BED35_00025 SM00530 Helix-turn-helix XRE-family like proteins BED35_00110 SM00886 Stress responsive A/B Barrel Domain BED35_00130 SM00634 Bacterial Ig-like domain (group 1) BED35_00265 SM00912 haemagglutination activity domain BED35_00275 SM00869 Autotransporter beta-domain BED35_00280 SM00857 Resolvase, N terminal domain BED35_00500 SM00364 Leucine-rich repeats, bacterial type BED35_00605 SM00155 Phospholipase D. Active site motifs. BED35_00635 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED35_00650 SM00857 Resolvase, N terminal domain BED35_00725 SM00470 ParB-like nuclease domain BED35_00765 SM00194 Protein tyrosine phosphatase, catalytic domain BED35_00765 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED35_00835 SM00342 helix_turn_helix, arabinose operon control protein BED35_00935 SM00382 ATPases associated with a variety of cellular activities BED35_00935 SM00760 Bacterial dnaA protein helix-turn-helix domain BED35_00940 SM00480 DNA polymerase III beta subunit BED35_00950 SM00387 Histidine kinase-like ATPases BED35_00950 SM00433 TopoisomeraseII BED35_01030 SM00382 ATPases associated with a variety of cellular activities BED35_01030 SM01086 C-terminal, D2-small domain, of ClpB protein BED35_01045 SM00354 helix_turn _helix lactose operon repressor BED35_01050 SM00487 DEAD-like helicases superfamily BED35_01050 SM00490 helicase superfamily c-terminal domain BED35_01090 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED35_01130 SM00382 ATPases associated with a variety of cellular activities BED35_01235 SM00382 ATPases associated with a variety of cellular activities BED35_01260 SM00382 ATPases associated with a variety of cellular activities BED35_01365 SM00354 helix_turn _helix lactose operon repressor BED35_01400 SM00912 haemagglutination activity domain BED35_01430 SM00387 Histidine kinase-like ATPases BED35_01435 SM00421 helix_turn_helix, Lux Regulon BED35_01435 SM00448 cheY-homologous receiver domain BED35_01470 SM00382 ATPases associated with a variety of cellular activities BED35_01475 SM00382 ATPases associated with a variety of cellular activities BED35_01520 SM00028 Tetratricopeptide repeats BED35_01530 SM00052 Putative diguanylate phosphodiesterase BED35_01570 SM00052 Putative diguanylate phosphodiesterase BED35_01590 SM00869 Autotransporter beta-domain BED35_01620 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED35_01660 SM00382 ATPases associated with a variety of cellular activities BED35_01690 SM00382 ATPases associated with a variety of cellular activities BED35_01700 SM00954 Region found in RelA / SpoT proteins BED35_01835 SM00354 helix_turn _helix lactose operon repressor BED35_01855 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED35_01880 SM00642 Alpha-amylase domain BED35_01885 SM00642 Alpha-amylase domain BED35_01920 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_01920 SM01134 BED35_01920 BED35_01930 SM00450 Rhodanese Homology Domain BED35_01940 SM00421 helix_turn_helix, Lux Regulon BED35_01990 SM00899 BED35_01990 BED35_01995 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_01995 SM00732 Likely ribonuclease with RNase H fold. BED35_02025 SM00448 cheY-homologous receiver domain BED35_02025 SM00862 Transcriptional regulatory protein, C terminal BED35_02030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_02030 SM00387 Histidine kinase-like ATPases BED35_02030 SM00388 His Kinase A (phosphoacceptor) domain BED35_02045 SM00363 S4 RNA-binding domain BED35_02160 SM00354 helix_turn _helix lactose operon repressor BED35_02175 SM00382 ATPases associated with a variety of cellular activities BED35_02195 SM00100 Cyclic nucleotide-monophosphate binding domain BED35_02195 SM00419 helix_turn_helix, cAMP Regulatory protein BED35_02230 SM00062 Bacterial periplasmic substrate-binding proteins BED35_02260 SM00382 ATPases associated with a variety of cellular activities BED35_02325 SM00838 Elongation factor G C-terminus BED35_02325 SM00889 Elongation factor G, domain IV BED35_02345 SM01403 BED35_02345 BED35_02365 SM01382 BED35_02365 BED35_02365 SM01383 BED35_02365 BED35_02380 SM00322 K homology RNA-binding domain BED35_02400 SM01374 BED35_02400 BED35_02405 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED35_02470 SM00363 S4 RNA-binding domain BED35_02470 SM01390 BED35_02470 BED35_02475 SM00662 RNA polymerases D BED35_02490 SM00422 helix_turn_helix, mercury resistance BED35_02610 SM00346 helix_turn_helix isocitrate lyase regulation BED35_02615 SM01018 B12 binding domain BED35_02620 SM00912 haemagglutination activity domain BED35_02670 SM00382 ATPases associated with a variety of cellular activities BED35_02700 SM00563 Phosphate acyltransferases BED35_02745 SM00829 Enoylreductase BED35_02750 SM00382 ATPases associated with a variety of cellular activities BED35_02785 SM00530 Helix-turn-helix XRE-family like proteins BED35_02820 SM00382 ATPases associated with a variety of cellular activities BED35_02835 SM00062 Bacterial periplasmic substrate-binding proteins BED35_02860 SM00357 Cold shock protein domain BED35_02865 SM00357 Cold shock protein domain BED35_02905 SM00878 Biotin carboxylase C-terminal domain BED35_02930 SM00829 Enoylreductase BED35_02935 SM00052 Putative diguanylate phosphodiesterase BED35_02935 SM00267 diguanylate cyclase BED35_02960 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_03315 SM00530 Helix-turn-helix XRE-family like proteins BED35_03330 SM00354 helix_turn _helix lactose operon repressor BED35_03340 SM00642 Alpha-amylase domain BED35_03350 SM00460 Transglutaminase/protease-like homologues BED35_03405 SM00382 ATPases associated with a variety of cellular activities BED35_03435 SM00382 ATPases associated with a variety of cellular activities BED35_03470 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED35_03475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED35_03530 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_03535 SM00073 Histidine Phosphotransfer domain BED35_03535 SM00091 PAS domain BED35_03535 SM00387 Histidine kinase-like ATPases BED35_03535 SM00388 His Kinase A (phosphoacceptor) domain BED35_03535 SM00448 cheY-homologous receiver domain BED35_03550 SM00749 bacterial OsmY and nodulation domain BED35_03590 SM00857 Resolvase, N terminal domain BED35_03610 SM00530 Helix-turn-helix XRE-family like proteins BED35_03650 SM00829 Enoylreductase BED35_03710 