domain CH47_1257 PF01527 Transposase CH47_126 PF04452 RNA methyltransferase CH47_1261 PF01066 CDP-alcohol phosphatidyltransferase CH47_1262 PF01541 GIY-YIG catalytic domain CH47_1262 PF02151 UvrB/uvrC motif CH47_1262 PF08459 UvrC Helix-hairpin-helix N-terminal CH47_1263 PF00196 Bacterial regulatory proteins, luxR family CH47_1263 PF00072 Response regulator receiver domain CH47_1264 PF10769 Protein of unknown function (DUF2594) CH47_1265 PF06942 GlpM protein CH47_127 PF04231 Endonuclease I CH47_1270 PF06530 Phage antitermination protein Q CH47_1273 PF10753 Toxin GhoT_OrtT CH47_1275 PF00959 Phage lysozyme CH47_1276 PF00561 alpha/beta hydrolase fold CH47_1277 PF01479 S4 domain CH47_1277 PF00849 RNA pseudouridylate synthase CH47_1278 PF03616 Sodium/glutamate symporter CH47_1278 PF03616 Sodium/glutamate symporter CH47_128 PF17283 SprT-like zinc ribbon domain CH47_128 PF10263 SprT-like family CH47_1282 PF00924 Mechanosensitive ion channel CH47_1283 PF14834 Glutathione S-transferase, C-terminal domain CH47_1283 PF02798 Glutathione S-transferase, N-terminal domain CH47_1288 PF07351 Protein of unknown function (DUF1480) CH47_1289 PF00360 Phytochrome region CH47_1289 PF01590 GAF domain CH47_1289 PF00990 Diguanylate cyclase, GGDEF domain CH47_1289 PF00563 EAL domain CH47_1296 PF07690 Major Facilitator Superfamily CH47_1297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1297 PF03466 LysR substrate binding domain CH47_1298 PF02470 MlaD protein CH47_1299 PF04403 Paraquat-inducible protein A CH47_130 PF04143 Sulphur transport CH47_1300 PF13185 GAF domain CH47_1301 PF04352 ProQ/FINO family CH47_1301 PF17516 ProQ C-terminal domain CH47_1302 PF17804 Tail specific protease N-terminal domain CH47_1302 PF03572 Peptidase family S41 CH47_1302 PF00595 PDZ domain CH47_1302 PF11818 C-terminal domain of tail specific protease (DUF3340) CH47_1303 PF01435 Peptidase family M48 CH47_1304 PF02371 Transposase IS116/IS110/IS902 family CH47_1304 PF01548 Transposase CH47_1309 PF07690 Major Facilitator Superfamily CH47_1310 PF14583 Oligogalacturonate lyase CH47_1311 PF01614 Bacterial transcriptional regulator CH47_1311 PF09339 IclR helix-turn-helix domain CH47_1312 PF01510 N-acetylmuramoyl-L-alanine amidase CH47_1314 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH47_1315 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH47_1316 PF01547 Bacterial extracellular solute-binding protein CH47_1317 PF03459 TOBE domain CH47_1317 PF17912 MalK OB fold domain CH47_1317 PF00005 ABC transporter CH47_1318 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1319 PF00528 Binding-protein-dependent transport system inner membrane component CH47_132 PF02772 S-adenosylmethionine synthetase, central domain CH47_132 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH47_132 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH47_1320 PF06917 Periplasmic pectate lyase CH47_1322 PF04962 KduI/IolB family CH47_1323 PF07883 Cupin domain CH47_1324 PF13419 Haloacid dehalogenase-like hydrolase CH47_1325 PF14002 YniB-like protein CH47_1326 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH47_1326 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH47_1327 PF03466 LysR substrate binding domain CH47_1327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1328 PF00378 Enoyl-CoA hydratase/isomerase CH47_133 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH47_133 PF17944 Arginine decarboxylase C-terminal helical extension CH47_133 PF17810 Arginine decarboxylase helical bundle domain CH47_1330 PF02310 B12 binding domain CH47_1330 PF01642 Methylmalonyl-CoA mutase CH47_1332 PF00950 ABC 3 transport family CH47_1333 PF00950 ABC 3 transport family CH47_1334 PF00005 ABC transporter CH47_1335 PF01297 Zinc-uptake complex component A periplasmic CH47_1336 PF01464 Transglycosylase SLT domain CH47_1337 PF01914 MarC family integral membrane protein CH47_134 PF00355 Rieske [2Fe-2S] domain CH47_1345 PF13619 KTSC domain CH47_1346 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH47_1346 PF02824 TGS domain CH47_1346 PF03129 Anticodon binding domain CH47_1346 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH47_1347 PF05198 Translation initiation factor IF-3, N-terminal domain CH47_1347 PF00707 Translation initiation factor IF-3, C-terminal domain CH47_1348 PF01632 Ribosomal protein L35 CH47_1349 PF00453 Ribosomal protein L20 CH47_135 PF01435 Peptidase family M48 CH47_1350 PF01409 tRNA synthetases class II core domain (F) CH47_1350 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH47_1351 PF01588 Putative tRNA binding domain CH47_1351 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH47_1351 PF03147 Ferredoxin-fold anticodon binding domain CH47_1351 PF03483 B3/4 domain CH47_1351 PF03484 tRNA synthetase B5 domain CH47_1352 PF00216 Bacterial DNA-binding protein CH47_1353 PF01527 Transposase CH47_1355 PF04754 Putative transposase, YhgA-like CH47_1357 PF01850 PIN domain CH47_1358 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CH47_136 PF00456 Transketolase, thiamine diphosphate binding domain CH47_136 PF02780 Transketolase, C-terminal domain CH47_136 PF02779 Transketolase, pyrimidine binding domain CH47_1362 PF05154 TM2 domain CH47_1363 PF14850 DNA-binding domain of Proline dehydrogenase CH47_1363 PF00171 Aldehyde dehydrogenase family CH47_1363 PF01619 Proline dehydrogenase CH47_1363 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH47_1364 PF00474 Sodium:solute symporter family CH47_1368 PF05638 Type VI secretion system effector, Hcp CH47_1370 PF03239 Iron permease FTR1 family CH47_1371 PF09375 Imelysin CH47_1371 PF13473 Cupredoxin-like domain CH47_1372 PF04261 Dyp-type peroxidase family CH47_1373 PF03358 NADPH-dependent FMN reductase CH47_1375 PF01344 Kelch motif CH47_1376 PF00860 Permease family CH47_1377 PF01613 Flavin reductase like domain CH47_1378 PF00881 Nitroreductase family CH47_1379 PF12697 Alpha/beta hydrolase family CH47_1380 PF01042 Endoribonuclease L-PSP CH47_1381 PF00857 Isochorismatase family CH47_1382 PF00296 Luciferase-like monooxygenase CH47_1383 PF00440 Bacterial regulatory proteins, tetR family CH47_1383 PF08362 YcdC-like protein, C-terminal region CH47_1384 PF00324 Amino acid permease CH47_1395 PF08241 Methyltransferase domain CH47_14 PF00990 Diguanylate cyclase, GGDEF domain CH47_14 PF08447 PAS fold CH47_14 PF08448 PAS fold CH47_14 PF00563 EAL domain CH47_140 PF05261 TraM protein, DNA-binding CH47_1400 PF02806 Alpha amylase, C-terminal all-beta domain CH47_1400 PF00128 Alpha amylase, catalytic domain CH47_1402 PF00330 Aconitase family (aconitate hydratase) CH47_1402 PF00694 Aconitase C-terminal domain CH47_1403 PF00925 GTP cyclohydrolase II CH47_1404 PF01569 PAP2 superfamily CH47_1405 PF06305 Lipopolysaccharide assembly protein A domain CH47_1406 PF18073 Rubredoxin metal binding domain CH47_1408 PF03594 Benzoate membrane transport protein CH47_1409 PF07338 Protein of unknown function (DUF1471) CH47_141 PF01464 Transglycosylase SLT domain CH47_1410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH47_1411 PF01253 Translation initiation factor SUI1 CH47_1412 PF05433 Glycine zipper 2TM domain CH47_1413 PF00596 Class II Aldolase and Adducin N-terminal domain CH47_1415 PF00455 DeoR C terminal sensor domain CH47_1415 PF08220 DeoR-like helix-turn-helix domain CH47_1416 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH47_1417 PF04328 Selenoprotein, putative CH47_1418 PF13722 5TM C-terminal transporter carbon starvation CstA CH47_1418 PF02554 Carbon starvation protein CstA CH47_1419 PF00773 RNB domain CH47_1419 PF08206 Ribonuclease B OB domain CH47_1419 PF00575 S1 RNA binding domain CH47_1420 PF00384 Molybdopterin oxidoreductase CH47_1424 PF00730 HhH-GPD superfamily base excision DNA repair protein CH47_1424 PF00633 Helix-hairpin-helix motif CH47_1424 PF10576 Iron-sulfur binding domain of endonuclease III CH47_1425 PF02508 Rnf-Nqr subunit, membrane protein CH47_1426 PF04205 FMN-binding domain CH47_1427 PF03116 NQR2, RnfD, RnfE family CH47_1428 PF06445 GyrI-like small molecule binding domain CH47_1428 PF12833 Helix-turn-helix domain CH47_1429 PF10531 SLBB domain CH47_1429 PF13237 4Fe-4S dicluster domain CH47_1429 PF13375 RnfC Barrel sandwich hybrid domain CH47_1429 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH47_143 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH47_143 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH47_1430 PF04060 Putative Fe-S cluster CH47_1431 PF02508 Rnf-Nqr subunit, membrane protein CH47_1432 PF10754 Protein of unknown function (DUF2569) CH47_1433 PF01268 Formate--tetrahydrofolate ligase CH47_1434 PF00664 ABC transporter transmembrane region CH47_1434 PF00005 ABC transporter CH47_1434 PF03412 Peptidase C39 family CH47_1436 PF00005 ABC transporter CH47_1436 PF03412 Peptidase C39 family CH47_1436 PF00664 ABC transporter transmembrane region CH47_1437 PF11762 L-arabinose isomerase C-terminal domain CH47_1437 PF02610 L-arabinose isomerase CH47_1438 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_1439 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_144 PF00162 Phosphoglycerate kinase CH47_1440 PF00005 ABC transporter CH47_1441 PF02653 Branched-chain amino acid transport system / permease component CH47_1442 PF02311 AraC-like ligand binding domain CH47_1442 PF12833 Helix-turn-helix domain CH47_1443 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH47_1443 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH47_1444 PF13593 SBF-like CPA transporter family (DUF4137) CH47_1445 PF00962 Adenosine/AMP deaminase CH47_1446 PF00155 Aminotransferase class I and II CH47_1447 PF00367 phosphotransferase system, EIIB CH47_1447 PF02378 Phosphotransferase system, EIIC CH47_1448 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_1449 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_1449 PF00356 Bacterial regulatory proteins, lacI family CH47_145 PF01116 Fructose-bisphosphate aldolase class-II CH47_1450 PF06097 Bacterial protein of unknown function (DUF945) CH47_1451 PF01238 Phosphomannose isomerase type I CH47_1452 PF10415 Fumarase C C-terminus CH47_1452 PF00206 Lyase CH47_1454 PF05472 DNA replication terminus site-binding protein (Ter protein) CH47_1457 PF07690 Major Facilitator Superfamily CH47_1458 PF03466 LysR substrate binding domain CH47_1458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1459 PF00480 ROK family CH47_146 PF00924 Mechanosensitive ion channel CH47_146 PF05552 Conserved TM helix CH47_1461 PF00654 Voltage gated chloride channel CH47_1462 PF06649 Protein of unknown function (DUF1161) CH47_1463 PF06932 Protein of unknown function (DUF1283) CH47_1465 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH47_1466 PF00106 short chain dehydrogenase CH47_1467 PF07690 Major Facilitator Superfamily CH47_1468 PF07338 Protein of unknown function (DUF1471) CH47_147 PF01810 LysE type translocator CH47_1475 PF02798 Glutathione S-transferase, N-terminal domain CH47_1477 PF01037 Lrp/AsnC ligand binding domain CH47_1478 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1479 PF00528 Binding-protein-dependent transport system inner membrane component CH47_148 PF04402 Protein of unknown function (DUF541) CH47_1480 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_1483 PF05958 tRNA (Uracil-5-)-methyltransferase CH47_1484 PF03466 LysR substrate binding domain CH47_1484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1485 PF03797 Autotransporter beta-domain CH47_1486 PF00072 Response regulator receiver domain CH47_1486 PF00196 Bacterial regulatory proteins, luxR family CH47_1487 PF03466 LysR substrate binding domain CH47_1487 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1488 PF01048 Phosphorylase superfamily CH47_1488 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH47_1489 PF00356 Bacterial regulatory proteins, lacI family CH47_149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_149 PF03466 LysR substrate binding domain CH47_1490 PF00459 Inositol monophosphatase family CH47_1491 PF07690 Major Facilitator Superfamily CH47_1495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_1495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_1495 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_1496 PF01842 ACT domain CH47_1497 PF13419 Haloacid dehalogenase-like hydrolase CH47_15 PF13533 Biotin-lipoyl like CH47_150 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH47_1501 PF07690 Major Facilitator Superfamily CH47_1502 PF00294 pfkB family carbohydrate kinase CH47_1503 PF00245 Alkaline phosphatase CH47_1505 PF06445 GyrI-like small molecule binding domain CH47_1508 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH47_1508 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH47_1509 PF00027 Cyclic nucleotide-binding domain CH47_1509 PF13545 Crp-like helix-turn-helix domain CH47_151 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_151 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_151 PF01842 ACT domain CH47_1510 PF00582 Universal stress protein family CH47_1511 PF02233 NAD(P) transhydrogenase beta subunit CH47_1512 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH47_1512 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH47_1512 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH47_1513 PF07338 Protein of unknown function (DUF1471) CH47_1514 PF13520 Amino acid permease CH47_1516 PF00072 Response regulator receiver domain CH47_1516 PF00486 Transcriptional regulatory protein, C terminal CH47_1517 PF00512 His Kinase A (phospho-acceptor) domain CH47_1517 PF00672 HAMP domain CH47_1517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1518 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH47_152 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH47_1520 PF00089 Trypsin CH47_1523 PF00270 DEAD/DEAH box helicase CH47_1523 PF11898 Domain of unknown function (DUF3418) CH47_1523 PF04408 Helicase associated domain (HA2) CH47_1523 PF00271 Helicase conserved C-terminal domain CH47_1523 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH47_1525 PF02525 Flavodoxin-like fold CH47_1526 PF04198 Putative sugar-binding domain CH47_1527 PF07027 Protein of unknown function (DUF1318) CH47_1528 PF13617 YnbE-like lipoprotein CH47_1529 PF11739 Dicarboxylate transport CH47_153 PF05164 Cell division protein ZapA CH47_1530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_1530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_1531 PF03891 Domain of unknown function (DUF333) CH47_1532 PF02308 MgtC family CH47_1533 PF00893 Small Multidrug Resistance protein CH47_1534 PF10371 Domain of unknown function CH47_1534 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH47_1534 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH47_1534 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_1534 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH47_1535 PF00232 Glycosyl hydrolase family 1 CH47_1536 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH47_1536 PF02378 Phosphotransferase system, EIIC CH47_1536 PF00367 phosphotransferase system, EIIB CH47_1537 PF00874 PRD domain CH47_1537 PF03123 CAT RNA binding domain CH47_1538 PF01171 PP-loop family CH47_1539 PF01544 CorA-like Mg2+ transporter protein CH47_154 PF03695 Uncharacterised protein family (UPF0149) CH47_1541 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_1542 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH47_1542 PF13378 Enolase C-terminal domain-like CH47_1543 PF00246 Zinc carboxypeptidase CH47_1544 PF08534 Redoxin CH47_1545 PF00158 Sigma-54 interaction domain CH47_1545 PF18024 Helix-turn-helix domain CH47_1548 PF05128 Domain of unknown function (DUF697) CH47_1549 PF04317 YcjX-like family, DUF463 CH47_155 PF00557 Metallopeptidase family M24 CH47_155 PF05195 Aminopeptidase P, N-terminal domain CH47_1551 PF04024 PspC domain CH47_1552 PF06667 Phage shock protein B CH47_1553 PF04012 PspA/IM30 family CH47_1554 PF00158 Sigma-54 interaction domain CH47_1554 PF02954 Bacterial regulatory protein, Fis family CH47_1556 PF02917 Pertussis toxin, subunit 1 CH47_1557 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_1558 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1559 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1559 PF12911 N-terminal TM domain of oligopeptide transport permease C CH47_156 PF01494 FAD binding domain CH47_1560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_1560 PF00005 ABC transporter CH47_1561 PF00005 ABC transporter CH47_1564 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1564 PF03466 LysR substrate binding domain CH47_1565 PF00854 POT family CH47_1567 PF04893 Yip1 domain CH47_1568 PF11656 YjbD family (DUF3811) CH47_1569 PF00043 Glutathione S-transferase, C-terminal domain CH47_1569 PF02798 Glutathione S-transferase, N-terminal domain CH47_157 PF01494 FAD binding domain CH47_1570 PF08543 Phosphomethylpyrimidine kinase CH47_1571 PF01479 S4 domain CH47_1571 PF00579 tRNA synthetases class I (W and Y) CH47_1572 PF01243 Pyridoxamine 5'-phosphate oxidase CH47_1572 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH47_1573 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH47_1574 PF03702 Anhydro-N-acetylmuramic acid kinase CH47_1575 PF05433 Glycine zipper 2TM domain CH47_1576 PF01047 MarR family CH47_1577 PF07869 Protein of unknown function (DUF1656) CH47_1578 PF00529 HlyD membrane-fusion protein of T1SS CH47_1578 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_1579 PF04632 Fusaric acid resistance protein family CH47_158 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH47_158 PF01571 Aminomethyltransferase folate-binding domain CH47_1580 PF00248 Aldo/keto reductase family CH47_1581 PF06945 Protein of unknown function (DUF1289) CH47_1582 PF00884 Sulfatase CH47_1582 PF08019 Phosphoethanolamine transferase EptA/EptB CH47_1583 PF00440 Bacterial regulatory proteins, tetR family CH47_1583 PF16925 Tetracyclin repressor-like, C-terminal domain CH47_1584 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH47_1585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH47_1586 PF00929 Exonuclease CH47_1587 PF00462 Glutaredoxin CH47_1588 PF00877 NlpC/P60 family CH47_1589 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH47_1589 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH47_159 PF01597 Glycine cleavage H-protein CH47_1591 PF00356 Bacterial regulatory proteins, lacI family CH47_1592 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1592 PF03466 LysR substrate binding domain CH47_1593 PF07690 Major Facilitator Superfamily CH47_1595 PF00677 Lumazine binding domain CH47_1596 PF01554 MatE CH47_16 PF00873 AcrB/AcrD/AcrF family CH47_160 PF02347 Glycine cleavage system P-protein CH47_1600 PF02887 Pyruvate kinase, alpha/beta domain CH47_1600 PF00224 Pyruvate kinase, barrel domain CH47_1601 PF04728 Lipoprotein leucine-zipper CH47_1602 PF03734 L,D-transpeptidase catalytic domain CH47_1602 PF17969 L,D-transpeptidase C-terminal domain CH47_1602 PF01476 LysM domain CH47_1603 PF02657 Fe-S metabolism associated domain CH47_1604 PF00266 Aminotransferase class-V CH47_1605 PF01458 Uncharacterized protein family (UPF0051) CH47_1606 PF00005 ABC transporter CH47_1607 PF01458 Uncharacterized protein family (UPF0051) CH47_1608 PF01521 Iron-sulphur cluster biosynthesis CH47_1609 PF03061 Thioesterase superfamily CH47_1610 PF01565 FAD binding domain CH47_1610 PF02913 FAD linked oxidases, C-terminal domain CH47_1610 PF13183 4Fe-4S dicluster domain CH47_1611 PF01594 AI-2E family transporter CH47_1612 PF02896 PEP-utilising enzyme, TIM barrel domain CH47_1612 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH47_1612 PF00391 PEP-utilising enzyme, mobile domain CH47_1613 PF03618 Kinase/pyrophosphorylase CH47_1614 PF00793 DAHP synthetase I family CH47_1615 PF00593 TonB dependent receptor CH47_1615 PF07715 TonB-dependent Receptor Plug Domain CH47_1616 PF05171 Haemin-degrading HemS.ChuX domain CH47_1617 PF01497 Periplasmic binding protein CH47_1618 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH47_1619 PF10437 Bacterial lipoate protein ligase C-terminus CH47_1619 PF03099 Biotin/lipoate A/B protein ligase family CH47_1620 PF00877 NlpC/P60 family CH47_1622 PF00892 EamA-like transporter family CH47_1623 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH47_1624 PF01522 Polysaccharide deacetylase CH47_1625 PF01370 NAD dependent epimerase/dehydratase family CH47_1625 PF02911 Formyl transferase, C-terminal domain CH47_1625 PF00551 Formyl transferase CH47_1626 PF00535 Glycosyl transferase family 2 CH47_1627 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH47_1628 PF00005 ABC transporter CH47_1629 PF00255 Glutathione peroxidase CH47_163 PF03006 Haemolysin-III related CH47_1630 PF01032 FecCD transport family CH47_1632 PF03466 LysR substrate binding domain CH47_1632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1633 PF01131 DNA topoisomerase CH47_1633 PF01751 Toprim domain CH47_1633 PF08272 Topoisomerase I zinc-ribbon-like CH47_1633 PF01396 Topoisomerase DNA binding C4 zinc finger CH47_1634 PF10692 Protein of unknown function (DUF2498) CH47_1635 PF08496 Peptidase family S49 N-terminal CH47_1635 PF01343 Peptidase family S49 CH47_1636 PF00106 short chain dehydrogenase CH47_1637 PF12557 Cob(I)alamin adenosyltransferase N terminal CH47_1637 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH47_1638 PF01479 S4 domain CH47_1638 PF00849 RNA pseudouridylate synthase CH47_1639 PF01300 Telomere recombination CH47_164 PF01571 Aminomethyltransferase folate-binding domain CH47_1640 PF02811 PHP domain CH47_1641 PF04715 Anthranilate synthase component I, N terminal region CH47_1641 PF00425 chorismate binding enzyme CH47_1642 PF00117 Glutamine amidotransferase class-I CH47_1643 PF00591 Glycosyl transferase family, a/b domain CH47_1643 PF02885 Glycosyl transferase family, helical bundle domain CH47_1644 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH47_1644 PF00218 Indole-3-glycerol phosphate synthase CH47_1645 PF00291 Pyridoxal-phosphate dependent enzyme CH47_1646 PF00290 Tryptophan synthase alpha chain CH47_1648 PF03922 OmpW family CH47_1649 PF03692 Putative zinc- or iron-chelating domain CH47_165 PF03937 Flavinator of succinate dehydrogenase CH47_1652 PF04279 Intracellular septation protein A CH47_1653 PF03061 Thioesterase superfamily CH47_1654 PF03544 Gram-negative bacterial TonB protein C-terminal CH47_1655 PF03795 YCII-related domain CH47_1658 PF13396 Phospholipase_D-nuclease N-terminal CH47_1658 PF13091 PLD-like domain CH47_1659 PF04269 Protein of unknown function, DUF440 CH47_166 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH47_1660 PF00005 ABC transporter CH47_1660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_1661 PF00005 ABC transporter CH47_1661 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_1662 PF12911 N-terminal TM domain of oligopeptide transport permease C CH47_1662 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1663 PF00528 Binding-protein-dependent transport system inner membrane component CH47_1664 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_1665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_1666 PF01914 MarC family integral membrane protein CH47_1667 PF00171 Aldehyde dehydrogenase family CH47_1667 PF00465 Iron-containing alcohol dehydrogenase CH47_1669 PF00265 Thymidine kinase CH47_167 PF00072 Response regulator receiver domain CH47_167 PF00486 Transcriptional regulatory protein, C terminal CH47_1670 PF00816 H-NS histone family CH47_1671 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH47_1671 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH47_1671 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH47_1672 PF00072 Response regulator receiver domain CH47_1673 PF01734 Patatin-like phospholipase CH47_1675 PF02810 SEC-C motif CH47_1676 PF00551 Formyl transferase CH47_1676 PF01842 ACT domain CH47_168 PF00672 HAMP domain CH47_168 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_168 PF00512 His Kinase A (phospho-acceptor) domain CH47_1680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1680 PF03466 LysR substrate binding domain CH47_1681 PF03372 Endonuclease/Exonuclease/phosphatase family CH47_1682 PF00293 NUDIX domain CH47_1683 PF07383 Protein of unknown function (DUF1496) CH47_1684 PF01131 DNA topoisomerase CH47_1684 PF01751 Toprim domain CH47_1685 PF02769 AIR synthase related protein, C-terminal domain CH47_1685 PF00586 AIR synthase related protein, N-terminal domain CH47_1686 PF00881 Nitroreductase family CH47_1687 PF01343 Peptidase family S49 CH47_1688 PF17763 Glutaminase/Asparaginase C-terminal domain CH47_1688 PF00710 Asparaginase, N-terminal CH47_1689 PF00857 Isochorismatase family CH47_169 PF06123 Inner membrane protein CreD CH47_1690 PF07023 Protein of unknown function (DUF1315) CH47_1691 PF01641 SelR domain CH47_1692 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH47_1692 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH47_1695 PF01263 Aldose 1-epimerase CH47_1697 PF06629 MltA-interacting protein MipA CH47_1698 PF08298 PrkA AAA domain CH47_1698 PF06798 PrkA serine protein kinase C-terminal domain CH47_1699 PF04285 Protein of unknown function (DUF444) CH47_17 PF00083 Sugar (and other) transporter CH47_17 PF08946 Osmosensory transporter coiled coil CH47_170 PF00258 Flavodoxin CH47_1702 PF03466 LysR substrate binding domain CH47_1702 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1703 PF02678 Pirin CH47_1703 PF05726 Pirin C-terminal cupin domain CH47_1704 PF00990 Diguanylate cyclase, GGDEF domain CH47_1704 PF00563 EAL domain CH47_1704 PF13426 PAS domain CH47_1705 PF07690 Major Facilitator Superfamily CH47_1706 PF00842 Alanine racemase, C-terminal domain CH47_1706 PF01168 Alanine racemase, N-terminal domain CH47_1707 PF01266 FAD dependent oxidoreductase CH47_1708 PF04293 SpoVR like protein CH47_1709 PF07840 FadR C-terminal domain CH47_1709 PF00392 Bacterial regulatory proteins, gntR family CH47_171 PF02899 Phage integrase, N-terminal SAM-like domain CH47_171 PF00589 Phage integrase family CH47_1710 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH47_1711 PF02600 Disulfide bond formation protein DsbB CH47_1712 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_1712 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH47_1718 PF12167 Arm DNA-binding domain CH47_1718 PF00589 Phage integrase family CH47_1719 PF03692 Putative zinc- or iron-chelating domain CH47_172 PF13098 Thioredoxin-like domain CH47_172 PF10411 Disulfide bond isomerase protein N-terminus CH47_1720 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH47_1721 PF13406 Transglycosylase SLT domain CH47_1722 PF05166 YcgL domain CH47_1724 PF03775 Septum formation inhibitor MinC, C-terminal domain CH47_1724 PF05209 Septum formation inhibitor MinC, N-terminal domain CH47_1725 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH47_1726 PF03776 Septum formation topological specificity factor MinE CH47_1727 PF01612 3'-5' exonuclease CH47_1727 PF00570 HRDC domain CH47_1728 PF00501 AMP-binding enzyme CH47_1728 PF13193 AMP-binding enzyme C-terminal domain CH47_1729 PF03843 Outer membrane lipoprotein Slp family CH47_173 PF01368 DHH family CH47_173 PF02272 DHHA1 domain CH47_173 PF17768 RecJ OB domain CH47_1730 PF00814 Glycoprotease family CH47_1731 PF04851 Type III restriction enzyme, res subunit CH47_1731 PF13307 Helicase C-terminal domain CH47_1732 PF01042 Endoribonuclease L-PSP CH47_1733 PF00893 Small Multidrug Resistance protein CH47_1734 