CH47_1007 SM00849 Metallo-beta-lactamase superfamily CH47_1008 SM00052 Putative diguanylate phosphodiesterase CH47_1018 SM00981 CH47_1018 CH47_1019 SM00382 ATPases associated with a variety of cellular activities CH47_1024 SM00825 Beta-ketoacyl synthase CH47_1035 SM00851 MGS-like domain CH47_1037 SM00881 CoA binding domain CH47_1038 SM00992 Hemimethylated DNA-binding protein YccV like CH47_1039 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH47_1046 SM00421 helix_turn_helix, Lux Regulon CH47_1048 SM01091 Transporter associated domain CH47_1059 SM00421 helix_turn_helix, Lux Regulon CH47_1059 SM00448 cheY-homologous receiver domain CH47_1060 SM00387 Histidine kinase-like ATPases CH47_1063 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH47_1065 SM00450 Rhodanese Homology Domain CH47_1067 SM00421 helix_turn_helix, Lux Regulon CH47_1076 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_1077 SM00363 S4 RNA-binding domain CH47_1083 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH47_1084 SM00822 CH47_1084 CH47_1086 SM00825 Beta-ketoacyl synthase CH47_109 SM00478 endonuclease III CH47_109 SM00525 CH47_109 CH47_1106 SM00487 DEAD-like helicases superfamily CH47_1106 SM00490 helicase superfamily c-terminal domain CH47_1106 SM00982 CH47_1106 CH47_1106 SM01058 CarD-like/TRCF domain CH47_1108 SM00382 ATPases associated with a variety of cellular activities CH47_1113 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH47_1114 SM00387 Histidine kinase-like ATPases CH47_1114 SM00388 His Kinase A (phosphoacceptor) domain CH47_1115 SM00448 cheY-homologous receiver domain CH47_1115 SM00862 Transcriptional regulatory protein, C terminal CH47_1122 SM01329 CH47_1122 CH47_1126 SM00354 helix_turn _helix lactose operon repressor CH47_1130 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_1130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_114 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_1141 SM00342 helix_turn_helix, arabinose operon control protein CH47_1146 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_1146 SM00091 PAS domain CH47_1148 SM00267 diguanylate cyclase CH47_1149 SM00090 RIO-like kinase CH47_1150 SM00382 ATPases associated with a variety of cellular activities CH47_1154 SM00342 helix_turn_helix, arabinose operon control protein CH47_116 SM01152 CH47_116 CH47_1164 SM00357 Cold shock protein domain CH47_1169 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_1169 SM00091 PAS domain CH47_1169 SM00267 diguanylate cyclase CH47_1176 SM01091 Transporter associated domain CH47_1183 SM00487 DEAD-like helicases superfamily CH47_1183 SM00490 helicase superfamily c-terminal domain CH47_1185 SM01022 CH47_1185 CH47_1188 SM00479 CH47_1188 CH47_123 SM00732 Likely ribonuclease with RNase H fold. CH47_1251 SM01252 CH47_1251 CH47_1262 SM00465 GIY-YIG type nucleases (URI domain) CH47_1263 SM00421 helix_turn_helix, Lux Regulon CH47_1263 SM00448 cheY-homologous receiver domain CH47_1267 SM00530 Helix-turn-helix XRE-family like proteins CH47_1277 SM00363 S4 RNA-binding domain CH47_128 SM00731 SprT homologues. CH47_1287 SM01022 CH47_1287 CH47_1289 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_1289 SM00091 PAS domain CH47_1289 SM00267 diguanylate cyclase CH47_129 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH47_1290 SM00972 Spore Coat Protein U domain CH47_1293 SM00972 Spore Coat Protein U domain CH47_1294 SM00972 Spore Coat Protein U domain CH47_1295 SM00972 Spore Coat Protein U domain CH47_1300 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH47_1301 SM00945 ProQ/FINO family CH47_1302 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH47_1302 SM00245 tail specific protease CH47_1311 SM00346 helix_turn_helix isocitrate lyase regulation CH47_1312 SM00644 CH47_1312 CH47_1317 SM00382 ATPases associated with a variety of cellular activities CH47_1334 SM00382 ATPases associated with a variety of cellular activities CH47_1346 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH47_1351 SM00873 B3/4 domain CH47_1351 SM00874 tRNA synthetase B5 domain CH47_1351 SM00896 Ferredoxin-fold anticodon binding domain CH47_1352 SM00411 bacterial (prokaryotic) histone like domain CH47_1357 SM00670 Large family of predicted nucleotide-binding domains CH47_136 SM00861 Transketolase, pyrimidine binding domain CH47_1374 SM00530 Helix-turn-helix XRE-family like proteins CH47_1375 SM00612 CH47_1375 CH47_1377 SM00903 Flavin reductase like domain CH47_14 SM00052 Putative diguanylate phosphodiesterase CH47_14 SM00091 PAS domain CH47_14 SM00267 diguanylate cyclase CH47_1400 SM00642 Alpha-amylase domain CH47_1404 SM00014 Acid phosphatase homologues CH47_1406 SM00028 Tetratricopeptide repeats CH47_1410 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH47_1413 SM01007 Class II Aldolase and Adducin N-terminal domain CH47_1415 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_1415 SM01134 CH47_1415 CH47_1419 SM00357 Cold shock protein domain CH47_1419 SM00955 CH47_1419 CH47_1424 SM00478 endonuclease III CH47_1424 SM00525 CH47_1424 CH47_1426 SM00900 CH47_1426 CH47_1428 SM00342 helix_turn_helix, arabinose operon control protein CH47_143 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH47_1434 SM00382 ATPases associated with a variety of cellular activities CH47_1436 SM00382 ATPases associated with a variety of cellular activities CH47_1440 SM00382 ATPases associated with a variety of cellular activities CH47_1442 SM00342 helix_turn_helix, arabinose operon control protein CH47_1449 SM00354 helix_turn _helix lactose operon repressor CH47_1453 SM00421 helix_turn_helix, Lux Regulon CH47_1471 SM00421 helix_turn_helix, Lux Regulon CH47_1477 SM00344 helix_turn_helix ASNC type CH47_1480 SM00062 Bacterial periplasmic substrate-binding proteins CH47_1485 SM00869 Autotransporter beta-domain CH47_1486 SM00421 helix_turn_helix, Lux Regulon CH47_1489 SM00354 helix_turn _helix lactose operon repressor CH47_1503 SM00098 Alkaline phosphatase homologues CH47_1504 SM00822 CH47_1504 CH47_1505 SM00871 Bacterial transcription activator, effector binding domain CH47_1509 SM00100 Cyclic nucleotide-monophosphate binding domain CH47_1509 SM00419 helix_turn_helix, cAMP Regulatory protein CH47_1512 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH47_1512 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH47_1516 SM00448 cheY-homologous receiver domain CH47_1516 SM00862 Transcriptional regulatory protein, C terminal CH47_1517 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_1517 SM00387 Histidine