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_03710 SM00895 BED35_03710 BED35_03730 SM00858 BED35_03730 BED35_03765 SM00869 Autotransporter beta-domain BED35_03775 SM00869 Autotransporter beta-domain BED35_03880 SM00400 zinc finger BED35_03880 SM00493 BED35_03880 BED35_03880 SM00766 DNA primase DnaG DnaB-binding BED35_03895 SM01207 BED35_03895 BED35_03900 SM00905 Dihydroneopterin aldolase BED35_03910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_03915 SM00287 Bacterial SH3 domain homologues BED35_03920 SM01118 BED35_03920 BED35_03995 SM00387 Histidine kinase-like ATPases BED35_03995 SM00433 TopoisomeraseII BED35_04015 SM00434 DNA Topoisomerase IV BED35_04020 SM00563 Phosphate acyltransferases BED35_04030 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_04045 SM00342 helix_turn_helix, arabinose operon control protein BED35_04170 SM00342 helix_turn_helix, arabinose operon control protein BED35_04195 SM00382 ATPases associated with a variety of cellular activities BED35_04230 SM00382 ATPases associated with a variety of cellular activities BED35_04260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_04305 SM00382 ATPases associated with a variety of cellular activities BED35_04330 SM00382 ATPases associated with a variety of cellular activities BED35_04350 SM00858 BED35_04350 BED35_04555 SM00052 Putative diguanylate phosphodiesterase BED35_04555 SM00091 PAS domain BED35_04555 SM00267 diguanylate cyclase BED35_04600 SM00354 helix_turn _helix lactose operon repressor BED35_04620 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_04775 SM00478 endonuclease III BED35_04775 SM00525 BED35_04775 BED35_04800 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_04810 SM01152 BED35_04810 BED35_04845 SM00732 Likely ribonuclease with RNase H fold. BED35_04870 SM00731 SprT homologues. BED35_04875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED35_04915 SM00861 Transketolase, pyrimidine binding domain BED35_04920 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED35_04935 SM00194 Protein tyrosine phosphatase, catalytic domain BED35_04935 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED35_05115 SM00257 Lysin motif BED35_05125 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BED35_05125 SM00534 ATPase domain of DNA mismatch repair MUTS family BED35_05195 SM00382 ATPases associated with a variety of cellular activities BED35_05205 SM00382 ATPases associated with a variety of cellular activities BED35_05215 SM00825 Beta-ketoacyl synthase BED35_05230 SM00822 BED35_05230 BED35_05240 SM01235 BED35_05240 BED35_05250 SM00838 Elongation factor G C-terminus BED35_05250 SM00889 Elongation factor G, domain IV BED35_05255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED35_05295 SM01012 BED35_05295 BED35_05310 SM00382 ATPases associated with a variety of cellular activities BED35_05340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED35_05375 SM00382 ATPases associated with a variety of cellular activities BED35_05385 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED35_05430 SM01091 Transporter associated domain BED35_05450 SM00382 ATPases associated with a variety of cellular activities BED35_05450 SM00962 SRP54-type protein, GTPase domain BED35_05450 SM00963 SRP54-type protein, helical bundle domain BED35_05485 SM00448 cheY-homologous receiver domain BED35_05485 SM00850 LytTr DNA-binding domain BED35_05495 SM00830 Chorismate mutase type II BED35_05500 SM00830 Chorismate mutase type II BED35_05510 SM00382 ATPases associated with a variety of cellular activities BED35_05510 SM01086 C-terminal, D2-small domain, of ClpB protein BED35_05520 SM00363 S4 RNA-binding domain BED35_05580 SM00155 Phospholipase D. Active site motifs. BED35_05585 SM00881 CoA binding domain BED35_05590 SM01144 BED35_05590 BED35_05600 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED35_05620 SM00347 helix_turn_helix multiple antibiotic resistance protein BED35_05665 SM00062 Bacterial periplasmic substrate-binding proteins BED35_05680 SM00382 ATPases associated with a variety of cellular activities BED35_05815 SM00530 Helix-turn-helix XRE-family like proteins BED35_05840 SM00382 ATPases associated with a variety of cellular activities BED35_06075 SM01007 Class II Aldolase and Adducin N-terminal domain BED35_06105 SM00710 Parallel beta-helix repeats BED35_06145 SM00900 BED35_06145 BED35_06230 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED35_06240 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_06240 SM00866 BED35_06240 BED35_06260 SM01068 Putative carbohydrate binding domain BED35_06330 SM00448 cheY-homologous receiver domain BED35_06330 SM00862 Transcriptional regulatory protein, C terminal BED35_06335 SM00091 PAS domain BED35_06335 SM00387 Histidine kinase-like ATPases BED35_06335 SM00388 His Kinase A (phosphoacceptor) domain BED35_06355 SM00642 Alpha-amylase domain BED35_06400 SM01323 BED35_06400 BED35_06460 SM00861 Transketolase, pyrimidine binding domain BED35_06475 SM00981 BED35_06475 BED35_06560 SM00382 ATPases associated with a variety of cellular activities BED35_06560 SM00994 ClpX C4-type zinc finger BED35_06560 SM01086 C-terminal, D2-small domain, of ClpB protein BED35_06565 SM00382 ATPases associated with a variety of cellular activities BED35_06565 SM00464 Found in ATP-dependent protease La (LON) BED35_06570 SM00411 bacterial (prokaryotic) histone like domain BED35_06580 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED35_06610 SM00344 helix_turn_helix ASNC type BED35_06615 SM00382 ATPases associated with a variety of cellular activities BED35_06620 SM00382 ATPases associated with a variety of cellular activities BED35_06625 SM00938 Nitrogen regulatory protein P-II BED35_06670 SM00382 ATPases associated with a variety of cellular activities BED35_06765 SM00382 ATPases associated with a variety of cellular activities BED35_06775 SM00493 BED35_06775 BED35_06780 SM00387 Histidine kinase-like ATPases BED35_06880 SM00422 helix_turn_helix, mercury resistance BED35_06890 SM00244 prohibitin homologues BED35_06900 SM00822 BED35_06900 BED35_06910 SM00382 ATPases associated with a variety of cellular activities BED35_06925 SM01001 AIR carboxylase BED35_06940 SM00840 BED35_06940 BED35_07075 SM00382 ATPases associated with a variety of cellular activities BED35_07400 SM00530 Helix-turn-helix XRE-family like proteins BED35_07425 SM00382 ATPases associated with a variety of cellular