BED35_00020 PF05973 BED35_00020 BED35_00025 PF01381 Helix-turn-helix BED35_00045 PF10412 Type IV secretion-system coupling protein DNA-binding domain BED35_00050 PF08751 TrwC relaxase BED35_00050 PF13604 AAA domain BED35_00055 PF04471 Restriction endonuclease BED35_00070 PF01464 Transglycosylase SLT domain BED35_00080 PF00816 H-NS histone family BED35_00090 PF00589 Phage integrase family BED35_00095 PF13643 BED35_00095 BED35_00110 PF07876 Stress responsive A/B Barrel Domain BED35_00120 PF11924 Protein of unknown function (DUF3442) BED35_00125 PF11924 Protein of unknown function (DUF3442) BED35_00130 PF09134 Invasin, domain 3 BED35_00145 PF07180 Protein of unknown function (DUF1401) BED35_00190 PF07180 Protein of unknown function (DUF1401) BED35_00210 PF05593 BED35_00210 BED35_00215 PF01527 Transposase BED35_00235 PF09140 ATPase MipZ BED35_00240 PF13936 Helix-turn-helix domain BED35_00265 PF05860 haemagglutination activity domain BED35_00265 PF13018 BED35_00265 BED35_00270 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED35_00270 PF08479 POTRA domain, ShlB-type BED35_00270 PF17287 BED35_00270 BED35_00275 PF03212 Pertactin BED35_00275 PF03797 Autotransporter beta-domain BED35_00275 PF16168 BED35_00275 BED35_00280 PF00239 Resolvase, N terminal domain BED35_00285 PF00589 Phage integrase family BED35_00295 PF07916 BED35_00295 BED35_00295 PF13166 BED35_00295 BED35_00300 PF06122 BED35_00300 BED35_00305 PF13728 F plasmid transfer operon protein BED35_00310 PF08308 BED35_00310 BED35_00315 PF10502 Signal peptidase, peptidase S26 BED35_00320 PF09673 BED35_00320 BED35_00325 PF06834 BED35_00325 BED35_00330 PF06986 BED35_00330 BED35_00340 PF01935 Domain of unknown function DUF87 BED35_00340 PF11130 BED35_00340 BED35_00345 PF09676 BED35_00345 BED35_00350 PF03743 Bacterial conjugation TrbI-like protein BED35_00355 PF06586 BED35_00355 BED35_00360 PF05309 BED35_00360 BED35_00375 PF10411 Disulfide bond isomerase protein N-terminus BED35_00375 PF13098 Thioredoxin-like domain BED35_00410 PF04986 BED35_00410 BED35_00410 PF14319 BED35_00410 BED35_00415 PF13614 AAA domain BED35_00420 PF08535 KorB domain BED35_00480 PF04888 BED35_00480 BED35_00485 PF05844 YopD protein BED35_00490 PF00872 BED35_00490 BED35_00500 PF12468 Type III secretion system leucine rich repeat protein BED35_00515 PF00665 Integrase core domain BED35_00515 PF13276 BED35_00515 BED35_00520 PF05932 Tir chaperone protein (CesT) family BED35_00525 PF03543 Yersinia/Haemophilus virulence surface antigen BED35_00540 PF05818 BED35_00540 BED35_00545 PF03421 BED35_00545 BED35_00565 PF01527 Transposase BED35_00570 PF00665 Integrase core domain BED35_00575 PF01526 BED35_00575 BED35_00595 PF02387 BED35_00595 BED35_00600 PF10723 Replication regulatory protein RepB BED35_00605 PF13091 PLD-like domain BED35_00610 PF00665 Integrase core domain BED35_00610 PF13276 BED35_00610 BED35_00615 PF07057 DNA helicase TraI BED35_00630 PF03358 NADPH-dependent FMN reductase BED35_00635 PF01022 Bacterial regulatory protein, arsR family BED35_00640 PF02040 BED35_00640 BED35_00645 PF03960 ArsC family BED35_00650 PF00239 Resolvase, N terminal domain BED35_00650 PF02796 Helix-turn-helix domain of resolvase BED35_00655 PF01526 BED35_00655 BED35_00655 PF13700 BED35_00655 BED35_00660 PF00196 Bacterial regulatory proteins, luxR family BED35_00665 PF00892 EamA-like transporter family BED35_00670 PF03895 YadA-like C-terminal region BED35_00675 PF00665 Integrase core domain BED35_00685 PF09013 YopH, N-terminal BED35_00690 PF13683 BED35_00690 BED35_00695 PF00665 Integrase core domain BED35_00695 PF13276 BED35_00695 BED35_00700 PF00665 Integrase core domain BED35_00700 PF13276 BED35_00700 BED35_00720 PF00376 MerR family regulatory protein BED35_00720 PF13614 AAA domain BED35_00725 PF02195 ParB-like nuclease domain BED35_00730 PF03693 Uncharacterised protein family (UPF0156) BED35_00735 PF05016 Plasmid stabilisation system protein BED35_00740 PF03545 Yersinia virulence determinant (YopE) BED35_00740 PF09020 YopE, N terminal BED35_00745 PF05932 Tir chaperone protein (CesT) family BED35_00760 PF05932 Tir chaperone protein (CesT) family BED35_00765 PF00102 Protein-tyrosine phosphatase BED35_00765 PF09013 YopH, N-terminal BED35_00770 PF09013 YopH, N-terminal BED35_00775 PF02108 BED35_00775 BED35_00780 PF06578 BED35_00780 BED35_00785 PF01514 Secretory protein of YscJ/FliF family BED35_00790 PF17001 BED35_00790 BED35_00795 PF09025 YopR Core BED35_00800 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) BED35_00805 PF09392 Type III secretion needle MxiH like BED35_00810 PF08988 Protein of unknown function (DUF1895) BED35_00815 PF16693 BED35_00815 BED35_00820 PF00263 BED35_00820 BED35_00820 PF03958 Bacterial type II/III secretion system short domain BED35_00825 PF05932 Tir chaperone protein (CesT) family BED35_00830 PF17551 BED35_00830 BED35_00835 PF12833 Helix-turn-helix domain BED35_00840 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED35_00845 PF01312 FlhB HrpN YscU SpaS Family BED35_00850 PF01311 BED35_00850 BED35_00855 PF01313 BED35_00855 BED35_00865 PF01052 Surface presentation of antigens (SPOA) BED35_00870 PF02120 Flagellar hook-length control protein FliK BED35_00875 PF07321 Type III secretion protein YscO BED35_00885 PF07201 HrpJ-like domain BED35_00890 PF09059 TyeA BED35_00900 PF09474 BED35_00900 BED35_00915 PF09621 BED35_00915 BED35_00920 PF07216 BED35_00920 BED35_00925 PF04792 V antigen (LcrV) protein BED35_00930 PF07720 Tetratricopeptide repeat BED35_00935 PF00308 Bacterial dnaA protein BED35_00935 PF08299 Bacterial dnaA protein helix-turn-helix BED35_00935 PF11638 DnaA N-terminal domain BED35_00940 PF00712 DNA polymerase III beta subunit, N-terminal domain BED35_00940 PF02767 DNA polymerase III beta subunit, central domain BED35_00940 PF02768 DNA polymerase III beta subunit, C-terminal domain BED35_00945 PF02463 RecF/RecN/SMC N terminal domain BED35_00950 PF00204 DNA gyrase B BED35_00950 PF00986 DNA gyrase B subunit, carboxyl terminus BED35_00950 PF01751 Toprim domain BED35_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_00955 PF08282 haloacid dehalogenase-like hydrolase BED35_00960 PF02423 Ornithine cyclodeaminase/mu-crystallin family BED35_00965 PF00291 Pyridoxal-phosphate dependent enzyme BED35_00970 PF07676 WD40-like Beta Propeller Repeat BED35_00970 PF12566 BED35_00970 BED35_00975 PF07119 BED35_00975 BED35_00980 PF00011 Hsp20/alpha crystallin family BED35_00985 PF00011 Hsp20/alpha crystallin family BED35_00990 PF01548 BED35_00990 BED35_00990 PF02371 BED35_00990 BED35_01000 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED35_01000 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED35_01005 PF00230 Major intrinsic protein BED35_01015 PF06005 Protein of unknown function (DUF904) BED35_01020 PF03737 Demethylmenaquinone methyltransferase BED35_01025 PF01040 UbiA prenyltransferase family BED35_01030 PF00004 ATPase family associated with various cellular activities (AAA) BED35_01030 PF07724 AAA domain (Cdc48 subfamily) BED35_01030 PF10431 C-terminal, D2-small domain, of ClpB protein BED35_01035 PF00227 Proteasome subunit BED35_01040 PF05036 Sporulation related domain BED35_01045 PF00356 Bacterial regulatory proteins, lacI family BED35_01045 PF13377 Periplasmic binding protein-like domain BED35_01050 PF00270 DEAD/DEAH box helicase BED35_01050 PF00271 Helicase conserved C-terminal domain BED35_01055 PF01197 Ribosomal protein L31 BED35_01060 PF01340 Met Apo-repressor, MetJ BED35_01065 PF01053 Cys/Met metabolism PLP-dependent enzyme BED35_01070 PF00696 Amino acid kinase family BED35_01070 PF00742 Homoserine dehydrogenase BED35_01070 PF03447 Homoserine dehydrogenase, NAD binding domain BED35_01075 PF02219 Methylenetetrahydrofolate reductase BED35_01080 PF00311 Phosphoenolpyruvate carboxylase BED35_01085 PF01546 Peptidase family M20/M25/M40 BED35_01085 PF07687 Peptidase dimerisation domain BED35_01090 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED35_01090 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED35_01095 PF00696 Amino acid kinase family BED35_01100 PF00206 Lyase BED35_01100 PF14698 Argininosuccinate lyase C-terminal BED35_01110 PF06438 Heme-binding protein A (HasA) BED35_01115 PF06438 Heme-binding protein A (HasA) BED35_01120 PF06438 Heme-binding protein A (HasA) BED35_01130 PF00005 ABC transporter BED35_01130 PF00664 ABC transporter transmembrane region BED35_01135 PF13437 HlyD family secretion protein BED35_01135 PF13533 Biotin-lipoyl like BED35_01140 PF03544 Gram-negative bacterial TonB protein C-terminal BED35_01155 PF00462 Glutaredoxin BED35_01155 PF08534 Redoxin BED35_01160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01160 PF03466 LysR substrate binding domain BED35_01165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED35_01165 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_01170 PF00440 Bacterial regulatory proteins, tetR family BED35_01175 PF07226 BED35_01175 BED35_01180 PF05958 tRNA (Uracil-5-)-methyltransferase BED35_01185 PF00593 TonB dependent receptor BED35_01185 PF07715 TonB-dependent Receptor Plug Domain BED35_01190 PF01177 Asp/Glu/Hydantoin racemase BED35_01230 PF13407 Periplasmic binding protein domain BED35_01235 PF00005 ABC transporter BED35_01240 PF02653 BED35_01240 BED35_01245 PF02653 BED35_01245 BED35_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01250 PF03466 LysR substrate binding domain BED35_01255 PF04219 BED35_01255 BED35_01260 PF01078 Magnesium chelatase, subunit ChlI BED35_01260 PF13335 BED35_01260 BED35_01260 PF13541 Subunit ChlI of Mg-chelatase BED35_01265 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_01265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_01265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_01270 PF13710 ACT domain BED35_01275 PF01063 Aminotransferase class IV BED35_01280 PF00920 Dehydratase family BED35_01285 PF00291 Pyridoxal-phosphate dependent enzyme BED35_01285 PF00585 C-terminal regulatory domain of Threonine dehydratase BED35_01300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01300 PF03466 LysR substrate binding domain BED35_01305 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BED35_01305 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BED35_01315 PF01320 Colicin immunity protein / pyocin immunity protein BED35_01320 PF01320 Colicin immunity protein / pyocin immunity protein BED35_01325 PF06530 BED35_01325 BED35_01330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_01330 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_01335 PF00419 Fimbrial protein BED35_01340 PF13953 PapC C-terminal domain BED35_01350 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_01350 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_01355 PF13358 DDE superfamily endonuclease BED35_01355 PF13384 Homeodomain-like domain BED35_01365 PF00356 Bacterial regulatory proteins, lacI family BED35_01365 PF13377 Periplasmic binding protein-like domain BED35_01370 PF13673 Acetyltransferase (GNAT) domain BED35_01375 PF13708 BED35_01375 BED35_01380 PF06755 BED35_01380 BED35_01390 PF00872 BED35_01390 BED35_01395 PF12146 Putative lysophospholipase BED35_01400 PF05860 haemagglutination activity domain BED35_01430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_01430 PF05231 BED35_01430 BED35_01430 PF07730 Histidine kinase BED35_01435 PF00072 Response regulator receiver domain BED35_01435 PF00196 Bacterial regulatory proteins, luxR family BED35_01440 PF00884 Sulfatase BED35_01440 PF08019 BED35_01440 BED35_01445 PF02566 OsmC-like protein BED35_01450 PF01548 BED35_01450 BED35_01450 PF02371 BED35_01450 BED35_01455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_01460 PF00528 Binding-protein-dependent transport system inner membrane component BED35_01465 PF00528 Binding-protein-dependent transport system inner membrane component BED35_01465 PF12911 BED35_01465 BED35_01470 PF00005 ABC transporter BED35_01470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_01475 PF00005 ABC transporter BED35_01475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_01480 PF11658 BED35_01480 BED35_01485 PF11120 BED35_01485 BED35_01490 PF10995 BED35_01490 BED35_01495 PF10945 BED35_01495 BED35_01500 PF06564 YhjQ protein BED35_01505 PF00535 Glycosyl transferase family 2 BED35_01505 PF03552 Cellulose synthase BED35_01505 PF07238 PilZ domain BED35_01510 PF03170 Bacterial cellulose synthase subunit BED35_01515 PF01270 Glycosyl hydrolases family 8 BED35_01520 PF05420 BED35_01520 BED35_01520 PF13432 Tetratricopeptide repeat BED35_01520 PF14559 Tetratricopeptide repeat BED35_01530 PF00563 EAL domain BED35_01530 PF17154 BED35_01530 BED35_01535 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED35_01540 PF06917 Periplasmic pectate lyase BED35_01545 PF00754 F5/8 type C domain BED35_01550 PF00375 Sodium:dicarboxylate symporter family BED35_01555 PF00675 Insulinase (Peptidase family M16) BED35_01555 PF05193 Peptidase M16 inactive domain BED35_01560 PF00294 pfkB family carbohydrate kinase BED35_01565 PF01361 Tautomerase enzyme BED35_01570 PF00563 EAL domain BED35_01580 PF02611 CDP-diacylglycerol pyrophosphatase BED35_01585 PF03631 BED35_01585 BED35_01590 PF03212 Pertactin BED35_01590 PF03797 Autotransporter beta-domain BED35_01595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED35_01595 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_01600 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ BED35_01605 PF01432 Peptidase family M3 BED35_01610 PF04445 Putative SAM-dependent methyltransferase BED35_01615 PF08548 Peptidase M10 serralysin C terminal BED35_01620 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED35_01620 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BED35_01625 PF00582 Universal stress protein family BED35_01630 PF01548 BED35_01630 BED35_01630 PF02371 BED35_01630 BED35_01635 PF10625 BED35_01635 BED35_01640 PF01384 BED35_01640 BED35_01645 PF03486 HI0933-like protein BED35_01650 PF08722 TnsA endonuclease N terminal BED35_01660 PF13401 AAA domain BED35_01675 PF16473 BED35_01675 BED35_01685 PF13610 BED35_01685 BED35_01690 PF07728 AAA domain (dynein-related subfamily) BED35_01700 PF04607 Region found in RelA / SpoT proteins BED35_01710 PF00375 Sodium:dicarboxylate symporter family BED35_01715 PF14330 BED35_01715 BED35_01720 PF07287 BED35_01720 BED35_01725 PF05034 Methylaspartate ammonia-lyase N-terminus BED35_01725 PF07476 Methylaspartate ammonia-lyase C-terminus BED35_01730 PF06368 Methylaspartate mutase E chain (MutE) BED35_01745 PF00288 GHMP kinases N terminal domain BED35_01750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01755 PF03466 LysR substrate binding domain BED35_01760 PF05681 BED35_01760 BED35_01760 PF05683 Fumarase C-terminus BED35_01770 PF08282 haloacid dehalogenase-like hydrolase BED35_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01780 PF03466 LysR substrate binding domain BED35_01785 PF07690 Major Facilitator Superfamily BED35_01790 PF00171 Aldehyde dehydrogenase family BED35_01795 PF04962 KduI/IolB family BED35_01800 PF01380 SIS domain BED35_01800 PF01418 Helix-turn-helix domain, rpiR family BED35_01805 PF00294 pfkB family carbohydrate kinase BED35_01805 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) BED35_01810 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_01810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_01810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_01815 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED35_01815 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED35_01820 PF01261 Xylose isomerase-like TIM barrel BED35_01825 PF00583 Acetyltransferase (GNAT) family BED35_01830 PF02678 Pirin BED35_01835 PF00356 Bacterial regulatory proteins, lacI family BED35_01835 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_01840 PF02447 BED35_01840 BED35_01845 PF01202 Shikimate kinase BED35_01850 PF01914 BED35_01850 BED35_01855 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED35_01855 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED35_01860 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_01860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_01860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_01865 PF03306 Alpha-acetolactate decarboxylase BED35_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_01870 PF03466 LysR substrate binding domain BED35_01875 PF06580 BED35_01875 BED35_01875 PF07694 5TMR of 5TMR-LYT BED35_01880 PF00128 Alpha amylase, catalytic domain BED35_01880 PF02806 Alpha amylase, C-terminal all-beta domain BED35_01880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED35_01885 PF00128 Alpha amylase, catalytic domain BED35_01885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED35_01890 PF00483 Nucleotidyl transferase BED35_01895 PF00534 Glycosyl transferases group 1 BED35_01895 PF08323 Starch synthase catalytic domain BED35_01900 PF00343 Carbohydrate phosphorylase BED35_01905 PF01266 FAD dependent oxidoreductase BED35_01905 PF16901 BED35_01905 BED35_01915 PF01548 BED35_01915 BED35_01915 PF02371 BED35_01915 BED35_01920 PF00455 BED35_01920 BED35_01920 PF08220 DeoR-like helix-turn-helix domain BED35_01925 PF01694 Rhomboid family BED35_01925 PF12122 Protein of unknown function (DUF3582) BED35_01930 PF00581 Rhodanese-like domain BED35_01940 PF00196 Bacterial regulatory proteins, luxR family BED35_01945 PF00343 Carbohydrate phosphorylase BED35_01950 PF02446 4-alpha-glucanotransferase BED35_01955 PF01106 NifU-like domain BED35_01955 PF01521 Iron-sulphur cluster biosynthesis BED35_01965 PF00561 alpha/beta hydrolase fold BED35_01970 PF07338 Protein of unknown function (DUF1471) BED35_01975 PF01548 BED35_01975 BED35_01975 PF02371 BED35_01975 BED35_01980 PF09012 FeoC like transcriptional regulator BED35_01985 PF02421 Ferrous iron transport protein B BED35_01985 PF07664 BED35_01985 BED35_01985 PF07670 Nucleoside recognition BED35_01990 PF04023 FeoA domain BED35_01995 PF00575 S1 RNA binding domain BED35_01995 PF09371 Tex-like protein N-terminal domain BED35_01995 PF12836 Helix-hairpin-helix motif BED35_01995 PF16921 BED35_01995 BED35_02000 PF07690 Major Facilitator Superfamily BED35_02020 PF01272 Transcription elongation factor, GreA/GreB, C-term BED35_02020 PF03449 Transcription elongation factor, N-terminal BED35_02025 PF00072 Response regulator receiver domain BED35_02025 PF00486 Transcriptional regulatory protein, C terminal BED35_02030 PF00512 His Kinase A (phospho-acceptor) domain BED35_02030 PF00672 HAMP domain BED35_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_02035 PF01293 Phosphoenolpyruvate carboxykinase BED35_02040 PF01430 Hsp33 protein BED35_02045 PF01479 S4 domain BED35_02050 PF13419 Haloacid dehalogenase-like hydrolase BED35_02055 PF07095 Intracellular growth attenuator protein IgaA BED35_02060 PF00293 NUDIX domain BED35_02065 PF00905 Penicillin binding protein transpeptidase domain BED35_02065 PF00912 Transglycosylase BED35_02065 PF17092 BED35_02065 BED35_02070 PF11104 Type IV pilus assembly protein PilM; BED35_02075 PF05137 BED35_02075 BED35_02085 PF10748 BED35_02085 BED35_02090 PF00263 BED35_02090 BED35_02090 PF03958 Bacterial type II/III secretion system short domain BED35_02095 PF01202 Shikimate kinase BED35_02100 PF01761 3-dehydroquinate synthase BED35_02105 PF05036 Sporulation related domain BED35_02110 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED35_02115 PF00834 Ribulose-phosphate 3 epimerase family BED35_02125 PF00579 tRNA synthetases class I (W and Y) BED35_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_02130 PF10414 Sirohaem synthase dimerisation region BED35_02130 PF13241 Putative NAD(P)-binding BED35_02130 PF14824 Sirohaem biosynthesis protein central BED35_02140 PF13806 Rieske-like [2Fe-2S] domain BED35_02145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED35_02145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED35_02145 PF04324 BFD-like [2Fe-2S] binding domain BED35_02145 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_02150 PF07969 Amidohydrolase family BED35_02155 PF07690 Major Facilitator Superfamily BED35_02160 PF00356 Bacterial regulatory proteins, lacI family BED35_02160 PF13377 Periplasmic binding protein-like domain BED35_02165 PF02056 Family 4 glycosyl hydrolase BED35_02165 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED35_02170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED35_02175 PF05872 BED35_02175 BED35_02180 PF00117 Glutamine amidotransferase class-I BED35_02185 PF00202 Aminotransferase class-III BED35_02195 PF00027 Cyclic nucleotide-binding domain BED35_02195 PF00325 Bacterial regulatory proteins, crp family BED35_02200 PF02566 OsmC-like protein BED35_02205 PF00485 Phosphoribulokinase / Uridine kinase family BED35_02210 PF06794 Uncharacterised protein family (UPF0270) BED35_02215 PF00561 alpha/beta hydrolase fold BED35_02220 PF01810 BED35_02220 BED35_02225 PF02567 Phenazine biosynthesis-like protein BED35_02230 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED35_02240 PF00528 Binding-protein-dependent transport system inner membrane component BED35_02245 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BED35_02250 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED35_02255 PF00535 Glycosyl transferase family 2 BED35_02260 PF00005 ABC transporter BED35_02260 PF12848 ABC transporter BED35_02265 PF02525 Flavodoxin-like fold BED35_02270 PF00999 Sodium/hydrogen exchanger family BED35_02270 PF02254 TrkA-N domain BED35_02275 PF09526 BED35_02275 BED35_02280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED35_02285 PF04102 SlyX BED35_02290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED35_02290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED35_02295 PF08348 BED35_02295 BED35_02295 PF13309 BED35_02295 BED35_02300 PF02635 DsrE/DsrF-like family BED35_02305 PF02635 DsrE/DsrF-like family BED35_02310 PF04077 DsrH like protein BED35_02315 PF00164 Ribosomal protein S12/S23 BED35_02320 PF00177 Ribosomal protein S7p/S5e BED35_02325 PF00009 Elongation factor Tu GTP binding domain BED35_02325 PF00679 Elongation factor G C-terminus BED35_02325 PF03144 Elongation factor Tu domain 2 BED35_02325 PF03764 Elongation factor G, domain IV BED35_02325 PF14492 Elongation Factor G, domain II BED35_02335 PF04324 BFD-like [2Fe-2S] binding domain BED35_02340 PF00210 Ferritin-like domain BED35_02345 PF00338 Ribosomal protein S10p/S20e BED35_02350 PF00297 Ribosomal protein L3 BED35_02355 PF00573 Ribosomal protein L4/L1 family BED35_02360 PF00276 Ribosomal protein L23 BED35_02365 PF00181 Ribosomal Proteins L2, RNA binding domain BED35_02365 PF03947 Ribosomal Proteins L2, C-terminal domain BED35_02370 PF00203 Ribosomal protein S19 BED35_02375 PF00237 Ribosomal protein L22p/L17e BED35_02380 PF00189 Ribosomal protein S3, C-terminal domain BED35_02380 PF07650 KH domain BED35_02385 PF00252 Ribosomal protein L16p/L10e BED35_02390 PF00831 Ribosomal L29 protein BED35_02395 PF00366 Ribosomal protein S17 BED35_02400 PF00238 Ribosomal protein L14p/L23e BED35_02405 PF00467 KOW motif BED35_02405 PF17136 BED35_02405 BED35_02410 PF00281 Ribosomal protein L5 BED35_02410 PF00673 ribosomal L5P family C-terminus BED35_02415 PF00253 Ribosomal protein S14p/S29e BED35_02420 PF00410 Ribosomal protein S8 BED35_02425 PF00347 Ribosomal protein L6 BED35_02430 PF00861 Ribosomal L18p/L5e family BED35_02435 PF00333 Ribosomal protein S5, N-terminal domain BED35_02435 PF03719 Ribosomal protein S5, C-terminal domain BED35_02440 PF00327 Ribosomal protein L30p/L7e BED35_02445 PF00828 Ribosomal protein L18e/L15 BED35_02450 PF00344 SecY translocase BED35_02455 PF00444 Ribosomal protein L36 BED35_02465 PF00411 Ribosomal protein S11 BED35_02470 PF00163 Ribosomal protein S4/S9 N-terminal domain BED35_02470 PF01479 S4 domain BED35_02475 PF01000 RNA polymerase Rpb3/RpoA insert domain BED35_02475 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BED35_02475 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BED35_02480 PF01196 Ribosomal protein L17 BED35_02485 PF09350 BED35_02485 BED35_02490 PF13411 MerR HTH family regulatory protein BED35_02495 PF03889 BED35_02495 BED35_02500 PF05598 BED35_02500 BED35_02500 PF13751 BED35_02500 BED35_02505 PF01741 Large-conductance mechanosensitive channel, MscL BED35_02510 PF02080 TrkA-C domain BED35_02510 PF02254 TrkA-N domain BED35_02515 PF01029 NusB family BED35_02515 PF01189 NOL1/NOP2/sun family BED35_02520 PF00551 Formyl transferase BED35_02520 PF02911 Formyl transferase, C-terminal domain BED35_02525 PF01327 Polypeptide deformylase BED35_02530 PF02481 DNA recombination-mediator protein A BED35_02535 PF04361 BED35_02535 BED35_02540 PF01396 BED35_02540 BED35_02545 PF01300 Telomere recombination BED35_02550 PF01488 Shikimate / quinate 5-dehydrogenase BED35_02550 PF08501 Shikimate dehydrogenase substrate binding domain BED35_02555 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_02590 PF04204 Homoserine O-succinyltransferase BED35_02595 PF01274 Malate synthase BED35_02600 PF00463 Isocitrate lyase family BED35_02605 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BED35_02610 PF01614 Bacterial transcriptional regulator BED35_02610 PF09339 IclR helix-turn-helix domain BED35_02615 PF00809 Pterin binding enzyme BED35_02615 PF02310 B12 binding domain BED35_02615 PF02574 Homocysteine S-methyltransferase BED35_02615 PF02607 B12 binding domain BED35_02615 PF02965 Vitamin B12 dependent methionine synthase, activation domain BED35_02620 PF05860 haemagglutination activity domain BED35_02620 PF13332 BED35_02620 BED35_02625 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED35_02625 PF08479 POTRA domain, ShlB-type BED35_02625 PF17287 BED35_02625 BED35_02635 PF00696 Amino acid kinase family BED35_02640 PF00342 Phosphoglucose isomerase BED35_02645 PF06146 BED35_02645 BED35_02650 PF01548 BED35_02650 BED35_02650 PF02371 BED35_02650 BED35_02655 PF00528 Binding-protein-dependent transport system inner membrane component BED35_02665 PF13416 Bacterial extracellular solute-binding protein BED35_02670 PF00005 ABC transporter BED35_02670 PF08402 TOBE domain BED35_02675 PF02264 LamB porin BED35_02680 PF07148 BED35_02680 BED35_02690 PF04345 Chorismate lyase BED35_02695 PF01040 UbiA prenyltransferase family BED35_02700 PF01553 Acyltransferase BED35_02705 PF01219 Prokaryotic diacylglycerol kinase BED35_02710 PF00717 Peptidase S24-like BED35_02710 PF01726 LexA DNA binding domain BED35_02715 PF05532 CsbD-like BED35_02720 PF01475 Ferric uptake regulator family BED35_02725 PF01757 BED35_02725 BED35_02730 PF01207 Dihydrouridine synthase (Dus) BED35_02735 PF09583 BED35_02735 BED35_02745 PF00107 Zinc-binding dehydrogenase BED35_02745 PF08240 Alcohol dehydrogenase GroES-like domain BED35_02750 PF00772 DnaB-like helicase N terminal domain BED35_02750 PF03796 DnaB-like helicase C terminal domain BED35_02760 PF00155 Aminotransferase class I and II BED35_02765 PF04237 YjbR BED35_02775 PF00436 Single-strand binding protein family BED35_02780 PF07804 HipA-like C-terminal domain BED35_02780 PF13657 HipA N-terminal domain BED35_02785 PF01381 Helix-turn-helix BED35_02790 PF00043 Glutathione S-transferase, C-terminal domain BED35_02790 PF02798 Glutathione S-transferase, N-terminal domain BED35_02795 PF00860 Permease family BED35_02800 PF00999 Sodium/hydrogen exchanger family BED35_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_02805 PF03466 LysR substrate binding domain BED35_02810 PF03788 BED35_02810 BED35_02820 PF00005 ABC transporter BED35_02825 PF00528 Binding-protein-dependent transport system inner membrane component BED35_02830 PF00528 Binding-protein-dependent transport system inner membrane component BED35_02835 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_02840 PF10142 PhoPQ-activated pathogenicity-related protein BED35_02845 PF01548 BED35_02845 BED35_02845 PF02371 BED35_02845 BED35_02850 PF03279 BED35_02850 BED35_02855 PF00939 Sodium:sulfate symporter transmembrane region BED35_02860 PF00313 'Cold-shock' DNA-binding domain BED35_02865 PF00313 'Cold-shock' DNA-binding domain BED35_02870 PF05433 BED35_02870 BED35_02880 PF02954 Bacterial regulatory protein, Fis family BED35_02885 PF01207 Dihydrouridine synthase (Dus) BED35_02890 PF06325 Ribosomal protein L11 methyltransferase (PrmA) BED35_02895 PF00474 Sodium:solute symporter family BED35_02900 PF06196 BED35_02900 BED35_02905 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BED35_02905 PF02785 Biotin carboxylase C-terminal domain BED35_02905 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED35_02910 PF00364 Biotin-requiring enzyme BED35_02915 PF01220 Dehydroquinase class II BED35_02920 PF01794 BED35_02920 BED35_02925 PF00174 Oxidoreductase molybdopterin binding domain BED35_02930 PF00107 Zinc-binding dehydrogenase BED35_02930 PF08240 Alcohol dehydrogenase GroES-like domain BED35_02935 PF00563 EAL domain BED35_02935 PF00990 GGDEF domain BED35_02935 PF17157 BED35_02935 BED35_02940 PF06723 MreB/Mbl protein BED35_02945 PF04085 rod shape-determining protein MreC BED35_02950 PF04093 BED35_02950 BED35_02955 PF02545 Maf-like protein BED35_02960 PF00575 S1 RNA binding domain BED35_02960 PF10150 Ribonuclease E/G family BED35_02965 PF13116 BED35_02965 BED35_02965 PF13502 BED35_02965 BED35_02970 PF00795 Carbon-nitrogen hydrolase BED35_02975 PF01523 Putative modulator of DNA gyrase BED35_02980 PF07804 HipA-like C-terminal domain BED35_02980 PF13657 HipA N-terminal domain BED35_02985 PF01381 Helix-turn-helix BED35_02995 PF10828 BED35_02995 BED35_03000 PF13539 D-alanyl-D-alanine carboxypeptidase BED35_03005 PF16083 BED35_03005 BED35_03010 PF03534 Salmonella virulence plasmid 65kDa B protein BED35_03010 PF12255 Insecticide toxin TcdB middle/C-terminal region BED35_03010 PF12256 Insecticide toxin TcdB middle/N-terminal region BED35_03030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_03030 