locus-tag class description BED32_00005 PF07720 Tetratricopeptide repeat BED32_00015 PF05844 YopD protein BED32_00020 PF00872 Transposase, Mutator family BED32_00030 PF12468 Type III secretion system leucine rich repeat protein BED32_00030 PF12468 Type III secretion system leucine rich repeat protein BED32_00050 PF05932 Tir chaperone protein (CesT) family BED32_00055 PF03543 Yersinia/Haemophilus virulence surface antigen BED32_00070 PF05818 Enterobacterial TraT complement resistance protein BED32_00080 PF09632 Rac1-binding domain BED32_00080 PF00069 Protein kinase domain BED32_00095 PF01527 Transposase BED32_00100 PF00665 Integrase core domain BED32_00105 PF13700 Domain of unknown function (DUF4158) BED32_00105 PF01526 Tn3 transposase DDE domain BED32_00125 PF02387 IncFII RepA protein family BED32_00130 PF10723 Replication regulatory protein RepB BED32_00145 PF18272 single-stranded DNA binding TraI N-terminal subdomain BED32_00145 PF08751 TrwC relaxase BED32_00145 PF18340 DNA relaxase TraI 2B/2B-like domain BED32_00145 PF07057 DNA helicase TraI BED32_00160 PF03358 NADPH-dependent FMN reductase BED32_00165 PF01022 Bacterial regulatory protein, arsR family BED32_00175 PF03960 ArsC family BED32_00180 PF00239 Resolvase, N terminal domain BED32_00180 PF02796 Helix-turn-helix domain of resolvase BED32_00185 PF13700 Domain of unknown function (DUF4158) BED32_00185 PF13700 Domain of unknown function (DUF4158) BED32_00185 PF01526 Tn3 transposase DDE domain BED32_00185 PF01526 Tn3 transposase DDE domain BED32_00195 PF00892 EamA-like transporter family BED32_00200 PF03895 YadA-like membrane anchor domain BED32_00200 PF05658 Head domain of trimeric autotransporter adhesin BED32_00200 PF05662 Coiled stalk of trimeric autotransporter adhesin BED32_00215 PF09013 YopH, N-terminal BED32_00250 PF13614 AAA domain BED32_00255 PF02195 ParB-like nuclease domain BED32_00255 PF18090 Centromere-binding protein HTH domain BED32_00260 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BED32_00270 PF09020 YopE, N terminal BED32_00270 PF03545 Yersinia virulence determinant (YopE) BED32_00275 PF05932 Tir chaperone protein (CesT) family BED32_00280 PF01527 Transposase BED32_00295 PF09013 YopH, N-terminal BED32_00295 PF00102 Protein-tyrosine phosphatase BED32_00300 PF09013 YopH, N-terminal BED32_00305 PF02108 Flagellar assembly protein FliH BED32_00310 PF06578 YOP proteins translocation protein K (YscK) BED32_00315 PF01514 Secretory protein of YscJ/FliF family BED32_00320 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI BED32_00325 PF09025 YopR, type III needle-polymerisation regulator BED32_00330 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) BED32_00335 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF BED32_00340 PF08988 Type III secretion system, cytoplasmic E component of needle BED32_00345 PF16697 Inner membrane component of T3SS, cytoplasmic domain BED32_00345 PF16693 Inner membrane component of T3SS, periplasmic domain BED32_00355 PF05932 Tir chaperone protein (CesT) family BED32_00360 PF17551 Family of unknown function (DUF5463) BED32_00365 PF12833 Helix-turn-helix domain BED32_00375 PF01312 FlhB HrpN YscU SpaS Family BED32_00380 PF01311 Bacterial export proteins, family 1 BED32_00385 PF01313 Bacterial export proteins, family 3 BED32_00390 PF00813 FliP family BED32_00395 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED32_00400 PF02120 Flagellar hook-length control protein FliK BED32_00405 PF07321 Type III secretion protein YscO BED32_00415 PF07201 HrpJ-like domain BED32_00420 PF09059 TyeA BED32_00430 PF09474 Type III secretion system YscX (type_III_YscX) BED32_00440 PF00771 FHIPEP family BED32_00445 PF09621 Type III secretion system regulator (LcrR) BED32_00450 PF07216 LcrG protein BED32_00455 PF04792 V antigen (LcrV) protein BED32_00460 PF00308 Bacterial dnaA protein BED32_00460 PF11638 DnaA N-terminal domain BED32_00460 PF08299 Bacterial dnaA protein helix-turn-helix BED32_00465 PF02767 DNA polymerase III beta subunit, central domain BED32_00465 PF02768 DNA polymerase III beta subunit, C-terminal domain BED32_00465 PF00712 DNA polymerase III beta subunit, N-terminal domain BED32_00470 PF02463 RecF/RecN/SMC N terminal domain BED32_00475 PF00204 DNA gyrase B BED32_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_00475 PF01751 Toprim domain BED32_00475 PF00986 DNA gyrase B subunit, carboxyl terminus BED32_00475 PF18053 DNA gyrase B subunit insert domain BED32_00485 PF02423 Ornithine cyclodeaminase/mu-crystallin family BED32_00490 PF00291 Pyridoxal-phosphate dependent enzyme BED32_00495 PF12566 Protein of unknown function (DUF3748) BED32_00495 PF07676 WD40-like Beta Propeller Repeat BED32_00500 PF07119 Protein of unknown function (DUF1375) BED32_00505 PF00011 Hsp20/alpha crystallin family BED32_00510 PF00011 Hsp20/alpha crystallin family BED32_00515 PF02371 Transposase IS116/IS110/IS902 family BED32_00515 PF01548 Transposase BED32_00525 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED32_00525 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED32_00530 PF00230 Major intrinsic protein BED32_00540 PF06005 Cell division protein ZapB BED32_00545 PF03737 Aldolase/RraA BED32_00550 PF01040 UbiA prenyltransferase family BED32_00555 PF07724 AAA domain (Cdc48 subfamily) BED32_00555 PF00004 ATPase family associated with various cellular activities (AAA) BED32_00555 PF10431 C-terminal, D2-small domain, of ClpB protein BED32_00560 PF00227 Proteasome subunit BED32_00565 PF05036 Sporulation related domain BED32_00570 PF00356 Bacterial regulatory proteins, lacI family BED32_00575 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BED32_00575 PF00270 DEAD/DEAH box helicase BED32_00575 PF18074 Primosomal protein N C-terminal domain BED32_00575 PF17764 3′ DNA-binding domain (3′BD) BED32_00575 PF00271 Helicase conserved C-terminal domain BED32_00580 PF01197 Ribosomal protein L31 BED32_00585 PF01340 Met Apo-repressor, MetJ BED32_00595 PF00696 Amino acid kinase family BED32_00595 PF03447 Homoserine dehydrogenase, NAD binding domain BED32_00595 PF00742 Homoserine dehydrogenase BED32_00600 PF02219 Methylenetetrahydrofolate reductase BED32_00605 PF00311 Phosphoenolpyruvate carboxylase BED32_00610 PF07687 Peptidase dimerisation domain BED32_00610 PF01546 Peptidase family M20/M25/M40 BED32_00615 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED32_00615 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED32_00620 PF00696 Amino acid kinase family BED32_00625 PF14698 Argininosuccinate lyase C-terminal BED32_00625 PF00206 Lyase BED32_00655 PF00664 ABC transporter transmembrane region BED32_00655 PF00005 ABC transporter BED32_00660 PF00529 HlyD membrane-fusion protein of T1SS BED32_00680 PF08534 Redoxin BED32_00680 PF00462 Glutaredoxin BED32_00685 PF03466 LysR substrate binding domain BED32_00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_00690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED32_00690 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_00695 PF00440 Bacterial regulatory proteins, tetR family BED32_00700 PF07226 Protein of unknown function (DUF1422) BED32_00705 PF05958 tRNA (Uracil-5-)-methyltransferase BED32_00710 PF00593 TonB dependent receptor BED32_00710 PF07715 TonB-dependent Receptor Plug Domain BED32_00715 PF01177 Asp/Glu/Hydantoin racemase BED32_00755 PF13407 Periplasmic binding protein domain BED32_00760 PF00005 ABC transporter BED32_00765 PF02653 Branched-chain amino acid transport system / permease component BED32_00770 PF02653 Branched-chain amino acid transport system / permease component BED32_00775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_00775 PF03466 LysR substrate binding domain BED32_00780 PF04219 Protein of unknown function, DUF BED32_00785 PF13335 Magnesium chelatase, subunit ChlI C-terminal BED32_00785 PF01078 Magnesium chelatase, subunit ChlI BED32_00790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_00790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_00790 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_00800 PF01063 Amino-transferase class IV BED32_00805 PF00920 Dehydratase family BED32_00810 PF00291 Pyridoxal-phosphate dependent enzyme BED32_00810 PF00585 C-terminal regulatory domain of Threonine dehydratase BED32_00825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_00825 PF03466 LysR substrate binding domain BED32_00830 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BED32_00830 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BED32_00840 PF01320 Colicin immunity protein / pyocin immunity protein BED32_00845 PF01320 Colicin immunity protein / pyocin immunity protein BED32_00855 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_00855 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_00875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_00875 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_00880 PF13592 Winged helix-turn helix BED32_00880 PF13358 DDE superfamily endonuclease BED32_00890 PF00356 Bacterial regulatory proteins, lacI family BED32_00905 PF06755 CbtA_toxin of type IV toxin-antitoxin system BED32_00915 PF00872 Transposase, Mutator family BED32_00920 PF12146 Serine aminopeptidase, S33 BED32_00925 PF13018 Extended Signal Peptide of Type V secretion system BED32_00925 PF04829 Pre-toxin domain with VENN motif BED32_00925 PF13332 Hemagglutinin repeat BED32_00925 PF05860 haemagglutination activity domain BED32_00955 PF07730 Histidine kinase BED32_00955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_00955 PF05231 MASE1 BED32_00960 PF00072 Response regulator receiver domain BED32_00960 PF00196 Bacterial regulatory proteins, luxR family BED32_00965 PF00884 Sulfatase BED32_00965 PF08019 Phosphoethanolamine transferase EptA/EptB BED32_00970 PF02566 OsmC-like protein BED32_00975 PF01548 Transposase BED32_00975 PF02371 Transposase IS116/IS110/IS902 family BED32_00980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_00985 PF00528 Binding-protein-dependent transport system inner membrane component BED32_00990 PF00528 Binding-protein-dependent transport system inner membrane component BED32_00990 PF12911 N-terminal TM domain of oligopeptide transport permease C BED32_00995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_00995 PF00005 ABC transporter BED32_01000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_01000 PF00005 ABC transporter BED32_01005 PF11658 Cellulose biosynthesis protein BcsG BED32_01010 PF11120 Cellulose biosynthesis protein BcsF BED32_01015 PF10995 Cellulose biosynthesis GIL BED32_01025 PF06564 Cellulose biosynthesis protein BcsQ BED32_01030 PF00535 Glycosyl transferase family 2 BED32_01030 PF03552 Cellulose synthase BED32_01030 PF07238 PilZ domain BED32_01035 PF03170 Bacterial cellulose synthase subunit BED32_01040 PF01270 Glycosyl hydrolases family 8 BED32_01045 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BED32_01055 PF00563 EAL domain BED32_01055 PF00672 HAMP domain BED32_01055 PF00990 Diguanylate cyclase, GGDEF domain BED32_01055 PF17154 Gammaproteobacterial periplasmic sensor domain BED32_01060 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED32_01065 PF06917 Periplasmic pectate lyase BED32_01075 PF00375 Sodium:dicarboxylate symporter family BED32_01080 PF00675 Insulinase (Peptidase family M16) BED32_01080 PF05193 Peptidase M16 inactive domain BED32_01085 PF00294 pfkB family carbohydrate kinase BED32_01090 PF01361 Tautomerase enzyme BED32_01095 PF00563 EAL domain BED32_01105 PF02611 CDP-diacylglycerol pyrophosphatase BED32_01110 PF03631 Virulence factor BrkB BED32_01115 PF03797 Autotransporter beta-domain BED32_01120 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_01120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED32_01125 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BED32_01130 