activities BED35_07465 SM00507 HNH nucleases BED35_07525 SM01252 BED35_07525 BED35_07615 SM01040 BRO family, N-terminal domain BED35_07620 SM01252 BED35_07620 BED35_07770 SM00448 cheY-homologous receiver domain BED35_07770 SM00862 Transcriptional regulatory protein, C terminal BED35_07790 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BED35_07805 SM00382 ATPases associated with a variety of cellular activities BED35_07840 SM00357 Cold shock protein domain BED35_07850 SM00267 diguanylate cyclase BED35_07860 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_07875 SM00936 Penicillin-binding protein 5, C-terminal domain BED35_07930 SM00382 ATPases associated with a variety of cellular activities BED35_07945 SM00062 Bacterial periplasmic substrate-binding proteins BED35_07960 SM00116 Domain in cystathionine beta-synthase and other proteins. BED35_07960 SM01091 Transporter associated domain BED35_07975 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_08060 SM01081 Putative carbohydrate binding domain BED35_08075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_08110 SM00448 cheY-homologous receiver domain BED35_08110 SM00862 Transcriptional regulatory protein, C terminal BED35_08115 SM00387 Histidine kinase-like ATPases BED35_08115 SM00388 His Kinase A (phosphoacceptor) domain BED35_08180 SM00796 Allophanate hydrolase subunit 1 BED35_08185 SM00797 Allophanate hydrolase subunit 2 BED35_08235 SM00861 Transketolase, pyrimidine binding domain BED35_08250 SM00881 CoA binding domain BED35_08355 SM00855 Phosphoglycerate mutase family BED35_08360 SM00477 DNA/RNA non-specific endonuclease BED35_08360 SM00892 DNA/RNA non-specific endonuclease BED35_08405 SM00382 ATPases associated with a variety of cellular activities BED35_08430 SM00382 ATPases associated with a variety of cellular activities BED35_08450 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_08450 SM00876 Biotin and Thiamin Synthesis associated domain BED35_08470 SM00382 ATPases associated with a variety of cellular activities BED35_08475 SM00487 DEAD-like helicases superfamily BED35_08475 SM00490 helicase superfamily c-terminal domain BED35_08490 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_08525 SM00382 ATPases associated with a variety of cellular activities BED35_08540 SM00487 DEAD-like helicases superfamily BED35_08540 SM00490 helicase superfamily c-terminal domain BED35_08555 SM00116 Domain in cystathionine beta-synthase and other proteins. BED35_08570 SM01118 BED35_08570 BED35_08575 SM00507 HNH nucleases BED35_08590 SM00382 ATPases associated with a variety of cellular activities BED35_08635 SM00382 ATPases associated with a variety of cellular activities BED35_08640 SM00450 Rhodanese Homology Domain BED35_08665 SM00382 ATPases associated with a variety of cellular activities BED35_08710 SM00487 DEAD-like helicases superfamily BED35_08710 SM00488 BED35_08710 BED35_08710 SM00491 BED35_08710 BED35_08735 SM00903 Flavin reductase like domain BED35_08745 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED35_08745 SM00091 PAS domain BED35_08745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_08750 SM00382 ATPases associated with a variety of cellular activities BED35_08760 SM00062 Bacterial periplasmic substrate-binding proteins BED35_08760 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED35_08790 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BED35_08830 SM00382 ATPases associated with a variety of cellular activities BED35_08845 SM00852 Probable molybdopterin binding domain BED35_08860 SM00382 ATPases associated with a variety of cellular activities BED35_08885 SM00829 Enoylreductase BED35_08910 SM00354 helix_turn _helix lactose operon repressor BED35_08920 SM00382 ATPases associated with a variety of cellular activities BED35_08930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED35_08930 SM00382 ATPases associated with a variety of cellular activities BED35_09015 SM00919 Malic enzyme, NAD binding domain BED35_09015 SM01274 BED35_09015 BED35_09090 SM01091 Transporter associated domain BED35_09120 SM00382 ATPases associated with a variety of cellular activities BED35_09185 SM01350 BED35_09185 BED35_09240 SM00382 ATPases associated with a variety of cellular activities BED35_09290 SM00382 ATPases associated with a variety of cellular activities BED35_09325 SM00877 BED35_09325 BED35_09330 SM00877 BED35_09330 BED35_09370 SM00877 BED35_09370 BED35_09375 SM00877 BED35_09375 BED35_09405 SM00877 BED35_09405 BED35_09410 SM00877 BED35_09410 BED35_09420 SM00342 helix_turn_helix, arabinose operon control protein BED35_09500 SM00382 ATPases associated with a variety of cellular activities BED35_09520 SM00855 Phosphoglycerate mutase family BED35_09540 SM00421 helix_turn_helix, Lux Regulon BED35_09620 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_09620 SM01134 BED35_09620 BED35_09630 SM00260 Two component signalling adaptor domain BED35_09630 SM00448 cheY-homologous receiver domain BED35_09640 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_09660 SM00382 ATPases associated with a variety of cellular activities BED35_09680 SM00387 Histidine kinase-like ATPases BED35_09685 SM00421 helix_turn_helix, Lux Regulon BED35_09685 SM00448 cheY-homologous receiver domain BED35_09690 SM00448 cheY-homologous receiver domain BED35_09695 SM00387 Histidine kinase-like ATPases BED35_09710 SM00764 Citrate lyase ligase C-terminal domain BED35_09835 SM00421 helix_turn_helix, Lux Regulon BED35_09835 SM00448 cheY-homologous receiver domain BED35_09910 SM00344 helix_turn_helix ASNC type BED35_09920 SM00829 Enoylreductase BED35_09930 SM01038 Beta galactosidase small chain BED35_09935 SM00354 helix_turn _helix lactose operon repressor BED35_09940 SM00357 Cold shock protein domain BED35_09950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_09950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_09970 SM00831 Cation transporter/ATPase, N-terminus BED35_09975 SM00829 Enoylreductase BED35_10005 SM00073 Histidine Phosphotransfer domain BED35_10005 SM00260 Two component signalling adaptor domain BED35_10005 SM00387 Histidine kinase-like ATPases BED35_10005 SM01231 BED35_10005 BED35_10010 SM00260 Two component signalling adaptor domain BED35_10015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_10015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_10015 SM00319 Homologues of the ligand