PF03466 LysR substrate binding domain BED35_03035 PF07869 BED35_03035 BED35_03040 PF13437 HlyD family secretion protein BED35_03040 PF13533 Biotin-lipoyl like BED35_03045 PF04632 BED35_03045 BED35_03050 PF00171 Aldehyde dehydrogenase family BED35_03055 PF00545 ribonuclease BED35_03060 PF01337 Barstar (barnase inhibitor) BED35_03065 PF04751 Protein of unknown function (DUF615) BED35_03070 PF00589 Phage integrase family BED35_03100 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED35_03105 PF01507 Phosphoadenosine phosphosulfate reductase family BED35_03110 PF05840 BED35_03110 BED35_03115 PF04606 BED35_03115 BED35_03125 PF03237 Terminase-like family BED35_03125 PF06056 Putative ATPase subunit of terminase (gpP-like) BED35_03125 PF17289 BED35_03125 BED35_03130 PF05929 BED35_03130 BED35_03135 PF05125 BED35_03135 BED35_03140 PF05944 BED35_03140 BED35_03145 PF05926 BED35_03145 BED35_03150 PF06891 BED35_03150 BED35_03165 PF10772 BED35_03165 BED35_03170 PF04550 BED35_03170 BED35_03175 PF13539 D-alanyl-D-alanine carboxypeptidase BED35_03185 PF10963 BED35_03185 BED35_03190 PF10145 BED35_03190 BED35_03195 PF10761 BED35_03195 BED35_03200 PF04865 BED35_03200 BED35_03215 PF02413 BED35_03215 BED35_03240 PF14355 BED35_03240 BED35_03245 PF01523 Putative modulator of DNA gyrase BED35_03250 PF01548 BED35_03250 BED35_03250 PF02371 BED35_03250 BED35_03255 PF07361 Cytochrome b562 BED35_03260 PF01272 Transcription elongation factor, GreA/GreB, C-term BED35_03260 PF14760 Rnk N-terminus BED35_03265 PF00874 PRD domain BED35_03270 PF14272 BED35_03270 BED35_03275 PF14189 BED35_03275 BED35_03280 PF14188 BED35_03280 BED35_03285 PF14187 BED35_03285 BED35_03290 PF01979 Amidohydrolase family BED35_03295 PF03841 L-seryl-tRNA selenium transferase BED35_03300 PF07071 Protein of unknown function (DUF1341) BED35_03310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_03310 PF00874 PRD domain BED35_03310 PF05043 Mga helix-turn-helix domain BED35_03310 PF08279 HTH domain BED35_03315 PF01381 Helix-turn-helix BED35_03320 PF05015 Plasmid maintenance system killer protein BED35_03330 PF00356 Bacterial regulatory proteins, lacI family BED35_03330 PF13377 Periplasmic binding protein-like domain BED35_03340 PF00128 Alpha amylase, catalytic domain BED35_03340 PF11941 Domain of unknown function (DUF3459) BED35_03345 PF00227 Proteasome subunit BED35_03350 PF01841 Transglutaminase-like superfamily BED35_03350 PF08379 BED35_03350 BED35_03355 PF04168 BED35_03355 BED35_03360 PF14403 BED35_03360 BED35_03365 PF01042 Endoribonuclease L-PSP BED35_03370 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BED35_03370 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BED35_03375 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED35_03375 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED35_03380 PF00381 PTS HPr component phosphorylation site BED35_03385 PF03668 BED35_03385 BED35_03390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_03395 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED35_03400 PF00309 BED35_03400 BED35_03400 PF04552 Sigma-54, DNA binding domain BED35_03400 PF04963 Sigma-54 factor, core binding domain BED35_03405 PF00005 ABC transporter BED35_03405 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED35_03410 PF03968 OstA-like protein BED35_03415 PF06835 Lipopolysaccharide-assembly, LptC-related BED35_03420 PF08282 haloacid dehalogenase-like hydrolase BED35_03425 PF00571 CBS domain BED35_03425 PF01380 SIS domain BED35_03435 PF00005 ABC transporter BED35_03440 PF02405 BED35_03440 BED35_03445 PF02470 BED35_03445 BED35_03450 PF05494 Toluene tolerance, Ttg2 BED35_03455 PF13466 STAS domain BED35_03460 PF01722 BolA-like protein BED35_03465 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED35_03470 PF13180 PDZ domain BED35_03470 PF13365 Trypsin-like peptidase domain BED35_03475 PF00595 PDZ domain (Also known as DHR or GLGF) BED35_03475 PF13180 PDZ domain BED35_03475 PF13365 Trypsin-like peptidase domain BED35_03480 PF06295 BED35_03480 BED35_03485 PF03969 AFG1-like ATPase BED35_03490 PF00572 Ribosomal protein L13 BED35_03495 PF00380 Ribosomal protein S9/S16 BED35_03500 PF00043 Glutathione S-transferase, C-terminal domain BED35_03500 PF02798 Glutathione S-transferase, N-terminal domain BED35_03505 PF04386 Stringent starvation protein B BED35_03520 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_03520 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BED35_03525 PF00310 Glutamine amidotransferases class-II BED35_03525 PF01493 GXGXG motif BED35_03525 PF01645 Conserved region in glutamate synthase BED35_03525 PF04898 Glutamate synthase central domain BED35_03530 PF04055 Radical SAM superfamily BED35_03530 PF16199 BED35_03530 BED35_03535 PF00072 Response regulator receiver domain BED35_03535 PF00512 His Kinase A (phospho-acceptor) domain BED35_03535 PF00989 PAS fold BED35_03535 PF01627 Hpt domain BED35_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_03545 PF00912 Transglycosylase BED35_03550 PF04972 BON domain BED35_03555 PF13580 SIS domain BED35_03560 PF02021 Uncharacterised protein family UPF0102 BED35_03565 PF04348 LppC putative lipoprotein BED35_03570 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_03590 PF00239 Resolvase, N terminal domain BED35_03600 PF00145 C-5 cytosine-specific DNA methylase BED35_03610 PF01381 Helix-turn-helix BED35_03620 PF16970 BED35_03620 BED35_03625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_03625 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_03630 PF00577 Outer membrane usher protein BED35_03630 PF13953 PapC C-terminal domain BED35_03630 PF13954 PapC N-terminal domain BED35_03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_03640 PF03466 LysR substrate binding domain BED35_03645 PF00248 Aldo/keto reductase family BED35_03650 PF00107 Zinc-binding dehydrogenase BED35_03650 PF08240 Alcohol dehydrogenase GroES-like domain BED35_03655 PF02678 Pirin BED35_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_03660 PF03466 LysR substrate binding domain BED35_03665 PF13409 Glutathione S-transferase, N-terminal domain BED35_03665 PF13410 Glutathione S-transferase, C-terminal domain BED35_03670 PF07681 BED35_03670 BED35_03675 PF13997 BED35_03675 BED35_03680 PF07332 BED35_03680 BED35_03685 PF05957 BED35_03685 BED35_03690 PF06476 BED35_03690 BED35_03695 PF13721 SecD export protein N-terminal TM region BED35_03700 PF09335 BED35_03700 BED35_03710 PF00392 Bacterial regulatory proteins, gntR family BED35_03710 PF07729 FCD domain BED35_03715 PF07690 Major Facilitator Superfamily BED35_03720 PF02614 Glucuronate isomerase BED35_03725 PF01232 Mannitol dehydrogenase Rossmann domain BED35_03725 PF08125 Mannitol dehydrogenase C-terminal domain BED35_03730 PF04295 BED35_03730 BED35_03730 PF08666 SAF domain BED35_03735 PF10688 BED35_03735 BED35_03740 PF00375 Sodium:dicarboxylate symporter family BED35_03745 PF03741 BED35_03745 BED35_03755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED35_03760 PF01863 Protein of unknown function DUF45 BED35_03765 PF03797 Autotransporter beta-domain BED35_03775 PF03797 Autotransporter beta-domain BED35_03780 PF05175 Methyltransferase small domain BED35_03785 PF01548 BED35_03785 BED35_03785 PF02371 BED35_03785 BED35_03790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BED35_03790 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_03795 PF00892 EamA-like transporter family BED35_03800 PF03729 BED35_03800 BED35_03810 PF00282 Pyridoxal-dependent decarboxylase conserved domain BED35_03815 PF13520 Amino acid permease BED35_03820 PF04960 Glutaminase BED35_03830 PF00872 BED35_03830 BED35_03835 PF00367 phosphotransferase system, EIIB BED35_03840 PF13580 SIS domain BED35_03845 PF01380 SIS domain BED35_03845 PF01418 Helix-turn-helix domain, rpiR family BED35_03850 PF00933 Glycosyl hydrolase family 3 N terminal domain BED35_03860 PF07075 Protein of unknown function (DUF1343) BED35_03870 PF01548 BED35_03870 BED35_03870 PF02371 BED35_03870 BED35_03875 PF00140 Sigma-70 factor, region 1 BED35_03875 PF03979 Sigma-70 factor, region 1 BED35_03875 PF04539 Sigma-70 region 3 BED35_03875 PF04542 Sigma-70 region 2 BED35_03875 PF04545 Sigma-70, region 4 BED35_03875 PF04546 Sigma-70, non-essential region BED35_03880 PF01807 CHC2 zinc finger BED35_03880 PF08275 DNA primase catalytic core, N-terminal domain BED35_03880 PF08278 DNA primase DnaG DnaB-binding BED35_03880 PF10410 DnaB-helicase binding domain of primase BED35_03880 PF13155 Toprim-like BED35_03885 PF01165 Ribosomal protein S21 BED35_03890 PF00814 Glycoprotease family BED35_03895 PF02660 BED35_03895 BED35_03900 PF02152 Dihydroneopterin aldolase BED35_03905 PF02673 BED35_03905 BED35_03910 PF01743 Poly A polymerase head domain BED35_03910 PF01966 HD domain BED35_03910 PF12627 Probable RNA and SrmB- binding site of polymerase A BED35_03915 PF08239 Bacterial SH3 domain BED35_03920 PF01928 CYTH domain BED35_03925 PF03710 Glutamate-ammonia ligase adenylyltransferase BED35_03925 PF08335 GlnD PII-uridylyltransferase BED35_03930 PF00294 pfkB family carbohydrate kinase BED35_03930 PF01467 Cytidylyltransferase BED35_03935 PF13520 Amino acid permease BED35_03940 PF04380 BED35_03940 BED35_03945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BED35_03950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BED35_03955 PF03738 Glutathionylspermidine synthase preATP-grasp BED35_03960 PF06693 BED35_03960 BED35_03970 PF02321 Outer membrane efflux protein BED35_03975 PF00293 NUDIX domain BED35_03980 PF06853 BED35_03980 BED35_03985 PF00149 Calcineurin-like phosphoesterase BED35_03990 PF05728 Uncharacterised protein family (UPF0227) BED35_03995 PF00204 DNA gyrase B BED35_03995 PF00986 DNA gyrase B subunit, carboxyl terminus BED35_03995 PF01751 Toprim domain BED35_03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_04000 PF03466 LysR substrate binding domain BED35_04005 PF03992 Antibiotic biosynthesis monooxygenase BED35_04010 PF02525 Flavodoxin-like fold BED35_04015 PF00521 DNA gyrase/topoisomerase IV, subunit A BED35_04015 PF03989 DNA gyrase C-terminal domain, beta-propeller BED35_04020 PF01553 Acyltransferase BED35_04025 PF00394 Multicopper oxidase BED35_04025 PF07731 Multicopper oxidase BED35_04025 PF07732 Multicopper oxidase BED35_04030 PF04055 Radical SAM superfamily BED35_04030 PF08497 BED35_04030 BED35_04030 PF11842 BED35_04030 BED35_04035 PF00248 Aldo/keto reductase family BED35_04040 PF00465 Iron-containing alcohol dehydrogenase BED35_04045 PF06719 BED35_04045 BED35_04045 PF12833 Helix-turn-helix domain BED35_04050 PF09335 BED35_04050 BED35_04055 PF01053 Cys/Met metabolism PLP-dependent enzyme BED35_04060 PF01618 BED35_04060 BED35_04065 PF02472 Biopolymer transport protein ExbD/TolR BED35_04070 PF00092 von Willebrand factor type A domain BED35_04075 PF16964 BED35_04075 BED35_04080 PF07811 BED35_04080 BED35_04095 PF00482 Type II secretion system (T2SS), protein F BED35_04100 PF00437 Type II/IV secretion system protein BED35_04115 PF00263 BED35_04115 BED35_04115 PF13629 BED35_04115 BED35_04125 PF01478 Type IV leader peptidase family BED35_04135 PF00486 Transcriptional regulatory protein, C terminal BED35_04140 PF13532 2OG-Fe(II) oxygenase superfamily BED35_04145 PF00873 AcrB/AcrD/AcrF family BED35_04150 PF13683 BED35_04150 BED35_04170 PF12833 Helix-turn-helix domain BED35_04175 PF01527 Transposase BED35_04185 PF02321 Outer membrane efflux protein BED35_04195 PF00005 ABC transporter BED35_04210 PF00665 Integrase core domain BED35_04215 PF01527 Transposase BED35_04225 PF00756 Putative esterase BED35_04225 PF11806 Domain of unknown function (DUF3327) BED35_04230 PF00005 ABC transporter BED35_04235 PF01032 FecCD transport family BED35_04240 PF01032 FecCD transport family BED35_04245 PF01497 Periplasmic binding protein BED35_04255 PF01370 NAD dependent epimerase/dehydratase family BED35_04260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_04260 PF02203 Tar ligand binding domain homologue BED35_04270 PF00771 FHIPEP family BED35_04275 PF01312 FlhB HrpN YscU SpaS Family BED35_04280 PF01311 BED35_04280 BED35_04285 PF01313 BED35_04285 BED35_04290 PF00813 BED35_04290 BED35_04295 PF01052 Surface presentation of antigens (SPOA) BED35_04300 PF01052 Surface presentation of antigens (SPOA) BED35_04305 PF00158 Sigma-54 interaction domain BED35_04305 PF02954 Bacterial regulatory protein, Fis family BED35_04310 PF02049 BED35_04310 BED35_04320 PF01706 FliG C-terminal domain BED35_04320 PF14841 FliG middle domain BED35_04320 PF14842 FliG N-terminal domain BED35_04325 PF02108 BED35_04325 BED35_04325 PF09811 BED35_04325 BED35_04330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_04335 PF02050 Flagellar FliJ protein BED35_04340 PF05130 FlgN protein BED35_04345 PF04316 Anti-sigma-28 factor, FlgM BED35_04350 PF13144 SAF-like BED35_04355 PF00460 Flagella basal body rod protein BED35_04360 PF00460 Flagella basal body rod protein BED35_04360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_04365 PF03963 BED35_04365 BED35_04365 PF13860 FlgD Ig-like domain BED35_04365 PF13861 FlgD Tudor-like domain BED35_04370 PF00460 Flagella basal body rod protein BED35_04370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_04370 PF07559 Flagellar basal body protein FlaE BED35_04375 PF00460 Flagella basal body rod protein BED35_04375 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_04380 PF00460 Flagella basal body rod protein BED35_04380 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_04385 PF02107 BED35_04385 BED35_04390 PF02119 BED35_04390 BED35_04395 PF10135 BED35_04395 BED35_04400 PF00460 Flagella basal body rod protein BED35_04400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_04405 PF00669 Bacterial flagellin N-terminal helical region BED35_04405 PF00700 Bacterial flagellin C-terminal helical region BED35_04425 PF00669 Bacterial flagellin N-terminal helical region BED35_04425 PF00700 Bacterial flagellin C-terminal helical region BED35_04435 PF02561 Flagellar protein FliS BED35_04450 PF03748 BED35_04450 BED35_04455 PF04539 Sigma-70 region 3 BED35_04455 PF04542 Sigma-70 region 2 BED35_04455 PF04545 Sigma-70, region 4 BED35_04460 PF01618 BED35_04460 BED35_04465 PF00691 OmpA family BED35_04465 PF13677 BED35_04465 BED35_04470 PF05433 BED35_04470 BED35_04475 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED35_04475 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BED35_04480 PF13247 4Fe-4S dicluster domain BED35_04490 PF00374 Nickel-dependent hydrogenase BED35_04495 PF01750 Hydrogenase maturation protease BED35_04500 PF11939 Protein of unknown function (DUF3457) BED35_04505 PF01155 Hydrogenase expression/synthesis hypA family BED35_04510 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED35_04515 PF01455 HupF/HypC family BED35_04520 PF01924 Hydrogenase formation hypA family BED35_04525 PF00586 AIR synthase related protein, N-terminal domain BED35_04525 PF02769 AIR synthase related protein, C-terminal domain BED35_04530 PF00708 Acylphosphatase BED35_04530 PF01300 Telomere recombination BED35_04530 PF07503 HypF finger BED35_04535 PF02661 Fic/DOC family BED35_04535 PF08279 HTH domain BED35_04540 PF02110 Hydroxyethylthiazole kinase family BED35_04550 PF11769 BED35_04550 BED35_04555 PF00563 EAL domain BED35_04555 PF00989 PAS fold BED35_04555 PF00990 GGDEF domain BED35_04555 PF05228 BED35_04555 BED35_04560 PF16576 BED35_04560 BED35_04575 PF00083 Sugar (and other) transporter BED35_04575 PF08946 Osmosensory transporter coiled coil BED35_04585 PF00857 Isochorismatase family BED35_04590 PF01895 PhoU domain BED35_04590 PF02690 BED35_04590 BED35_04595 PF01156 Inosine-uridine preferring nucleoside hydrolase BED35_04600 PF00356 Bacterial regulatory proteins, lacI family BED35_04600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_04605 PF01548 BED35_04605 BED35_04605 PF02371 BED35_04605 BED35_04610 PF00083 Sugar (and other) transporter BED35_04620 PF00155 Aminotransferase class I and II BED35_04620 PF00392 Bacterial regulatory proteins, gntR family BED35_04630 PF00891 O-methyltransferase BED35_04635 PF00891 O-methyltransferase BED35_04640 PF01497 Periplasmic binding protein BED35_04645 PF01032 FecCD transport family BED35_04650 PF01032 FecCD transport family BED35_04660 PF00557 Metallopeptidase family M24 BED35_04665 PF11903 BED35_04665 BED35_04675 PF17090 BED35_04675 BED35_04680 PF13437 HlyD family secretion protein BED35_04680 PF13533 Biotin-lipoyl like BED35_04685 PF04632 BED35_04685 BED35_04695 PF01276 Orn/Lys/Arg decarboxylase, major domain BED35_04695 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED35_04695 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED35_04700 PF13520 Amino acid permease BED35_04710 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BED35_04720 PF03811 BED35_04720 BED35_04720 PF12759 BED35_04720 BED35_04725 PF07514 Putative helicase BED35_04725 PF07515 Protein of unknown function (DUF1528) BED35_04740 PF00589 Phage integrase family BED35_04755 PF01276 Orn/Lys/Arg decarboxylase, major domain BED35_04755 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED35_04755 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED35_04760 PF01925 BED35_04760 BED35_04765 PF01464 Transglycosylase SLT domain BED35_04765 PF11873 Domain of unknown function (DUF3393) BED35_04770 PF04362 Bacterial Fe(2+) trafficking BED35_04775 PF00633 Helix-hairpin-helix motif BED35_04775 PF00730 HhH-GPD superfamily base excision DNA repair protein BED35_04775 PF10576 Iron-sulfur binding domain of endonuclease III BED35_04775 PF14815 NUDIX domain BED35_04780 PF02390 Putative methyltransferase BED35_04785 PF04320 BED35_04785 BED35_04790 PF04960 Glutaminase BED35_04795 PF11101 BED35_04795 BED35_04800 PF04055 Radical SAM superfamily BED35_04800 PF06969 HemN C-terminal domain BED35_04805 PF01725 Ham1 family BED35_04810 PF02594 Uncharacterised ACR, YggU family COG1872 BED35_04815 PF02325 BED35_04815 BED35_04820 PF03807 NADP oxidoreductase coenzyme F420-dependent BED35_04820 PF14748 Pyrroline-5-carboxylate reductase dimerisation BED35_04825 PF01168 Alanine racemase, N-terminal domain BED35_04830 PF00437 Type II/IV secretion system protein BED35_04835 PF04371 Porphyromonas-type peptidyl-arginine deiminase BED35_04840 PF00795 Carbon-nitrogen hydrolase BED35_04845 PF03652 Uncharacterised protein family (UPF0081) BED35_04850 PF02622 Uncharacterized ACR, COG1678 BED35_04855 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BED35_04855 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BED35_04860 PF04452 RNA methyltransferase BED35_04865 PF04231 Endonuclease I BED35_04870 PF10263 BED35_04870 BED35_04870 PF17283 BED35_04870 BED35_04875 PF01022 Bacterial regulatory protein, arsR family BED35_04880 PF00872 BED35_04880 BED35_04885 PF04143 BED35_04885 BED35_04890 PF04143 BED35_04890 BED35_04895 PF00438 S-adenosylmethionine synthetase, N-terminal domain BED35_04895 PF02772 S-adenosylmethionine synthetase, central domain BED35_04895 PF02773 S-adenosylmethionine synthetase, C-terminal domain BED35_04900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED35_04905 PF00355 Rieske [2Fe-2S] domain BED35_04910 PF01435 Peptidase family M48 BED35_04915 PF00456 Transketolase, thiamine diphosphate binding domain BED35_04915 PF02779 Transketolase, pyrimidine binding domain BED35_04915 PF02780 Transketolase, C-terminal domain BED35_04920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED35_04920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED35_04925 PF00162 Phosphoglycerate kinase BED35_04930 PF01116 Fructose-bisphosphate aldolase class-II BED35_04935 PF00102 Protein-tyrosine phosphatase BED35_04940 PF00924 Mechanosensitive ion channel BED35_04940 PF05552 Conserved TM helix BED35_04945 PF01548 BED35_04945 BED35_04945 PF02371 BED35_04945 BED35_04950 PF01810 BED35_04950 BED35_04955 PF04402 Protein of unknown function (DUF541) BED35_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_04960 PF03466 LysR substrate binding domain BED35_04965 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BED35_04970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED35_04970 PF01842 ACT domain BED35_04970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED35_04975 PF13518 Helix-turn-helix domain BED35_05000 PF00080 Copper/zinc superoxide dismutase (SODC) BED35_05005 PF04055 Radical SAM superfamily BED35_05005 PF13394 4Fe-4S single cluster domain BED35_05025 PF01242 6-pyruvoyl tetrahydropterin synthase BED35_05030 PF00175 Oxidoreductase NAD-binding domain BED35_05030 PF00258 Flavodoxin BED35_05030 PF00667 FAD binding domain BED35_05035 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED35_05035 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED35_05040 PF01507 Phosphoadenosine phosphosulfate reductase family BED35_05045 PF15919 BED35_05045 BED35_05050 PF07927 YcfA-like protein BED35_05055 PF04389 Peptidase family M28 BED35_05060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_05060 PF10414 Sirohaem synthase dimerisation region BED35_05060 PF13241 Putative NAD(P)-binding BED35_05060 PF14824 Sirohaem biosynthesis protein central BED35_05065 PF01507 Phosphoadenosine phosphosulfate reductase family BED35_05070 PF00009 Elongation factor Tu GTP binding domain BED35_05075 PF01583 Adenylylsulphate kinase BED35_05080 PF12084 BED35_05080 BED35_05085 PF04977 Septum formation initiator BED35_05090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BED35_05095 PF02542 YgbB family BED35_05100 PF01142 tRNA pseudouridine synthase D (TruD) BED35_05105 PF01975 Survival protein SurE BED35_05110 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BED35_05115 PF01476 LysM domain BED35_05115 PF01551 Peptidase family M23 BED35_05120 PF00140 Sigma-70 factor, region 1 BED35_05120 PF04539 Sigma-70 region 3 BED35_05120 PF04542 Sigma-70 region 2 BED35_05120 PF04545 Sigma-70, region 4 BED35_05125 PF00488 MutS domain V BED35_05125 PF01624 MutS domain I BED35_05125 PF05188 MutS domain II BED35_05125 PF05190 MutS family domain IV BED35_05125 PF05192 MutS domain III BED35_05130 PF04932 BED35_05130 BED35_05130 PF11846 BED35_05130 BED35_05130 PF15864 BED35_05130 BED35_05135 PF04703 FaeA-like protein BED35_05140 PF00419 Fimbrial protein BED35_05150 PF00577 Outer membrane usher protein BED35_05150 PF13953 PapC C-terminal domain BED35_05150 PF13954 PapC N-terminal domain BED35_05155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_05155 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_05160 PF00419 Fimbrial protein BED35_05165 PF00419 Fimbrial protein BED35_05170 PF00419 Fimbrial protein BED35_05180 PF15959 BED35_05180 BED35_05185 PF01323 DSBA-like thioredoxin domain BED35_05195 PF00005 ABC transporter BED35_05195 PF00664 ABC transporter transmembrane region BED35_05195 PF03412 Peptidase C39 family BED35_05200 PF16576 BED35_05200 BED35_05205 PF00005 ABC transporter BED35_05205 PF02687 BED35_05205 BED35_05205 PF12704 MacB-like periplasmic core domain BED35_05210 PF02321 Outer membrane efflux protein BED35_05215 PF00109 Beta-ketoacyl synthase, N-terminal domain BED35_05215 PF02801 Beta-ketoacyl synthase, C-terminal domain BED35_05220 PF01575 MaoC like domain BED35_05225 PF00550 Phosphopantetheine attachment site BED35_05230 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_05235 PF00155 Aminotransferase class I and II BED35_05240 PF00034 Cytochrome c BED35_05240 PF03150 Di-haem cytochrome c peroxidase BED35_05240 PF14376 BED35_05240 BED35_05245 PF07883 Cupin domain BED35_05250 PF00009 Elongation factor Tu GTP binding domain BED35_05250 PF00679 Elongation factor G C-terminus BED35_05250 PF03144 Elongation factor Tu domain 2 BED35_05250 PF03764 Elongation factor G, domain IV BED35_05250 PF14492 Elongation Factor G, domain II BED35_05255 PF12840 Helix-turn-helix domain BED35_05260 PF00107 Zinc-binding dehydrogenase BED35_05260 PF08240 Alcohol dehydrogenase GroES-like domain BED35_05265 PF03613 BED35_05265 BED35_05270 PF03609 BED35_05270 BED35_05280 PF03610 PTS system fructose IIA component BED35_05285 PF04198 Putative sugar-binding domain BED35_05290 PF00795 Carbon-nitrogen hydrolase BED35_05295 PF03861 ANTAR domain BED35_05300 PF13433 Periplasmic binding protein domain BED35_05305 PF03069 Acetamidase/Formamidase family BED35_05310 PF00005 ABC transporter BED35_05315 PF00005 ABC transporter BED35_05320 PF02653 BED35_05320 BED35_05325 PF02653 BED35_05325 BED35_05330 PF13433 Periplasmic binding protein domain BED35_05335 PF05681 BED35_05335 BED35_05335 PF05683 Fumarase C-terminus BED35_05340 PF00384 Molybdopterin oxidoreductase BED35_05340 PF01568 Molydopterin dinucleotide binding domain BED35_05340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED35_05345 PF12800 4Fe-4S binding domain BED35_05345 PF13247 4Fe-4S dicluster domain BED35_05350 PF04976 BED35_05350 BED35_05355 PF02613 Nitrate reductase delta subunit BED35_05360 PF01548 BED35_05360 BED35_05360 PF02371 BED35_05360 BED35_05365 PF07690 Major Facilitator Superfamily BED35_05370 PF02464 Competence-damaged protein BED35_05375 PF00154 recA bacterial DNA recombination protein BED35_05380 PF02631 RecX family BED35_05385 PF01411 tRNA synthetases class II (A) BED35_05385 PF02272 DHHA1 domain BED35_05385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED35_05390 PF02599 Global regulator protein family BED35_05410 PF13419 Haloacid dehalogenase-like hydrolase BED35_05420 PF04262 Glutamate-cysteine ligase BED35_05425 PF02664 S-Ribosylhomocysteinase (LuxS) BED35_05430 PF03471 Transporter associated domain BED35_05435 PF01548 BED35_05435 BED35_05435 PF02371 BED35_05435 BED35_05445 PF01578 BED35_05445 BED35_05450 PF00448 SRP54-type protein, GTPase domain BED35_05450 PF02881 SRP54-type protein, helical bundle domain BED35_05450 PF02978 Signal peptide binding domain BED35_05455 PF00886 Ribosomal protein S16 BED35_05460 PF01782 RimM N-terminal domain BED35_05460 PF05239 PRC-barrel domain BED35_05465 PF01746 tRNA (Guanine-1)-methyltransferase BED35_05470 PF01245 Ribosomal protein L19 BED35_05480 PF03605 BED35_05480 BED35_05485 PF00072 Response regulator receiver domain BED35_05485 PF04397 LytTr DNA-binding domain BED35_05490 PF00793 DAHP synthetase I family BED35_05495 PF01817 Chorismate mutase type II BED35_05495 PF02153 Prephenate dehydrogenase BED35_05500 PF00800 Prephenate dehydratase BED35_05500 PF01817 Chorismate mutase type II BED35_05505 PF01548 BED35_05505 BED35_05505 PF02371 BED35_05505 BED35_05510 PF00004 ATPase family associated with various cellular activities (AAA) BED35_05510 PF02861 Clp amino terminal domain BED35_05510 PF07724 AAA domain (Cdc48 subfamily) BED35_05510 PF10431 C-terminal, D2-small domain, of ClpB protein BED35_05515 PF02578 Multi-copper polyphenol oxidoreductase laccase BED35_05520 PF00849 RNA pseudouridylate synthase BED35_05520 PF01479 S4 domain BED35_05525 PF13525 Outer membrane lipoprotein BED35_05535 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED35_05540 PF00872 BED35_05540 BED35_05545 PF01548 BED35_05545 BED35_05545 PF02371 BED35_05545 BED35_05575 PF10043 BED35_05575 BED35_05580 PF13091 PLD-like domain BED35_05585 PF00583 Acetyltransferase (GNAT) family BED35_05585 PF13380 CoA binding domain BED35_05585 PF13549 ATP-grasp domain BED35_05585 PF13607 Succinyl-CoA ligase like flavodoxin domain BED35_05590 PF03942 BED35_05590 BED35_05595 PF00085 Thioredoxin BED35_05600 PF00588 SpoU rRNA Methylase family BED35_05600 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED35_05605 PF07690 Major Facilitator Superfamily BED35_05610 PF00529 HlyD family secretion protein BED35_05610 PF16576 BED35_05610 BED35_05615 PF02321 Outer membrane efflux protein BED35_05620 PF01047 MarR family BED35_05625 PF05437 BED35_05625 BED35_05630 PF03591 BED35_05630 BED35_05635 PF07690 Major Facilitator Superfamily BED35_05645 PF11533 Protein of unknown function (DUF3225) BED35_05650 PF01425 Amidase BED35_05655 PF13318 BED35_05655 BED35_05660 PF01380 SIS domain BED35_05660 PF01418 Helix-turn-helix domain, rpiR family BED35_05665 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_05670 PF00528 Binding-protein-dependent transport system inner membrane component BED35_05675 PF00528 Binding-protein-dependent transport system inner membrane component BED35_05680 PF00005 ABC transporter BED35_05695 PF00795 Carbon-nitrogen hydrolase BED35_05700 PF00155 Aminotransferase class I and II BED35_05705 PF00589 Phage integrase family BED35_05705 PF12167 BED35_05705 BED35_05710 PF06806 Putative excisionase (DUF1233) BED35_05715 PF05063 BED35_05715 BED35_05755 PF03837 BED35_05755 BED35_05760 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED35_05800 PF10965 BED35_05800 BED35_05805 PF15968 BED35_05805 BED35_05810 PF15969 BED35_05810 BED35_05815 PF00717 Peptidase S24-like BED35_05815 PF01381 Helix-turn-helix BED35_05820 PF09048 Cro BED35_05825 PF05269 Bacteriophage CII protein BED35_05835 PF04492 BED35_05835 BED35_05840 PF01695 IstB-like ATP binding protein BED35_05855 PF04448 BED35_05855 BED35_05865 PF05772 NinB protein BED35_05875 PF07102 Protein of unknown function (DUF1364) BED35_05880 PF05866 Endodeoxyribonuclease RusA BED35_05890 PF03589 Antitermination protein BED35_05905 PF00959 Phage lysozyme BED35_05910 PF03245 BED35_05910 BED35_05915 PF09669 BED35_05915 BED35_05920 PF11133 Head fiber protein BED35_05945 PF06381 BED35_05945 BED35_05950 PF04233 BED35_05950 BED35_05960 PF09979 BED35_05960 BED35_05980 PF13262 BED35_05980 BED35_06000 PF11863 BED35_06000 BED35_06015 PF01464 Transglycosylase SLT domain BED35_06045 PF06890 Bacteriophage Mu Gp45 protein BED35_06055 PF04865 BED35_06055 BED35_06075 PF00596 Class II Aldolase and Adducin N-terminal domain BED35_06085 PF03079 ARD/ARD' family BED35_06090 PF01008 Initiation factor 2 subunit family BED35_06095 PF01636 Phosphotransferase enzyme family BED35_06100 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED35_06100 