PF00893 Small Multidrug Resistance protein CH47_1735 PF01081 KDPG and KHG aldolase CH47_1736 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH47_1736 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH47_1737 PF01418 Helix-turn-helix domain, rpiR family CH47_1737 PF01380 SIS domain CH47_1738 PF00224 Pyruvate kinase, barrel domain CH47_1738 PF02887 Pyruvate kinase, alpha/beta domain CH47_1739 PF03279 Bacterial lipid A biosynthesis acyltransferase CH47_174 PF00472 RF-1 domain CH47_174 PF03462 PCRF domain CH47_1740 PF01551 Peptidase family M23 CH47_1740 PF01476 LysM domain CH47_1740 PF08525 Opacity-associated protein A N-terminal motif CH47_1741 PF01297 Zinc-uptake complex component A periplasmic CH47_1742 PF00005 ABC transporter CH47_1743 PF00950 ABC 3 transport family CH47_1744 PF00854 POT family CH47_1745 PF05491 RuvB C-terminal winged helix domain CH47_1745 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH47_1745 PF17864 RuvB AAA lid domain CH47_1746 PF07499 RuvA, C-terminal domain CH47_1746 PF01330 RuvA N terminal domain CH47_1747 PF02075 Crossover junction endodeoxyribonuclease RuvC CH47_1748 PF01709 Transcriptional regulator CH47_1749 PF00293 NUDIX domain CH47_175 PF01336 OB-fold nucleic acid binding domain CH47_175 PF00152 tRNA synthetases class II (D, K and N) CH47_1751 PF00152 tRNA synthetases class II (D, K and N) CH47_1751 PF01336 OB-fold nucleic acid binding domain CH47_1751 PF02938 GAD domain CH47_1752 PF00857 Isochorismatase family CH47_1753 PF01904 Protein of unknown function DUF72 CH47_1754 PF01124 MAPEG family CH47_1755 PF13649 Methyltransferase domain CH47_1756 PF08003 Protein of unknown function (DUF1698) CH47_1757 PF03932 CutC family CH47_1758 PF06185 YecM protein CH47_1759 PF03485 Arginyl tRNA synthetase N terminal domain CH47_1759 PF05746 DALR anticodon binding domain CH47_1759 PF00750 tRNA synthetases class I (R) CH47_1760 PF05860 haemagglutination activity domain CH47_1760 PF13332 Hemagglutinin repeat CH47_1761 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH47_1761 PF17287 POTRA domain CH47_1761 PF08479 POTRA domain, ShlB-type CH47_1762 PF03023 Lipid II flippase MurJ CH47_1763 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH47_1764 PF04337 Protein of unknown function, DUF480 CH47_1765 PF13302 Acetyltransferase (GNAT) domain CH47_1768 PF07690 Major Facilitator Superfamily CH47_1769 PF07273 Protein of unknown function (DUF1439) CH47_1770 PF02613 Nitrate reductase delta subunit CH47_1771 PF02811 PHP domain CH47_1772 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_1774 PF03009 Glycerophosphoryl diester phosphodiesterase family CH47_1776 PF00990 Diguanylate cyclase, GGDEF domain CH47_1777 PF00916 Sulfate permease family CH47_1777 PF01740 STAS domain CH47_1778 PF00793 DAHP synthetase I family CH47_1779 PF13369 Transglutaminase-like superfamily CH47_1780 PF04247 Invasion gene expression up-regulator, SirB CH47_1781 PF13847 Methyltransferase domain CH47_1781 PF17827 PrmC N-terminal domain CH47_1782 PF03462 PCRF domain CH47_1782 PF00472 RF-1 domain CH47_1783 PF01488 Shikimate / quinate 5-dehydrogenase CH47_1783 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH47_1783 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH47_1784 PF03550 Outer membrane lipoprotein LolB CH47_1785 PF00288 GHMP kinases N terminal domain CH47_1785 PF08544 GHMP kinases C terminal CH47_1786 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH47_1786 PF14572 Phosphoribosyl synthetase-associated domain CH47_1787 PF10762 Protein of unknown function (DUF2583) CH47_1788 PF01195 Peptidyl-tRNA hydrolase CH47_179 PF01022 Bacterial regulatory protein, arsR family CH47_1790 PF01926 50S ribosome-binding GTPase CH47_1790 PF06071 Protein of unknown function (DUF933) CH47_1791 PF00144 Beta-lactamase CH47_1792 PF03466 LysR substrate binding domain CH47_1792 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1793 PF04391 Protein of unknown function (DUF533) CH47_1799 PF00455 DeoR C terminal sensor domain CH47_1799 PF08220 DeoR-like helix-turn-helix domain CH47_180 PF02040 Arsenical pump membrane protein CH47_1800 PF01380 SIS domain CH47_1801 PF01116 Fructose-bisphosphate aldolase class-II CH47_1802 PF01551 Peptidase family M23 CH47_1802 PF01476 LysM domain CH47_1806 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH47_1807 PF05962 HutD CH47_1808 PF01979 Amidohydrolase family CH47_1809 PF07702 UTRA domain CH47_1809 PF00392 Bacterial regulatory proteins, gntR family CH47_181 PF03960 ArsC family CH47_1810 PF01979 Amidohydrolase family CH47_1812 PF00267 Gram-negative porin CH47_1813 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH47_1814 PF04996 Succinylarginine dihydrolase CH47_1815 PF00171 Aldehyde dehydrogenase family CH47_1816 PF04958 Arginine N-succinyltransferase beta subunit CH47_1817 PF00202 Aminotransferase class-III CH47_1818 PF00155 Aminotransferase class I and II CH47_1818 PF00392 Bacterial regulatory proteins, gntR family CH47_1819 PF01654 Cytochrome bd terminal oxidase subunit I CH47_182 PF13474 SnoaL-like domain CH47_1820 PF02322 Cytochrome bd terminal oxidase subunit II CH47_1821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1821 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH47_1821 PF00672 HAMP domain CH47_1821 PF07730 Histidine kinase CH47_1822 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1822 PF03466 LysR substrate binding domain CH47_1823 PF07690 Major Facilitator Superfamily CH47_1825 PF01699 Sodium/calcium exchanger protein CH47_1826 PF02562 PhoH-like protein CH47_1828 PF13994 PgaD-like protein CH47_1829 PF00535 Glycosyl transferase family 2 CH47_183 PF08448 PAS fold CH47_183 PF00990 Diguanylate cyclase, GGDEF domain CH47_1830 PF14883 Hypothetical glycosyl hydrolase family 13 CH47_1830 PF01522 Polysaccharide deacetylase CH47_1832 PF00557 Metallopeptidase family M24 CH47_1833 PF06276 Ferric iron reductase FhuF-like transporter CH47_1833 PF11575 FhuF 2Fe-2S C-terminal domain CH47_1834 PF01411 tRNA synthetases class II (A) CH47_1834 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH47_1834 PF02272 DHHA1 domain CH47_1835 PF03466 LysR substrate binding domain CH47_1835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_1836 PF03848 Tellurite resistance protein TehB CH47_1836 PF09313 Domain of unknown function (DUF1971) CH47_1838 PF00578 AhpC/TSA family CH47_1839 PF02687 FtsX-like permease family CH47_1839 PF00005 ABC transporter CH47_1839 PF12704 MacB-like periplasmic core domain CH47_184 PF01037 Lrp/AsnC ligand binding domain CH47_1841 PF00005 ABC transporter CH47_1841 PF02687 FtsX-like permease family CH47_1841 PF12704 MacB-like periplasmic core domain CH47_1843 PF10634 Fe2+ transport protein CH47_1844 PF03239 Iron permease FTR1 family CH47_1847 PF04960 Glutaminase CH47_1848 PF01261 Xylose isomerase-like TIM barrel CH47_1849 PF00596 Class II Aldolase and Adducin N-terminal domain CH47_1850 PF07005 Sugar-binding N-terminal domain CH47_1850 PF17042 Nucleotide-binding C-terminal domain CH47_1851 PF00455 DeoR C terminal sensor domain CH47_1851 PF08220 DeoR-like helix-turn-helix domain CH47_1852 PF00989 PAS fold CH47_1852 PF17203 Single cache domain 3 CH47_1852 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH47_1852 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1853 PF00072 Response regulator receiver domain CH47_1854 PF03390 2-hydroxycarboxylate transporter family CH47_1855 PF00324 Amino acid permease CH47_1859 PF07690 Major Facilitator Superfamily CH47_186 PF01055 Glycosyl hydrolases family 31 CH47_186 PF16338 Domain of unknown function (DUF4968) CH47_186 PF17137 Domain of unknown function (DUF5110) CH47_186 PF13802 Galactose mutarotase-like CH47_1864 PF00291 Pyridoxal-phosphate dependent enzyme CH47_1865 PF02899 Phage integrase, N-terminal SAM-like domain CH47_1866 PF04542 Sigma-70 region 2 CH47_1866 PF04539 Sigma-70 region 3 CH47_1866 PF04545 Sigma-70, region 4 CH47_1868 PF00700 Bacterial flagellin C-terminal helical region CH47_1868 PF08884 Flagellin D3 domain CH47_1868 PF00669 Bacterial flagellin N-terminal helical region CH47_1869 PF00700 Bacterial flagellin C-terminal helical region CH47_1869 PF08884 Flagellin D3 domain CH47_1869 PF00669 Bacterial flagellin N-terminal helical region CH47_187 PF07690 Major Facilitator Superfamily CH47_1870 PF08884 Flagellin D3 domain CH47_1870 PF00700 Bacterial flagellin C-terminal helical region CH47_1870 PF00669 Bacterial flagellin N-terminal helical region CH47_1871 PF07195 Flagellar hook-associated protein 2 C-terminus CH47_1871 PF07196 Flagellin hook IN motif CH47_1871 PF02465 Flagellar hook-associated protein 2 N-terminus CH47_1872 PF02561 Flagellar protein FliS CH47_1873 PF05400 Flagellar protein FliT CH47_1874 PF12833 Helix-turn-helix domain CH47_1875 PF01966 HD domain CH47_1876 PF00730 HhH-GPD superfamily base excision DNA repair protein CH47_1879 PF02049 Flagellar hook-basal body complex protein FliE CH47_188 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_188 PF00356 Bacterial regulatory proteins, lacI family CH47_1880 PF08345 Flagellar M-ring protein C-terminal CH47_1880 PF01514 Secretory protein of YscJ/FliF family CH47_1881 PF01706 FliG C-terminal domain CH47_1881 PF14841 FliG middle domain CH47_1881 PF14842 FliG N-terminal domain CH47_1882 PF02108 Flagellar assembly protein FliH CH47_1883 PF18269 T3SS EscN ATPase C-terminal domain CH47_1883 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_1884 PF02050 Flagellar FliJ protein CH47_1885 PF02120 Flagellar hook-length control protein FliK CH47_1886 PF03748 Flagellar basal body-associated protein FliL CH47_1887 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH47_1887 PF02154 Flagellar motor switch protein FliM CH47_1888 PF16973 Flagellar motor switch protein FliN N-terminal CH47_1888 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH47_1889 PF04347 Flagellar biosynthesis protein, FliO CH47_189 PF01556 DnaJ C terminal domain CH47_189 PF00226 DnaJ domain CH47_1890 PF00813 FliP family CH47_1891 PF01313 Bacterial export proteins, family 3 CH47_1892 PF01311 Bacterial export proteins, family 1 CH47_1893 PF00669 Bacterial flagellin N-terminal helical region CH47_1894 PF00460 Flagella basal body rod protein CH47_1894 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH47_1895 PF10135 Rod binding protein CH47_1895 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH47_1896 PF02119 Flagellar P-ring protein CH47_1897 PF02107 Flagellar L-ring protein CH47_1898 PF00460 Flagella basal body rod protein CH47_1898 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH47_1899 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH47_1899 PF00460 Flagella basal body rod protein CH47_1900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH47_1900 PF07559 Flagellar basal body protein FlaE CH47_1900 PF00460 Flagella basal body rod protein CH47_1901 PF13860 FlgD Ig-like domain CH47_1901 PF03963 Flagellar hook capping protein - N-terminal region CH47_1901 PF13861 FlgD Tudor-like domain CH47_1902 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH47_1902 PF00460 Flagella basal body rod protein CH47_1903 PF00460 Flagella basal body rod protein CH47_1904 PF13144 Chaperone for flagella basal body P-ring formation CH47_1904 PF17656 FlgA N-terminal domain CH47_1905 PF04316 Anti-sigma-28 factor, FlgM CH47_1906 PF05130 FlgN protein CH47_1907 PF07979 Intimin C-type lectin domain CH47_1907 PF11924 Inverse autotransporter, beta-domain CH47_1907 PF02369 Bacterial Ig-like domain (group 1) CH47_1907 PF09134 Invasin, domain 3 CH47_1908 PF06366 Flagellar protein FlhE CH47_1909 PF00771 FHIPEP family CH47_1910 PF01312 FlhB HrpN YscU SpaS Family CH47_1912 PF04344 Chemotaxis phosphatase, CheZ CH47_1913 PF00072 Response regulator receiver domain CH47_1914 PF00072 Response regulator receiver domain CH47_1914 PF01339 CheB methylesterase CH47_1915 PF01739 CheR methyltransferase, SAM binding domain CH47_1915 PF03705 CheR methyltransferase, all-alpha domain CH47_1916 PF02203 Tar ligand binding domain homologue CH47_1916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_1916 PF00672 HAMP domain CH47_1917 PF02203 Tar ligand binding domain homologue CH47_1917 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_1917 PF00672 HAMP domain CH47_1918 PF01584 CheW-like domain CH47_1919 PF09078 CheY binding CH47_1919 PF02895 Signal transducing histidine kinase, homodimeric domain CH47_1919 PF01584 CheW-like domain CH47_1919 PF01627 Hpt domain CH47_1919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_192 PF01638 HxlR-like helix-turn-helix CH47_1920 PF00691 OmpA family CH47_1920 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH47_1921 PF01618 MotA/TolQ/ExbB proton channel family CH47_1922 PF05280 Flagellar transcriptional activator (FlhC) CH47_1923 PF05247 Flagellar transcriptional activator (FlhD) CH47_1924 PF00582 Universal stress protein family CH47_1925 PF00107 Zinc-binding dehydrogenase CH47_1925 PF16884 N-terminal domain of oxidoreductase CH47_1926 PF00690 Cation transporter/ATPase, N-terminus CH47_1926 PF00689 Cation transporting ATPase, C-terminus CH47_1927 PF02308 MgtC family CH47_1929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_1929 PF02203 Tar ligand binding domain homologue CH47_1929 PF00672 HAMP domain CH47_193 PF00484 Carbonic anhydrase CH47_1930 PF10781 Dextransucrase DSRB CH47_1932 PF00313 'Cold-shock' DNA-binding domain CH47_1933 PF00356 Bacterial regulatory proteins, lacI family CH47_1934 PF02929 Beta galactosidase small chain CH47_1934 PF00703 Glycosyl hydrolases family 2 CH47_1934 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH47_1934 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH47_1934 PF16353 Domain of unknown function(DUF4981) CH47_1935 PF13006 Insertion element 4 transposase N-terminal CH47_1935 PF01609 Transposase DDE domain CH47_1936 PF01609 Transposase DDE domain CH47_1936 PF13006 Insertion element 4 transposase N-terminal CH47_1937 PF00698 Acyl transferase domain CH47_1937 PF08240 Alcohol dehydrogenase GroES-like domain CH47_1937 PF00107 Zinc-binding dehydrogenase CH47_1937 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_1937 PF14765 Polyketide synthase dehydratase CH47_1937 PF08659 KR domain CH47_1937 PF00550 Phosphopantetheine attachment site CH47_1937 PF16197 Ketoacyl-synthetase C-terminal extension CH47_1937 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_1938 PF10777 Inner membrane protein YlaC CH47_1941 PF14001 YdfZ protein CH47_1942 PF00328 Histidine phosphatase superfamily (branch 2) CH47_1943 PF00483 Nucleotidyl transferase CH47_1945 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_1947 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH47_1947 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_1948 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_1948 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_1949 PF00294 pfkB family carbohydrate kinase CH47_1950 PF02653 Branched-chain amino acid transport system / permease component CH47_1951 PF02653 Branched-chain amino acid transport system / permease component CH47_1952 PF00005 ABC transporter CH47_1954 PF06167 Glucose-regulated metallo-peptidase M90 CH47_1956 PF13356 Arm DNA-binding domain CH47_1956 PF00589 Phage integrase family CH47_1957 PF00589 Phage integrase family CH47_1957 PF13356 Arm DNA-binding domain CH47_1958 PF00425 chorismate binding enzyme CH47_1959 PF07690 Major Facilitator Superfamily CH47_196 PF00263 Bacterial type II and III secretion system protein CH47_196 PF03958 Bacterial type II/III secretion system short domain CH47_1960 PF00005 ABC transporter CH47_1960 PF00664 ABC transporter transmembrane region CH47_1961 PF04954 Siderophore-interacting protein CH47_1961 PF08021 Siderophore-interacting FAD-binding domain CH47_1961 PF00005 ABC transporter CH47_1961 PF00664 ABC transporter transmembrane region CH47_1963 PF00668 Condensation domain CH47_1963 PF08242 Methyltransferase domain CH47_1963 PF00501 AMP-binding enzyme CH47_1963 PF00550 Phosphopantetheine attachment site CH47_1964 PF16197 Ketoacyl-synthetase C-terminal extension CH47_1964 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_1964 PF00698 Acyl transferase domain CH47_1964 PF00550 Phosphopantetheine attachment site CH47_1964 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_1964 PF00668 Condensation domain CH47_1966 PF00975 Thioesterase domain CH47_1967 PF00501 AMP-binding enzyme CH47_1967 PF13193 AMP-binding enzyme C-terminal domain CH47_1968 PF07715 TonB-dependent Receptor Plug Domain CH47_1968 PF00593 TonB dependent receptor CH47_1969 PF02371 Transposase IS116/IS110/IS902 family CH47_1969 PF01548 Transposase CH47_1971 PF13276 HTH-like domain CH47_1971 PF00665 Integrase core domain CH47_1971 PF13333 Integrase core domain CH47_1972 PF01527 Transposase CH47_1973 PF13276 HTH-like domain CH47_1973 PF13683 Integrase core domain CH47_1975 PF13276 HTH-like domain CH47_1975 PF13683 Integrase core domain CH47_1976 PF01527 Transposase CH47_198 PF00482 Type II secretion system (T2SS), protein F CH47_1982 PF00849 RNA pseudouridylate synthase CH47_1983 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH47_1984 PF00381 PTS HPr component phosphorylation site CH47_1984 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_1985 PF00083 Sugar (and other) transporter CH47_1987 PF01648 4'-phosphopantetheinyl transferase superfamily CH47_1987 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH47_1988 PF03480 Bacterial extracellular solute-binding protein, family 7 CH47_199 PF07963 Prokaryotic N-terminal methylation motif CH47_199 PF08334 Type II secretion system (T2SS), protein G CH47_1990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH47_1991 PF00939 Sodium:sulfate symporter transmembrane region CH47_1992 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH47_1993 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH47_1994 PF04223 Citrate lyase, alpha subunit (CitF) CH47_1995 PF03328 HpcH/HpaI aldolase/citrate lyase family CH47_1996 PF06857 Malonate decarboxylase delta subunit (MdcD) CH47_1997 PF08218 Citrate lyase ligase C-terminal domain CH47_1998 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH47_1998 PF00989 PAS fold CH47_1998 PF17203 Single cache domain 3 CH47_1998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_1999 PF00072 Response regulator receiver domain CH47_1999 PF12431 Transcriptional regulator CH47_2 PF03916 Polysulphide reductase, NrfD CH47_20 PF02690 Na+/Pi-cotransporter CH47_200 PF07963 Prokaryotic N-terminal methylation motif CH47_200 PF02501 Type II secretion system (T2SS), protein I CH47_2000 PF00196 Bacterial regulatory proteins, luxR family CH47_2000 PF00072 Response regulator receiver domain CH47_2001 PF05231 MASE1 CH47_2001 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2001 PF07730 Histidine kinase CH47_2002 PF07690 Major Facilitator Superfamily CH47_2004 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2005 PF08402 TOBE domain CH47_2005 PF00005 ABC transporter CH47_2007 PF00196 Bacterial regulatory proteins, luxR family CH47_2007 PF00072 Response regulator receiver domain CH47_2008 PF00072 Response regulator receiver domain CH47_2008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2008 PF00512 His Kinase A (phospho-acceptor) domain CH47_2008 PF00989 PAS fold CH47_2008 PF01627 Hpt domain CH47_2008 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_2010 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_2010 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_2011 PF13954 PapC N-terminal domain CH47_2011 PF00577 Outer membrane usher protein CH47_2011 PF13953 PapC C-terminal domain CH47_2013 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_2013 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_2015 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH47_2015 PF02558 Ketopantoate reductase PanE/ApbA CH47_2017 PF00155 Aminotransferase class I and II CH47_2017 PF00392 Bacterial regulatory proteins, gntR family CH47_2018 PF00106 short chain dehydrogenase CH47_2020 PF01584 CheW-like domain CH47_2020 PF00072 Response regulator receiver domain CH47_2021 PF00144 Beta-lactamase CH47_2022 PF08220 DeoR-like helix-turn-helix domain CH47_2022 PF00455 DeoR C terminal sensor domain CH47_2024 PF02581 Thiamine monophosphate synthase CH47_2026 PF01554 MatE CH47_2027 PF00764 Arginosuccinate synthase CH47_2032 PF04717 Type VI secretion system, phage-baseplate injector CH47_2041 PF00577 Outer membrane usher protein CH47_2041 PF13953 PapC C-terminal domain CH47_2041 PF13954 PapC N-terminal domain CH47_2042 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_2042 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_2043 PF00419 Fimbrial protein CH47_2044 PF10431 C-terminal, D2-small domain, of ClpB protein CH47_2044 PF00004 ATPase family associated with various cellular activities (AAA) CH47_2044 PF07724 AAA domain (Cdc48 subfamily) CH47_2044 PF17871 AAA lid domain CH47_205 PF01478 Type IV leader peptidase family CH47_205 PF06750 Bacterial Peptidase A24 N-terminal domain CH47_2054 PF02277 Phosphoribosyltransferase CH47_2055 PF00300 Histidine phosphatase superfamily (branch 1) CH47_2056 PF02654 Cobalamin-5-phosphate synthase CH47_2057 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH47_2058 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH47_2059 PF00005 ABC transporter CH47_2060 PF02361 Cobalt transport protein CH47_2061 PF02553 Cobalt transport protein component CbiN CH47_2062 PF01891 Cobalt uptake substrate-specific transmembrane region CH47_2063 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2064 PF06180 Cobalt chelatase (CbiK) CH47_2065 PF02571 Precorrin-6x reductase CbiJ/CobK CH47_2066 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2067 PF01890 Cobalamin synthesis G C-terminus CH47_2067 PF11761 Cobalamin biosynthesis central region CH47_2067 PF11760 Cobalamin synthesis G N-terminal CH47_2068 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2069 PF05175 Methyltransferase small domain CH47_2070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2071 PF01888 CbiD CH47_2072 PF02570 Precorrin-8X methylmutase CH47_2073 PF03186 CobD/Cbib protein CH47_2074 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH47_2074 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH47_2075 PF10114 Sensory domain found in PocR CH47_2075 PF12833 Helix-turn-helix domain CH47_2076 PF00230 Major intrinsic protein CH47_2077 PF00936 BMC domain CH47_2078 PF00936 BMC domain CH47_2079 PF02286 Dehydratase large subunit CH47_208 PF02203 Tar ligand binding domain homologue CH47_208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_208 PF00672 HAMP domain CH47_2080 PF02288 Dehydratase medium subunit CH47_2081 PF02287 Dehydratase small subunit CH47_2082 PF18427 DD-reactivating factor swiveling domain CH47_2082 PF08841 Diol dehydratase reactivase ATPase-like domain CH47_2084 PF00936 BMC domain CH47_2086 PF06130 Phosphate propanoyltransferase CH47_2088 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH47_2089 PF01923 Cobalamin adenosyltransferase CH47_2090 PF00171 Aldehyde dehydrogenase family CH47_2091 PF00465 Iron-containing alcohol dehydrogenase CH47_2092 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH47_2092 PF13375 RnfC Barrel sandwich hybrid domain CH47_2092 PF13237 4Fe-4S dicluster domain CH47_2092 PF10531 SLBB domain CH47_2094 PF00936 BMC domain CH47_2095 PF10662 Ethanolamine utilisation - propanediol utilisation CH47_2096 PF00871 Acetokinase family CH47_2097 PF10414 Sirohaem synthase dimerisation region CH47_2097 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2097 PF14824 Sirohaem biosynthesis protein central CH47_2098 PF00155 Aminotransferase class I and II CH47_2099 PF00288 GHMP kinases N terminal domain CH47_21 PF01156 Inosine-uridine preferring nucleoside hydrolase CH47_2100 PF00196 Bacterial regulatory proteins, luxR family CH47_2100 PF03472 Autoinducer binding domain CH47_2102 PF13407 Periplasmic binding protein domain CH47_2104 PF02653 Branched-chain amino acid transport system / permease component CH47_2105 PF02653 Branched-chain amino acid transport system / permease component CH47_2106 PF04363 Protein of unknown function (DUF496) CH47_2107 PF04632 Fusaric acid resistance protein family CH47_2108 PF00501 AMP-binding enzyme CH47_2108 PF07993 Male sterility protein CH47_2108 PF00550 Phosphopantetheine attachment site CH47_2109 PF00929 Exonuclease CH47_2109 PF08411 Exonuclease C-terminal CH47_211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_211 PF03466 LysR substrate binding domain CH47_2110 PF13520 Amino acid permease CH47_2112 PF00465 Iron-containing alcohol dehydrogenase CH47_2113 PF00005 ABC transporter CH47_2114 PF02653 Branched-chain amino acid transport system / permease component CH47_2115 PF01370 NAD dependent epimerase/dehydratase family CH47_2116 PF08029 HisG, C-terminal domain CH47_2116 PF01634 ATP phosphoribosyltransferase CH47_2117 PF00815 Histidinol dehydrogenase CH47_2118 PF00155 Aminotransferase class I and II CH47_2119 PF00475 Imidazoleglycerol-phosphate dehydratase CH47_212 PF03466 LysR substrate binding domain CH47_212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2120 PF00117 Glutamine amidotransferase class-I CH47_2121 PF00977 Histidine biosynthesis protein CH47_2122 PF00977 Histidine biosynthesis protein CH47_2123 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH47_2123 PF01502 Phosphoribosyl-AMP cyclohydrolase CH47_2124 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH47_2124 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH47_2127 PF13006 Insertion element 4 transposase N-terminal CH47_2127 PF01609 Transposase DDE domain CH47_2128 PF00483 Nucleotidyl transferase CH47_2129 PF00483 Nucleotidyl transferase CH47_213 PF07690 Major Facilitator Superfamily CH47_2130 PF03741 Integral membrane protein TerC family CH47_2130 PF00571 CBS domain CH47_2130 PF03471 Transporter associated domain CH47_2131 PF03606 C4-dicarboxylate anaerobic carrier CH47_2132 PF05170 AsmA family CH47_2133 PF00692 dUTPase CH47_2134 PF00485 Phosphoribulokinase / Uridine kinase family CH47_2135 PF10609 NUBPL iron-transfer P-loop NTPase CH47_2136 PF01588 Putative tRNA binding domain CH47_2136 PF09334 tRNA synthetases class I (M) CH47_214 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH47_214 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH47_2140 PF07690 Major Facilitator Superfamily CH47_2141 PF03788 LrgA family CH47_2142 PF04172 LrgB-like family CH47_2143 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH47_2143 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH47_2145 PF03949 Malic enzyme, NAD binding domain CH47_2145 PF00390 Malic enzyme, N-terminal domain CH47_2146 PF02698 DUF218 domain CH47_2147 PF01455 HupF/HypC family CH47_2148 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH47_2149 PF12798 4Fe-4S binding domain CH47_2149 PF00037 4Fe-4S binding domain CH47_215 PF00356 Bacterial regulatory proteins, lacI family CH47_2150 PF00361 Proton-conducting membrane transporter CH47_2151 PF00146 NADH dehydrogenase CH47_2152 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH47_2152 PF00361 Proton-conducting membrane transporter CH47_2153 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH47_2154 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH47_2154 PF00361 Proton-conducting membrane transporter CH47_2155 PF00374 Nickel-dependent hydrogenase CH47_2155 