binding domain of Tar BED35_10020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_10020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_10020 SM00319 Homologues of the ligand binding domain of Tar BED35_10025 SM00138 Methyltransferase, chemotaxis proteins BED35_10030 SM00448 cheY-homologous receiver domain BED35_10035 SM00448 cheY-homologous receiver domain BED35_10080 SM00858 BED35_10080 BED35_10125 SM00047 Lysozyme subfamily 2 BED35_10185 SM00382 ATPases associated with a variety of cellular activities BED35_10230 SM00478 endonuclease III BED35_10235 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_10240 SM00342 helix_turn_helix, arabinose operon control protein BED35_10290 SM00062 Bacterial periplasmic substrate-binding proteins BED35_10290 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED35_10300 SM00382 ATPases associated with a variety of cellular activities BED35_10360 SM00530 Helix-turn-helix XRE-family like proteins BED35_10380 SM00903 Flavin reductase like domain BED35_10455 SM00642 Alpha-amylase domain BED35_10570 SM00530 Helix-turn-helix XRE-family like proteins BED35_10650 SM01400 BED35_10650 BED35_10670 SM00937 BED35_10670 BED35_10700 SM00267 diguanylate cyclase BED35_10725 SM00481 DNA polymerase alpha chain like domain BED35_10800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_10800 SM00387 Histidine kinase-like ATPases BED35_10815 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_10875 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_10875 SM00866 BED35_10875 BED35_10900 SM00869 Autotransporter beta-domain BED35_10910 SM00257 Lysin motif BED35_10950 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_10950 SM01134 BED35_10950 BED35_10970 SM00363 S4 RNA-binding domain BED35_11040 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED35_11045 SM00382 ATPases associated with a variety of cellular activities BED35_11060 SM00382 ATPases associated with a variety of cellular activities BED35_11070 SM00257 Lysin motif BED35_11125 SM00487 DEAD-like helicases superfamily BED35_11125 SM00491 BED35_11125 BED35_11145 SM00341 Helicase and RNase D C-terminal BED35_11145 SM00474 3'-5' exonuclease BED35_11230 SM01022 BED35_11230 BED35_11250 SM00972 Spore Coat Protein U domain BED35_11255 SM00972 Spore Coat Protein U domain BED35_11285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED35_11290 SM00945 ProQ/FINO family BED35_11295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED35_11295 SM00245 tail specific protease BED35_11320 SM00346 helix_turn_helix isocitrate lyase regulation BED35_11325 SM00644 BED35_11325 BED35_11355 SM00382 ATPases associated with a variety of cellular activities BED35_11445 SM00382 ATPases associated with a variety of cellular activities BED35_11495 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED35_11520 SM00873 B3/4 domain BED35_11520 SM00874 tRNA synthetase B5 domain BED35_11520 SM00896 Ferredoxin-fold anticodon binding domain BED35_11525 SM00411 bacterial (prokaryotic) histone like domain BED35_11550 SM00382 ATPases associated with a variety of cellular activities BED35_11670 SM00382 ATPases associated with a variety of cellular activities BED35_11740 SM00354 helix_turn _helix lactose operon repressor BED35_11760 SM00479 BED35_11760 BED35_11815 SM00347 helix_turn_helix multiple antibiotic resistance protein BED35_11840 SM00363 S4 RNA-binding domain BED35_11895 SM00382 ATPases associated with a variety of cellular activities BED35_11900 SM00382 ATPases associated with a variety of cellular activities BED35_11930 SM00382 ATPases associated with a variety of cellular activities BED35_11965 SM00953 BED35_11965 BED35_11975 SM00091 PAS domain BED35_11975 SM00382 ATPases associated with a variety of cellular activities BED35_11985 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED35_12010 SM00148 Phospholipase C, catalytic domain (part); domain X BED35_12060 SM00382 ATPases associated with a variety of cellular activities BED35_12060 SM00487 DEAD-like helicases superfamily BED35_12060 SM00490 helicase superfamily c-terminal domain BED35_12060 SM00847 Helicase associated domain (HA2) Add an annotation BED35_12070 SM00530 Helix-turn-helix XRE-family like proteins BED35_12075 SM00020 Trypsin-like serine protease BED35_12090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_12090 SM00387 Histidine kinase-like ATPases BED35_12090 SM00388 His Kinase A (phosphoacceptor) domain BED35_12095 SM00448 cheY-homologous receiver domain BED35_12095 SM00862 Transcriptional regulatory protein, C terminal BED35_12120 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BED35_12120 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BED35_12135 SM00100 Cyclic nucleotide-monophosphate binding domain BED35_12135 SM00419 helix_turn_helix, cAMP Regulatory protein BED35_12155 SM00871 Bacterial transcription activator, effector binding domain BED35_12160 SM00822 BED35_12160 BED35_12205 SM00644 BED35_12205 BED35_12270 SM00421 helix_turn_helix, Lux Regulon BED35_12295 SM00354 helix_turn _helix lactose operon repressor BED35_12325 SM00342 helix_turn_helix, arabinose operon control protein BED35_12335 SM00382 ATPases associated with a variety of cellular activities BED35_12410 SM00342 helix_turn_helix, arabinose operon control protein BED35_12420 SM00900 BED35_12420 BED35_12430 SM00478 endonuclease III BED35_12430 SM00525 BED35_12430 BED35_12595 SM00382 ATPases associated with a variety of cellular activities BED35_12615 SM00530 Helix-turn-helix XRE-family like proteins BED35_12620 SM00530 Helix-turn-helix XRE-family like proteins BED35_12695 SM00357 Cold shock protein domain BED35_12695 SM00955 BED35_12695 BED35_12715 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_12715 SM01134 BED35_12715 BED35_12725 SM01007 Class II Aldolase and Adducin N-terminal domain BED35_12740 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BED35_12755 SM00530 Helix-turn-helix XRE-family like proteins BED35_12765 SM00028 Tetratricopeptide repeats BED35_12775 SM00014 Acid phosphatase homologues BED35_12800 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED35_12800 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED35_12800 SM00493 BED35_12800 BED35_12815 SM00822 BED35_12815 BED35_12830 SM00363 S4 RNA-binding domain BED35_12840 SM00481 DNA polymerase alpha chain like domain BED35_12875 SM00749 bacterial OsmY and nodulation domain