PF08479 POTRA domain, ShlB-type BED35_06115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED35_06115 PF02770 Acyl-CoA dehydrogenase, middle domain BED35_06115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BED35_06115 PF09317 BED35_06115 BED35_06120 PF13580 SIS domain BED35_06125 PF13230 Glutamine amidotransferases class-II BED35_06130 PF03734 L,D-transpeptidase catalytic domain BED35_06135 PF05896 BED35_06135 BED35_06135 PF11973 BED35_06135 BED35_06140 PF03116 BED35_06140 BED35_06145 PF04205 FMN-binding domain BED35_06150 PF02508 BED35_06150 BED35_06160 PF00111 2Fe-2S iron-sulfur cluster binding domain BED35_06160 PF00175 Oxidoreductase NAD-binding domain BED35_06160 PF00970 Oxidoreductase FAD-binding domain BED35_06165 PF02424 ApbE family BED35_06170 PF04400 BED35_06170 BED35_06175 PF03009 Glycerophosphoryl diester phosphodiesterase family BED35_06180 PF01820 D-ala D-ala ligase N-terminus BED35_06180 PF07478 D-ala D-ala ligase C-terminus BED35_06185 PF08348 BED35_06185 BED35_06185 PF13309 BED35_06185 BED35_06190 PF00291 Pyridoxal-phosphate dependent enzyme BED35_06200 PF00817 impB/mucB/samB family BED35_06200 PF11798 IMS family HHH motif BED35_06200 PF11799 impB/mucB/samB family C-terminal domain BED35_06205 PF01546 Peptidase family M20/M25/M40 BED35_06205 PF07687 Peptidase dimerisation domain BED35_06210 PF00156 Phosphoribosyl transferase domain BED35_06215 PF01548 BED35_06215 BED35_06215 PF02371 BED35_06215 BED35_06220 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) BED35_06225 PF07417 Transcriptional regulator Crl BED35_06230 PF00696 Amino acid kinase family BED35_06230 PF01472 PUA domain BED35_06235 PF00171 Aldehyde dehydrogenase family BED35_06240 PF00392 Bacterial regulatory proteins, gntR family BED35_06240 PF07702 UTRA domain BED35_06245 PF00367 phosphotransferase system, EIIB BED35_06245 PF02378 Phosphotransferase system, EIIC BED35_06250 PF02056 Family 4 glycosyl hydrolase BED35_06250 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED35_06255 PF07238 PilZ domain BED35_06255 PF07317 Flagellar regulator YcgR BED35_06260 PF06165 Glycosyltransferase family 36 BED35_06260 PF10091 Putative glucoamylase BED35_06260 PF17167 BED35_06260 BED35_06270 PF00583 Acetyltransferase (GNAT) family BED35_06275 PF08241 Methyltransferase domain BED35_06280 PF07338 Protein of unknown function (DUF1471) BED35_06295 PF00593 TonB dependent receptor BED35_06295 PF07715 TonB-dependent Receptor Plug Domain BED35_06300 PF01202 Shikimate kinase BED35_06305 PF06865 Protein of unknown function (DUF1255) BED35_06310 PF04381 Putative exonuclease, RdgC BED35_06315 PF00480 ROK family BED35_06320 PF13476 AAA domain BED35_06320 PF13558 Putative exonuclease SbcCD, C subunit BED35_06325 PF00149 Calcineurin-like phosphoesterase BED35_06325 PF12320 Type 5 capsule protein repressor C-terminal domain BED35_06330 PF00072 Response regulator receiver domain BED35_06330 PF00486 Transcriptional regulatory protein, C terminal BED35_06335 PF00512 His Kinase A (phospho-acceptor) domain BED35_06335 PF00989 PAS fold BED35_06335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_06335 PF11808 BED35_06335 BED35_06340 PF12849 PBP superfamily domain BED35_06345 PF05525 BED35_06345 BED35_06350 PF00324 Amino acid permease BED35_06355 PF00128 Alpha amylase, catalytic domain BED35_06355 PF02903 Alpha amylase, N-terminal ig-like domain BED35_06360 PF00106 short chain dehydrogenase BED35_06365 PF01019 Gamma-glutamyltranspeptidase BED35_06370 PF01848 BED35_06370 BED35_06375 PF00578 AhpC/TSA family BED35_06375 PF10417 C-terminal domain of 1-Cys peroxiredoxin BED35_06380 PF04336 BED35_06380 BED35_06385 PF02547 Queuosine biosynthesis protein BED35_06390 PF12697 Alpha/beta hydrolase family BED35_06395 PF01702 Queuine tRNA-ribosyltransferase BED35_06400 PF02699 Preprotein translocase subunit BED35_06405 PF02355 Protein export membrane protein BED35_06405 PF07549 SecD/SecF GG Motif BED35_06405 PF13721 SecD export protein N-terminal TM region BED35_06410 PF02355 Protein export membrane protein BED35_06410 PF07549 SecD/SecF GG Motif BED35_06425 PF03477 ATP cone domain BED35_06430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED35_06430 PF01872 RibD C-terminal domain BED35_06435 PF00885 6,7-dimethyl-8-ribityllumazine synthase BED35_06440 PF01029 NusB family BED35_06445 PF00586 AIR synthase related protein, N-terminal domain BED35_06445 PF02769 AIR synthase related protein, C-terminal domain BED35_06450 PF04608 Phosphatidylglycerophosphatase A BED35_06455 PF01548 BED35_06455 BED35_06455 PF02371 BED35_06455 BED35_06460 PF02779 Transketolase, pyrimidine binding domain BED35_06460 PF02780 Transketolase, C-terminal domain BED35_06460 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BED35_06465 PF00348 Polyprenyl synthetase BED35_06470 PF02609 Exonuclease VII small subunit BED35_06475 PF02568 Thiamine biosynthesis protein (ThiI) BED35_06475 PF02926 THUMP domain BED35_06480 PF01965 DJ-1/PfpI family BED35_06485 PF02558 Ketopantoate reductase PanE/ApbA BED35_06485 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED35_06490 PF04461 Protein of unknown function (DUF520) BED35_06495 PF07690 Major Facilitator Superfamily BED35_06500 PF01040 UbiA prenyltransferase family BED35_06505 PF03626 BED35_06505 BED35_06510 PF00510 Cytochrome c oxidase subunit III BED35_06515 PF00115 Cytochrome C and Quinol oxidase polypeptide I BED35_06520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BED35_06520 PF06481 COX Aromatic Rich Motif BED35_06525 PF03502 Nucleoside-specific channel-forming protein, Tsx BED35_06530 PF07690 Major Facilitator Superfamily BED35_06535 PF03923 BED35_06535 BED35_06535 PF08139 BED35_06535 BED35_06540 PF01722 BolA-like protein BED35_06550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED35_06550 PF05697 Bacterial trigger factor protein (TF) BED35_06550 PF05698 Bacterial trigger factor protein (TF) C-terminus BED35_06555 PF00574 Clp protease BED35_06560 PF06689 ClpX C4-type zinc finger BED35_06560 PF07724 AAA domain (Cdc48 subfamily) BED35_06560 PF10431 C-terminal, D2-small domain, of ClpB protein BED35_06565 PF00004 ATPase family associated with various cellular activities (AAA) BED35_06565 PF02190 ATP-dependent protease La (LON) domain BED35_06565 PF05362 Lon protease (S16) C-terminal proteolytic domain BED35_06570 PF00216 Bacterial DNA-binding protein BED35_06575 PF13145 PPIC-type PPIASE domain BED35_06575 PF13624 SurA N-terminal domain BED35_06580 PF12836 Helix-hairpin-helix motif BED35_06585 PF13279 Thioesterase-like superfamily BED35_06590 PF06508 Queuosine biosynthesis protein QueC BED35_06595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_06595 PF12793 BED35_06595 BED35_06600 PF08282 haloacid dehalogenase-like hydrolase BED35_06605 PF00291 Pyridoxal-phosphate dependent enzyme BED35_06610 PF01037 AsnC family BED35_06610 PF13412 Winged helix-turn-helix DNA-binding BED35_06615 PF00005 ABC transporter BED35_06615 PF00664 ABC transporter transmembrane region BED35_06620 PF00005 ABC transporter BED35_06620 PF00664 ABC transporter transmembrane region BED35_06625 PF00543 Nitrogen regulatory protein P-II BED35_06630 PF00909 Ammonium Transporter Family BED35_06635 PF13622 Thioesterase-like superfamily BED35_06640 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED35_06645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED35_06655 PF05321 Haemolysin expression modulating protein BED35_06660 PF10757 BED35_06660 BED35_06670 PF00005 ABC transporter BED35_06675 PF00950 BED35_06675 BED35_06680 PF01297 Periplasmic solute binding protein family BED35_06685 PF00444 Ribosomal protein L36 BED35_06690 PF01197 Ribosomal protein L31 BED35_06695 PF10797 BED35_06695 BED35_06700 PF10941 BED35_06700 BED35_06705 PF01676 Metalloenzyme superfamily BED35_06710 PF01168 Alanine racemase, N-terminal domain BED35_06715 PF00874 PRD domain BED35_06720 PF00873 AcrB/AcrD/AcrF family BED35_06725 PF00529 HlyD family secretion protein BED35_06725 PF16576 BED35_06725 BED35_06730 PF00440 Bacterial regulatory proteins, tetR family BED35_06730 PF08361 MAATS-type transcriptional repressor, C-terminal region BED35_06735 PF02635 DsrE/DsrF-like family BED35_06745 PF10689 BED35_06745 BED35_06750 PF07445 Primosomal replication protein priB and priC BED35_06755 PF04304 BED35_06755 BED35_06760 PF00156 Phosphoribosyl transferase domain BED35_06765 PF12168 BED35_06765 BED35_06765 PF12169 DNA polymerase III subunits gamma and tau domain III BED35_06765 PF12170 DNA polymerase III tau subunit V interacting with alpha BED35_06765 PF13177 DNA polymerase III, delta subunit BED35_06770 PF02575 YbaB/EbfC DNA-binding family BED35_06775 PF02132 RecR protein BED35_06775 PF13662 Toprim domain BED35_06780 PF00183 Hsp90 protein BED35_06780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_06785 PF00406 Adenylate kinase BED35_06785 PF05191 Adenylate kinase, active site lid BED35_06790 PF00762 Ferrochelatase BED35_06795 PF01943 BED35_06795 BED35_06800 PF00535 Glycosyl transferase family 2 BED35_06805 PF00535 Glycosyl transferase family 2 BED35_06810 PF00534 Glycosyl transferases group 1 BED35_06810 PF13439 Glycosyltransferase Family 4 BED35_06815 PF00534 Glycosyl transferases group 1 BED35_06820 PF00953 Glycosyl transferase family 4 BED35_06825 PF02719 Polysaccharide biosynthesis protein BED35_06830 PF00534 Glycosyl transferases group 1 BED35_06830 PF13439 Glycosyltransferase Family 4 BED35_06835 PF01370 NAD dependent epimerase/dehydratase family BED35_06840 PF00294 pfkB family carbohydrate kinase BED35_06845 PF00999 Sodium/hydrogen exchanger family BED35_06845 PF02254 TrkA-N domain BED35_06850 PF07690 Major Facilitator Superfamily BED35_06865 PF04073 Aminoacyl-tRNA editing domain BED35_06870 PF01963 BED35_06870 BED35_06875 PF00122 E1-E2 ATPase BED35_06875 PF00403 Heavy-metal-associated domain BED35_06875 PF00702 haloacid dehalogenase-like hydrolase BED35_06880 PF13411 MerR HTH family regulatory protein BED35_06885 PF01957 NfeD-like C-terminal, partner-binding BED35_06890 PF01145 SPFH domain / Band 7 family BED35_06895 PF00085 Thioredoxin BED35_06895 PF14559 Tetratricopeptide repeat BED35_06895 PF14561 Tetratricopeptide repeat BED35_06900 PF00106 short chain dehydrogenase BED35_06905 PF13472 GDSL-like Lipase/Acylhydrolase family BED35_06910 PF00005 ABC transporter BED35_06915 PF02687 BED35_06915 BED35_06920 PF02222 ATP-grasp domain BED35_06925 PF00731 AIR carboxylase BED35_06930 PF00149 Calcineurin-like phosphoesterase BED35_06935 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED35_06940 PF01406 tRNA synthetases class I (C) catalytic domain BED35_06940 PF09190 DALR domain BED35_06945 PF13275 S4 domain BED35_06950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BED35_06950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BED35_06960 PF00589 Phage integrase family BED35_06965 PF05063 BED35_06965 BED35_07005 PF03837 BED35_07005 BED35_07010 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED35_07050 PF00717 Peptidase S24-like BED35_07060 PF05269 Bacteriophage CII protein BED35_07075 PF01695 IstB-like ATP binding protein BED35_07090 PF04448 BED35_07090 BED35_07100 PF05772 NinB protein BED35_07110 PF07102 Protein of unknown function (DUF1364) BED35_07115 PF05866 Endodeoxyribonuclease RusA BED35_07125 PF03589 Antitermination protein BED35_07135 PF16083 BED35_07135 BED35_07140 PF13539 D-alanyl-D-alanine carboxypeptidase BED35_07145 PF10721 BED35_07145 BED35_07160 PF06440 DNA polymerase III, theta subunit BED35_07180 PF05876 BED35_07180 BED35_07185 PF02831 gpW BED35_07190 PF05136 BED35_07190 BED35_07195 PF01343 Peptidase family S49 BED35_07205 PF02924 Bacteriophage lambda head decoration protein D BED35_07210 PF03864 Phage major capsid protein E BED35_07230 PF10948 BED35_07230 BED35_07235 PF04984 Phage tail sheath protein BED35_07235 PF17482 BED35_07235 BED35_07240 PF10618 BED35_07240 BED35_07250 PF01464 Transglycosylase SLT domain BED35_07255 PF07157 BED35_07255 BED35_07260 PF05954 Phage late control gene D protein (GPD) BED35_07265 PF06890 Bacteriophage Mu Gp45 protein BED35_07270 PF07409 BED35_07270 BED35_07275 PF04865 BED35_07275 BED35_07280 PF10076 BED35_07280 BED35_07295 PF01757 BED35_07295 BED35_07300 PF00589 Phage integrase family BED35_07305 PF05063 BED35_07305 BED35_07385 PF10965 BED35_07385 BED35_07390 PF15968 BED35_07390 BED35_07395 PF15969 BED35_07395 BED35_07400 PF00717 Peptidase S24-like BED35_07400 PF01381 Helix-turn-helix BED35_07405 PF15943 BED35_07405 BED35_07410 PF05269 Bacteriophage CII protein BED35_07415 PF02767 DNA polymerase III beta subunit, central domain BED35_07420 PF04492 BED35_07420 BED35_07425 PF00772 DnaB-like helicase N terminal domain BED35_07425 PF03796 DnaB-like helicase C terminal domain BED35_07450 PF15944 BED35_07450 BED35_07455 PF07105 BED35_07455 BED35_07465 PF01844 HNH endonuclease BED35_07470 PF10765 Protein of unknown function (DUF2591) BED35_07475 PF00149 Calcineurin-like phosphoesterase BED35_07485 PF05766 BED35_07485 BED35_07495 PF06530 BED35_07495 BED35_07510 PF16083 BED35_07510 BED35_07515 PF00959 Phage lysozyme BED35_07520 PF03245 BED35_07520 BED35_07525 PF04383 KilA-N domain BED35_07545 PF10045 BED35_07545 BED35_07555 PF13264 BED35_07555 BED35_07565 PF11651 P22 coat protein - gene protein 5 BED35_07610 PF03869 Arc-like DNA binding domain BED35_07615 PF02498 BED35_07615 BED35_07620 PF03374 BED35_07620 BED35_07620 PF04383 KilA-N domain BED35_07660 PF04865 BED35_07660 BED35_07680 PF13356 Domain of unknown function (DUF4102) BED35_07685 PF00589 Phage integrase family BED35_07705 PF02661 Fic/DOC family BED35_07705 PF13784 Fic/DOC family N-terminal BED35_07715 PF05973 BED35_07715 BED35_07720 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED35_07770 PF00072 Response regulator receiver domain BED35_07770 PF00486 Transcriptional regulatory protein, C terminal BED35_07775 PF01738 Dienelactone hydrolase family BED35_07780 PF01548 BED35_07780 BED35_07780 PF02371 BED35_07780 BED35_07790 PF08007 Cupin superfamily protein BED35_07800 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED35_07805 PF00005 ABC transporter BED35_07805 PF00664 ABC transporter transmembrane region BED35_07810 PF03992 Antibiotic biosynthesis monooxygenase BED35_07815 PF08971 Glycogen synthesis protein BED35_07820 PF00149 Calcineurin-like phosphoesterase BED35_07835 PF00313 'Cold-shock' DNA-binding domain BED35_07840 PF00313 'Cold-shock' DNA-binding domain BED35_07845 PF02537 BED35_07845 BED35_07850 PF00990 GGDEF domain BED35_07850 PF05230 BED35_07850 BED35_07855 PF02416 mttA/Hcf106 family BED35_07860 PF04055 Radical SAM superfamily BED35_07860 PF16881 BED35_07860 BED35_07865 PF03099 Biotin/lipoate A/B protein ligase family BED35_07870 PF04359 Protein of unknown function (DUF493) BED35_07875 PF00768 D-alanyl-D-alanine carboxypeptidase BED35_07875 PF07943 Penicillin-binding protein 5, C-terminal domain BED35_07880 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel BED35_07880 PF05036 Sporulation related domain BED35_07885 PF01098 BED35_07885 BED35_07890 PF00905 Penicillin binding protein transpeptidase domain BED35_07890 PF03717 Penicillin-binding Protein dimerisation domain BED35_07895 PF02590 Predicted SPOUT methyltransferase BED35_07900 PF02410 Oligomerisation domain BED35_07905 PF01467 Cytidylyltransferase BED35_07910 PF06144 DNA polymerase III, delta subunit BED35_07910 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BED35_07915 PF04390 Lipopolysaccharide-assembly BED35_07920 PF00133 tRNA synthetases class I (I, L, M and V) BED35_07920 PF08264 Anticodon-binding domain of tRNA BED35_07920 PF13603 Leucyl-tRNA synthetase, Domain 2 BED35_07925 PF07295 BED35_07925 BED35_07930 PF00005 ABC transporter BED35_07935 PF00528 Binding-protein-dependent transport system inner membrane component BED35_07940 PF00528 Binding-protein-dependent transport system inner membrane component BED35_07945 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_07950 PF01243 Pyridoxamine 5'-phosphate oxidase BED35_07955 PF00795 Carbon-nitrogen hydrolase BED35_07960 PF00571 CBS domain BED35_07960 PF03471 Transporter associated domain BED35_07970 PF02562 PhoH-like protein BED35_07975 PF00919 Uncharacterized protein family UPF0004 BED35_07975 PF01938 TRAM domain BED35_07975 PF04055 Radical SAM superfamily BED35_07980 PF01494 FAD binding domain BED35_08015 PF00733 Asparagine synthase BED35_08015 PF13537 Glutamine amidotransferase domain BED35_08020 PF13242 HAD-hyrolase-like BED35_08020 PF13344 Haloacid dehalogenase-like hydrolase BED35_08025 PF00480 ROK family BED35_08025 PF01047 MarR family BED35_08030 PF01979 Amidohydrolase family BED35_08035 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BED35_08045 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED35_08045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BED35_08050 PF03573 outer membrane porin, OprD family BED35_08055 PF13982 BED35_08055 BED35_08060 PF00728 Glycosyl hydrolase family 20, catalytic domain BED35_08060 PF02838 Glycosyl hydrolase family 20, domain 2 BED35_08060 PF03173 Putative carbohydrate binding domain BED35_08060 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BED35_08065 PF01475 Ferric uptake regulator family BED35_08070 PF00258 Flavodoxin BED35_08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_08075 PF02203 Tar ligand binding domain homologue BED35_08080 PF01402 Ribbon-helix-helix protein, copG family BED35_08085 PF12697 Alpha/beta hydrolase family BED35_08090 PF03925 SeqA protein BED35_08090 PF17206 BED35_08090 BED35_08095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED35_08095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED35_08095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED35_08095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED35_08105 PF00892 EamA-like transporter family BED35_08110 PF00072 Response regulator receiver domain BED35_08110 PF00486 Transcriptional regulatory protein, C terminal BED35_08115 PF00512 His Kinase A (phospho-acceptor) domain BED35_08115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_08115 PF02702 Osmosensitive K+ channel His kinase sensor domain BED35_08115 PF13492 GAF domain BED35_08115 PF13493 Domain of unknown function (DUF4118) BED35_08120 PF02669 BED35_08120 BED35_08125 PF00122 E1-E2 ATPase BED35_08125 PF00702 haloacid dehalogenase-like hydrolase BED35_08130 PF03814 BED35_08130 BED35_08135 PF09604 BED35_08135 BED35_08140 PF10725 BED35_08140 BED35_08150 PF02794 BED35_08150 BED35_08160 PF08349 BED35_08160 BED35_08165 PF00875 DNA photolyase BED35_08165 PF03441 FAD binding domain of DNA photolyase BED35_08170 PF02112 BED35_08170 BED35_08175 PF01784 NIF3 (NGG1p interacting factor 3) BED35_08180 PF02682 Allophanate hydrolase subunit 1 BED35_08185 PF02626 Allophanate hydrolase subunit 2 BED35_08190 PF03746 LamB/YcsF family BED35_08195 PF06149 BED35_08195 BED35_08200 PF06166 BED35_08200 BED35_08205 PF01470 Pyroglutamyl peptidase BED35_08210 PF00285 Citrate synthase BED35_08215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED35_08225 PF00890 FAD binding domain BED35_08225 PF02910 Fumarate reductase flavoprotein C-term BED35_08230 PF13085 2Fe-2S iron-sulfur cluster binding domain BED35_08230 PF13534 4Fe-4S dicluster domain BED35_08235 PF00676 Dehydrogenase E1 component BED35_08235 PF02779 Transketolase, pyrimidine binding domain BED35_08235 PF16078 BED35_08235 BED35_08235 PF16870 BED35_08235 BED35_08240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED35_08240 PF00364 Biotin-requiring enzyme BED35_08240 PF02817 e3 binding domain BED35_08245 PF00549 CoA-ligase BED35_08245 PF08442 ATP-grasp domain BED35_08250 PF00549 CoA-ligase BED35_08250 PF02629 CoA binding domain BED35_08255 PF00149 Calcineurin-like phosphoesterase BED35_08255 PF02872 5'-nucleotidase, C-terminal domain BED35_08260 PF01654 BED35_08260 BED35_08265 PF02322 BED35_08265 BED35_08270 PF08173 BED35_08270 BED35_08275 PF09600 BED35_08275 BED35_08280 PF03061 Thioesterase superfamily BED35_08285 PF01618 BED35_08285 BED35_08290 PF02472 Biopolymer transport protein ExbD/TolR BED35_08295 PF06519 TolA C-terminal BED35_08300 PF04052 TolB amino-terminal domain BED35_08300 PF07676 WD40-like Beta Propeller Repeat BED35_08305 PF00691 OmpA family BED35_08310 PF13174 Tetratricopeptide repeat BED35_08310 PF13432 Tetratricopeptide repeat BED35_08310 PF16331 BED35_08310 BED35_08335 PF02445 Quinolinate synthetase A protein BED35_08340 PF04973 BED35_08340 BED35_08345 PF01545 Cation efflux family BED35_08350 PF00793 DAHP synthetase I family BED35_08355 PF00300 Histidine phosphatase superfamily (branch 1) BED35_08360 PF01223 DNA/RNA non-specific endonuclease BED35_08370 PF00082 Subtilase family BED35_08375 PF07769 BED35_08375 BED35_08380 PF01263 Aldose 1-epimerase BED35_08385 PF00288 GHMP kinases N terminal domain BED35_08385 PF08544 GHMP kinases C terminal BED35_08385 PF10509 Galactokinase galactose-binding signature BED35_08390 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BED35_08390 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BED35_08395 PF16363 BED35_08395 BED35_08400 PF02517 CAAX protease self-immunity BED35_08405 PF00005 ABC transporter BED35_08410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_08410 PF03459 TOBE domain BED35_08415 PF10766 Protein of unknown function (DUF2592) BED35_08420 PF13531 Bacterial extracellular solute-binding protein BED35_08425 PF00528 Binding-protein-dependent transport system inner membrane component BED35_08430 PF00005 ABC transporter BED35_08430 PF03459 TOBE domain BED35_08435 PF08282 haloacid dehalogenase-like hydrolase BED35_08440 PF10282 Lactonase, 7-bladed beta-propeller BED35_08445 PF00202 Aminotransferase class-III BED35_08450 PF04055 Radical SAM superfamily BED35_08450 PF06968 Biotin and Thiamin Synthesis associated domain BED35_08455 PF00155 Aminotransferase class I and II BED35_08460 PF08241 Methyltransferase domain BED35_08465 PF13500 AAA domain BED35_08470 PF00005 ABC transporter BED35_08475 PF00271 Helicase conserved C-terminal domain BED35_08475 PF02151 UvrB/uvrC motif BED35_08475 PF04851 Type III restriction enzyme, res subunit BED35_08475 PF12344 Ultra-violet resistance protein B BED35_08480 PF09905 Uncharacterized conserved protein (DUF2132) BED35_08485 PF01933 Uncharacterised protein family UPF0052 BED35_08490 PF04055 Radical SAM superfamily BED35_08490 PF06463 Molybdenum Cofactor Synthesis C BED35_08490 PF13353 4Fe-4S single cluster domain BED35_08495 PF01967 MoaC family BED35_08500 PF02597 ThiS family BED35_08505 PF02391 MoaE protein BED35_08510 PF01027 Inhibitor of apoptosis-promoting Bax1 BED35_08515 PF12698 ABC-2 family transporter protein BED35_08520 PF12698 ABC-2 family transporter protein BED35_08525 PF00005 ABC transporter BED35_08530 PF16576 BED35_08530 BED35_08535 PF00440 Bacterial regulatory proteins, tetR family BED35_08535 PF09209 Domain of unknown function (DUF1956) BED35_08540 PF00270 DEAD/DEAH box helicase BED35_08540 PF00271 Helicase conserved C-terminal domain BED35_08545 PF01207 Dihydrouridine synthase (Dus) BED35_08555 PF00571 CBS domain BED35_08555 PF01769 Divalent cation transporter BED35_08560 PF00768 D-alanyl-D-alanine carboxypeptidase BED35_08565 PF01565 FAD binding domain BED35_08565 PF09330 D-lactate dehydrogenase, membrane binding BED35_08570 PF01928 CYTH domain BED35_08575 PF01844 HNH endonuclease BED35_08580 PF05076 Suppressor of fused protein (SUFU) BED35_08585 PF04226 BED35_08585 BED35_08590 PF00005 ABC transporter BED35_08595 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein BED35_08600 PF00528 Binding-protein-dependent transport system inner membrane component BED35_08605 PF00528 Binding-protein-dependent transport system inner membrane component BED35_08610 PF07308 BED35_08610 BED35_08615 PF13433 Periplasmic binding protein domain BED35_08620 PF02653 BED35_08620 BED35_08620 PF13646 HEAT repeats BED35_08625 PF02653 BED35_08625 BED35_08630 PF00005 ABC transporter BED35_08630 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED35_08635 PF00005 ABC transporter BED35_08640 PF00581 Rhodanese-like domain BED35_08650 PF00487 BED35_08650 BED35_08655 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED35_08665 PF00005 ABC transporter BED35_08670 PF00528 Binding-protein-dependent transport system inner membrane component BED35_08675 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein BED35_08680 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_08685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_08685 PF03466 LysR substrate binding domain BED35_08695 PF00892 EamA-like transporter family BED35_08700 PF05426 Alginate lyase BED35_08705 PF00267 Gram-negative porin BED35_08710 PF06733 DEAD_2 BED35_08710 PF13307 Helicase C-terminal domain BED35_08715 PF00230 Major intrinsic protein BED35_08720 PF02885 Glycosyl transferase family, helical bundle domain BED35_08730 PF07338 Protein of unknown function (DUF1471) BED35_08735 PF01613 Flavin reductase like domain BED35_08740 PF05971 Protein of unknown function (DUF890) BED35_08745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_08745 PF08447 PAS fold BED35_08750 PF00005 ABC transporter BED35_08755 PF00528 Binding-protein-dependent transport system inner membrane component BED35_08760 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_08765 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED35_08770 PF00210 Ferritin-like domain BED35_08775 PF13649 Methyltransferase domain BED35_08780 PF10099 BED35_08780 BED35_08785 PF04542 Sigma-70 region 2 BED35_08785 PF08281 Sigma-70, region 4 BED35_08790 PF02469 Fasciclin domain BED35_08795 PF00583 Acetyltransferase (GNAT) family BED35_08800 PF00892 EamA-like transporter family BED35_08810 PF13505 Outer membrane protein beta-barrel domain BED35_08815 PF12697 Alpha/beta hydrolase family BED35_08820 PF01545 Cation efflux family BED35_08830 PF00005 ABC transporter BED35_08830 PF12848 ABC transporter BED35_08835 PF01548 BED35_08835 BED35_08835 PF02371 BED35_08835 BED35_08840 PF00899 ThiF family BED35_08845 PF00994 Probable molybdopterin binding domain BED35_08845 PF03453 MoeA N-terminal region (domain I and II) BED35_08845 PF03454 MoeA C-terminal region (domain IV) BED35_08850 PF06041 Bacterial protein of unknown function (DUF924) BED35_08855 PF04055 Radical SAM superfamily BED35_08860 PF00005 ABC transporter BED35_08865 PF13437 HlyD family secretion protein BED35_08880 PF00756 Putative esterase BED35_08885 PF00107 Zinc-binding dehydrogenase BED35_08885 PF08240 Alcohol dehydrogenase GroES-like domain BED35_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_08890 PF03466 LysR substrate binding domain BED35_08895 PF06779 BED35_08895 BED35_08900 PF01227 GTP cyclohydrolase I BED35_08905 PF04235 BED35_08905 BED35_08910 PF00356 Bacterial regulatory proteins, lacI family BED35_08910 PF13377 Periplasmic binding protein-like domain BED35_08915 PF13407 Periplasmic binding protein domain BED35_08920 PF00005 ABC transporter BED35_08925 PF02653 BED35_08925 BED35_08930 PF00158 Sigma-54 interaction domain BED35_08930 PF01590 GAF domain BED35_08940 PF00037 4Fe-4S binding domain BED35_08940 PF12800 4Fe-4S binding domain BED35_08945 PF01750 Hydrogenase maturation protease BED35_08950 PF07450 BED35_08950 BED35_08955 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED35_08960 PF12838 4Fe-4S dicluster domain BED35_08965 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED35_08965 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED35_08965 PF00374 Nickel-dependent hydrogenase BED35_08970 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_08970 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED35_08975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED35_08980 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_08980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED35_08985 PF00146 NADH dehydrogenase BED35_08990 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_08995 PF00037 4Fe-4S binding domain BED35_08995 PF12798 4Fe-4S binding domain BED35_09000 PF01155 Hydrogenase expression/synthesis hypA family BED35_09005 PF01455 HupF/HypC family BED35_09010 PF02698 DUF218 domain BED35_09015 PF00390 Malic enzyme, N-terminal domain BED35_09015 PF03949 Malic enzyme, NAD binding domain BED35_09025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED35_09025 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BED35_09030 PF04172 BED35_09030 BED35_09035 PF03788 BED35_09035 BED35_09040 PF07690 Major Facilitator Superfamily BED35_09045 PF08309 BED35_09045 BED35_09050 PF13407 Periplasmic binding protein domain BED35_09060 PF01588 Putative tRNA binding domain BED35_09060 PF09334 tRNA synthetases class I (M) BED35_09065 PF10609 ParA/MinD ATPase like BED35_09070 PF00485 Phosphoribulokinase / Uridine kinase family BED35_09075 PF00692 dUTPase BED35_09080 PF05170 BED35_09080 BED35_09080 PF13502 BED35_09080 BED35_09085 PF03606 BED35_09085 BED35_09090 PF00571 CBS domain BED35_09090 PF03471 Transporter associated domain BED35_09090 PF03741 BED35_09090 BED35_09095 PF05598 BED35_09095 BED35_09095 PF13751 BED35_09095 BED35_09100 PF00483 Nucleotidyl transferase BED35_09105 PF00535 Glycosyl transferase family 2 BED35_09110 PF00535 Glycosyl transferase family 2 BED35_09115 PF01061 BED35_09115 BED35_09120 PF00005 ABC transporter BED35_09125 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BED35_09130 PF04321 RmlD substrate binding domain BED35_09135 PF13692 Glycosyl transferases group 1 BED35_09150 PF00872 BED35_09150 BED35_09175 PF00483 Nucleotidyl transferase BED35_09180 PF00483 Nucleotidyl transferase BED35_09185 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BED35_09185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BED35_09190 PF01502 Phosphoribosyl-AMP cyclohydrolase BED35_09190 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BED35_09195 