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH47_2155 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH47_2156 PF12838 4Fe-4S dicluster domain CH47_2157 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH47_2158 PF07450 Formate hydrogenlyase maturation protein HycH CH47_2159 PF01750 Hydrogenase maturation protease CH47_216 PF00384 Molybdopterin oxidoreductase CH47_216 PF01568 Molydopterin dinucleotide binding domain CH47_2160 PF13247 4Fe-4S dicluster domain CH47_2160 PF12800 4Fe-4S binding domain CH47_2161 PF01568 Molydopterin dinucleotide binding domain CH47_2161 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_2161 PF00384 Molybdopterin oxidoreductase CH47_2162 PF01590 GAF domain CH47_2162 PF00158 Sigma-54 interaction domain CH47_2163 PF01226 Formate/nitrite transporter CH47_2164 PF02653 Branched-chain amino acid transport system / permease component CH47_2165 PF00005 ABC transporter CH47_2166 PF13407 Periplasmic binding protein domain CH47_2167 PF00356 Bacterial regulatory proteins, lacI family CH47_2168 PF04235 Protein of unknown function (DUF418) CH47_2169 PF01227 GTP cyclohydrolase I CH47_217 PF01553 Acyltransferase CH47_217 PF13193 AMP-binding enzyme C-terminal domain CH47_217 PF00501 AMP-binding enzyme CH47_2170 PF06779 Uncharacterised MFS-type transporter YbfB CH47_2171 PF03466 LysR substrate binding domain CH47_2171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2172 PF08240 Alcohol dehydrogenase GroES-like domain CH47_2172 PF00107 Zinc-binding dehydrogenase CH47_2173 PF00756 Putative esterase CH47_2174 PF01548 Transposase CH47_2174 PF02371 Transposase IS116/IS110/IS902 family CH47_2178 PF02687 FtsX-like permease family CH47_2178 PF12704 MacB-like periplasmic core domain CH47_2178 PF00005 ABC transporter CH47_218 PF07690 Major Facilitator Superfamily CH47_2181 PF03453 MoeA N-terminal region (domain I and II) CH47_2181 PF03454 MoeA C-terminal region (domain IV) CH47_2181 PF00994 Probable molybdopterin binding domain CH47_2182 PF00899 ThiF family CH47_2183 PF18416 N-acetylglucosamine binding protein domain 2 CH47_2183 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CH47_2184 PF00005 ABC transporter CH47_2184 PF12848 ABC transporter CH47_2188 PF13505 Outer membrane protein beta-barrel domain CH47_2189 PF00892 EamA-like transporter family CH47_219 PF00248 Aldo/keto reductase family CH47_2191 PF02469 Fasciclin domain CH47_2194 PF13847 Methyltransferase domain CH47_2195 PF00210 Ferritin-like domain CH47_2196 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH47_2197 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_2198 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2199 PF00005 ABC transporter CH47_22 PF00356 Bacterial regulatory proteins, lacI family CH47_220 PF03741 Integral membrane protein TerC family CH47_2200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_2200 PF08447 PAS fold CH47_2200 PF13426 PAS domain CH47_2201 PF05971 RNA methyltransferase CH47_2204 PF07338 Protein of unknown function (DUF1471) CH47_2206 PF02885 Glycosyl transferase family, helical bundle domain CH47_2207 PF00230 Major intrinsic protein CH47_2208 PF06733 DEAD_2 CH47_2208 PF13307 Helicase C-terminal domain CH47_2209 PF00267 Gram-negative porin CH47_221 PF02976 DNA mismatch repair enzyme MutH CH47_2211 PF00892 EamA-like transporter family CH47_2212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2212 PF03466 LysR substrate binding domain CH47_2215 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2216 PF00005 ABC transporter CH47_2217 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2218 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH47_222 PF00293 NUDIX domain CH47_2220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH47_2220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH47_2221 PF00581 Rhodanese-like domain CH47_2222 PF00005 ABC transporter CH47_2223 PF00005 ABC transporter CH47_2224 PF02653 Branched-chain amino acid transport system / permease component CH47_2225 PF02653 Branched-chain amino acid transport system / permease component CH47_2226 PF13458 Periplasmic binding protein CH47_2227 PF07308 Protein of unknown function (DUF1456) CH47_2228 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2229 PF00528 Binding-protein-dependent transport system inner membrane component CH47_223 PF00391 PEP-utilising enzyme, mobile domain CH47_223 PF01590 GAF domain CH47_223 PF02896 PEP-utilising enzyme, TIM barrel domain CH47_223 PF05524 PEP-utilising enzyme, N-terminal CH47_2231 PF00005 ABC transporter CH47_2232 PF04226 Transglycosylase associated protein CH47_2234 PF01844 HNH endonuclease CH47_2235 PF01928 CYTH domain CH47_2236 PF09330 D-lactate dehydrogenase, membrane binding CH47_2236 PF01565 FAD binding domain CH47_2237 PF00768 D-alanyl-D-alanine carboxypeptidase CH47_224 PF01790 Prolipoprotein diacylglyceryl transferase CH47_2240 PF01207 Dihydrouridine synthase (Dus) CH47_2243 PF00271 Helicase conserved C-terminal domain CH47_2243 PF00270 DEAD/DEAH box helicase CH47_2244 PF09209 Tetracyclin repressor-like, C-terminal domain CH47_2244 PF00440 Bacterial regulatory proteins, tetR family CH47_2245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_2246 PF00005 ABC transporter CH47_2249 PF01027 Inhibitor of apoptosis-promoting Bax1 CH47_225 PF00303 Thymidylate synthase CH47_2250 PF02391 MoaE protein CH47_2251 PF02597 ThiS family CH47_2252 PF01967 MoaC family CH47_2253 PF04055 Radical SAM superfamily CH47_2253 PF06463 Molybdenum Cofactor Synthesis C CH47_2254 PF01933 Uncharacterised protein family UPF0052 CH47_2255 PF09905 DNA-binding protein VF530 CH47_2256 PF02151 UvrB/uvrC motif CH47_2256 PF00271 Helicase conserved C-terminal domain CH47_2256 PF04851 Type III restriction enzyme, res subunit CH47_2256 PF12344 Ultra-violet resistance protein B CH47_2256 PF17757 UvrB interaction domain CH47_2257 PF00005 ABC transporter CH47_2259 PF08241 Methyltransferase domain CH47_2260 PF00155 Aminotransferase class I and II CH47_2261 PF04055 Radical SAM superfamily CH47_2261 PF06968 Biotin and Thiamin Synthesis associated domain CH47_2262 PF00202 Aminotransferase class-III CH47_2263 PF10282 Lactonase, 7-bladed beta-propeller CH47_2265 PF00005 ABC transporter CH47_2265 PF03459 TOBE domain CH47_2266 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2268 PF10766 Multidrug efflux pump-associated protein AcrZ CH47_2269 PF03459 TOBE domain CH47_2269 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2270 PF00005 ABC transporter CH47_2272 PF16363 GDP-mannose 4,6 dehydratase CH47_2273 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH47_2273 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH47_2274 PF00288 GHMP kinases N terminal domain CH47_2274 PF08544 GHMP kinases C terminal CH47_2274 PF10509 Galactokinase galactose-binding signature CH47_2275 PF01263 Aldose 1-epimerase CH47_2279 PF01223 DNA/RNA non-specific endonuclease CH47_2280 PF00300 Histidine phosphatase superfamily (branch 1) CH47_2281 PF00793 DAHP synthetase I family CH47_2282 PF01545 Cation efflux family CH47_2283 PF04973 Nicotinamide mononucleotide transporter CH47_2284 PF02445 Quinolinate synthetase A protein CH47_2289 PF16331 TolA binding protein trimerisation CH47_2289 PF13174 Tetratricopeptide repeat CH47_2290 PF00691 OmpA family CH47_2291 PF04052 TolB amino-terminal domain CH47_2291 PF07676 WD40-like Beta Propeller Repeat CH47_2292 PF06519 TolA C-terminal CH47_2292 PF06519 TolA C-terminal CH47_2293 PF02472 Biopolymer transport protein ExbD/TolR CH47_2294 PF01618 MotA/TolQ/ExbB proton channel family CH47_2295 PF03061 Thioesterase superfamily CH47_2296 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH47_2297 PF08173 Membrane bound YbgT-like protein CH47_2298 PF02322 Cytochrome bd terminal oxidase subunit II CH47_2299 PF01654 Cytochrome bd terminal oxidase subunit I CH47_23 PF07690 Major Facilitator Superfamily CH47_23 PF00083 Sugar (and other) transporter CH47_230 PF17946 RecC C-terminal domain CH47_2300 PF02872 5'-nucleotidase, C-terminal domain CH47_2300 PF00149 Calcineurin-like phosphoesterase CH47_2301 PF00549 CoA-ligase CH47_2301 PF02629 CoA binding domain CH47_2302 PF08442 ATP-grasp domain CH47_2302 PF00549 CoA-ligase CH47_2303 PF00364 Biotin-requiring enzyme CH47_2303 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH47_2303 PF02817 e3 binding domain CH47_2304 PF16078 2-oxoglutarate dehydrogenase N-terminus CH47_2304 PF00676 Dehydrogenase E1 component CH47_2304 PF16870 2-oxoglutarate dehydrogenase C-terminal CH47_2304 PF02779 Transketolase, pyrimidine binding domain CH47_2305 PF13085 2Fe-2S iron-sulfur cluster binding domain CH47_2306 PF00890 FAD binding domain CH47_2306 PF02910 Fumarate reductase flavoprotein C-term CH47_2307 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH47_2308 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH47_2309 PF00285 Citrate synthase, C-terminal domain CH47_231 PF16187 Middle or third domain of peptidase_M16 CH47_231 PF00675 Insulinase (Peptidase family M16) CH47_231 PF05193 Peptidase M16 inactive domain CH47_2310 PF01470 Pyroglutamyl peptidase CH47_2313 PF03746 LamB/YcsF family CH47_2314 PF02626 Carboxyltransferase domain, subdomain A and B CH47_2315 PF02682 Carboxyltransferase domain, subdomain C and D CH47_2316 PF01784 NIF3 (NGG1p interacting factor 3) CH47_2317 PF02112 cAMP phosphodiesterases class-II CH47_2318 PF03441 FAD binding domain of DNA photolyase CH47_2318 PF00875 DNA photolyase CH47_2319 PF08349 Protein of unknown function (DUF1722) CH47_232 PF12705 PD-(D/E)XK nuclease superfamily CH47_232 PF13361 UvrD-like helicase C-terminal domain CH47_232 PF00580 UvrD/REP helicase N-terminal domain CH47_2320 PF10725 Protein of unknown function (DUF2517) CH47_2321 PF03814 Potassium-transporting ATPase A subunit CH47_2323 PF02669 K+-transporting ATPase, c chain CH47_2324 PF02702 Osmosensitive K+ channel His kinase sensor domain CH47_2324 PF00512 His Kinase A (phospho-acceptor) domain CH47_2324 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2324 PF13492 GAF domain CH47_2324 PF13493 Domain of unknown function (DUF4118) CH47_2325 PF00072 Response regulator receiver domain CH47_2325 PF00486 Transcriptional regulatory protein, C terminal CH47_2328 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH47_2328 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH47_2328 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH47_2328 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH47_2329 PF03925 SeqA protein C-terminal domain CH47_2329 PF17206 SeqA protein N-terminal domain CH47_233 PF13538 UvrD-like helicase C-terminal domain CH47_2330 PF12697 Alpha/beta hydrolase family CH47_2332 PF01402 Ribbon-helix-helix protein, copG family CH47_2333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_2333 PF02203 Tar ligand binding domain homologue CH47_2333 PF00672 HAMP domain CH47_2334 PF00258 Flavodoxin CH47_2335 PF01475 Ferric uptake regulator family CH47_2336 PF02838 Glycosyl hydrolase family 20, domain 2 CH47_2336 PF03173 Putative carbohydrate binding domain CH47_2336 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH47_2336 PF00728 Glycosyl hydrolase family 20, catalytic domain CH47_2337 PF13982 YbfN-like lipoprotein CH47_2338 PF03573 outer membrane porin, OprD family CH47_2339 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH47_2339 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH47_234 PF00696 Amino acid kinase family CH47_234 PF00583 Acetyltransferase (GNAT) family CH47_2340 PF02378 Phosphotransferase system, EIIC CH47_2340 PF00367 phosphotransferase system, EIIB CH47_2340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH47_2341 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH47_2342 PF01979 Amidohydrolase family CH47_2343 PF00480 ROK family CH47_2343 PF01047 MarR family CH47_2344 PF13344 Haloacid dehalogenase-like hydrolase CH47_2345 PF13537 Glutamine amidotransferase domain CH47_2345 PF00733 Asparagine synthase CH47_235 PF11741 AMIN domain CH47_235 PF01520 N-acetylmuramoyl-L-alanine amidase CH47_2352 PF01494 FAD binding domain CH47_2353 PF04055 Radical SAM superfamily CH47_2353 PF00919 Uncharacterized protein family UPF0004 CH47_2353 PF01938 TRAM domain CH47_2354 PF02562 PhoH-like protein CH47_2355 PF02130 Uncharacterized protein family UPF0054 CH47_2356 PF00571 CBS domain CH47_2356 PF03471 Transporter associated domain CH47_2357 PF00795 Carbon-nitrogen hydrolase CH47_2359 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_2360 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2361 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2362 PF00005 ABC transporter CH47_2363 PF07295 Zinc-ribbon containing domain CH47_2364 PF13603 Leucyl-tRNA synthetase, Domain 2 CH47_2364 PF08264 Anticodon-binding domain of tRNA CH47_2364 PF00133 tRNA synthetases class I (I, L, M and V) CH47_2365 PF04390 Lipopolysaccharide-assembly CH47_2366 PF06144 DNA polymerase III, delta subunit CH47_2366 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH47_2367 PF01467 Cytidylyltransferase-like CH47_2369 PF02590 Predicted SPOUT methyltransferase CH47_2370 PF03717 Penicillin-binding Protein dimerisation domain CH47_2370 PF00905 Penicillin binding protein transpeptidase domain CH47_2371 PF01098 Cell cycle protein CH47_2372 PF05036 Sporulation related domain CH47_2372 PF03330 Lytic transglycolase CH47_2373 PF07943 Penicillin-binding protein 5, C-terminal domain CH47_2373 PF00768 D-alanyl-D-alanine carboxypeptidase CH47_2374 PF04359 Protein of unknown function (DUF493) CH47_2375 PF03099 Biotin/lipoate A/B protein ligase family CH47_2376 PF04055 Radical SAM superfamily CH47_2376 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH47_2377 PF02416 mttA/Hcf106 family CH47_2378 PF05230 MASE2 domain CH47_2378 PF00990 Diguanylate cyclase, GGDEF domain CH47_2379 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH47_2380 PF00313 'Cold-shock' DNA-binding domain CH47_2381 PF00313 'Cold-shock' DNA-binding domain CH47_2382 PF00196 Bacterial regulatory proteins, luxR family CH47_2384 PF00149 Calcineurin-like phosphoesterase CH47_2387 PF00005 ABC transporter CH47_2387 PF00664 ABC transporter transmembrane region CH47_2389 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH47_2390 PF00221 Aromatic amino acid lyase CH47_2391 PF08007 Cupin superfamily protein CH47_2392 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CH47_2393 PF00072 Response regulator receiver domain CH47_2393 PF00486 Transcriptional regulatory protein, C terminal CH47_2394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2394 PF00672 HAMP domain CH47_2394 PF00512 His Kinase A (phospho-acceptor) domain CH47_2398 PF00248 Aldo/keto reductase family CH47_240 PF03562 MltA specific insert domain CH47_240 PF06725 3D domain CH47_2400 PF03466 LysR substrate binding domain CH47_2400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2401 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH47_2406 PF01527 Transposase CH47_2407 PF00665 Integrase core domain CH47_2407 PF13333 Integrase core domain CH47_2407 PF13276 HTH-like domain CH47_241 PF00899 ThiF family CH47_2410 PF07484 Phage Tail Collar Domain CH47_2410 PF03335 Phage tail fibre repeat CH47_2410 PF08400 Prophage tail fibre N-terminal CH47_2411 PF00535 Glycosyl transferase family 2 CH47_2412 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH47_2413 PF03335 Phage tail fibre repeat CH47_2413 PF07484 Phage Tail Collar Domain CH47_2416 PF02371 Transposase IS116/IS110/IS902 family CH47_2416 PF01548 Transposase CH47_242 PF02657 Fe-S metabolism associated domain CH47_2420 PF00589 Phage integrase family CH47_2422 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH47_2422 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH47_2424 PF09190 DALR domain CH47_2424 PF01406 tRNA synthetases class I (C) catalytic domain CH47_2425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH47_2426 PF00149 Calcineurin-like phosphoesterase CH47_2427 PF00731 AIR carboxylase CH47_2428 PF02222 ATP-grasp domain CH47_2428 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH47_243 PF00266 Aminotransferase class-V CH47_2430 PF00005 ABC transporter CH47_2431 PF13472 GDSL-like Lipase/Acylhydrolase family CH47_2432 PF00106 short chain dehydrogenase CH47_2433 PF00085 Thioredoxin CH47_2434 PF01145 SPFH domain / Band 7 family CH47_2434 PF16200 C-terminal region of band_7 CH47_2435 PF01957 NfeD-like C-terminal, partner-binding CH47_2436 PF13411 MerR HTH family regulatory protein CH47_2437 PF00403 Heavy-metal-associated domain CH47_2438 PF01963 TraB family CH47_2439 PF04073 Aminoacyl-tRNA editing domain CH47_244 PF06004 Bacterial protein of unknown function (DUF903) CH47_2441 PF00149 Calcineurin-like phosphoesterase CH47_2441 PF02872 5'-nucleotidase, C-terminal domain CH47_2442 PF07690 Major Facilitator Superfamily CH47_2443 PF02254 TrkA-N domain CH47_2443 PF00999 Sodium/hydrogen exchanger family CH47_2444 PF00294 pfkB family carbohydrate kinase CH47_2446 PF16363 GDP-mannose 4,6 dehydratase CH47_2447 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH47_2447 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH47_2447 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH47_2447 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH47_2448 PF01050 Mannose-6-phosphate isomerase CH47_2448 PF00483 Nucleotidyl transferase CH47_2449 PF01370 NAD dependent epimerase/dehydratase family CH47_245 PF03466 LysR substrate binding domain CH47_245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2450 PF16363 GDP-mannose 4,6 dehydratase CH47_2451 PF00534 Glycosyl transferases group 1 CH47_2451 PF13439 Glycosyltransferase Family 4 CH47_2453 PF00535 Glycosyl transferase family 2 CH47_2456 PF00535 Glycosyl transferase family 2 CH47_2458 PF00535 Glycosyl transferase family 2 CH47_2459 PF01370 NAD dependent epimerase/dehydratase family CH47_246 PF04241 Protein of unknown function (DUF423) CH47_2460 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CH47_2461 PF16363 GDP-mannose 4,6 dehydratase CH47_2462 PF00483 Nucleotidyl transferase CH47_2463 PF00762 Ferrochelatase CH47_2464 PF05191 Adenylate kinase, active site lid CH47_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2465 PF00183 Hsp90 protein CH47_2466 PF13662 Toprim domain CH47_2466 PF02132 RecR protein CH47_2467 PF02575 YbaB/EbfC DNA-binding family CH47_2468 PF12169 DNA polymerase III subunits gamma and tau domain III CH47_2468 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH47_2468 PF12170 DNA polymerase III tau subunit V interacting with alpha CH47_2469 PF00156 Phosphoribosyl transferase domain CH47_247 PF18125 RlmM ferredoxin-like domain CH47_247 PF01728 FtsJ-like methyltransferase CH47_2470 PF04304 Protein of unknown function (DUF454) CH47_2472 PF12795 Mechanosensitive ion channel porin domain CH47_2472 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH47_2472 PF00924 Mechanosensitive ion channel CH47_2473 PF02635 DsrE/DsrF-like family CH47_2474 PF00440 Bacterial regulatory proteins, tetR family CH47_2474 PF08361 MAATS-type transcriptional repressor, C-terminal region CH47_2475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_2475 PF00529 HlyD membrane-fusion protein of T1SS CH47_2476 PF00873 AcrB/AcrD/AcrF family CH47_2478 PF01168 Alanine racemase, N-terminal domain CH47_2479 PF01676 Metalloenzyme superfamily CH47_248 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH47_248 PF01367 5'-3' exonuclease, C-terminal SAM fold CH47_2480 PF10941 Protein of unknown function DUF2620 CH47_2481 PF10797 Protein of unknown function CH47_2482 PF01197 Ribosomal protein L31 CH47_2483 PF00444 Ribosomal protein L36 CH47_2484 PF01297 Zinc-uptake complex component A periplasmic CH47_2485 PF00950 ABC 3 transport family CH47_2486 PF00005 ABC transporter CH47_2489 PF10757 Biofilm formation regulator YbaJ CH47_249 PF03641 Possible lysine decarboxylase CH47_249 PF11892 Domain of unknown function (DUF3412) CH47_249 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH47_2490 PF05321 Haemolysin expression modulating protein CH47_2491 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH47_2492 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH47_2494 PF00909 Ammonium Transporter Family CH47_2495 PF00543 Nitrogen regulatory protein P-II CH47_2496 PF00664 ABC transporter transmembrane region CH47_2496 PF00005 ABC transporter CH47_2497 PF00005 ABC transporter CH47_2497 PF00664 ABC transporter transmembrane region CH47_2498 PF01037 Lrp/AsnC ligand binding domain CH47_2498 PF13404 AsnC-type helix-turn-helix domain CH47_25 PF01497 Periplasmic binding protein CH47_250 PF14489 QueF-like protein CH47_250 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH47_2501 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_2501 PF12793 Sugar transport-related sRNA regulator N-term CH47_2502 PF06508 Queuosine biosynthesis protein QueC CH47_2505 PF13145 PPIC-type PPIASE domain CH47_2507 PF00216 Bacterial DNA-binding protein CH47_2508 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH47_2508 PF00004 ATPase family associated with various cellular activities (AAA) CH47_2508 PF05362 Lon protease (S16) C-terminal proteolytic domain CH47_2509 PF07724 AAA domain (Cdc48 subfamily) CH47_2509 PF10431 C-terminal, D2-small domain, of ClpB protein CH47_2509 PF06689 ClpX C4-type zinc finger CH47_251 PF07348 Syd protein (SUKH-2) CH47_2510 PF00574 Clp protease CH47_2511 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH47_2511 PF05698 Bacterial trigger factor protein (TF) C-terminus CH47_2511 PF05697 Bacterial trigger factor protein (TF) CH47_2512 PF01722 BolA-like protein CH47_2513 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH47_2513 PF03923 Uncharacterized lipoprotein CH47_2514 PF07690 Major Facilitator Superfamily CH47_2515 PF03502 Nucleoside-specific channel-forming protein, Tsx CH47_2516 PF06481 COX Aromatic Rich Motif CH47_2516 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH47_2517 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH47_2518 PF00510 Cytochrome c oxidase subunit III CH47_2519 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH47_252 PF04287 tRNA pseudouridine synthase C CH47_2520 PF01040 UbiA prenyltransferase family CH47_2521 PF07690 Major Facilitator Superfamily CH47_2522 PF04461 Protein of unknown function (DUF520) CH47_2523 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH47_2523 PF02558 Ketopantoate reductase PanE/ApbA CH47_2524 PF01965 DJ-1/PfpI family CH47_2525 PF02926 THUMP domain CH47_2525 PF02568 Thiamine biosynthesis protein (ThiI) CH47_2526 PF02609 Exonuclease VII small subunit CH47_2527 PF00348 Polyprenyl synthetase CH47_2528 PF02779 Transketolase, pyrimidine binding domain CH47_2528 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH47_2528 PF02780 Transketolase, C-terminal domain CH47_2529 PF04608 Phosphatidylglycerophosphatase A CH47_253 PF00849 RNA pseudouridylate synthase CH47_2530 PF00586 AIR synthase related protein, N-terminal domain CH47_2530 PF02769 AIR synthase related protein, C-terminal domain CH47_2531 PF01029 NusB family CH47_2532 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH47_2533 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH47_2533 PF01872 RibD C-terminal domain CH47_2534 PF03477 ATP cone domain CH47_2535 PF07549 SecD/SecF GG Motif CH47_2535 PF02355 Protein export membrane protein CH47_2536 PF13721 SecD export protein N-terminal TM region CH47_2536 PF07549 SecD/SecF GG Motif CH47_2536 PF02355 Protein export membrane protein CH47_2537 PF02699 Preprotein translocase subunit CH47_2538 PF01702 Queuine tRNA-ribosyltransferase CH47_254 PF00258 Flavodoxin CH47_2540 PF02547 Queuosine biosynthesis protein CH47_2541 PF04336 Acyl carrier protein phosphodiesterase CH47_2542 PF00578 AhpC/TSA family CH47_2542 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH47_2545 PF02903 Alpha amylase, N-terminal ig-like domain CH47_2545 PF00128 Alpha amylase, catalytic domain CH47_2546 PF00324 Amino acid permease CH47_2547 PF05525 Branched-chain amino acid transport protein CH47_2548 PF12849 PBP superfamily domain CH47_2549 PF11808 Phosphate regulon sensor protein PhoR CH47_2549 PF00989 PAS fold CH47_2549 PF00512 His Kinase A (phospho-acceptor) domain CH47_2549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_255 PF11944 Protein of unknown function (DUF3461) CH47_2550 PF00072 Response regulator receiver domain CH47_2550 PF00486 Transcriptional regulatory protein, C terminal CH47_2551 PF12320 Type 5 capsule protein repressor C-terminal domain CH47_2551 PF00149 Calcineurin-like phosphoesterase CH47_2552 PF13476 AAA domain CH47_2553 PF00480 ROK family CH47_2554 PF04381 Putative exonuclease, RdgC CH47_2555 PF06865 Pyrimidine/purine nucleoside phosphorylase CH47_2556 PF01202 Shikimate kinase CH47_2557 PF07715 TonB-dependent Receptor Plug Domain CH47_2557 PF00593 TonB dependent receptor CH47_256 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_256 PF14602 Hexapeptide repeat of succinyl-transferase CH47_256 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH47_2561 PF08241 Methyltransferase domain CH47_2564 PF10091 Putative glucoamylase CH47_2564 PF06165 Glycosyltransferase family 36 CH47_2564 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH47_2565 PF07317 Flagellar regulator YcgR CH47_2565 PF07238 PilZ domain CH47_2567 PF02056 Family 4 glycosyl hydrolase CH47_2567 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH47_2568 PF02378 Phosphotransferase system, EIIC CH47_2568 PF00367 phosphotransferase system, EIIB CH47_2569 PF00392 Bacterial regulatory proteins, gntR family CH47_2569 PF07702 UTRA domain CH47_257 PF01966 HD domain CH47_257 PF08335 GlnD PII-uridylyltransferase CH47_257 PF01909 Nucleotidyltransferase domain CH47_257 PF01842 ACT domain CH47_2570 PF00171 Aldehyde dehydrogenase family CH47_2571 PF01472 PUA domain CH47_2571 PF00696 Amino acid kinase family CH47_2572 PF07417 Sigma factor-binding transcriptional regulator Crl CH47_2574 PF00156 Phosphoribosyl transferase domain CH47_2575 PF07687 Peptidase dimerisation domain CH47_2575 PF01546 Peptidase family M20/M25/M40 CH47_2576 PF11799 impB/mucB/samB family C-terminal domain CH47_2576 PF00817 impB/mucB/samB family CH47_2576 PF11798 IMS family HHH motif CH47_2578 PF00291 Pyridoxal-phosphate dependent enzyme CH47_2579 PF13309 HTH domain CH47_2579 PF08348 YheO-like PAS domain CH47_258 PF00557 Metallopeptidase family M24 CH47_2580 PF07478 D-ala D-ala ligase C-terminus CH47_2580 PF01820 D-ala D-ala ligase N-terminus CH47_2581 PF03009 Glycerophosphoryl diester phosphodiesterase family CH47_2582 PF04400 (Na+)-NQR maturation NqrM CH47_2583 PF02424 ApbE family CH47_2584 PF00175 Oxidoreductase NAD-binding domain CH47_2584 PF00111 2Fe-2S iron-sulfur cluster binding domain CH47_2584 PF00970 Oxidoreductase FAD-binding domain CH47_2585 PF02508 Rnf-Nqr subunit, membrane protein CH47_2586 PF02508 Rnf-Nqr subunit, membrane protein CH47_2587 PF04205 FMN-binding domain CH47_2588 PF03116 NQR2, RnfD, RnfE family CH47_2589 PF11973 NQRA C-terminal domain CH47_2589 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH47_259 PF00318 Ribosomal protein S2 CH47_2590 PF13230 Glutamine amidotransferases class-II CH47_2591 PF03734 L,D-transpeptidase catalytic domain CH47_2592 PF13580 SIS domain CH47_2593 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH47_2593 PF09317 Domain of unknown function (DUF1974) CH47_2593 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH47_2594 PF18071 HMW1C N-terminal CH47_2594 