kinase-like ATPases CH47_1517 SM00388 His Kinase A (phosphoacceptor) domain CH47_1520 SM00020 Trypsin-like serine protease CH47_1521 SM00530 Helix-turn-helix XRE-family like proteins CH47_1523 SM00382 ATPases associated with a variety of cellular activities CH47_1523 SM00487 DEAD-like helicases superfamily CH47_1523 SM00490 helicase superfamily c-terminal domain CH47_1523 SM00847 Helicase associated domain (HA2) Add an annotation CH47_1534 SM00890 Domain of unknown function CH47_1537 SM01061 CAT RNA binding domain CH47_1542 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH47_1545 SM00091 PAS domain CH47_1545 SM00382 ATPases associated with a variety of cellular activities CH47_1547 SM00953 CH47_1547 CH47_155 SM01011 Aminopeptidase P, N-terminal domain CH47_1554 SM00382 ATPases associated with a variety of cellular activities CH47_1560 SM00382 ATPases associated with a variety of cellular activities CH47_1561 SM00382 ATPases associated with a variety of cellular activities CH47_1571 SM00363 S4 RNA-binding domain CH47_1576 SM00347 helix_turn_helix multiple antibiotic resistance protein CH47_1586 SM00479 CH47_1586 CH47_1591 SM00354 helix_turn _helix lactose operon repressor CH47_1606 SM00382 ATPases associated with a variety of cellular activities CH47_1628 SM00382 ATPases associated with a variety of cellular activities CH47_1633 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH47_1633 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH47_1633 SM00493 CH47_1633 CH47_1638 SM00363 S4 RNA-binding domain CH47_1647 SM00749 bacterial OsmY and nodulation domain CH47_1657 SM00052 Putative diguanylate phosphodiesterase CH47_1658 SM00155 Phospholipase D. Active site motifs. CH47_1660 SM00382 ATPases associated with a variety of cellular activities CH47_1661 SM00382 ATPases associated with a variety of cellular activities CH47_167 SM00448 cheY-homologous receiver domain CH47_167 SM00862 Transcriptional regulatory protein, C terminal CH47_1670 SM00528 Domain in histone-like proteins of HNS family CH47_1671 SM00984 UDP binding domain CH47_1672 SM00448 cheY-homologous receiver domain CH47_168 SM00387 Histidine kinase-like ATPases CH47_168 SM00388 His Kinase A (phosphoacceptor) domain CH47_1684 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH47_1684 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH47_1684 SM00493 CH47_1684 CH47_1688 SM00870 CH47_1688 CH47_1692 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH47_1698 SM00763 PrkA AAA domain CH47_1704 SM00052 Putative diguanylate phosphodiesterase CH47_1704 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH47_1704 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_1704 SM00091 PAS domain CH47_1704 SM00267 diguanylate cyclase CH47_1706 SM01005 Alanine racemase, C-terminal domain CH47_1709 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_1727 SM00341 Helicase and RNase D C-terminal CH47_1727 SM00474 3'-5' exonuclease CH47_1731 SM00487 DEAD-like helicases superfamily CH47_1731 SM00491 CH47_1731 CH47_174 SM00937 CH47_174 CH47_1740 SM00257 Lysin motif CH47_1742 SM00382 ATPases associated with a variety of cellular activities CH47_1745 SM00382 ATPases associated with a variety of cellular activities CH47_1746 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH47_1759 SM00836 DALR anticodon binding domain CH47_1759 SM01016 Arginyl tRNA synthetase N terminal dom CH47_1760 SM00912 haemagglutination activity domain CH47_1771 SM00481 DNA polymerase alpha chain like domain CH47_1776 SM00267 diguanylate cyclase CH47_1782 SM00937 CH47_1782 CH47_1786 SM01400 CH47_1786 CH47_179 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH47_1799 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_1799 SM01134 CH47_1799 CH47_1802 SM00257 Lysin motif CH47_1809 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_1809 SM00866 CH47_1809 CH47_1818 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_1821 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_1821 SM00387 Histidine kinase-like ATPases CH47_183 SM00091 PAS domain CH47_183 SM00267 diguanylate cyclase CH47_1839 SM00382 ATPases associated with a variety of cellular activities CH47_184 SM00344 helix_turn_helix ASNC type CH47_1849 SM01007 Class II Aldolase and Adducin N-terminal domain CH47_1851 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_1851 SM01134 CH47_1851 CH47_1852 SM00387 Histidine kinase-like ATPases CH47_1853 SM00448 cheY-homologous receiver domain CH47_1861 SM00382 ATPases associated with a variety of cellular activities CH47_1863 SM00062 Bacterial periplasmic substrate-binding proteins CH47_1863 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH47_1874 SM00342 helix_turn_helix, arabinose operon control protein CH47_1875 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_1876 SM00478 endonuclease III CH47_188 SM00354 helix_turn _helix lactose operon repressor CH47_1883 SM00382 ATPases associated with a variety of cellular activities CH47_189 SM00271 DnaJ molecular chaperone homology domain CH47_1895 SM00047 Lysozyme subfamily 2 CH47_1904 SM00858 CH47_1904 CH47_1907 SM00634 Bacterial Ig-like domain (group 1) CH47_191 SM00822 CH47_191 CH47_1913 SM00448 cheY-homologous receiver domain CH47_1914 SM00448 cheY-homologous receiver domain CH47_1915 SM00138 Methyltransferase, chemotaxis proteins CH47_1916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_1916 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_1916 SM00319 Homologues of the ligand binding domain of Tar CH47_1917 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_1917 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_1917 SM00319 Homologues of the ligand binding domain of Tar CH47_1918 SM00260 Two component signalling adaptor domain CH47_1919 SM00073 Histidine Phosphotransfer domain CH47_1919 SM00260 Two component signalling adaptor domain CH47_1919 SM00387 Histidine kinase-like ATPases CH47_1919 SM01231 CH47_1919 CH47_1925 SM00829 Enoylreductase CH47_1926 SM00831 Cation transporter/ATPase, N-terminus CH47_1929 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_1929 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_193 SM00947 Carbonic anhydrase CH47_1932 SM00357 Cold shock protein domain CH47_1933 SM00354 helix_turn _helix lactose operon repressor CH47_1934 SM01038 Beta galactosidase small chain CH47_1937 SM00829 Enoylreductase CH47_1939 SM00344 helix_turn_helix ASNC type CH47_1952 SM00382 ATPases associated with a variety of cellular activities CH47_1960 SM00382 ATPases associated