PF00977 Histidine biosynthesis protein BED35_09200 PF00977 Histidine biosynthesis protein BED35_09205 PF00117 Glutamine amidotransferase class-I BED35_09210 PF00475 Imidazoleglycerol-phosphate dehydratase BED35_09210 PF08645 Polynucleotide kinase 3 phosphatase BED35_09215 PF00155 Aminotransferase class I and II BED35_09220 PF00815 Histidinol dehydrogenase BED35_09225 PF01634 ATP phosphoribosyltransferase BED35_09225 PF08029 HisG, C-terminal domain BED35_09230 PF01370 NAD dependent epimerase/dehydratase family BED35_09235 PF02653 BED35_09235 BED35_09240 PF00005 ABC transporter BED35_09245 PF00465 Iron-containing alcohol dehydrogenase BED35_09255 PF13520 Amino acid permease BED35_09260 PF00929 Exonuclease BED35_09260 PF08411 Exonuclease C-terminal BED35_09265 PF07993 Male sterility protein BED35_09270 PF13515 BED35_09270 BED35_09275 PF04363 BED35_09275 BED35_09280 PF02653 BED35_09280 BED35_09285 PF02653 BED35_09285 BED35_09290 PF00005 ABC transporter BED35_09295 PF13407 Periplasmic binding protein domain BED35_09300 PF00288 GHMP kinases N terminal domain BED35_09305 PF00155 Aminotransferase class I and II BED35_09310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_09315 PF00871 Acetokinase family BED35_09320 PF10662 Ethanolamine utilisation - propanediol utilisation BED35_09325 PF00936 BMC domain BED35_09330 PF00936 BMC domain BED35_09335 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED35_09335 PF10531 SLBB domain BED35_09335 PF13375 RnfC Barrel sandwich hybrid domain BED35_09335 PF13534 4Fe-4S dicluster domain BED35_09340 PF00465 Iron-containing alcohol dehydrogenase BED35_09345 PF00171 Aldehyde dehydrogenase family BED35_09350 PF01923 Cobalamin adenosyltransferase BED35_09350 PF03928 Domain of unknown function (DUF336) BED35_09355 PF03319 Ethanolamine utilisation protein EutN/carboxysome BED35_09360 PF15953 BED35_09360 BED35_09365 PF06130 BED35_09365 BED35_09370 PF00936 BMC domain BED35_09375 PF00936 BMC domain BED35_09380 PF02288 Dehydratase medium subunit BED35_09385 PF08841 Diol dehydratase reactivase ATPase-like domain BED35_09390 PF02287 Dehydratase small subunit BED35_09395 PF02288 Dehydratase medium subunit BED35_09400 PF02286 Dehydratase large subunit BED35_09405 PF00936 BMC domain BED35_09410 PF00936 BMC domain BED35_09415 PF00230 Major intrinsic protein BED35_09420 PF10114 BED35_09420 BED35_09420 PF12833 Helix-turn-helix domain BED35_09425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED35_09425 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED35_09435 PF02570 Precorrin-8X methylmutase BED35_09440 PF01888 CbiD BED35_09445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_09450 PF13847 Methyltransferase domain BED35_09455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_09460 PF01890 Cobalamin synthesis G C-terminus BED35_09460 PF11760 Cobalamin synthesis G N-terminal BED35_09460 PF11761 BED35_09460 BED35_09465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_09470 PF02571 BED35_09470 BED35_09475 PF06180 Cobalt chelatase (CbiK) BED35_09480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED35_09485 PF01891 Cobalt uptake substrate-specific transmembrane region BED35_09490 PF02553 BED35_09490 BED35_09495 PF02361 Cobalt transport protein BED35_09500 PF00005 ABC transporter BED35_09505 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED35_09505 PF13500 AAA domain BED35_09515 PF02654 BED35_09515 BED35_09520 PF00300 Histidine phosphatase superfamily (branch 1) BED35_09525 PF02277 Phosphoribosyltransferase BED35_09540 PF00196 Bacterial regulatory proteins, luxR family BED35_09545 PF08786 Domain of unknown function (DUF1795) BED35_09550 PF00691 OmpA family BED35_09565 PF06744 BED35_09565 BED35_09565 PF06761 BED35_09565 BED35_09565 PF14331 BED35_09565 BED35_09570 PF05954 Phage late control gene D protein (GPD) BED35_09575 PF05488 PAAR motif BED35_09585 PF07024 ImpE protein BED35_09590 PF04965 Gene 25-like lysozyme BED35_09595 PF00764 Arginosuccinate synthase BED35_09600 PF01554 MatE BED35_09615 PF08282 haloacid dehalogenase-like hydrolase BED35_09620 PF00455 BED35_09620 BED35_09620 PF08220 DeoR-like helix-turn-helix domain BED35_09625 PF00144 Beta-lactamase BED35_09630 PF00072 Response regulator receiver domain BED35_09630 PF01584 CheW-like domain BED35_09635 PF00440 Bacterial regulatory proteins, tetR family BED35_09640 PF00155 Aminotransferase class I and II BED35_09640 PF00392 Bacterial regulatory proteins, gntR family BED35_09645 PF00583 Acetyltransferase (GNAT) family BED35_09650 PF02558 Ketopantoate reductase PanE/ApbA BED35_09650 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED35_09660 PF00005 ABC transporter BED35_09660 PF08402 TOBE domain BED35_09665 PF00528 Binding-protein-dependent transport system inner membrane component BED35_09670 PF13343 Bacterial extracellular solute-binding protein BED35_09675 PF07690 Major Facilitator Superfamily BED35_09680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_09680 PF05231 BED35_09680 BED35_09680 PF07730 Histidine kinase BED35_09685 PF00072 Response regulator receiver domain BED35_09685 PF00196 Bacterial regulatory proteins, luxR family BED35_09690 PF00072 Response regulator receiver domain BED35_09690 PF12431 BED35_09690 BED35_09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_09710 PF08218 Citrate lyase ligase C-terminal domain BED35_09715 PF06857 BED35_09715 BED35_09720 PF03328 HpcH/HpaI aldolase/citrate lyase family BED35_09725 PF04223 Citrate lyase, alpha subunit (CitF) BED35_09730 PF03802 BED35_09730 BED35_09735 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED35_09740 PF00939 Sodium:sulfate symporter transmembrane region BED35_09750 PF04290 BED35_09750 BED35_09755 PF03480 Bacterial extracellular solute-binding protein, family 7 BED35_09765 PF01648 4'-phosphopantetheinyl transferase superfamily BED35_09770 PF05118 Aspartyl/Asparaginyl beta-hydroxylase BED35_09775 PF00083 Sugar (and other) transporter BED35_09780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_09785 PF09831 BED35_09785 BED35_09790 PF00849 RNA pseudouridylate synthase BED35_09805 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_09805 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_09810 PF00419 Fimbrial protein BED35_09815 PF00577 Outer membrane usher protein BED35_09815 PF13953 PapC C-terminal domain BED35_09815 PF13954 PapC N-terminal domain BED35_09820 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_09820 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_09825 PF00419 Fimbrial protein BED35_09835 PF00072 Response regulator receiver domain BED35_09835 PF00196 Bacterial regulatory proteins, luxR family BED35_09845 PF06167 Glucose-regulated metallo-peptidase M90 BED35_09855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED35_09855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED35_09860 PF06551 BED35_09860 BED35_09865 PF06551 BED35_09865 BED35_09880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_09885 PF01548 BED35_09885 BED35_09885 PF02371 BED35_09885 BED35_09890 PF00483 Nucleotidyl transferase BED35_09900 PF14001 BED35_09900 BED35_09910 PF01037 AsnC family BED35_09910 PF13412 Winged helix-turn-helix DNA-binding BED35_09915 PF10777 BED35_09915 BED35_09920 PF00107 Zinc-binding dehydrogenase BED35_09920 PF08240 Alcohol dehydrogenase GroES-like domain BED35_09925 PF00872 BED35_09925 BED35_09930 PF00703 Glycosyl hydrolases family 2 BED35_09930 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BED35_09930 PF02837 Glycosyl hydrolases family 2, sugar binding domain BED35_09930 PF02929 Beta galactosidase small chain BED35_09930 PF16353 BED35_09930 BED35_09935 PF00356 Bacterial regulatory proteins, lacI family BED35_09935 PF13377 Periplasmic binding protein-like domain BED35_09940 PF00313 'Cold-shock' DNA-binding domain BED35_09945 PF10781 BED35_09945 BED35_09950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_09950 PF00672 HAMP domain BED35_09950 PF02203 Tar ligand binding domain homologue BED35_09965 PF02308 BED35_09965 BED35_09970 PF00122 E1-E2 ATPase BED35_09970 PF00689 Cation transporting ATPase, C-terminus BED35_09970 PF00690 Cation transporter/ATPase, N-terminus BED35_09970 PF00702 haloacid dehalogenase-like hydrolase BED35_09975 PF00107 Zinc-binding dehydrogenase BED35_09975 PF16884 BED35_09975 BED35_09980 PF00582 Universal stress protein family BED35_09985 PF05247 Flagellar transcriptional activator (FlhD) BED35_09990 PF05280 Flagellar transcriptional activator (FlhC) BED35_09995 PF01618 BED35_09995 BED35_10000 PF00691 OmpA family BED35_10000 PF13677 BED35_10000 BED35_10005 PF01584 CheW-like domain BED35_10005 PF01627 Hpt domain BED35_10005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_10005 PF02895 Signal transducing histidine kinase, homodimeric domain BED35_10005 PF09078 CheY binding BED35_10010 PF01584 CheW-like domain BED35_10015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_10015 PF00672 HAMP domain BED35_10015 PF02203 Tar ligand binding domain homologue BED35_10020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_10020 PF00672 HAMP domain BED35_10020 PF02203 Tar ligand binding domain homologue BED35_10025 PF01739 CheR methyltransferase, SAM binding domain BED35_10025 PF03705 CheR methyltransferase, all-alpha domain BED35_10030 PF00072 Response regulator receiver domain BED35_10030 PF01339 CheB methylesterase BED35_10035 PF00072 Response regulator receiver domain BED35_10040 PF04344 Chemotaxis phosphatase, CheZ BED35_10045 PF00082 Subtilase family BED35_10050 PF01312 FlhB HrpN YscU SpaS Family BED35_10055 PF00771 FHIPEP family BED35_10060 PF06366 BED35_10060 BED35_10070 PF05130 FlgN protein BED35_10075 PF04316 Anti-sigma-28 factor, FlgM BED35_10080 PF13144 SAF-like BED35_10085 PF00460 Flagella basal body rod protein BED35_10090 PF00460 Flagella basal body rod protein BED35_10090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_10095 PF03963 BED35_10095 BED35_10095 PF13860 FlgD Ig-like domain BED35_10095 PF13861 FlgD Tudor-like domain BED35_10100 PF00460 Flagella basal body rod protein BED35_10100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_10100 PF07559 Flagellar basal body protein FlaE BED35_10105 PF00460 Flagella basal body rod protein BED35_10105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_10110 PF00460 Flagella basal body rod protein BED35_10110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_10115 PF02107 BED35_10115 BED35_10120 PF02119 BED35_10120 BED35_10125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BED35_10125 PF10135 BED35_10125 BED35_10130 PF00460 Flagella basal body rod protein BED35_10130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED35_10135 PF00669 Bacterial flagellin N-terminal helical region BED35_10140 PF01311 BED35_10140 BED35_10145 PF01313 BED35_10145 BED35_10150 PF00813 BED35_10150 BED35_10155 PF04347 BED35_10155 BED35_10160 PF01052 Surface presentation of antigens (SPOA) BED35_10160 PF16973 BED35_10160 BED35_10165 PF01052 Surface presentation of antigens (SPOA) BED35_10165 PF02154 Flagellar motor switch protein FliM BED35_10170 PF03748 BED35_10170 BED35_10175 PF02120 Flagellar hook-length control protein FliK BED35_10180 PF02050 Flagellar FliJ protein BED35_10185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_10190 PF02108 BED35_10190 BED35_10195 PF01706 FliG C-terminal domain BED35_10195 PF14841 FliG middle domain BED35_10195 PF14842 FliG N-terminal domain BED35_10200 PF01514 Secretory protein of YscJ/FliF family BED35_10200 PF08345 BED35_10200 BED35_10205 PF02049 BED35_10205 BED35_10230 PF00730 HhH-GPD superfamily base excision DNA repair protein BED35_10235 PF13487 HD domain BED35_10240 PF12833 Helix-turn-helix domain BED35_10245 PF05400 Flagellar protein FliT BED35_10250 PF02561 Flagellar protein FliS BED35_10255 PF02465 BED35_10255 BED35_10255 PF07195 BED35_10255 BED35_10255 PF07196 Flagellin hook IN motif BED35_10260 PF00669 Bacterial flagellin N-terminal helical region BED35_10260 PF00700 Bacterial flagellin C-terminal helical region BED35_10265 PF00669 Bacterial flagellin N-terminal helical region BED35_10265 PF00700 Bacterial flagellin C-terminal helical region BED35_10275 PF04539 Sigma-70 region 3 BED35_10275 PF04542 Sigma-70 region 2 BED35_10275 PF04545 Sigma-70, region 4 BED35_10280 PF02899 Phage integrase, N-terminal SAM-like domain BED35_10285 PF00291 Pyridoxal-phosphate dependent enzyme BED35_10290 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_10300 PF00005 ABC transporter BED35_10315 PF00171 Aldehyde dehydrogenase family BED35_10315 PF01619 Proline dehydrogenase BED35_10315 PF14850 DNA-binding domain of Proline dehydrogenase BED35_10320 PF00474 Sodium:solute symporter family BED35_10340 PF03239 BED35_10340 BED35_10345 PF09375 Imelysin BED35_10345 PF13473 Cupredoxin-like domain BED35_10350 PF04261 Dyp-type peroxidase family BED35_10355 PF03358 NADPH-dependent FMN reductase BED35_10360 PF01381 Helix-turn-helix BED35_10360 PF13239 BED35_10360 BED35_10365 PF01344 Kelch motif BED35_10380 PF01613 Flavin reductase like domain BED35_10385 PF00881 Nitroreductase family BED35_10390 PF00561 alpha/beta hydrolase fold BED35_10400 PF00857 Isochorismatase family BED35_10410 PF00440 Bacterial regulatory proteins, tetR family BED35_10410 PF08362 YcdC-like protein, C-terminal region BED35_10415 PF00324 Amino acid permease BED35_10425 PF00589 Phage integrase family BED35_10430 PF01527 Transposase BED35_10435 PF13683 BED35_10435 BED35_10455 PF00128 Alpha amylase, catalytic domain BED35_10465 PF01066 CDP-alcohol phosphatidyltransferase BED35_10485 PF04606 BED35_10485 BED35_10500 PF05954 Phage late control gene D protein (GPD) BED35_10520 PF05069 BED35_10520 BED35_10525 PF06891 BED35_10525 BED35_10535 PF13539 D-alanyl-D-alanine carboxypeptidase BED35_10555 PF05598 BED35_10555 BED35_10555 PF13751 BED35_10555 BED35_10565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_10565 PF03466 LysR substrate binding domain BED35_10570 PF01381 Helix-turn-helix BED35_10575 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_10585 PF06530 BED35_10585 BED35_10590 PF10753 BED35_10590 BED35_10595 PF16080 BED35_10595 BED35_10600 PF00959 Phage lysozyme BED35_10605 PF00561 alpha/beta hydrolase fold BED35_10610 PF04391 BED35_10610 BED35_10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_10615 PF03466 LysR substrate binding domain BED35_10620 PF00144 Beta-lactamase BED35_10625 PF01926 50S ribosome-binding GTPase BED35_10625 PF06071 Protein of unknown function (DUF933) BED35_10635 PF01195 Peptidyl-tRNA hydrolase BED35_10640 PF10762 BED35_10640 BED35_10650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BED35_10650 PF14572 Phosphoribosyl synthetase-associated domain BED35_10655 PF00288 GHMP kinases N terminal domain BED35_10655 PF08544 GHMP kinases C terminal BED35_10660 PF03550 Outer membrane lipoprotein LolB BED35_10665 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BED35_10665 PF01488 Shikimate / quinate 5-dehydrogenase BED35_10665 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BED35_10670 PF00472 RF-1 domain BED35_10670 PF03462 PCRF domain BED35_10675 PF13847 Methyltransferase domain BED35_10680 PF04247 BED35_10680 BED35_10685 PF13369 BED35_10685 BED35_10685 PF13371 Tetratricopeptide repeat BED35_10690 PF00793 DAHP synthetase I family BED35_10695 PF00916 BED35_10695 BED35_10695 PF01740 STAS domain BED35_10700 PF00990 GGDEF domain BED35_10725 PF02811 PHP domain BED35_10730 PF02613 Nitrate reductase delta subunit BED35_10735 PF07273 Protein of unknown function (DUF1439) BED35_10740 PF07690 Major Facilitator Superfamily BED35_10750 PF13988 BED35_10750 BED35_10755 PF13302 Acetyltransferase (GNAT) domain BED35_10760 PF04337 Protein of unknown function, DUF480 BED35_10765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED35_10770 PF03023 BED35_10770 BED35_10775 PF01699 Sodium/calcium exchanger protein BED35_10780 PF04954 Siderophore-interacting protein BED35_10780 PF08021 Siderophore-interacting FAD-binding domain BED35_10785 PF07690 Major Facilitator Superfamily BED35_10790 PF01548 BED35_10790 BED35_10790 PF02371 BED35_10790 BED35_10800 PF00672 HAMP domain BED35_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_10800 PF07730 Histidine kinase BED35_10800 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BED35_10805 PF02322 BED35_10805 BED35_10810 PF01654 BED35_10810 BED35_10815 PF00155 Aminotransferase class I and II BED35_10815 PF00392 Bacterial regulatory proteins, gntR family BED35_10820 PF00202 Aminotransferase class-III BED35_10825 PF04958 Arginine N-succinyltransferase beta subunit BED35_10830 PF00171 Aldehyde dehydrogenase family BED35_10835 PF04996 Succinylarginine dihydrolase BED35_10840 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BED35_10845 PF01548 BED35_10845 BED35_10845 PF02371 BED35_10845 BED35_10850 PF00267 Gram-negative porin BED35_10855 PF00665 Integrase core domain BED35_10860 PF13518 Helix-turn-helix domain BED35_10865 PF05013 N-formylglutamate amidohydrolase BED35_10870 PF01979 Amidohydrolase family BED35_10875 PF00392 Bacterial regulatory proteins, gntR family BED35_10875 PF07702 UTRA domain BED35_10880 PF01979 Amidohydrolase family BED35_10900 PF03797 Autotransporter beta-domain BED35_10905 PF02502 Ribose/Galactose Isomerase BED35_10905 PF12408 Ribose-5-phosphate isomerase BED35_10910 PF01476 LysM domain BED35_10910 PF01551 Peptidase family M23 BED35_10915 PF01116 Fructose-bisphosphate aldolase class-II BED35_10920 PF01380 SIS domain BED35_10925 PF03610 PTS system fructose IIA component BED35_10930 PF03613 BED35_10930 BED35_10940 PF03830 PTS system sorbose subfamily IIB component BED35_10945 PF08013 Tagatose 6 phosphate kinase BED35_10950 PF00455 BED35_10950 BED35_10950 PF08220 DeoR-like helix-turn-helix domain BED35_10960 PF01548 BED35_10960 BED35_10960 PF02371 BED35_10960 BED35_10965 PF06551 BED35_10965 BED35_10970 PF00849 RNA pseudouridylate synthase BED35_10970 PF01479 S4 domain BED35_10975 PF03616 BED35_10975 BED35_10985 PF01548 BED35_10985 BED35_10990 PF02371 BED35_10990 BED35_10995 PF08003 Protein of unknown function (DUF1698) BED35_11000 PF13649 Methyltransferase domain BED35_11005 PF01124 MAPEG family BED35_11010 PF01904 Protein of unknown function DUF72 BED35_11015 PF00857 Isochorismatase family BED35_11020 PF00152 tRNA synthetases class II (D, K and N) BED35_11020 PF01336 OB-fold nucleic acid binding domain BED35_11020 PF02938 GAD domain BED35_11025 PF00293 NUDIX domain BED35_11030 PF01709 Transcriptional regulator BED35_11035 PF02075 Crossover junction endodeoxyribonuclease RuvC BED35_11040 PF01330 RuvA N terminal domain BED35_11040 PF07499 RuvA, C-terminal domain BED35_11040 PF14520 Helix-hairpin-helix domain BED35_11045 PF05491 Holliday junction DNA helicase ruvB C-terminus BED35_11045 PF05496 Holliday junction DNA helicase ruvB N-terminus BED35_11050 PF00854 POT family BED35_11055 PF00950 BED35_11055 BED35_11060 PF00005 ABC transporter BED35_11065 PF01297 Periplasmic solute binding protein family BED35_11070 PF01551 Peptidase family M23 BED35_11070 PF04225 Opacity-associated protein A LysM-like domain BED35_11070 PF08525 BED35_11070 BED35_11075 PF03279 BED35_11075 BED35_11090 PF00224 Pyruvate kinase, barrel domain BED35_11090 PF02887 Pyruvate kinase, alpha/beta domain BED35_11095 PF01380 SIS domain BED35_11095 PF01418 Helix-turn-helix domain, rpiR family BED35_11100 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BED35_11100 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BED35_11105 PF01081 KDPG and KHG aldolase BED35_11110 PF00893 Small Multidrug Resistance protein BED35_11115 PF00893 Small Multidrug Resistance protein BED35_11120 PF01042 Endoribonuclease L-PSP BED35_11125 PF06733 DEAD_2 BED35_11125 PF13307 Helicase C-terminal domain BED35_11130 PF00814 Glycoprotease family BED35_11140 PF00501 AMP-binding enzyme BED35_11140 PF13193 AMP-binding enzyme C-terminal domain BED35_11145 PF00570 HRDC domain BED35_11145 PF01612 3'-5' exonuclease BED35_11150 PF03776 Septum formation topological specificity factor MinE BED35_11155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED35_11160 PF03775 Septum formation inhibitor MinC, C-terminal domain BED35_11160 PF05209 Septum formation inhibitor MinC, N-terminal domain BED35_11170 PF05166 YcgL domain BED35_11175 PF13406 Transglycosylase SLT domain BED35_11180 PF01557 Fumarylacetoacetate (FAA) hydrolase family BED35_11185 PF03692 BED35_11185 BED35_11200 PF00892 EamA-like transporter family BED35_11210 PF00924 Mechanosensitive ion channel BED35_11215 PF13417 Glutathione S-transferase, N-terminal domain BED35_11215 PF14834 Glutathione S-transferase, C-terminal domain BED35_11220 PF13302 Acetyltransferase (GNAT) domain BED35_11230 PF04266 ASCH domain BED35_11235 PF07351 BED35_11235 BED35_11245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_11250 PF05229 BED35_11250 BED35_11255 PF05229 BED35_11255 BED35_11265 PF07690 Major Facilitator Superfamily BED35_11270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_11270 PF03466 LysR substrate binding domain BED35_11275 PF02470 BED35_11275 BED35_11280 PF04403 BED35_11280 BED35_11285 PF13185 GAF domain BED35_11290 PF04352 ProQ/FINO family BED35_11290 PF17516 BED35_11290 BED35_11295 PF00595 PDZ domain (Also known as DHR or GLGF) BED35_11295 PF03572 Peptidase family S41 BED35_11295 PF11818 BED35_11295 BED35_11300 PF01435 Peptidase family M48 BED35_11315 PF14583 Oligogalacturonate lyase BED35_11320 PF01614 Bacterial transcriptional regulator BED35_11320 PF09339 IclR helix-turn-helix domain BED35_11325 PF01471 Putative peptidoglycan binding domain BED35_11325 PF01510 N-acetylmuramoyl-L-alanine amidase BED35_11335 PF04307 BED35_11335 BED35_11345 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED35_11350 PF13416 Bacterial extracellular solute-binding protein BED35_11355 PF00005 ABC transporter BED35_11355 PF08402 TOBE domain BED35_11360 PF00528 Binding-protein-dependent transport system inner membrane component BED35_11365 PF00528 Binding-protein-dependent transport system inner membrane component BED35_11370 PF06917 Periplasmic pectate lyase BED35_11375 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_11380 PF04962 KduI/IolB family BED35_11385 PF07883 Cupin domain BED35_11390 PF00872 BED35_11390 BED35_11395 PF13419 Haloacid dehalogenase-like hydrolase BED35_11400 PF14002 BED35_11400 BED35_11405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_11405 PF03466 LysR substrate binding domain BED35_11410 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BED35_11410 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BED35_11415 PF00378 Enoyl-CoA hydratase/isomerase family BED35_11420 PF03308 ArgK protein BED35_11430 PF03881 Fructosamine kinase BED35_11435 PF00950 BED35_11435 BED35_11440 PF00950 BED35_11440 BED35_11445 PF00005 ABC transporter BED35_11450 PF01297 Periplasmic solute binding protein family BED35_11455 PF01464 Transglycosylase SLT domain BED35_11460 PF01914 BED35_11460 BED35_11485 PF04474 BED35_11485 BED35_11490 PF13619 BED35_11490 BED35_11495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED35_11495 PF02824 TGS domain BED35_11495 PF03129 Anticodon binding domain BED35_11495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED35_11500 PF00707 Translation initiation factor IF-3, C-terminal domain BED35_11505 PF01632 Ribosomal protein L35 BED35_11510 PF00453 Ribosomal protein L20 BED35_11515 PF01409 tRNA synthetases class II core domain (F) BED35_11515 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BED35_11520 PF01588 Putative tRNA binding domain BED35_11520 PF03147 Ferredoxin-fold anticodon binding domain BED35_11520 PF03483 B3/4 domain BED35_11520 PF03484 tRNA synthetase B5 domain BED35_11525 PF00216 Bacterial DNA-binding protein BED35_11530 PF13358 DDE superfamily endonuclease BED35_11530 PF13384 Homeodomain-like domain BED35_11535 PF10697 BED35_11535 BED35_11540 PF01032 FecCD transport family BED35_11545 PF00255 Glutathione peroxidase BED35_11550 PF00005 ABC transporter BED35_11555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED35_11560 PF00535 Glycosyl transferase family 2 BED35_11565 PF00551 Formyl transferase BED35_11565 PF01370 NAD dependent epimerase/dehydratase family BED35_11565 PF02911 Formyl transferase, C-terminal domain BED35_11570 PF01522 Polysaccharide deacetylase BED35_11575 PF02366 BED35_11575 BED35_11580 PF00892 EamA-like transporter family BED35_11590 PF00877 NlpC/P60 family BED35_11600 PF02696 BED35_11600 BED35_11615 PF00593 TonB dependent receptor BED35_11615 PF07715 TonB-dependent Receptor Plug Domain BED35_11620 PF10636 Hemin uptake protein hemP BED35_11625 PF00793 DAHP synthetase I family BED35_11630 PF03618 BED35_11630 BED35_11635 PF00391 PEP-utilising enzyme, mobile domain BED35_11635 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BED35_11635 PF02896 PEP-utilising enzyme, TIM barrel domain BED35_11645 PF01594 BED35_11645 BED35_11650 PF01565 FAD binding domain BED35_11650 PF02913 FAD linked oxidases, C-terminal domain BED35_11650 PF13183 4Fe-4S dicluster domain BED35_11655 PF03061 Thioesterase superfamily BED35_11660 PF01521 Iron-sulphur cluster biosynthesis BED35_11665 PF01458 Uncharacterized protein family (UPF0051) BED35_11670 PF00005 ABC transporter BED35_11675 PF01458 Uncharacterized protein family (UPF0051) BED35_11680 PF00266 Aminotransferase class-V BED35_11685 PF02657 Fe-S metabolism associated domain BED35_11690 PF03734 L,D-transpeptidase catalytic domain BED35_11695 PF04728 Lipoprotein leucine-zipper BED35_11700 PF00224 Pyruvate kinase, barrel domain BED35_11700 PF02887 Pyruvate kinase, alpha/beta domain BED35_11720 PF00677 Lumazine binding domain BED35_11725 PF02353 Mycolic acid cyclopropane synthetase BED35_11730 PF07690 Major Facilitator Superfamily BED35_11735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_11735 PF03466 LysR substrate binding domain BED35_11740 PF00356 Bacterial regulatory proteins, lacI family BED35_11740 PF13377 Periplasmic binding protein-like domain BED35_11745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED35_11745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED35_11750 PF00877 NlpC/P60 family BED35_11755 PF00462 Glutaredoxin BED35_11760 PF00929 Exonuclease BED35_11765 PF05598 BED35_11765 BED35_11765 PF13751 BED35_11765 BED35_11770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED35_11780 PF00440 Bacterial regulatory proteins, tetR family BED35_11780 PF16925 BED35_11780 BED35_11785 PF00884 Sulfatase BED35_11785 PF08019 BED35_11785 BED35_11790 PF06945 BED35_11790 BED35_11795 PF00248 Aldo/keto reductase family BED35_11800 PF04632 BED35_11800 BED35_11810 PF07869 BED35_11810 BED35_11815 PF01047 MarR family BED35_11820 PF05433 BED35_11820 BED35_11825 PF03702 Uncharacterised protein family (UPF0075) BED35_11830 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BED35_11835 PF01243 Pyridoxamine 5'-phosphate oxidase BED35_11835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BED35_11840 PF00579 tRNA synthetases class I (W and Y) BED35_11840 PF01479 S4 domain BED35_11850 PF00043 Glutathione S-transferase, C-terminal domain BED35_11850 PF02798 Glutathione S-transferase, N-terminal domain BED35_11855 PF11656 BED35_11855 BED35_11860 PF06930 BED35_11860 BED35_11865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED35_11870 PF01548 BED35_11870 BED35_11870 PF02371 BED35_11870 BED35_11875 PF00854 POT family BED35_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_11880 PF03466 LysR substrate binding domain BED35_11895 PF00005 ABC transporter BED35_11900 PF00005 ABC transporter BED35_11900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_11905 PF00528 Binding-protein-dependent transport system inner membrane component BED35_11905 PF12911 BED35_11905 BED35_11910 PF00528 Binding-protein-dependent transport system inner membrane component BED35_11915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_11930 PF00158 Sigma-54 interaction domain BED35_11930 PF02954 Bacterial regulatory protein, Fis family BED35_11935 PF04012 BED35_11935 BED35_11940 PF06667 BED35_11940 BED35_11945 PF04024 BED35_11945 BED35_11950 PF09584 BED35_11950 BED35_11955 PF04317 BED35_11955 BED35_11960 PF05128 BED35_11960 BED35_11965 PF08808 BED35_11965 BED35_11970 PF09722 BED35_11970 BED35_11975 PF00158 Sigma-54 interaction domain BED35_11975 PF00989 PAS fold BED35_11980 PF08534 Redoxin BED35_11985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BED35_11985 PF13378 Enolase C-terminal domain-like BED35_11990 PF00246 Zinc carboxypeptidase BED35_11995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_12000 PF01544 CorA-like Mg2+ transporter protein BED35_12005 PF01171 PP-loop family BED35_12010 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BED35_12020 PF00893 Small Multidrug Resistance protein BED35_12025 PF02308 BED35_12025 BED35_12030 PF03891 BED35_12030 BED35_12035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED35_12035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED35_12040 PF11739 BED35_12040 BED35_12045 PF13617 BED35_12045 BED35_12050 PF07027 BED35_12050 BED35_12055 PF02525 Flavodoxin-like fold BED35_12060 PF00270 DEAD/DEAH box helicase BED35_12060 PF00271 Helicase conserved C-terminal domain BED35_12060 PF04408 Helicase associated domain (HA2) BED35_12060 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BED35_12060 PF11898 BED35_12060 BED35_12065 PF05973 BED35_12065 BED35_12070 PF01381 Helix-turn-helix BED35_12075 PF00089 Trypsin BED35_12085 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BED35_12090 PF00672 HAMP domain BED35_12090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_12095 PF00072 Response regulator receiver domain BED35_12095 PF00486 Transcriptional regulatory protein, C terminal BED35_12105 PF13520 Amino acid permease BED35_12110 