PF18254 HMW1 domain 2 CH47_2595 PF05860 haemagglutination activity domain CH47_2596 PF08479 POTRA domain, ShlB-type CH47_2596 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH47_2597 PF01636 Phosphotransferase enzyme family CH47_2598 PF01008 Initiation factor 2 subunit family CH47_2599 PF03079 ARD/ARD' family CH47_26 PF01032 FecCD transport family CH47_260 PF00889 Elongation factor TS CH47_2601 PF00596 Class II Aldolase and Adducin N-terminal domain CH47_2602 PF00155 Aminotransferase class I and II CH47_2603 PF00795 Carbon-nitrogen hydrolase CH47_2604 PF07690 Major Facilitator Superfamily CH47_2605 PF03591 AzlC protein CH47_2606 PF05437 Branched-chain amino acid transport protein (AzlD) CH47_2607 PF01047 MarR family CH47_2608 PF02321 Outer membrane efflux protein CH47_2609 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_2609 PF00529 HlyD membrane-fusion protein of T1SS CH47_261 PF00696 Amino acid kinase family CH47_2610 PF07690 Major Facilitator Superfamily CH47_2611 PF13333 Integrase core domain CH47_2611 PF00665 Integrase core domain CH47_2611 PF13276 HTH-like domain CH47_2613 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH47_2613 PF00588 SpoU rRNA Methylase family CH47_2614 PF00085 Thioredoxin CH47_2616 PF00583 Acetyltransferase (GNAT) family CH47_2616 PF13380 CoA binding domain CH47_2616 PF13607 Succinyl-CoA ligase like flavodoxin domain CH47_2617 PF13091 PLD-like domain CH47_262 PF01765 Ribosome recycling factor CH47_2620 PF13276 HTH-like domain CH47_2620 PF00665 Integrase core domain CH47_2620 PF13333 Integrase core domain CH47_2621 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH47_2622 PF13006 Insertion element 4 transposase N-terminal CH47_2622 PF01609 Transposase DDE domain CH47_2628 PF07724 AAA domain (Cdc48 subfamily) CH47_2628 PF17871 AAA lid domain CH47_2628 PF02861 Clp amino terminal domain, pathogenicity island component CH47_2628 PF10431 C-terminal, D2-small domain, of ClpB protein CH47_2628 PF00004 ATPase family associated with various cellular activities (AAA) CH47_263 PF13288 DXP reductoisomerase C-terminal domain CH47_263 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH47_263 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH47_2630 PF01479 S4 domain CH47_2630 PF00849 RNA pseudouridylate synthase CH47_2631 PF13525 Outer membrane lipoprotein CH47_2632 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH47_2633 PF01817 Chorismate mutase type II CH47_2633 PF00800 Prephenate dehydratase CH47_2634 PF02153 Prephenate dehydrogenase CH47_2634 PF01817 Chorismate mutase type II CH47_2635 PF00793 DAHP synthetase I family CH47_2636 PF00072 Response regulator receiver domain CH47_2636 PF04397 LytTr DNA-binding domain CH47_2637 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH47_2638 PF04338 Protein of unknown function, DUF481 CH47_2639 PF01245 Ribosomal protein L19 CH47_264 PF01255 Putative undecaprenyl diphosphate synthase CH47_2640 PF01746 tRNA (Guanine-1)-methyltransferase CH47_2641 PF01782 RimM N-terminal domain CH47_2641 PF05239 PRC-barrel domain CH47_2642 PF00886 Ribosomal protein S16 CH47_2643 PF02978 Signal peptide binding domain CH47_2643 PF00448 SRP54-type protein, GTPase domain CH47_2643 PF02881 SRP54-type protein, helical bundle domain CH47_2644 PF01578 Cytochrome C assembly protein CH47_2645 PF01595 Cyclin M transmembrane N-terminal domain CH47_2645 PF03471 Transporter associated domain CH47_2645 PF00571 CBS domain CH47_2646 PF02664 S-Ribosylhomocysteinase (LuxS) CH47_2647 PF04262 Glutamate-cysteine ligase CH47_2648 PF09335 SNARE associated Golgi protein CH47_2649 PF13419 Haloacid dehalogenase-like hydrolase CH47_2654 PF02599 Global regulator protein family CH47_2655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH47_2655 PF02272 DHHA1 domain CH47_2655 PF01411 tRNA synthetases class II (A) CH47_2656 PF02631 RecX family CH47_2657 PF00154 recA bacterial DNA recombination protein CH47_2658 PF02464 Competence-damaged protein CH47_2659 PF07690 Major Facilitator Superfamily CH47_266 PF17820 PDZ domain CH47_266 PF02163 Peptidase family M50 CH47_2662 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH47_2662 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_2663 PF02780 Transketolase, C-terminal domain CH47_2663 PF02779 Transketolase, pyrimidine binding domain CH47_2664 PF00456 Transketolase, thiamine diphosphate binding domain CH47_2665 PF02653 Branched-chain amino acid transport system / permease component CH47_2666 PF00005 ABC transporter CH47_267 PF07244 Surface antigen variable number repeat CH47_267 PF01103 Surface antigen CH47_2671 PF05683 Fumarase C-terminus CH47_2671 PF05681 Fumarate hydratase (Fumerase) CH47_2672 PF13936 Helix-turn-helix domain CH47_2672 PF04198 Putative sugar-binding domain CH47_2673 PF03610 PTS system fructose IIA component CH47_2674 PF03830 PTS system sorbose subfamily IIB component CH47_2675 PF03609 PTS system sorbose-specific iic component CH47_2676 PF03613 PTS system mannose/fructose/sorbose family IID component CH47_2677 PF00107 Zinc-binding dehydrogenase CH47_2677 PF08240 Alcohol dehydrogenase GroES-like domain CH47_2678 PF01022 Bacterial regulatory protein, arsR family CH47_2679 PF03144 Elongation factor Tu domain 2 CH47_2679 PF00009 Elongation factor Tu GTP binding domain CH47_2679 PF03764 Elongation factor G, domain IV CH47_2679 PF14492 Elongation Factor G, domain II CH47_2679 PF00679 Elongation factor G C-terminus CH47_268 PF03938 Outer membrane protein (OmpH-like) CH47_2681 PF09347 Domain of unknown function (DUF1989) CH47_2682 PF01546 Peptidase family M20/M25/M40 CH47_2683 PF00005 ABC transporter CH47_2684 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2687 PF00291 Pyridoxal-phosphate dependent enzyme CH47_2689 PF00155 Aminotransferase class I and II CH47_269 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH47_269 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_2693 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_2693 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_2694 PF02321 Outer membrane efflux protein CH47_2695 PF12704 MacB-like periplasmic core domain CH47_2695 PF02687 FtsX-like permease family CH47_2695 PF00005 ABC transporter CH47_2696 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_2697 PF00664 ABC transporter transmembrane region CH47_2697 PF03412 Peptidase C39 family CH47_2697 PF00005 ABC transporter CH47_27 PF01032 FecCD transport family CH47_270 PF07977 FabA-like domain CH47_2702 PF00419 Fimbrial protein CH47_2703 PF00419 Fimbrial protein CH47_2705 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_2705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_2706 PF00577 Outer membrane usher protein CH47_2706 PF13954 PapC N-terminal domain CH47_2706 PF13953 PapC C-terminal domain CH47_2707 PF00419 Fimbrial protein CH47_2708 PF00419 Fimbrial protein CH47_271 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH47_271 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_2712 PF00488 MutS domain V CH47_2712 PF01624 MutS domain I CH47_2712 PF05188 MutS domain II CH47_2712 PF05192 MutS domain III CH47_2712 PF05190 MutS family domain IV CH47_2713 PF04545 Sigma-70, region 4 CH47_2713 PF04542 Sigma-70 region 2 CH47_2713 PF00140 Sigma-70 factor, region 1.2 CH47_2713 PF04539 Sigma-70 region 3 CH47_2714 PF01551 Peptidase family M23 CH47_2714 PF01476 LysM domain CH47_2716 PF01975 Survival protein SurE CH47_2717 PF01142 tRNA pseudouridine synthase D (TruD) CH47_2718 PF02542 YgbB family CH47_2719 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH47_272 PF02684 Lipid-A-disaccharide synthetase CH47_2720 PF04977 Septum formation initiator CH47_2721 PF12084 Protein of unknown function (DUF3561) CH47_2723 PF00009 Elongation factor Tu GTP binding domain CH47_2724 PF01507 Phosphoadenosine phosphosulfate reductase family CH47_2725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_2725 PF14824 Sirohaem biosynthesis protein central CH47_2725 PF10414 Sirohaem synthase dimerisation region CH47_2726 PF04389 Peptidase family M28 CH47_2729 PF01507 Phosphoadenosine phosphosulfate reductase family CH47_273 PF01351 Ribonuclease HII CH47_2730 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH47_2730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH47_2731 PF00258 Flavodoxin CH47_2731 PF00667 FAD binding domain CH47_2731 PF00175 Oxidoreductase NAD-binding domain CH47_2732 PF01242 6-pyruvoyl tetrahydropterin synthase CH47_2733 PF04055 Radical SAM superfamily CH47_2734 PF00080 Copper/zinc superoxide dismutase (SODC) CH47_2736 PF02371 Transposase IS116/IS110/IS902 family CH47_2736 PF01548 Transposase CH47_2738 PF03952 Enolase, N-terminal domain CH47_2738 PF00113 Enolase, C-terminal TIM barrel domain CH47_2739 PF00117 Glutamine amidotransferase class-I CH47_2739 PF06418 CTP synthase N-terminus CH47_274 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH47_274 PF14579 Helix-hairpin-helix motif CH47_274 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH47_274 PF01336 OB-fold nucleic acid binding domain CH47_274 PF02811 PHP domain CH47_2740 PF03819 MazG nucleotide pyrophosphohydrolase domain CH47_2741 PF04607 Region found in RelA / SpoT proteins CH47_2741 PF13291 ACT domain CH47_2741 PF02824 TGS domain CH47_2742 PF05958 tRNA (Uracil-5-)-methyltransferase CH47_2742 PF01938 TRAM domain CH47_2743 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH47_2743 PF00072 Response regulator receiver domain CH47_2743 PF01627 Hpt domain CH47_2743 PF00512 His Kinase A (phospho-acceptor) domain CH47_2743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_2743 PF00672 HAMP domain CH47_2744 PF00595 PDZ domain CH47_2745 PF01966 HD domain CH47_2745 PF13286 Phosphohydrolase-associated domain CH47_2746 PF01048 Phosphorylase superfamily CH47_2747 PF01497 Periplasmic binding protein CH47_2748 PF03458 UPF0126 domain CH47_2749 PF01521 Iron-sulphur cluster biosynthesis CH47_275 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH47_2750 PF00654 Voltage gated chloride channel CH47_2751 PF00202 Aminotransferase class-III CH47_2752 PF07690 Major Facilitator Superfamily CH47_2753 PF01548 Transposase CH47_2753 PF02371 Transposase IS116/IS110/IS902 family CH47_2754 PF01032 FecCD transport family CH47_2755 PF01497 Periplasmic binding protein CH47_2756 PF00005 ABC transporter CH47_2757 PF00905 Penicillin binding protein transpeptidase domain CH47_2757 PF00912 Transglycosylase CH47_2757 PF14814 Bifunctional transglycosylase second domain CH47_2757 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH47_2758 PF04408 Helicase associated domain (HA2) CH47_2758 PF00271 Helicase conserved C-terminal domain CH47_2758 PF08482 ATP-dependent helicase C-terminal CH47_2758 PF00270 DEAD/DEAH box helicase CH47_2759 PF02834 LigT like Phosphoesterase CH47_2760 PF03749 Sugar fermentation stimulation protein RE domain CH47_2760 PF17746 SfsA N-terminal OB domain CH47_2761 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH47_2762 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH47_2763 PF01743 Poly A polymerase head domain CH47_2763 PF12626 Polymerase A arginine-rich C-terminus CH47_2763 PF12627 Probable RNA and SrmB- binding site of polymerase A CH47_2764 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH47_2765 PF02548 Ketopantoate hydroxymethyltransferase CH47_2766 PF02569 Pantoate-beta-alanine ligase CH47_2767 PF02261 Aspartate decarboxylase CH47_2768 PF01522 Polysaccharide deacetylase CH47_2769 PF01061 ABC-2 type transporter CH47_277 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH47_2770 PF00005 ABC transporter CH47_2771 PF00484 Carbonic anhydrase CH47_2772 PF00156 Phosphoribosyl transferase domain CH47_2773 PF07731 Multicopper oxidase CH47_2773 PF00394 Multicopper oxidase CH47_2773 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH47_2773 PF07732 Multicopper oxidase CH47_2774 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH47_2775 PF17284 Spermidine synthase tetramerisation domain CH47_2776 PF02675 S-adenosylmethionine decarboxylase CH47_2778 PF00892 EamA-like transporter family CH47_2779 PF06062 Uncharacterised protein family (UPF0231) CH47_278 PF01171 PP-loop family CH47_278 PF09179 TilS substrate binding domain CH47_278 PF11734 TilS substrate C-terminal domain CH47_2780 PF11791 Aconitate B N-terminal domain CH47_2780 PF06434 Aconitate hydratase 2 N-terminus CH47_2780 PF00330 Aconitase family (aconitate hydratase) CH47_2781 PF07715 TonB-dependent Receptor Plug Domain CH47_2781 PF00593 TonB dependent receptor CH47_2783 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH47_2783 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_2784 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH47_2784 PF00364 Biotin-requiring enzyme CH47_2784 PF02817 e3 binding domain CH47_2785 PF17831 Pyruvate dehydrogenase E1 component middle domain CH47_2785 PF00456 Transketolase, thiamine diphosphate binding domain CH47_2786 PF00392 Bacterial regulatory proteins, gntR family CH47_2786 PF07729 FCD domain CH47_2787 PF00324 Amino acid permease CH47_2788 PF07979 Intimin C-type lectin domain CH47_2788 PF02369 Bacterial Ig-like domain (group 1) CH47_2788 PF02368 Bacterial Ig-like domain (group 2) CH47_2788 PF11924 Inverse autotransporter, beta-domain CH47_2788 PF01476 LysM domain CH47_2789 PF17113 Regulatory signalling modulator protein AmpE CH47_279 PF00034 Cytochrome c CH47_2790 PF01510 N-acetylmuramoyl-L-alanine amidase CH47_2791 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH47_2791 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH47_2792 PF07963 Prokaryotic N-terminal methylation motif CH47_2793 PF00437 Type II/IV secretion system protein CH47_2793 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH47_2794 PF00482 Type II secretion system (T2SS), protein F CH47_2795 PF00478 IMP dehydrogenase / GMP reductase domain CH47_2796 PF01121 Dephospho-CoA kinase CH47_2797 PF07072 Cell division protein CH47_2798 PF03884 DNA gyrase inhibitor YacG CH47_2799 PF00293 NUDIX domain CH47_28 PF00005 ABC transporter CH47_280 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH47_2800 PF02810 SEC-C motif CH47_2800 PF07517 SecA DEAD-like domain CH47_2800 PF01043 SecA preprotein cross-linking domain CH47_2800 PF07516 SecA Wing and Scaffold domain CH47_2801 PF06558 Secretion monitor precursor protein (SecM) CH47_2803 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH47_2804 PF12327 FtsZ family, C-terminal domain CH47_2804 PF00091 Tubulin/FtsZ family, GTPase domain CH47_2805 PF02491 SHS2 domain inserted in FTSA CH47_2806 PF08478 POTRA domain, FtsQ-type CH47_2806 PF03799 Cell division protein FtsQ CH47_2807 PF07478 D-ala D-ala ligase C-terminus CH47_2807 PF01820 D-ala D-ala ligase N-terminus CH47_2808 PF08245 Mur ligase middle domain CH47_2808 PF02875 Mur ligase family, glutamate ligase domain CH47_2808 PF01225 Mur ligase family, catalytic domain CH47_2809 PF03033 Glycosyltransferase family 28 N-terminal domain CH47_2809 PF04101 Glycosyltransferase family 28 C-terminal domain CH47_281 PF06786 Uncharacterised protein family (UPF0253) CH47_2810 PF01098 Cell cycle protein CH47_2811 PF08245 Mur ligase middle domain CH47_2811 PF02875 Mur ligase family, glutamate ligase domain CH47_2812 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH47_2812 PF00953 Glycosyl transferase family 4 CH47_2813 PF01225 Mur ligase family, catalytic domain CH47_2813 PF08245 Mur ligase middle domain CH47_2813 PF02875 Mur ligase family, glutamate ligase domain CH47_2814 PF08245 Mur ligase middle domain CH47_2814 PF01225 Mur ligase family, catalytic domain CH47_2814 PF02875 Mur ligase family, glutamate ligase domain CH47_2815 PF03717 Penicillin-binding Protein dimerisation domain CH47_2815 PF00905 Penicillin binding protein transpeptidase domain CH47_2816 PF04999 Cell division protein FtsL CH47_2817 PF01795 MraW methylase family CH47_2818 PF02381 MraZ protein, putative antitoxin-like CH47_2819 PF06610 L-alanine exporter CH47_282 PF07152 YaeQ protein CH47_2820 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_2820 PF00356 Bacterial regulatory proteins, lacI family CH47_2821 PF10369 Small subunit of acetolactate synthase CH47_2822 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_2822 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_2822 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_2823 PF00501 AMP-binding enzyme CH47_2825 PF03466 LysR substrate binding domain CH47_2825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2826 PF08502 LeuA allosteric (dimerisation) domain CH47_2826 PF00682 HMGL-like CH47_2827 PF00180 Isocitrate/isopropylmalate dehydrogenase CH47_2828 PF00330 Aconitase family (aconitate hydratase) CH47_2829 PF00694 Aconitase C-terminal domain CH47_283 PF00472 RF-1 domain CH47_2831 PF01212 Beta-eliminating lyase CH47_2832 PF03222 Tryptophan/tyrosine permease family CH47_2833 PF07690 Major Facilitator Superfamily CH47_2835 PF04221 RelB antitoxin CH47_2837 PF04055 Radical SAM superfamily CH47_2838 PF12793 Sugar transport-related sRNA regulator N-term CH47_2838 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_284 PF04170 NlpE N-terminal domain CH47_284 PF17185 NlpE C-terminal OB domain CH47_2842 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2843 PF09335 SNARE associated Golgi protein CH47_2844 PF00005 ABC transporter CH47_2845 PF03104 DNA polymerase family B, exonuclease domain CH47_2845 PF00136 DNA polymerase family B CH47_2846 PF00176 SNF2 family N-terminal domain CH47_2846 PF18339 RapA N-terminal Tudor like domain 1 CH47_2846 PF12137 RNA polymerase recycling family C-terminal CH47_2846 PF18337 RapA N-terminal Tudor like domain CH47_2846 PF00271 Helicase conserved C-terminal domain CH47_2847 PF00849 RNA pseudouridylate synthase CH47_2848 PF00226 DnaJ domain CH47_2848 PF05099 Tellurite resistance protein TerB CH47_2849 PF04453 LPS transport system D CH47_2849 PF03968 OstA-like protein CH47_285 PF03129 Anticodon binding domain CH47_285 PF04073 Aminoacyl-tRNA editing domain CH47_285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH47_2850 PF00639 PPIC-type PPIASE domain CH47_2850 PF09312 SurA N-terminal domain CH47_2851 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH47_2852 PF00398 Ribosomal RNA adenine dimethylase CH47_2853 PF04379 ApaG domain CH47_2854 PF00149 Calcineurin-like phosphoesterase CH47_2855 PF00186 Dihydrofolate reductase CH47_2856 PF12821 Threonine/Serine exporter, ThrE CH47_2857 PF06738 Putative threonine/serine exporter CH47_2858 PF01810 LysE type translocator CH47_2859 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH47_2859 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH47_2859 PF02142 MGS-like domain CH47_286 PF18389 TrmO C-terminal domain CH47_286 PF01980 tRNA-methyltransferase O CH47_2860 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH47_2860 PF00117 Glutamine amidotransferase class-I CH47_2861 PF05173 Dihydrodipicolinate reductase, C-terminus CH47_2861 PF01113 Dihydrodipicolinate reductase, N-terminus CH47_2862 PF02401 LytB protein CH47_2863 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH47_2864 PF01252 Signal peptidase (SPase) II CH47_2865 PF00133 tRNA synthetases class I (I, L, M and V) CH47_2865 PF06827 Zinc finger found in FPG and IleRS CH47_2865 PF08264 Anticodon-binding domain of tRNA CH47_2866 PF06574 FAD synthetase CH47_2866 PF01687 Riboflavin kinase CH47_2867 PF01649 Ribosomal protein S20 CH47_2868 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2868 PF03466 LysR substrate binding domain CH47_2869 PF06965 Na+/H+ antiporter 1 CH47_287 PF16358 RcsF lipoprotein CH47_2870 PF00226 DnaJ domain CH47_2870 PF00684 DnaJ central domain CH47_2870 PF01556 DnaJ C terminal domain CH47_2871 PF00012 Hsp70 protein CH47_2872 PF01184 GPR1/FUN34/yaaH family CH47_2874 PF07690 Major Facilitator Superfamily CH47_2875 PF00994 Probable molybdopterin binding domain CH47_2876 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH47_2877 PF03883 Peroxide stress protein YaaA CH47_2878 PF14821 Threonine synthase N terminus CH47_2878 PF00291 Pyridoxal-phosphate dependent enzyme CH47_2879 PF00288 GHMP kinases N terminal domain CH47_2879 PF08544 GHMP kinases C terminal CH47_288 PF03180 NLPA lipoprotein CH47_2880 PF00696 Amino acid kinase family CH47_2880 PF03447 Homoserine dehydrogenase, NAD binding domain CH47_2880 PF00742 Homoserine dehydrogenase CH47_2880 PF13840 ACT domain CH47_2880 PF01842 ACT domain CH47_2881 PF00486 Transcriptional regulatory protein, C terminal CH47_2881 PF00072 Response regulator receiver domain CH47_2882 PF05981 CreA protein CH47_2883 PF00300 Histidine phosphatase superfamily (branch 1) CH47_2884 PF12833 Helix-turn-helix domain CH47_2884 PF06445 GyrI-like small molecule binding domain CH47_2885 PF01931 Protein of unknown function DUF84 CH47_2886 PF01371 Trp repressor protein CH47_2887 PF01464 Transglycosylase SLT domain CH47_2887 PF14718 Soluble lytic murein transglycosylase L domain CH47_2888 PF00689 Cation transporting ATPase, C-terminus CH47_2888 PF00690 Cation transporter/ATPase, N-terminus CH47_289 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2890 PF00990 Diguanylate cyclase, GGDEF domain CH47_2890 PF17152 Periplasmic sensor domain CH47_2891 PF00691 OmpA family CH47_2892 PF12848 ABC transporter CH47_2892 PF00005 ABC transporter CH47_2894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2894 PF03466 LysR substrate binding domain CH47_2895 PF01381 Helix-turn-helix CH47_2895 PF13521 AAA domain CH47_2896 PF08240 Alcohol dehydrogenase GroES-like domain CH47_2896 PF00107 Zinc-binding dehydrogenase CH47_2897 PF18073 Rubredoxin metal binding domain CH47_2898 PF18429 Domain of unknown function (DUF5609) CH47_2899 PF10144 Bacterial virulence factor haemolysin CH47_29 PF00557 Metallopeptidase family M24 CH47_290 PF09383 NIL domain CH47_290 PF00005 ABC transporter CH47_2900 PF07804 HipA-like C-terminal domain CH47_2901 PF01048 Phosphorylase superfamily CH47_2902 PF01676 Metalloenzyme superfamily CH47_2903 PF00591 Glycosyl transferase family, a/b domain CH47_2903 PF02885 Glycosyl transferase family, helical bundle domain CH47_2903 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH47_2904 PF01791 DeoC/LacD family aldolase CH47_2905 PF01773 Na+ dependent nucleoside transporter N-terminus CH47_2905 PF07662 Na+ dependent nucleoside transporter C-terminus CH47_2905 PF07670 Nucleoside recognition CH47_2906 PF01026 TatD related DNase CH47_2907 PF01734 Patatin-like phospholipase CH47_2908 PF07043 Protein of unknown function (DUF1328) CH47_2909 PF04972 BON domain CH47_2910 PF00009 Elongation factor Tu GTP binding domain CH47_2910 PF16658 Class II release factor RF3, C-terminal domain CH47_2910 PF03144 Elongation factor Tu domain 2 CH47_2911 PF00583 Acetyltransferase (GNAT) family CH47_2912 PF03603 DNA polymerase III psi subunit CH47_2913 PF08468 Methyltransferase small domain N-terminal CH47_2913 PF05175 Methyltransferase small domain CH47_2914 PF00248 Aldo/keto reductase family CH47_2915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2915 PF03466 LysR substrate binding domain CH47_2918 PF07256 Protein of unknown function (DUF1435) CH47_2919 PF00990 Diguanylate cyclase, GGDEF domain CH47_2920 PF07715 TonB-dependent Receptor Plug Domain CH47_2920 PF00593 TonB dependent receptor CH47_2920 PF07660 Secretin and TonB N terminus short domain CH47_2922 PF00294 pfkB family carbohydrate kinase CH47_2923 PF02264 LamB porin CH47_2923 PF11471 Maltoporin periplasmic N-terminal extension CH47_2924 PF00367 phosphotransferase system, EIIB CH47_2924 PF02378 Phosphotransferase system, EIIC CH47_2925 PF08244 Glycosyl hydrolases family 32 C terminal CH47_2925 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH47_2926 PF13407 Periplasmic binding protein domain CH47_2926 PF00356 Bacterial regulatory proteins, lacI family CH47_2927 PF02954 Bacterial regulatory protein, Fis family CH47_2927 PF00989 PAS fold CH47_2927 PF00158 Sigma-54 interaction domain CH47_2928 PF01095 Pectinesterase CH47_2933 PF02543 Carbamoyltransferase N-terminus CH47_2933 PF16861 Carbamoyltransferase C-terminus CH47_2935 PF05524 PEP-utilising enzyme, N-terminal CH47_2935 PF00391 PEP-utilising enzyme, mobile domain CH47_2935 PF00381 PTS HPr component phosphorylation site CH47_2935 PF03610 PTS system fructose IIA component CH47_2936 PF02734 DAK2 domain CH47_2937 PF02733 Dak1 domain CH47_2938 PF00465 Iron-containing alcohol dehydrogenase CH47_2939 PF01609 Transposase DDE domain CH47_2939 PF13006 Insertion element 4 transposase N-terminal CH47_2940 PF00873 AcrB/AcrD/AcrF family CH47_2941 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_2943 PF13520 Amino acid permease CH47_2945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH47_2946 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_2946 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH47_2947 PF00325 Bacterial regulatory proteins, crp family CH47_2947 PF04198 Putative sugar-binding domain CH47_2948 PF00005 ABC transporter CH47_2949 PF02653 Branched-chain amino acid transport system / permease component CH47_2950 PF02653 Branched-chain amino acid transport system / permease component CH47_2951 PF13407 Periplasmic binding protein domain CH47_2952 PF01791 DeoC/LacD family aldolase CH47_2953 PF03992 Antibiotic biosynthesis monooxygenase CH47_2955 PF10696 Protein of unknown function (DUF2501) CH47_2967 PF00583 Acetyltransferase (GNAT) family CH47_2970 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH47_2971 PF04221 RelB antitoxin CH47_2974 PF00589 Phage integrase family CH47_2974 PF13356 Arm DNA-binding domain CH47_2976 PF03739 Lipopolysaccharide export system permease LptF/LptG CH47_2977 PF03739 Lipopolysaccharide export system permease LptF/LptG CH47_2978 PF00883 Cytosol aminopeptidase family, catalytic domain CH47_2978 PF02789 Cytosol aminopeptidase family, N-terminal domain CH47_2979 PF04364 DNA polymerase III chi subunit, HolC CH47_2980 PF10458 Valyl tRNA synthetase tRNA binding arm CH47_2980 PF00133 tRNA synthetases class I (I, L, M and V) CH47_2980 PF08264 Anticodon-binding domain of tRNA CH47_2981 PF00583 Acetyltransferase (GNAT) family CH47_2982 PF06877 Regulator of ribonuclease activity B CH47_2983 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH47_2983 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH47_2984 PF04074 YhcH/YjgK/YiaL CH47_2986 PF00528 Binding-protein-dependent transport system inner membrane component CH47_2988 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_2988 PF00005 ABC transporter CH47_2989 PF00005 ABC transporter CH47_2989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_2992 PF02525 Flavodoxin-like fold CH47_2993 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_2993 PF03466 LysR substrate binding domain CH47_2994 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH47_2994 PF03477 ATP cone domain CH47_2998 PF07702 UTRA domain CH47_2998 PF00392 Bacterial regulatory proteins, gntR family CH47_2999 PF06754 Phosphonate metabolism protein PhnG CH47_3 PF00374 Nickel-dependent hydrogenase CH47_3000 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH47_3001 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH47_3002 PF06007 Phosphonate metabolism protein PhnJ CH47_3003 PF00005 ABC transporter CH47_3004 PF00005 ABC transporter CH47_3005 PF07969 Amidohydrolase family CH47_3007 PF12706 Beta-lactamase superfamily domain CH47_3008 PF13460 NAD(P)H-binding CH47_3012 PF17912 MalK OB fold domain CH47_3012 PF03459 TOBE