with a variety of cellular activities CH47_1961 SM00382 ATPases associated with a variety of cellular activities CH47_1962 SM00342 helix_turn_helix, arabinose operon control protein CH47_1963 SM00823 Phosphopantetheine attachment site CH47_1964 SM00822 CH47_1964 CH47_1964 SM00823 Phosphopantetheine attachment site CH47_1964 SM00824 Thioesterase CH47_1964 SM00825 Beta-ketoacyl synthase CH47_1964 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH47_1966 SM00824 Thioesterase CH47_197 SM00382 ATPases associated with a variety of cellular activities CH47_1997 SM00764 Citrate lyase ligase C-terminal domain CH47_1998 SM00091 PAS domain CH47_1998 SM00387 Histidine kinase-like ATPases CH47_1999 SM00448 cheY-homologous receiver domain CH47_2000 SM00421 helix_turn_helix, Lux Regulon CH47_2000 SM00448 cheY-homologous receiver domain CH47_2001 SM00387 Histidine kinase-like ATPases CH47_2005 SM00382 ATPases associated with a variety of cellular activities CH47_2007 SM00421 helix_turn_helix, Lux Regulon CH47_2007 SM00448 cheY-homologous receiver domain CH47_2008 SM00062 Bacterial periplasmic substrate-binding proteins CH47_2008 SM00387 Histidine kinase-like ATPases CH47_2008 SM00388 His Kinase A (phosphoacceptor) domain CH47_2008 SM00448 cheY-homologous receiver domain CH47_2017 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_2020 SM00260 Two component signalling adaptor domain CH47_2020 SM00448 cheY-homologous receiver domain CH47_2022 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_2022 SM01134 CH47_2022 CH47_2044 SM00382 ATPases associated with a variety of cellular activities CH47_2044 SM01086 C-terminal, D2-small domain, of ClpB protein CH47_2053 SM00421 helix_turn_helix, Lux Regulon CH47_2055 SM00855 Phosphoglycerate mutase family CH47_2059 SM00382 ATPases associated with a variety of cellular activities CH47_206 SM00862 Transcriptional regulatory protein, C terminal CH47_2075 SM00342 helix_turn_helix, arabinose operon control protein CH47_2077 SM00877 CH47_2077 CH47_2078 SM00877 CH47_2078 CH47_208 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_208 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_208 SM00319 Homologues of the ligand binding domain of Tar CH47_2084 SM00877 CH47_2084 CH47_2085 SM00877 CH47_2085 CH47_2093 SM00877 CH47_2093 CH47_2094 SM00877 CH47_2094 CH47_210 SM00849 Metallo-beta-lactamase superfamily CH47_2100 SM00421 helix_turn_helix, Lux Regulon CH47_2103 SM00382 ATPases associated with a variety of cellular activities CH47_2113 SM00382 ATPases associated with a variety of cellular activities CH47_2124 SM01350 CH47_2124 CH47_2130 SM01091 Transporter associated domain CH47_2145 SM00919 Malic enzyme, NAD binding domain CH47_2145 SM01274 CH47_2145 CH47_215 SM00354 helix_turn _helix lactose operon repressor CH47_2161 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH47_2162 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH47_2162 SM00382 ATPases associated with a variety of cellular activities CH47_2165 SM00382 ATPases associated with a variety of cellular activities CH47_2167 SM00354 helix_turn _helix lactose operon repressor CH47_217 SM00563 Phosphate acyltransferases CH47_2172 SM00829 Enoylreductase CH47_2178 SM00382 ATPases associated with a variety of cellular activities CH47_2181 SM00852 Probable molybdopterin binding domain CH47_2183 SM01276 CH47_2183 CH47_2184 SM00382 ATPases associated with a variety of cellular activities CH47_2191 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CH47_2197 SM00062 Bacterial periplasmic substrate-binding proteins CH47_2197 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH47_2199 SM00382 ATPases associated with a variety of cellular activities CH47_22 SM00354 helix_turn _helix lactose operon repressor CH47_2200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_2200 SM00091 PAS domain CH47_2200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_2202 SM00903 Flavin reductase like domain CH47_2208 SM00487 DEAD-like helicases superfamily CH47_2208 SM00488 CH47_2208 CH47_2208 SM00491 CH47_2208 CH47_221 SM00927 DNA mismatch repair enzyme MutH CH47_2216 SM00382 ATPases associated with a variety of cellular activities CH47_2221 SM00450 Rhodanese Homology Domain CH47_2222 SM00382 ATPases associated with a variety of cellular activities CH47_223 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH47_2231 SM00382 ATPases associated with a variety of cellular activities CH47_2234 SM00507 HNH nucleases CH47_2235 SM01118 CH47_2235 CH47_2243 SM00487 DEAD-like helicases superfamily CH47_2243 SM00490 helicase superfamily c-terminal domain CH47_2246 SM00382 ATPases associated with a variety of cellular activities CH47_2253 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_2256 SM00487 DEAD-like helicases superfamily CH47_2256 SM00490 helicase superfamily c-terminal domain CH47_2257 SM00382 ATPases associated with a variety of cellular activities CH47_2261 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_2261 SM00876 Biotin and Thiamin Synthesis associated domain CH47_2265 SM00382 ATPases associated with a variety of cellular activities CH47_2270 SM00382 ATPases associated with a variety of cellular activities CH47_2279 SM00477 DNA/RNA non-specific endonuclease CH47_2279 SM00892 DNA/RNA non-specific endonuclease CH47_2280 SM00855 Phosphoglycerate mutase family CH47_2301 SM00881 CoA binding domain CH47_2304 SM00861 Transketolase, pyrimidine binding domain CH47_2314 SM00797 Allophanate hydrolase subunit 2 CH47_2315 SM00796 Allophanate hydrolase subunit 1 CH47_2324 SM00387 Histidine kinase-like ATPases CH47_2324 SM00388 His Kinase A (phosphoacceptor) domain CH47_2325 SM00448 cheY-homologous receiver domain CH47_2325 SM00862 Transcriptional regulatory protein, C terminal CH47_2333 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_2336 SM01081 Putative carbohydrate binding domain CH47_235 SM00646 CH47_235 CH47_2353 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_2356 SM00116 Domain in cystathionine beta-synthase and other proteins. CH47_2356 SM01091 Transporter associated domain CH47_2359 SM00062 Bacterial periplasmic substrate-binding proteins CH47_2362 SM00382 ATPases associated with a variety of cellular activities CH47_2373 SM00936 Penicillin-binding protein 5, C-terminal domain CH47_2376 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_2378 SM00267 diguanylate cyclase CH47_2380 SM00357 Cold shock protein domain CH47_2382 SM00421 helix_turn_helix, Lux Regulon CH47_2387 SM00382 ATPases