PF07338 Protein of unknown function (DUF1471) BED35_12120 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BED35_12120 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BED35_12120 PF12769 Domain of unknown function (DUF3814) BED35_12125 PF02233 NAD(P) transhydrogenase beta subunit BED35_12130 PF00582 Universal stress protein family BED35_12135 PF00027 Cyclic nucleotide-binding domain BED35_12135 PF13545 Crp-like helix-turn-helix domain BED35_12140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED35_12140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED35_12145 PF05013 N-formylglutamate amidohydrolase BED35_12150 PF04463 BED35_12150 BED35_12155 PF06445 GyrI-like small molecule binding domain BED35_12160 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_12180 PF13208 BED35_12180 BED35_12180 PF15615 BED35_12180 BED35_12185 PF13419 Haloacid dehalogenase-like hydrolase BED35_12190 PF13710 ACT domain BED35_12195 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_12195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_12195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_12200 PF07313 Protein of unknown function (DUF1460) BED35_12205 PF01510 N-acetylmuramoyl-L-alanine amidase BED35_12215 PF07520 BED35_12215 BED35_12235 PF13449 Esterase-like activity of phytase BED35_12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_12250 PF07690 Major Facilitator Superfamily BED35_12255 PF13396 BED35_12255 BED35_12260 PF13354 Beta-lactamase enzyme family BED35_12265 PF05472 DNA replication terminus site-binding protein (Ter protein) BED35_12270 PF00196 Bacterial regulatory proteins, luxR family BED35_12270 PF08448 PAS fold BED35_12275 PF00206 Lyase BED35_12275 PF10415 Fumarase C C-terminus BED35_12280 PF01238 Phosphomannose isomerase type I BED35_12285 PF06097 BED35_12285 BED35_12295 PF00356 Bacterial regulatory proteins, lacI family BED35_12295 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_12300 PF00367 phosphotransferase system, EIIB BED35_12300 PF02378 Phosphotransferase system, EIIC BED35_12305 PF00155 Aminotransferase class I and II BED35_12310 PF00962 Adenosine/AMP deaminase BED35_12315 PF13593 SBF-like CPA transporter family (DUF4137) BED35_12320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED35_12320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED35_12325 PF02311 AraC-like ligand binding domain BED35_12325 PF12833 Helix-turn-helix domain BED35_12335 PF00005 ABC transporter BED35_12340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_12345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED35_12345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED35_12350 PF02610 L-arabinose isomerase BED35_12350 PF11762 L-arabinose isomerase C-terminal domain BED35_12360 PF13175 AAA ATPase domain BED35_12360 PF13304 AAA domain BED35_12370 PF13437 HlyD family secretion protein BED35_12370 PF13533 Biotin-lipoyl like BED35_12385 PF10754 BED35_12385 BED35_12390 PF02508 BED35_12390 BED35_12395 PF04060 Putative Fe-S cluster BED35_12395 PF14697 4Fe-4S dicluster domain BED35_12400 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED35_12400 PF10531 SLBB domain BED35_12400 PF13237 4Fe-4S dicluster domain BED35_12400 PF13375 RnfC Barrel sandwich hybrid domain BED35_12410 PF06445 GyrI-like small molecule binding domain BED35_12410 PF12833 Helix-turn-helix domain BED35_12415 PF03116 BED35_12415 BED35_12420 PF04205 FMN-binding domain BED35_12425 PF02508 BED35_12425 BED35_12430 PF00633 Helix-hairpin-helix motif BED35_12430 PF00730 HhH-GPD superfamily base excision DNA repair protein BED35_12430 PF10576 Iron-sulfur binding domain of endonuclease III BED35_12505 PF00293 NUDIX domain BED35_12505 PF09979 BED35_12505 BED35_12515 PF06381 BED35_12515 BED35_12520 PF03237 Terminase-like family BED35_12530 PF03245 BED35_12530 BED35_12535 PF00959 Phage lysozyme BED35_12560 PF05766 BED35_12560 BED35_12570 PF05772 NinB protein BED35_12580 PF04448 BED35_12580 BED35_12595 PF01695 IstB-like ATP binding protein BED35_12600 PF04492 BED35_12600 BED35_12610 PF05269 Bacteriophage CII protein BED35_12615 PF13560 Helix-turn-helix domain BED35_12620 PF00717 Peptidase S24-like BED35_12620 PF01381 Helix-turn-helix BED35_12630 PF08861 BED35_12630 BED35_12635 PF10965 BED35_12635 BED35_12675 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED35_12680 PF03837 BED35_12680 BED35_12695 PF00575 S1 RNA binding domain BED35_12695 PF00773 RNB domain BED35_12695 PF08206 Ribonuclease B OB domain BED35_12700 PF02554 BED35_12700 BED35_12700 PF13722 BED35_12700 BED35_12705 PF04328 BED35_12705 BED35_12710 PF00923 Transaldolase BED35_12715 PF00455 BED35_12715 BED35_12715 PF08220 DeoR-like helix-turn-helix domain BED35_12720 PF09932 BED35_12720 BED35_12725 PF00596 Class II Aldolase and Adducin N-terminal domain BED35_12730 PF05433 BED35_12730 BED35_12735 PF01253 Translation initiation factor SUI1 BED35_12740 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BED35_12745 PF07338 Protein of unknown function (DUF1471) BED35_12750 PF03594 BED35_12750 BED35_12755 PF01381 Helix-turn-helix BED35_12755 PF07883 Cupin domain BED35_12765 PF13176 Tetratricopeptide repeat BED35_12765 PF13432 Tetratricopeptide repeat BED35_12770 PF06305 BED35_12770 BED35_12775 PF01569 PAP2 superfamily BED35_12780 PF00925 GTP cyclohydrolase II BED35_12785 PF00330 Aconitase family (aconitate hydratase) BED35_12785 PF00694 Aconitase C-terminal domain BED35_12795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_12795 PF03466 LysR substrate binding domain BED35_12800 PF01131 DNA topoisomerase BED35_12800 PF01396 BED35_12800 BED35_12800 PF01751 Toprim domain BED35_12800 PF08272 Topoisomerase I zinc-ribbon-like BED35_12805 PF10692 Protein of unknown function (DUF2498) BED35_12810 PF01343 Peptidase family S49 BED35_12810 PF08496 BED35_12810 BED35_12815 PF00106 short chain dehydrogenase BED35_12820 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BED35_12820 PF12557 Cob(I)alamin adenosyltransferase N terminal BED35_12830 PF00849 RNA pseudouridylate synthase BED35_12830 PF01479 S4 domain BED35_12835 PF01300 Telomere recombination BED35_12840 PF02811 PHP domain BED35_12845 PF00425 chorismate binding enzyme BED35_12845 PF04715 Anthranilate synthase component I, N terminal region BED35_12850 PF00117 Glutamine amidotransferase class-I BED35_12855 PF00591 Glycosyl transferase family, a/b domain BED35_12855 PF02885 Glycosyl transferase family, helical bundle domain BED35_12860 PF00218 Indole-3-glycerol phosphate synthase BED35_12860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BED35_12865 PF00291 Pyridoxal-phosphate dependent enzyme BED35_12870 PF00290 Tryptophan synthase alpha chain BED35_12875 PF04972 BON domain BED35_12880 PF03922 OmpW family BED35_12885 PF03692 BED35_12885 BED35_12890 PF06790 BED35_12890 BED35_12895 PF00916 BED35_12895 BED35_12895 PF01740 STAS domain BED35_12900 PF04279 BED35_12900 BED35_12905 PF03061 Thioesterase superfamily BED35_12910 PF03544 Gram-negative bacterial TonB protein C-terminal BED35_12910 PF16031 BED35_12910 BED35_12915 PF03795 YCII-related domain BED35_12925 PF00563 EAL domain BED35_12930 PF13091 PLD-like domain BED35_12930 PF13396 BED35_12930 BED35_12935 PF04269 Protein of unknown function, DUF440 BED35_12940 PF00005 ABC transporter BED35_12940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_12945 PF00005 ABC transporter BED35_12945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_12950 PF00528 Binding-protein-dependent transport system inner membrane component BED35_12950 PF12911 BED35_12950 BED35_12955 PF00528 Binding-protein-dependent transport system inner membrane component BED35_12960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_12965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_12970 PF01914 BED35_12970 BED35_12975 PF00171 Aldehyde dehydrogenase family BED35_12975 PF00465 Iron-containing alcohol dehydrogenase BED35_12980 PF00265 Thymidine kinase BED35_12990 PF00816 H-NS histone family BED35_12995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED35_12995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED35_12995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED35_13000 PF00072 Response regulator receiver domain BED35_13005 PF01734 Patatin-like phospholipase BED35_13015 PF02810 SEC-C motif BED35_13020 PF00551 Formyl transferase BED35_13020 PF01842 ACT domain BED35_13035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_13040 PF03372 Endonuclease/Exonuclease/phosphatase family BED35_13045 PF00293 NUDIX domain BED35_13050 PF07383 BED35_13050 BED35_13055 PF01131 DNA topoisomerase BED35_13055 PF01751 Toprim domain BED35_13060 PF00586 AIR synthase related protein, N-terminal domain BED35_13060 PF02769 AIR synthase related protein, C-terminal domain BED35_13065 PF00881 Nitroreductase family BED35_13070 PF01343 Peptidase family S49 BED35_13075 PF00710 Asparaginase BED35_13080 PF00857 Isochorismatase family BED35_13095 PF01641 SelR domain BED35_13100 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED35_13100 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED35_13105 PF01263 Aldose 1-epimerase BED35_13110 PF06629 BED35_13110 BED35_13115 PF06798 BED35_13115 BED35_13115 PF08298 PrkA AAA domain BED35_13120 PF04285 BED35_13120 BED35_13125 PF00892 EamA-like transporter family BED35_13135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_13135 PF03466 LysR substrate binding domain BED35_13140 PF02678 Pirin BED35_13140 PF05726 Pirin C-terminal cupin domain BED35_13145 PF00563 EAL domain BED35_13145 PF00990 GGDEF domain BED35_13145 PF08447 PAS fold BED35_13145 PF13185 GAF domain BED35_13145 PF13426 PAS domain BED35_13155 PF00842 Alanine racemase, C-terminal domain BED35_13155 PF01168 Alanine racemase, N-terminal domain BED35_13160 PF01266 FAD dependent oxidoreductase BED35_13165 PF04293 BED35_13165 BED35_13170 PF00392 Bacterial regulatory proteins, gntR family BED35_13170 PF07840 FadR C-terminal domain BED35_13175 PF06450 BED35_13175 BED35_13180 PF02600 Disulfide bond formation protein DsbB BED35_13200 PF03932 CutC family BED35_13205 PF06185 YecM protein BED35_13210 PF00750 tRNA synthetases class I (R) BED35_13210 PF03485 Arginyl tRNA synthetase N terminal domain BED35_13210 PF05746 DALR anticodon binding domain BED35_13215 PF05598 BED35_13215 BED35_13215 PF13751 BED35_13215 BED35_13220 PF02562 PhoH-like protein BED35_13230 PF13302 Acetyltransferase (GNAT) domain BED35_13235 PF13994 BED35_13235 BED35_13240 PF00535 Glycosyl transferase family 2 BED35_13255 PF00557 Metallopeptidase family M24 BED35_13255 PF01321 Creatinase/Prolidase N-terminal domain BED35_13265 PF01411 tRNA synthetases class II (A) BED35_13265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED35_13275 PF03848 Tellurite resistance protein TehB BED35_13275 PF09313 Domain of unknown function (DUF1971) BED35_13280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED35_13285 PF08534 Redoxin BED35_13290 PF00005 ABC transporter BED35_13300 PF02687 BED35_13300 BED35_13305 PF04945 YHS domain BED35_13305 PF10080 BED35_13305 BED35_13310 PF10634 Fe2+ transport protein BED35_13315 PF03239 BED35_13315 BED35_13330 PF04960 Glutaminase BED35_13335 PF01261 Xylose isomerase-like TIM barrel BED35_13340 PF00596 Class II Aldolase and Adducin N-terminal domain BED35_13345 PF07005 Protein of unknown function, DUF1537 BED35_13345 PF17042 BED35_13345 BED35_13350 PF00455 BED35_13350 BED35_13350 PF08220 DeoR-like helix-turn-helix domain BED35_13355 PF00989 PAS fold BED35_13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_13355 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED35_13355 PF17203 BED35_13355 BED35_13360 PF00072 Response regulator receiver domain BED35_13365 PF03390 BED35_13365 BED35_13370 PF00324 Amino acid permease BED35_13375 PF04343 BED35_13375 BED35_13380 PF00480 ROK family BED35_13385 PF07690 Major Facilitator Superfamily BED35_13390 PF08282 haloacid dehalogenase-like hydrolase BED35_13400 PF00872 BED35_13400 BED35_13405 PF08242 Methyltransferase domain BED35_13415 PF00872 BED35_13415 BED35_13425 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BED35_13430 PF08448 PAS fold BED35_13445 PF06995 BED35_13445 BED35_13450 PF05954 Phage late control gene D protein (GPD) BED35_13460 PF00589 Phage integrase family BED35_13465 PF10709 BED35_13465 BED35_13470 PF05425 BED35_13470 BED35_13475 PF04234 CopC domain BED35_13480 PF00210 Ferritin-like domain BED35_13485 PF06440 DNA polymerase III, theta subunit BED35_13490 PF00561 alpha/beta hydrolase fold BED35_13495 PF00929 Exonuclease BED35_13500 PF00326 Prolyl oligopeptidase family BED35_13500 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BED35_13505 PF13995 YebF-like protein BED35_13510 PF04266 ASCH domain BED35_13515 PF07130 YebG protein BED35_13520 PF00270 DEAD/DEAH box helicase BED35_13520 PF00271 Helicase conserved C-terminal domain BED35_13520 PF03880 DbpA RNA binding domain BED35_13525 PF02222 ATP-grasp domain BED35_13530 PF03701 BED35_13530 BED35_13535 PF00425 chorismate binding enzyme BED35_13535 PF04715 Anthranilate synthase component I, N terminal region BED35_13540 PF00293 NUDIX domain BED35_13545 PF03313 BED35_13545 BED35_13545 PF03315 Serine dehydratase beta chain BED35_13550 PF01548 BED35_13550 BED35_13550 PF02371 BED35_13550 BED35_13555 PF00571 CBS domain BED35_13555 PF03471 Transporter associated domain BED35_13555 PF03741 BED35_13555 BED35_13560 PF03610 PTS system fructose IIA component BED35_13560 PF03830 PTS system sorbose subfamily IIB component BED35_13565 PF03609 BED35_13565 BED35_13570 PF03613 BED35_13570 BED35_13575 PF06173 BED35_13575 BED35_13580 PF02659 BED35_13580 BED35_13585 PF00593 TonB dependent receptor BED35_13585 PF07715 TonB-dependent Receptor Plug Domain BED35_13590 PF00989 PAS fold BED35_13590 PF00990 GGDEF domain BED35_13590 PF08448 PAS fold BED35_13590 PF13426 PAS domain BED35_13600 PF13847 Methyltransferase domain BED35_13605 PF00905 Penicillin binding protein transpeptidase domain BED35_13605 PF03717 Penicillin-binding Protein dimerisation domain BED35_13610 PF02578 Multi-copper polyphenol oxidoreductase laccase BED35_13615 PF00313 'Cold-shock' DNA-binding domain BED35_13620 PF10736 BED35_13620 BED35_13625 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BED35_13635 PF13269 BED35_13635 BED35_13640 PF10765 Protein of unknown function (DUF2591) BED35_13645 PF13974 BED35_13645 BED35_13650 PF13996 BED35_13650 BED35_13655 PF10964 BED35_13655 BED35_13660 PF12833 Helix-turn-helix domain BED35_13670 PF13520 Amino acid permease BED35_13675 PF00583 Acetyltransferase (GNAT) family BED35_13680 PF00005 ABC transporter BED35_13680 PF00664 ABC transporter transmembrane region BED35_13685 PF01163 RIO1 family BED35_13690 PF03372 Endonuclease/Exonuclease/phosphatase family BED35_13695 PF03498 Cytolethal distending toxin A/C family BED35_13700 PF00990 GGDEF domain BED35_13700 PF08447 PAS fold BED35_13700 PF13426 PAS domain BED35_13710 PF06411 HdeA/HdeB family BED35_13715 PF07007 Protein of unknown function (DUF1311) BED35_13720 PF12833 Helix-turn-helix domain BED35_13725 PF00892 EamA-like transporter family BED35_13735 PF03795 YCII-related domain BED35_13740 PF01638 HxlR-like helix-turn-helix BED35_13745 PF13460 NADH(P)-binding BED35_13750 PF01053 Cys/Met metabolism PLP-dependent enzyme BED35_13760 PF00717 Peptidase S24-like BED35_13765 PF00817 impB/mucB/samB family BED35_13765 PF11798 IMS family HHH motif BED35_13765 PF11799 impB/mucB/samB family C-terminal domain BED35_13765 PF13438 BED35_13765 BED35_13770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_13770 PF08447 PAS fold BED35_13780 PF00356 Bacterial regulatory proteins, lacI family BED35_13780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_13785 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED35_13785 PF08244 Glycosyl hydrolases family 32 C terminal BED35_13790 PF01306 LacY proton/sugar symporter BED35_13795 PF04932 BED35_13795 BED35_13800 PF00535 Glycosyl transferase family 2 BED35_13805 PF00180 Isocitrate/isopropylmalate dehydrogenase BED35_13810 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) BED35_13835 PF00180 Isocitrate/isopropylmalate dehydrogenase BED35_13840 PF00849 RNA pseudouridylate synthase BED35_13845 PF00293 NUDIX domain BED35_13850 PF03054 tRNA methyl transferase BED35_13855 PF04356 Protein of unknown function (DUF489) BED35_13860 PF00206 Lyase BED35_13860 PF08328 Adenylosuccinate lyase C-terminal BED35_13865 PF13505 Outer membrane protein beta-barrel domain BED35_13870 PF00072 Response regulator receiver domain BED35_13870 PF00486 Transcriptional regulatory protein, C terminal BED35_13875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_13875 PF08918 PhoQ Sensor BED35_13885 PF01546 Peptidase family M20/M25/M40 BED35_13885 PF07687 Peptidase dimerisation domain BED35_13890 PF02146 Sir2 family BED35_13900 PF02687 BED35_13900 BED35_13900 PF12704 MacB-like periplasmic core domain BED35_13905 PF00005 ABC transporter BED35_13910 PF02687 BED35_13910 BED35_13910 PF12704 MacB-like periplasmic core domain BED35_13915 PF00270 DEAD/DEAH box helicase BED35_13915 PF00271 Helicase conserved C-terminal domain BED35_13915 PF02559 CarD-like/TRCF domain BED35_13915 PF03461 TRCF domain BED35_13920 PF05433 BED35_13920 BED35_13925 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_13930 PF05728 Uncharacterised protein family (UPF0227) BED35_13935 PF00933 Glycosyl hydrolase family 3 N terminal domain BED35_13940 PF01636 Phosphotransferase enzyme family BED35_13945 PF13036 Protein of unknown function (DUF3897) BED35_13950 PF07233 Protein of unknown function (DUF1425) BED35_13955 PF01230 HIT domain BED35_13960 PF08501 Shikimate dehydrogenase substrate binding domain BED35_13965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_13965 PF12793 BED35_13965 BED35_13970 PF04055 Radical SAM superfamily BED35_13970 PF13394 4Fe-4S single cluster domain BED35_13975 PF13437 HlyD family secretion protein BED35_13980 PF00005 ABC transporter BED35_13980 PF00664 ABC transporter transmembrane region BED35_13980 PF03412 Peptidase C39 family BED35_13985 PF13650 Aspartyl protease BED35_13990 PF00367 phosphotransferase system, EIIB BED35_13990 PF02378 Phosphotransferase system, EIIC BED35_13995 PF01026 TatD related DNase BED35_14000 PF09115 DNA polymerase III, delta subunit, C terminal BED35_14000 PF13177 DNA polymerase III, delta subunit BED35_14005 PF02223 Thymidylate kinase BED35_14010 PF02618 YceG-like family BED35_14015 PF01063 Aminotransferase class IV BED35_14020 PF00109 Beta-ketoacyl synthase, N-terminal domain BED35_14020 PF02801 Beta-ketoacyl synthase, C-terminal domain BED35_14025 PF00550 Phosphopantetheine attachment site BED35_14030 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_14035 PF00698 Acyl transferase domain BED35_14040 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BED35_14040 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BED35_14045 PF02504 Fatty acid synthesis protein BED35_14050 PF01783 Ribosomal L32p protein family BED35_14055 PF02620 BED35_14055 BED35_14060 PF02545 Maf-like protein BED35_14065 PF00849 RNA pseudouridylate synthase BED35_14065 PF01479 S4 domain BED35_14070 PF00575 S1 RNA binding domain BED35_14070 PF10150 Ribonuclease E/G family BED35_14070 PF12111 Polyribonucleotide phosphorylase C terminal BED35_14075 PF03992 Antibiotic biosynthesis monooxygenase BED35_14080 PF01979 Amidohydrolase family BED35_14085 PF06183 DinI-like family BED35_14090 PF13991 BED35_14090 BED35_14095 PF01266 FAD dependent oxidoreductase BED35_14100 PF00196 Bacterial regulatory proteins, luxR family BED35_14105 PF01594 BED35_14105 BED35_14110 PF00581 Rhodanese-like domain BED35_14110 PF12368 BED35_14110 BED35_14120 PF03916 BED35_14120 BED35_14125 PF13247 4Fe-4S dicluster domain BED35_14135 PF00072 Response regulator receiver domain BED35_14135 PF00196 Bacterial regulatory proteins, luxR family BED35_14140 PF03279 BED35_14140 BED35_14150 PF07681 BED35_14150 BED35_14160 PF07690 Major Facilitator Superfamily BED35_14165 PF00854 POT family BED35_14170 PF00535 Glycosyl transferase family 2 BED35_14175 PF04349 Periplasmic glucan biosynthesis protein, MdoG BED35_14180 PF01757 BED35_14180 BED35_14190 PF01548 BED35_14190 BED35_14190 PF02371 BED35_14190 BED35_14195 PF00999 Sodium/hydrogen exchanger family BED35_14195 PF02080 TrkA-C domain BED35_14195 PF03471 Transporter associated domain BED35_14200 PF00892 EamA-like transporter family BED35_14205 PF00765 Autoinducer synthetase BED35_14210 PF00196 Bacterial regulatory proteins, luxR family BED35_14210 PF03472 Autoinducer binding domain BED35_14225 PF08534 Redoxin BED35_14235 PF03916 BED35_14235 BED35_14240 PF12800 4Fe-4S binding domain BED35_14240 PF13247 4Fe-4S dicluster domain BED35_14245 PF13435 Cytochrome c554 and c-prime BED35_14250 PF02335 Cytochrome c552 BED35_14260 PF04358 DsrC like protein BED35_14265 PF00708 Acylphosphatase BED35_14270 PF07784 BED35_14270 BED35_14280 PF10672 S-adenosylmethionine-dependent methyltransferase BED35_14285 PF08755 Hemimethylated DNA-binding protein YccV like BED35_14290 PF13380 CoA binding domain BED35_14295 PF09829 BED35_14295 BED35_14300 PF02142 MGS-like domain BED35_14305 PF00580 UvrD/REP helicase N-terminal domain BED35_14305 PF12462 BED35_14305 BED35_14305 PF13361 UvrD-like helicase C-terminal domain BED35_14310 PF03733 BED35_14310 BED35_14315 PF12805 BED35_14315 BED35_14315 PF13515 BED35_14315 BED35_14320 PF04993 TfoX N-terminal domain BED35_14320 PF04994 TfoX C-terminal domain BED35_14330 PF00691 OmpA family BED35_14330 PF01389 OmpA-like transmembrane domain BED35_14335 PF06303 Organiser of macrodomain of Terminus of chromosome BED35_14335 PF17414 BED35_14335 BED35_14340 PF05362 Lon protease (S16) C-terminal proteolytic domain BED35_14340 PF13654 AAA domain BED35_14345 PF07977 FabA-like domain BED35_14350 PF01638 HxlR-like helix-turn-helix BED35_14355 PF00109 Beta-ketoacyl synthase, N-terminal domain BED35_14355 PF02801 Beta-ketoacyl synthase, C-terminal domain BED35_14360 PF03886 Protein of unknown function (DUF330) BED35_14365 PF02470 BED35_14365 BED35_14370 PF04403 BED35_14370 BED35_14375 PF00005 ABC transporter BED35_14375 PF12848 ABC transporter BED35_14375 PF16326 BED35_14375 BED35_14380 PF01170 Putative RNA methylase family UPF0020 BED35_14380 PF02926 THUMP domain BED35_14380 PF10672 S-adenosylmethionine-dependent methyltransferase BED35_14385 PF00111 2Fe-2S iron-sulfur cluster binding domain BED35_14385 PF03473 MOSC domain BED35_14385 PF03476 MOSC N-terminal beta barrel domain BED35_14390 PF07126 BED35_14390 BED35_14395 PF01180 Dihydroorotate dehydrogenase BED35_14400 PF01433 Peptidase family M1 BED35_14400 PF11940 Domain of unknown function (DUF3458) BED35_14400 PF17432 BED35_14400 BED35_14405 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BED35_14410 PF00152 tRNA synthetases class II (D, K and N) BED35_14410 PF01336 OB-fold nucleic acid binding domain BED35_14415 PF00267 Gram-negative porin BED35_14420 PF00155 Aminotransferase class I and II BED35_14430 PF00753 Metallo-beta-lactamase superfamily BED35_14435 PF05951 BED35_14435 BED35_14440 PF01471 Putative peptidoglycan binding domain BED35_14440 PF03734 L,D-transpeptidase catalytic domain BED35_14445 PF04310 MukB N-terminal BED35_14445 PF13558 Putative exonuclease SbcCD, C subunit BED35_14445 PF16330 BED35_14445 BED35_14450 PF04288 MukE-like family BED35_14455 PF03882 KicB killing factor BED35_14455 PF17192 BED35_14455 BED35_14455 PF17193 BED35_14455 BED35_14460 PF13847 Methyltransferase domain BED35_14465 PF02698 DUF218 domain BED35_14470 PF03881 Fructosamine kinase BED35_14475 PF02348 Cytidylyltransferase BED35_14480 PF03966 Trm112p-like protein BED35_14485 PF00313 'Cold-shock' DNA-binding domain BED35_14490 PF00313 'Cold-shock' DNA-binding domain BED35_14495 PF07063 Domain of unknown function (DUF1338) BED35_14500 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BED35_14505 PF00005 ABC transporter BED35_14505 PF00664 ABC transporter transmembrane region BED35_14510 PF00753 Metallo-beta-lactamase superfamily BED35_14510 PF03772 BED35_14510 BED35_14510 PF13567 BED35_14510 BED35_14515 PF00216 Bacterial DNA-binding protein BED35_14520 PF00575 S1 RNA binding domain BED35_14525 PF02224 Cytidylate kinase BED35_14530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED35_14535 PF00266 Aminotransferase class-V BED35_14540 PF04239 Protein of unknown function (DUF421) BED35_14545 PF00710 Asparaginase BED35_14550 PF02624 YcaO-like family BED35_14555 PF01226 Formate/nitrite transporter BED35_14560 PF01228 Glycine radical BED35_14560 PF02901 Pyruvate formate lyase BED35_14565 PF04055 Radical SAM superfamily BED35_14565 PF13353 4Fe-4S single cluster domain BED35_14570 PF07690 Major Facilitator Superfamily BED35_14575 PF00872 BED35_14575 BED35_14585 PF01548 BED35_14585 BED35_14585 PF02371 BED35_14585 BED35_14590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED35_14590 PF02403 Seryl-tRNA synthetase N-terminal domain BED35_14595 PF00004 ATPase family associated with various cellular activities (AAA) BED35_14595 PF12002 MgsA AAA+ ATPase C terminal BED35_14595 PF16193 BED35_14595 BED35_14600 PF03548 Outer membrane lipoprotein carrier protein LolA BED35_14605 PF01580 FtsK/SpoIIIE family BED35_14605 PF09397 Ftsk gamma domain BED35_14605 PF13491 BED35_14605 BED35_14610 PF01037 AsnC family BED35_14610 PF13412 Winged helix-turn-helix DNA-binding BED35_14615 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_14620 PF00005 ABC transporter BED35_14620 PF00664 ABC transporter transmembrane region BED35_14625 PF00005 ABC transporter BED35_14625 PF00664 ABC transporter transmembrane region BED35_14630 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BED35_14635 PF01176 Translation initiation factor 1A / IF-1 BED35_14640 PF00004 ATPase family associated with various cellular activities (AAA) BED35_14640 PF02861 Clp amino terminal domain BED35_14640 PF07724 AAA domain (Cdc48 subfamily) BED35_14640 PF10431 C-terminal, D2-small domain, of ClpB protein BED35_14645 PF02617 ATP-dependent Clp protease adaptor protein ClpS BED35_14650 PF00313 'Cold-shock' DNA-binding domain BED35_14655 PF00005 ABC transporter BED35_14655 PF02687 BED35_14655 BED35_14655 PF12704 MacB-like periplasmic core domain BED35_14660 PF16576 BED35_14660 BED35_14665 PF04393 BED35_14665 BED35_14670 PF11398 Protein of unknown function (DUF2813) BED35_14675 PF03956 BED35_14675 BED35_14680 PF03063 Prismane/CO dehydrogenase family BED35_14685 PF00111 2Fe-2S iron-sulfur cluster binding domain BED35_14685 PF00175 Oxidoreductase NAD-binding domain BED35_14685 PF00970 Oxidoreductase FAD-binding domain BED35_14690 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_14690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_14690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_14695 PF04072 Leucine carboxyl methyltransferase BED35_14700 PF01212 Beta-eliminating lyase BED35_14705 PF11066 BED35_14705 BED35_14705 PF13460 NADH(P)-binding BED35_14710 PF01370 NAD dependent epimerase/dehydratase family BED35_14715 PF12883 Protein of unknown function (DUF3828) BED35_14720 PF00005 ABC transporter BED35_14725 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_14730 PF00528 Binding-protein-dependent transport system inner membrane component BED35_14735 PF00528 Binding-protein-dependent transport system inner membrane component BED35_14740 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_14745 PF05958 tRNA (Uracil-5-)-methyltransferase BED35_14750 PF10767 BED35_14750 BED35_14755 PF00528 Binding-protein-dependent transport system inner membrane component BED35_14760 PF00528 Binding-protein-dependent transport system inner membrane component BED35_14765 PF00005 ABC transporter BED35_14765 PF08402 TOBE domain BED35_14770 PF13416 Bacterial extracellular solute-binding protein BED35_14775 PF10722 Putative bacterial sensory transduction regulator BED35_14780 PF07214 BED35_14780 BED35_14785 PF00462 Glutaredoxin BED35_14790 PF02080 TrkA-C domain BED35_14790 PF06826 BED35_14790 BED35_14795 PF01569 PAP2 superfamily BED35_14800 PF01569 PAP2 superfamily BED35_14805 PF01791 DeoC/LacD family aldolase BED35_14810 PF00455 BED35_14810 BED35_14810 PF08220 DeoR-like helix-turn-helix domain BED35_14815 PF03222 Tryptophan/tyrosine permease family BED35_14820 PF03313 BED35_14820 BED35_14820 PF03315 Serine dehydratase beta chain BED35_14825 PF01548 BED35_14825 BED35_14825 PF02371 BED35_14825 BED35_14830 PF00768 D-alanyl-D-alanine carboxypeptidase BED35_14830 PF07943 Penicillin-binding protein 5, C-terminal domain BED35_14835 PF00291 Pyridoxal-phosphate dependent enzyme BED35_14835 PF00571 CBS domain BED35_14840 PF01053 Cys/Met metabolism PLP-dependent enzyme BED35_14845 PF00528 Binding-protein-dependent transport system inner membrane component BED35_14850 PF00005 ABC transporter BED35_14850 PF09383 NIL domain BED35_14855 PF03180 NLPA lipoprotein BED35_14860 PF03171 2OG-Fe(II) oxygenase superfamily BED35_14860 PF14226 non-haem dioxygenase in morphine synthesis N-terminal BED35_14865 PF12710 haloacid dehalogenase-like hydrolase BED35_14870 PF00043 Glutathione S-transferase, C-terminal domain BED35_14870 PF02798 Glutathione S-transferase, N-terminal domain BED35_14875 PF00593 TonB dependent receptor BED35_14875 PF07715 TonB-dependent Receptor Plug Domain BED35_14880 PF00005 ABC transporter BED35_14885 PF01032 FecCD transport family BED35_14890 PF00324 Amino acid permease BED35_14895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_14895 PF03466 LysR substrate binding domain BED35_14910 PF03601 BED35_14910 BED35_14915 PF01261 Xylose isomerase-like TIM barrel BED35_14920 PF00577 Outer membrane usher protein BED35_14920 PF13953 PapC C-terminal domain BED35_14920 PF13954 PapC N-terminal domain BED35_14925 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_14925 