domain CH47_3012 PF00005 ABC transporter CH47_3013 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3015 PF13416 Bacterial extracellular solute-binding protein CH47_3017 PF07940 Heparinase II/III-like protein CH47_3017 PF05426 Alginate lyase CH47_3018 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH47_3018 PF01276 Orn/Lys/Arg decarboxylase, major domain CH47_3018 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH47_3019 PF13520 Amino acid permease CH47_3020 PF13508 Acetyltransferase (GNAT) domain CH47_3021 PF01541 GIY-YIG catalytic domain CH47_3025 PF03313 Serine dehydratase alpha chain CH47_3027 PF02321 Outer membrane efflux protein CH47_3027 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH47_3028 PF00873 AcrB/AcrD/AcrF family CH47_3029 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_3029 PF00529 HlyD membrane-fusion protein of T1SS CH47_303 PF00550 Phosphopantetheine attachment site CH47_3030 PF00296 Luciferase-like monooxygenase CH47_3032 PF03880 DbpA RNA binding domain CH47_3032 PF00271 Helicase conserved C-terminal domain CH47_3032 PF12343 Cold shock protein DEAD box A CH47_3032 PF00270 DEAD/DEAH box helicase CH47_3033 PF13181 Tetratricopeptide repeat CH47_3033 PF07719 Tetratricopeptide repeat CH47_3034 PF00575 S1 RNA binding domain CH47_3034 PF03725 3' exoribonuclease family, domain 2 CH47_3034 PF01138 3' exoribonuclease family, domain 1 CH47_3034 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH47_3034 PF00013 KH domain CH47_3035 PF00312 Ribosomal protein S15 CH47_3036 PF09157 Pseudouridine synthase II TruB, C-terminal CH47_3036 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH47_3036 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH47_3037 PF02033 Ribosome-binding factor A CH47_3040 PF00575 S1 RNA binding domain CH47_3040 PF13184 NusA-like KH domain CH47_3040 PF08529 NusA N-terminal domain CH47_3041 PF02576 RimP N-terminal domain CH47_3041 PF17384 RimP C-terminal SH3 domain CH47_3044 PF03840 Preprotein translocase SecG subunit CH47_3045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH47_3045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH47_3045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH47_3045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH47_3046 PF00809 Pterin binding enzyme CH47_3047 PF00004 ATPase family associated with various cellular activities (AAA) CH47_3047 PF17862 AAA+ lid domain CH47_3047 PF01434 Peptidase family M41 CH47_3047 PF06480 FtsH Extracellular CH47_3048 PF01728 FtsJ-like methyltransferase CH47_3049 PF01985 CRS1 / YhbY (CRM) domain CH47_305 PF00501 AMP-binding enzyme CH47_305 PF13193 AMP-binding enzyme C-terminal domain CH47_3050 PF01272 Transcription elongation factor, GreA/GreB, C-term CH47_3050 PF03449 Transcription elongation factor, N-terminal CH47_3051 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH47_3052 PF00486 Transcriptional regulatory protein, C terminal CH47_3052 PF00072 Response regulator receiver domain CH47_3053 PF00512 His Kinase A (phospho-acceptor) domain CH47_3053 PF00672 HAMP domain CH47_3053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3054 PF01926 50S ribosome-binding GTPase CH47_3054 PF01018 GTP1/OBG CH47_3055 PF00892 EamA-like transporter family CH47_3056 PF01016 Ribosomal L27 protein CH47_3057 PF00829 Ribosomal prokaryotic L21 protein CH47_3058 PF00348 Polyprenyl synthetase CH47_306 PF07977 FabA-like domain CH47_3060 PF13693 Winged helix-turn-helix DNA-binding CH47_3061 PF00056 lactate/malate dehydrogenase, NAD binding domain CH47_3061 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH47_3062 PF01316 Arginine repressor, DNA binding domain CH47_3062 PF02863 Arginine repressor, C-terminal domain CH47_3064 PF08245 Mur ligase middle domain CH47_3064 PF02875 Mur ligase family, glutamate ligase domain CH47_3064 PF01225 Mur ligase family, catalytic domain CH47_3065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH47_3066 PF00672 HAMP domain CH47_3066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_3066 PF02203 Tar ligand binding domain homologue CH47_3067 PF00719 Inorganic pyrophosphatase CH47_3068 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH47_3069 PF04357 TamB, inner membrane protein subunit of TAM complex CH47_307 PF00535 Glycosyl transferase family 2 CH47_3070 PF17243 POTRA domain TamA domain 1 CH47_3070 PF07244 Surface antigen variable number repeat CH47_3070 PF01103 Surface antigen CH47_3071 PF01625 Peptide methionine sulfoxide reductase CH47_3072 PF00571 CBS domain CH47_3072 PF03471 Transporter associated domain CH47_3072 PF01595 Cyclin M transmembrane N-terminal domain CH47_3073 PF06526 Protein of unknown function (DUF1107) CH47_3074 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH47_3075 PF00459 Inositol monophosphatase family CH47_3076 PF02872 5'-nucleotidase, C-terminal domain CH47_3076 PF00149 Calcineurin-like phosphoesterase CH47_3077 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH47_3077 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH47_3078 PF08525 Opacity-associated protein A N-terminal motif CH47_3078 PF04225 Opacity-associated protein A LysM-like domain CH47_3080 PF01281 Ribosomal protein L9, N-terminal domain CH47_3080 PF03948 Ribosomal protein L9, C-terminal domain CH47_3081 PF01084 Ribosomal protein S18 CH47_3082 PF01250 Ribosomal protein S6 CH47_3084 PF00326 Prolyl oligopeptidase family CH47_3085 PF07338 Protein of unknown function (DUF1471) CH47_3086 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH47_3086 PF02770 Acyl-CoA dehydrogenase, middle domain CH47_3086 PF18158 Adaptive response protein AidB N-terminal domain CH47_3087 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH47_3087 PF00588 SpoU rRNA Methylase family CH47_3088 PF00575 S1 RNA binding domain CH47_3088 PF08461 Ribonuclease R winged-helix domain CH47_3088 PF17876 Cold shock domain CH47_3088 PF00773 RNB domain CH47_3088 PF08206 Ribonuclease B OB domain CH47_3089 PF02082 Transcriptional regulator CH47_3090 PF00709 Adenylosuccinate synthetase CH47_3091 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH47_3092 PF01145 SPFH domain / Band 7 family CH47_3093 PF12221 Bacterial membrane protein N terminal CH47_3093 PF01145 SPFH domain / Band 7 family CH47_3094 PF16360 GTP-binding GTPase Middle Region CH47_3094 PF13167 GTP-binding GTPase N-terminal CH47_3094 PF01926 50S ribosome-binding GTPase CH47_3095 PF17209 Hfq protein CH47_3097 PF01119 DNA mismatch repair protein, C-terminal domain CH47_3097 PF08676 MutL C terminal dimerisation domain CH47_3098 PF01520 N-acetylmuramoyl-L-alanine amidase CH47_3099 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH47_31 PF00072 Response regulator receiver domain CH47_31 PF00486 Transcriptional regulatory protein, C terminal CH47_3100 PF03853 YjeF-related protein N-terminus CH47_3100 PF01256 Carbohydrate kinase CH47_3101 PF08331 Domain of unknown function (DUF1730) CH47_3105 PF00929 Exonuclease CH47_3106 PF03193 RsgA GTPase CH47_3107 PF02666 Phosphatidylserine decarboxylase CH47_3108 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH47_3108 PF12795 Mechanosensitive ion channel porin domain CH47_3108 PF00924 Mechanosensitive ion channel CH47_3109 PF00152 tRNA synthetases class II (D, K and N) CH47_3110 PF00890 FAD binding domain CH47_3110 PF02910 Fumarate reductase flavoprotein C-term CH47_3111 PF13085 2Fe-2S iron-sulfur cluster binding domain CH47_3111 PF13183 4Fe-4S dicluster domain CH47_3112 PF02300 Fumarate reductase subunit C CH47_3113 PF02313 Fumarate reductase subunit D CH47_3114 PF08212 Lipocalin-like domain CH47_3115 PF00893 Small Multidrug Resistance protein CH47_3116 PF08085 Entericidin EcnA/B family CH47_3117 PF01132 Elongation factor P (EF-P) OB domain CH47_3117 PF08207 Elongation factor P (EF-P) KOW-like domain CH47_3117 PF09285 Elongation factor P, C-terminal CH47_3118 PF04055 Radical SAM superfamily CH47_3119 PF13698 Domain of unknown function (DUF4156) CH47_312 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_312 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_3120 PF00118 TCP-1/cpn60 chaperonin family CH47_3121 PF00166 Chaperonin 10 Kd subunit CH47_3122 PF04186 FxsA cytoplasmic membrane protein CH47_3123 PF10415 Fumarase C C-terminus CH47_3123 PF00206 Lyase CH47_3124 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH47_3125 PF03091 CutA1 divalent ion tolerance protein CH47_3126 PF11412 Disulphide bond corrector protein DsbC CH47_3126 PF02683 Cytochrome C biogenesis protein transmembrane region CH47_3127 PF02595 Glycerate kinase family CH47_3130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_3130 PF00529 HlyD membrane-fusion protein of T1SS CH47_3131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3131 PF03466 LysR substrate binding domain CH47_3132 PF00248 Aldo/keto reductase family CH47_3135 PF02901 Pyruvate formate lyase-like CH47_3135 PF01228 Glycine radical CH47_3136 PF00871 Acetokinase family CH47_3137 PF01490 Transmembrane amino acid transporter protein CH47_3138 PF00291 Pyridoxal-phosphate dependent enzyme CH47_3139 PF04055 Radical SAM superfamily CH47_3140 PF06228 Haem utilisation ChuX/HutX CH47_3142 PF10636 Hemin uptake protein hemP CH47_3143 PF07715 TonB-dependent Receptor Plug Domain CH47_3143 PF00593 TonB dependent receptor CH47_3144 PF05171 Haemin-degrading HemS.ChuX domain CH47_3145 PF01497 Periplasmic binding protein CH47_3146 PF01032 FecCD transport family CH47_3147 PF00005 ABC transporter CH47_3148 PF00392 Bacterial regulatory proteins, gntR family CH47_3148 PF00155 Aminotransferase class I and II CH47_315 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_315 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_3150 PF00593 TonB dependent receptor CH47_3150 PF07715 TonB-dependent Receptor Plug Domain CH47_3151 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH47_3151 PF12795 Mechanosensitive ion channel porin domain CH47_3151 PF00924 Mechanosensitive ion channel CH47_3152 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CH47_3153 PF05193 Peptidase M16 inactive domain CH47_3153 PF00675 Insulinase (Peptidase family M16) CH47_3154 PF06472 ABC transporter transmembrane region 2 CH47_3154 PF00005 ABC transporter CH47_3155 PF07715 TonB-dependent Receptor Plug Domain CH47_3156 PF16220 Domain of unknown function (DUF4880) CH47_3156 PF04773 FecR protein CH47_3159 PF01206 Sulfurtransferase TusA CH47_316 PF00248 Aldo/keto reductase family CH47_3160 PF04143 Sulphur transport CH47_3161 PF14525 AraC-binding-like domain CH47_3161 PF12833 Helix-turn-helix domain CH47_3162 PF00072 Response regulator receiver domain CH47_3162 PF00196 Bacterial regulatory proteins, luxR family CH47_3163 PF00375 Sodium:dicarboxylate symporter family CH47_3164 PF13193 AMP-binding enzyme C-terminal domain CH47_3164 PF00501 AMP-binding enzyme CH47_3164 PF16177 Acetyl-coenzyme A synthetase N-terminus CH47_3165 PF04341 Protein of unknown function, DUF485 CH47_3166 PF00474 Sodium:solute symporter family CH47_3168 PF13276 HTH-like domain CH47_3168 PF00665 Integrase core domain CH47_3168 PF13333 Integrase core domain CH47_317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_317 PF03466 LysR substrate binding domain CH47_3174 PF01808 AICARFT/IMPCHase bienzyme CH47_3174 PF02142 MGS-like domain CH47_3175 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH47_3175 PF02843 Phosphoribosylglycinamide synthetase, C domain CH47_3175 PF02844 Phosphoribosylglycinamide synthetase, N domain CH47_3176 PF07356 Protein of unknown function (DUF1481) CH47_3177 PF00216 Bacterial DNA-binding protein CH47_3178 PF04222 Protein of unknown function (DUF416) CH47_3179 PF04493 Endonuclease V CH47_318 PF07690 Major Facilitator Superfamily CH47_3180 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH47_3181 PF00293 NUDIX domain CH47_3181 PF09297 NADH pyrophosphatase zinc ribbon domain CH47_3182 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH47_3183 PF13667 ThiC-associated domain CH47_3183 PF01964 Radical SAM ThiC family CH47_3184 PF02581 Thiamine monophosphate synthase CH47_3185 PF00899 ThiF family CH47_3186 PF02597 ThiS family CH47_3187 PF05690 Thiazole biosynthesis protein ThiG CH47_3188 PF04055 Radical SAM superfamily CH47_3188 PF06968 Biotin and Thiamin Synthesis associated domain CH47_3189 PF01609 Transposase DDE domain CH47_3189 PF13006 Insertion element 4 transposase N-terminal CH47_319 PF03372 Endonuclease/Exonuclease/phosphatase family CH47_3190 PF05000 RNA polymerase Rpb1, domain 4 CH47_3190 PF04998 RNA polymerase Rpb1, domain 5 CH47_3190 PF04983 RNA polymerase Rpb1, domain 3 CH47_3190 PF00623 RNA polymerase Rpb1, domain 2 CH47_3190 PF04997 RNA polymerase Rpb1, domain 1 CH47_3191 PF04563 RNA polymerase beta subunit CH47_3191 PF04561 RNA polymerase Rpb2, domain 2 CH47_3191 PF04560 RNA polymerase Rpb2, domain 7 CH47_3191 PF00562 RNA polymerase Rpb2, domain 6 CH47_3191 PF10385 RNA polymerase beta subunit external 1 domain CH47_3191 PF04565 RNA polymerase Rpb2, domain 3 CH47_3192 PF16320 Ribosomal protein L7/L12 dimerisation domain CH47_3192 PF00542 Ribosomal protein L7/L12 C-terminal domain CH47_3193 PF00466 Ribosomal protein L10 CH47_3194 PF00687 Ribosomal protein L1p/L10e family CH47_3195 PF03946 Ribosomal protein L11, N-terminal domain CH47_3195 PF00298 Ribosomal protein L11, RNA binding domain CH47_3196 PF02357 Transcription termination factor nusG CH47_3196 PF00467 KOW motif CH47_3197 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH47_3198 PF03143 Elongation factor Tu C-terminal domain CH47_3198 PF03144 Elongation factor Tu domain 2 CH47_3198 PF00009 Elongation factor Tu GTP binding domain CH47_320 PF01476 LysM domain CH47_320 PF01464 Transglycosylase SLT domain CH47_3203 PF13673 Acetyltransferase (GNAT) domain CH47_3204 PF00485 Phosphoribulokinase / Uridine kinase family CH47_3205 PF08279 HTH domain CH47_3205 PF02237 Biotin protein ligase C terminal domain CH47_3205 PF03099 Biotin/lipoate A/B protein ligase family CH47_3206 PF01565 FAD binding domain CH47_3206 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH47_3207 PF01797 Transposase IS200 like CH47_321 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH47_321 PF00753 Metallo-beta-lactamase superfamily CH47_3213 PF12724 Flavodoxin domain CH47_3214 PF02386 Cation transport protein CH47_3215 PF09186 Domain of unknown function (DUF1949) CH47_3215 PF01205 Uncharacterized protein family UPF0029 CH47_3216 PF00557 Metallopeptidase family M24 CH47_3217 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH47_3217 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH47_3217 PF00378 Enoyl-CoA hydratase/isomerase CH47_3218 PF00108 Thiolase, N-terminal domain CH47_3218 PF02803 Thiolase, C-terminal domain CH47_3219 PF00970 Oxidoreductase FAD-binding domain CH47_3219 PF00175 Oxidoreductase NAD-binding domain CH47_322 PF08241 Methyltransferase domain CH47_3220 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH47_3221 PF02357 Transcription termination factor nusG CH47_3222 PF00490 Delta-aminolevulinic acid dehydratase CH47_3223 PF01026 TatD related DNase CH47_3224 PF00902 Sec-independent protein translocase protein (TatC) CH47_3226 PF02416 mttA/Hcf106 family CH47_3227 PF03109 ABC1 family CH47_3228 PF02036 SCP-2 sterol transfer family CH47_3229 PF01209 ubiE/COQ5 methyltransferase family CH47_323 PF00075 RNase H CH47_3230 PF02646 RmuC family CH47_3231 PF09335 SNARE associated Golgi protein CH47_3232 PF13722 5TM C-terminal transporter carbon starvation CstA CH47_3232 PF02554 Carbon starvation protein CstA CH47_3234 PF01048 Phosphorylase superfamily CH47_3235 PF01738 Dienelactone hydrolase family CH47_3236 PF08267 Cobalamin-independent synthase, N-terminal domain CH47_3236 PF01717 Cobalamin-independent synthase, Catalytic domain CH47_3237 PF00892 EamA-like transporter family CH47_3238 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3238 PF03466 LysR substrate binding domain CH47_3239 PF03547 Membrane transport protein CH47_324 PF00929 Exonuclease CH47_3240 PF03009 Glycerophosphoryl diester phosphodiesterase family CH47_3241 PF00005 ABC transporter CH47_3241 PF17912 MalK OB fold domain CH47_3242 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3243 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3244 PF13416 Bacterial extracellular solute-binding protein CH47_3251 PF00005 ABC transporter CH47_3252 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH47_3252 PF00005 ABC transporter CH47_3253 PF11862 Domain of unknown function (DUF3382) CH47_3253 PF02653 Branched-chain amino acid transport system / permease component CH47_3254 PF02653 Branched-chain amino acid transport system / permease component CH47_3255 PF13458 Periplasmic binding protein CH47_3256 PF12568 Acetyltransferase (GNAT) domain, PanZ CH47_3257 PF04545 Sigma-70, region 4 CH47_3257 PF04542 Sigma-70 region 2 CH47_3257 PF00140 Sigma-70 factor, region 1.2 CH47_3258 PF18075 FtsX extracellular domain CH47_3258 PF02687 FtsX-like permease family CH47_3259 PF00005 ABC transporter CH47_326 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH47_3260 PF00448 SRP54-type protein, GTPase domain CH47_3260 PF02881 SRP54-type protein, helical bundle domain CH47_3262 PF06611 Protein of unknown function (DUF1145) CH47_3265 PF07947 YhhN family CH47_3266 PF00403 Heavy-metal-associated domain CH47_3267 PF01206 Sulfurtransferase TusA CH47_3268 PF02592 Putative vitamin uptake transporter CH47_3269 PF08786 DcrB CH47_327 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3270 PF02754 Cysteine-rich domain CH47_3270 PF13183 4Fe-4S dicluster domain CH47_3271 PF00890 FAD binding domain CH47_3272 PF01266 FAD dependent oxidoreductase CH47_3272 PF04324 BFD-like [2Fe-2S] binding domain CH47_3273 PF07690 Major Facilitator Superfamily CH47_3274 PF03009 Glycerophosphoryl diester phosphodiesterase family CH47_3276 PF12146 Serine aminopeptidase, S33 CH47_3277 PF01810 LysE type translocator CH47_3278 PF01810 LysE type translocator CH47_3279 PF16124 RecQ zinc-binding CH47_3279 PF00570 HRDC domain CH47_3279 PF00271 Helicase conserved C-terminal domain CH47_3279 PF00270 DEAD/DEAH box helicase CH47_3279 PF09382 RQC domain CH47_328 PF00571 CBS domain CH47_328 PF00005 ABC transporter CH47_3280 PF02253 Phospholipase A1 CH47_3281 PF03061 Thioesterase superfamily CH47_3282 PF00892 EamA-like transporter family CH47_3283 PF01544 CorA-like Mg2+ transporter protein CH47_3284 PF09370 Phosphoenolpyruvate hydrolase-like CH47_3287 PF13361 UvrD-like helicase C-terminal domain CH47_3287 PF00580 UvrD/REP helicase N-terminal domain CH47_3288 PF13419 Haloacid dehalogenase-like hydrolase CH47_3289 PF02899 Phage integrase, N-terminal SAM-like domain CH47_3289 PF00589 Phage integrase family CH47_3290 PF04340 Protein of unknown function, DUF484 CH47_3291 PF01678 Diaminopimelate epimerase CH47_3292 PF13627 Prokaryotic lipoprotein-attachment site CH47_3293 PF01491 Frataxin-like domain CH47_3294 PF12633 Adenylate cyclase NT domain CH47_3294 PF01295 Adenylate cyclase, class-I CH47_3295 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH47_3295 PF03900 Porphobilinogen deaminase, C-terminal domain CH47_3296 PF02602 Uroporphyrinogen-III synthase HemD CH47_3297 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH47_3298 PF07219 HemY protein N-terminus CH47_3298 PF07719 Tetratricopeptide repeat CH47_330 PF00268 Ribonucleotide reductase, small chain CH47_3304 PF00324 Amino acid permease CH47_3305 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH47_3306 PF06899 WzyE protein, O-antigen assembly polymerase CH47_3307 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH47_3308 PF01943 Polysaccharide biosynthesis protein CH47_3309 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH47_331 PF02867 Ribonucleotide reductase, barrel domain CH47_331 PF00317 Ribonucleotide reductase, all-alpha domain CH47_331 PF08343 Ribonucleotide reductase N-terminal CH47_3311 PF00483 Nucleotidyl transferase CH47_3312 PF16363 GDP-mannose 4,6 dehydratase CH47_3313 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH47_3313 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH47_3313 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH47_3314 PF02350 UDP-N-acetylglucosamine 2-epimerase CH47_3315 PF02706 Chain length determinant protein CH47_3316 PF00953 Glycosyl transferase family 4 CH47_3317 PF07498 Rho termination factor, N-terminal domain CH47_3317 PF07497 Rho termination factor, RNA-binding domain CH47_3317 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_3318 PF00085 Thioredoxin CH47_3319 PF00271 Helicase conserved C-terminal domain CH47_3319 PF00270 DEAD/DEAH box helicase CH47_332 PF07972 NrdI Flavodoxin like CH47_3320 PF02541 Ppx/GppA phosphatase family CH47_3321 PF00295 Glycosyl hydrolases family 28 CH47_3322 PF13361 UvrD-like helicase C-terminal domain CH47_3322 PF00580 UvrD/REP helicase N-terminal domain CH47_3325 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_3325 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_3326 PF13953 PapC C-terminal domain CH47_3326 PF13954 PapC N-terminal domain CH47_3326 PF00577 Outer membrane usher protein CH47_3328 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_3328 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_3329 PF01320 Colicin immunity protein / pyocin immunity protein CH47_333 PF00462 Glutaredoxin CH47_3330 PF03513 Cloacin immunity protein CH47_3331 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 CH47_3331 PF03515 Colicin-like bacteriocin tRNase domain CH47_3331 PF09000 Cytotoxic CH47_3334 PF01609 Transposase DDE domain CH47_3334 PF13006 Insertion element 4 transposase N-terminal CH47_3335 PF01609 Transposase DDE domain CH47_3335 PF13006 Insertion element 4 transposase N-terminal CH47_3336 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH47_3336 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH47_3337 PF03466 LysR substrate binding domain CH47_3337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3339 PF00291 Pyridoxal-phosphate dependent enzyme CH47_3339 PF00585 C-terminal regulatory domain of Threonine dehydratase CH47_334 PF02627 Carboxymuconolactone decarboxylase family CH47_3340 PF00920 Dehydratase family CH47_3341 PF01063 Amino-transferase class IV CH47_3343 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_3343 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_3343 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_3344 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH47_3344 PF01078 Magnesium chelatase, subunit ChlI CH47_3345 PF04219 Protein of unknown function, DUF CH47_3346 PF02653 Branched-chain amino acid transport system / permease component CH47_3347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3347 PF03466 LysR substrate binding domain CH47_3348 PF02653 Branched-chain amino acid transport system / permease component CH47_3349 PF00005 ABC transporter CH47_335 PF00392 Bacterial regulatory proteins, gntR family CH47_335 PF00155 Aminotransferase class I and II CH47_3350 PF13407 Periplasmic binding protein domain CH47_3358 PF01177 Asp/Glu/Hydantoin racemase CH47_3359 PF07715 TonB-dependent Receptor Plug Domain CH47_3359 PF00593 TonB dependent receptor CH47_336 PF05957 Bacterial protein of unknown function (DUF883) CH47_3360 PF05958 tRNA (Uracil-5-)-methyltransferase CH47_3361 PF07226 Protein of unknown function (DUF1422) CH47_3362 PF00440 Bacterial regulatory proteins, tetR family CH47_3363 PF03466 LysR substrate binding domain CH47_3363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3364 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH47_3364 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_3365 PF08534 Redoxin CH47_3365 PF00462 Glutaredoxin CH47_3366 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH47_3366 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_3369 PF00529 HlyD membrane-fusion protein of T1SS CH47_337 PF06392 Acid shock protein repeat CH47_3370 PF00664 ABC transporter transmembrane region CH47_3370 PF00005 ABC transporter CH47_3375 PF00593 TonB dependent receptor CH47_3375 PF07715 TonB-dependent Receptor Plug Domain CH47_3376 PF00206 Lyase CH47_3376 PF14698 Argininosuccinate lyase C-terminal CH47_3377 PF00696 Amino acid kinase family CH47_3378 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH47_3378 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH47_3379 PF01546 Peptidase family M20/M25/M40 CH47_3379 PF07687 Peptidase dimerisation domain CH47_3381 PF00311 Phosphoenolpyruvate carboxylase CH47_3383 PF02219 Methylenetetrahydrofolate reductase CH47_3386 PF00742 Homoserine dehydrogenase CH47_3386 PF03447 Homoserine dehydrogenase, NAD binding domain CH47_3386 PF00696 Amino acid kinase family CH47_3387 PF01053 Cys/Met metabolism PLP-dependent enzyme CH47_3388 PF01340 Met Apo-repressor, MetJ CH47_3389 PF01197 Ribosomal protein L31 CH47_3390 PF18074 Primosomal protein N C-terminal domain CH47_3390 PF17764 3′ DNA-binding domain (3′BD) CH47_3390 PF00271 Helicase conserved C-terminal domain CH47_3390 PF00270 DEAD/DEAH box helicase CH47_3390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH47_3391 PF00356 Bacterial regulatory proteins, lacI family CH47_3392 PF05036 Sporulation related domain CH47_3393 PF00227 Proteasome subunit CH47_3394 PF00004 ATPase family associated with various cellular activities (AAA) CH47_3394 PF10431 C-terminal, D2-small domain, of ClpB protein CH47_3394 PF07724 AAA domain (Cdc48 subfamily) CH47_3395 PF01040 UbiA prenyltransferase family CH47_3396 PF03737 Aldolase/RraA CH47_3397 PF06005 Cell division protein ZapB CH47_3398 PF00230 Major intrinsic protein CH47_3399 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_3399 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH47_34 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CH47_34 PF18416 N-acetylglucosamine binding protein domain 2 CH47_340 PF12833 Helix-turn-helix domain CH47_3400 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH47_3401 PF07690 Major Facilitator Superfamily CH47_3402 PF00970 Oxidoreductase FAD-binding domain CH47_3402 PF00175 Oxidoreductase NAD-binding domain CH47_3403 PF05656 Protein of unknown function (DUF805) CH47_3404 PF07305 Protein of unknown function (DUF1454) CH47_3405 PF00121 Triosephosphate isomerase CH47_3407 PF00365 Phosphofructokinase CH47_3408 PF01545 Cation efflux family CH47_3408 PF16916 Dimerisation domain of Zinc Transporter CH47_3409 PF07813 LTXXQ motif family protein CH47_341 PF07690 Major Facilitator Superfamily CH47_3410 PF00486 Transcriptional regulatory protein, C terminal CH47_3410 PF00072 Response regulator receiver domain CH47_3411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3411 PF00672 HAMP domain CH47_3411 PF16527 Two-component sensor protein CpxA, periplasmic domain CH47_3411 PF00512 His Kinase A (phospho-acceptor) domain CH47_3412 PF02805 Metal binding domain of Ada CH47_3412 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH47_3412 PF12833 Helix-turn-helix domain CH47_3412 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH47_3413 PF00588 SpoU rRNA Methylase family CH47_3414 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_3414 PF06426 Serine acetyltransferase, N-terminal CH47_3415 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH47_3415 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH47_3416 PF02556 Preprotein translocase subunit SecB CH47_3417 PF00462 Glutaredoxin CH47_3418 PF00581 Rhodanese-like domain CH47_3419 PF01676 Metalloenzyme superfamily CH47_3419 