PF01432 Peptidase family M3 BED32_01135 PF04445 Putative SAM-dependent methyltransferase BED32_01140 PF00413 Matrixin BED32_01140 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BED32_01140 PF08548 Peptidase M10 serralysin C terminal BED32_01145 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BED32_01145 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED32_01150 PF00582 Universal stress protein family BED32_01155 PF02371 Transposase IS116/IS110/IS902 family BED32_01155 PF01548 Transposase BED32_01160 PF10625 Universal stress protein B (UspB) BED32_01165 PF01384 Phosphate transporter family BED32_01175 PF08721 TnsA endonuclease C terminal BED32_01175 PF08722 TnsA endonuclease N terminal BED32_01180 PF00665 Integrase core domain BED32_01185 PF11426 Tn7 transposition regulator TnsC BED32_01185 PF13401 AAA domain BED32_01210 PF13610 DDE domain BED32_01215 PF00004 ATPase family associated with various cellular activities (AAA) BED32_01215 PF02190 ATP-dependent protease La (LON) substrate-binding domain BED32_01215 PF05362 Lon protease (S16) C-terminal proteolytic domain BED32_01235 PF00375 Sodium:dicarboxylate symporter family BED32_01250 PF05034 Methylaspartate ammonia-lyase N-terminus BED32_01250 PF07476 Methylaspartate ammonia-lyase C-terminus BED32_01255 PF06368 Methylaspartate mutase E chain (MutE) BED32_01270 PF00288 GHMP kinases N terminal domain BED32_01275 PF14824 Sirohaem biosynthesis protein central BED32_01275 PF10414 Sirohaem synthase dimerisation region BED32_01275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_01280 PF03466 LysR substrate binding domain BED32_01280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_01285 PF05681 Fumarate hydratase (Fumerase) BED32_01285 PF05683 Fumarase C-terminus BED32_01305 PF03466 LysR substrate binding domain BED32_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_01310 PF07690 Major Facilitator Superfamily BED32_01315 PF00171 Aldehyde dehydrogenase family BED32_01320 PF04962 KduI/IolB family BED32_01330 PF00294 pfkB family carbohydrate kinase BED32_01335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_01335 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_01335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_01340 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED32_01340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED32_01345 PF01261 Xylose isomerase-like TIM barrel BED32_01350 PF00583 Acetyltransferase (GNAT) family BED32_01355 PF02678 Pirin BED32_01355 PF17954 Quercetinase C-terminal cupin domain BED32_01360 PF00356 Bacterial regulatory proteins, lacI family BED32_01360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_01365 PF02447 GntP family permease BED32_01370 PF01202 Shikimate kinase BED32_01375 PF01914 MarC family integral membrane protein BED32_01380 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED32_01380 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED32_01385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_01385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_01385 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_01390 PF03306 Alpha-acetolactate decarboxylase BED32_01395 PF03466 LysR substrate binding domain BED32_01395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_01400 PF06580 Histidine kinase BED32_01400 PF07694 5TMR of 5TMR-LYT BED32_01405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED32_01405 PF02806 Alpha amylase, C-terminal all-beta domain BED32_01405 PF00128 Alpha amylase, catalytic domain BED32_01410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED32_01410 PF00128 Alpha amylase, catalytic domain BED32_01410 PF18390 Glycogen debranching enzyme C-terminal domain BED32_01415 PF00483 Nucleotidyl transferase BED32_01420 PF08323 Starch synthase catalytic domain BED32_01420 PF00534 Glycosyl transferases group 1 BED32_01425 PF00343 Carbohydrate phosphorylase BED32_01430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BED32_01430 PF01266 FAD dependent oxidoreductase BED32_01440 PF01548 Transposase BED32_01440 PF02371 Transposase IS116/IS110/IS902 family BED32_01445 PF08220 DeoR-like helix-turn-helix domain BED32_01445 PF00455 DeoR C terminal sensor domain BED32_01450 PF01694 Rhomboid family BED32_01450 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BED32_01455 PF00581 Rhodanese-like domain BED32_01465 PF00196 Bacterial regulatory proteins, luxR family BED32_01465 PF17874 MalT-like TPR region BED32_01470 PF00343 Carbohydrate phosphorylase BED32_01475 PF02446 4-alpha-glucanotransferase BED32_01480 PF01521 Iron-sulphur cluster biosynthesis BED32_01480 PF01106 NifU-like domain BED32_01485 PF00156 Phosphoribosyl transferase domain BED32_01490 PF00561 alpha/beta hydrolase fold BED32_01495 PF07338 Protein of unknown function (DUF1471) BED32_01500 PF01548 Transposase BED32_01500 PF02371 Transposase IS116/IS110/IS902 family BED32_01505 PF09012 FeoC like transcriptional regulator BED32_01510 PF07670 Nucleoside recognition BED32_01510 PF07664 Ferrous iron transport protein B C terminus BED32_01510 PF02421 Ferrous iron transport protein B BED32_01510 PF17910 FeoB cytosolic helical domain BED32_01515 PF04023 FeoA domain BED32_01520 PF00575 S1 RNA binding domain BED32_01520 PF09371 Tex-like protein N-terminal domain BED32_01520 PF16921 Tex protein YqgF-like domain BED32_01520 PF17674 HHH domain BED32_01545 PF03449 Transcription elongation factor, N-terminal BED32_01545 PF01272 Transcription elongation factor, GreA/GreB, C-term BED32_01550 PF00486 Transcriptional regulatory protein, C terminal BED32_01550 PF00072 Response regulator receiver domain BED32_01555 PF00672 HAMP domain BED32_01555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_01555 PF00512 His Kinase A (phospho-acceptor) domain BED32_01560 PF01293 Phosphoenolpyruvate carboxykinase BED32_01565 PF01430 Hsp33 protein BED32_01570 PF01479 S4 domain BED32_01575 PF13419 Haloacid dehalogenase-like hydrolase BED32_01580 PF07095 Intracellular growth attenuator protein IgaA BED32_01585 PF00293 NUDIX domain BED32_01590 PF17092 Penicillin-binding protein OB-like domain BED32_01590 PF00905 Penicillin binding protein transpeptidase domain BED32_01590 PF00912 Transglycosylase BED32_01615 PF03958 Bacterial type II/III secretion system short domain BED32_01615 PF00263 Bacterial type II and III secretion system protein BED32_01620 PF01202 Shikimate kinase BED32_01625 PF01761 3-dehydroquinate synthase BED32_01630 PF05036 Sporulation related domain BED32_01635 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED32_01640 PF00834 Ribulose-phosphate 3 epimerase family BED32_01650 PF00579 tRNA synthetases class I (W and Y) BED32_01655 PF10414 Sirohaem synthase dimerisation region BED32_01655 PF14824 Sirohaem biosynthesis protein central BED32_01655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_01665 PF13806 Rieske-like [2Fe-2S] domain BED32_01670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED32_01670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED32_01670 PF18267 Rubredoxin NAD+ reductase C-terminal domain BED32_01670 PF04324 BFD-like [2Fe-2S] binding domain BED32_01670 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_01675 PF07969 Amidohydrolase family BED32_01680 PF07690 Major Facilitator Superfamily BED32_01685 PF00356 Bacterial regulatory proteins, lacI family BED32_01690 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED32_01690 PF02056 Family 4 glycosyl hydrolase BED32_01695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED32_01700 PF05872 Bacterial protein of unknown function (DUF853) BED32_01705 PF00117 Glutamine amidotransferase class-I BED32_01710 PF00202 Aminotransferase class-III BED32_01720 PF13545 Crp-like helix-turn-helix domain BED32_01720 PF00027 Cyclic nucleotide-binding domain BED32_01725 PF02566 OsmC-like protein BED32_01730 PF00485 Phosphoribulokinase / Uridine kinase family BED32_01735 PF06794 Uncharacterised protein family (UPF0270) BED32_01740 PF00561 alpha/beta hydrolase fold BED32_01745 PF01810 LysE type translocator BED32_01750 PF02567 Phenazine biosynthesis-like protein BED32_01755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED32_01765 PF00528 Binding-protein-dependent transport system inner membrane component BED32_01770 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BED32_01780 PF00535 Glycosyl transferase family 2 BED32_01785 PF12848 ABC transporter BED32_01785 PF00005 ABC transporter BED32_01790 PF02525 Flavodoxin-like fold BED32_01795 PF02254 TrkA-N domain BED32_01795 PF00999 Sodium/hydrogen exchanger family BED32_01800 PF09526 Probable metal-binding protein (DUF2387) BED32_01805 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED32_01810 PF04102 SlyX BED32_01815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED32_01815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED32_01820 PF08348 YheO-like PAS domain BED32_01820 PF13309 HTH domain BED32_01825 PF02635 DsrE/DsrF-like family BED32_01830 PF02635 DsrE/DsrF-like family BED32_01835 PF04077 DsrH like protein BED32_01840 PF00164 Ribosomal protein S12/S23 BED32_01845 PF00177 Ribosomal protein S7p/S5e BED32_01850 PF03144 Elongation factor Tu domain 2 BED32_01850 PF14492 Elongation Factor G, domain II BED32_01850 PF03764 Elongation factor G, domain IV BED32_01850 PF00679 Elongation factor G C-terminus BED32_01850 PF00009 Elongation factor Tu GTP binding domain BED32_01860 PF04324 BFD-like [2Fe-2S] binding domain BED32_01865 PF00210 Ferritin-like domain BED32_01870 PF00338 Ribosomal protein S10p/S20e BED32_01875 PF00297 Ribosomal protein L3 BED32_01880 PF00573 Ribosomal protein L4/L1 family BED32_01885 PF00276 Ribosomal protein L23 BED32_01890 PF00181 Ribosomal Proteins L2, RNA binding domain BED32_01890 PF03947 Ribosomal Proteins L2, C-terminal domain BED32_01895 PF00203 Ribosomal protein S19 BED32_01900 PF00237 Ribosomal protein L22p/L17e BED32_01905 PF00189 Ribosomal protein S3, C-terminal domain BED32_01905 PF07650 KH domain BED32_01910 PF00252 Ribosomal protein L16p/L10e BED32_01915 PF00831 Ribosomal L29 protein BED32_01920 PF00366 Ribosomal protein S17 BED32_01925 PF00238 Ribosomal protein L14p/L23e BED32_01930 PF00467 KOW motif BED32_01930 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BED32_01935 PF00281 Ribosomal protein L5 BED32_01935 PF00673 ribosomal L5P family C-terminus BED32_01940 PF00253 Ribosomal protein S14p/S29e BED32_01945 PF00410 Ribosomal protein S8 BED32_01950 PF00347 Ribosomal protein L6 BED32_01955 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BED32_01960 PF03719 Ribosomal protein S5, C-terminal domain BED32_01960 PF00333 Ribosomal protein S5, N-terminal domain BED32_01965 PF00327 Ribosomal protein L30p/L7e BED32_01970 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BED32_01975 PF00344 SecY translocase BED32_01980 PF00444 Ribosomal protein L36 BED32_01990 PF00411 Ribosomal protein S11 BED32_01995 PF00163 Ribosomal protein S4/S9 N-terminal domain BED32_01995 PF01479 S4 domain BED32_02000 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BED32_02000 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BED32_02000 PF01000 RNA polymerase Rpb3/RpoA insert domain BED32_02005 PF01196 Ribosomal protein L17 BED32_02010 PF09350 Domain of unknown function (DUF1992) BED32_02015 PF13411 MerR HTH family regulatory protein BED32_02020 PF03889 Alternative ribosome-rescue factor A BED32_02030 PF01741 Large-conductance mechanosensitive channel, MscL BED32_02035 PF02080 TrkA-C domain BED32_02035 PF02254 TrkA-N domain BED32_02040 PF01189 16S rRNA methyltransferase RsmB/F BED32_02040 PF01029 NusB family BED32_02045 PF02911 Formyl transferase, C-terminal domain BED32_02045 PF00551 Formyl transferase BED32_02050 PF01327 Polypeptide deformylase BED32_02055 PF02481 