associated with a variety of cellular activities CH47_2391 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH47_2393 SM00448 cheY-homologous receiver domain CH47_2393 SM00862 Transcriptional regulatory protein, C terminal CH47_2394 SM00387 Histidine kinase-like ATPases CH47_2394 SM00388 His Kinase A (phosphoacceptor) domain CH47_240 SM00925 MltA specific insert domain CH47_2424 SM00840 CH47_2424 CH47_2427 SM01001 AIR carboxylase CH47_2430 SM00382 ATPases associated with a variety of cellular activities CH47_2432 SM00822 CH47_2432 CH47_2434 SM00244 prohibitin homologues CH47_2436 SM00422 helix_turn_helix, mercury resistance CH47_2465 SM00387 Histidine kinase-like ATPases CH47_2466 SM00493 CH47_2466 CH47_2468 SM00382 ATPases associated with a variety of cellular activities CH47_248 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH47_248 SM00475 5'-3' exonuclease CH47_2486 SM00382 ATPases associated with a variety of cellular activities CH47_2495 SM00938 Nitrogen regulatory protein P-II CH47_2496 SM00382 ATPases associated with a variety of cellular activities CH47_2497 SM00382 ATPases associated with a variety of cellular activities CH47_2498 SM00344 helix_turn_helix ASNC type CH47_2504 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH47_2507 SM00411 bacterial (prokaryotic) histone like domain CH47_2508 SM00382 ATPases associated with a variety of cellular activities CH47_2508 SM00464 Found in ATP-dependent protease La (LON) CH47_2509 SM00382 ATPases associated with a variety of cellular activities CH47_2509 SM00994 ClpX C4-type zinc finger CH47_2509 SM01086 C-terminal, D2-small domain, of ClpB protein CH47_2525 SM00981 CH47_2525 CH47_2528 SM00861 Transketolase, pyrimidine binding domain CH47_2537 SM01323 CH47_2537 CH47_2545 SM00642 Alpha-amylase domain CH47_2549 SM00091 PAS domain CH47_2549 SM00387 Histidine kinase-like ATPases CH47_2549 SM00388 His Kinase A (phosphoacceptor) domain CH47_2550 SM00448 cheY-homologous receiver domain CH47_2550 SM00862 Transcriptional regulatory protein, C terminal CH47_2564 SM01068 Putative carbohydrate binding domain CH47_2569 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_2569 SM00866 CH47_2569 CH47_257 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_2571 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH47_2587 SM00900 CH47_2587 CH47_2595 SM00710 Parallel beta-helix repeats CH47_2595 SM00912 haemagglutination activity domain CH47_2601 SM01007 Class II Aldolase and Adducin N-terminal domain CH47_2607 SM00347 helix_turn_helix multiple antibiotic resistance protein CH47_2613 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH47_2615 SM01144 CH47_2615 CH47_2616 SM00881 CoA binding domain CH47_2617 SM00155 Phospholipase D. Active site motifs. CH47_2628 SM00382 ATPases associated with a variety of cellular activities CH47_2628 SM01086 C-terminal, D2-small domain, of ClpB protein CH47_2630 SM00363 S4 RNA-binding domain CH47_2633 SM00830 Chorismate mutase type II CH47_2634 SM00830 Chorismate mutase type II CH47_2636 SM00448 cheY-homologous receiver domain CH47_2636 SM00850 LytTr DNA-binding domain CH47_2643 SM00382 ATPases associated with a variety of cellular activities CH47_2643 SM00962 SRP54-type protein, GTPase domain CH47_2643 SM00963 SRP54-type protein, helical bundle domain CH47_2645 SM01091 Transporter associated domain CH47_2655 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH47_2657 SM00382 ATPases associated with a variety of cellular activities CH47_266 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH47_2663 SM00861 Transketolase, pyrimidine binding domain CH47_2666 SM00382 ATPases associated with a variety of cellular activities CH47_2678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH47_2679 SM00838 Elongation factor G C-terminus CH47_2679 SM00889 Elongation factor G, domain IV CH47_268 SM00935 Outer membrane protein (OmpH-like) CH47_2680 SM00530 Helix-turn-helix XRE-family like proteins CH47_2683 SM00382 ATPases associated with a variety of cellular activities CH47_2686 SM00062 Bacterial periplasmic substrate-binding proteins CH47_2690 SM00822 CH47_2690 CH47_2693 SM00825 Beta-ketoacyl synthase CH47_2695 SM00382 ATPases associated with a variety of cellular activities CH47_2697 SM00382 ATPases associated with a variety of cellular activities CH47_2712 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH47_2712 SM00534 ATPase domain of DNA mismatch repair MUTS family CH47_2714 SM00257 Lysin motif CH47_2738 SM01192 CH47_2738 CH47_2738 SM01193 CH47_2738 CH47_274 SM00481 DNA polymerase alpha chain like domain CH47_2741 SM00954 Region found in RelA / SpoT proteins CH47_2743 SM00073 Histidine Phosphotransfer domain CH47_2743 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_2743 SM00387 Histidine kinase-like ATPases CH47_2743 SM00388 His Kinase A (phosphoacceptor) domain CH47_2743 SM00448 cheY-homologous receiver domain CH47_2744 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH47_2745 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_2756 SM00382 ATPases associated with a variety of cellular activities CH47_2758 SM00487 DEAD-like helicases superfamily CH47_2758 SM00490 helicase superfamily c-terminal domain CH47_2758 SM00847 Helicase associated domain (HA2) Add an annotation CH47_2770 SM00382 ATPases associated with a variety of cellular activities CH47_2771 SM00947 Carbonic anhydrase CH47_278 SM00977 TilS substrate C-terminal domain CH47_2782 SM00342 helix_turn_helix, arabinose operon control protein CH47_2786 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_2786 SM00895 CH47_2786 CH47_2788 SM00634 Bacterial Ig-like domain (group 1) CH47_2790 SM00644 CH47_2790 CH47_2795 SM01240 CH47_2795 CH47_28 SM00382 ATPases associated with a variety of cellular activities CH47_2800 SM00957 SecA DEAD-like domain CH47_2800 SM00958 SecA preprotein cross-linking domain CH47_2804 SM00864 Tubulin/FtsZ family, GTPase domain CH47_2804 SM00865 Tubulin/FtsZ family, C-terminal domain CH47_2805 SM00842 Cell division protein FtsA CH47_282 SM01322 CH47_282 CH47_2820 SM00354 helix_turn _helix lactose operon repressor CH47_2826 SM00917 LeuA allosteric (dimerisation) domain CH47_2827 SM01329 CH47_2827 CH47_2844 SM00382 ATPases associated with a variety of cellular activities CH47_2845 SM00486 DNA polymerase type-B family CH47_2846 SM00487 DEAD-like helicases superfamily CH47_2846 SM00490 helicase superfamily c-terminal domain CH47_2848 SM00271 DnaJ molecular chaperone homology domain CH47_2852 SM00650 Ribosomal RNA adenine