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH47_342 PF09400 Protein of unknown function (DUF2002) CH47_3420 PF01551 Peptidase family M23 CH47_3421 PF04748 Divergent polysaccharide deacetylase CH47_3422 PF08240 Alcohol dehydrogenase GroES-like domain CH47_3422 PF00107 Zinc-binding dehydrogenase CH47_3423 PF00155 Aminotransferase class I and II CH47_3424 PF01370 NAD dependent epimerase/dehydratase family CH47_3425 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH47_3426 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH47_3427 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH47_3428 PF00535 Glycosyl transferase family 2 CH47_3429 PF01467 Cytidylyltransferase-like CH47_3430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH47_3430 PF06827 Zinc finger found in FPG and IleRS CH47_3430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH47_3431 PF00471 Ribosomal protein L33 CH47_3432 PF00830 Ribosomal L28 family CH47_3433 PF04002 RadC-like JAB domain CH47_3434 PF02441 Flavoprotein CH47_3434 PF04127 DNA / pantothenate metabolism flavoprotein CH47_3435 PF00692 dUTPase CH47_3436 PF00440 Bacterial regulatory proteins, tetR family CH47_3437 PF00156 Phosphoribosyl transferase domain CH47_3438 PF03725 3' exoribonuclease family, domain 2 CH47_3438 PF01138 3' exoribonuclease family, domain 1 CH47_3439 PF08340 Domain of unknown function (DUF1732) CH47_3439 PF03755 YicC-like family, N-terminal region CH47_3445 PF17345 Family of unknown function (DUF5375) CH47_3449 PF04606 Ogr/Delta-like zinc finger CH47_345 PF00313 'Cold-shock' DNA-binding domain CH47_3455 PF00563 EAL domain CH47_3455 PF00990 Diguanylate cyclase, GGDEF domain CH47_3455 PF13426 PAS domain CH47_3456 PF00378 Enoyl-CoA hydratase/isomerase CH47_3457 PF07670 Nucleoside recognition CH47_3457 PF07662 Na+ dependent nucleoside transporter C-terminus CH47_3457 PF01773 Na+ dependent nucleoside transporter N-terminus CH47_3459 PF03458 UPF0126 domain CH47_3460 PF03120 NAD-dependent DNA ligase OB-fold domain CH47_3460 PF01653 NAD-dependent DNA ligase adenylation domain CH47_3461 PF00625 Guanylate kinase CH47_3462 PF01192 RNA polymerase Rpb6 CH47_3463 PF13291 ACT domain CH47_3463 PF04607 Region found in RelA / SpoT proteins CH47_3463 PF02824 TGS domain CH47_3464 PF12105 SpoU, rRNA methylase, C-terminal CH47_3464 PF00588 SpoU rRNA Methylase family CH47_3465 PF00270 DEAD/DEAH box helicase CH47_3465 PF17191 RecG wedge domain CH47_3465 PF00271 Helicase conserved C-terminal domain CH47_3466 PF03616 Sodium/glutamate symporter CH47_3467 PF00860 Permease family CH47_3468 PF05170 AsmA family CH47_3474 PF13693 Winged helix-turn-helix DNA-binding CH47_3475 PF00583 Acetyltransferase (GNAT) family CH47_3475 PF09500 Putative thioesterase (yiiD_Cterm) CH47_3476 PF02580 D-Tyr-tRNA(Tyr) deacylase CH47_3477 PF03631 Virulence factor BrkB CH47_3478 PF13419 Haloacid dehalogenase-like hydrolase CH47_3480 PF00120 Glutamine synthetase, catalytic domain CH47_3480 PF03951 Glutamine synthetase, beta-Grasp domain CH47_3481 PF00989 PAS fold CH47_3481 PF00512 His Kinase A (phospho-acceptor) domain CH47_3481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3482 PF00158 Sigma-54 interaction domain CH47_3482 PF00072 Response regulator receiver domain CH47_3482 PF02954 Bacterial regulatory protein, Fis family CH47_3483 PF04055 Radical SAM superfamily CH47_3483 PF06969 HemN C-terminal domain CH47_3484 PF04220 Der GTPase activator (YihI) CH47_3485 PF01926 50S ribosome-binding GTPase CH47_3486 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH47_3486 PF00476 DNA polymerase family A CH47_3486 PF01612 3'-5' exonuclease CH47_3486 PF01367 5'-3' exonuclease, C-terminal SAM fold CH47_3487 PF01323 DSBA-like thioredoxin domain CH47_3488 PF01636 Phosphotransferase enzyme family CH47_3489 PF06288 Protein of unknown function (DUF1040) CH47_349 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_3490 PF12804 MobA-like NTP transferase domain CH47_3491 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH47_3496 PF00392 Bacterial regulatory proteins, gntR family CH47_3496 PF07729 FCD domain CH47_3497 PF00356 Bacterial regulatory proteins, lacI family CH47_3498 PF07690 Major Facilitator Superfamily CH47_3499 PF00294 pfkB family carbohydrate kinase CH47_350 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3500 PF13407 Periplasmic binding protein domain CH47_3501 PF02653 Branched-chain amino acid transport system / permease component CH47_3502 PF00005 ABC transporter CH47_3503 PF05025 RbsD / FucU transport protein family CH47_3504 PF02705 K+ potassium transporter CH47_3505 PF12592 Protein of unknown function (DUF3763) CH47_3505 PF17868 AAA lid domain CH47_3505 PF07728 AAA domain (dynein-related subfamily) CH47_3506 PF05762 VWA domain containing CoxE-like protein CH47_3508 PF03590 Aspartate-ammonia ligase CH47_3509 PF01037 Lrp/AsnC ligand binding domain CH47_351 PF00528 Binding-protein-dependent transport system inner membrane component CH47_351 PF12911 N-terminal TM domain of oligopeptide transport permease C CH47_3510 PF00258 Flavodoxin CH47_3511 PF13932 GidA associated domain CH47_3511 PF01134 Glucose inhibited division protein A CH47_3512 PF02527 rRNA small subunit methyltransferase G CH47_3513 PF03899 ATP synthase I chain CH47_3514 PF00119 ATP synthase A chain CH47_3515 PF00137 ATP synthase subunit C CH47_3516 PF00430 ATP synthase B/B' CF(0) CH47_3517 PF00213 ATP synthase delta (OSCP) subunit CH47_3518 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_3518 PF00306 ATP synthase alpha/beta chain, C terminal domain CH47_3518 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH47_3519 PF00231 ATP synthase CH47_352 PF00005 ABC transporter CH47_3520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_3520 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH47_3521 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH47_3521 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH47_3522 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_3522 PF12804 MobA-like NTP transferase domain CH47_3523 PF01380 SIS domain CH47_3525 PF12849 PBP superfamily domain CH47_3526 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3527 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3528 PF00005 ABC transporter CH47_3529 PF01895 PhoU domain CH47_353 PF00005 ABC transporter CH47_3531 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_3532 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3533 PF13419 Haloacid dehalogenase-like hydrolase CH47_3534 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3535 PF00860 Permease family CH47_3537 PF00196 Bacterial regulatory proteins, luxR family CH47_3537 PF00072 Response regulator receiver domain CH47_3538 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3538 PF00989 PAS fold CH47_3538 PF00512 His Kinase A (phospho-acceptor) domain CH47_3539 PF03358 NADPH-dependent FMN reductase CH47_3540 PF00672 HAMP domain CH47_3540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_3540 PF02203 Tar ligand binding domain homologue CH47_3541 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3542 PF09383 NIL domain CH47_3542 PF00005 ABC transporter CH47_3544 PF07055 Enoyl reductase FAD binding domain CH47_3544 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH47_3544 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH47_3545 PF10396 GTP-binding protein TrmE N-terminus CH47_3545 PF12631 MnmE helical domain CH47_3545 PF01926 50S ribosome-binding GTPase CH47_3546 PF02096 60Kd inner membrane protein CH47_3546 PF14849 YidC periplasmic domain CH47_3547 PF01809 Putative membrane protein insertion efficiency factor CH47_3548 PF00825 Ribonuclease P CH47_3549 PF00468 Ribosomal protein L34 CH47_355 PF00547 Urease, gamma subunit CH47_3550 PF00308 Bacterial dnaA protein CH47_3550 PF08299 Bacterial dnaA protein helix-turn-helix CH47_3550 PF11638 DnaA N-terminal domain CH47_3551 PF02767 DNA polymerase III beta subunit, central domain CH47_3551 PF00712 DNA polymerase III beta subunit, N-terminal domain CH47_3551 PF02768 DNA polymerase III beta subunit, C-terminal domain CH47_3552 PF02463 RecF/RecN/SMC N terminal domain CH47_3553 PF18053 DNA gyrase B subunit insert domain CH47_3553 PF01751 Toprim domain CH47_3553 PF00986 DNA gyrase B subunit, carboxyl terminus CH47_3553 PF00204 DNA gyrase B CH47_3553 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3555 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH47_3556 PF00291 Pyridoxal-phosphate dependent enzyme CH47_3556 PF13291 ACT domain CH47_3557 PF08348 YheO-like PAS domain CH47_3557 PF13309 HTH domain CH47_3558 PF00145 C-5 cytosine-specific DNA methylase CH47_3558 PF18284 DNA methylase N-terminal domain CH47_3559 PF03852 DNA mismatch endonuclease Vsr CH47_356 PF00699 Urease beta subunit CH47_3560 PF09217 Restriction endonuclease EcoRII, N-terminal CH47_3560 PF09019 EcoRII C terminal CH47_3561 PF12566 Protein of unknown function (DUF3748) CH47_3561 PF07676 WD40-like Beta Propeller Repeat CH47_3562 PF07119 Protein of unknown function (DUF1375) CH47_3563 PF00011 Hsp20/alpha crystallin family CH47_3565 PF00011 Hsp20/alpha crystallin family CH47_3566 PF02080 TrkA-C domain CH47_3566 PF06826 Predicted Permease Membrane Region CH47_3567 PF00155 Aminotransferase class I and II CH47_3568 PF00128 Alpha amylase, catalytic domain CH47_3569 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_3569 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_357 PF01979 Amidohydrolase family CH47_357 PF00449 Urease alpha-subunit, N-terminal domain CH47_3570 PF07690 Major Facilitator Superfamily CH47_3572 PF00691 OmpA family CH47_3572 PF13488 Glycine zipper CH47_3575 PF00583 Acetyltransferase (GNAT) family CH47_3576 PF03352 Methyladenine glycosylase CH47_3577 PF02091 Glycyl-tRNA synthetase alpha subunit CH47_3578 PF02092 Glycyl-tRNA synthetase beta subunit CH47_3578 PF05746 DALR anticodon binding domain CH47_3579 PF11254 Protein of unknown function (DUF3053) CH47_358 PF02814 UreE urease accessory protein, N-terminal domain CH47_358 PF05194 UreE urease accessory protein, C-terminal domain CH47_3581 PF02378 Phosphotransferase system, EIIC CH47_3581 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_3581 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH47_3582 PF01232 Mannitol dehydrogenase Rossmann domain CH47_3582 PF08125 Mannitol dehydrogenase C-terminal domain CH47_3584 PF05068 Mannitol repressor CH47_3585 PF00155 Aminotransferase class I and II CH47_3585 PF00392 Bacterial regulatory proteins, gntR family CH47_3586 PF10928 Protein of unknown function (DUF2810) CH47_3587 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CH47_3588 PF01850 PIN domain CH47_3589 PF03475 3-alpha domain CH47_3589 PF03473 MOSC domain CH47_359 PF01730 UreF CH47_3590 PF00672 HAMP domain CH47_3590 PF02203 Tar ligand binding domain homologue CH47_3590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_3591 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH47_3591 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH47_3592 PF02634 FdhD/NarQ family CH47_3593 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_3593 PF00384 Molybdopterin oxidoreductase CH47_3593 PF01568 Molydopterin dinucleotide binding domain CH47_3594 PF01568 Molydopterin dinucleotide binding domain CH47_3594 PF00384 Molybdopterin oxidoreductase CH47_3594 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_3595 PF13247 4Fe-4S dicluster domain CH47_3595 PF09163 Formate dehydrogenase N, transmembrane CH47_3596 PF01292 Prokaryotic cytochrome b561 CH47_3597 PF04216 Protein involved in formate dehydrogenase formation CH47_3598 PF12390 Selenocysteine synthase N terminal CH47_3598 PF03841 L-seryl-tRNA selenium transferase CH47_3599 PF09106 Elongation factor SelB, winged helix CH47_3599 PF03144 Elongation factor Tu domain 2 CH47_3599 PF00009 Elongation factor Tu GTP binding domain CH47_3599 PF09107 Elongation factor SelB, winged helix CH47_36 PF01478 Type IV leader peptidase family CH47_36 PF06750 Bacterial Peptidase A24 N-terminal domain CH47_360 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH47_3601 PF07804 HipA-like C-terminal domain CH47_3601 PF13657 HipA N-terminal domain CH47_3602 PF07690 Major Facilitator Superfamily CH47_3604 PF01757 Acyltransferase family CH47_3606 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_3606 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_3607 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH47_3607 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH47_3609 PF13407 Periplasmic binding protein domain CH47_361 PF01774 UreD urease accessory protein CH47_3610 PF00005 ABC transporter CH47_3611 PF02653 Branched-chain amino acid transport system / permease component CH47_3612 PF12833 Helix-turn-helix domain CH47_3614 PF00589 Phage integrase family CH47_3614 PF14659 Phage integrase, N-terminal SAM-like domain CH47_3614 PF13356 Arm DNA-binding domain CH47_3618 PF13784 Fic/DOC family N-terminal CH47_3618 PF02661 Fic/DOC family CH47_362 PF03253 Urea transporter CH47_3624 PF00356 Bacterial regulatory proteins, lacI family CH47_3625 PF00480 ROK family CH47_3626 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH47_3627 PF02378 Phosphotransferase system, EIIC CH47_3628 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH47_3629 PF02378 Phosphotransferase system, EIIC CH47_363 PF03824 High-affinity nickel-transport protein CH47_3630 PF02264 LamB porin CH47_3632 PF00232 Glycosyl hydrolase family 1 CH47_3633 PF01238 Phosphomannose isomerase type I CH47_3634 PF01175 Urocanase Rossmann-like domain CH47_3634 PF17392 Urocanase C-terminal domain CH47_3634 PF17391 Urocanase N-terminal domain CH47_3635 PF00221 Aromatic amino acid lyase CH47_3636 PF00324 Amino acid permease CH47_3637 PF12146 Serine aminopeptidase, S33 CH47_3638 PF02566 OsmC-like protein CH47_3639 PF08019 Phosphoethanolamine transferase EptA/EptB CH47_3639 PF00884 Sulfatase CH47_364 PF06411 HdeA/HdeB family CH47_3640 PF00072 Response regulator receiver domain CH47_3640 PF00196 Bacterial regulatory proteins, luxR family CH47_3641 PF07730 Histidine kinase CH47_3641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3641 PF05231 MASE1 CH47_3642 PF07690 Major Facilitator Superfamily CH47_3644 PF13018 Extended Signal Peptide of Type V secretion system CH47_3644 PF13332 Hemagglutinin repeat CH47_3644 PF05860 haemagglutination activity domain CH47_3644 PF04829 Pre-toxin domain with VENN motif CH47_3645 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH47_3645 PF17287 POTRA domain CH47_3645 PF08479 POTRA domain, ShlB-type CH47_3646 PF15526 Novel toxin 21 CH47_3646 PF04829 Pre-toxin domain with VENN motif CH47_3646 PF05594 Haemagluttinin repeat CH47_3646 PF13332 Hemagglutinin repeat CH47_3646 PF05860 haemagglutination activity domain CH47_3647 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_3648 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3649 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3649 PF12911 N-terminal TM domain of oligopeptide transport permease C CH47_365 PF07885 Ion channel CH47_365 PF02254 TrkA-N domain CH47_3650 PF00005 ABC transporter CH47_3650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_3651 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_3651 PF00005 ABC transporter CH47_3652 PF11658 Cellulose biosynthesis protein BcsG CH47_3653 PF11120 Cellulose biosynthesis protein BcsF CH47_3654 PF10995 Cellulose biosynthesis GIL CH47_3657 PF06564 Cellulose biosynthesis protein BcsQ CH47_3658 PF00535 Glycosyl transferase family 2 CH47_3658 PF03552 Cellulose synthase CH47_3658 PF07238 PilZ domain CH47_3659 PF03170 Bacterial cellulose synthase subunit CH47_366 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH47_3660 PF01270 Glycosyl hydrolases family 8 CH47_3661 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CH47_3662 PF00563 EAL domain CH47_3662 PF00990 Diguanylate cyclase, GGDEF domain CH47_3662 PF00672 HAMP domain CH47_3662 PF17154 Gammaproteobacterial periplasmic sensor domain CH47_3663 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH47_3664 PF06917 Periplasmic pectate lyase CH47_3666 PF00375 Sodium:dicarboxylate symporter family CH47_3667 PF00675 Insulinase (Peptidase family M16) CH47_3667 PF05193 Peptidase M16 inactive domain CH47_3668 PF00294 pfkB family carbohydrate kinase CH47_3669 PF01361 Tautomerase enzyme CH47_367 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH47_3670 PF00563 EAL domain CH47_3671 PF05170 AsmA family CH47_3672 PF02611 CDP-diacylglycerol pyrophosphatase CH47_3673 PF03631 Virulence factor BrkB CH47_3674 PF03797 Autotransporter beta-domain CH47_3675 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_3675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH47_3676 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH47_3677 PF01432 Peptidase family M3 CH47_3678 PF04445 Putative SAM-dependent methyltransferase CH47_3679 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH47_3679 PF08548 Peptidase M10 serralysin C terminal CH47_368 PF00248 Aldo/keto reductase family CH47_3680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH47_3680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH47_3681 PF00582 Universal stress protein family CH47_3682 PF10625 Universal stress protein B (UspB) CH47_3683 PF01384 Phosphate transporter family CH47_3685 PF00375 Sodium:dicarboxylate symporter family CH47_3688 PF05034 Methylaspartate ammonia-lyase N-terminus CH47_3688 PF07476 Methylaspartate ammonia-lyase C-terminus CH47_3689 PF06368 Methylaspartate mutase E chain (MutE) CH47_369 PF07995 Glucose / Sorbosone dehydrogenase CH47_3690 PF13941 MutL protein CH47_3691 PF02310 B12 binding domain CH47_3692 PF00288 GHMP kinases N terminal domain CH47_3693 PF10414 Sirohaem synthase dimerisation region CH47_3693 PF14824 Sirohaem biosynthesis protein central CH47_3693 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_3694 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3694 PF03466 LysR substrate binding domain CH47_3695 PF05681 Fumarate hydratase (Fumerase) CH47_3695 PF05683 Fumarase C-terminus CH47_3696 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH47_3698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3698 PF03466 LysR substrate binding domain CH47_3699 PF07690 Major Facilitator Superfamily CH47_370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH47_3701 PF00171 Aldehyde dehydrogenase family CH47_3702 PF04962 KduI/IolB family CH47_3704 PF00294 pfkB family carbohydrate kinase CH47_3705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_3705 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_3705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_3706 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH47_3706 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH47_3707 PF01261 Xylose isomerase-like TIM barrel CH47_3708 PF00583 Acetyltransferase (GNAT) family CH47_3709 PF17954 Quercetinase C-terminal cupin domain CH47_3709 PF02678 Pirin CH47_371 PF02378 Phosphotransferase system, EIIC CH47_3710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_3710 PF00356 Bacterial regulatory proteins, lacI family CH47_3711 PF02447 GntP family permease CH47_3712 PF01202 Shikimate kinase CH47_3713 PF01914 MarC family integral membrane protein CH47_3714 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH47_3714 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH47_3715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_3715 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_3715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_3716 PF03306 Alpha-acetolactate decarboxylase CH47_3717 PF06580 Histidine kinase CH47_3717 PF07694 5TMR of 5TMR-LYT CH47_3718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3718 PF03466 LysR substrate binding domain CH47_3719 PF00128 Alpha amylase, catalytic domain CH47_3719 PF02806 Alpha amylase, C-terminal all-beta domain CH47_3719 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH47_372 PF00232 Glycosyl hydrolase family 1 CH47_3720 PF00128 Alpha amylase, catalytic domain CH47_3720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH47_3720 PF18390 Glycogen debranching enzyme C-terminal domain CH47_3721 PF00483 Nucleotidyl transferase CH47_3722 PF00534 Glycosyl transferases group 1 CH47_3722 PF08323 Starch synthase catalytic domain CH47_3723 PF00343 Carbohydrate phosphorylase CH47_3724 PF01266 FAD dependent oxidoreductase CH47_3724 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH47_3726 PF00672 HAMP domain CH47_3726 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_3726 PF00512 His Kinase A (phospho-acceptor) domain CH47_3727 PF00072 Response regulator receiver domain CH47_3727 PF00486 Transcriptional regulatory protein, C terminal CH47_3728 PF03449 Transcription elongation factor, N-terminal CH47_3728 PF01272 Transcription elongation factor, GreA/GreB, C-term CH47_373 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH47_3731 PF09371 Tex-like protein N-terminal domain CH47_3731 PF16921 Tex protein YqgF-like domain CH47_3731 PF17674 HHH domain CH47_3731 PF00575 S1 RNA binding domain CH47_3732 PF04023 FeoA domain CH47_3733 PF07664 Ferrous iron transport protein B C terminus CH47_3733 PF02421 Ferrous iron transport protein B CH47_3733 PF07670 Nucleoside recognition CH47_3733 PF17910 FeoB cytosolic helical domain CH47_3734 PF09012 FeoC like transcriptional regulator CH47_3735 PF07338 Protein of unknown function (DUF1471) CH47_3736 PF00561 alpha/beta hydrolase fold CH47_3737 PF00156 Phosphoribosyl transferase domain CH47_3738 PF01521 Iron-sulphur cluster biosynthesis CH47_3738 PF01106 NifU-like domain CH47_3739 PF02446 4-alpha-glucanotransferase CH47_374 PF12833 Helix-turn-helix domain CH47_374 PF07883 Cupin domain CH47_3740 PF00343 Carbohydrate phosphorylase CH47_3741 PF17874 MalT-like TPR region CH47_3741 PF00196 Bacterial regulatory proteins, luxR family CH47_3742 PF00581 Rhodanese-like domain CH47_3743 PF01694 Rhomboid family CH47_3743 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH47_3744 PF00455 DeoR C terminal sensor domain CH47_3744 PF08220 DeoR-like helix-turn-helix domain CH47_3745 PF01293 Phosphoenolpyruvate carboxykinase CH47_3746 PF01430 Hsp33 protein CH47_3747 PF01479 S4 domain CH47_3748 PF13419 Haloacid dehalogenase-like hydrolase CH47_3749 PF07095 Intracellular growth attenuator protein IgaA CH47_375 PF04794 YdjC-like protein CH47_3750 PF00293 NUDIX domain CH47_3751 PF00905 Penicillin binding protein transpeptidase domain CH47_3751 PF17092 Penicillin-binding protein OB-like domain CH47_3751 PF00912 Transglycosylase CH47_3756 PF03958 Bacterial type II/III secretion system short domain CH47_3756 PF00263 Bacterial type II and III secretion system protein CH47_3757 PF01202 Shikimate kinase CH47_3758 PF01761 3-dehydroquinate synthase CH47_3759 PF05036 Sporulation related domain CH47_376 PF01740 STAS domain CH47_376 PF00916 Sulfate permease family CH47_3760 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH47_3761 PF00834 Ribulose-phosphate 3 epimerase family CH47_3762 PF13419 Haloacid dehalogenase-like hydrolase CH47_3763 PF00579 tRNA synthetases class I (W and Y) CH47_3764 PF10414 Sirohaem synthase dimerisation region CH47_3764 PF14824 Sirohaem biosynthesis protein central CH47_3764 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_3765 PF01226 Formate/nitrite transporter CH47_3766 PF13806 Rieske-like [2Fe-2S] domain CH47_3767 PF04324 BFD-like [2Fe-2S] binding domain CH47_3767 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH47_3767 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH47_3767 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH47_3767 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_3768 PF07969 Amidohydrolase family CH47_3769 PF07690 Major Facilitator Superfamily CH47_377 PF00589 Phage integrase family CH47_377 PF13356 Arm DNA-binding domain CH47_3770 PF00356 Bacterial regulatory proteins, lacI family CH47_3771 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH47_3771 PF02056 Family 4 glycosyl hydrolase CH47_3772 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH47_3773 PF05872 Bacterial protein of unknown function (DUF853) CH47_3774 PF00117 Glutamine amidotransferase class-I CH47_3775 PF00202 Aminotransferase class-III CH47_3776 PF12805 FUSC-like inner membrane protein yccS CH47_3777 PF00027 Cyclic nucleotide-binding domain CH47_3777 PF13545 Crp-like helix-turn-helix domain CH47_3778 PF02566 OsmC-like protein CH47_3779 PF00485 Phosphoribulokinase / Uridine kinase family CH47_378 PF01548 Transposase CH47_378 PF02371 Transposase IS116/IS110/IS902 family CH47_3780 PF06794 Uncharacterised protein family (UPF0270) CH47_3781 PF00561 alpha/beta hydrolase fold CH47_3782 PF01810 LysE type translocator CH47_3783 PF02567 Phenazine biosynthesis-like protein CH47_3784 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH47_3785 PF00005 ABC transporter CH47_3786 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3787 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH47_3789 PF00535 Glycosyl transferase family 2 CH47_3790 PF00005 ABC transporter CH47_3790 PF12848 ABC transporter CH47_3791 PF02525 Flavodoxin-like fold CH47_3792 PF02254 TrkA-N domain CH47_3792 PF00999 Sodium/hydrogen exchanger family CH47_3793 PF09526 Probable metal-binding protein (DUF2387) CH47_3794 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH47_3795 PF04102 SlyX CH47_3796 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH47_3796 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH47_3797 PF13309 HTH domain CH47_3797 PF08348 YheO-like PAS domain CH47_3798 PF02635 DsrE/DsrF-like family CH47_3799 PF02635 DsrE/DsrF-like family CH47_3800 PF04077 DsrH like protein CH47_3801 PF00164 Ribosomal protein S12/S23 CH47_3802 PF00177 Ribosomal protein S7p/S5e CH47_3803 PF03144 Elongation factor Tu domain 2 CH47_3803 PF00679 Elongation factor G C-terminus CH47_3803 PF14492 Elongation Factor G, domain II CH47_3803 PF03764 Elongation factor G, domain IV CH47_3803 PF00009 Elongation factor Tu GTP binding domain CH47_3804 PF03143 Elongation factor Tu C-terminal domain CH47_3804 PF03144 Elongation factor Tu domain 2 CH47_3804 PF00009 Elongation factor Tu GTP binding domain CH47_3805 PF04324 BFD-like [2Fe-2S] binding domain CH47_3807 PF00210 Ferritin-like domain CH47_3808 PF00338 Ribosomal protein S10p/S20e CH47_3809 PF00297 Ribosomal protein L3 CH47_381 PF06183 DinI-like family CH47_3810 PF00573 Ribosomal protein L4/L1 family CH47_3811 PF00276 Ribosomal protein L23 CH47_3812 PF03947 Ribosomal Proteins L2, C-terminal domain CH47_3812 PF00181 Ribosomal Proteins L2, RNA binding domain CH47_3813 PF00203 Ribosomal protein S19 CH47_3814 PF00237 Ribosomal protein L22p/L17e CH47_3815 PF07650 KH domain CH47_3815 PF00189 Ribosomal protein S3, C-terminal domain CH47_3816 PF00252 Ribosomal protein L16p/L10e CH47_3817 PF00831 Ribosomal L29 protein CH47_3818 PF00366 Ribosomal protein S17 CH47_3819 PF00238 Ribosomal protein L14p/L23e CH47_3820 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH47_3820 PF00467 KOW motif CH47_3821 PF00281 Ribosomal protein L5 CH47_3821 PF00673 ribosomal L5P family C-terminus CH47_3822 PF00253 Ribosomal protein S14p/S29e CH47_3823 PF00410 Ribosomal protein S8 CH47_3824 PF00347 Ribosomal protein L6 CH47_3825 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH47_3826 PF00333 Ribosomal protein S5, N-terminal domain CH47_3826 PF03719 Ribosomal protein S5, C-terminal