DNA recombination-mediator protein A BED32_02055 PF17782 DprA winged helix domain BED32_02060 PF04361 Protein of unknown function (DUF494) BED32_02065 PF01396 Topoisomerase DNA binding C4 zinc finger BED32_02070 PF01300 Telomere recombination BED32_02075 PF08501 Shikimate dehydrogenase substrate binding domain BED32_02075 PF01488 Shikimate / quinate 5-dehydrogenase BED32_02075 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BED32_02080 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_02110 PF02371 Transposase IS116/IS110/IS902 family BED32_02110 PF01548 Transposase BED32_02115 PF04204 Homoserine O-succinyltransferase BED32_02120 PF01274 Malate synthase BED32_02125 PF00463 Isocitrate lyase family BED32_02130 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BED32_02135 PF09339 IclR helix-turn-helix domain BED32_02135 PF01614 Bacterial transcriptional regulator BED32_02140 PF02965 Vitamin B12 dependent methionine synthase, activation domain BED32_02140 PF02574 Homocysteine S-methyltransferase BED32_02140 PF02607 B12 binding domain BED32_02140 PF02310 B12 binding domain BED32_02140 PF00809 Pterin binding enzyme BED32_02145 PF13332 Hemagglutinin repeat BED32_02145 PF05860 haemagglutination activity domain BED32_02150 PF17287 POTRA domain BED32_02150 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED32_02150 PF08479 POTRA domain, ShlB-type BED32_02155 PF01758 Sodium Bile acid symporter family BED32_02160 PF00696 Amino acid kinase family BED32_02160 PF01842 ACT domain BED32_02165 PF00342 Phosphoglucose isomerase BED32_02170 PF06146 Phosphate-starvation-inducible E BED32_02175 PF02371 Transposase IS116/IS110/IS902 family BED32_02175 PF01548 Transposase BED32_02180 PF00528 Binding-protein-dependent transport system inner membrane component BED32_02190 PF01547 Bacterial extracellular solute-binding protein BED32_02195 PF17912 MalK OB fold domain BED32_02195 PF00005 ABC transporter BED32_02200 PF02264 LamB porin BED32_02205 PF07148 Maltose operon periplasmic protein precursor (MalM) BED32_02215 PF04345 Chorismate lyase BED32_02220 PF01040 UbiA prenyltransferase family BED32_02225 PF01553 Acyltransferase BED32_02230 PF01219 Prokaryotic diacylglycerol kinase BED32_02235 PF00717 Peptidase S24-like BED32_02235 PF01726 LexA DNA binding domain BED32_02240 PF05532 CsbD-like BED32_02245 PF01475 Ferric uptake regulator family BED32_02250 PF01757 Acyltransferase family BED32_02255 PF01207 Dihydrouridine synthase (Dus) BED32_02260 PF09583 Phage shock protein G (Phageshock_PspG) BED32_02270 PF08240 Alcohol dehydrogenase GroES-like domain BED32_02270 PF00107 Zinc-binding dehydrogenase BED32_02275 PF00772 DnaB-like helicase N terminal domain BED32_02275 PF03796 DnaB-like helicase C terminal domain BED32_02285 PF00155 Aminotransferase class I and II BED32_02290 PF04237 YjbR BED32_02295 PF00005 ABC transporter BED32_02295 PF17755 UvrA DNA-binding domain BED32_02295 PF17760 UvrA interaction domain BED32_02300 PF00436 Single-strand binding protein family BED32_02305 PF07804 HipA-like C-terminal domain BED32_02305 PF13657 HipA N-terminal domain BED32_02320 PF00860 Permease family BED32_02325 PF00999 Sodium/hydrogen exchanger family BED32_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_02330 PF03466 LysR substrate binding domain BED32_02335 PF03788 LrgA family BED32_02345 PF00005 ABC transporter BED32_02350 PF00528 Binding-protein-dependent transport system inner membrane component BED32_02355 PF00528 Binding-protein-dependent transport system inner membrane component BED32_02360 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_02370 PF01548 Transposase BED32_02370 PF02371 Transposase IS116/IS110/IS902 family BED32_02375 PF03279 Bacterial lipid A biosynthesis acyltransferase BED32_02380 PF00939 Sodium:sulfate symporter transmembrane region BED32_02385 PF00313 'Cold-shock' DNA-binding domain BED32_02390 PF00313 'Cold-shock' DNA-binding domain BED32_02395 PF05433 Glycine zipper 2TM domain BED32_02405 PF02954 Bacterial regulatory protein, Fis family BED32_02410 PF01207 Dihydrouridine synthase (Dus) BED32_02420 PF00474 Sodium:solute symporter family BED32_02425 PF06196 Protein of unknown function (DUF997) BED32_02430 PF02785 Biotin carboxylase C-terminal domain BED32_02430 PF00289 Biotin carboxylase, N-terminal domain BED32_02430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED32_02435 PF00364 Biotin-requiring enzyme BED32_02440 PF01220 Dehydroquinase class II BED32_02445 PF01794 Ferric reductase like transmembrane component BED32_02450 PF00174 Oxidoreductase molybdopterin binding domain BED32_02455 PF00107 Zinc-binding dehydrogenase BED32_02455 PF08240 Alcohol dehydrogenase GroES-like domain BED32_02460 PF00563 EAL domain BED32_02460 PF00990 Diguanylate cyclase, GGDEF domain BED32_02460 PF17157 Gammaproteobacterial periplasmic sensor domain BED32_02470 PF04085 rod shape-determining protein MreC BED32_02475 PF04093 rod shape-determining protein MreD BED32_02480 PF02545 Maf-like protein BED32_02485 PF10150 Ribonuclease E/G family BED32_02485 PF00575 S1 RNA binding domain BED32_02490 PF13116 Protein of unknown function BED32_02490 PF13502 AsmA-like C-terminal region BED32_02495 PF00795 Carbon-nitrogen hydrolase BED32_02500 PF01523 Putative modulator of DNA gyrase BED32_02535 PF12256 Insecticide toxin TcdB middle/N-terminal region BED32_02535 PF03534 Salmonella virulence plasmid 65kDa B protein BED32_02535 PF12255 Insecticide toxin TcdB middle/C-terminal region BED32_02540 PF18413 Neuraminidase-like domain BED32_02540 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain BED32_02555 PF03466 LysR substrate binding domain BED32_02555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_02560 PF07869 Protein of unknown function (DUF1656) BED32_02565 PF13533 Biotin-lipoyl like BED32_02570 PF04632 Fusaric acid resistance protein family BED32_02575 PF00171 Aldehyde dehydrogenase family BED32_02585 PF01337 Barstar (barnase inhibitor) BED32_02590 PF04751 Protein of unknown function (DUF615) BED32_02595 PF00589 Phage integrase family BED32_02595 PF02899 Phage integrase, N-terminal SAM-like domain BED32_02625 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED32_02635 PF05840 Bacteriophage replication gene A protein (GPA) BED32_02770 PF01523 Putative modulator of DNA gyrase BED32_02775 PF01548 Transposase BED32_02775 PF02371 Transposase IS116/IS110/IS902 family BED32_02780 PF07361 Cytochrome b562 BED32_02785 PF14760 Rnk N-terminus BED32_02785 PF01272 Transcription elongation factor, GreA/GreB, C-term BED32_02815 PF01979 Amidohydrolase family BED32_02820 PF03841 L-seryl-tRNA selenium transferase BED32_02825 PF07071 KDGP aldolase BED32_02835 PF08279 HTH domain BED32_02835 PF05043 Mga helix-turn-helix domain BED32_02835 PF00874 PRD domain BED32_02835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_02840 PF01381 Helix-turn-helix BED32_02845 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BED32_02855 PF00356 Bacterial regulatory proteins, lacI family BED32_02865 PF00128 Alpha amylase, catalytic domain BED32_02865 PF11941 Domain of unknown function (DUF3459) BED32_02880 PF04168 A predicted alpha-helical domain with a conserved ER motif. BED32_02880 PF14403 Circularly permuted ATP-grasp type 2 BED32_02885 PF14403 Circularly permuted ATP-grasp type 2 BED32_02890 PF01042 Endoribonuclease L-PSP BED32_02895 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BED32_02895 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BED32_02900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED32_02900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED32_02905 PF00381 PTS HPr component phosphorylation site BED32_02910 PF03668 P-loop ATPase protein family BED32_02915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_02920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED32_02925 PF00309 Sigma-54 factor, Activator interacting domain (AID) BED32_02925 PF04963 Sigma-54 factor, core binding domain BED32_02925 PF04552 Sigma-54, DNA binding domain BED32_02930 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED32_02930 PF00005 ABC transporter BED32_02935 PF03968 OstA-like protein BED32_02940 PF06835 Lipopolysaccharide-assembly, LptC-related BED32_02950 PF01380 SIS domain BED32_02950 PF00571 CBS domain BED32_02960 PF00005 ABC transporter BED32_02965 PF02405 Permease MlaE BED32_02970 PF02470 MlaD protein BED32_02975 PF05494 MlaC protein BED32_02980 PF13466 STAS domain BED32_02985 PF01722 BolA-like protein BED32_02990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED32_02995 PF13180 PDZ domain BED32_03000 PF00595 PDZ domain BED32_03000 PF13180 PDZ domain BED32_03005 PF06295 Protein of unknown function (DUF1043) BED32_03010 PF03969 AFG1-like ATPase BED32_03015 PF00572 Ribosomal protein L13 BED32_03020 PF00380 Ribosomal protein S9/S16 BED32_03025 PF00043 Glutathione S-transferase, C-terminal domain BED32_03025 PF02798 Glutathione S-transferase, N-terminal domain BED32_03030 PF04386 Stringent starvation protein B BED32_03045 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_03045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BED32_03050 PF01645 Conserved region in glutamate synthase BED32_03050 PF01493 GXGXG motif BED32_03050 PF04898 Glutamate synthase central domain BED32_03050 PF00310 Glutamine amidotransferases class-II BED32_03055 PF04055 Radical SAM superfamily BED32_03055 PF16199 Radical_SAM C-terminal domain BED32_03060 PF00072 Response regulator receiver domain BED32_03060 PF00512 His Kinase A (phospho-acceptor) domain BED32_03060 PF18415 Histidine kinase receptor ArcB trans-membrane domain BED32_03060 PF00989 PAS fold BED32_03060 PF01627 Hpt domain BED32_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_03070 PF00912 Transglycosylase BED32_03075 PF04972 BON domain BED32_03080 PF13580 SIS domain BED32_03085 PF02021 Uncharacterised protein family UPF0102 BED32_03090 PF04348 LppC putative lipoprotein BED32_03095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_03115 PF00239 Resolvase, N terminal domain BED32_03115 PF02796 Helix-turn-helix domain of resolvase BED32_03125 PF00145 C-5 cytosine-specific DNA methylase BED32_03135 PF01381 Helix-turn-helix BED32_03150 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_03150 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_03155 PF13954 PapC N-terminal domain BED32_03155 PF00577 Outer membrane usher protein BED32_03155 PF13953 PapC C-terminal domain BED32_03165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_03165 PF03466 LysR substrate binding domain BED32_03170 PF00248 Aldo/keto reductase family BED32_03175 PF00107 Zinc-binding dehydrogenase BED32_03175 PF08240 Alcohol dehydrogenase GroES-like domain BED32_03180 PF02678 Pirin BED32_03180 PF17954 Quercetinase C-terminal cupin domain BED32_03185 PF03466 LysR substrate binding domain BED32_03185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_03190 PF13409 Glutathione S-transferase, N-terminal domain BED32_03195 PF07681 DoxX BED32_03200 PF13997 YqjK-like protein BED32_03205 PF07332 Putative Actinobacterial Holin-X, holin superfamily III BED32_03210 PF05957 Bacterial protein of unknown function (DUF883) BED32_03220 PF13721 SecD export protein N-terminal TM region BED32_03225 PF09335 SNARE associated Golgi protein BED32_03235 PF07729 FCD domain BED32_03235 PF00392 Bacterial regulatory proteins, gntR family BED32_03245 PF02614 Glucuronate isomerase BED32_03250 PF08125 Mannitol dehydrogenase C-terminal domain BED32_03250 PF01232 Mannitol dehydrogenase Rossmann domain BED32_03255 PF08666 SAF domain BED32_03255 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BED32_03260 PF10688 Bacterial inner membrane protein BED32_03265 PF00375 Sodium:dicarboxylate symporter family BED32_03270 PF03741 Integral membrane protein TerC