dimethylases CH47_2859 SM00851 MGS-like domain CH47_2859 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH47_2860 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH47_2866 SM00904 Riboflavin kinase CH47_2870 SM00271 DnaJ molecular chaperone homology domain CH47_2875 SM00852 Probable molybdopterin binding domain CH47_2881 SM00448 cheY-homologous receiver domain CH47_2881 SM00862 Transcriptional regulatory protein, C terminal CH47_2883 SM00855 Phosphoglycerate mutase family CH47_2884 SM00342 helix_turn_helix, arabinose operon control protein CH47_2884 SM00871 Bacterial transcription activator, effector binding domain CH47_2888 SM00831 Cation transporter/ATPase, N-terminus CH47_2890 SM00267 diguanylate cyclase CH47_2892 SM00382 ATPases associated with a variety of cellular activities CH47_2895 SM00530 Helix-turn-helix XRE-family like proteins CH47_2896 SM00829 Enoylreductase CH47_2897 SM00382 ATPases associated with a variety of cellular activities CH47_290 SM00382 ATPases associated with a variety of cellular activities CH47_290 SM00930 CH47_290 CH47_2903 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH47_2904 SM01133 CH47_2904 CH47_2909 SM00749 bacterial OsmY and nodulation domain CH47_2919 SM00267 diguanylate cyclase CH47_2925 SM00640 Glycosyl hydrolases family 32 CH47_2926 SM00354 helix_turn _helix lactose operon repressor CH47_2927 SM00091 PAS domain CH47_2936 SM01120 CH47_2936 CH47_2948 SM00382 ATPases associated with a variety of cellular activities CH47_2952 SM01133 CH47_2952 CH47_2958 SM00953 CH47_2958 CH47_2966 SM00421 helix_turn_helix, Lux Regulon CH47_2988 SM00382 ATPases associated with a variety of cellular activities CH47_2989 SM00382 ATPases associated with a variety of cellular activities CH47_2998 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_2998 SM00866 CH47_2998 CH47_3003 SM00382 ATPases associated with a variety of cellular activities CH47_3004 SM00382 ATPases associated with a variety of cellular activities CH47_3006 SM00072 Guanylate kinase homologues. CH47_3008 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH47_301 SM00563 Phosphate acyltransferases CH47_3012 SM00382 ATPases associated with a variety of cellular activities CH47_3032 SM00487 DEAD-like helicases superfamily CH47_3032 SM00490 helicase superfamily c-terminal domain CH47_3033 SM00028 Tetratricopeptide repeats CH47_3034 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_3034 SM00322 K homology RNA-binding domain CH47_3035 SM01387 CH47_3035 CH47_3040 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_3040 SM00322 K homology RNA-binding domain CH47_3047 SM00382 ATPases associated with a variety of cellular activities CH47_3049 SM01103 CH47_3049 CH47_3052 SM00448 cheY-homologous receiver domain CH47_3052 SM00862 Transcriptional regulatory protein, C terminal CH47_3053 SM00387 Histidine kinase-like ATPases CH47_3053 SM00388 His Kinase A (phosphoacceptor) domain CH47_3066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_3066 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_3072 SM01091 Transporter associated domain CH47_3087 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH47_3088 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_3088 SM00357 Cold shock protein domain CH47_3088 SM00955 CH47_3088 CH47_3090 SM00788 Adenylosuccinate synthetase CH47_3092 SM00244 prohibitin homologues CH47_3093 SM00244 prohibitin homologues CH47_3097 SM00853 MutL C terminal dimerisation domain CH47_3097 SM01340 CH47_3097 CH47_3098 SM00257 Lysin motif CH47_3098 SM00646 CH47_3098 CH47_31 SM00062 Bacterial periplasmic substrate-binding proteins CH47_31 SM00387 Histidine kinase-like ATPases CH47_31 SM00388 His Kinase A (phosphoacceptor) domain CH47_31 SM00448 cheY-homologous receiver domain CH47_3105 SM00479 CH47_3105 CH47_3117 SM00841 Elongation factor P, C-terminal CH47_3117 SM01185 CH47_3117 CH47_312 SM00825 Beta-ketoacyl synthase CH47_3121 SM00883 Chaperonin 10 Kd subunit CH47_3133 SM00822 CH47_3133 CH47_3139 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_314 SM00822 CH47_314 CH47_3147 SM00382 ATPases associated with a variety of cellular activities CH47_3148 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_315 SM00825 Beta-ketoacyl synthase CH47_3154 SM00382 ATPases associated with a variety of cellular activities CH47_3155 SM00965 Secretin and TonB N terminus short domain CH47_3161 SM00342 helix_turn_helix, arabinose operon control protein CH47_3162 SM00421 helix_turn_helix, Lux Regulon CH47_3162 SM00448 cheY-homologous receiver domain CH47_3174 SM00798 AICARFT/IMPCHase bienzyme CH47_3174 SM00851 MGS-like domain CH47_3175 SM01209 CH47_3175 CH47_3175 SM01210 CH47_3175 CH47_3177 SM00411 bacterial (prokaryotic) histone like domain CH47_3188 SM00876 Biotin and Thiamin Synthesis associated domain CH47_3190 SM00663 RNA polymerase I subunit A N-terminus CH47_3195 SM00649 Ribosomal protein L11/L12 CH47_3196 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH47_3196 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH47_32 SM00421 helix_turn_helix, Lux Regulon CH47_32 SM00448 cheY-homologous receiver domain CH47_320 SM00257 Lysin motif CH47_3207 SM01321 CH47_3207 CH47_321 SM00849 Metallo-beta-lactamase superfamily CH47_3221 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH47_3222 SM01004 Delta-aminolevulinic acid dehydratase CH47_324 SM00479 CH47_324 CH47_3241 SM00382 ATPases associated with a variety of cellular activities CH47_3251 SM00382 ATPases associated with a variety of cellular activities CH47_3252 SM00382 ATPases associated with a variety of cellular activities CH47_3259 SM00382 ATPases associated with a variety of cellular activities CH47_3260 SM00382 ATPases associated with a variety of cellular activities CH47_3260 SM00962 SRP54-type protein, GTPase domain CH47_3260 SM00963 SRP54-type protein, helical bundle domain CH47_3279 SM00341 Helicase and RNase D C-terminal CH47_3279 SM00487 DEAD-like helicases superfamily CH47_3279 SM00490 helicase superfamily c-terminal domain CH47_3279 SM00956 CH47_3279 CH47_328 SM00382 ATPases associated with a variety of cellular activities CH47_3293 SM01219 CH47_3293 CH47_3313 SM00984 UDP binding domain CH47_3317 SM00357 Cold shock protein domain CH47_3317 SM00382 ATPases associated with a variety of cellular activities CH47_3317 SM00959 Rho termination factor, N-terminal domain CH47_3319 SM00487 DEAD-like helicases superfamily CH47_3319 SM00490 helicase superfamily c-terminal domain CH47_3321 SM00060 Fibronectin type 3 domain