BED35_12930 SM00155 Phospholipase D. Active site motifs. BED35_12940 SM00382 ATPases associated with a variety of cellular activities BED35_12945 SM00382 ATPases associated with a variety of cellular activities BED35_12990 SM00528 Domain in histone-like proteins of HNS family BED35_12995 SM00984 UDP binding domain BED35_13000 SM00448 cheY-homologous receiver domain BED35_13055 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED35_13055 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED35_13055 SM00493 BED35_13055 BED35_13075 SM00870 BED35_13075 BED35_13100 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED35_13115 SM00763 PrkA AAA domain BED35_13145 SM00052 Putative diguanylate phosphodiesterase BED35_13145 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED35_13145 SM00091 PAS domain BED35_13145 SM00267 diguanylate cyclase BED35_13155 SM01005 Alanine racemase, C-terminal domain BED35_13170 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_13210 SM00836 DALR anticodon binding domain BED35_13210 SM01016 Arginyl tRNA synthetase N terminal dom BED35_13290 SM00382 ATPases associated with a variety of cellular activities BED35_13340 SM01007 Class II Aldolase and Adducin N-terminal domain BED35_13350 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_13350 SM01134 BED35_13350 BED35_13355 SM00387 Histidine kinase-like ATPases BED35_13360 SM00448 cheY-homologous receiver domain BED35_13495 SM00479 BED35_13495 BED35_13510 SM01022 BED35_13510 BED35_13520 SM00487 DEAD-like helicases superfamily BED35_13520 SM00490 helicase superfamily c-terminal domain BED35_13555 SM01091 Transporter associated domain BED35_13590 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED35_13590 SM00091 PAS domain BED35_13590 SM00267 diguanylate cyclase BED35_13615 SM00357 Cold shock protein domain BED35_13660 SM00342 helix_turn_helix, arabinose operon control protein BED35_13680 SM00382 ATPases associated with a variety of cellular activities BED35_13685 SM00090 RIO-like kinase BED35_13700 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED35_13700 SM00091 PAS domain BED35_13700 SM00267 diguanylate cyclase BED35_13720 SM00342 helix_turn_helix, arabinose operon control protein BED35_13770 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED35_13770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_13780 SM00354 helix_turn _helix lactose operon repressor BED35_13785 SM00640 Glycosyl hydrolases family 32 BED35_13835 SM01329 BED35_13835 BED35_13870 SM00448 cheY-homologous receiver domain BED35_13870 SM00862 Transcriptional regulatory protein, C terminal BED35_13875 SM00387 Histidine kinase-like ATPases BED35_13875 SM00388 His Kinase A (phosphoacceptor) domain BED35_13905 SM00382 ATPases associated with a variety of cellular activities BED35_13915 SM00487 DEAD-like helicases superfamily BED35_13915 SM00490 helicase superfamily c-terminal domain BED35_13915 SM00982 BED35_13915 BED35_13915 SM01058 CarD-like/TRCF domain BED35_13980 SM00382 ATPases associated with a variety of cellular activities BED35_14020 SM00825 Beta-ketoacyl synthase BED35_14030 SM00822 BED35_14030 BED35_14035 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BED35_14065 SM00363 S4 RNA-binding domain BED35_14070 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_14100 SM00421 helix_turn_helix, Lux Regulon BED35_14110 SM00450 Rhodanese Homology Domain BED35_14135 SM00421 helix_turn_helix, Lux Regulon BED35_14135 SM00448 cheY-homologous receiver domain BED35_14195 SM01091 Transporter associated domain BED35_14210 SM00421 helix_turn_helix, Lux Regulon BED35_14280 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED35_14285 SM00992 Hemimethylated DNA-binding protein YccV like BED35_14290 SM00881 CoA binding domain BED35_14300 SM00851 MGS-like domain BED35_14355 SM00825 Beta-ketoacyl synthase BED35_14375 SM00382 ATPases associated with a variety of cellular activities BED35_14380 SM00981 BED35_14380 BED35_14430 SM00849 Metallo-beta-lactamase superfamily BED35_14485 SM00357 Cold shock protein domain BED35_14490 SM00357 Cold shock protein domain BED35_14495 SM01150 BED35_14495 BED35_14505 SM00382 ATPases associated with a variety of cellular activities BED35_14510 SM00849 Metallo-beta-lactamase superfamily BED35_14515 SM00411 bacterial (prokaryotic) histone like domain BED35_14520 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_14545 SM00870 BED35_14545 BED35_14595 SM00382 ATPases associated with a variety of cellular activities BED35_14605 SM00843 BED35_14605 BED35_14610 SM00344 helix_turn_helix ASNC type BED35_14620 SM00382 ATPases associated with a variety of cellular activities BED35_14625 SM00382 ATPases associated with a variety of cellular activities BED35_14635 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_14640 SM00382 ATPases associated with a variety of cellular activities BED35_14640 SM01086 C-terminal, D2-small domain, of ClpB protein BED35_14650 SM00357 Cold shock protein domain BED35_14655 SM00382 ATPases associated with a variety of cellular activities BED35_14720 SM00382 ATPases associated with a variety of cellular activities BED35_14725 SM00062 Bacterial periplasmic substrate-binding proteins BED35_14725 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED35_14740 SM00062 Bacterial periplasmic substrate-binding proteins BED35_14740 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED35_14765 SM00382 ATPases associated with a variety of cellular activities BED35_14800 SM00014 Acid phosphatase homologues BED35_14805 SM01133 BED35_14805 BED35_14810 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_14810 SM01134 BED35_14810 BED35_14830 SM00936 Penicillin-binding protein 5, C-terminal domain BED35_14835 SM00116 Domain in cystathionine beta-synthase and other proteins. BED35_14850 SM00382 ATPases associated with a variety of cellular activities BED35_14850 SM00930 BED35_14850 BED35_14880 SM00382 ATPases associated with a variety of cellular activities BED35_14915 SM00518 AP endonuclease family 2 BED35_14940 SM00862 Transcriptional regulatory protein, C terminal BED35_14985 SM00841 Elongation factor P, C-terminal BED35_14985 SM01185 BED35_14985 BED35_15005 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_15005 SM00895 BED35_15005 BED35_15015 SM00833 Cobalamin synthesis protein cobW C-terminal domain BED35_15020 SM00014 Acid phosphatase homologues BED35_15035 SM00052 Putative