family BED32_03280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED32_03285 PF01863 Protein of unknown function DUF45 BED32_03300 PF03797 Autotransporter beta-domain BED32_03305 PF05175 Methyltransferase small domain BED32_03310 PF02371 Transposase IS116/IS110/IS902 family BED32_03310 PF01548 Transposase BED32_03315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BED32_03315 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_03320 PF00892 EamA-like transporter family BED32_03325 PF03729 Short repeat of unknown function (DUF308) BED32_03335 PF00282 Pyridoxal-dependent decarboxylase conserved domain BED32_03340 PF13520 Amino acid permease BED32_03345 PF04960 Glutaminase BED32_03355 PF00872 Transposase, Mutator family BED32_03360 PF00367 phosphotransferase system, EIIB BED32_03360 PF02378 Phosphotransferase system, EIIC BED32_03365 PF13580 SIS domain BED32_03370 PF01418 Helix-turn-helix domain, rpiR family BED32_03370 PF01380 SIS domain BED32_03375 PF01915 Glycosyl hydrolase family 3 C-terminal domain BED32_03375 PF00933 Glycosyl hydrolase family 3 N terminal domain BED32_03385 PF07075 Protein of unknown function (DUF1343) BED32_03395 PF02371 Transposase IS116/IS110/IS902 family BED32_03395 PF01548 Transposase BED32_03400 PF04546 Sigma-70, non-essential region BED32_03400 PF03979 Sigma-70 factor, region 1.1 BED32_03400 PF00140 Sigma-70 factor, region 1.2 BED32_03400 PF04542 Sigma-70 region 2 BED32_03400 PF04539 Sigma-70 region 3 BED32_03400 PF04545 Sigma-70, region 4 BED32_03405 PF08275 DNA primase catalytic core, N-terminal domain BED32_03405 PF01807 CHC2 zinc finger BED32_03405 PF08278 DNA primase DnaG DnaB-binding BED32_03405 PF10410 DnaB-helicase binding domain of primase BED32_03410 PF01165 Ribosomal protein S21 BED32_03415 PF00814 Glycoprotease family BED32_03420 PF02660 Glycerol-3-phosphate acyltransferase BED32_03425 PF02152 Dihydroneopterin aldolase BED32_03430 PF02673 Bacitracin resistance protein BacA BED32_03435 PF12627 Probable RNA and SrmB- binding site of polymerase A BED32_03435 PF01743 Poly A polymerase head domain BED32_03435 PF01966 HD domain BED32_03440 PF08239 Bacterial SH3 domain BED32_03445 PF01928 CYTH domain BED32_03450 PF03710 Glutamate-ammonia ligase adenylyltransferase BED32_03450 PF08335 GlnD PII-uridylyltransferase BED32_03455 PF00294 pfkB family carbohydrate kinase BED32_03455 PF01467 Cytidylyltransferase-like BED32_03460 PF13520 Amino acid permease BED32_03465 PF04380 Membrane fusogenic activity BED32_03470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BED32_03475 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BED32_03480 PF03738 Glutathionylspermidine synthase preATP-grasp BED32_03485 PF06693 Protein of unknown function (DUF1190) BED32_03495 PF02321 Outer membrane efflux protein BED32_03500 PF00293 NUDIX domain BED32_03505 PF06853 Protein of unknown function (DUF1249) BED32_03510 PF00149 Calcineurin-like phosphoesterase BED32_03515 PF05728 Uncharacterised protein family (UPF0227) BED32_03520 PF01751 Toprim domain BED32_03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_03520 PF00986 DNA gyrase B subunit, carboxyl terminus BED32_03520 PF00204 DNA gyrase B BED32_03525 PF03466 LysR substrate binding domain BED32_03525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_03530 PF03992 Antibiotic biosynthesis monooxygenase BED32_03535 PF02525 Flavodoxin-like fold BED32_03540 PF00521 DNA gyrase/topoisomerase IV, subunit A BED32_03540 PF03989 DNA gyrase C-terminal domain, beta-propeller BED32_03545 PF01553 Acyltransferase BED32_03550 PF07731 Multicopper oxidase BED32_03550 PF07732 Multicopper oxidase BED32_03555 PF08497 Radical SAM N-terminal BED32_03555 PF11842 Domain of unknown function (DUF3362) BED32_03555 PF04055 Radical SAM superfamily BED32_03560 PF00248 Aldo/keto reductase family BED32_03565 PF00465 Iron-containing alcohol dehydrogenase BED32_03570 PF06719 AraC-type transcriptional regulator N-terminus BED32_03570 PF12833 Helix-turn-helix domain BED32_03575 PF09335 SNARE associated Golgi protein BED32_03580 PF01053 Cys/Met metabolism PLP-dependent enzyme BED32_03585 PF01618 MotA/TolQ/ExbB proton channel family BED32_03590 PF02472 Biopolymer transport protein ExbD/TolR BED32_03625 PF00437 Type II/IV secretion system protein BED32_03640 PF04972 BON domain BED32_03640 PF13629 Pilus formation protein N terminal region BED32_03640 PF00263 Bacterial type II and III secretion system protein BED32_03665 PF13532 2OG-Fe(II) oxygenase superfamily BED32_03670 PF00873 AcrB/AcrD/AcrF family BED32_03680 PF02586 SOS response associated peptidase (SRAP) BED32_03695 PF12833 Helix-turn-helix domain BED32_03700 PF01527 Transposase BED32_03720 PF12704 MacB-like periplasmic core domain BED32_03720 PF02687 FtsX-like permease family BED32_03720 PF00005 ABC transporter BED32_03725 PF12833 Helix-turn-helix domain BED32_03735 PF13333 Integrase core domain BED32_03735 PF00665 Integrase core domain BED32_03735 PF13276 HTH-like domain BED32_03750 PF00756 Putative esterase BED32_03750 PF11806 Domain of unknown function (DUF3327) BED32_03755 PF00005 ABC transporter BED32_03760 PF01032 FecCD transport family BED32_03765 PF01032 FecCD transport family BED32_03770 PF01497 Periplasmic binding protein BED32_03780 PF01370 NAD dependent epimerase/dehydratase family BED32_03785 PF00672 HAMP domain BED32_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_03785 PF02203 Tar ligand binding domain homologue BED32_03795 PF00771 FHIPEP family BED32_03800 PF01312 FlhB HrpN YscU SpaS Family BED32_03805 PF01311 Bacterial export proteins, family 1 BED32_03810 PF01313 Bacterial export proteins, family 3 BED32_03815 PF00813 FliP family BED32_03820 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED32_03830 PF00072 Response regulator receiver domain BED32_03830 PF02954 Bacterial regulatory protein, Fis family BED32_03830 PF00158 Sigma-54 interaction domain BED32_03835 PF02049 Flagellar hook-basal body complex protein FliE BED32_03855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED32_03855 PF18269 T3SS EscN ATPase C-terminal domain BED32_03880 PF00460 Flagella basal body rod protein BED32_03885 PF00460 Flagella basal body rod protein BED32_03885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED32_03890 PF13861 FlgD Tudor-like domain BED32_03890 PF13860 FlgD Ig-like domain BED32_03890 PF03963 Flagellar hook capping protein - N-terminal region BED32_03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED32_03895 PF07559 Flagellar basal body protein FlaE BED32_03895 PF00460 Flagella basal body rod protein BED32_03900 PF00460 Flagella basal body rod protein BED32_03900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED32_03905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED32_03905 PF00460 Flagella basal body rod protein BED32_03910 PF02107 Flagellar L-ring protein BED32_03915 PF02119 Flagellar P-ring protein BED32_03950 PF00700 Bacterial flagellin C-terminal helical region BED32_03950 PF00669 Bacterial flagellin N-terminal helical region BED32_03960 PF02561 Flagellar protein FliS BED32_03980 PF04545 Sigma-70, region 4 BED32_03980 PF04542 Sigma-70 region 2 BED32_03985 PF01618 MotA/TolQ/ExbB proton channel family BED32_03990 PF00691 OmpA family BED32_03990 PF13677 Membrane MotB of proton-channel complex MotA/MotB BED32_03995 PF05433 Glycine zipper 2TM domain BED32_04000 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED32_04000 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BED32_04005 PF13247 4Fe-4S dicluster domain BED32_04010 PF03916 Polysulphide reductase, NrfD BED32_04015 PF00374 Nickel-dependent hydrogenase BED32_04020 PF01750 Hydrogenase maturation protease BED32_04025 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE BED32_04030 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BED32_04035 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED32_04040 PF01455 HupF/HypC family BED32_04045 PF01924 Hydrogenase formation hypA family BED32_04050 PF00586 AIR synthase related protein, N-terminal domain BED32_04050 PF02769 AIR synthase related protein, C-terminal domain BED32_04055 PF07503 HypF finger BED32_04055 PF17788 HypF Kae1-like domain BED32_04055 PF00708 Acylphosphatase BED32_04055 PF01300 Telomere recombination BED32_04060 PF02661 Fic/DOC family BED32_04060 PF13784 Fic/DOC family N-terminal BED32_04065 PF02110 Hydroxyethylthiazole kinase family BED32_04080 PF08448 PAS fold BED32_04080 PF00563 EAL domain BED32_04080 PF08447 PAS fold BED32_04080 PF00990 Diguanylate cyclase, GGDEF domain BED32_04085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_04100 PF08946 Osmosensory transporter coiled coil BED32_04100 PF00083 Sugar (and other) transporter BED32_04115 PF02690 Na+/Pi-cotransporter BED32_04120 PF01156 Inosine-uridine preferring nucleoside hydrolase BED32_04125 PF00356 Bacterial regulatory proteins, lacI family BED32_04130 PF02371 Transposase IS116/IS110/IS902 family BED32_04130 PF01548 Transposase BED32_04135 PF07690 Major Facilitator Superfamily BED32_04135 PF00083 Sugar (and other) transporter BED32_04145 PF00155 Aminotransferase class I and II BED32_04145 PF00392 Bacterial regulatory proteins, gntR family BED32_04165 PF01497 Periplasmic binding protein BED32_04170 PF01032 FecCD transport family BED32_04175 PF01032 FecCD transport family BED32_04185 PF00557 Metallopeptidase family M24 BED32_04205 PF00529 HlyD membrane-fusion protein of T1SS BED32_04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_04210 PF04632 Fusaric acid resistance protein family BED32_04220 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED32_04220 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED32_04220 PF01276 Orn/Lys/Arg decarboxylase, major domain BED32_04225 PF13520 Amino acid permease BED32_04245 PF03811 InsA N-terminal domain BED32_04245 PF12759 InsA C-terminal domain BED32_04265 PF00589 Phage integrase family BED32_04280 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED32_04280 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED32_04280 PF01276 Orn/Lys/Arg decarboxylase, major domain BED32_04290 PF01464 Transglycosylase SLT domain BED32_04290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BED32_04295 PF04362 Bacterial Fe(2+) trafficking BED32_04300 PF00633 Helix-hairpin-helix motif BED32_04300 PF10576 Iron-sulfur binding domain of endonuclease III BED32_04300 PF14815 NUDIX domain BED32_04300 PF00730 HhH-GPD superfamily base excision DNA repair protein BED32_04305 PF02390 Putative methyltransferase BED32_04310 PF04320 Protein with unknown function (DUF469) BED32_04315 PF04960 Glutaminase BED32_04320 PF11101 Protein of unknown function (DUF2884) BED32_04325 PF04055 Radical SAM superfamily BED32_04325 PF06969 HemN C-terminal domain BED32_04330 PF01725 Ham1 family BED32_04335 PF02594 Uncharacterised ACR, YggU family COG1872 BED32_04340 PF02325 YGGT family BED32_04345 PF03807 NADP oxidoreductase coenzyme F420-dependent BED32_04345 PF14748 Pyrroline-5-carboxylate reductase dimerisation BED32_04350 PF01168 Alanine racemase, N-terminal domain BED32_04355 PF00437 Type II/IV secretion system protein BED32_04360 PF04371 Porphyromonas-type peptidyl-arginine deiminase BED32_04365 PF00795 Carbon-nitrogen hydrolase BED32_04370 PF03652 Holliday junction resolvase BED32_04375 PF02622 Uncharacterized ACR, COG1678 BED32_04380 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BED32_04380 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BED32_04385 PF04452 RNA methyltransferase BED32_04390 PF04231 Endonuclease I BED32_04395 PF17283 SprT-like zinc ribbon domain BED32_04395 PF10263 SprT-like family BED32_04405 PF00872 Transposase, Mutator family BED32_04410 PF04143 Sulphur transport BED32_04420 PF02773 S-adenosylmethionine synthetase, C-terminal domain BED32_04420 PF00438 S-adenosylmethionine