CH47_3344 SM00382 ATPases associated with a variety of cellular activities CH47_3349 SM00382 ATPases associated with a variety of cellular activities CH47_335 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_3370 SM00382 ATPases associated with a variety of cellular activities CH47_3378 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH47_3390 SM00487 DEAD-like helicases superfamily CH47_3390 SM00490 helicase superfamily c-terminal domain CH47_3391 SM00354 helix_turn _helix lactose operon repressor CH47_3394 SM00382 ATPases associated with a variety of cellular activities CH47_3394 SM01086 C-terminal, D2-small domain, of ClpB protein CH47_340 SM00342 helix_turn_helix, arabinose operon control protein CH47_3410 SM00448 cheY-homologous receiver domain CH47_3410 SM00862 Transcriptional regulatory protein, C terminal CH47_3411 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_3411 SM00387 Histidine kinase-like ATPases CH47_3411 SM00388 His Kinase A (phosphoacceptor) domain CH47_3412 SM00342 helix_turn_helix, arabinose operon control protein CH47_3414 SM00971 Serine acetyltransferase, N-terminal CH47_3418 SM00450 Rhodanese Homology Domain CH47_3422 SM00829 Enoylreductase CH47_3430 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH47_3430 SM01232 CH47_3430 CH47_3446 SM00493 CH47_3446 CH47_3446 SM00778 Zinc-binding domain of primase-helicase CH47_345 SM00357 Cold shock protein domain CH47_3453 SM00849 Metallo-beta-lactamase superfamily CH47_3455 SM00052 Putative diguanylate phosphodiesterase CH47_3455 SM00091 PAS domain CH47_3455 SM00267 diguanylate cyclase CH47_346 SM00342 helix_turn_helix, arabinose operon control protein CH47_3460 SM00532 Ligase N family CH47_3461 SM00072 Guanylate kinase homologues. CH47_3462 SM01409 CH47_3462 CH47_3463 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_3463 SM00954 Region found in RelA / SpoT proteins CH47_3465 SM00487 DEAD-like helicases superfamily CH47_3465 SM00490 helicase superfamily c-terminal domain CH47_3469 SM00421 helix_turn_helix, Lux Regulon CH47_347 SM00450 Rhodanese Homology Domain CH47_3470 SM00421 helix_turn_helix, Lux Regulon CH47_3471 SM00421 helix_turn_helix, Lux Regulon CH47_3472 SM00421 helix_turn_helix, Lux Regulon CH47_3473 SM00421 helix_turn_helix, Lux Regulon CH47_3480 SM01230 CH47_3480 CH47_3481 SM00091 PAS domain CH47_3481 SM00387 Histidine kinase-like ATPases CH47_3481 SM00388 His Kinase A (phosphoacceptor) domain CH47_3482 SM00382 ATPases associated with a variety of cellular activities CH47_3482 SM00448 cheY-homologous receiver domain CH47_3483 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_3486 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH47_3486 SM00474 3'-5' exonuclease CH47_3486 SM00475 5'-3' exonuclease CH47_3486 SM00482 DNA polymerase A domain CH47_3496 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_3496 SM00895 CH47_3496 CH47_3497 SM00354 helix_turn _helix lactose operon repressor CH47_3502 SM00382 ATPases associated with a variety of cellular activities CH47_3505 SM00382 ATPases associated with a variety of cellular activities CH47_3506 SM00327 von Willebrand factor (vWF) type A domain CH47_3509 SM00344 helix_turn_helix ASNC type CH47_3511 SM01228 CH47_3511 CH47_352 SM00382 ATPases associated with a variety of cellular activities CH47_3520 SM00382 ATPases associated with a variety of cellular activities CH47_3528 SM00382 ATPases associated with a variety of cellular activities CH47_353 SM00382 ATPases associated with a variety of cellular activities CH47_3531 SM00062 Bacterial periplasmic substrate-binding proteins CH47_3537 SM00421 helix_turn_helix, Lux Regulon CH47_3537 SM00448 cheY-homologous receiver domain CH47_3538 SM00387 Histidine kinase-like ATPases CH47_3538 SM00388 His Kinase A (phosphoacceptor) domain CH47_3540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_3540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_3542 SM00382 ATPases associated with a variety of cellular activities CH47_3542 SM00930 CH47_3542 CH47_3547 SM01234 CH47_3547 CH47_3550 SM00382 ATPases associated with a variety of cellular activities CH47_3550 SM00760 Bacterial dnaA protein helix-turn-helix domain CH47_3551 SM00480 DNA polymerase III beta subunit CH47_3553 SM00387 Histidine kinase-like ATPases CH47_3553 SM00433 TopoisomeraseII CH47_3568 SM00642 Alpha-amylase domain CH47_358 SM00988 UreE urease accessory protein, N-terminal domain CH47_3585 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_3587 SM00966 SpoVT / AbrB like domain CH47_3590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_3590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_3590 SM01358 CH47_3590 CH47_3593 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH47_3600 SM00530 Helix-turn-helix XRE-family like proteins CH47_3603 SM00342 helix_turn_helix, arabinose operon control protein CH47_3610 SM00382 ATPases associated with a variety of cellular activities CH47_3612 SM00342 helix_turn_helix, arabinose operon control protein CH47_3624 SM00354 helix_turn _helix lactose operon repressor CH47_3640 SM00421 helix_turn_helix, Lux Regulon CH47_3640 SM00448 cheY-homologous receiver domain CH47_3641 SM00387 Histidine kinase-like ATPases CH47_3644 SM00912 haemagglutination activity domain CH47_3646 SM00912 haemagglutination activity domain CH47_3650 SM00382 ATPases associated with a variety of cellular activities CH47_3651 SM00382 ATPases associated with a variety of cellular activities CH47_3661 SM00028 Tetratricopeptide repeats CH47_3662 SM00052 Putative diguanylate phosphodiesterase CH47_3670 SM00052 Putative diguanylate phosphodiesterase CH47_3674 SM00869 Autotransporter beta-domain CH47_3679 SM00235 Zinc-dependent metalloprotease CH47_3680 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH47_3710 SM00354 helix_turn _helix lactose operon repressor CH47_3714 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH47_3719 SM00642 Alpha-amylase domain CH47_3720 SM00642 Alpha-amylase domain CH47_3726 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_3726 SM00387 Histidine kinase-like ATPases CH47_3726 SM00388 His Kinase A (phosphoacceptor) domain CH47_3727 SM00448 cheY-homologous receiver domain CH47_3727 SM00862 Transcriptional regulatory protein, C terminal CH47_3731 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_3731 SM00732 Likely ribonuclease with RNase H fold. CH47_3732 SM00899 CH47_3732 CH47_374 SM00342 helix_turn_helix, arabinose operon control protein CH47_3741 SM00421 helix_turn_helix, Lux Regulon