diguanylate phosphodiesterase BED35_15055 SM00382 ATPases associated with a variety of cellular activities BED35_15070 SM00363 S4 RNA-binding domain BED35_15075 SM00487 DEAD-like helicases superfamily BED35_15075 SM00490 helicase superfamily c-terminal domain BED35_15145 SM01057 Eukaryotic-type carbonic anhydrase BED35_15185 SM00530 Helix-turn-helix XRE-family like proteins BED35_15200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_15200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_15250 SM00387 Histidine kinase-like ATPases BED35_15250 SM00388 His Kinase A (phosphoacceptor) domain BED35_15255 SM00421 helix_turn_helix, Lux Regulon BED35_15255 SM00448 cheY-homologous receiver domain BED35_15260 SM00387 Histidine kinase-like ATPases BED35_15260 SM00388 His Kinase A (phosphoacceptor) domain BED35_15260 SM00448 cheY-homologous receiver domain BED35_15265 SM00434 DNA Topoisomerase IV BED35_15305 SM00852 Probable molybdopterin binding domain BED35_15320 SM01060 BED35_15320 BED35_15330 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED35_15380 SM00354 helix_turn _helix lactose operon repressor BED35_15445 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED35_15445 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED35_15450 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED35_15485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_15525 SM00354 helix_turn _helix lactose operon repressor BED35_15560 SM00052 Putative diguanylate phosphodiesterase BED35_15575 SM00382 ATPases associated with a variety of cellular activities BED35_15590 SM00062 Bacterial periplasmic substrate-binding proteins BED35_15635 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED35_15645 SM00342 helix_turn_helix, arabinose operon control protein BED35_15660 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_15700 SM00354 helix_turn _helix lactose operon repressor BED35_15740 SM00825 Beta-ketoacyl synthase BED35_15780 SM00463 Small MutS-related domain BED35_15855 SM00382 ATPases associated with a variety of cellular activities BED35_15890 SM00778 Zinc-binding domain of primase-helicase BED35_15960 SM00354 helix_turn _helix lactose operon repressor BED35_15965 SM00867 YceI-like domain BED35_15995 SM00382 ATPases associated with a variety of cellular activities BED35_16040 SM00382 ATPases associated with a variety of cellular activities BED35_16085 SM00448 cheY-homologous receiver domain BED35_16085 SM00850 LytTr DNA-binding domain BED35_16190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED35_16190 SM00292 breast cancer carboxy-terminal domain BED35_16190 SM00532 Ligase N family BED35_16195 SM00771 ZipA, C-terminal domain (FtsZ-binding) BED35_16225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_16225 SM00387 Histidine kinase-like ATPases BED35_16225 SM00388 His Kinase A (phosphoacceptor) domain BED35_16230 SM00448 cheY-homologous receiver domain BED35_16230 SM00862 Transcriptional regulatory protein, C terminal BED35_16240 SM00382 ATPases associated with a variety of cellular activities BED35_16250 SM00382 ATPases associated with a variety of cellular activities BED35_16295 SM01130 BED35_16295 BED35_16340 SM00919 Malic enzyme, NAD binding domain BED35_16340 SM01274 BED35_16340 BED35_16360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED35_16375 SM00421 helix_turn_helix, Lux Regulon BED35_16375 SM00448 cheY-homologous receiver domain BED35_16495 SM01130 BED35_16495 BED35_16560 SM00382 ATPases associated with a variety of cellular activities BED35_16595 SM00052 Putative diguanylate phosphodiesterase BED35_16595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED35_16595 SM00091 PAS domain BED35_16595 SM00267 diguanylate cyclase BED35_16625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_16625 SM00387 Histidine kinase-like ATPases BED35_16625 SM00388 His Kinase A (phosphoacceptor) domain BED35_16630 SM00448 cheY-homologous receiver domain BED35_16630 SM00862 Transcriptional regulatory protein, C terminal BED35_16645 SM00046 Diacylglycerol kinase catalytic domain (presumed) BED35_16675 SM00420 helix_turn_helix, Deoxyribose operon repressor BED35_16675 SM01134 BED35_16675 BED35_16680 SM00116 Domain in cystathionine beta-synthase and other proteins. BED35_16795 SM00116 Domain in cystathionine beta-synthase and other proteins. BED35_16795 SM01240 BED35_16795 BED35_16820 SM00382 ATPases associated with a variety of cellular activities BED35_16830 SM00564 beta-propeller repeat BED35_16850 SM00530 Helix-turn-helix XRE-family like proteins BED35_16855 SM00028 Tetratricopeptide repeats BED35_16865 SM00562 BED35_16865 BED35_16880 SM01359 BED35_16880 BED35_16880 SM01360 BED35_16880 BED35_16885 SM00869 Autotransporter beta-domain BED35_16915 SM00271 DnaJ molecular chaperone homology domain BED35_17010 SM00938 Nitrogen regulatory protein P-II BED35_17020 SM00382 ATPases associated with a variety of cellular activities BED35_17020 SM00448 cheY-homologous receiver domain BED35_17030 SM00387 Histidine kinase-like ATPases BED35_17030 SM00388 His Kinase A (phosphoacceptor) domain BED35_17040 SM01211 BED35_17040 BED35_17045 SM00062 Bacterial periplasmic substrate-binding proteins BED35_17105 SM00358 Double-stranded RNA binding motif BED35_17105 SM00535 Ribonuclease III family BED35_17155 SM00487 DEAD-like helicases superfamily BED35_17155 SM00490 helicase superfamily c-terminal domain BED35_17170 SM00248 ankyrin repeats BED35_17190 SM00986 Uracil DNA glycosylase superfamily BED35_17190 SM00987 UreE urease accessory protein, C-terminal domain BED35_17250 SM00342 helix_turn_helix, arabinose operon control protein BED35_17335 SM00988 UreE urease accessory protein, N-terminal domain BED35_17355 SM00382 ATPases associated with a variety of cellular activities BED35_17360 SM00382 ATPases associated with a variety of cellular activities BED35_17390 SM00450 Rhodanese Homology Domain BED35_17405 SM00357 Cold shock protein domain BED35_17430 SM00342 helix_turn_helix, arabinose operon control protein BED35_17450 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_17480 SM00382 ATPases associated with a variety of cellular activities BED35_17500 SM00479 BED35_17500 BED35_17515 SM00849 Metallo-beta-lactamase superfamily BED35_17520 SM00257 Lysin motif BED35_17595 SM00382 ATPases associated with a variety of cellular activities BED35_17595 SM00930 BED35_17595 BED35_17635 SM01322 BED35_17635 