synthetase, N-terminal domain BED32_04420 PF02772 S-adenosylmethionine synthetase, central domain BED32_04425 PF17944 Arginine decarboxylase C-terminal helical extension BED32_04425 PF17810 Arginine decarboxylase helical bundle domain BED32_04425 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED32_04430 PF00355 Rieske [2Fe-2S] domain BED32_04435 PF01435 Peptidase family M48 BED32_04440 PF02780 Transketolase, C-terminal domain BED32_04440 PF02779 Transketolase, pyrimidine binding domain BED32_04440 PF00456 Transketolase, thiamine diphosphate binding domain BED32_04445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED32_04445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED32_04450 PF00162 Phosphoglycerate kinase BED32_04455 PF01116 Fructose-bisphosphate aldolase class-II BED32_04460 PF00102 Protein-tyrosine phosphatase BED32_04460 PF09013 YopH, N-terminal BED32_04465 PF05552 Conserved TM helix BED32_04465 PF00924 Mechanosensitive ion channel BED32_04470 PF01548 Transposase BED32_04470 PF02371 Transposase IS116/IS110/IS902 family BED32_04475 PF01810 LysE type translocator BED32_04480 PF04402 Protein of unknown function (DUF541) BED32_04485 PF03466 LysR substrate binding domain BED32_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_04490 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BED32_04495 PF01842 ACT domain BED32_04495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED32_04495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED32_04525 PF00080 Copper/zinc superoxide dismutase (SODC) BED32_04530 PF04055 Radical SAM superfamily BED32_04550 PF01242 6-pyruvoyl tetrahydropterin synthase BED32_04555 PF00175 Oxidoreductase NAD-binding domain BED32_04555 PF00667 FAD binding domain BED32_04555 PF00258 Flavodoxin BED32_04560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED32_04560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED32_04565 PF01507 Phosphoadenosine phosphosulfate reductase family BED32_04580 PF04389 Peptidase family M28 BED32_04585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_04585 PF10414 Sirohaem synthase dimerisation region BED32_04585 PF14824 Sirohaem biosynthesis protein central BED32_04590 PF01507 Phosphoadenosine phosphosulfate reductase family BED32_04595 PF00009 Elongation factor Tu GTP binding domain BED32_04605 PF12084 Protein of unknown function (DUF3561) BED32_04610 PF04977 Septum formation initiator BED32_04615 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BED32_04620 PF02542 YgbB family BED32_04625 PF01142 tRNA pseudouridine synthase D (TruD) BED32_04630 PF01975 Survival protein SurE BED32_04640 PF01551 Peptidase family M23 BED32_04640 PF01476 LysM domain BED32_04645 PF04542 Sigma-70 region 2 BED32_04645 PF04545 Sigma-70, region 4 BED32_04645 PF04539 Sigma-70 region 3 BED32_04645 PF00140 Sigma-70 factor, region 1.2 BED32_04650 PF01624 MutS domain I BED32_04650 PF05188 MutS domain II BED32_04650 PF00488 MutS domain V BED32_04650 PF05192 MutS domain III BED32_04650 PF05190 MutS family domain IV BED32_04665 PF00419 Fimbrial protein BED32_04670 PF00419 Fimbrial protein BED32_04675 PF13953 PapC C-terminal domain BED32_04675 PF13954 PapC N-terminal domain BED32_04675 PF00577 Outer membrane usher protein BED32_04680 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_04680 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_04690 PF00419 Fimbrial protein BED32_04695 PF00419 Fimbrial protein BED32_04720 PF03412 Peptidase C39 family BED32_04720 PF00664 ABC transporter transmembrane region BED32_04720 PF00005 ABC transporter BED32_04725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_04730 PF02687 FtsX-like permease family BED32_04730 PF12704 MacB-like periplasmic core domain BED32_04730 PF00005 ABC transporter BED32_04735 PF02321 Outer membrane efflux protein BED32_04740 PF02801 Beta-ketoacyl synthase, C-terminal domain BED32_04740 PF00109 Beta-ketoacyl synthase, N-terminal domain BED32_04760 PF00155 Aminotransferase class I and II BED32_04765 PF00034 Cytochrome c BED32_04765 PF03150 Di-haem cytochrome c peroxidase BED32_04765 PF14376 Haem-binding domain BED32_04775 PF00679 Elongation factor G C-terminus BED32_04775 PF14492 Elongation Factor G, domain II BED32_04775 PF03764 Elongation factor G, domain IV BED32_04775 PF00009 Elongation factor Tu GTP binding domain BED32_04775 PF03144 Elongation factor Tu domain 2 BED32_04780 PF01022 Bacterial regulatory protein, arsR family BED32_04785 PF08240 Alcohol dehydrogenase GroES-like domain BED32_04785 PF00107 Zinc-binding dehydrogenase BED32_04790 PF03613 PTS system mannose/fructose/sorbose family IID component BED32_04795 PF03609 PTS system sorbose-specific iic component BED32_04805 PF03610 PTS system fructose IIA component BED32_04810 PF13936 Helix-turn-helix domain BED32_04810 PF04198 Putative sugar-binding domain BED32_04815 PF00795 Carbon-nitrogen hydrolase BED32_04835 PF00005 ABC transporter BED32_04840 PF00005 ABC transporter BED32_04845 PF02653 Branched-chain amino acid transport system / permease component BED32_04845 PF11862 Domain of unknown function (DUF3382) BED32_04850 PF02653 Branched-chain amino acid transport system / permease component BED32_04855 PF13458 Periplasmic binding protein BED32_04860 PF05683 Fumarase C-terminus BED32_04860 PF05681 Fumarate hydratase (Fumerase) BED32_04865 PF00384 Molybdopterin oxidoreductase BED32_04865 PF01568 Molydopterin dinucleotide binding domain BED32_04865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED32_04870 PF12800 4Fe-4S binding domain BED32_04870 PF13247 4Fe-4S dicluster domain BED32_04875 PF04976 DMSO reductase anchor subunit (DmsC) BED32_04880 PF02613 Nitrate reductase delta subunit BED32_04885 PF01548 Transposase BED32_04885 PF02371 Transposase IS116/IS110/IS902 family BED32_04890 PF07690 Major Facilitator Superfamily BED32_04895 PF02464 Competence-damaged protein BED32_04900 PF00154 recA bacterial DNA recombination protein BED32_04905 PF02631 RecX family BED32_04910 PF01411 tRNA synthetases class II (A) BED32_04910 PF02272 DHHA1 domain BED32_04910 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED32_04915 PF02599 Global regulator protein family BED32_04935 PF13419 Haloacid dehalogenase-like hydrolase BED32_04945 PF04262 Glutamate-cysteine ligase BED32_04950 PF02664 S-Ribosylhomocysteinase (LuxS) BED32_04955 PF01595 Cyclin M transmembrane N-terminal domain BED32_04955 PF03471 Transporter associated domain BED32_04955 PF00571 CBS domain BED32_04960 PF01548 Transposase BED32_04960 PF02371 Transposase IS116/IS110/IS902 family BED32_04970 PF01578 Cytochrome C assembly protein BED32_04975 PF02881 SRP54-type protein, helical bundle domain BED32_04975 PF00448 SRP54-type protein, GTPase domain BED32_04975 PF02978 Signal peptide binding domain BED32_04980 PF00886 Ribosomal protein S16 BED32_04985 PF05239 PRC-barrel domain BED32_04985 PF01782 RimM N-terminal domain BED32_04990 PF01746 tRNA (Guanine-1)-methyltransferase BED32_04995 PF01245 Ribosomal protein L19 BED32_05005 PF03605 Anaerobic c4-dicarboxylate membrane transporter BED32_05010 PF04397 LytTr DNA-binding domain BED32_05010 PF00072 Response regulator receiver domain BED32_05015 PF00793 DAHP synthetase I family BED32_05020 PF02153 Prephenate dehydrogenase BED32_05020 PF01817 Chorismate mutase type II BED32_05025 PF01817 Chorismate mutase type II BED32_05025 PF00800 Prephenate dehydratase BED32_05030 PF01548 Transposase BED32_05030 PF02371 Transposase IS116/IS110/IS902 family BED32_05035 PF17871 AAA lid domain BED32_05035 PF07724 AAA domain (Cdc48 subfamily) BED32_05035 PF10431 C-terminal, D2-small domain, of ClpB protein BED32_05035 PF02861 Clp amino terminal domain, pathogenicity island component BED32_05035 PF00004 ATPase family associated with various cellular activities (AAA) BED32_05045 PF00849 RNA pseudouridylate synthase BED32_05045 PF01479 S4 domain BED32_05050 PF13525 Outer membrane lipoprotein BED32_05060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED32_05065 PF00872 Transposase, Mutator family BED32_05070 PF01548 Transposase BED32_05070 PF02371 Transposase IS116/IS110/IS902 family BED32_05100 PF10043 Predicted periplasmic lipoprotein (DUF2279) BED32_05105 PF13091 PLD-like domain BED32_05110 PF13380 CoA binding domain BED32_05110 PF00583 Acetyltransferase (GNAT) family BED32_05110 PF13607 Succinyl-CoA ligase like flavodoxin domain BED32_05120 PF00085 Thioredoxin BED32_05125 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED32_05125 PF00588 SpoU rRNA Methylase family BED32_05130 PF07690 Major Facilitator Superfamily BED32_05135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_05135 PF00529 HlyD membrane-fusion protein of T1SS BED32_05140 PF02321 Outer membrane efflux protein BED32_05145 PF01047 MarR family BED32_05150 PF05437 Branched-chain amino acid transport protein (AzlD) BED32_05155 PF03591 AzlC protein BED32_05160 PF07690 Major Facilitator Superfamily BED32_05175 PF01425 Amidase BED32_05190 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_05195 PF00528 Binding-protein-dependent transport system inner membrane component BED32_05200 PF00528 Binding-protein-dependent transport system inner membrane component BED32_05205 PF00005 ABC transporter BED32_05220 PF00795 Carbon-nitrogen hydrolase BED32_05225 PF00155 Aminotransferase class I and II BED32_05230 PF12167 Arm DNA-binding domain BED32_05230 PF00589 Phage integrase family BED32_05240 PF05063 MT-A70 BED32_05285 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED32_05285 PF06630 Enterobacterial exodeoxyribonuclease VIII BED32_05365 PF01695 IstB-like ATP binding protein BED32_05400 PF07102 Protein of unknown function (DUF1364) BED32_05405 PF05866 Endodeoxyribonuclease RusA BED32_05435 PF03245 Bacteriophage Rz lysis protein BED32_05600 PF00596 Class II Aldolase and Adducin N-terminal domain BED32_05610 PF03079 ARD/ARD' family BED32_05615 PF01008 Initiation factor 2 subunit family BED32_05620 PF01636 Phosphotransferase enzyme family BED32_05625 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED32_05625 PF08479 POTRA domain, ShlB-type BED32_05640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED32_05640 PF09317 Domain of unknown function (DUF1974) BED32_05640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BED32_05645 PF13580 SIS domain BED32_05650 PF13230 Glutamine amidotransferases class-II BED32_05655 PF03734 L,D-transpeptidase catalytic domain BED32_05660 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BED32_05660 PF11973 NQRA C-terminal domain BED32_05665 PF03116 NQR2, RnfD, RnfE family BED32_05670 PF04205 FMN-binding domain BED32_05675 PF02508 Rnf-Nqr subunit, membrane protein BED32_05685 PF00970 Oxidoreductase FAD-binding domain BED32_05685 PF00175 Oxidoreductase NAD-binding domain BED32_05685 PF00111 2Fe-2S iron-sulfur cluster binding domain BED32_05690 PF02424 ApbE family BED32_05695 PF04400 (Na+)-NQR maturation NqrM BED32_05700 PF03009 Glycerophosphoryl diester phosphodiesterase family BED32_05705 PF07478 D-ala D-ala ligase C-terminus BED32_05705 PF01820 D-ala D-ala ligase N-terminus BED32_05710 PF13309 HTH domain BED32_05710 PF08348 YheO-like PAS domain BED32_05715 PF00291 Pyridoxal-phosphate dependent enzyme BED32_05725 PF11798 IMS family HHH motif BED32_05725 PF11799 impB/mucB/samB family C-terminal domain BED32_05725 PF00817 impB/mucB/samB family BED32_05730 PF01546 Peptidase family M20/M25/M40 BED32_05730 PF07687 Peptidase dimerisation domain BED32_05735 PF00156 Phosphoribosyl transferase domain BED32_05740 PF02371 Transposase IS116/IS110/IS902 family BED32_05740 PF01548 Transposase BED32_05750 PF07417 Sigma factor-binding transcriptional regulator Crl BED32_05755 PF01472 PUA domain BED32_05755 PF00696 Amino acid kinase family BED32_05760 PF00171 Aldehyde dehydrogenase family BED32_05765 