CH47_3742 SM00450 Rhodanese Homology Domain CH47_3744 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_3744 SM01134 CH47_3744 CH47_3747 SM00363 S4 RNA-binding domain CH47_3770 SM00354 helix_turn _helix lactose operon repressor CH47_3773 SM00382 ATPases associated with a variety of cellular activities CH47_3777 SM00100 Cyclic nucleotide-monophosphate binding domain CH47_3777 SM00419 helix_turn_helix, cAMP Regulatory protein CH47_3784 SM00062 Bacterial periplasmic substrate-binding proteins CH47_3785 SM00382 ATPases associated with a variety of cellular activities CH47_3790 SM00382 ATPases associated with a variety of cellular activities CH47_3803 SM00838 Elongation factor G C-terminus CH47_3803 SM00889 Elongation factor G, domain IV CH47_3808 SM01403 CH47_3808 CH47_3812 SM01382 CH47_3812 CH47_3812 SM01383 CH47_3812 CH47_3815 SM00322 K homology RNA-binding domain CH47_3819 SM01374 CH47_3819 CH47_3820 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH47_383 SM00778 Zinc-binding domain of primase-helicase CH47_383 SM00885 D5 N terminal like CH47_3833 SM00363 S4 RNA-binding domain CH47_3833 SM01390 CH47_3833 CH47_3834 SM00662 RNA polymerases D CH47_3837 SM00422 helix_turn_helix, mercury resistance CH47_3862 SM00346 helix_turn_helix isocitrate lyase regulation CH47_3863 SM01018 B12 binding domain CH47_3871 SM00382 ATPases associated with a variety of cellular activities CH47_3877 SM00563 Phosphate acyltransferases CH47_3893 SM00530 Helix-turn-helix XRE-family like proteins CH47_3900 SM01252 CH47_3900 CH47_3904 SM00344 helix_turn_helix ASNC type CH47_3913 SM01252 CH47_3913 CH47_3947 SM00829 Enoylreductase CH47_3948 SM00382 ATPases associated with a variety of cellular activities CH47_3949 SM01005 Alanine racemase, C-terminal domain CH47_3955 SM00530 Helix-turn-helix XRE-family like proteins CH47_3962 SM00382 ATPases associated with a variety of cellular activities CH47_3965 SM00062 Bacterial periplasmic substrate-binding proteins CH47_3971 SM00357 Cold shock protein domain CH47_3972 SM00357 Cold shock protein domain CH47_3974 SM00267 diguanylate cyclase CH47_3980 SM00878 Biotin carboxylase C-terminal domain CH47_3985 SM00829 Enoylreductase CH47_3986 SM00052 Putative diguanylate phosphodiesterase CH47_3986 SM00267 diguanylate cyclase CH47_3992 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_4017 SM00831 Cation transporter/ATPase, N-terminus CH47_4018 SM00354 helix_turn _helix lactose operon repressor CH47_4020 SM00642 Alpha-amylase domain CH47_4022 SM00460 Transglutaminase/protease-like homologues CH47_4039 SM00382 ATPases associated with a variety of cellular activities CH47_4045 SM00382 ATPases associated with a variety of cellular activities CH47_4052 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH47_4053 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH47_4063 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_4064 SM00073 Histidine Phosphotransfer domain CH47_4064 SM00091 PAS domain CH47_4064 SM00387 Histidine kinase-like ATPases CH47_4064 SM00388 His Kinase A (phosphoacceptor) domain CH47_4064 SM00448 cheY-homologous receiver domain CH47_4067 SM00749 bacterial OsmY and nodulation domain CH47_4076 SM00829 Enoylreductase CH47_408 SM00382 ATPases associated with a variety of cellular activities CH47_4089 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_4089 SM00895 CH47_4089 CH47_4093 SM00858 CH47_4093 CH47_4099 SM00869 Autotransporter beta-domain CH47_4117 SM00400 zinc finger CH47_4117 SM00493 CH47_4117 CH47_4117 SM00766 DNA primase DnaG DnaB-binding CH47_4120 SM01207 CH47_4120 CH47_4121 SM00905 Dihydroneopterin aldolase CH47_4123 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_4124 SM00287 Bacterial SH3 domain homologues CH47_4125 SM01118 CH47_4125 CH47_4140 SM00387 Histidine kinase-like ATPases CH47_4140 SM00433 TopoisomeraseII CH47_4144 SM00434 DNA Topoisomerase IV CH47_4145 SM00563 Phosphate acyltransferases CH47_4147 SM00729 Elongator protein 3, MiaB family, Radical SAM CH47_4150 SM00342 helix_turn_helix, arabinose operon control protein CH47_417 SM01321 CH47_417 CH47_4178 SM00382 ATPases associated with a variety of cellular activities CH47_418 SM00986 Uracil DNA glycosylase superfamily CH47_418 SM00987 UreE urease accessory protein, C-terminal domain CH47_4184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_4186 SM00862 Transcriptional regulatory protein, C terminal CH47_4191 SM00342 helix_turn_helix, arabinose operon control protein CH47_4200 SM00382 ATPases associated with a variety of cellular activities CH47_421 SM00248 ankyrin repeats CH47_4214 SM00364 Leucine-rich repeats, bacterial type CH47_422 SM00487 DEAD-like helicases superfamily CH47_422 SM00490 helicase superfamily c-terminal domain CH47_4228 SM01321 CH47_4228 CH47_4234 SM00220 Serine/Threonine protein kinases, catalytic domain CH47_4251 SM00470 ParB-like nuclease domain CH47_4261 SM00194 Protein tyrosine phosphatase, catalytic domain CH47_4261 SM00404 Protein tyrosine phosphatase, catalytic domain motif CH47_432 SM00358 Double-stranded RNA binding motif CH47_432 SM00535 Ribonuclease III family CH47_440 SM00421 helix_turn_helix, Lux Regulon CH47_446 SM00062 Bacterial periplasmic substrate-binding proteins CH47_447 SM01211 CH47_447 CH47_45 SM00382 ATPases associated with a variety of cellular activities CH47_450 SM00387 Histidine kinase-like ATPases CH47_450 SM00388 His Kinase A (phosphoacceptor) domain CH47_452 SM00382 ATPases associated with a variety of cellular activities CH47_452 SM00448 cheY-homologous receiver domain CH47_454 SM00938 Nitrogen regulatory protein P-II CH47_475 SM00271 DnaJ molecular chaperone homology domain CH47_481 SM01359 CH47_481 CH47_481 SM01360 CH47_481 CH47_483 SM00247 Beta/gamma crystallins CH47_484 SM00562 CH47_484 CH47_486 SM00028 Tetratricopeptide repeats CH47_487 SM00530 Helix-turn-helix XRE-family like proteins CH47_491 SM00564 beta-propeller repeat CH47_496 SM00116 Domain in cystathionine beta-synthase and other proteins. CH47_496 SM01240 CH47_496 CH47_508 SM00116 Domain in cystathionine beta-synthase and other proteins. CH47_509 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_509 SM01134 CH47_509 CH47_516 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH47_519 SM00530 Helix-turn-helix XRE-family like proteins CH47_521 SM00448 cheY-homologous receiver domain CH47_521 SM00862 Transcriptional regulatory protein, C terminal CH47_522 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_522 SM00387 Histidine kinase-like ATPases CH47_522 SM00388 