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_14935 PF17550 BED35_14935 BED35_14940 PF00486 Transcriptional regulatory protein, C terminal BED35_14945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED35_14945 PF02378 Phosphotransferase system, EIIC BED35_14950 PF00294 pfkB family carbohydrate kinase BED35_14955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_14955 PF00381 PTS HPr component phosphorylation site BED35_14960 PF00293 NUDIX domain BED35_14965 PF03264 NapC/NirT cytochrome c family, N-terminal region BED35_14970 PF00384 Molybdopterin oxidoreductase BED35_14970 PF01568 Molydopterin dinucleotide binding domain BED35_14975 PF03692 BED35_14975 BED35_14980 PF03222 Tryptophan/tyrosine permease family BED35_14985 PF01132 Elongation factor P (EF-P) OB domain BED35_14985 PF08207 Elongation factor P (EF-P) KOW-like domain BED35_14985 PF09285 Elongation factor P, C-terminal BED35_14990 PF03786 D-mannonate dehydratase (UxuA) BED35_15000 PF01232 Mannitol dehydrogenase Rossmann domain BED35_15000 PF08125 Mannitol dehydrogenase C-terminal domain BED35_15005 PF00392 Bacterial regulatory proteins, gntR family BED35_15005 PF07729 FCD domain BED35_15015 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED35_15015 PF07683 Cobalamin synthesis protein cobW C-terminal domain BED35_15020 PF01569 PAP2 superfamily BED35_15025 PF00877 NlpC/P60 family BED35_15035 PF00563 EAL domain BED35_15035 PF12792 BED35_15035 BED35_15040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_15045 PF00528 Binding-protein-dependent transport system inner membrane component BED35_15050 PF00528 Binding-protein-dependent transport system inner membrane component BED35_15050 PF12911 BED35_15050 BED35_15055 PF00005 ABC transporter BED35_15055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED35_15060 PF13989 BED35_15060 BED35_15065 PF07690 Major Facilitator Superfamily BED35_15070 PF00849 RNA pseudouridylate synthase BED35_15070 PF01479 S4 domain BED35_15075 PF00271 Helicase conserved C-terminal domain BED35_15075 PF04851 Type III restriction enzyme, res subunit BED35_15080 PF01386 Ribosomal L25p family BED35_15085 PF04245 BED35_15085 BED35_15090 PF07208 Protein of unknown function (DUF1414) BED35_15095 PF00884 Sulfatase BED35_15095 PF11893 BED35_15095 BED35_15110 PF07377 Protein of unknown function (DUF1493) BED35_15115 PF00872 BED35_15115 BED35_15120 PF06551 BED35_15120 BED35_15125 PF01527 Transposase BED35_15130 PF13276 BED35_15130 BED35_15140 PF00891 O-methyltransferase BED35_15145 PF00194 Eukaryotic-type carbonic anhydrase BED35_15150 PF00232 Glycosyl hydrolase family 1 BED35_15155 PF00367 phosphotransferase system, EIIB BED35_15155 PF02378 Phosphotransferase system, EIIC BED35_15160 PF01380 SIS domain BED35_15160 PF01418 Helix-turn-helix domain, rpiR family BED35_15170 PF10828 BED35_15170 BED35_15180 PF06530 BED35_15180 BED35_15185 PF00717 Peptidase S24-like BED35_15185 PF01381 Helix-turn-helix BED35_15190 PF06183 DinI-like family BED35_15195 PF01278 Omptin family BED35_15200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_15200 PF00672 HAMP domain BED35_15200 PF02743 Cache domain BED35_15205 PF12706 Beta-lactamase superfamily domain BED35_15210 PF13347 MFS/sugar transport protein BED35_15215 PF00144 Beta-lactamase BED35_15230 PF00267 Gram-negative porin BED35_15235 PF00529 HlyD family secretion protein BED35_15240 PF13533 Biotin-lipoyl like BED35_15245 PF07690 Major Facilitator Superfamily BED35_15250 PF01627 Hpt domain BED35_15250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_15250 PF16359 BED35_15250 BED35_15255 PF00072 Response regulator receiver domain BED35_15255 PF00196 Bacterial regulatory proteins, luxR family BED35_15260 PF00072 Response regulator receiver domain BED35_15260 PF00512 His Kinase A (phospho-acceptor) domain BED35_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_15260 PF09456 RcsC Alpha-Beta-Loop (ABL) BED35_15265 PF00521 DNA gyrase/topoisomerase IV, subunit A BED35_15265 PF03989 DNA gyrase C-terminal domain, beta-propeller BED35_15270 PF13489 Methyltransferase domain BED35_15275 PF00317 Ribonucleotide reductase, all-alpha domain BED35_15275 PF02867 Ribonucleotide reductase, barrel domain BED35_15275 PF03477 ATP cone domain BED35_15280 PF00268 Ribonucleotide reductase, small chain BED35_15290 PF03974 Ecotin BED35_15305 PF00994 Probable molybdopterin binding domain BED35_15310 PF03222 Tryptophan/tyrosine permease family BED35_15315 PF07437 BED35_15315 BED35_15320 PF00199 Catalase BED35_15320 PF06628 Catalase-related immune-responsive BED35_15325 PF00501 AMP-binding enzyme BED35_15325 PF13193 AMP-binding enzyme C-terminal domain BED35_15330 PF13378 Enolase C-terminal domain-like BED35_15335 PF00378 Enoyl-CoA hydratase/isomerase family BED35_15340 PF12697 Alpha/beta hydrolase family BED35_15345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_15345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_15345 PF16582 BED35_15345 BED35_15350 PF00425 chorismate binding enzyme BED35_15355 PF05957 BED35_15355 BED35_15360 PF00920 Dehydratase family BED35_15365 PF03928 Domain of unknown function (DUF336) BED35_15370 PF07690 Major Facilitator Superfamily BED35_15375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED35_15375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED35_15380 PF00356 Bacterial regulatory proteins, lacI family BED35_15380 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_15385 PF00106 short chain dehydrogenase BED35_15390 PF01202 Shikimate kinase BED35_15395 PF04074 Domain of unknown function (DUF386) BED35_15400 PF06496 BED35_15400 BED35_15410 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_15415 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_15420 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED35_15420 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED35_15425 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED35_15430 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BED35_15435 PF12838 4Fe-4S dicluster domain BED35_15440 PF00146 NADH dehydrogenase BED35_15445 PF00384 Molybdopterin oxidoreductase BED35_15445 PF01568 Molydopterin dinucleotide binding domain BED35_15445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED35_15445 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED35_15445 PF13510 2Fe-2S iron-sulfur cluster binding domain BED35_15450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED35_15450 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED35_15455 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin BED35_15460 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED35_15460 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED35_15465 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED35_15470 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BED35_15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_15475 PF03466 LysR substrate binding domain BED35_15480 PF00155 Aminotransferase class I and II BED35_15485 PF13023 HD domain BED35_15490 PF02080 TrkA-C domain BED35_15490 PF03600 Citrate transporter BED35_15500 PF13419 Haloacid dehalogenase-like hydrolase BED35_15505 PF03887 YfbU domain BED35_15510 PF04217 BED35_15510 BED35_15515 PF00871 Acetokinase family BED35_15520 PF01515 Phosphate acetyl/butaryl transferase BED35_15520 PF07085 DRTGG domain BED35_15520 PF13500 AAA domain BED35_15525 PF00356 Bacterial regulatory proteins, lacI family BED35_15525 PF13377 Periplasmic binding protein-like domain BED35_15530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_15535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED35_15540 PF03611 BED35_15540 BED35_15545 PF01548 BED35_15545 BED35_15545 PF02371 BED35_15545 BED35_15550 PF00293 NUDIX domain BED35_15560 PF00563 EAL domain BED35_15565 PF01370 NAD dependent epimerase/dehydratase family BED35_15565 PF08338 Domain of unknown function (DUF1731) BED35_15575 PF00005 ABC transporter BED35_15580 PF00528 Binding-protein-dependent transport system inner membrane component BED35_15585 PF00528 Binding-protein-dependent transport system inner membrane component BED35_15590 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_15595 PF02441 Flavoprotein BED35_15600 PF00156 Phosphoribosyl transferase domain BED35_15600 PF13522 Glutamine amidotransferase domain BED35_15605 PF02674 BED35_15605 BED35_15610 PF05036 Sporulation related domain BED35_15615 PF02875 Mur ligase family, glutamate ligase domain BED35_15615 PF08245 Mur ligase middle domain BED35_15620 PF01039 Carboxyl transferase domain BED35_15625 PF09335 BED35_15625 BED35_15630 PF01416 tRNA pseudouridine synthase BED35_15635 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED35_15635 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED35_15640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED35_15640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED35_15640 PF11890 Domain of unknown function (DUF3410) BED35_15645 PF07883 Cupin domain BED35_15645 PF12833 Helix-turn-helix domain BED35_15655 PF00892 EamA-like transporter family BED35_15660 PF00155 Aminotransferase class I and II BED35_15660 PF00392 Bacterial regulatory proteins, gntR family BED35_15665 PF00578 AhpC/TSA family BED35_15670 PF13462 Thioredoxin BED35_15675 PF02683 BED35_15675 BED35_15675 PF11412 Disulphide bond corrector protein DsbC BED35_15675 PF13899 Thioredoxin-like BED35_15690 PF03600 Citrate transporter BED35_15695 PF00328 Histidine phosphatase superfamily (branch 2) BED35_15700 PF00356 Bacterial regulatory proteins, lacI family BED35_15700 PF13377 Periplasmic binding protein-like domain BED35_15705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED35_15710 PF02378 Phosphotransferase system, EIIC BED35_15715 PF00232 Glycosyl hydrolase family 1 BED35_15720 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED35_15725 PF02264 LamB porin BED35_15730 PF01177 Asp/Glu/Hydantoin racemase BED35_15740 PF00109 Beta-ketoacyl synthase, N-terminal domain BED35_15740 PF02801 Beta-ketoacyl synthase, C-terminal domain BED35_15745 PF01266 FAD dependent oxidoreductase BED35_15745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BED35_15750 PF08891 BED35_15750 BED35_15755 PF04315 BED35_15755 BED35_15760 PF01925 BED35_15760 BED35_15765 PF03411 Penicillin-insensitive murein endopeptidase BED35_15770 PF01264 Chorismate synthase BED35_15775 PF05175 Methyltransferase small domain BED35_15780 PF01713 Smr domain BED35_15785 PF00300 Histidine phosphatase superfamily (branch 1) BED35_15790 PF00378 Enoyl-CoA hydratase/isomerase family BED35_15790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED35_15790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED35_15795 PF00108 Thiolase, N-terminal domain BED35_15795 PF02803 Thiolase, C-terminal domain BED35_15800 PF04175 Protein of unknown function (DUF406) BED35_15805 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BED35_15810 PF04333 BED35_15810 BED35_15815 PF14559 Tetratricopeptide repeat BED35_15820 PF03918 Cytochrome C biogenesis protein BED35_15825 PF08534 Redoxin BED35_15830 PF01578 BED35_15830 BED35_15830 PF16327 BED35_15830 BED35_15835 PF03100 CcmE BED35_15840 PF04995 BED35_15840 BED35_15845 PF01578 BED35_15845 BED35_15850 PF03379 BED35_15850 BED35_15855 PF00005 ABC transporter BED35_15860 PF01548 BED35_15860 BED35_15860 PF02371 BED35_15860 BED35_15865 PF01226 Formate/nitrite transporter BED35_15875 PF00589 Phage integrase family BED35_15875 PF13356 Domain of unknown function (DUF4102) BED35_15885 PF04606 BED35_15885 BED35_15890 PF06048 BED35_15890 BED35_15890 PF08273 Zinc-binding domain of primase-helicase BED35_15890 PF13362 Toprim domain BED35_15910 PF05929 BED35_15910 BED35_15915 PF05125 BED35_15915 BED35_15925 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED35_15935 PF03831 PhnA protein BED35_15935 PF08274 PhnA Zinc-Ribbon BED35_15940 PF03551 Transcriptional regulator PadR-like family BED35_15945 PF12977 Domain of Unknown Function with PDB structure (DUF3861) BED35_15950 PF00232 Glycosyl hydrolase family 1 BED35_15955 PF00367 phosphotransferase system, EIIB BED35_15955 PF02378 Phosphotransferase system, EIIC BED35_15960 PF00356 Bacterial regulatory proteins, lacI family BED35_15960 PF13377 Periplasmic binding protein-like domain BED35_15965 PF04264 YceI-like domain BED35_15970 PF01292 Prokaryotic cytochrome b561 BED35_15975 PF07859 alpha/beta hydrolase fold BED35_15985 PF03886 Protein of unknown function (DUF330) BED35_15990 PF02470 BED35_15990 BED35_15995 PF00005 ABC transporter BED35_16000 PF02405 BED35_16000 BED35_16005 PF07690 Major Facilitator Superfamily BED35_16010 PF00440 Bacterial regulatory proteins, tetR family BED35_16010 PF13977 Bacterial transcriptional repressor BED35_16015 PF07969 Amidohydrolase family BED35_16020 PF00324 Amino acid permease BED35_16025 PF13406 Transglycosylase SLT domain BED35_16030 PF13343 Bacterial extracellular solute-binding protein BED35_16035 PF00528 Binding-protein-dependent transport system inner membrane component BED35_16040 PF00005 ABC transporter BED35_16050 PF09900 BED35_16050 BED35_16055 PF15970 BED35_16055 BED35_16060 PF01292 Prokaryotic cytochrome b561 BED35_16065 PF00155 Aminotransferase class I and II BED35_16070 PF13302 Acetyltransferase (GNAT) domain BED35_16075 PF07350 Protein of unknown function (DUF1479) BED35_16085 PF00072 Response regulator receiver domain BED35_16085 PF04397 LytTr DNA-binding domain BED35_16095 PF02685 Glucokinase BED35_16100 PF05232 BED35_16100 BED35_16105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_16105 PF03466 LysR substrate binding domain BED35_16110 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_16110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_16110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_16115 PF00248 Aldo/keto reductase family BED35_16120 PF10697 BED35_16120 BED35_16125 PF01566 BED35_16125 BED35_16130 PF01773 Na+ dependent nucleoside transporter N-terminus BED35_16130 PF07662 Na+ dependent nucleoside transporter C-terminus BED35_16130 PF07670 Nucleoside recognition BED35_16160 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED35_16175 PF06042 Bacterial protein of unknown function (DUF925) BED35_16180 PF14282 BED35_16180 BED35_16185 PF12843 BED35_16185 BED35_16190 PF00533 BRCA1 C Terminus (BRCT) domain BED35_16190 PF01653 NAD-dependent DNA ligase adenylation domain BED35_16190 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BED35_16190 PF03120 NAD-dependent DNA ligase OB-fold domain BED35_16190 PF12826 Helix-hairpin-helix motif BED35_16190 PF14520 Helix-hairpin-helix domain BED35_16195 PF04354 ZipA, C-terminal FtsZ-binding domain BED35_16200 PF07264 Etoposide-induced protein 2 BED35_16205 PF00291 Pyridoxal-phosphate dependent enzyme BED35_16210 PF00381 PTS HPr component phosphorylation site BED35_16215 PF00391 PEP-utilising enzyme, mobile domain BED35_16215 PF02896 PEP-utilising enzyme, TIM barrel domain BED35_16215 PF05524 PEP-utilising enzyme, N-terminal BED35_16220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED35_16225 PF00512 His Kinase A (phospho-acceptor) domain BED35_16225 PF00672 HAMP domain BED35_16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_16230 PF00072 Response regulator receiver domain BED35_16230 PF00486 Transcriptional regulatory protein, C terminal BED35_16235 PF16576 BED35_16235 BED35_16240 PF00005 ABC transporter BED35_16240 PF02687 BED35_16240 BED35_16240 PF12704 MacB-like periplasmic core domain BED35_16245 PF00291 Pyridoxal-phosphate dependent enzyme BED35_16250 PF00005 ABC transporter BED35_16255 PF00528 Binding-protein-dependent transport system inner membrane component BED35_16260 PF00528 Binding-protein-dependent transport system inner membrane component BED35_16265 PF13531 Bacterial extracellular solute-binding protein BED35_16270 PF07690 Major Facilitator Superfamily BED35_16275 PF01380 SIS domain BED35_16275 PF01418 Helix-turn-helix domain, rpiR family BED35_16280 PF04074 Domain of unknown function (DUF386) BED35_16285 PF00480 ROK family BED35_16290 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BED35_16295 PF00701 Dihydrodipicolinate synthetase family BED35_16300 PF01548 BED35_16300 BED35_16300 PF02371 BED35_16300 BED35_16305 PF04261 Dyp-type peroxidase family BED35_16310 PF06572 Protein of unknown function (DUF1131) BED35_16315 PF04076 Bacterial OB fold (BOF) protein BED35_16320 PF00583 Acetyltransferase (GNAT) family BED35_16325 PF01218 Coproporphyrinogen III oxidase BED35_16330 PF02639 BED35_16330 BED35_16340 PF00390 Malic enzyme, N-terminal domain BED35_16340 PF01515 Phosphate acetyl/butaryl transferase BED35_16340 PF03949 Malic enzyme, NAD binding domain BED35_16345 PF00293 NUDIX domain BED35_16355 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BED35_16360 PF00384 Molybdopterin oxidoreductase BED35_16360 PF01568 Molydopterin dinucleotide binding domain BED35_16360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED35_16360 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED35_16365 PF03927 NapD protein BED35_16370 PF12838 4Fe-4S dicluster domain BED35_16370 PF13187 4Fe-4S dicluster domain BED35_16375 PF00072 Response regulator receiver domain BED35_16375 PF00196 Bacterial regulatory proteins, luxR family BED35_16380 PF09904 Winged helix-turn helix BED35_16385 PF00873 AcrB/AcrD/AcrF family BED35_16395 PF02624 YcaO-like family BED35_16400 PF12688 Tetratrico peptide repeat BED35_16405 PF03960 ArsC family BED35_16410 PF01546 Peptidase family M20/M25/M40 BED35_16410 PF07687 Peptidase dimerisation domain BED35_16415 PF02557 D-alanyl-D-alanine carboxypeptidase BED35_16420 PF13980 BED35_16420 BED35_16435 PF13505 Outer membrane protein beta-barrel domain BED35_16450 PF01548 BED35_16450 BED35_16450 PF02371 BED35_16450 BED35_16455 PF03245 BED35_16455 BED35_16460 PF02230 Phospholipase/Carboxylesterase BED35_16470 PF05127 Helicase BED35_16470 PF08351 Domain of unknown function (DUF1726) BED35_16470 PF13718 GNAT acetyltransferase 2 BED35_16470 PF17176 BED35_16470 BED35_16475 PF04284 BED35_16475 BED35_16480 PF04228 BED35_16480 BED35_16485 PF01259 SAICAR synthetase BED35_16490 PF06804 NlpB/DapX lipoprotein BED35_16495 PF00701 Dihydrodipicolinate synthetase family BED35_16500 PF13740 ACT domain BED35_16505 PF00578 AhpC/TSA family BED35_16510 PF01594 BED35_16510 BED35_16515 PF01435 Peptidase family M48 BED35_16515 PF14559 Tetratricopeptide repeat BED35_16520 PF03960 ArsC family BED35_16525 PF00308 Bacterial dnaA protein BED35_16530 PF00860 Permease family BED35_16535 PF14681 Uracil phosphoribosyltransferase BED35_16545 PF00551 Formyl transferase BED35_16550 PF13302 Acetyltransferase (GNAT) domain BED35_16560 PF00005 ABC transporter BED35_16565 PF00528 Binding-protein-dependent transport system inner membrane component BED35_16570 PF00528 Binding-protein-dependent transport system inner membrane component BED35_16580 PF02541 Ppx/GppA phosphatase family BED35_16585 PF11119 BED35_16585 BED35_16595 PF00563 EAL domain BED35_16595 PF00990 GGDEF domain BED35_16595 PF05231 BED35_16595 BED35_16595 PF08447 PAS fold BED35_16595 PF08448 PAS fold BED35_16600 PF00012 Hsp70 protein BED35_16605 PF13437 HlyD family secretion protein BED35_16605 PF13533 Biotin-lipoyl like BED35_16610 PF00873 AcrB/AcrD/AcrF family BED35_16615 PF00873 AcrB/AcrD/AcrF family BED35_16620 PF07690 Major Facilitator Superfamily BED35_16625 PF00512 His Kinase A (phospho-acceptor) domain BED35_16625 PF00672 HAMP domain BED35_16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_16630 PF00072 Response regulator receiver domain BED35_16630 PF00486 Transcriptional regulatory protein, C terminal BED35_16635 PF07411 Domain of unknown function (DUF1508) BED35_16640 PF01136 BED35_16640 BED35_16640 PF16325 BED35_16640 BED35_16645 PF00781 Diacylglycerol kinase catalytic domain BED35_16650 PF03608 BED35_16650 BED35_16655 PF03612 BED35_16655 BED35_16655 PF07663 BED35_16655 BED35_16660 PF03829 PTS system glucitol/sorbitol-specific IIA component BED35_16665 PF00106 short chain dehydrogenase BED35_16670 PF06923 BED35_16670 BED35_16675 PF00455 BED35_16675 BED35_16675 PF08220 DeoR-like helix-turn-helix domain BED35_16680 PF00571 CBS domain BED35_16680 PF01380 SIS domain BED35_16685 PF08816 Inhibitor of vertebrate lysozyme (Ivy) BED35_16695 PF08543 Phosphomethylpyrimidine kinase BED35_16710 PF03864 Phage major capsid protein E BED35_16725 PF00872 BED35_16725 BED35_16755 PF00589 Phage integrase family BED35_16765 PF01548 BED35_16765 BED35_16765 PF02371 BED35_16765 BED35_16770 PF00034 Cytochrome c BED35_16770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED35_16780 PF12318 BED35_16780 BED35_16790 PF00117 Glutamine amidotransferase class-I BED35_16790 PF00958 GMP synthase C terminal domain BED35_16790 PF02540 NAD synthase BED35_16795 PF00478 IMP dehydrogenase / GMP reductase domain BED35_16795 PF00571 CBS domain BED35_16800 PF02601 BED35_16800 BED35_16800 PF13742 BED35_16800 BED35_16805 PF07191 zinc-ribbons BED35_16810 PF03547 BED35_16810 BED35_16815 PF01548 BED35_16815 BED35_16815 PF02371 BED35_16815 BED35_16820 PF01926 50S ribosome-binding GTPase BED35_16820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BED35_16830 PF13360 PQQ-like domain BED35_16840 PF03129 Anticodon binding domain BED35_16840 PF13393 Histidyl-tRNA synthetase BED35_16845 PF04551 GcpE protein BED35_16850 PF13413 Helix-turn-helix domain BED35_16850 PF13464 BED35_16850 BED35_16855 PF13181 Tetratricopeptide repeat BED35_16860 PF04055 Radical SAM superfamily BED35_16865 PF00334 Nucleoside diphosphate kinase BED35_16875 PF00905 Penicillin binding protein transpeptidase domain BED35_16875 PF00912 Transglycosylase BED35_16875 PF06832 BED35_16875 BED35_16880 PF00207 Alpha-2-macroglobulin family BED35_16880 PF01835 MG2 domain BED35_16880 PF07703 Alpha-2-macroglobulin family N-terminal region BED35_16880 PF10569 Alpha-macro-globulin thiol-ester bond-forming region BED35_16880 PF11974 Alpha-2-macroglobulin MG1 domain BED35_16885 PF03212 Pertactin BED35_16885 PF03797 Autotransporter beta-domain BED35_16890 PF07179 BED35_16890 BED35_16890 PF14581 BED35_16890 BED35_16895 PF00883 Cytosol aminopeptidase family, catalytic domain BED35_16895 PF12404 BED35_16895 BED35_16900 PF04384 Iron-sulphur cluster assembly BED35_16905 PF00111 2Fe-2S iron-sulfur cluster binding domain BED35_16910 PF00012 Hsp70 protein BED35_16915 PF00226 DnaJ domain BED35_16915 PF07743 HSCB C-terminal oligomerisation domain BED35_16920 PF01521 Iron-sulphur cluster biosynthesis BED35_16925 PF01592 NifU-like N terminal domain BED35_16930 PF00266 Aminotransferase class-V BED35_16935 PF02082 Transcriptional regulator BED35_16940 PF00588 SpoU rRNA Methylase family BED35_16945 PF00459 Inositol monophosphatase family BED35_16950 PF03824 BED35_16950 BED35_16955 PF06226 BED35_16955 BED35_16965 PF12832 MFS_1 like family BED35_16970 PF00464 Serine hydroxymethyltransferase BED35_16975 PF00042 Globin BED35_16975 PF00175 Oxidoreductase NAD-binding domain BED35_16975 PF00970 Oxidoreductase FAD-binding domain BED35_16980 PF14502 Helix-turn-helix domain BED35_16980 PF14503 YhfZ C-terminal domain BED35_16985 PF00874 PRD domain BED35_16990 PF01168 Alanine racemase, N-terminal domain BED35_16995 PF02126 Phosphotriesterase family BED35_17000 PF10941 BED35_17000 BED35_17010 PF00543 Nitrogen regulatory protein P-II BED35_17015 PF00795 Carbon-nitrogen hydrolase BED35_17015 PF02540 NAD synthase BED35_17020 PF00072 Response regulator receiver domain BED35_17020 PF00158 Sigma-54 interaction domain BED35_17025 PF13942 BED35_17025 BED35_17030 PF00512 His Kinase A (phospho-acceptor) domain BED35_17030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_17040 PF02769 AIR synthase related protein, C-terminal domain BED35_17040 PF13507 CobB/CobQ-like glutamine amidotransferase domain BED35_17045 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_17045 PF01464 Transglycosylase SLT domain BED35_17050 PF14437 BED35_17050 BED35_17055 PF09925 BED35_17055 BED35_17060 PF12710 haloacid dehalogenase-like hydrolase BED35_17065 PF01380 SIS domain BED35_17070 PF01380 SIS domain BED35_17070 PF01418 Helix-turn-helix domain, rpiR family BED35_17075 PF12838 4Fe-4S dicluster domain BED35_17085 PF01648 4'-phosphopantetheinyl transferase superfamily BED35_17090 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BED35_17095 PF02565 Recombination protein O C terminal BED35_17095 PF11967 Recombination protein O N terminal BED35_17100 PF01926 50S ribosome-binding GTPase BED35_17100 PF07650 KH domain BED35_17105 PF00035 Double-stranded RNA binding motif BED35_17105 PF14622 Ribonuclease-III-like BED35_17110 PF00717 Peptidase S24-like BED35_17110 PF10502 Signal peptidase, peptidase S26 BED35_17115 PF00009 Elongation factor Tu GTP binding domain BED35_17115 PF00679 Elongation factor G C-terminus BED35_17115 PF03144 Elongation factor Tu domain 2 BED35_17115 PF06421 GTP-binding protein LepA C-terminus BED35_17125 PF04246 BED35_17125 BED35_17130 PF03888 MucB/RseB family BED35_17130 PF17188 BED35_17130 BED35_17135 PF03872 Anti sigma-E protein RseA, N-terminal domain BED35_17135 PF03873 Anti sigma-E protein RseA, C-terminal domain BED35_17140 PF04542 Sigma-70 region 2 BED35_17140 PF08281 Sigma-70, region 4 BED35_17145 PF00890 FAD binding domain BED35_17145 PF02910 Fumarate reductase flavoprotein C-term BED35_17150 PF05175 Methyltransferase small domain BED35_17155 PF00270 DEAD/DEAH box helicase BED35_17155 PF00271 Helicase conserved C-terminal domain BED35_17160 PF01548 BED35_17160 BED35_17160 PF02371 BED35_17160 BED35_17165 PF01548 BED35_17165 BED35_17165 PF02371 BED35_17165 BED35_17170 PF00023 Ankyrin repeat BED35_17170 PF12796 Ankyrin repeats (3 copies) BED35_17185 PF01228 Glycine radical BED35_17190 PF03167 Uracil DNA glycosylase superfamily BED35_17195 PF01025 GrpE BED35_17200 PF01513 ATP-NAD kinase BED35_17205 PF02463 RecF/RecN/SMC N terminal domain BED35_17210 PF04355 SmpA / OmlA family BED35_17215 PF03658 RnfH family Ubiquitin BED35_17220 PF03364 Polyketide cyclase / dehydrase and lipid transport BED35_17225 PF01668 SmpB protein BED35_17240 PF00916 BED35_17240 BED35_17240 PF01740 STAS domain BED35_17245 PF04794 YdjC-like protein BED35_17250 PF07883 Cupin domain BED35_17250 PF12833 Helix-turn-helix domain BED35_17255 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED35_17260 PF00232 Glycosyl hydrolase family 1 BED35_17265 PF02378 Phosphotransferase system, EIIC BED35_17270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED35_17280 PF01548 BED35_17280 BED35_17280 PF02371 BED35_17280 BED35_17285 PF00248 Aldo/keto reductase family BED35_17290 PF02537 BED35_17290 BED35_17295 PF02537 BED35_17295 BED35_17300 PF02254 TrkA-N domain BED35_17300 PF07885 Ion channel BED35_17305 PF06411 HdeA/HdeB family BED35_17310 PF03824 BED35_17310 BED35_17315 PF03253 Urea transporter BED35_17320 PF01774 UreD urease accessory protein BED35_17325 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED35_17330 PF01730 UreF BED35_17335 PF02814 UreE urease accessory protein, N-terminal domain BED35_17335 PF05194 UreE urease accessory protein, C-terminal domain BED35_17340 PF00449 Urease alpha-subunit, N-terminal domain BED35_17340 PF01979 Amidohydrolase family BED35_17345 PF00699 Urease beta subunit BED35_17350 PF00547 Urease, gamma subunit BED35_17355 PF00005 ABC transporter BED35_17360 PF00005 ABC transporter BED35_17365 PF00528 Binding-protein-dependent transport system inner membrane component BED35_17370 PF00528 Binding-protein-dependent transport system inner membrane component BED35_17375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_17390 PF00581 Rhodanese-like domain BED35_17400 PF12833 Helix-turn-helix domain BED35_17405 PF00313 'Cold-shock' DNA-binding domain BED35_17410 PF04899 BED35_17410 BED35_17420 PF09400 Protein of unknown function (DUF2002) BED35_17425 PF07690 Major Facilitator Superfamily BED35_17430 PF12833 Helix-turn-helix domain BED35_17435 PF03403 Platelet-activating factor acetylhydrolase, isoform II BED35_17440 PF06392 BED35_17440 BED35_17445 PF05957 BED35_17445 BED35_17450 PF00155 Aminotransferase class I and II BED35_17450 PF00392 Bacterial regulatory proteins, gntR family BED35_17455 PF02627 Carboxymuconolactone decarboxylase family BED35_17460 PF00462 Glutaredoxin BED35_17465 PF07972 NrdI Flavodoxin like BED35_17470 PF00317 Ribonucleotide reductase, all-alpha domain BED35_17470 PF02867 Ribonucleotide reductase, barrel domain BED35_17470 PF08343 Ribonucleotide reductase N-terminal BED35_17475 PF00268 Ribonucleotide reductase, small chain BED35_17480 PF00005 ABC transporter BED35_17480 PF00571 CBS domain BED35_17485 PF00528 Binding-protein-dependent transport system inner membrane component BED35_17490 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED35_17500 PF00929 Exonuclease BED35_17505 PF00075 RNase H BED35_17510 PF08241 Methyltransferase domain BED35_17515 PF00753 Metallo-beta-lactamase superfamily BED35_17515 PF16123 BED35_17515 BED35_17520 PF01464 Transglycosylase SLT domain BED35_17520 PF01476 LysM domain BED35_17525 PF01548 BED35_17525 BED35_17525 PF02371 BED35_17525 BED35_17530 PF03372 Endonuclease/Exonuclease/phosphatase family BED35_17535 PF07690 Major Facilitator Superfamily BED35_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_17540 PF03466 LysR substrate binding domain BED35_17545 PF00248 Aldo/keto reductase family BED35_17555 PF00872 BED35_17555 BED35_17595 PF00005 ABC transporter BED35_17595 PF09383 NIL domain BED35_17600 PF00528 Binding-protein-dependent transport system inner membrane component BED35_17605 PF03180 NLPA lipoprotein BED35_17610 PF16358 BED35_17610 BED35_17615 PF01980 Uncharacterised protein family UPF0066 BED35_17620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED35_17620 PF03129 Anticodon binding domain BED35_17620 PF04073 