PF00392 Bacterial regulatory proteins, gntR family BED32_05765 PF07702 UTRA domain BED32_05770 PF00367 phosphotransferase system, EIIB BED32_05770 PF02378 Phosphotransferase system, EIIC BED32_05775 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED32_05775 PF02056 Family 4 glycosyl hydrolase BED32_05780 PF07317 Flagellar regulator YcgR BED32_05780 PF07238 PilZ domain BED32_05785 PF10091 Putative glucoamylase BED32_05785 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BED32_05785 PF06165 Glycosyltransferase family 36 BED32_05800 PF08241 Methyltransferase domain BED32_05820 PF00593 TonB dependent receptor BED32_05820 PF07715 TonB-dependent Receptor Plug Domain BED32_05825 PF01202 Shikimate kinase BED32_05830 PF06865 Pyrimidine/purine nucleoside phosphorylase BED32_05835 PF04381 Putative exonuclease, RdgC BED32_05840 PF00480 ROK family BED32_05845 PF13476 AAA domain BED32_05850 PF00149 Calcineurin-like phosphoesterase BED32_05850 PF12320 Type 5 capsule protein repressor C-terminal domain BED32_05855 PF00072 Response regulator receiver domain BED32_05855 PF00486 Transcriptional regulatory protein, C terminal BED32_05860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_05860 PF00512 His Kinase A (phospho-acceptor) domain BED32_05860 PF00989 PAS fold BED32_05860 PF11808 Phosphate regulon sensor protein PhoR BED32_05865 PF12849 PBP superfamily domain BED32_05870 PF05525 Branched-chain amino acid transport protein BED32_05875 PF00324 Amino acid permease BED32_05880 PF00128 Alpha amylase, catalytic domain BED32_05880 PF02903 Alpha amylase, N-terminal ig-like domain BED32_05895 PF01848 Hok/gef family BED32_05900 PF10417 C-terminal domain of 1-Cys peroxiredoxin BED32_05900 PF00578 AhpC/TSA family BED32_05905 PF04336 Acyl carrier protein phosphodiesterase BED32_05910 PF02547 Queuosine biosynthesis protein BED32_05920 PF01702 Queuine tRNA-ribosyltransferase BED32_05925 PF02699 Preprotein translocase subunit BED32_05930 PF02355 Protein export membrane protein BED32_05930 PF13721 SecD export protein N-terminal TM region BED32_05930 PF07549 SecD/SecF GG Motif BED32_05935 PF02355 Protein export membrane protein BED32_05935 PF07549 SecD/SecF GG Motif BED32_05950 PF03477 ATP cone domain BED32_05955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED32_05955 PF01872 RibD C-terminal domain BED32_05960 PF00885 6,7-dimethyl-8-ribityllumazine synthase BED32_05965 PF01029 NusB family BED32_05970 PF00586 AIR synthase related protein, N-terminal domain BED32_05970 PF02769 AIR synthase related protein, C-terminal domain BED32_05975 PF04608 Phosphatidylglycerophosphatase A BED32_05980 PF01548 Transposase BED32_05980 PF02371 Transposase IS116/IS110/IS902 family BED32_05985 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BED32_05985 PF02779 Transketolase, pyrimidine binding domain BED32_05985 PF02780 Transketolase, C-terminal domain BED32_05990 PF00348 Polyprenyl synthetase BED32_05995 PF02609 Exonuclease VII small subunit BED32_06000 PF02568 Thiamine biosynthesis protein (ThiI) BED32_06000 PF02926 THUMP domain BED32_06005 PF01965 DJ-1/PfpI family BED32_06010 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED32_06010 PF02558 Ketopantoate reductase PanE/ApbA BED32_06015 PF04461 Protein of unknown function (DUF520) BED32_06020 PF07690 Major Facilitator Superfamily BED32_06025 PF01040 UbiA prenyltransferase family BED32_06030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BED32_06035 PF00510 Cytochrome c oxidase subunit III BED32_06040 PF00115 Cytochrome C and Quinol oxidase polypeptide I BED32_06045 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BED32_06045 PF06481 COX Aromatic Rich Motif BED32_06050 PF03502 Nucleoside-specific channel-forming protein, Tsx BED32_06055 PF07690 Major Facilitator Superfamily BED32_06060 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED32_06060 PF03923 Uncharacterized lipoprotein BED32_06065 PF01722 BolA-like protein BED32_06075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED32_06075 PF05698 Bacterial trigger factor protein (TF) C-terminus BED32_06075 PF05697 Bacterial trigger factor protein (TF) BED32_06080 PF00574 Clp protease BED32_06085 PF10431 C-terminal, D2-small domain, of ClpB protein BED32_06085 PF07724 AAA domain (Cdc48 subfamily) BED32_06085 PF06689 ClpX C4-type zinc finger BED32_06090 PF05362 Lon protease (S16) C-terminal proteolytic domain BED32_06090 PF00004 ATPase family associated with various cellular activities (AAA) BED32_06090 PF02190 ATP-dependent protease La (LON) substrate-binding domain BED32_06095 PF00216 Bacterial DNA-binding protein BED32_06100 PF13145 PPIC-type PPIASE domain BED32_06115 PF06508 Queuosine biosynthesis protein QueC BED32_06120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_06120 PF12793 Sugar transport-related sRNA regulator N-term BED32_06135 PF01037 Lrp/AsnC ligand binding domain BED32_06135 PF13404 AsnC-type helix-turn-helix domain BED32_06140 PF00664 ABC transporter transmembrane region BED32_06140 PF00005 ABC transporter BED32_06145 PF00664 ABC transporter transmembrane region BED32_06145 PF00005 ABC transporter BED32_06150 PF00543 Nitrogen regulatory protein P-II BED32_06155 PF00909 Ammonium Transporter Family BED32_06165 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED32_06170 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED32_06180 PF05321 Haemolysin expression modulating protein BED32_06185 PF10757 Biofilm formation regulator YbaJ BED32_06195 PF00005 ABC transporter BED32_06200 PF00950 ABC 3 transport family BED32_06205 PF01297 Zinc-uptake complex component A periplasmic BED32_06210 PF00444 Ribosomal protein L36 BED32_06215 PF01197 Ribosomal protein L31 BED32_06220 PF10797 Protein of unknown function BED32_06225 PF10941 Protein of unknown function DUF2620 BED32_06230 PF01676 Metalloenzyme superfamily BED32_06235 PF01168 Alanine racemase, N-terminal domain BED32_06245 PF00873 AcrB/AcrD/AcrF family BED32_06250 PF00529 HlyD membrane-fusion protein of T1SS BED32_06250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_06255 PF08361 MAATS-type transcriptional repressor, C-terminal region BED32_06255 PF00440 Bacterial regulatory proteins, tetR family BED32_06260 PF02635 DsrE/DsrF-like family BED32_06270 PF10689 Protein of unknown function (DUF2496) BED32_06280 PF04304 Protein of unknown function (DUF454) BED32_06285 PF00156 Phosphoribosyl transferase domain BED32_06290 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BED32_06290 PF12169 DNA polymerase III subunits gamma and tau domain III BED32_06290 PF12170 DNA polymerase III tau subunit V interacting with alpha BED32_06295 PF02575 YbaB/EbfC DNA-binding family BED32_06300 PF02132 RecR protein BED32_06300 PF13662 Toprim domain BED32_06305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_06305 PF00183 Hsp90 protein BED32_06310 PF05191 Adenylate kinase, active site lid BED32_06315 PF00762 Ferrochelatase BED32_06325 PF01501 Glycosyl transferase family 8 BED32_06325 PF00535 Glycosyl transferase family 2 BED32_06330 PF00535 Glycosyl transferase family 2 BED32_06335 PF00534 Glycosyl transferases group 1 BED32_06335 PF13439 Glycosyltransferase Family 4 BED32_06340 PF00534 Glycosyl transferases group 1 BED32_06340 PF13439 Glycosyltransferase Family 4 BED32_06345 PF00953 Glycosyl transferase family 4 BED32_06350 PF02719 Polysaccharide biosynthesis protein BED32_06355 PF13439 Glycosyltransferase Family 4 BED32_06355 PF00534 Glycosyl transferases group 1 BED32_06360 PF16363 GDP-mannose 4,6 dehydratase BED32_06365 PF00294 pfkB family carbohydrate kinase BED32_06370 PF02254 TrkA-N domain BED32_06370 PF00999 Sodium/hydrogen exchanger family BED32_06375 PF07690 Major Facilitator Superfamily BED32_06390 PF04073 Aminoacyl-tRNA editing domain BED32_06395 PF01963 TraB family BED32_06400 PF00403 Heavy-metal-associated domain BED32_06405 PF13411 MerR HTH family regulatory protein BED32_06410 PF01957 NfeD-like C-terminal, partner-binding BED32_06415 PF01145 SPFH domain / Band 7 family BED32_06415 PF16200 C-terminal region of band_7 BED32_06420 PF00085 Thioredoxin BED32_06425 PF00106 short chain dehydrogenase BED32_06430 PF13472 GDSL-like Lipase/Acylhydrolase family BED32_06435 PF00005 ABC transporter BED32_06445 PF02222 ATP-grasp domain BED32_06445 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BED32_06450 PF00731 AIR carboxylase BED32_06455 PF00149 Calcineurin-like phosphoesterase BED32_06460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED32_06465 PF09190 DALR domain BED32_06465 PF01406 tRNA synthetases class I (C) catalytic domain BED32_06475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BED32_06475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BED32_06485 PF00589 Phage integrase family BED32_06490 PF05063 MT-A70 BED32_06535 PF06630 Enterobacterial exodeoxyribonuclease VIII BED32_06535 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED32_06600 PF01695 IstB-like ATP binding protein BED32_06635 PF07102 Protein of unknown function (DUF1364) BED32_06640 PF05866 Endodeoxyribonuclease RusA BED32_06685 PF06440 DNA polymerase III, theta subunit BED32_06760 PF04984 Phage tail sheath protein subtilisin-like domain BED32_06760 PF17482 Phage tail sheath C-terminal domain BED32_06820 PF01757 Acyltransferase family BED32_06825 PF00589 Phage integrase family BED32_06830 PF05063 MT-A70 BED32_06925 PF00717 Peptidase S24-like BED32_06925 PF01381 Helix-turn-helix BED32_06950 PF00772 DnaB-like helicase N terminal domain BED32_06950 PF03796 DnaB-like helicase C terminal domain BED32_07000 PF00149 Calcineurin-like phosphoesterase BED32_07040 PF00959 Phage lysozyme BED32_07045 PF03245 Bacteriophage Rz lysis protein BED32_07205 PF00589 Phage integrase family BED32_07205 PF14659 Phage integrase, N-terminal SAM-like domain BED32_07205 PF13356 Arm DNA-binding domain BED32_07210 PF14659 Phage integrase, N-terminal SAM-like domain BED32_07210 PF00589 Phage integrase family BED32_07210 PF13356 Arm DNA-binding domain BED32_07215 PF14659 Phage integrase, N-terminal SAM-like domain BED32_07215 PF00589 Phage integrase family BED32_07215 PF13356 Arm DNA-binding domain BED32_07230 PF13784 Fic/DOC family N-terminal BED32_07230 PF02661 Fic/DOC family BED32_07285 PF00717 Peptidase S24-like BED32_07295 PF00072 Response regulator receiver domain BED32_07295 PF00486 Transcriptional regulatory protein, C terminal BED32_07305 PF02371 Transposase IS116/IS110/IS902 family BED32_07305 PF01548 Transposase BED32_07315 PF08007 Cupin superfamily protein BED32_07325 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED32_07330 PF00664 ABC transporter transmembrane region BED32_07330 PF00005 ABC transporter BED32_07345 PF00149 Calcineurin-like phosphoesterase BED32_07360 PF00313 'Cold-shock' DNA-binding domain BED32_07365 PF00313 'Cold-shock' DNA-binding domain BED32_07370 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED32_07375 PF05230 MASE2 domain BED32_07375 PF00990 Diguanylate cyclase, GGDEF domain BED32_07380 PF02416 mttA/Hcf106 family BED32_07385 PF04055 Radical SAM superfamily BED32_07385 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BED32_07390 PF03099 Biotin/lipoate A/B protein ligase family BED32_07395 PF04359 Protein of unknown function (DUF493) BED32_07400 PF07943 Penicillin-binding protein 5, C-terminal domain BED32_07400 PF00768 D-alanyl-D-alanine carboxypeptidase BED32_07405 PF03330 Lytic transglycolase BED32_07405 PF05036 Sporulation related domain BED32_07410 PF01098 Cell cycle protein BED32_07415 PF00905 Penicillin binding protein transpeptidase domain BED32_07415 PF03717 Penicillin-binding Protein dimerisation domain BED32_07420 PF02590 Predicted SPOUT methyltransferase BED32_07430 PF01467 Cytidylyltransferase-like BED32_07435 PF06144 DNA polymerase III, delta subunit BED32_07435 