His Kinase A (phosphoacceptor) domain CH47_533 SM00052 Putative diguanylate phosphodiesterase CH47_533 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_533 SM00091 PAS domain CH47_533 SM00267 diguanylate cyclase CH47_534 SM00924 MgtE intracellular N domain CH47_54 SM00062 Bacterial periplasmic substrate-binding proteins CH47_54 SM00387 Histidine kinase-like ATPases CH47_54 SM00388 His Kinase A (phosphoacceptor) domain CH47_54 SM00448 cheY-homologous receiver domain CH47_55 SM00421 helix_turn_helix, Lux Regulon CH47_55 SM00448 cheY-homologous receiver domain CH47_552 SM01130 CH47_552 CH47_568 SM00421 helix_turn_helix, Lux Regulon CH47_568 SM00448 cheY-homologous receiver domain CH47_571 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH47_577 SM00919 Malic enzyme, NAD binding domain CH47_577 SM01274 CH47_577 CH47_578 SM00421 helix_turn_helix, Lux Regulon CH47_586 SM01130 CH47_586 CH47_595 SM00382 ATPases associated with a variety of cellular activities CH47_597 SM00382 ATPases associated with a variety of cellular activities CH47_599 SM00448 cheY-homologous receiver domain CH47_599 SM00862 Transcriptional regulatory protein, C terminal CH47_600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_600 SM00387 Histidine kinase-like ATPases CH47_600 SM00388 His Kinase A (phosphoacceptor) domain CH47_606 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH47_607 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH47_607 SM00292 breast cancer carboxy-terminal domain CH47_607 SM00532 Ligase N family CH47_628 SM00448 cheY-homologous receiver domain CH47_628 SM00850 LytTr DNA-binding domain CH47_629 SM00387 Histidine kinase-like ATPases CH47_641 SM00382 ATPases associated with a variety of cellular activities CH47_651 SM00382 ATPases associated with a variety of cellular activities CH47_654 SM00422 helix_turn_helix, mercury resistance CH47_657 SM00867 YceI-like domain CH47_658 SM00354 helix_turn _helix lactose operon repressor CH47_66 SM00342 helix_turn_helix, arabinose operon control protein CH47_672 SM00778 Zinc-binding domain of primase-helicase CH47_679 SM00382 ATPases associated with a variety of cellular activities CH47_696 SM00463 Small MutS-related domain CH47_705 SM00825 Beta-ketoacyl synthase CH47_706 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH47_706 SM00091 PAS domain CH47_706 SM00267 diguanylate cyclase CH47_71 SM00382 ATPases associated with a variety of cellular activities CH47_713 SM00354 helix_turn _helix lactose operon repressor CH47_720 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_723 SM00342 helix_turn_helix, arabinose operon control protein CH47_726 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH47_735 SM00062 Bacterial periplasmic substrate-binding proteins CH47_738 SM00382 ATPases associated with a variety of cellular activities CH47_741 SM00052 Putative diguanylate phosphodiesterase CH47_745 SM01321 CH47_745 CH47_750 SM00354 helix_turn _helix lactose operon repressor CH47_751 SM01321 CH47_751 CH47_759 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH47_766 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH47_767 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH47_767 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH47_782 SM00354 helix_turn _helix lactose operon repressor CH47_792 SM00869 Autotransporter beta-domain CH47_797 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH47_799 SM01060 CH47_799 CH47_802 SM00852 Probable molybdopterin binding domain CH47_811 SM00434 DNA Topoisomerase IV CH47_812 SM00387 Histidine kinase-like ATPases CH47_812 SM00388 His Kinase A (phosphoacceptor) domain CH47_812 SM00448 cheY-homologous receiver domain CH47_813 SM00421 helix_turn_helix, Lux Regulon CH47_813 SM00448 cheY-homologous receiver domain CH47_814 SM00387 Histidine kinase-like ATPases CH47_814 SM00388 His Kinase A (phosphoacceptor) domain CH47_823 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH47_823 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH47_827 SM00530 Helix-turn-helix XRE-family like proteins CH47_841 SM00487 DEAD-like helicases superfamily CH47_841 SM00490 helicase superfamily c-terminal domain CH47_842 SM00363 S4 RNA-binding domain CH47_845 SM00382 ATPases associated with a variety of cellular activities CH47_852 SM00014 Acid phosphatase homologues CH47_853 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH47_855 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH47_855 SM00895 CH47_855 CH47_858 SM00841 Elongation factor P, C-terminal CH47_858 SM01185 CH47_858 CH47_867 SM00862 Transcriptional regulatory protein, C terminal CH47_872 SM00518 AP endonuclease family 2 CH47_878 SM00382 ATPases associated with a variety of cellular activities CH47_885 SM00382 ATPases associated with a variety of cellular activities CH47_885 SM00930 CH47_885 CH47_888 SM00116 Domain in cystathionine beta-synthase and other proteins. CH47_889 SM00936 Penicillin-binding protein 5, C-terminal domain CH47_892 SM00420 helix_turn_helix, Deoxyribose operon repressor CH47_892 SM01134 CH47_892 CH47_893 SM01133 CH47_893 CH47_894 SM00014 Acid phosphatase homologues CH47_940 SM00382 ATPases associated with a variety of cellular activities CH47_945 SM00062 Bacterial periplasmic substrate-binding proteins CH47_945 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH47_949 SM00062 Bacterial periplasmic substrate-binding proteins CH47_949 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH47_950 SM00382 ATPases associated with a variety of cellular activities CH47_963 SM00382 ATPases associated with a variety of cellular activities CH47_964 SM00357 Cold shock protein domain CH47_966 SM00382 ATPases associated with a variety of cellular activities CH47_966 SM01086 C-terminal, D2-small domain, of ClpB protein CH47_967 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_969 SM00382 ATPases associated with a variety of cellular activities CH47_970 SM00382 ATPases associated with a variety of cellular activities CH47_973 SM00344 helix_turn_helix ASNC type CH47_974 SM00843 CH47_974 CH47_977 SM00382 ATPases associated with a variety of cellular activities CH47_984 SM00870 CH47_984 CH47_989 SM00316 Ribosomal protein S1-like RNA-binding domain CH47_990 SM00411 bacterial (prokaryotic) histone like domain CH47_991 SM00849 Metallo-beta-lactamase superfamily CH47_992 SM00382 ATPases associated with a variety of cellular activities CH47_994 SM01150 CH47_994 CH47_995 SM00357 Cold shock protein domain CH47_996 SM00357 Cold shock protein domain