domain CH47_3827 PF00327 Ribosomal protein L30p/L7e CH47_3828 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH47_3829 PF00344 SecY translocase CH47_3830 PF00444 Ribosomal protein L36 CH47_3831 PF00416 Ribosomal protein S13/S18 CH47_3832 PF00411 Ribosomal protein S11 CH47_3833 PF01479 S4 domain CH47_3833 PF00163 Ribosomal protein S4/S9 N-terminal domain CH47_3834 PF01000 RNA polymerase Rpb3/RpoA insert domain CH47_3834 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH47_3834 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH47_3835 PF01196 Ribosomal protein L17 CH47_3836 PF09350 Domain of unknown function (DUF1992) CH47_3837 PF13411 MerR HTH family regulatory protein CH47_3838 PF03889 Alternative ribosome-rescue factor A CH47_3839 PF01741 Large-conductance mechanosensitive channel, MscL CH47_384 PF17345 Family of unknown function (DUF5375) CH47_3840 PF02080 TrkA-C domain CH47_3840 PF02254 TrkA-N domain CH47_3841 PF01029 NusB family CH47_3841 PF01189 16S rRNA methyltransferase RsmB/F CH47_3842 PF00551 Formyl transferase CH47_3842 PF02911 Formyl transferase, C-terminal domain CH47_3843 PF01327 Polypeptide deformylase CH47_3844 PF02481 DNA recombination-mediator protein A CH47_3844 PF17782 DprA winged helix domain CH47_3845 PF04361 Protein of unknown function (DUF494) CH47_3846 PF01396 Topoisomerase DNA binding C4 zinc finger CH47_3847 PF01300 Telomere recombination CH47_3848 PF08501 Shikimate dehydrogenase substrate binding domain CH47_3848 PF01488 Shikimate / quinate 5-dehydrogenase CH47_3848 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH47_3849 PF00132 Bacterial transferase hexapeptide (six repeats) CH47_3858 PF04204 Homoserine O-succinyltransferase CH47_3859 PF01274 Malate synthase CH47_3860 PF00463 Isocitrate lyase family CH47_3861 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH47_3862 PF09339 IclR helix-turn-helix domain CH47_3862 PF01614 Bacterial transcriptional regulator CH47_3863 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH47_3863 PF00809 Pterin binding enzyme CH47_3863 PF02607 B12 binding domain CH47_3863 PF02574 Homocysteine S-methyltransferase CH47_3863 PF02310 B12 binding domain CH47_3865 PF00696 Amino acid kinase family CH47_3865 PF01842 ACT domain CH47_3866 PF00342 Phosphoglucose isomerase CH47_3867 PF06146 Phosphate-starvation-inducible E CH47_3868 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3869 PF14785 Maltose transport system permease protein MalF P2 domain CH47_3869 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3870 PF01547 Bacterial extracellular solute-binding protein CH47_3871 PF17912 MalK OB fold domain CH47_3871 PF00005 ABC transporter CH47_3872 PF02264 LamB porin CH47_3873 PF07148 Maltose operon periplasmic protein precursor (MalM) CH47_3875 PF04345 Chorismate lyase CH47_3876 PF01040 UbiA prenyltransferase family CH47_3877 PF01553 Acyltransferase CH47_3878 PF01219 Prokaryotic diacylglycerol kinase CH47_3879 PF01726 LexA DNA binding domain CH47_3879 PF00717 Peptidase S24-like CH47_3880 PF05532 CsbD-like CH47_3881 PF01475 Ferric uptake regulator family CH47_3888 PF10065 Uncharacterized conserved protein (DUF2303) CH47_3893 PF00717 Peptidase S24-like CH47_3893 PF01381 Helix-turn-helix CH47_3897 PF03354 Phage Terminase CH47_39 PF03934 Type II secretion system (T2SS), protein K CH47_390 PF04606 Ogr/Delta-like zinc finger CH47_3901 PF06147 Protein of unknown function (DUF968) CH47_3902 PF06530 Phage antitermination protein Q CH47_3903 PF01810 LysE type translocator CH47_3904 PF13404 AsnC-type helix-turn-helix domain CH47_3904 PF01037 Lrp/AsnC ligand binding domain CH47_3908 PF00959 Phage lysozyme CH47_3911 PF10549 ORF11CD3 domain CH47_3911 PF09669 Phage regulatory protein Rha (Phage_pRha) CH47_3929 PF17482 Phage tail sheath C-terminal domain CH47_3929 PF04984 Phage tail sheath protein subtilisin-like domain CH47_393 PF00589 Phage integrase family CH47_393 PF13356 Arm DNA-binding domain CH47_3940 PF07484 Phage Tail Collar Domain CH47_3941 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH47_3944 PF01207 Dihydrouridine synthase (Dus) CH47_3945 PF09583 Phage shock protein G (Phageshock_PspG) CH47_3947 PF08240 Alcohol dehydrogenase GroES-like domain CH47_3947 PF00107 Zinc-binding dehydrogenase CH47_3948 PF00772 DnaB-like helicase N terminal domain CH47_3948 PF03796 DnaB-like helicase C terminal domain CH47_3949 PF00842 Alanine racemase, C-terminal domain CH47_3949 PF01168 Alanine racemase, N-terminal domain CH47_3950 PF00155 Aminotransferase class I and II CH47_3951 PF04237 YjbR CH47_3952 PF17755 UvrA DNA-binding domain CH47_3952 PF17760 UvrA interaction domain CH47_3952 PF00005 ABC transporter CH47_3953 PF00436 Single-strand binding protein family CH47_3954 PF07804 HipA-like C-terminal domain CH47_3954 PF13657 HipA N-terminal domain CH47_3955 PF01381 Helix-turn-helix CH47_3957 PF00860 Permease family CH47_3958 PF00999 Sodium/hydrogen exchanger family CH47_3959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3959 PF03466 LysR substrate binding domain CH47_3960 PF03788 LrgA family CH47_3962 PF00005 ABC transporter CH47_3963 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3964 PF00528 Binding-protein-dependent transport system inner membrane component CH47_3965 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_3967 PF03279 Bacterial lipid A biosynthesis acyltransferase CH47_3971 PF00313 'Cold-shock' DNA-binding domain CH47_3972 PF00313 'Cold-shock' DNA-binding domain CH47_3973 PF05433 Glycine zipper 2TM domain CH47_3974 PF00990 Diguanylate cyclase, GGDEF domain CH47_3974 PF00072 Response regulator receiver domain CH47_3975 PF02954 Bacterial regulatory protein, Fis family CH47_3976 PF01207 Dihydrouridine synthase (Dus) CH47_3978 PF00474 Sodium:solute symporter family CH47_3979 PF06196 Protein of unknown function (DUF997) CH47_3980 PF00289 Biotin carboxylase, N-terminal domain CH47_3980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH47_3980 PF02785 Biotin carboxylase C-terminal domain CH47_3981 PF00364 Biotin-requiring enzyme CH47_3982 PF01220 Dehydroquinase class II CH47_3983 PF01794 Ferric reductase like transmembrane component CH47_3984 PF00174 Oxidoreductase molybdopterin binding domain CH47_3985 PF00107 Zinc-binding dehydrogenase CH47_3985 PF08240 Alcohol dehydrogenase GroES-like domain CH47_3986 PF00990 Diguanylate cyclase, GGDEF domain CH47_3986 PF17157 Gammaproteobacterial periplasmic sensor domain CH47_3986 PF00563 EAL domain CH47_3989 PF04085 rod shape-determining protein MreC CH47_3990 PF04093 rod shape-determining protein MreD CH47_3991 PF02545 Maf-like protein CH47_3992 PF00575 S1 RNA binding domain CH47_3992 PF10150 Ribonuclease E/G family CH47_3993 PF13502 AsmA-like C-terminal region CH47_3993 PF13116 Protein of unknown function CH47_3994 PF00795 Carbon-nitrogen hydrolase CH47_3995 PF01523 Putative modulator of DNA gyrase CH47_3996 PF03466 LysR substrate binding domain CH47_3996 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_3997 PF07869 Protein of unknown function (DUF1656) CH47_3998 PF13533 Biotin-lipoyl like CH47_3999 PF04632 Fusaric acid resistance protein family CH47_4 PF01750 Hydrogenase maturation protease CH47_40 PF07963 Prokaryotic N-terminal methylation motif CH47_40 PF11612 Type II secretion system (T2SS), protein J CH47_4000 PF00171 Aldehyde dehydrogenase family CH47_4002 PF01337 Barstar (barnase inhibitor) CH47_4003 PF04751 Protein of unknown function (DUF615) CH47_4004 PF01523 Putative modulator of DNA gyrase CH47_4005 PF07361 Cytochrome b562 CH47_4006 PF14760 Rnk N-terminus CH47_4006 PF01272 Transcription elongation factor, GreA/GreB, C-term CH47_4012 PF01979 Amidohydrolase family CH47_4013 PF03841 L-seryl-tRNA selenium transferase CH47_4014 PF07071 KDGP aldolase CH47_4015 PF10282 Lactonase, 7-bladed beta-propeller CH47_4016 PF05043 Mga helix-turn-helix domain CH47_4016 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_4016 PF00874 PRD domain CH47_4016 PF08279 HTH domain CH47_4017 PF00690 Cation transporter/ATPase, N-terminus CH47_4017 PF00689 Cation transporting ATPase, C-terminus CH47_4018 PF00356 Bacterial regulatory proteins, lacI family CH47_4019 PF00367 phosphotransferase system, EIIB CH47_4019 PF02378 Phosphotransferase system, EIIC CH47_4020 PF00128 Alpha amylase, catalytic domain CH47_4020 PF11941 Domain of unknown function (DUF3459) CH47_4023 PF04168 A predicted alpha-helical domain with a conserved ER motif. CH47_4023 PF14403 Circularly permuted ATP-grasp type 2 CH47_4026 PF01042 Endoribonuclease L-PSP CH47_4027 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH47_4027 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH47_4028 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH47_4028 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH47_4030 PF01548 Transposase CH47_4030 PF02371 Transposase IS116/IS110/IS902 family CH47_4031 PF13276 HTH-like domain CH47_4031 PF00665 Integrase core domain CH47_4031 PF13333 Integrase core domain CH47_4032 PF01527 Transposase CH47_4033 PF01548 Transposase CH47_4033 PF02371 Transposase IS116/IS110/IS902 family CH47_4034 PF00381 PTS HPr component phosphorylation site CH47_4035 PF03668 P-loop ATPase protein family CH47_4036 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_4037 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH47_4038 PF04552 Sigma-54, DNA binding domain CH47_4038 PF04963 Sigma-54 factor, core binding domain CH47_4038 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH47_4039 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH47_4039 PF00005 ABC transporter CH47_4040 PF03968 OstA-like protein CH47_4041 PF06835 Lipopolysaccharide-assembly, LptC-related CH47_4043 PF01380 SIS domain CH47_4043 PF00571 CBS domain CH47_4044 PF01699 Sodium/calcium exchanger protein CH47_4045 PF00005 ABC transporter CH47_4046 PF02405 Permease MlaE CH47_4047 PF02470 MlaD protein CH47_4048 PF05494 MlaC protein CH47_4049 PF13466 STAS domain CH47_4050 PF01722 BolA-like protein CH47_4051 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH47_4052 PF13180 PDZ domain CH47_4053 PF00595 PDZ domain CH47_4053 PF13180 PDZ domain CH47_4054 PF06295 Protein of unknown function (DUF1043) CH47_4055 PF03969 AFG1-like ATPase CH47_4056 PF00572 Ribosomal protein L13 CH47_4057 PF00380 Ribosomal protein S9/S16 CH47_4058 PF02798 Glutathione S-transferase, N-terminal domain CH47_4058 PF00043 Glutathione S-transferase, C-terminal domain CH47_4059 PF04386 Stringent starvation protein B CH47_406 PF04917 Bacterial shufflon protein, N-terminal constant region CH47_4061 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_4061 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH47_4062 PF00310 Glutamine amidotransferases class-II CH47_4062 PF01645 Conserved region in glutamate synthase CH47_4062 PF01493 GXGXG motif CH47_4062 PF04898 Glutamate synthase central domain CH47_4063 PF16199 Radical_SAM C-terminal domain CH47_4063 PF04055 Radical SAM superfamily CH47_4064 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH47_4064 PF00512 His Kinase A (phospho-acceptor) domain CH47_4064 PF01627 Hpt domain CH47_4064 PF00989 PAS fold CH47_4064 PF00072 Response regulator receiver domain CH47_4064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_4066 PF00912 Transglycosylase CH47_4067 PF04972 BON domain CH47_4068 PF13580 SIS domain CH47_4069 PF02021 Uncharacterised protein family UPF0102 CH47_4070 PF04348 LppC putative lipoprotein CH47_4071 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH47_4074 PF03466 LysR substrate binding domain CH47_4074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_4075 PF00248 Aldo/keto reductase family CH47_4076 PF00107 Zinc-binding dehydrogenase CH47_4076 PF08240 Alcohol dehydrogenase GroES-like domain CH47_4077 PF02678 Pirin CH47_4077 PF17954 Quercetinase C-terminal cupin domain CH47_4078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_4078 PF03466 LysR substrate binding domain CH47_4079 PF13409 Glutathione S-transferase, N-terminal domain CH47_4080 PF07681 DoxX CH47_4081 PF13997 YqjK-like protein CH47_4082 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH47_4083 PF05957 Bacterial protein of unknown function (DUF883) CH47_4085 PF13721 SecD export protein N-terminal TM region CH47_4086 PF09335 SNARE associated Golgi protein CH47_4089 PF07729 FCD domain CH47_4089 PF00392 Bacterial regulatory proteins, gntR family CH47_409 PF00589 Phage integrase family CH47_409 PF13356 Arm DNA-binding domain CH47_4090 PF07690 Major Facilitator Superfamily CH47_4091 PF02614 Glucuronate isomerase CH47_4092 PF08125 Mannitol dehydrogenase C-terminal domain CH47_4092 PF01232 Mannitol dehydrogenase Rossmann domain CH47_4093 PF08666 SAF domain CH47_4093 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH47_4094 PF10688 Bacterial inner membrane protein CH47_4095 PF00375 Sodium:dicarboxylate symporter family CH47_4096 PF03741 Integral membrane protein TerC family CH47_4097 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH47_4098 PF01863 Protein of unknown function DUF45 CH47_4099 PF03797 Autotransporter beta-domain CH47_41 PF07963 Prokaryotic N-terminal methylation motif CH47_41 PF02501 Type II secretion system (T2SS), protein I CH47_410 PF01668 SmpB protein CH47_4100 PF05175 Methyltransferase small domain CH47_4101 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_4101 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH47_4102 PF00892 EamA-like transporter family CH47_4103 PF03729 Short repeat of unknown function (DUF308) CH47_4104 PF07690 Major Facilitator Superfamily CH47_4105 PF01638 HxlR-like helix-turn-helix CH47_4106 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH47_4107 PF13520 Amino acid permease CH47_4108 PF04960 Glutaminase CH47_4109 PF02378 Phosphotransferase system, EIIC CH47_4109 PF00367 phosphotransferase system, EIIB CH47_411 PF03364 Polyketide cyclase / dehydrase and lipid transport CH47_4110 PF13580 SIS domain CH47_4111 PF01418 Helix-turn-helix domain, rpiR family CH47_4111 PF01380 SIS domain CH47_4112 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH47_4112 PF00933 Glycosyl hydrolase family 3 N terminal domain CH47_4114 PF07075 Protein of unknown function (DUF1343) CH47_4116 PF00140 Sigma-70 factor, region 1.2 CH47_4116 PF03979 Sigma-70 factor, region 1.1 CH47_4116 PF04546 Sigma-70, non-essential region CH47_4116 PF04539 Sigma-70 region 3 CH47_4116 PF04542 Sigma-70 region 2 CH47_4116 PF04545 Sigma-70, region 4 CH47_4117 PF08278 DNA primase DnaG DnaB-binding CH47_4117 PF01807 CHC2 zinc finger CH47_4117 PF08275 DNA primase catalytic core, N-terminal domain CH47_4117 PF10410 DnaB-helicase binding domain of primase CH47_4118 PF01165 Ribosomal protein S21 CH47_4119 PF00814 Glycoprotease family CH47_412 PF03658 RnfH family Ubiquitin CH47_4120 PF02660 Glycerol-3-phosphate acyltransferase CH47_4121 PF02152 Dihydroneopterin aldolase CH47_4122 PF02673 Bacitracin resistance protein BacA CH47_4123 PF12627 Probable RNA and SrmB- binding site of polymerase A CH47_4123 PF01743 Poly A polymerase head domain CH47_4123 PF01966 HD domain CH47_4124 PF08239 Bacterial SH3 domain CH47_4125 PF01928 CYTH domain CH47_4126 PF08335 GlnD PII-uridylyltransferase CH47_4126 PF03710 Glutamate-ammonia ligase adenylyltransferase CH47_4127 PF00294 pfkB family carbohydrate kinase CH47_4127 PF01467 Cytidylyltransferase-like CH47_4128 PF13520 Amino acid permease CH47_4129 PF04380 Membrane fusogenic activity CH47_413 PF04355 SmpA / OmlA family CH47_4130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH47_4131 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH47_4132 PF03738 Glutathionylspermidine synthase preATP-grasp CH47_4133 PF06693 Protein of unknown function (DUF1190) CH47_4134 PF02321 Outer membrane efflux protein CH47_4135 PF00293 NUDIX domain CH47_4136 PF06853 Protein of unknown function (DUF1249) CH47_4139 PF05728 Uncharacterised protein family (UPF0227) CH47_414 PF02463 RecF/RecN/SMC N terminal domain CH47_4140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_4140 PF00204 DNA gyrase B CH47_4140 PF01751 Toprim domain CH47_4140 PF00986 DNA gyrase B subunit, carboxyl terminus CH47_4141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_4141 PF03466 LysR substrate binding domain CH47_4142 PF03992 Antibiotic biosynthesis monooxygenase CH47_4143 PF02525 Flavodoxin-like fold CH47_4144 PF00521 DNA gyrase/topoisomerase IV, subunit A CH47_4144 PF03989 DNA gyrase C-terminal domain, beta-propeller CH47_4145 PF01553 Acyltransferase CH47_4146 PF07731 Multicopper oxidase CH47_4146 PF07732 Multicopper oxidase CH47_4147 PF11842 Domain of unknown function (DUF3362) CH47_4147 PF04055 Radical SAM superfamily CH47_4147 PF08497 Radical SAM N-terminal CH47_4148 PF00248 Aldo/keto reductase family CH47_4149 PF00465 Iron-containing alcohol dehydrogenase CH47_415 PF01513 ATP-NAD kinase CH47_4150 PF06719 AraC-type transcriptional regulator N-terminus CH47_4150 PF12833 Helix-turn-helix domain CH47_4151 PF09335 SNARE associated Golgi protein CH47_4152 PF01053 Cys/Met metabolism PLP-dependent enzyme CH47_4153 PF01618 MotA/TolQ/ExbB proton channel family CH47_4154 PF02472 Biopolymer transport protein ExbD/TolR CH47_416 PF01025 GrpE CH47_4161 PF00437 Type II/IV secretion system protein CH47_4164 PF13629 Pilus formation protein N terminal region CH47_4164 PF00263 Bacterial type II and III secretion system protein CH47_4164 PF04972 BON domain CH47_4169 PF13532 2OG-Fe(II) oxygenase superfamily CH47_417 PF01797 Transposase IS200 like CH47_4170 PF00873 AcrB/AcrD/AcrF family CH47_4171 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_4171 PF00529 HlyD membrane-fusion protein of T1SS CH47_4177 PF11806 Domain of unknown function (DUF3327) CH47_4177 PF00756 Putative esterase CH47_4178 PF00005 ABC transporter CH47_4179 PF01032 FecCD transport family CH47_418 PF03167 Uracil DNA glycosylase superfamily CH47_4180 PF01032 FecCD transport family CH47_4181 PF01497 Periplasmic binding protein CH47_4182 PF07690 Major Facilitator Superfamily CH47_4183 PF01370 NAD dependent epimerase/dehydratase family CH47_4184 PF02203 Tar ligand binding domain homologue CH47_4184 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_4184 PF00672 HAMP domain CH47_4185 PF06767 Sif protein CH47_4185 PF00657 GDSL-like Lipase/Acylhydrolase CH47_4187 PF05433 Glycine zipper 2TM domain CH47_419 PF01228 Glycine radical CH47_4190 PF05932 Tir chaperone protein (CesT) family CH47_4191 PF12833 Helix-turn-helix domain CH47_4193 PF01312 FlhB HrpN YscU SpaS Family CH47_4194 PF01311 Bacterial export proteins, family 1 CH47_4195 PF01313 Bacterial export proteins, family 3 CH47_4196 PF00813 FliP family CH47_4197 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH47_4198 PF02120 Flagellar hook-length control protein FliK CH47_4199 PF07321 Type III secretion protein YscO CH47_42 PF12019 Type II transport protein GspH CH47_42 PF07963 Prokaryotic N-terminal methylation motif CH47_4200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_4200 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH47_4200 PF18269 T3SS EscN ATPase C-terminal domain CH47_4201 PF07201 HrpJ-like domain CH47_4202 PF09059 TyeA CH47_4204 PF09474 Type III secretion system YscX (type_III_YscX) CH47_4206 PF00771 FHIPEP family CH47_4207 PF09621 Type III secretion system regulator (LcrR) CH47_4208 PF07216 LcrG protein CH47_4209 PF04792 V antigen (LcrV) protein CH47_421 PF12796 Ankyrin repeats (3 copies) CH47_4210 PF07720 Tetratricopeptide repeat CH47_4211 PF04888 Secretion system effector C (SseC) like family CH47_4212 PF05844 YopD protein CH47_4214 PF12468 Type III secretion system leucine rich repeat protein CH47_4214 PF12468 Type III secretion system leucine rich repeat protein CH47_4215 PF00872 Transposase, Mutator family CH47_4216 PF13610 DDE domain CH47_4219 PF05932 Tir chaperone protein (CesT) family CH47_422 PF00270 DEAD/DEAH box helicase CH47_422 PF00271 Helicase conserved C-terminal domain CH47_4220 PF03543 Yersinia/Haemophilus virulence surface antigen CH47_4223 PF05818 Enterobacterial TraT complement resistance protein CH47_4224 PF13333 Integrase core domain CH47_4224 PF13276 HTH-like domain CH47_4224 PF01527 Transposase CH47_4224 PF00665 Integrase core domain CH47_4225 PF01527 Transposase CH47_4226 PF02387 IncFII RepA protein family CH47_4228 PF01797 Transposase IS200 like CH47_4229 PF01548 Transposase CH47_4229 PF02371 Transposase IS116/IS110/IS902 family CH47_423 PF05175 Methyltransferase small domain CH47_4230 PF00872 Transposase, Mutator family CH47_4232 PF09013 YopH, N-terminal CH47_4234 PF00069 Protein kinase domain CH47_4234 PF09632 Rac1-binding domain CH47_4238 PF13683 Integrase core domain CH47_4238 PF13276 HTH-like domain CH47_424 PF00890 FAD binding domain CH47_424 PF02910 Fumarate reductase flavoprotein C-term CH47_4241 PF00589 Phage integrase family CH47_4244 PF00872 Transposase, Mutator family CH47_4246 PF05662 Coiled stalk of trimeric autotransporter adhesin CH47_4246 PF03895 YadA-like membrane anchor domain CH47_4247 PF00892 EamA-like transporter family CH47_425 PF08281 Sigma-70, region 4 CH47_425 PF04542 Sigma-70 region 2 CH47_4250 PF13614 AAA domain CH47_4251 PF02195 ParB-like nuclease domain CH47_4251 PF18090 Centromere-binding protein HTH domain CH47_4254 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CH47_4257 PF13276 HTH-like domain CH47_4257 PF13333 Integrase core domain CH47_4257 PF00665 Integrase core domain CH47_4258 PF03545 Yersinia virulence determinant (YopE) CH47_4258 PF09020 YopE, N terminal CH47_4259 PF05932 Tir chaperone protein (CesT) family CH47_426 PF03872 Anti sigma-E protein RseA, N-terminal domain CH47_426 PF03873 Anti sigma-E protein RseA, C-terminal domain CH47_4261 PF00102 Protein-tyrosine phosphatase CH47_4261 PF09013 YopH, N-terminal CH47_4263 PF09013 YopH, N-terminal CH47_4264 PF02108 Flagellar assembly protein FliH CH47_4265 PF06578 YOP proteins translocation protein K (YscK) CH47_4266 PF01514 Secretory protein of YscJ/FliF family CH47_4267 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI CH47_4268 PF09025 YopR, type III needle-polymerisation regulator CH47_4269 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CH47_427 PF03888 MucB/RseB N-terminal domain CH47_427 PF17188 MucB/RseB C-terminal domain CH47_4270 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF CH47_4271 PF08988 Type III secretion system, cytoplasmic E component of needle CH47_43 PF07963 Prokaryotic N-terminal methylation motif CH47_43 PF08334 Type II secretion system (T2SS), protein G CH47_430 PF06421 GTP-binding protein LepA C-terminus CH47_430 PF03144 Elongation factor Tu domain 2 CH47_430 PF00009 Elongation factor Tu GTP binding domain CH47_430 PF00679 Elongation factor G C-terminus CH47_431 PF10502 Signal peptidase, peptidase S26 CH47_432 PF14622 Ribonuclease-III-like CH47_432 PF00035 Double-stranded RNA binding motif CH47_433 PF01926 50S ribosome-binding GTPase CH47_433 PF07650 KH domain CH47_434 PF11967 Recombination protein O N terminal CH47_434 PF02565 Recombination protein O C terminal CH47_435 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH47_436 PF01648 4'-phosphopantetheinyl transferase superfamily CH47_437 PF02447 GntP family permease CH47_438 PF12838 4Fe-4S dicluster domain CH47_439 PF01380 SIS domain CH47_439 PF01418 Helix-turn-helix domain, rpiR family CH47_44 PF00482 Type II secretion system (T2SS), protein F CH47_440 PF03472 Autoinducer binding domain CH47_440 PF00196 Bacterial regulatory proteins, luxR family CH47_441 PF13693 Winged helix-turn-helix DNA-binding CH47_442 PF01380 SIS domain CH47_445 PF14437 MafB19-like deaminase CH47_446 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_446 PF01464 Transglycosylase SLT domain CH47_447 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH47_447 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH47_447 PF02769 AIR synthase related protein, C-terminal domain CH47_45 PF00437 Type II/IV secretion system protein CH47_450 PF00512 His Kinase A (phospho-acceptor) domain CH47_450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_451 PF13942 YfhG lipoprotein CH47_452 PF00158 Sigma-54 interaction domain CH47_452 PF00072 Response regulator receiver domain CH47_453 PF02540 NAD synthase CH47_453 PF00795 Carbon-nitrogen hydrolase CH47_454 PF00543 Nitrogen regulatory protein P-II CH47_455 PF10797 Protein of unknown function CH47_456 PF10941 Protein of unknown function DUF2620 CH47_457 PF02126 Phosphotriesterase family CH47_458 PF01168 Alanine racemase, N-terminal domain CH47_46 PF03958 Bacterial type II/III secretion system short domain CH47_46 PF00263 Bacterial type II and III secretion system protein CH47_460 PF14503 YhfZ C-terminal domain CH47_460 PF14502 Helix-turn-helix domain CH47_461 PF00042 Globin CH47_461 PF00970 Oxidoreductase FAD-binding domain CH47_461 PF00175 Oxidoreductase NAD-binding domain CH47_462 PF00464 Serine hydroxymethyltransferase CH47_463 PF00874 PRD domain CH47_464 PF12832 MFS_1 like family CH47_465 PF06226 Protein of unknown function (DUF1007) CH47_466 PF03824 High-affinity nickel-transport protein CH47_467 PF13333 Integrase core domain CH47_467 PF00665 Integrase core domain CH47_467 PF13276 HTH-like domain CH47_469 PF00459 Inositol monophosphatase family CH47_470 PF00588 SpoU rRNA Methylase family CH47_471 PF02082 Transcriptional regulator CH47_472 PF00266 Aminotransferase class-V CH47_473 PF01592 NifU-like N terminal domain CH47_474 PF01521 Iron-sulphur cluster biosynthesis CH47_475 PF07743 HSCB C-terminal oligomerisation domain CH47_475 PF00226 DnaJ domain CH47_476 PF00012 Hsp70 protein CH47_477 PF00111 2Fe-2S iron-sulfur cluster binding domain CH47_478 PF04384 Iron-sulphur cluster assembly CH47_479 PF00883 Cytosol aminopeptidase family, catalytic domain CH47_479 PF12404 Peptidase CH47_480 PF14581 SseB protein C-terminal domain CH47_480 PF07179 SseB protein N-terminal domain CH47_481 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH47_481 PF17962 Bacterial macroglobulin domain 6 CH47_481 PF07678 A-macroglobulin TED domain CH47_481 PF01835 MG2 domain CH47_481 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH47_481 PF00207 Alpha-2-macroglobulin family CH47_481 PF07703 Alpha-2-macroglobulin bait region domain CH47_481 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH47_481 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH47_482 PF06832 Penicillin-Binding Protein C-terminus Family CH47_482 PF00912 Transglycosylase CH47_482 PF00905 Penicillin binding protein transpeptidase domain CH47_484 PF00334 Nucleoside diphosphate kinase CH47_485 PF04055 Radical SAM superfamily CH47_487 PF13464 Domain of unknown function (DUF4115) CH47_488 PF04551 GcpE protein CH47_489 PF03129 Anticodon binding domain CH47_489 PF13393 Histidyl-tRNA synthetase CH47_490 PF09976 Tetratricopeptide repeat-like domain CH47_491 PF13360 PQQ-like domain CH47_492 PF01926 50S ribosome-binding GTPase CH47_492 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH47_494 PF07191 zinc-ribbons CH47_495 PF02601 Exonuclease VII, large subunit CH47_495 PF13742 OB-fold nucleic acid binding domain CH47_496 PF00571 CBS domain CH47_496 PF00478 IMP dehydrogenase / GMP reductase domain CH47_497 PF02540 NAD synthase CH47_497 PF00958 GMP synthase C terminal domain CH47_497 PF00117 Glutamine amidotransferase class-I CH47_5 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH47_501 PF00732 GMC oxidoreductase CH47_501 PF05199 GMC oxidoreductase CH47_502 PF00034 Cytochrome c CH47_502 