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BED32_07440 PF04390 Lipopolysaccharide-assembly BED32_07445 PF00133 tRNA synthetases class I (I, L, M and V) BED32_07445 PF13603 Leucyl-tRNA synthetase, Domain 2 BED32_07445 PF08264 Anticodon-binding domain of tRNA BED32_07450 PF07295 Zinc-ribbon containing domain BED32_07455 PF00005 ABC transporter BED32_07460 PF00528 Binding-protein-dependent transport system inner membrane component BED32_07465 PF00528 Binding-protein-dependent transport system inner membrane component BED32_07470 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_07480 PF00795 Carbon-nitrogen hydrolase BED32_07485 PF03471 Transporter associated domain BED32_07485 PF00571 CBS domain BED32_07495 PF02562 PhoH-like protein BED32_07500 PF00919 Uncharacterized protein family UPF0004 BED32_07500 PF01938 TRAM domain BED32_07500 PF04055 Radical SAM superfamily BED32_07505 PF01494 FAD binding domain BED32_07540 PF00733 Asparagine synthase BED32_07540 PF13537 Glutamine amidotransferase domain BED32_07545 PF13344 Haloacid dehalogenase-like hydrolase BED32_07550 PF00480 ROK family BED32_07550 PF01047 MarR family BED32_07555 PF01979 Amidohydrolase family BED32_07560 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BED32_07565 PF00367 phosphotransferase system, EIIB BED32_07565 PF02378 Phosphotransferase system, EIIC BED32_07565 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED32_07570 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED32_07570 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BED32_07575 PF03573 outer membrane porin, OprD family BED32_07580 PF13982 YbfN-like lipoprotein BED32_07585 PF03173 Putative carbohydrate binding domain BED32_07585 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BED32_07585 PF00728 Glycosyl hydrolase family 20, catalytic domain BED32_07585 PF02838 Glycosyl hydrolase family 20, domain 2 BED32_07590 PF01475 Ferric uptake regulator family BED32_07595 PF00258 Flavodoxin BED32_07600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_07600 PF00672 HAMP domain BED32_07600 PF02203 Tar ligand binding domain homologue BED32_07605 PF01402 Ribbon-helix-helix protein, copG family BED32_07610 PF12697 Alpha/beta hydrolase family BED32_07615 PF17206 SeqA protein N-terminal domain BED32_07615 PF03925 SeqA protein C-terminal domain BED32_07620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED32_07620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED32_07620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED32_07620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED32_07630 PF00892 EamA-like transporter family BED32_07635 PF00486 Transcriptional regulatory protein, C terminal BED32_07635 PF00072 Response regulator receiver domain BED32_07640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_07640 PF13492 GAF domain BED32_07640 PF13493 Domain of unknown function (DUF4118) BED32_07640 PF00512 His Kinase A (phospho-acceptor) domain BED32_07640 PF02702 Osmosensitive K+ channel His kinase sensor domain BED32_07645 PF02669 K+-transporting ATPase, c chain BED32_07655 PF03814 Potassium-transporting ATPase A subunit BED32_07660 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) BED32_07665 PF10725 Protein of unknown function (DUF2517) BED32_07675 PF02794 RTX toxin acyltransferase family BED32_07685 PF08349 Protein of unknown function (DUF1722) BED32_07690 PF00875 DNA photolyase BED32_07690 PF03441 FAD binding domain of DNA photolyase BED32_07695 PF02112 cAMP phosphodiesterases class-II BED32_07700 PF01784 NIF3 (NGG1p interacting factor 3) BED32_07705 PF02682 Carboxyltransferase domain, subdomain C and D BED32_07710 PF02626 Carboxyltransferase domain, subdomain A and B BED32_07715 PF03746 LamB/YcsF family BED32_07730 PF01470 Pyroglutamyl peptidase BED32_07735 PF00285 Citrate synthase, C-terminal domain BED32_07740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED32_07745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED32_07750 PF00890 FAD binding domain BED32_07750 PF02910 Fumarate reductase flavoprotein C-term BED32_07755 PF13085 2Fe-2S iron-sulfur cluster binding domain BED32_07760 PF16870 2-oxoglutarate dehydrogenase C-terminal BED32_07760 PF16078 2-oxoglutarate dehydrogenase N-terminus BED32_07760 PF00676 Dehydrogenase E1 component BED32_07760 PF02779 Transketolase, pyrimidine binding domain BED32_07765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED32_07765 PF00364 Biotin-requiring enzyme BED32_07765 PF02817 e3 binding domain BED32_07770 PF08442 ATP-grasp domain BED32_07770 PF00549 CoA-ligase BED32_07775 PF00549 CoA-ligase BED32_07775 PF02629 CoA binding domain BED32_07780 PF00149 Calcineurin-like phosphoesterase BED32_07780 PF02872 5'-nucleotidase, C-terminal domain BED32_07785 PF01654 Cytochrome bd terminal oxidase subunit I BED32_07790 PF02322 Cytochrome bd terminal oxidase subunit II BED32_07795 PF08173 Membrane bound YbgT-like protein BED32_07800 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BED32_07805 PF03061 Thioesterase superfamily BED32_07810 PF01618 MotA/TolQ/ExbB proton channel family BED32_07815 PF02472 Biopolymer transport protein ExbD/TolR BED32_07820 PF06519 TolA C-terminal BED32_07820 PF06519 TolA C-terminal BED32_07825 PF04052 TolB amino-terminal domain BED32_07825 PF07676 WD40-like Beta Propeller Repeat BED32_07830 PF00691 OmpA family BED32_07835 PF16331 TolA binding protein trimerisation BED32_07835 PF13174 Tetratricopeptide repeat BED32_07860 PF02445 Quinolinate synthetase A protein BED32_07865 PF04973 Nicotinamide mononucleotide transporter BED32_07870 PF01545 Cation efflux family BED32_07875 PF00793 DAHP synthetase I family BED32_07880 PF00300 Histidine phosphatase superfamily (branch 1) BED32_07885 PF01223 DNA/RNA non-specific endonuclease BED32_07905 PF01263 Aldose 1-epimerase BED32_07910 PF00288 GHMP kinases N terminal domain BED32_07910 PF10509 Galactokinase galactose-binding signature BED32_07910 PF08544 GHMP kinases C terminal BED32_07915 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BED32_07915 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BED32_07920 PF16363 GDP-mannose 4,6 dehydratase BED32_07930 PF00005 ABC transporter BED32_07935 PF03459 TOBE domain BED32_07935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_07940 PF10766 Multidrug efflux pump-associated protein AcrZ BED32_07950 PF00528 Binding-protein-dependent transport system inner membrane component BED32_07955 PF00005 ABC transporter BED32_07955 PF03459 TOBE domain BED32_07965 PF10282 Lactonase, 7-bladed beta-propeller BED32_07970 PF00202 Aminotransferase class-III BED32_07975 PF06968 Biotin and Thiamin Synthesis associated domain BED32_07975 PF04055 Radical SAM superfamily BED32_07980 PF00155 Aminotransferase class I and II BED32_07985 PF08241 Methyltransferase domain BED32_07995 PF00005 ABC transporter BED32_08000 PF12344 Ultra-violet resistance protein B BED32_08000 PF02151 UvrB/uvrC motif BED32_08000 PF17757 UvrB interaction domain BED32_08000 PF00271 Helicase conserved C-terminal domain BED32_08000 PF04851 Type III restriction enzyme, res subunit BED32_08005 PF09905 DNA-binding protein VF530 BED32_08010 PF01933 Uncharacterised protein family UPF0052 BED32_08015 PF06463 Molybdenum Cofactor Synthesis C BED32_08015 PF04055 Radical SAM superfamily BED32_08020 PF01967 MoaC family BED32_08025 PF02597 ThiS family BED32_08030 PF02391 MoaE protein BED32_08035 PF01027 Inhibitor of apoptosis-promoting Bax1 BED32_08050 PF00005 ABC transporter BED32_08055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_08060 PF00440 Bacterial regulatory proteins, tetR family BED32_08060 PF09209 Tetracyclin repressor-like, C-terminal domain BED32_08065 PF00270 DEAD/DEAH box helicase BED32_08065 PF00271 Helicase conserved C-terminal domain BED32_08070 PF01207 Dihydrouridine synthase (Dus) BED32_08080 PF01769 Divalent cation transporter BED32_08080 PF03448 MgtE intracellular N domain BED32_08080 PF00571 CBS domain BED32_08085 PF00768 D-alanyl-D-alanine carboxypeptidase BED32_08090 PF01565 FAD binding domain BED32_08090 PF09330 D-lactate dehydrogenase, membrane binding BED32_08095 PF01928 CYTH domain BED32_08100 PF01844 HNH endonuclease BED32_08110 PF04226 Transglycosylase associated protein BED32_08115 PF00005 ABC transporter BED32_08125 PF00528 Binding-protein-dependent transport system inner membrane component BED32_08130 PF00528 Binding-protein-dependent transport system inner membrane component BED32_08135 PF07308 Protein of unknown function (DUF1456) BED32_08145 PF02653 Branched-chain amino acid transport system / permease component BED32_08150 PF02653 Branched-chain amino acid transport system / permease component BED32_08155 PF00005 ABC transporter BED32_08160 PF00005 ABC transporter BED32_08165 PF00581 Rhodanese-like domain BED32_08180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED32_08190 PF00005 ABC transporter BED32_08195 PF00528 Binding-protein-dependent transport system inner membrane component BED32_08210 PF03466 LysR substrate binding domain BED32_08210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_08220 PF00892 EamA-like transporter family BED32_08230 PF00267 Gram-negative porin BED32_08235 PF06733 DEAD_2 BED32_08235 PF13307 Helicase C-terminal domain BED32_08240 PF00230 Major intrinsic protein BED32_08245 PF02885 Glycosyl transferase family, helical bundle domain BED32_08265 PF05971 RNA methyltransferase BED32_08270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_08270 PF08447 PAS fold BED32_08270 PF13426 PAS domain BED32_08275 PF00005 ABC transporter BED32_08280 PF00528 Binding-protein-dependent transport system inner membrane component BED32_08285 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_08290 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED32_08295 PF00210 Ferritin-like domain BED32_08300 PF13847 Methyltransferase domain BED32_08315 PF02469 Fasciclin domain BED32_08325 PF00892 EamA-like transporter family BED32_08335 PF13505 Outer membrane protein beta-barrel domain BED32_08355 PF00005 ABC transporter BED32_08355 PF12848 ABC transporter BED32_08360 PF01548 Transposase BED32_08360 PF02371 Transposase IS116/IS110/IS902 family BED32_08365 PF00899 ThiF family BED32_08370 PF03453 MoeA N-terminal region (domain I and II) BED32_08370 PF03454 MoeA C-terminal region (domain IV) BED32_08370 PF00994 Probable molybdopterin binding domain BED32_08385 PF00005 ABC transporter BED32_08385 PF02687 FtsX-like permease family BED32_08385 PF12704 MacB-like periplasmic core domain BED32_08405 PF00756 Putative esterase BED32_08410 PF00107 Zinc-binding dehydrogenase BED32_08410 PF08240 Alcohol dehydrogenase GroES-like domain BED32_08415 PF03466 LysR substrate binding domain BED32_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_08420 PF06779 Uncharacterised MFS-type transporter YbfB BED32_08425 PF01227 GTP cyclohydrolase I BED32_08430 PF04235 Protein of unknown function (DUF418) BED32_08435 PF00356 Bacterial regulatory proteins, lacI family BED32_08440 PF13407 Periplasmic binding protein domain BED32_08445 PF00005 ABC transporter BED32_08450 PF02653 Branched-chain amino acid transport system / permease component BED32_08455 PF00158 Sigma-54 interaction domain BED32_08455 PF01590 GAF domain BED32_08465 PF13247 4Fe-4S dicluster domain BED32_08465 PF12800 4Fe-4S binding domain BED32_08470 PF01750 Hydrogenase maturation protease BED32_08475 PF07450 Formate hydrogenlyase maturation protein HycH BED32_08480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED32_08485 PF12838 4Fe-4S dicluster domain BED32_08490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED32_08490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED32_08490 PF00374 Nickel-dependent hydrogenase BED32_08495 PF00361 Proton-conducting membrane transporter