Aminoacyl-tRNA editing domain BED35_17625 PF04170 NlpE N-terminal domain BED35_17625 PF17185 BED35_17625 BED35_17630 PF00472 RF-1 domain BED35_17635 PF07152 YaeQ protein BED35_17645 PF07073 Modulator of Rho-dependent transcription termination (ROF) BED35_17650 PF00034 Cytochrome c BED35_17655 PF01171 PP-loop family BED35_17655 PF09179 TilS substrate binding domain BED35_17655 PF11734 TilS substrate C-terminal domain BED35_17660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED35_17665 PF01276 Orn/Lys/Arg decarboxylase, major domain BED35_17665 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED35_17665 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED35_17670 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BED35_17675 PF01336 OB-fold nucleic acid binding domain BED35_17675 PF02811 PHP domain BED35_17675 PF07733 Bacterial DNA polymerase III alpha subunit BED35_17675 PF14579 Helix-hairpin-helix motif BED35_17680 PF01351 Ribonuclease HII BED35_17685 PF02684 BED35_17685 BED35_17695 PF07977 FabA-like domain BED35_17700 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_17700 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BED35_17705 PF03938 Outer membrane protein (OmpH-like) BED35_17710 PF01103 Surface antigen BED35_17710 PF07244 Surface antigen variable number repeat BED35_17715 PF02163 Peptidase family M50 BED35_17715 PF13180 PDZ domain BED35_17720 PF01148 Cytidylyltransferase family BED35_17725 PF01255 Putative undecaprenyl diphosphate synthase BED35_17730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BED35_17730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BED35_17730 PF13288 DXP reductoisomerase C-terminal domain BED35_17735 PF01765 Ribosome recycling factor BED35_17740 PF00696 Amino acid kinase family BED35_17745 PF00889 Elongation factor TS BED35_17750 PF00318 Ribosomal protein S2 BED35_17760 PF01842 ACT domain BED35_17760 PF01909 Nucleotidyltransferase domain BED35_17760 PF01966 HD domain BED35_17760 PF08335 GlnD PII-uridylyltransferase BED35_17765 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_17765 PF14602 Hexapeptide repeat of succinyl-transferase BED35_17765 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BED35_17770 PF11944 BED35_17770 BED35_17775 PF00258 Flavodoxin BED35_17780 PF00849 RNA pseudouridylate synthase BED35_17785 PF04287 tRNA pseudouridine synthase C BED35_17790 PF07348 Syd protein (SUKH-2) BED35_17795 PF14489 QueF-like protein BED35_17795 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BED35_17800 PF03641 Possible lysine decarboxylase BED35_17800 PF11892 Domain of unknown function (DUF3412) BED35_17800 PF14793 Domain of unknown function (DUF4478) BED35_17805 PF01367 5'-3' exonuclease, C-terminal SAM fold BED35_17805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED35_17810 PF01548 BED35_17810 BED35_17810 PF02371 BED35_17810 BED35_17815 PF01728 FtsJ-like methyltransferase BED35_17820 PF04241 BED35_17820 BED35_17825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_17825 PF03466 LysR substrate binding domain BED35_17830 PF06004 Bacterial protein of unknown function (DUF903) BED35_17835 PF00266 Aminotransferase class-V BED35_17840 PF02657 Fe-S metabolism associated domain BED35_17845 PF00899 ThiF family BED35_17850 PF03562 MltA specific insert domain BED35_17850 PF06725 3D domain BED35_17870 PF01520 N-acetylmuramoyl-L-alanine amidase BED35_17870 PF11741 AMIN domain BED35_17875 PF00583 Acetyltransferase (GNAT) family BED35_17875 PF00696 Amino acid kinase family BED35_17880 PF13538 UvrD-like helicase C-terminal domain BED35_17880 PF13604 AAA domain BED35_17885 PF00580 UvrD/REP helicase N-terminal domain BED35_17885 PF12705 PD-(D/E)XK nuclease superfamily BED35_17885 PF13361 UvrD-like helicase C-terminal domain BED35_17890 PF00675 Insulinase (Peptidase family M16) BED35_17890 PF05193 Peptidase M16 inactive domain BED35_17890 PF16187 BED35_17890 BED35_17895 PF04257 Exodeoxyribonuclease V, gamma subunit BED35_17900 PF12528 BED35_17900 BED35_17905 PF10713 BED35_17905 BED35_17910 PF07963 Prokaryotic N-terminal methylation motif BED35_17915 PF07963 Prokaryotic N-terminal methylation motif BED35_17920 PF00303 Thymidylate synthase BED35_17925 PF01790 BED35_17925 BED35_17930 PF00391 PEP-utilising enzyme, mobile domain BED35_17930 PF01590 GAF domain BED35_17930 PF02896 PEP-utilising enzyme, TIM barrel domain BED35_17930 PF05524 PEP-utilising enzyme, N-terminal BED35_17945 PF02976 DNA mismatch repair enzyme MutH BED35_17950 PF03741 BED35_17950 BED35_17955 PF00248 Aldo/keto reductase family BED35_17965 PF00501 AMP-binding enzyme BED35_17965 PF01553 Acyltransferase BED35_17965 PF13193 AMP-binding enzyme C-terminal domain BED35_17970 PF00384 Molybdopterin oxidoreductase BED35_17970 PF01568 Molydopterin dinucleotide binding domain BED35_17975 PF00356 Bacterial regulatory proteins, lacI family BED35_17975 PF13377 Periplasmic binding protein-like domain BED35_17980 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BED35_17980 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED35_17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_17985 PF03466 LysR substrate binding domain BED35_17990 PF07690 Major Facilitator Superfamily BED35_18000 PF00753 Metallo-beta-lactamase superfamily BED35_18020 PF00486 Transcriptional regulatory protein, C terminal BED35_18025 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) BED35_18040 PF05134 Type II secretion system (T2SS), protein L BED35_18045 PF03934 Type II secretion system (T2SS), protein K BED35_18050 PF11612 Type II secretion system (T2SS), protein J BED35_18055 PF02501 Type II secretion system (T2SS), protein I BED35_18060 PF07963 Prokaryotic N-terminal methylation motif BED35_18060 PF08334 Type II secretion system (T2SS), protein G BED35_18070 PF00437 Type II/IV secretion system protein BED35_18075 PF00263 BED35_18075 BED35_18075 PF03958 Bacterial type II/III secretion system short domain BED35_18080 PF11356 Type IV pilus biogenesis BED35_18090 PF00484 Carbonic anhydrase BED35_18095 PF01638 HxlR-like helix-turn-helix BED35_18100 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_18105 PF13591 MerR HTH family regulatory protein BED35_18110 PF00226 DnaJ domain BED35_18110 PF01556 DnaJ C terminal domain BED35_18115 PF01548 BED35_18115 BED35_18115 PF02371 BED35_18115 BED35_18120 PF00990 GGDEF domain BED35_18120 PF08448 PAS fold BED35_18125 PF13474 SnoaL-like domain BED35_18130 PF02661 Fic/DOC family BED35_18135 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED35_18140 PF00872 BED35_18140 BED35_18145 PF15731 BED35_18145 BED35_18150 PF15723 BED35_18150 BED35_18155 PF01381 Helix-turn-helix BED35_18160 PF05016 Plasmid stabilisation system protein BED35_18165 PF13358 DDE superfamily endonuclease BED35_18165 PF13384 Homeodomain-like domain BED35_18170 PF00589 Phage integrase family BED35_18170 PF02899 Phage integrase, N-terminal SAM-like domain BED35_18200 PF03864 Phage major capsid protein E BED35_18210 PF13358 DDE superfamily endonuclease BED35_18210 PF13384 Homeodomain-like domain BED35_18230 PF04851 Type III restriction enzyme, res subunit BED35_18245 PF00589 Phage integrase family BED35_18255 PF00152 tRNA synthetases class II (D, K and N) BED35_18255 PF01336 OB-fold nucleic acid binding domain BED35_18260 PF00472 RF-1 domain BED35_18260 PF03462 PCRF domain BED35_18265 PF01368 DHH family BED35_18265 PF02272 DHHA1 domain BED35_18270 PF10411 Disulfide bond isomerase protein N-terminus BED35_18270 PF13098 Thioredoxin-like domain BED35_18275 PF00589 Phage integrase family BED35_18275 PF02899 Phage integrase, N-terminal SAM-like domain BED35_18280 PF00258 Flavodoxin BED35_18285 PF06123 BED35_18285 BED35_18290 PF00512 His Kinase A (phospho-acceptor) domain BED35_18290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_18290 PF14827 Sensory domain of two-component sensor kinase BED35_18295 PF00072 Response regulator receiver domain BED35_18295 PF00486 Transcriptional regulatory protein, C terminal BED35_18300 PF07254 BED35_18300 BED35_18305 PF03937 Flavinator of succinate dehydrogenase BED35_18310 PF01571 Aminomethyltransferase folate-binding domain BED35_18315 PF01548 BED35_18315 BED35_18315 PF02371 BED35_18315 BED35_18320 PF03006 BED35_18320 BED35_18325 PF13023 HD domain BED35_18330 PF13561 Enoyl-(Acyl carrier protein) reductase BED35_18335 PF13924 BED35_18335 BED35_18340 PF02347 Glycine cleavage system P-protein BED35_18345 PF01597 Glycine cleavage H-protein BED35_18350 PF01571 Aminomethyltransferase folate-binding domain BED35_18350 PF08669 Glycine cleavage T-protein C-terminal barrel domain BED35_18355 PF01494 FAD binding domain BED35_18360 PF01494 FAD binding domain BED35_18365 PF00557 Metallopeptidase family M24 BED35_18365 PF05195 Aminopeptidase P, N-terminal domain BED35_18370 PF03695 Uncharacterised protein family (UPF0149) BED35_18375 PF05164 Cell division protein ZapA BED35_18385 PF01812 5-formyltetrahydrofolate cyclo-ligase family BED35_18390 PF00113 Enolase, C-terminal TIM barrel domain BED35_18390 PF03952 Enolase, N-terminal domain BED35_18395 PF00117 Glutamine amidotransferase class-I BED35_18395 PF06418 CTP synthase N-terminus BED35_18400 PF03819 MazG nucleotide pyrophosphohydrolase domain BED35_18405 PF02824 TGS domain BED35_18405 PF04607 Region found in RelA / SpoT proteins BED35_18405 PF13291 ACT domain BED35_18405 PF13328 HD domain BED35_18410 PF01938 TRAM domain BED35_18410 PF05958 tRNA (Uracil-5-)-methyltransferase BED35_18415 PF00072 Response regulator receiver domain BED35_18415 PF00512 His Kinase A (phospho-acceptor) domain BED35_18415 PF01627 Hpt domain BED35_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_18415 PF09984 BED35_18415 BED35_18420 PF00595 PDZ domain (Also known as DHR or GLGF) BED35_18420 PF13180 PDZ domain BED35_18420 PF13365 Trypsin-like peptidase domain BED35_18425 PF01966 HD domain BED35_18425 PF13286 Phosphohydrolase-associated domain BED35_18430 PF01048 Phosphorylase superfamily BED35_18435 PF01497 Periplasmic binding protein BED35_18440 PF03458 BED35_18440 BED35_18445 PF01521 Iron-sulphur cluster biosynthesis BED35_18450 PF00654 Voltage gated chloride channel BED35_18455 PF00202 Aminotransferase class-III BED35_18460 PF07690 Major Facilitator Superfamily BED35_18465 PF01032 FecCD transport family BED35_18470 PF01497 Periplasmic binding protein BED35_18475 PF00005 ABC transporter BED35_18480 PF00905 Penicillin binding protein transpeptidase domain BED35_18480 PF00912 Transglycosylase BED35_18480 PF14812 BED35_18480 BED35_18480 PF14814 Bifunctional transglycosylase second domain BED35_18485 PF00270 DEAD/DEAH box helicase BED35_18485 PF00271 Helicase conserved C-terminal domain BED35_18485 PF04408 Helicase associated domain (HA2) BED35_18485 PF08482 BED35_18485 BED35_18490 PF13563 2'-5' RNA ligase superfamily BED35_18495 PF03749 Sugar fermentation stimulation protein BED35_18500 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED35_18505 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED35_18510 PF01743 Poly A polymerase head domain BED35_18510 PF12626 Polymerase A arginine-rich C-terminus BED35_18510 PF12627 Probable RNA and SrmB- binding site of polymerase A BED35_18515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BED35_18520 PF02548 Ketopantoate hydroxymethyltransferase BED35_18525 PF02569 Pantoate-beta-alanine ligase BED35_18530 PF02261 Aspartate decarboxylase BED35_18535 PF01522 Polysaccharide deacetylase BED35_18540 PF01061 BED35_18540 BED35_18545 PF00005 ABC transporter BED35_18550 PF00484 Carbonic anhydrase BED35_18555 PF00156 Phosphoribosyl transferase domain BED35_18560 PF00394 Multicopper oxidase BED35_18560 PF07731 Multicopper oxidase BED35_18560 PF07732 Multicopper oxidase BED35_18560 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED35_18565 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) BED35_18570 PF01564 Spermine/spermidine synthase BED35_18570 PF17284 BED35_18570 BED35_18575 PF02675 S-adenosylmethionine decarboxylase BED35_18585 PF00892 EamA-like transporter family BED35_18590 PF06062 BED35_18590 BED35_18600 PF00593 TonB dependent receptor BED35_18600 PF07715 TonB-dependent Receptor Plug Domain BED35_18615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED35_18615 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED35_18620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED35_18620 PF00364 Biotin-requiring enzyme BED35_18620 PF02817 e3 binding domain BED35_18625 PF00456 Transketolase, thiamine diphosphate binding domain BED35_18630 PF00392 Bacterial regulatory proteins, gntR family BED35_18630 PF07729 FCD domain BED35_18635 PF00324 Amino acid permease BED35_18640 PF17113 BED35_18640 BED35_18645 PF01510 N-acetylmuramoyl-L-alanine amidase BED35_18650 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BED35_18650 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BED35_18655 PF00114 Pilin (bacterial filament) BED35_18655 PF07963 Prokaryotic N-terminal methylation motif BED35_18660 PF00437 Type II/IV secretion system protein BED35_18660 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BED35_18665 PF00482 Type II secretion system (T2SS), protein F BED35_18670 PF00478 IMP dehydrogenase / GMP reductase domain BED35_18675 PF01121 Dephospho-CoA kinase BED35_18680 PF07072 Protein of unknown function (DUF1342) BED35_18685 PF03884 Domain of unknown function (DUF329) BED35_18690 PF00293 NUDIX domain BED35_18695 PF01043 SecA preprotein cross-linking domain BED35_18695 PF02810 SEC-C motif BED35_18695 PF07516 SecA Wing and Scaffold domain BED35_18695 PF07517 SecA DEAD-like domain BED35_18700 PF06558 BED35_18700 BED35_18705 PF05258 BED35_18705 BED35_18710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BED35_18715 PF00091 Tubulin/FtsZ family, GTPase domain BED35_18715 PF12327 FtsZ family, C-terminal domain BED35_18720 PF02491 SHS2 domain inserted in FTSA BED35_18720 PF14450 Cell division protein FtsA BED35_18725 PF03799 Cell division protein FtsQ BED35_18725 PF08478 POTRA domain, FtsQ-type BED35_18730 PF01820 D-ala D-ala ligase N-terminus BED35_18730 PF07478 D-ala D-ala ligase C-terminus BED35_18735 PF01225 Mur ligase family, catalytic domain BED35_18735 PF02875 Mur ligase family, glutamate ligase domain BED35_18735 PF08245 Mur ligase middle domain BED35_18740 PF03033 Glycosyltransferase family 28 N-terminal domain BED35_18740 PF04101 Glycosyltransferase family 28 C-terminal domain BED35_18745 PF01098 BED35_18745 BED35_18750 PF02875 Mur ligase family, glutamate ligase domain BED35_18750 PF08245 Mur ligase middle domain BED35_18755 PF00953 Glycosyl transferase family 4 BED35_18755 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BED35_18760 PF01225 Mur ligase family, catalytic domain BED35_18760 PF02875 Mur ligase family, glutamate ligase domain BED35_18760 PF08245 Mur ligase middle domain BED35_18765 PF01225 Mur ligase family, catalytic domain BED35_18765 PF02875 Mur ligase family, glutamate ligase domain BED35_18765 PF08245 Mur ligase middle domain BED35_18770 PF00905 Penicillin binding protein transpeptidase domain BED35_18770 PF03717 Penicillin-binding Protein dimerisation domain BED35_18780 PF01795 MraW methylase family BED35_18785 PF02381 MraZ protein BED35_18790 PF06610 BED35_18790 BED35_18795 PF00356 Bacterial regulatory proteins, lacI family BED35_18795 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED35_18800 PF01842 ACT domain BED35_18800 PF10369 Small subunit of acetolactate synthase BED35_18805 PF00205 Thiamine pyrophosphate enzyme, central domain BED35_18805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED35_18805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED35_18810 PF00501 AMP-binding enzyme BED35_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_18815 PF03466 LysR substrate binding domain BED35_18820 PF00682 HMGL-like BED35_18820 PF08502 LeuA allosteric (dimerisation) domain BED35_18825 PF00180 Isocitrate/isopropylmalate dehydrogenase BED35_18830 PF00330 Aconitase family (aconitate hydratase) BED35_18835 PF00694 Aconitase C-terminal domain BED35_18850 PF07690 Major Facilitator Superfamily BED35_18855 PF01228 Glycine radical BED35_18855 PF02901 Pyruvate formate lyase BED35_18865 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_18865 PF12793 BED35_18865 BED35_18875 PF13988 BED35_18875 BED35_18880 PF01547 Bacterial extracellular solute-binding protein BED35_18885 PF00528 Binding-protein-dependent transport system inner membrane component BED35_18890 PF00005 ABC transporter BED35_18895 PF09335 BED35_18895 BED35_18900 PF00136 DNA polymerase family B BED35_18900 PF03104 DNA polymerase family B, exonuclease domain BED35_18905 PF00176 SNF2 family N-terminal domain BED35_18905 PF00271 Helicase conserved C-terminal domain BED35_18905 PF12137 RNA polymerase recycling family C-terminal BED35_18910 PF02369 Bacterial Ig-like domain (group 1) BED35_18910 PF09134 Invasin, domain 3 BED35_18910 PF11924 Protein of unknown function (DUF3442) BED35_18915 PF00849 RNA pseudouridylate synthase BED35_18920 PF00226 DnaJ domain BED35_18920 PF05099 Tellurite resistance protein TerB BED35_18925 PF03968 OstA-like protein BED35_18925 PF04453 Organic solvent tolerance protein BED35_18930 PF00639 PPIC-type PPIASE domain BED35_18930 PF09312 SurA N-terminal domain BED35_18935 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BED35_18940 PF00398 Ribosomal RNA adenine dimethylase BED35_18945 PF04379 Protein of unknown function (DUF525) BED35_18950 PF00149 Calcineurin-like phosphoesterase BED35_18955 PF00186 Dihydrofolate reductase BED35_18960 PF12821 BED35_18960 BED35_18965 PF06738 BED35_18965 BED35_18970 PF01810 BED35_18970 BED35_18975 PF02142 MGS-like domain BED35_18975 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED35_18975 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED35_18980 PF00117 Glutamine amidotransferase class-I BED35_18980 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BED35_18985 PF01113 Dihydrodipicolinate reductase, N-terminus BED35_18985 PF05173 Dihydrodipicolinate reductase, C-terminus BED35_18990 PF02401 LytB protein BED35_18995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED35_19000 PF01252 BED35_19000 BED35_19005 PF00133 tRNA synthetases class I (I, L, M and V) BED35_19005 PF06827 Zinc finger found in FPG and IleRS BED35_19005 PF08264 Anticodon-binding domain of tRNA BED35_19010 PF01687 Riboflavin kinase BED35_19010 PF06574 FAD synthetase BED35_19020 PF01649 Ribosomal protein S20 BED35_19025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_19025 PF03466 LysR substrate binding domain BED35_19030 PF06965 Na+/H+ antiporter 1 BED35_19035 PF00226 DnaJ domain BED35_19035 PF00684 DnaJ central domain BED35_19035 PF01556 DnaJ C terminal domain BED35_19040 PF00012 Hsp70 protein BED35_19045 PF01184 BED35_19045 BED35_19050 PF03995 Peptidase inhibitor family I36 BED35_19055 PF07690 Major Facilitator Superfamily BED35_19060 PF00994 Probable molybdopterin binding domain BED35_19065 PF00923 Transaldolase BED35_19070 PF03883 BED35_19070 BED35_19075 PF01548 BED35_19075 BED35_19075 PF02371 BED35_19075 BED35_19080 PF00291 Pyridoxal-phosphate dependent enzyme BED35_19080 PF14821 Threonine synthase N terminus BED35_19085 PF00288 GHMP kinases N terminal domain BED35_19085 PF08544 GHMP kinases C terminal BED35_19090 PF00696 Amino acid kinase family BED35_19090 PF00742 Homoserine dehydrogenase BED35_19090 PF01842 ACT domain BED35_19090 PF03447 Homoserine dehydrogenase, NAD binding domain BED35_19090 PF13840 ACT domain BED35_19100 PF00072 Response regulator receiver domain BED35_19100 PF00486 Transcriptional regulatory protein, C terminal BED35_19105 PF05981 BED35_19105 BED35_19110 PF06445 GyrI-like small molecule binding domain BED35_19110 PF12833 Helix-turn-helix domain BED35_19115 PF00300 Histidine phosphatase superfamily (branch 1) BED35_19125 PF01371 Trp repressor protein BED35_19130 PF01464 Transglycosylase SLT domain BED35_19130 PF14718 Soluble lytic murein transglycosylase L domain BED35_19135 PF00122 E1-E2 ATPase BED35_19135 PF00689 Cation transporting ATPase, C-terminus BED35_19135 PF00690 Cation transporter/ATPase, N-terminus BED35_19135 PF00702 haloacid dehalogenase-like hydrolase BED35_19140 PF13689 BED35_19140 BED35_19145 PF00990 GGDEF domain BED35_19145 PF17152 BED35_19145 BED35_19150 PF00691 OmpA family BED35_19155 PF00005 ABC transporter BED35_19155 PF12848 ABC transporter BED35_19160 PF02661 Fic/DOC family BED35_19160 PF13776 BED35_19160 BED35_19165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_19165 PF03466 LysR substrate binding domain BED35_19170 PF08240 Alcohol dehydrogenase GroES-like domain BED35_19170 PF13602 Zinc-binding dehydrogenase BED35_19185 PF12710 haloacid dehalogenase-like hydrolase BED35_19190 PF10144 BED35_19190 BED35_19195 PF01048 Phosphorylase superfamily BED35_19200 PF01676 Metalloenzyme superfamily BED35_19205 PF00591 Glycosyl transferase family, a/b domain BED35_19205 PF02885 Glycosyl transferase family, helical bundle domain BED35_19205 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BED35_19210 PF01791 DeoC/LacD family aldolase BED35_19215 PF01773 Na+ dependent nucleoside transporter N-terminus BED35_19215 PF07662 Na+ dependent nucleoside transporter C-terminus BED35_19215 PF07670 Nucleoside recognition BED35_19220 PF01026 TatD related DNase BED35_19225 PF01734 Patatin-like phospholipase BED35_19230 PF07043 BED35_19230 BED35_19235 PF04972 BON domain BED35_19240 PF00009 Elongation factor Tu GTP binding domain BED35_19240 PF03144 Elongation factor Tu domain 2 BED35_19240 PF16658 BED35_19240 BED35_19245 PF00583 Acetyltransferase (GNAT) family BED35_19250 PF03603 DNA polymerase III psi subunit BED35_19255 PF05175 Methyltransferase small domain BED35_19255 PF08468 Methyltransferase small domain N-terminal BED35_19260 PF00248 Aldo/keto reductase family BED35_19275 PF07256 BED35_19275 BED35_19280 PF00990 GGDEF domain BED35_19285 PF00593 TonB dependent receptor BED35_19285 PF07715 TonB-dependent Receptor Plug Domain BED35_19290 PF01497 Periplasmic binding protein BED35_19295 PF00294 pfkB family carbohydrate kinase BED35_19300 PF02264 LamB porin BED35_19300 PF11471 BED35_19300 BED35_19305 PF00367 phosphotransferase system, EIIB BED35_19305 PF02378 Phosphotransferase system, EIIC BED35_19310 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED35_19310 PF08244 Glycosyl hydrolases family 32 C terminal BED35_19315 PF00356 Bacterial regulatory proteins, lacI family BED35_19315 PF13377 Periplasmic binding protein-like domain BED35_19320 PF00158 Sigma-54 interaction domain BED35_19320 PF00989 PAS fold BED35_19320 PF02954 Bacterial regulatory protein, Fis family BED35_19325 PF01095 Pectinesterase BED35_19330 PF10014 2OG-Fe dioxygenase BED35_19335 PF07690 Major Facilitator Superfamily BED35_19350 PF13358 DDE superfamily endonuclease BED35_19350 PF13384 Homeodomain-like domain BED35_19355 PF02543 Carbamoyltransferase BED35_19355 PF16861 BED35_19355 BED35_19360 PF00534 Glycosyl transferases group 1 BED35_19370 PF02734 DAK2 domain BED35_19375 PF02733 Dak1 domain BED35_19380 PF00465 Iron-containing alcohol dehydrogenase BED35_19385 PF00873 AcrB/AcrD/AcrF family BED35_19390 PF16576 BED35_19390 BED35_19395 PF02274 Amidinotransferase BED35_19405 PF04932 BED35_19405 BED35_19410 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED35_19415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED35_19415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED35_19420 PF04198 Putative sugar-binding domain BED35_19425 PF00005 ABC transporter BED35_19430 PF02653 BED35_19430 BED35_19435 PF02653 BED35_19435 BED35_19440 PF13407 Periplasmic binding protein domain BED35_19445 PF01791 DeoC/LacD family aldolase BED35_19450 PF03992 Antibiotic biosynthesis monooxygenase BED35_19460 PF10696 BED35_19460 BED35_19465 PF00872 BED35_19465 BED35_19470 PF06551 BED35_19470 BED35_19475 PF01527 Transposase BED35_19495 PF03739 BED35_19495 BED35_19500 PF03739 BED35_19500 BED35_19505 PF00883 Cytosol aminopeptidase family, catalytic domain BED35_19505 PF02789 Cytosol aminopeptidase family, N-terminal domain BED35_19510 PF04364 DNA polymerase III chi subunit, HolC BED35_19515 PF00133 tRNA synthetases class I (I, L, M and V) BED35_19515 PF08264 Anticodon-binding domain of tRNA BED35_19515 PF10458 Valyl tRNA synthetase tRNA binding arm BED35_19520 PF00583 Acetyltransferase (GNAT) family BED35_19525 PF06877 Regulator of ribonuclease activity B BED35_19530 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED35_19530 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED35_19535 PF04074 Domain of unknown function (DUF386) BED35_19540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED35_19545 PF00528 Binding-protein-dependent transport system inner membrane component BED35_19550 PF00528 Binding-protein-dependent transport system inner membrane component BED35_19550 PF12911 BED35_19550 BED35_19555 PF00005 ABC transporter BED35_19560 PF00005 ABC transporter BED35_19565 PF03466 LysR substrate binding domain BED35_19575 PF13353 4Fe-4S single cluster domain BED35_19580 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED35_19580 PF08479 POTRA domain, ShlB-type BED35_19585 PF15984 BED35_19585 BED35_19590 PF00392 Bacterial regulatory proteins, gntR family BED35_19590 PF07702 UTRA domain BED35_19595 PF06754 BED35_19595 BED35_19600 PF05845 Bacterial phosphonate metabolism protein (PhnH) BED35_19605 PF05861 BED35_19605 BED35_19610 PF06007 BED35_19610 BED35_19615 PF00005 ABC transporter BED35_19620 PF00005 ABC transporter BED35_19625 PF07969 Amidohydrolase family BED35_19635 PF12706 Beta-lactamase superfamily domain BED35_19645 PF05016 Plasmid stabilisation system protein BED35_19650 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED35_19660 PF05426 Alginate lyase BED35_19665 PF00005 ABC transporter BED35_19665 PF08402 TOBE domain BED35_19670 PF00528 Binding-protein-dependent transport system inner membrane component BED35_19675 PF00528 Binding-protein-dependent transport system inner membrane component BED35_19680 PF01547 Bacterial extracellular solute-binding protein BED35_19685 PF05426 Alginate lyase BED35_19690 PF07940 Heparinase II/III-like protein BED35_19695 PF01276 Orn/Lys/Arg decarboxylase, major domain BED35_19695 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED35_19695 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED35_19700 PF13520 Amino acid permease BED35_19710 PF00583 Acetyltransferase (GNAT) family BED35_19715 PF02036 SCP-2 sterol transfer family BED35_19720 PF01136 BED35_19720 BED35_19725 PF01136 BED35_19725 BED35_19730 PF03313 BED35_19730 BED35_19740 PF02321 Outer membrane efflux protein BED35_19740 PF13533 Biotin-lipoyl like BED35_19745 PF00296 Luciferase-like monooxygenase BED35_19755 PF00270 DEAD/DEAH box helicase BED35_19755 PF00271 Helicase conserved C-terminal domain BED35_19755 PF03880 DbpA RNA binding domain BED35_19755 PF12343 BED35_19755 BED35_19760 PF07719 Tetratricopeptide repeat BED35_19760 PF13181 Tetratricopeptide repeat BED35_19765 PF00013 KH domain BED35_19765 PF00575 S1 RNA binding domain BED35_19765 PF01138 3' exoribonuclease family, domain 1 BED35_19765 PF03725 3' exoribonuclease family, domain 2 BED35_19765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BED35_19770 PF00312 Ribosomal protein S15 BED35_19775 PF01509 TruB family pseudouridylate synthase (N terminal domain) BED35_19775 PF09157 Pseudouridine synthase II TruB, C-terminal BED35_19775 PF16198 BED35_19775 BED35_19780 PF02033 Ribosome-binding factor A BED35_19785 PF00009 Elongation factor Tu GTP binding domain BED35_19785 PF03144 Elongation factor Tu domain 2 BED35_19785 PF04760 Translation initiation factor IF-2, N-terminal region BED35_19785 PF08364 BED35_19785 BED35_19785 PF11987 Translation-initiation factor 2 BED35_19790 PF08529 NusA N-terminal domain BED35_19790 PF13184 NusA-like KH domain BED35_19790 PF14520 Helix-hairpin-helix domain BED35_19795 PF02576 Uncharacterised BCR, YhbC family COG0779 BED35_19795 PF17384 BED35_19795 BED35_19810 PF03840 Preprotein translocase SecG subunit BED35_19815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED35_19815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED35_19815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED35_19815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED35_19820 PF00809 Pterin binding enzyme BED35_19825 PF00004 ATPase family associated with various cellular activities (AAA) BED35_19825 PF01434 Peptidase family M41 BED35_19825 PF06480 FtsH Extracellular BED35_19830 PF01728 FtsJ-like methyltransferase BED35_19835 PF01985 CRS1 / YhbY (CRM) domain BED35_19840 PF01272 Transcription elongation factor, GreA/GreB, C-term BED35_19840 PF03449 Transcription elongation factor, N-terminal BED35_19845 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BED35_19850 PF00072 Response regulator receiver domain BED35_19850 PF00486 Transcriptional regulatory protein, C terminal BED35_19855 PF00512 His Kinase A (phospho-acceptor) domain BED35_19855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_19860 PF01018 GTP1/OBG BED35_19860 PF01926 50S ribosome-binding GTPase BED35_19865 PF00892 EamA-like transporter family BED35_19870 PF01016 Ribosomal L27 protein BED35_19875 PF00829 Ribosomal prokaryotic L21 protein BED35_19880 PF00348 Polyprenyl synthetase BED35_19885 PF02316 Mu DNA-binding domain BED35_19890 PF13693 Winged helix-turn-helix DNA-binding BED35_19895 PF00056 lactate/malate dehydrogenase, NAD binding domain BED35_19895 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BED35_19900 PF01316 Arginine repressor, DNA binding domain BED35_19900 PF02863 Arginine repressor, C-terminal domain BED35_19905 PF07338 Protein of unknown function (DUF1471) BED35_19910 PF01225 Mur ligase family, catalytic domain BED35_19910 PF02875 Mur ligase family, glutamate