BED35_17655 SM00977 TilS substrate C-terminal domain BED35_17675 SM00481 DNA polymerase alpha chain like domain BED35_17705 SM00935 Outer membrane protein (OmpH-like) BED35_17715 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED35_17760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_17805 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED35_17805 SM00475 5'-3' exonuclease BED35_17850 SM00925 MltA specific insert domain BED35_17870 SM00646 BED35_17870 BED35_17930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED35_17945 SM00927 DNA mismatch repair enzyme MutH BED35_17965 SM00563 Phosphate acyltransferases BED35_17975 SM00354 helix_turn _helix lactose operon repressor BED35_18000 SM00849 Metallo-beta-lactamase superfamily BED35_18020 SM00862 Transcriptional regulatory protein, C terminal BED35_18070 SM00382 ATPases associated with a variety of cellular activities BED35_18090 SM00947 Carbonic anhydrase BED35_18100 SM00822 BED35_18100 BED35_18110 SM00271 DnaJ molecular chaperone homology domain BED35_18120 SM00091 PAS domain BED35_18120 SM00267 diguanylate cyclase BED35_18145 SM00530 Helix-turn-helix XRE-family like proteins BED35_18155 SM00530 Helix-turn-helix XRE-family like proteins BED35_18260 SM00937 BED35_18260 BED35_18290 SM00387 Histidine kinase-like ATPases BED35_18290 SM00388 His Kinase A (phosphoacceptor) domain BED35_18295 SM00448 cheY-homologous receiver domain BED35_18295 SM00862 Transcriptional regulatory protein, C terminal BED35_18330 SM00822 BED35_18330 BED35_18365 SM01011 Aminopeptidase P, N-terminal domain BED35_18390 SM01192 BED35_18390 BED35_18390 SM01193 BED35_18390 BED35_18405 SM00954 Region found in RelA / SpoT proteins BED35_18415 SM00073 Histidine Phosphotransfer domain BED35_18415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_18415 SM00387 Histidine kinase-like ATPases BED35_18415 SM00388 His Kinase A (phosphoacceptor) domain BED35_18415 SM00448 cheY-homologous receiver domain BED35_18420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED35_18425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_18475 SM00382 ATPases associated with a variety of cellular activities BED35_18485 SM00487 DEAD-like helicases superfamily BED35_18485 SM00490 helicase superfamily c-terminal domain BED35_18485 SM00847 Helicase associated domain (HA2) Add an annotation BED35_18545 SM00382 ATPases associated with a variety of cellular activities BED35_18550 SM00947 Carbonic anhydrase BED35_18630 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_18630 SM00895 BED35_18630 BED35_18645 SM00644 BED35_18645 BED35_18670 SM01240 BED35_18670 BED35_18695 SM00957 SecA DEAD-like domain BED35_18695 SM00958 SecA preprotein cross-linking domain BED35_18715 SM00864 Tubulin/FtsZ family, GTPase domain BED35_18715 SM00865 Tubulin/FtsZ family, C-terminal domain BED35_18720 SM00842 Cell division protein FtsA BED35_18795 SM00354 helix_turn _helix lactose operon repressor BED35_18820 SM00917 LeuA allosteric (dimerisation) domain BED35_18825 SM01329 BED35_18825 BED35_18890 SM00382 ATPases associated with a variety of cellular activities BED35_18900 SM00486 DNA polymerase type-B family BED35_18905 SM00487 DEAD-like helicases superfamily BED35_18905 SM00490 helicase superfamily c-terminal domain BED35_18910 SM00634 Bacterial Ig-like domain (group 1) BED35_18920 SM00271 DnaJ molecular chaperone homology domain BED35_18940 SM00650 Ribosomal RNA adenine dimethylases BED35_18975 SM00851 MGS-like domain BED35_18975 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED35_18980 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BED35_19010 SM00904 Riboflavin kinase BED35_19035 SM00271 DnaJ molecular chaperone homology domain BED35_19050 SM00247 Beta/gamma crystallins BED35_19060 SM00852 Probable molybdopterin binding domain BED35_19100 SM00448 cheY-homologous receiver domain BED35_19100 SM00862 Transcriptional regulatory protein, C terminal BED35_19110 SM00342 helix_turn_helix, arabinose operon control protein BED35_19110 SM00871 Bacterial transcription activator, effector binding domain BED35_19115 SM00855 Phosphoglycerate mutase family BED35_19135 SM00831 Cation transporter/ATPase, N-terminus BED35_19145 SM00267 diguanylate cyclase BED35_19155 SM00382 ATPases associated with a variety of cellular activities BED35_19170 SM00829 Enoylreductase BED35_19205 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BED35_19210 SM01133 BED35_19210 BED35_19235 SM00749 bacterial OsmY and nodulation domain BED35_19280 SM00267 diguanylate cyclase BED35_19310 SM00640 Glycosyl hydrolases family 32 BED35_19315 SM00354 helix_turn _helix lactose operon repressor BED35_19320 SM00091 PAS domain BED35_19370 SM01120 BED35_19370 BED35_19425 SM00382 ATPases associated with a variety of cellular activities BED35_19445 SM01133 BED35_19445 BED35_19555 SM00382 ATPases associated with a variety of cellular activities BED35_19560 SM00382 ATPases associated with a variety of cellular activities BED35_19590 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_19590 SM00866 BED35_19590 BED35_19615 SM00382 ATPases associated with a variety of cellular activities BED35_19620 SM00382 ATPases associated with a variety of cellular activities BED35_19665 SM00382 ATPases associated with a variety of cellular activities BED35_19755 SM00487 DEAD-like helicases superfamily BED35_19755 SM00490 helicase superfamily c-terminal domain BED35_19760 SM00028 Tetratricopeptide repeats BED35_19765 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_19765 SM00322 K homology RNA-binding domain BED35_19770 SM01387 BED35_19770 BED35_19785 SM00173 Ras subfamily of RAS small GTPases BED35_19790 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_19790 SM00322 K homology RNA-binding domain BED35_19825 SM00382 ATPases associated with a variety of cellular activities BED35_19835 SM01103 BED35_19835 BED35_19850 SM00448 cheY-homologous receiver domain BED35_19850 SM00862 Transcriptional regulatory protein, C terminal BED35_19855 SM00387 Histidine kinase-like ATPases BED35_19855 SM00388 His Kinase A (phosphoacceptor) domain BED35_19920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_19920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_19950 SM01091 Transporter associated domain BED35_20040 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED35_20045 SM00316 Ribosomal protein S1-like RNA-binding domain BED35_20045 SM00357 