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH47_504 PF08543 Phosphomethylpyrimidine kinase CH47_508 PF00571 CBS domain CH47_508 PF01380 SIS domain CH47_509 PF08220 DeoR-like helix-turn-helix domain CH47_509 PF00455 DeoR C terminal sensor domain CH47_510 PF06923 Glucitol operon activator protein (GutM) CH47_511 PF00106 short chain dehydrogenase CH47_512 PF03829 PTS system glucitol/sorbitol-specific IIA component CH47_513 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH47_513 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH47_514 PF03608 PTS system enzyme II sorbitol-specific factor CH47_516 PF00781 Diacylglycerol kinase catalytic domain CH47_520 PF07411 Domain of unknown function (DUF1508) CH47_521 PF00072 Response regulator receiver domain CH47_521 PF00486 Transcriptional regulatory protein, C terminal CH47_522 PF00512 His Kinase A (phospho-acceptor) domain CH47_522 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_522 PF00672 HAMP domain CH47_523 PF07690 Major Facilitator Superfamily CH47_524 PF00873 AcrB/AcrD/AcrF family CH47_525 PF00873 AcrB/AcrD/AcrF family CH47_526 PF13533 Biotin-lipoyl like CH47_528 PF00419 Fimbrial protein CH47_529 PF13954 PapC N-terminal domain CH47_529 PF13953 PapC C-terminal domain CH47_529 PF00577 Outer membrane usher protein CH47_530 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_530 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_532 PF00012 Hsp70 protein CH47_533 PF08448 PAS fold CH47_533 PF08447 PAS fold CH47_533 PF00990 Diguanylate cyclase, GGDEF domain CH47_533 PF00563 EAL domain CH47_533 PF13426 PAS domain CH47_533 PF05231 MASE1 CH47_534 PF01769 Divalent cation transporter CH47_534 PF00571 CBS domain CH47_534 PF03448 MgtE intracellular N domain CH47_536 PF02541 Ppx/GppA phosphatase family CH47_537 PF13089 Polyphosphate kinase N-terminal domain CH47_537 PF17941 Polyphosphate kinase C-terminal domain 1 CH47_537 PF13090 Polyphosphate kinase C-terminal domain 2 CH47_537 PF02503 Polyphosphate kinase middle domain CH47_538 PF13276 HTH-like domain CH47_538 PF13683 Integrase core domain CH47_539 PF01527 Transposase CH47_54 PF00072 Response regulator receiver domain CH47_54 PF00486 Transcriptional regulatory protein, C terminal CH47_541 PF13302 Acetyltransferase (GNAT) domain CH47_542 PF00551 Formyl transferase CH47_543 PF02769 AIR synthase related protein, C-terminal domain CH47_543 PF00586 AIR synthase related protein, N-terminal domain CH47_545 PF00860 Permease family CH47_546 PF00308 Bacterial dnaA protein CH47_547 PF03960 ArsC family CH47_548 PF07720 Tetratricopeptide repeat CH47_548 PF01435 Peptidase family M48 CH47_549 PF01594 AI-2E family transporter CH47_55 PF00072 Response regulator receiver domain CH47_55 PF00196 Bacterial regulatory proteins, luxR family CH47_550 PF00578 AhpC/TSA family CH47_551 PF01842 ACT domain CH47_552 PF00701 Dihydrodipicolinate synthetase family CH47_553 PF06804 NlpB/DapX lipoprotein CH47_554 PF01259 SAICAR synthetase CH47_555 PF04228 Putative neutral zinc metallopeptidase CH47_556 PF04284 Protein of unknown function (DUF441) CH47_557 PF13718 GNAT acetyltransferase 2 CH47_557 PF17176 tRNA-binding domain CH47_557 PF05127 Helicase CH47_558 PF02230 Phospholipase/Carboxylesterase CH47_559 PF13980 Uncharacterised protein family (UPF0370) CH47_560 PF02557 D-alanyl-D-alanine carboxypeptidase CH47_561 PF07687 Peptidase dimerisation domain CH47_561 PF01546 Peptidase family M20/M25/M40 CH47_562 PF03960 ArsC family CH47_566 PF00873 AcrB/AcrD/AcrF family CH47_568 PF00196 Bacterial regulatory proteins, luxR family CH47_568 PF00072 Response regulator receiver domain CH47_570 PF03927 NapD protein CH47_571 PF00384 Molybdopterin oxidoreductase CH47_571 PF01568 Molydopterin dinucleotide binding domain CH47_571 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH47_571 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_572 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH47_573 PF03264 NapC/NirT cytochrome c family, N-terminal region CH47_575 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH47_576 PF00293 NUDIX domain CH47_577 PF00390 Malic enzyme, N-terminal domain CH47_577 PF01515 Phosphate acetyl/butaryl transferase CH47_577 PF03949 Malic enzyme, NAD binding domain CH47_578 PF00072 Response regulator receiver domain CH47_578 PF00196 Bacterial regulatory proteins, luxR family CH47_580 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH47_581 PF01218 Coproporphyrinogen III oxidase CH47_582 PF00583 Acetyltransferase (GNAT) family CH47_583 PF04076 Bacterial OB fold (BOF) protein CH47_584 PF06572 Protein of unknown function (DUF1131) CH47_585 PF04261 Dyp-type peroxidase family CH47_586 PF00701 Dihydrodipicolinate synthetase family CH47_587 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH47_588 PF00480 ROK family CH47_589 PF04074 YhcH/YjgK/YiaL CH47_590 PF01418 Helix-turn-helix domain, rpiR family CH47_590 PF01380 SIS domain CH47_591 PF07690 Major Facilitator Superfamily CH47_593 PF00528 Binding-protein-dependent transport system inner membrane component CH47_594 PF00528 Binding-protein-dependent transport system inner membrane component CH47_595 PF00005 ABC transporter CH47_596 PF00291 Pyridoxal-phosphate dependent enzyme CH47_597 PF00005 ABC transporter CH47_597 PF12704 MacB-like periplasmic core domain CH47_597 PF02687 FtsX-like permease family CH47_598 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_599 PF00486 Transcriptional regulatory protein, C terminal CH47_599 PF00072 Response regulator receiver domain CH47_6 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH47_600 PF16527 Two-component sensor protein CpxA, periplasmic domain CH47_600 PF00672 HAMP domain CH47_600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_600 PF00512 His Kinase A (phospho-acceptor) domain CH47_601 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH47_602 PF05524 PEP-utilising enzyme, N-terminal CH47_602 PF00391 PEP-utilising enzyme, mobile domain CH47_602 PF02896 PEP-utilising enzyme, TIM barrel domain CH47_603 PF00381 PTS HPr component phosphorylation site CH47_604 PF00291 Pyridoxal-phosphate dependent enzyme CH47_606 PF04354 ZipA, C-terminal FtsZ-binding domain CH47_607 PF00533 BRCA1 C Terminus (BRCT) domain CH47_607 PF01653 NAD-dependent DNA ligase adenylation domain CH47_607 PF03120 NAD-dependent DNA ligase OB-fold domain CH47_607 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH47_607 PF12826 Helix-hairpin-helix motif CH47_608 PF12843 Putative quorum-sensing-regulated virulence factor CH47_614 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH47_619 PF07662 Na+ dependent nucleoside transporter C-terminus CH47_619 PF01773 Na+ dependent nucleoside transporter N-terminus CH47_619 PF07670 Nucleoside recognition CH47_62 PF01514 Secretory protein of YscJ/FliF family CH47_620 PF01566 Natural resistance-associated macrophage protein CH47_622 PF00248 Aldo/keto reductase family CH47_623 PF03466 LysR substrate binding domain CH47_623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_624 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_624 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_624 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_626 PF02685 Glucokinase CH47_627 PF07690 Major Facilitator Superfamily CH47_628 PF00072 Response regulator receiver domain CH47_628 PF04397 LytTr DNA-binding domain CH47_629 PF07694 5TMR of 5TMR-LYT CH47_629 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_629 PF06580 Histidine kinase CH47_630 PF07350 Protein of unknown function (DUF1479) CH47_632 PF00155 Aminotransferase class I and II CH47_633 PF01292 Prokaryotic cytochrome b561 CH47_635 PF03783 Curli production assembly/transport component CsgG CH47_637 PF05643 Putative bacterial lipoprotein (DUF799) CH47_638 PF00232 Glycosyl hydrolase family 1 CH47_640 PF01810 LysE type translocator CH47_641 PF00005 ABC transporter CH47_642 PF00528 Binding-protein-dependent transport system inner membrane component CH47_644 PF13406 Transglycosylase SLT domain CH47_645 PF00324 Amino acid permease CH47_646 PF07969 Amidohydrolase family CH47_648 PF07690 Major Facilitator Superfamily CH47_649 PF01548 Transposase CH47_649 PF02371 Transposase IS116/IS110/IS902 family CH47_650 PF02405 Permease MlaE CH47_651 PF00005 ABC transporter CH47_655 PF13472 GDSL-like Lipase/Acylhydrolase family CH47_655 PF07859 alpha/beta hydrolase fold CH47_656 PF01292 Prokaryotic cytochrome b561 CH47_657 PF04264 YceI-like domain CH47_658 PF00356 Bacterial regulatory proteins, lacI family CH47_659 PF00367 phosphotransferase system, EIIB CH47_659 PF02378 Phosphotransferase system, EIIC CH47_66 PF12833 Helix-turn-helix domain CH47_660 PF00232 Glycosyl hydrolase family 1 CH47_662 PF03551 Transcriptional regulator PadR-like family CH47_663 PF08274 PhnA Zinc-Ribbon CH47_663 PF03831 PhnA domain CH47_664 PF00589 Phage integrase family CH47_664 PF13356 Arm DNA-binding domain CH47_675 PF13356 Arm DNA-binding domain CH47_675 PF00589 Phage integrase family CH47_675 PF14659 Phage integrase, N-terminal SAM-like domain CH47_678 PF01226 Formate/nitrite transporter CH47_679 PF00005 ABC transporter CH47_68 PF07201 HrpJ-like domain CH47_680 PF03379 CcmB protein CH47_681 PF01578 Cytochrome C assembly protein CH47_682 PF04995 Heme exporter protein D (CcmD) CH47_683 PF03100 CcmE CH47_684 PF01578 Cytochrome C assembly protein CH47_684 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH47_685 PF08534 Redoxin CH47_686 PF03918 Cytochrome C biogenesis protein CH47_687 PF03918 Cytochrome C biogenesis protein CH47_688 PF04333 MlaA lipoprotein CH47_69 PF00771 FHIPEP family CH47_690 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CH47_691 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH47_692 PF04175 Protein of unknown function (DUF406) CH47_693 PF02803 Thiolase, C-terminal domain CH47_693 PF00108 Thiolase, N-terminal domain CH47_694 PF00378 Enoyl-CoA hydratase/isomerase CH47_694 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH47_694 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH47_695 PF00300 Histidine phosphatase superfamily (branch 1) CH47_696 PF01713 Smr domain CH47_698 PF05175 Methyltransferase small domain CH47_699 PF01264 Chorismate synthase CH47_7 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH47_700 PF03411 Penicillin-insensitive murein endopeptidase CH47_701 PF01925 Sulfite exporter TauE/SafE CH47_702 PF04315 Elongation factor P hydroxylase CH47_703 PF08891 YfcL protein CH47_704 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH47_704 PF01266 FAD dependent oxidoreductase CH47_705 PF00109 Beta-ketoacyl synthase, N-terminal domain CH47_705 PF02801 Beta-ketoacyl synthase, C-terminal domain CH47_706 PF00990 Diguanylate cyclase, GGDEF domain CH47_706 PF17151 Periplasmic sensor domain CH47_707 PF01177 Asp/Glu/Hydantoin racemase CH47_709 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH47_71 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH47_71 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH47_71 PF18269 T3SS EscN ATPase C-terminal domain CH47_710 PF00232 Glycosyl hydrolase family 1 CH47_711 PF02378 Phosphotransferase system, EIIC CH47_712 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH47_713 PF00356 Bacterial regulatory proteins, lacI family CH47_714 PF00328 Histidine phosphatase superfamily (branch 2) CH47_715 PF03600 Citrate transporter CH47_717 PF02683 Cytochrome C biogenesis protein transmembrane region CH47_717 PF11412 Disulphide bond corrector protein DsbC CH47_719 PF00578 AhpC/TSA family CH47_720 PF00155 Aminotransferase class I and II CH47_721 PF00892 EamA-like transporter family CH47_722 PF00892 EamA-like transporter family CH47_724 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_724 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_724 PF11890 Domain of unknown function (DUF3410) CH47_726 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH47_726 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH47_727 PF01416 tRNA pseudouridine synthase CH47_728 PF09335 SNARE associated Golgi protein CH47_729 PF01039 Carboxyl transferase domain CH47_729 PF17848 Acetyl-coA carboxylase zinc finger domain CH47_730 PF08245 Mur ligase middle domain CH47_730 PF02875 Mur ligase family, glutamate ligase domain CH47_731 PF05036 Sporulation related domain CH47_732 PF02674 Colicin V production protein CH47_733 PF00156 Phosphoribosyl transferase domain CH47_734 PF02441 Flavoprotein CH47_735 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_736 PF00528 Binding-protein-dependent transport system inner membrane component CH47_737 PF00528 Binding-protein-dependent transport system inner membrane component CH47_738 PF00005 ABC transporter CH47_740 PF08338 Domain of unknown function (DUF1731) CH47_740 PF01370 NAD dependent epimerase/dehydratase family CH47_744 PF00293 NUDIX domain CH47_745 PF01797 Transposase IS200 like CH47_746 PF02371 Transposase IS116/IS110/IS902 family CH47_746 PF01548 Transposase CH47_747 PF03611 PTS system sugar-specific permease component CH47_749 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_75 PF00813 FliP family CH47_750 PF00356 Bacterial regulatory proteins, lacI family CH47_750 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH47_751 PF01797 Transposase IS200 like CH47_752 PF01515 Phosphate acetyl/butaryl transferase CH47_752 PF07085 DRTGG domain CH47_753 PF00871 Acetokinase family CH47_754 PF04217 Protein of unknown function, DUF412 CH47_755 PF03887 YfbU domain CH47_756 PF13419 Haloacid dehalogenase-like hydrolase CH47_758 PF03600 Citrate transporter CH47_758 PF02080 TrkA-C domain CH47_76 PF01313 Bacterial export proteins, family 3 CH47_760 PF00155 Aminotransferase class I and II CH47_761 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_761 PF03466 LysR substrate binding domain CH47_762 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH47_763 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH47_764 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH47_764 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH47_766 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH47_766 PF10531 SLBB domain CH47_766 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH47_767 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH47_767 PF00384 Molybdopterin oxidoreductase CH47_767 PF01568 Molydopterin dinucleotide binding domain CH47_767 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH47_768 PF00146 NADH dehydrogenase CH47_769 PF12838 4Fe-4S dicluster domain CH47_77 PF01311 Bacterial export proteins, family 1 CH47_770 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH47_771 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH47_772 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH47_772 PF00361 Proton-conducting membrane transporter CH47_773 PF00361 Proton-conducting membrane transporter CH47_774 PF00361 Proton-conducting membrane transporter CH47_776 PF06496 Protein of unknown function (DUF1097) CH47_777 PF02371 Transposase IS116/IS110/IS902 family CH47_777 PF01548 Transposase CH47_778 PF02371 Transposase IS116/IS110/IS902 family CH47_778 PF01548 Transposase CH47_78 PF01312 FlhB HrpN YscU SpaS Family CH47_780 PF01202 Shikimate kinase CH47_781 PF00106 short chain dehydrogenase CH47_782 PF00356 Bacterial regulatory proteins, lacI family CH47_783 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH47_783 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH47_784 PF07690 Major Facilitator Superfamily CH47_785 PF03928 Haem-degrading CH47_786 PF00920 Dehydratase family CH47_787 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH47_787 PF00034 Cytochrome c CH47_788 PF00732 GMC oxidoreductase CH47_788 PF05199 GMC oxidoreductase CH47_79 PF07720 Tetratricopeptide repeat CH47_790 PF05957 Bacterial protein of unknown function (DUF883) CH47_793 PF00425 chorismate binding enzyme CH47_794 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_794 PF16582 Middle domain of thiamine pyrophosphate CH47_794 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_795 PF12697 Alpha/beta hydrolase family CH47_796 PF00378 Enoyl-CoA hydratase/isomerase CH47_797 PF13378 Enolase C-terminal domain-like CH47_798 PF13193 AMP-binding enzyme C-terminal domain CH47_798 PF00501 AMP-binding enzyme CH47_799 PF00199 Catalase CH47_799 PF06628 Catalase-related immune-responsive CH47_8 PF01455 HupF/HypC family CH47_800 PF07437 YfaZ precursor CH47_801 PF03222 Tryptophan/tyrosine permease family CH47_802 PF00994 Probable molybdopterin binding domain CH47_805 PF00082 Subtilase family CH47_806 PF03974 Ecotin CH47_807 PF00111 2Fe-2S iron-sulfur cluster binding domain CH47_808 PF00268 Ribonucleotide reductase, small chain CH47_809 PF00317 Ribonucleotide reductase, all-alpha domain CH47_809 PF02867 Ribonucleotide reductase, barrel domain CH47_809 PF03477 ATP cone domain CH47_811 PF03989 DNA gyrase C-terminal domain, beta-propeller CH47_811 PF00521 DNA gyrase/topoisomerase IV, subunit A CH47_812 PF00512 His Kinase A (phospho-acceptor) domain CH47_812 PF09456 RcsC Alpha-Beta-Loop (ABL) CH47_812 PF00072 Response regulator receiver domain CH47_812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_813 PF00072 Response regulator receiver domain CH47_813 PF00196 Bacterial regulatory proteins, luxR family CH47_814 PF16359 RcsD-ABL domain CH47_814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH47_814 PF01627 Hpt domain CH47_815 PF07690 Major Facilitator Superfamily CH47_816 PF13533 Biotin-lipoyl like CH47_817 PF00267 Gram-negative porin CH47_820 PF00144 Beta-lactamase CH47_822 PF12706 Beta-lactamase superfamily domain CH47_823 PF02743 Cache domain CH47_823 PF00672 HAMP domain CH47_823 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH47_826 PF06183 DinI-like family CH47_827 PF00717 Peptidase S24-like CH47_827 PF01381 Helix-turn-helix CH47_829 PF06530 Phage antitermination protein Q CH47_831 PF00872 Transposase, Mutator family CH47_832 PF01418 Helix-turn-helix domain, rpiR family CH47_832 PF01380 SIS domain CH47_833 PF02378 Phosphotransferase system, EIIC CH47_833 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH47_833 PF00367 phosphotransferase system, EIIB CH47_834 PF00232 Glycosyl hydrolase family 1 CH47_837 PF11893 Domain of unknown function (DUF3413) CH47_837 PF00884 Sulfatase CH47_838 PF07208 Protein of unknown function (DUF1414) CH47_839 PF04245 37-kD nucleoid-associated bacterial protein CH47_840 PF01386 Ribosomal L25p family CH47_841 PF04851 Type III restriction enzyme, res subunit CH47_841 PF00271 Helicase conserved C-terminal domain CH47_842 PF01479 S4 domain CH47_842 PF00849 RNA pseudouridylate synthase CH47_843 PF07690 Major Facilitator Superfamily CH47_844 PF13989 YejG-like protein CH47_845 PF00005 ABC transporter CH47_845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH47_846 PF12911 N-terminal TM domain of oligopeptide transport permease C CH47_846 PF00528 Binding-protein-dependent transport system inner membrane component CH47_847 PF00528 Binding-protein-dependent transport system inner membrane component CH47_848 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH47_851 PF00877 NlpC/P60 family CH47_852 PF01569 PAP2 superfamily CH47_853 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH47_853 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH47_855 PF00392 Bacterial regulatory proteins, gntR family CH47_855 PF07729 FCD domain CH47_856 PF01232 Mannitol dehydrogenase Rossmann domain CH47_856 PF08125 Mannitol dehydrogenase C-terminal domain CH47_857 PF03786 D-mannonate dehydratase (UxuA) CH47_858 PF09285 Elongation factor P, C-terminal CH47_858 PF08207 Elongation factor P (EF-P) KOW-like domain CH47_858 PF01132 Elongation factor P (EF-P) OB domain CH47_859 PF03222 Tryptophan/tyrosine permease family CH47_860 PF03692 Putative zinc- or iron-chelating domain CH47_861 PF01568 Molydopterin dinucleotide binding domain CH47_861 PF18364 Molybdopterin oxidoreductase N-terminal domain CH47_861 PF00384 Molybdopterin oxidoreductase CH47_862 PF03264 NapC/NirT cytochrome c family, N-terminal region CH47_863 PF13344 Haloacid dehalogenase-like hydrolase CH47_863 PF00293 NUDIX domain CH47_864 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH47_864 PF00381 PTS HPr component phosphorylation site CH47_865 PF00294 pfkB family carbohydrate kinase CH47_866 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH47_866 PF02378 Phosphotransferase system, EIIC CH47_867 PF00486 Transcriptional regulatory protein, C terminal CH47_868 PF17550 Family of unknown function CH47_87 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_87 PF00529 HlyD membrane-fusion protein of T1SS CH47_870 PF02753 Pili assembly chaperone PapD, C-terminal domain CH47_870 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH47_871 PF13954 PapC N-terminal domain CH47_871 PF00577 Outer membrane usher protein CH47_871 PF13953 PapC C-terminal domain CH47_872 PF01261 Xylose isomerase-like TIM barrel CH47_873 PF03601 Conserved hypothetical protein 698 CH47_875 PF03466 LysR substrate binding domain CH47_875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH47_876 PF00324 Amino acid permease CH47_877 PF01032 FecCD transport family CH47_878 PF00005 ABC transporter CH47_879 PF07715 TonB-dependent Receptor Plug Domain CH47_879 PF00593 TonB dependent receptor CH47_88 PF04632 Fusaric acid resistance protein family CH47_880 PF00043 Glutathione S-transferase, C-terminal domain CH47_880 PF13417 Glutathione S-transferase, N-terminal domain CH47_884 PF03180 NLPA lipoprotein CH47_885 PF09383 NIL domain CH47_885 PF00005 ABC transporter CH47_886 PF00528 Binding-protein-dependent transport system inner membrane component CH47_887 PF01053 Cys/Met metabolism PLP-dependent enzyme CH47_888 PF00291 Pyridoxal-phosphate dependent enzyme CH47_888 PF00571 CBS domain CH47_889 PF00768 D-alanyl-D-alanine carboxypeptidase CH47_889 PF07943 Penicillin-binding protein 5, C-terminal domain CH47_890 PF03315 Serine dehydratase beta chain CH47_890 PF03313 Serine dehydratase alpha chain CH47_892 PF08220 DeoR-like helix-turn-helix domain CH47_892 PF00455 DeoR C terminal sensor domain CH47_893 PF01791 DeoC/LacD family aldolase CH47_894 PF01569 PAP2 superfamily CH47_899 PF16452 Bacteriophage CI repressor C-terminal domain CH47_899 PF07022 Bacteriophage CI repressor helix-turn-helix domain CH47_9 PF01924 Hydrogenase formation hypA family CH47_90 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH47_90 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH47_90 PF01276 Orn/Lys/Arg decarboxylase, major domain CH47_901 PF06892 Phage regulatory protein CII (CP76) CH47_906 PF05840 Bacteriophage replication gene A protein (GPA) CH47_91 PF13520 Amino acid permease CH47_927 PF07484 Phage Tail Collar Domain CH47_928 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH47_933 PF06826 Predicted Permease Membrane Region CH47_933 PF02080 TrkA-C domain CH47_934 PF13276 HTH-like domain CH47_934 PF00665 Integrase core domain CH47_934 PF13333 Integrase core domain CH47_936 PF00462 Glutaredoxin CH47_937 PF07214 Protein of unknown function (DUF1418) CH47_938 PF10722 Putative bacterial sensory transduction regulator CH47_939 PF13416 Bacterial extracellular solute-binding protein CH47_940 PF08402 TOBE domain CH47_940 PF00005 ABC transporter CH47_941 PF00528 Binding-protein-dependent transport system inner membrane component CH47_942 PF00528 Binding-protein-dependent transport system inner membrane component CH47_943 PF10767 Protein of unknown function (DUF2593) CH47_944 PF05958 tRNA (Uracil-5-)-methyltransferase CH47_945 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_947 PF00528 Binding-protein-dependent transport system inner membrane component CH47_948 PF00528 Binding-protein-dependent transport system inner membrane component CH47_949 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH47_950 PF00005 ABC transporter CH47_951 PF12883 Protein of unknown function (DUF3828) CH47_952 PF01370 NAD dependent epimerase/dehydratase family CH47_953 PF13460 NAD(P)H-binding CH47_953 PF11066 Protein of unknown function (DUF2867) CH47_954 PF01212 Beta-eliminating lyase CH47_955 PF04072 Leucine carboxyl methyltransferase CH47_956 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH47_956 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH47_956 PF00205 Thiamine pyrophosphate enzyme, central domain CH47_957 PF00111 2Fe-2S iron-sulfur cluster binding domain CH47_957 PF00175 Oxidoreductase NAD-binding domain CH47_957 PF00970 Oxidoreductase FAD-binding domain CH47_958 PF03063 Prismane/CO dehydrogenase family CH47_959 PF03956 Lysine exporter LysO CH47_960 PF04393 Protein of unknown function (DUF535) CH47_961 PF11398 Protein of unknown function (DUF2813) CH47_962 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH47_963 PF12704 MacB-like periplasmic core domain CH47_963 PF00005 ABC transporter CH47_963 PF02687 FtsX-like permease family CH47_964 PF00313 'Cold-shock' DNA-binding domain CH47_965 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH47_966 PF17871 AAA lid domain CH47_966 PF07724 AAA domain (Cdc48 subfamily) CH47_966 PF00004 ATPase family associated with various cellular activities (AAA) CH47_966 PF02861 Clp amino terminal domain, pathogenicity island component CH47_966 PF10431 C-terminal, D2-small domain, of ClpB protein CH47_967 PF01176 Translation initiation factor 1A / IF-1 CH47_968 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH47_969 PF00664 ABC transporter transmembrane region CH47_969 PF00005 ABC transporter CH47_970 PF00005 ABC transporter CH47_970 PF00664 ABC transporter transmembrane region CH47_971 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH47_973 PF01037 Lrp/AsnC ligand binding domain CH47_974 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH47_974 PF17854 FtsK alpha domain CH47_974 PF09397 Ftsk gamma domain CH47_974 PF01580 FtsK/SpoIIIE family CH47_976 PF03548 Outer membrane lipoprotein carrier protein LolA CH47_977 PF16193 AAA C-terminal domain CH47_977 PF00004 ATPase family associated with various cellular activities (AAA) CH47_977 PF12002 MgsA AAA+ ATPase C terminal CH47_978 PF02403 Seryl-tRNA synthetase N-terminal domain CH47_978 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH47_979 PF07690 Major Facilitator Superfamily CH47_980 PF04055 Radical SAM superfamily CH47_981 PF01228 Glycine radical CH47_981 PF02901 Pyruvate formate lyase-like CH47_982 PF01226 Formate/nitrite transporter CH47_983 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH47_983 PF18381 YcaO cyclodehydratase C-terminal domain CH47_984 PF17763 Glutaminase/Asparaginase C-terminal domain CH47_984 PF00710 Asparaginase, N-terminal CH47_985 PF04239 Protein of unknown function (DUF421) CH47_986 PF00266 Aminotransferase class-V CH47_987 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH47_988 PF02224 Cytidylate kinase CH47_989 PF00575 S1 RNA binding domain CH47_990 PF00216 Bacterial DNA-binding protein CH47_991 PF00753 Metallo-beta-lactamase superfamily CH47_991 PF03772 Competence protein CH47_992 PF00664 ABC transporter transmembrane region CH47_992 PF00005 ABC transporter CH47_993 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH47_994 PF07063 Domain of unknown function (DUF1338) CH47_995 PF00313 'Cold-shock' DNA-binding domain CH47_996 PF00313 'Cold-shock' DNA-binding domain CH47_997 PF03966 Trm112p-like protein CH47_998 PF02348 Cytidylyltransferase CH47_999 PF01636 Phosphotransferase enzyme family