ligase domain BED35_19910 PF08245 Mur ligase middle domain BED35_19915 PF00316 Fructose-1-6-bisphosphatase BED35_19920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_19920 PF02203 Tar ligand binding domain homologue BED35_19925 PF00719 Inorganic pyrophosphatase BED35_19930 PF06094 AIG2-like family BED35_19935 PF04357 BED35_19935 BED35_19940 PF01103 Surface antigen BED35_19940 PF07244 Surface antigen variable number repeat BED35_19940 PF17243 BED35_19940 BED35_19945 PF01625 Peptide methionine sulfoxide reductase BED35_19950 PF00571 CBS domain BED35_19950 PF01595 BED35_19950 BED35_19950 PF03471 Transporter associated domain BED35_19955 PF06526 Protein of unknown function (DUF1107) BED35_19960 PF09695 BED35_19960 BED35_19965 PF00459 Inositol monophosphatase family BED35_19970 PF00149 Calcineurin-like phosphoesterase BED35_19970 PF02872 5'-nucleotidase, C-terminal domain BED35_19980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED35_19980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED35_19985 PF04225 Opacity-associated protein A LysM-like domain BED35_19985 PF08525 BED35_19985 BED35_19990 PF12582 BED35_19990 BED35_19995 PF01281 Ribosomal protein L9, N-terminal domain BED35_19995 PF03948 Ribosomal protein L9, C-terminal domain BED35_20000 PF01084 Ribosomal protein S18 BED35_20005 PF00436 Single-strand binding protein family BED35_20010 PF01250 Ribosomal protein S6 BED35_20015 PF07338 Protein of unknown function (DUF1471) BED35_20020 PF00326 Prolyl oligopeptidase family BED35_20025 PF07338 Protein of unknown function (DUF1471) BED35_20030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED35_20035 PF01548 BED35_20035 BED35_20035 PF02371 BED35_20035 BED35_20040 PF00588 SpoU rRNA Methylase family BED35_20040 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED35_20045 PF00575 S1 RNA binding domain BED35_20045 PF00773 RNB domain BED35_20045 PF08206 Ribonuclease B OB domain BED35_20045 PF08461 Ribonuclease R winged-helix domain BED35_20050 PF02082 Transcriptional regulator BED35_20055 PF00709 Adenylosuccinate synthetase BED35_20060 PF09838 BED35_20060 BED35_20065 PF01145 SPFH domain / Band 7 family BED35_20070 PF01145 SPFH domain / Band 7 family BED35_20070 PF12221 BED35_20070 BED35_20075 PF01926 50S ribosome-binding GTPase BED35_20075 PF13167 BED35_20075 BED35_20075 PF16360 BED35_20075 BED35_20080 PF17209 BED35_20080 BED35_20085 PF01715 IPP transferase BED35_20090 PF01119 DNA mismatch repair protein, C-terminal domain BED35_20090 PF08676 MutL C terminal dimerisation domain BED35_20090 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_20095 PF01476 LysM domain BED35_20095 PF01520 N-acetylmuramoyl-L-alanine amidase BED35_20095 PF11741 AMIN domain BED35_20100 PF02367 Uncharacterised P-loop hydrolase UPF0079 BED35_20105 PF01256 Carbohydrate kinase BED35_20105 PF03853 YjeF-related protein N-terminus BED35_20110 PF08331 BED35_20110 BED35_20110 PF13484 BED35_20110 BED35_20125 PF00929 Exonuclease BED35_20130 PF03193 Protein of unknown function, DUF258 BED35_20135 PF02666 BED35_20135 BED35_20140 PF00924 Mechanosensitive ion channel BED35_20140 PF12794 BED35_20140 BED35_20140 PF12795 BED35_20140 BED35_20145 PF00152 tRNA synthetases class II (D, K and N) BED35_20150 PF00890 FAD binding domain BED35_20150 PF02910 Fumarate reductase flavoprotein C-term BED35_20155 PF13085 2Fe-2S iron-sulfur cluster binding domain BED35_20155 PF13183 4Fe-4S dicluster domain BED35_20160 PF02300 Fumarate reductase subunit C BED35_20165 PF02313 Fumarate reductase subunit D BED35_20170 PF08212 Lipocalin-like domain BED35_20175 PF00893 Small Multidrug Resistance protein BED35_20180 PF08085 BED35_20180 BED35_20185 PF01132 Elongation factor P (EF-P) OB domain BED35_20185 PF08207 Elongation factor P (EF-P) KOW-like domain BED35_20185 PF09285 Elongation factor P, C-terminal BED35_20190 PF04055 Radical SAM superfamily BED35_20190 PF13353 4Fe-4S single cluster domain BED35_20195 PF13698 BED35_20195 BED35_20205 PF00118 TCP-1/cpn60 chaperonin family BED35_20210 PF00166 Chaperonin 10 Kd subunit BED35_20215 PF04186 BED35_20215 BED35_20220 PF00206 Lyase BED35_20220 PF10415 Fumarase C C-terminus BED35_20225 PF03605 BED35_20225 BED35_20230 PF03091 CutA1 divalent ion tolerance protein BED35_20235 PF02683 BED35_20235 BED35_20235 PF11412 Disulphide bond corrector protein DsbC BED35_20235 PF13899 Thioredoxin-like BED35_20240 PF02595 Glycerate kinase family BED35_20245 PF00440 Bacterial regulatory proteins, tetR family BED35_20255 PF01228 Glycine radical BED35_20255 PF02901 Pyruvate formate lyase BED35_20260 PF00871 Acetokinase family BED35_20265 PF01490 BED35_20265 BED35_20270 PF00291 Pyridoxal-phosphate dependent enzyme BED35_20275 PF04055 Radical SAM superfamily BED35_20280 PF06228 Haem utilisation ChuX/HutX BED35_20285 PF13460 NADH(P)-binding BED35_20290 PF10636 Hemin uptake protein hemP BED35_20295 PF00593 TonB dependent receptor BED35_20295 PF07715 TonB-dependent Receptor Plug Domain BED35_20300 PF05171 Haemin-degrading HemS BED35_20305 PF01497 Periplasmic binding protein BED35_20310 PF01032 FecCD transport family BED35_20315 PF00005 ABC transporter BED35_20325 PF06568 BED35_20325 BED35_20330 PF00593 TonB dependent receptor BED35_20330 PF07715 TonB-dependent Receptor Plug Domain BED35_20345 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED35_20355 PF00005 ABC transporter BED35_20355 PF06472 BED35_20355 BED35_20360 PF07660 Secretin and TonB N terminus short domain BED35_20360 PF07715 TonB-dependent Receptor Plug Domain BED35_20365 PF04773 FecR protein BED35_20365 PF16220 BED35_20365 BED35_20370 PF04542 Sigma-70 region 2 BED35_20370 PF08281 Sigma-70, region 4 BED35_20380 PF01206 Sulfurtransferase TusA BED35_20385 PF04143 BED35_20385 BED35_20390 PF01312 FlhB HrpN YscU SpaS Family BED35_20395 PF01311 BED35_20395 BED35_20400 PF01313 BED35_20400 BED35_20405 PF00813 BED35_20405 BED35_20410 PF01052 Surface presentation of antigens (SPOA) BED35_20410 PF06622 BED35_20410 BED35_20425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_20430 PF00771 FHIPEP family BED35_20440 PF07201 HrpJ-like domain BED35_20440 PF09059 TyeA BED35_20450 PF13327 BED35_20450 BED35_20455 PF01514 Secretory protein of YscJ/FliF family BED35_20465 PF06287 BED35_20465 BED35_20470 PF09392 Type III secretion needle MxiH like BED35_20475 PF12833 Helix-turn-helix domain BED35_20490 PF09621 BED35_20490 BED35_20495 PF05802 BED35_20495 BED35_20500 PF04888 BED35_20500 BED35_20510 PF03433 EspA-like secreted protein BED35_20520 PF08988 Protein of unknown function (DUF1895) BED35_20525 PF16693 BED35_20525 BED35_20530 PF00263 BED35_20530 BED35_20530 PF03958 Bacterial type II/III secretion system short domain BED35_20545 PF00072 Response regulator receiver domain BED35_20545 PF00196 Bacterial regulatory proteins, luxR family BED35_20550 PF00375 Sodium:dicarboxylate symporter family BED35_20555 PF00501 AMP-binding enzyme BED35_20555 PF13193 AMP-binding enzyme C-terminal domain BED35_20555 PF16177 BED35_20555 BED35_20560 PF04341 BED35_20560 BED35_20565 PF00474 Sodium:solute symporter family BED35_20610 PF01808 AICARFT/IMPCHase bienzyme BED35_20610 PF02142 MGS-like domain BED35_20615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BED35_20615 PF02843 Phosphoribosylglycinamide synthetase, C domain BED35_20615 PF02844 Phosphoribosylglycinamide synthetase, N domain BED35_20620 PF07356 BED35_20620 BED35_20625 PF00216 Bacterial DNA-binding protein BED35_20630 PF04222 Protein of unknown function (DUF416) BED35_20635 PF04493 Endonuclease V BED35_20640 PF01208 Uroporphyrinogen decarboxylase (URO-D) BED35_20645 PF00293 NUDIX domain BED35_20645 PF09297 NADH pyrophosphatase zinc ribbon domain BED35_20650 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BED35_20655 PF01964 ThiC family BED35_20655 PF13667 ThiC-associated domain BED35_20660 PF02581 Thiamine monophosphate synthase/TENI BED35_20665 PF00899 ThiF family BED35_20670 PF02597 ThiS family BED35_20675 PF05690 Thiazole biosynthesis protein ThiG BED35_20680 PF04055 Radical SAM superfamily BED35_20680 PF06968 Biotin and Thiamin Synthesis associated domain BED35_20685 PF01548 BED35_20685 BED35_20685 PF02371 BED35_20685 BED35_20690 PF00623 RNA polymerase Rpb1, domain 2 BED35_20690 PF04983 RNA polymerase Rpb1, domain 3 BED35_20690 PF04997 RNA polymerase Rpb1, domain 1 BED35_20690 PF04998 RNA polymerase Rpb1, domain 5 BED35_20690 PF05000 RNA polymerase Rpb1, domain 4 BED35_20695 PF00562 RNA polymerase Rpb2, domain 6 BED35_20695 PF04560 RNA polymerase Rpb2, domain 7 BED35_20695 PF04561 RNA polymerase Rpb2, domain 2 BED35_20695 PF04563 RNA polymerase beta subunit BED35_20695 PF04565 RNA polymerase Rpb2, domain 3 BED35_20695 PF10385 RNA polymerase beta subunit external 1 domain BED35_20700 PF00542 Ribosomal protein L7/L12 C-terminal domain BED35_20700 PF16320 BED35_20700 BED35_20705 PF00466 Ribosomal protein L10 BED35_20710 PF00687 Ribosomal protein L1p/L10e family BED35_20715 PF00298 Ribosomal protein L11, RNA binding domain BED35_20715 PF03946 Ribosomal protein L11, N-terminal domain BED35_20720 PF00467 KOW motif BED35_20720 PF02357 Transcription termination factor nusG BED35_20725 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BED35_20730 PF00009 Elongation factor Tu GTP binding domain BED35_20730 PF03143 Elongation factor Tu C-terminal domain BED35_20730 PF03144 Elongation factor Tu domain 2 BED35_20765 PF00485 Phosphoribulokinase / Uridine kinase family BED35_20770 PF02237 Biotin protein ligase C terminal domain BED35_20770 PF03099 Biotin/lipoate A/B protein ligase family BED35_20770 PF08279 HTH domain BED35_20775 PF01565 FAD binding domain BED35_20775 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BED35_20780 PF02371 BED35_20780 BED35_20785 PF13518 Helix-turn-helix domain BED35_20810 PF12724 Flavodoxin domain BED35_20815 PF02386 Cation transport protein BED35_20820 PF01205 Uncharacterized protein family UPF0029 BED35_20820 PF09186 Domain of unknown function (DUF1949) BED35_20825 PF00557 Metallopeptidase family M24 BED35_20830 PF00378 Enoyl-CoA hydratase/isomerase family BED35_20830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED35_20830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED35_20835 PF00108 Thiolase, N-terminal domain BED35_20835 PF02803 Thiolase, C-terminal domain BED35_20840 PF00175 Oxidoreductase NAD-binding domain BED35_20840 PF00970 Oxidoreductase FAD-binding domain BED35_20845 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED35_20850 PF02357 Transcription termination factor nusG BED35_20855 PF00490 Delta-aminolevulinic acid dehydratase BED35_20860 PF01026 TatD related DNase BED35_20865 PF00902 Sec-independent protein translocase protein (TatC) BED35_20875 PF02416 mttA/Hcf106 family BED35_20880 PF03109 BED35_20880 BED35_20885 PF02036 SCP-2 sterol transfer family BED35_20890 PF01209 ubiE/COQ5 methyltransferase family BED35_20905 PF02554 BED35_20905 BED35_20905 PF13722 BED35_20905 BED35_20910 PF13350 Tyrosine phosphatase family BED35_20915 PF01048 Phosphorylase superfamily BED35_20920 PF01738 Dienelactone hydrolase family BED35_20925 PF01717 Cobalamin-independent synthase, Catalytic domain BED35_20925 PF08267 Cobalamin-independent synthase, N-terminal domain BED35_20930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED35_20930 PF03466 LysR substrate binding domain BED35_20935 PF00892 EamA-like transporter family BED35_20940 PF03547 BED35_20940 BED35_20945 PF03009 Glycerophosphoryl diester phosphodiesterase family BED35_20950 PF00005 ABC transporter BED35_20950 PF08402 TOBE domain BED35_20955 PF00528 Binding-protein-dependent transport system inner membrane component BED35_20960 PF00528 Binding-protein-dependent transport system inner membrane component BED35_20965 PF13416 Bacterial extracellular solute-binding protein BED35_20970 PF04449 CS1 type fimbrial major subunit BED35_20975 PF16967 BED35_20975 BED35_20980 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_21000 PF00005 ABC transporter BED35_21005 PF00005 ABC transporter BED35_21005 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED35_21010 PF02653 BED35_21010 BED35_21010 PF11862 BED35_21010 BED35_21015 PF02653 BED35_21015 BED35_21020 PF13458 Periplasmic binding protein BED35_21025 PF12568 Acetyltransferase (GNAT) domain BED35_21040 PF00140 Sigma-70 factor, region 1 BED35_21040 PF04542 Sigma-70 region 2 BED35_21040 PF04545 Sigma-70, region 4 BED35_21045 PF02687 BED35_21045 BED35_21050 PF00005 ABC transporter BED35_21055 PF00448 SRP54-type protein, GTPase domain BED35_21055 PF02881 SRP54-type protein, helical bundle domain BED35_21060 PF03602 Conserved hypothetical protein 95 BED35_21065 PF06611 BED35_21065 BED35_21070 PF10694 Protein of unknown function (DUF2500) BED35_21075 PF08850 BED35_21075 BED35_21080 PF07947 BED35_21080 BED35_21085 PF00122 E1-E2 ATPase BED35_21085 PF00403 Heavy-metal-associated domain BED35_21085 PF00702 haloacid dehalogenase-like hydrolase BED35_21090 PF01206 Sulfurtransferase TusA BED35_21095 PF02592 BED35_21095 BED35_21100 PF08786 Domain of unknown function (DUF1795) BED35_21105 PF02754 BED35_21105 BED35_21105 PF13183 4Fe-4S dicluster domain BED35_21110 PF00890 FAD binding domain BED35_21115 PF01266 FAD dependent oxidoreductase BED35_21115 PF04324 BFD-like [2Fe-2S] binding domain BED35_21120 PF07690 Major Facilitator Superfamily BED35_21125 PF03009 Glycerophosphoryl diester phosphodiesterase family BED35_21130 PF08282 haloacid dehalogenase-like hydrolase BED35_21135 PF12146 Putative lysophospholipase BED35_21140 PF01810 BED35_21140 BED35_21145 PF01810 BED35_21145 BED35_21150 PF00270 DEAD/DEAH box helicase BED35_21150 PF00271 Helicase conserved C-terminal domain BED35_21150 PF00570 HRDC domain BED35_21150 PF09382 RQC domain BED35_21150 PF16124 BED35_21150 BED35_21155 PF02253 Phospholipase A1 BED35_21160 PF03061 Thioesterase superfamily BED35_21165 PF00892 EamA-like transporter family BED35_21170 PF01544 CorA-like Mg2+ transporter protein BED35_21175 PF09370 TIM-barrel signal transduction protein BED35_21180 PF06792 Uncharacterised protein family (UPF0261) BED35_21185 PF00440 Bacterial regulatory proteins, tetR family BED35_21190 PF00580 UvrD/REP helicase N-terminal domain BED35_21190 PF13361 UvrD-like helicase C-terminal domain BED35_21195 PF13419 Haloacid dehalogenase-like hydrolase BED35_21200 PF00589 Phage integrase family BED35_21200 PF02899 Phage integrase, N-terminal SAM-like domain BED35_21205 PF04340 Protein of unknown function, DUF484 BED35_21210 PF01678 Diaminopimelate epimerase BED35_21215 PF13627 BED35_21215 BED35_21220 PF01491 Frataxin-like domain BED35_21225 PF13454 FAD-NAD(P)-binding BED35_21230 PF01295 BED35_21230 BED35_21230 PF12633 BED35_21230 BED35_21235 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BED35_21235 PF03900 Porphobilinogen deaminase, C-terminal domain BED35_21240 PF02602 Uroporphyrinogen-III synthase HemD BED35_21245 PF04375 BED35_21245 BED35_21250 PF07219 BED35_21250 BED35_21255 PF01548 BED35_21255 BED35_21255 PF02371 BED35_21255 BED35_21285 PF03808 BED35_21285 BED35_21290 PF06899 BED35_21290 BED35_21295 PF07429 BED35_21295 BED35_21300 PF01943 BED35_21300 BED35_21305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED35_21310 PF00583 Acetyltransferase (GNAT) family BED35_21315 PF00483 Nucleotidyl transferase BED35_21320 PF16363 BED35_21320 BED35_21325 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED35_21325 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED35_21325 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED35_21330 PF02350 UDP-N-acetylglucosamine 2-epimerase BED35_21335 PF02706 Chain length determinant protein BED35_21340 PF00953 Glycosyl transferase family 4 BED35_21345 PF01548 BED35_21345 BED35_21345 PF02371 BED35_21345 BED35_21350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_21350 PF07497 Rho termination factor, RNA-binding domain BED35_21350 PF07498 Rho termination factor, N-terminal domain BED35_21355 PF00085 Thioredoxin BED35_21360 PF00270 DEAD/DEAH box helicase BED35_21360 PF00271 Helicase conserved C-terminal domain BED35_21365 PF02541 Ppx/GppA phosphatase family BED35_21370 PF00295 Glycosyl hydrolases family 28 BED35_21375 PF00580 UvrD/REP helicase N-terminal domain BED35_21375 PF13361 UvrD-like helicase C-terminal domain BED35_21380 PF13616 PPIC-type PPIASE domain BED35_21390 PF13358 DDE superfamily endonuclease BED35_21390 PF13384 Homeodomain-like domain BED35_21395 PF08843 Nucleotidyl transferase of unknown function (DUF1814) BED35_21410 PF02661 Fic/DOC family BED35_21410 PF13784 Fic/DOC family N-terminal BED35_21415 PF03288 Poxvirus D5 protein-like BED35_21415 PF08273 Zinc-binding domain of primase-helicase BED35_21415 PF08706 BED35_21415 BED35_21415 PF13362 Toprim domain BED35_21420 PF05973 BED35_21420 BED35_21425 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED35_21445 PF00589 Phage integrase family BED35_21445 PF13356 Domain of unknown function (DUF4102) BED35_21450 PF12833 Helix-turn-helix domain BED35_21450 PF13377 Periplasmic binding protein-like domain BED35_21455 PF02653 BED35_21455 BED35_21460 PF00005 ABC transporter BED35_21465 PF13407 Periplasmic binding protein domain BED35_21475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED35_21475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED35_21480 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED35_21480 PF02753 Pili assembly chaperone PapD, C-terminal domain BED35_21485 PF00857 Isochorismatase family BED35_21490 PF01965 DJ-1/PfpI family BED35_21490 PF12833 Helix-turn-helix domain BED35_21495 PF01757 BED35_21495 BED35_21500 PF07690 Major Facilitator Superfamily BED35_21505 PF00009 Elongation factor Tu GTP binding domain BED35_21505 PF09106 Elongation factor SelB, winged helix BED35_21505 PF09107 Elongation factor SelB, winged helix BED35_21510 PF03841 L-seryl-tRNA selenium transferase BED35_21510 PF12390 BED35_21510 BED35_21515 PF04216 Protein involved in formate dehydrogenase formation BED35_21520 PF01292 Prokaryotic cytochrome b561 BED35_21525 PF09163 Formate dehydrogenase N, transmembrane BED35_21525 PF13247 4Fe-4S dicluster domain BED35_21530 PF00384 Molybdopterin oxidoreductase BED35_21530 PF01568 Molydopterin dinucleotide binding domain BED35_21535 PF00384 Molybdopterin oxidoreductase BED35_21535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED35_21540 PF02634 FdhD/NarQ family BED35_21545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED35_21545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED35_21550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_21550 PF00672 HAMP domain BED35_21550 PF16591 BED35_21550 BED35_21555 PF03473 MOSC domain BED35_21555 PF03475 3-alpha domain BED35_21560 PF01850 PIN domain BED35_21565 PF04014 Antidote-toxin recognition MazE BED35_21570 PF10928 Protein of unknown function (DUF2810) BED35_21575 PF00155 Aminotransferase class I and II BED35_21575 PF00392 Bacterial regulatory proteins, gntR family BED35_21580 PF01810 BED35_21580 BED35_21585 PF05068 Mannitol repressor BED35_21590 PF01232 Mannitol dehydrogenase Rossmann domain BED35_21590 PF08125 Mannitol dehydrogenase C-terminal domain BED35_21595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED35_21595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED35_21595 PF02378 Phosphotransferase system, EIIC BED35_21600 PF11254 BED35_21600 BED35_21605 PF02092 BED35_21605 BED35_21605 PF05746 DALR anticodon binding domain BED35_21610 PF02091 Glycyl-tRNA synthetase alpha subunit BED35_21615 PF03352 Methyladenine glycosylase BED35_21620 PF13673 Acetyltransferase (GNAT) domain BED35_21630 PF08964 Beta/Gamma crystallin BED35_21645 PF07690 Major Facilitator Superfamily BED35_21650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED35_21650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED35_21655 PF00128 Alpha amylase, catalytic domain BED35_21660 PF00155 Aminotransferase class I and II BED35_21665 PF02080 TrkA-C domain BED35_21665 PF06826 BED35_21665 BED35_21670 PF01548 BED35_21670 BED35_21670 PF02371 BED35_21670 BED35_21675 PF07690 Major Facilitator Superfamily BED35_21690 PF00175 Oxidoreductase NAD-binding domain BED35_21690 PF00970 Oxidoreductase FAD-binding domain BED35_21695 PF05656 BED35_21695 BED35_21700 PF07305 BED35_21700 BED35_21705 PF00121 Triosephosphate isomerase BED35_21710 PF15644 Papain fold toxin 1 BED35_21715 PF13531 Bacterial extracellular solute-binding protein BED35_21720 PF00365 Phosphofructokinase BED35_21725 PF01545 Cation efflux family BED35_21725 PF16916 BED35_21725 BED35_21730 PF07813 LTXXQ motif family protein BED35_21735 PF00072 Response regulator receiver domain BED35_21735 PF00486 Transcriptional regulatory protein, C terminal BED35_21740 PF00512 His Kinase A (phospho-acceptor) domain BED35_21740 PF00672 HAMP domain BED35_21740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_21740 PF16527 BED35_21740 BED35_21745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED35_21745 PF02805 Metal binding domain of Ada BED35_21745 PF12833 Helix-turn-helix domain BED35_21750 PF00588 SpoU rRNA Methylase family BED35_21755 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_21755 PF06426 Serine acetyltransferase, N-terminal BED35_21760 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BED35_21760 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BED35_21765 PF02556 Preprotein translocase subunit SecB BED35_21770 PF00462 Glutaredoxin BED35_21775 PF00581 Rhodanese-like domain BED35_21780 PF01676 Metalloenzyme superfamily BED35_21780 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BED35_21785 PF01551 Peptidase family M23 BED35_21790 PF04748 Divergent polysaccharide deacetylase BED35_21805 PF00107 Zinc-binding dehydrogenase BED35_21805 PF08240 Alcohol dehydrogenase GroES-like domain BED35_21810 PF00155 Aminotransferase class I and II BED35_21815 PF01370 NAD dependent epimerase/dehydratase family BED35_21820 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED35_21825 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED35_21830 PF00534 Glycosyl transferases group 1 BED35_21830 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BED35_21835 PF00535 Glycosyl transferase family 2 BED35_21840 PF01467 Cytidylyltransferase BED35_21845 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BED35_21845 PF06827 Zinc finger found in FPG and IleRS BED35_21845 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BED35_21850 PF00471 Ribosomal protein L33 BED35_21855 PF00830 Ribosomal L28 family BED35_21860 PF04002 RadC-like JAB domain BED35_21865 PF02441 Flavoprotein BED35_21865 PF04127 DNA / pantothenate metabolism flavoprotein BED35_21870 PF00692 dUTPase BED35_21875 PF00440 Bacterial regulatory proteins, tetR family BED35_21880 PF00156 Phosphoribosyl transferase domain BED35_21885 PF01138 3' exoribonuclease family, domain 1 BED35_21885 PF03725 3' exoribonuclease family, domain 2 BED35_21890 PF03755 BED35_21890 BED35_21890 PF08340 BED35_21890 BED35_21895 PF00589 Phage integrase family BED35_21895 PF13356 Domain of unknown function (DUF4102) BED35_21905 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED35_21915 PF08346 BED35_21915 BED35_21935 PF13973 BED35_21935 BED35_21945 PF06048 BED35_21945 BED35_21945 PF08273 Zinc-binding domain of primase-helicase BED35_21945 PF13362 Toprim domain BED35_21980 PF04326 Divergent AAA domain BED35_21985 PF00753 Metallo-beta-lactamase superfamily BED35_21995 PF00563 EAL domain BED35_21995 PF00990 GGDEF domain BED35_21995 PF13426 PAS domain BED35_22000 PF00378 Enoyl-CoA hydratase/isomerase family BED35_22005 PF01773 Na+ dependent nucleoside transporter N-terminus BED35_22005 PF07662 Na+ dependent nucleoside transporter C-terminus BED35_22010 PF13358 DDE superfamily endonuclease BED35_22010 PF13384 Homeodomain-like domain BED35_22020 PF03458 BED35_22020 BED35_22030 PF00625 Guanylate kinase BED35_22035 PF01192 RNA polymerase Rpb6 BED35_22040 PF02824 TGS domain BED35_22040 PF04607 Region found in RelA / SpoT proteins BED35_22040 PF13291 ACT domain BED35_22040 PF13328 HD domain BED35_22045 PF00588 SpoU rRNA Methylase family BED35_22045 PF12105 SpoU, rRNA methylase, C-terminal BED35_22050 PF00270 DEAD/DEAH box helicase BED35_22050 PF00271 Helicase conserved C-terminal domain BED35_22050 PF17191 BED35_22050 BED35_22055 PF03616 BED35_22055 BED35_22060 PF00860 Permease family BED35_22070 PF00196 Bacterial regulatory proteins, luxR family BED35_22070 PF08448 PAS fold BED35_22075 PF00196 Bacterial regulatory proteins, luxR family BED35_22075 PF08448 PAS fold BED35_22080 PF13693 Winged helix-turn-helix DNA-binding BED35_22085 PF00583 Acetyltransferase (GNAT) family BED35_22085 PF09500 Putative thioesterase (yiiD_Cterm) BED35_22090 PF02580 D-Tyr-tRNA(Tyr) deacylase BED35_22095 PF03631 BED35_22095 BED35_22100 PF13419 Haloacid dehalogenase-like hydrolase BED35_22105 PF00009 Elongation factor Tu GTP binding domain BED35_22105 PF00679 Elongation factor G C-terminus BED35_22105 PF03144 Elongation factor Tu domain 2 BED35_22110 PF00120 Glutamine synthetase, catalytic domain BED35_22110 PF03951 Glutamine synthetase, beta-Grasp domain BED35_22120 PF00512 His Kinase A (phospho-acceptor) domain BED35_22120 PF00989 PAS fold BED35_22120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_22125 PF00072 Response regulator receiver domain BED35_22125 PF00158 Sigma-54 interaction domain BED35_22125 PF02954 Bacterial regulatory protein, Fis family BED35_22130 PF04055 Radical SAM superfamily BED35_22130 PF06969 HemN C-terminal domain BED35_22135 PF04220 BED35_22135 BED35_22140 PF01926 50S ribosome-binding GTPase BED35_22145 PF00476 DNA polymerase family A BED35_22145 PF01367 5'-3' exonuclease, C-terminal SAM fold BED35_22145 PF01612 3'-5' exonuclease BED35_22145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED35_22150 PF01323 DSBA-like thioredoxin domain BED35_22155 PF01636 Phosphotransferase enzyme family BED35_22160 PF06288 Protein of unknown function (DUF1040) BED35_22165 PF12804 MobA-like NTP transferase domain BED35_22170 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BED35_22175 PF00665 Integrase core domain BED35_22180 PF13518 Helix-turn-helix domain BED35_22205 PF00392 Bacterial regulatory proteins, gntR family BED35_22205 PF07729 FCD domain BED35_22215 PF00356 Bacterial regulatory proteins, lacI family BED35_22215 PF13377 Periplasmic binding protein-like domain BED35_22220 PF00294 pfkB family carbohydrate kinase BED35_22225 PF13407 Periplasmic binding protein domain BED35_22230 PF02653 BED35_22230 BED35_22235 PF00005 ABC transporter BED35_22240 PF05025 RbsD / FucU transport protein family BED35_22245 PF02705 BED35_22245 BED35_22250 PF07728 AAA domain (dynein-related subfamily) BED35_22250 PF12592 Protein of unknown function (DUF3763) BED35_22255 PF05762 VWA domain containing CoxE-like protein BED35_22260 PF07077 BED35_22260 BED35_22265 PF03590 Aspartate-ammonia ligase BED35_22270 PF01037 AsnC family BED35_22270 PF13404 AsnC-type helix-turn-helix domain BED35_22275 PF00258 Flavodoxin BED35_22280 PF01134 Glucose inhibited division protein A BED35_22280 PF13932 GidA associated domain 3 BED35_22285 PF02527 rRNA small subunit methyltransferase G BED35_22290 PF03899 BED35_22290 BED35_22295 PF00119 ATP synthase A chain BED35_22300 PF00137 ATP synthase subunit C BED35_22305 PF00430 ATP synthase B/B' CF(0) BED35_22310 PF00213 ATP synthase delta (OSCP) subunit BED35_22315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_22315 PF00306 ATP synthase alpha/beta chain, C terminal domain BED35_22315 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED35_22320 PF00231 ATP synthase BED35_22325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED35_22325 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED35_22330 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BED35_22330 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BED35_22335 PF00132 Bacterial transferase hexapeptide (six repeats) BED35_22335 PF12804 MobA-like NTP transferase domain BED35_22340 PF01380 SIS domain BED35_22340 PF13522 Glutamine amidotransferase domain BED35_22345 PF12849 PBP superfamily domain BED35_22350 PF00528 Binding-protein-dependent transport system inner membrane component BED35_22355 PF00528 Binding-protein-dependent transport system inner membrane component BED35_22360 PF00005 ABC transporter BED35_22365 PF01895 PhoU domain BED35_22370 PF04519 BED35_22370 BED35_22375 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED35_22385 PF00528 Binding-protein-dependent transport system inner membrane component BED35_22390 PF13419 Haloacid dehalogenase-like hydrolase BED35_22395 PF00860 Permease family BED35_22400 PF03928 Domain of unknown function (DUF336) BED35_22405 PF00072 Response regulator receiver domain BED35_22405 PF00196 Bacterial regulatory proteins, luxR family BED35_22410 PF00512 His Kinase A (phospho-acceptor) domain BED35_22410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED35_22415 PF03358 NADPH-dependent FMN reductase BED35_22420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED35_22420 PF02743 Cache domain BED35_22425 PF00528 Binding-protein-dependent transport system inner membrane component BED35_22430 PF00005 ABC transporter BED35_22430 PF09383 NIL domain BED35_22435 PF03180 NLPA lipoprotein BED35_22440 PF07055 Enoyl reductase FAD binding domain BED35_22440 PF12241 Trans-2-enoyl-CoA reductase catalytic region BED35_22440 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BED35_22445 PF01926 50S ribosome-binding GTPase BED35_22445 PF10396 GTP-binding protein TrmE N-terminus BED35_22445 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE BED35_22450 PF02096 60Kd inner membrane protein BED35_22450 PF14849 YidC periplasmic domain BED35_22455 PF01809 BED35_22455 BED35_22460 PF00825 Ribonuclease P BED35_22465 PF00468 Ribosomal protein L34