Cold shock protein domain BED35_20045 SM00955 BED35_20045 BED35_20055 SM00788 Adenylosuccinate synthetase BED35_20065 SM00244 prohibitin homologues BED35_20070 SM00244 prohibitin homologues BED35_20090 SM00853 MutL C terminal dimerisation domain BED35_20090 SM01340 BED35_20090 BED35_20095 SM00257 Lysin motif BED35_20095 SM00646 BED35_20095 BED35_20125 SM00479 BED35_20125 BED35_20185 SM00841 Elongation factor P, C-terminal BED35_20185 SM01185 BED35_20185 BED35_20210 SM00883 Chaperonin 10 Kd subunit BED35_20275 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_20315 SM00382 ATPases associated with a variety of cellular activities BED35_20355 SM00382 ATPases associated with a variety of cellular activities BED35_20360 SM00965 Secretin and TonB N terminus short domain BED35_20425 SM00382 ATPases associated with a variety of cellular activities BED35_20475 SM00342 helix_turn_helix, arabinose operon control protein BED35_20545 SM00421 helix_turn_helix, Lux Regulon BED35_20545 SM00448 cheY-homologous receiver domain BED35_20610 SM00798 AICARFT/IMPCHase bienzyme BED35_20610 SM00851 MGS-like domain BED35_20615 SM01209 BED35_20615 BED35_20615 SM01210 BED35_20615 BED35_20625 SM00411 bacterial (prokaryotic) histone like domain BED35_20680 SM00876 Biotin and Thiamin Synthesis associated domain BED35_20690 SM00663 RNA polymerase I subunit A N-terminus BED35_20715 SM00649 Ribosomal protein L11/L12 BED35_20720 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED35_20720 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED35_20850 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED35_20855 SM01004 Delta-aminolevulinic acid dehydratase BED35_20950 SM00382 ATPases associated with a variety of cellular activities BED35_21000 SM00382 ATPases associated with a variety of cellular activities BED35_21005 SM00382 ATPases associated with a variety of cellular activities BED35_21050 SM00382 ATPases associated with a variety of cellular activities BED35_21055 SM00382 ATPases associated with a variety of cellular activities BED35_21055 SM00962 SRP54-type protein, GTPase domain BED35_21055 SM00963 SRP54-type protein, helical bundle domain BED35_21150 SM00341 Helicase and RNase D C-terminal BED35_21150 SM00487 DEAD-like helicases superfamily BED35_21150 SM00490 helicase superfamily c-terminal domain BED35_21150 SM00956 BED35_21150 BED35_21220 SM01219 BED35_21220 BED35_21325 SM00984 UDP binding domain BED35_21350 SM00357 Cold shock protein domain BED35_21350 SM00382 ATPases associated with a variety of cellular activities BED35_21350 SM00959 Rho termination factor, N-terminal domain BED35_21360 SM00487 DEAD-like helicases superfamily BED35_21360 SM00490 helicase superfamily c-terminal domain BED35_21370 SM00060 Fibronectin type 3 domain BED35_21415 SM00778 Zinc-binding domain of primase-helicase BED35_21415 SM00885 D5 N terminal like BED35_21450 SM00342 helix_turn_helix, arabinose operon control protein BED35_21460 SM00382 ATPases associated with a variety of cellular activities BED35_21490 SM00342 helix_turn_helix, arabinose operon control protein BED35_21535 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED35_21550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_21550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_21550 SM01358 BED35_21550 BED35_21565 SM00966 SpoVT / AbrB like domain BED35_21575 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_21655 SM00642 Alpha-amylase domain BED35_21735 SM00448 cheY-homologous receiver domain BED35_21735 SM00862 Transcriptional regulatory protein, C terminal BED35_21740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_21740 SM00387 Histidine kinase-like ATPases BED35_21740 SM00388 His Kinase A (phosphoacceptor) domain BED35_21745 SM00342 helix_turn_helix, arabinose operon control protein BED35_21755 SM00971 Serine acetyltransferase, N-terminal BED35_21775 SM00450 Rhodanese Homology Domain BED35_21805 SM00829 Enoylreductase BED35_21845 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BED35_21845 SM01232 BED35_21845 BED35_21945 SM00778 Zinc-binding domain of primase-helicase BED35_21985 SM00849 Metallo-beta-lactamase superfamily BED35_21995 SM00052 Putative diguanylate phosphodiesterase BED35_21995 SM00091 PAS domain BED35_21995 SM00267 diguanylate cyclase BED35_22030 SM00072 Guanylate kinase homologues. BED35_22035 SM01409 BED35_22035 BED35_22040 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED35_22040 SM00954 Region found in RelA / SpoT proteins BED35_22050 SM00487 DEAD-like helicases superfamily BED35_22050 SM00490 helicase superfamily c-terminal domain BED35_22070 SM00421 helix_turn_helix, Lux Regulon BED35_22075 SM00421 helix_turn_helix, Lux Regulon BED35_22110 SM01230 BED35_22110 BED35_22120 SM00091 PAS domain BED35_22120 SM00387 Histidine kinase-like ATPases BED35_22120 SM00388 His Kinase A (phosphoacceptor) domain BED35_22125 SM00382 ATPases associated with a variety of cellular activities BED35_22125 SM00448 cheY-homologous receiver domain BED35_22130 SM00729 Elongator protein 3, MiaB family, Radical SAM BED35_22145 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED35_22145 SM00474 3'-5' exonuclease BED35_22145 SM00475 5'-3' exonuclease BED35_22145 SM00482 DNA polymerase A domain BED35_22205 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED35_22205 SM00895 BED35_22205 BED35_22215 SM00354 helix_turn _helix lactose operon repressor BED35_22235 SM00382 ATPases associated with a variety of cellular activities BED35_22250 SM00382 ATPases associated with a variety of cellular activities BED35_22255 SM00327 von Willebrand factor (vWF) type A domain BED35_22270 SM00344 helix_turn_helix ASNC type BED35_22280 SM01228 BED35_22280 BED35_22325 SM00382 ATPases associated with a variety of cellular activities BED35_22360 SM00382 ATPases associated with a variety of cellular activities BED35_22375 SM00062 Bacterial periplasmic substrate-binding proteins BED35_22405 SM00421 helix_turn_helix, Lux Regulon BED35_22405 SM00448 cheY-homologous receiver domain BED35_22410 SM00387 Histidine kinase-like ATPases BED35_22410 SM00388 His Kinase A (phosphoacceptor) domain BED35_22420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED35_22420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED35_22430 SM00382 ATPases associated with a variety of cellular activities BED35_22430 SM00930 BED35_22430 BED35_22455 SM01234 BED35_22455