BED32_08495 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED32_08500 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED32_08505 PF00361 Proton-conducting membrane transporter BED32_08505 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED32_08510 PF00146 NADH dehydrogenase BED32_08515 PF00361 Proton-conducting membrane transporter BED32_08520 PF00037 4Fe-4S binding domain BED32_08520 PF12798 4Fe-4S binding domain BED32_08525 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BED32_08530 PF01455 HupF/HypC family BED32_08535 PF02698 DUF218 domain BED32_08540 PF00390 Malic enzyme, N-terminal domain BED32_08540 PF03949 Malic enzyme, NAD binding domain BED32_08550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED32_08550 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BED32_08555 PF04172 LrgB-like family BED32_08560 PF03788 LrgA family BED32_08565 PF07690 Major Facilitator Superfamily BED32_08585 PF09334 tRNA synthetases class I (M) BED32_08585 PF01588 Putative tRNA binding domain BED32_08590 PF10609 NUBPL iron-transfer P-loop NTPase BED32_08595 PF00485 Phosphoribulokinase / Uridine kinase family BED32_08600 PF00692 dUTPase BED32_08605 PF05170 AsmA family BED32_08610 PF03606 C4-dicarboxylate anaerobic carrier BED32_08615 PF03471 Transporter associated domain BED32_08615 PF03741 Integral membrane protein TerC family BED32_08615 PF00571 CBS domain BED32_08625 PF00483 Nucleotidyl transferase BED32_08630 PF00535 Glycosyl transferase family 2 BED32_08640 PF01061 ABC-2 type transporter BED32_08645 PF00005 ABC transporter BED32_08650 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BED32_08655 PF01370 NAD dependent epimerase/dehydratase family BED32_08660 PF00535 Glycosyl transferase family 2 BED32_08660 PF00534 Glycosyl transferases group 1 BED32_08675 PF00872 Transposase, Mutator family BED32_08700 PF00483 Nucleotidyl transferase BED32_08705 PF00483 Nucleotidyl transferase BED32_08710 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BED32_08710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BED32_08715 PF01502 Phosphoribosyl-AMP cyclohydrolase BED32_08715 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BED32_08720 PF00977 Histidine biosynthesis protein BED32_08725 PF00977 Histidine biosynthesis protein BED32_08730 PF00117 Glutamine amidotransferase class-I BED32_08735 PF00475 Imidazoleglycerol-phosphate dehydratase BED32_08740 PF00155 Aminotransferase class I and II BED32_08745 PF00815 Histidinol dehydrogenase BED32_08750 PF01634 ATP phosphoribosyltransferase BED32_08750 PF08029 HisG, C-terminal domain BED32_08755 PF01370 NAD dependent epimerase/dehydratase family BED32_08760 PF02653 Branched-chain amino acid transport system / permease component BED32_08765 PF00005 ABC transporter BED32_08770 PF00465 Iron-containing alcohol dehydrogenase BED32_08780 PF13520 Amino acid permease BED32_08785 PF08411 Exonuclease C-terminal BED32_08785 PF00929 Exonuclease BED32_08790 PF00550 Phosphopantetheine attachment site BED32_08790 PF07993 Male sterility protein BED32_08790 PF00501 AMP-binding enzyme BED32_08795 PF04632 Fusaric acid resistance protein family BED32_08800 PF04363 Protein of unknown function (DUF496) BED32_08805 PF02653 Branched-chain amino acid transport system / permease component BED32_08810 PF02653 Branched-chain amino acid transport system / permease component BED32_08820 PF13407 Periplasmic binding protein domain BED32_08825 PF00288 GHMP kinases N terminal domain BED32_08830 PF00155 Aminotransferase class I and II BED32_08835 PF10414 Sirohaem synthase dimerisation region BED32_08835 PF14824 Sirohaem biosynthesis protein central BED32_08835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_08840 PF00871 Acetokinase family BED32_08845 PF10662 Ethanolamine utilisation - propanediol utilisation BED32_08850 PF00936 BMC domain BED32_08860 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED32_08860 PF13237 4Fe-4S dicluster domain BED32_08860 PF10531 SLBB domain BED32_08860 PF13375 RnfC Barrel sandwich hybrid domain BED32_08865 PF00465 Iron-containing alcohol dehydrogenase BED32_08870 PF00171 Aldehyde dehydrogenase family BED32_08875 PF01923 Cobalamin adenosyltransferase BED32_08880 PF03319 Ethanolamine utilisation protein EutN/carboxysome BED32_08890 PF06130 Phosphate propanoyltransferase BED32_08900 PF00936 BMC domain BED32_08910 PF18427 DD-reactivating factor swiveling domain BED32_08910 PF08841 Diol dehydratase reactivase ATPase-like domain BED32_08915 PF02287 Dehydratase small subunit BED32_08920 PF02288 Dehydratase medium subunit BED32_08925 PF02286 Dehydratase large subunit BED32_08930 PF00936 BMC domain BED32_08935 PF00936 BMC domain BED32_08940 PF00230 Major intrinsic protein BED32_08945 PF12833 Helix-turn-helix domain BED32_08945 PF10114 Sensory domain found in PocR BED32_08950 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED32_08950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED32_08960 PF02570 Precorrin-8X methylmutase BED32_08965 PF01888 CbiD BED32_08970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_08975 PF05175 Methyltransferase small domain BED32_08980 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_08985 PF11761 Cobalamin biosynthesis central region BED32_08985 PF11760 Cobalamin synthesis G N-terminal BED32_08985 PF01890 Cobalamin synthesis G C-terminus BED32_08990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_08995 PF02571 Precorrin-6x reductase CbiJ/CobK BED32_09000 PF06180 Cobalt chelatase (CbiK) BED32_09005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED32_09010 PF01891 Cobalt uptake substrate-specific transmembrane region BED32_09015 PF02553 Cobalt transport protein component CbiN BED32_09020 PF02361 Cobalt transport protein BED32_09025 PF00005 ABC transporter BED32_09030 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED32_09040 PF02654 Cobalamin-5-phosphate synthase BED32_09045 PF00300 Histidine phosphatase superfamily (branch 1) BED32_09050 PF02277 Phosphoribosyltransferase BED32_09095 PF04717 Type VI secretion system, phage-baseplate injector BED32_09120 PF00764 Arginosuccinate synthase BED32_09125 PF01554 MatE BED32_09135 PF02581 Thiamine monophosphate synthase BED32_09145 PF00455 DeoR C terminal sensor domain BED32_09145 PF08220 DeoR-like helix-turn-helix domain BED32_09150 PF00144 Beta-lactamase BED32_09155 PF01584 CheW-like domain BED32_09155 PF00072 Response regulator receiver domain BED32_09165 PF00392 Bacterial regulatory proteins, gntR family BED32_09165 PF00155 Aminotransferase class I and II BED32_09175 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED32_09175 PF02558 Ketopantoate reductase PanE/ApbA BED32_09185 PF00005 ABC transporter BED32_09185 PF08402 TOBE domain BED32_09190 PF00528 Binding-protein-dependent transport system inner membrane component BED32_09200 PF07690 Major Facilitator Superfamily BED32_09205 PF05231 MASE1 BED32_09205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_09205 PF07730 Histidine kinase BED32_09210 PF00196 Bacterial regulatory proteins, luxR family BED32_09210 PF00072 Response regulator receiver domain BED32_09215 PF12431 Transcriptional regulator BED32_09215 PF00072 Response regulator receiver domain BED32_09220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_09220 PF17203 Single cache domain 3 BED32_09220 PF00989 PAS fold BED32_09220 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED32_09235 PF08218 Citrate lyase ligase C-terminal domain BED32_09240 PF06857 Malonate decarboxylase delta subunit (MdcD) BED32_09245 PF03328 HpcH/HpaI aldolase/citrate lyase family BED32_09250 PF04223 Citrate lyase, alpha subunit (CitF) BED32_09255 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase BED32_09255 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED32_09260 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED32_09265 PF00939 Sodium:sulfate symporter transmembrane region BED32_09280 PF03480 Bacterial extracellular solute-binding protein, family 7 BED32_09290 PF01648 4'-phosphopantetheinyl transferase superfamily BED32_09290 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BED32_09300 PF00083 Sugar (and other) transporter BED32_09305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_09305 PF00381 PTS HPr component phosphorylation site BED32_09310 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BED32_09315 PF00849 RNA pseudouridylate synthase BED32_09330 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_09330 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_09340 PF13953 PapC C-terminal domain BED32_09340 PF13954 PapC N-terminal domain BED32_09340 PF00577 Outer membrane usher protein BED32_09345 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_09345 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_09360 PF00196 Bacterial regulatory proteins, luxR family BED32_09360 PF00072 Response regulator receiver domain BED32_09370 PF06167 Glucose-regulated metallo-peptidase M90 BED32_09380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED32_09380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED32_09405 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_09410 PF01548 Transposase BED32_09410 PF02371 Transposase IS116/IS110/IS902 family BED32_09415 PF00483 Nucleotidyl transferase BED32_09425 PF14001 YdfZ protein BED32_09440 PF10777 Inner membrane protein YlaC BED32_09445 PF00698 Acyl transferase domain BED32_09445 PF16197 Ketoacyl-synthetase C-terminal extension BED32_09445 PF00109 Beta-ketoacyl synthase, N-terminal domain BED32_09445 PF02801 Beta-ketoacyl synthase, C-terminal domain BED32_09445 PF00107 Zinc-binding dehydrogenase BED32_09445 PF00550 Phosphopantetheine attachment site BED32_09445 PF14765 Polyketide synthase dehydratase BED32_09445 PF08240 Alcohol dehydrogenase GroES-like domain BED32_09445 PF08659 KR domain BED32_09450 PF00872 Transposase, Mutator family BED32_09455 PF00703 Glycosyl hydrolases family 2 BED32_09455 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BED32_09455 PF16353 Domain of unknown function(DUF4981) BED32_09455 PF02929 Beta galactosidase small chain BED32_09455 PF02837 Glycosyl hydrolases family 2, sugar binding domain BED32_09460 PF00356 Bacterial regulatory proteins, lacI family BED32_09465 PF00313 'Cold-shock' DNA-binding domain BED32_09470 PF10781 Dextransucrase DSRB BED32_09475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_09475 PF00672 HAMP domain BED32_09475 PF02203 Tar ligand binding domain homologue BED32_09490 PF02308 MgtC family BED32_09495 PF00690 Cation transporter/ATPase, N-terminus BED32_09495 PF00689 Cation transporting ATPase, C-terminus BED32_09500 PF00107 Zinc-binding dehydrogenase BED32_09500 PF16884 N-terminal domain of oxidoreductase BED32_09505 PF00582 Universal stress protein family BED32_09510 PF05247 Flagellar transcriptional activator (FlhD) BED32_09515 PF05280 Flagellar transcriptional activator (FlhC) BED32_09520 PF01618 MotA/TolQ/ExbB proton channel family BED32_09530 PF09078 CheY binding BED32_09530 PF02895 Signal transducing histidine kinase, homodimeric domain BED32_09530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_09530 PF01627 Hpt domain BED32_09530 PF01584 CheW-like domain BED32_09535 PF01584 CheW-like domain BED32_09540 PF00672 HAMP domain BED32_09540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_09540 PF02203 Tar ligand binding domain homologue BED32_09545 PF02203 Tar ligand binding domain homologue BED32_09545 PF00672 HAMP domain BED32_09545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_09550 PF03705 CheR methyltransferase, all-alpha domain BED32_09550 PF01739 CheR methyltransferase, SAM binding domain BED32_09555 PF00072 Response regulator receiver domain BED32_09555 PF01339 CheB methylesterase BED32_09560 PF00072 Response regulator receiver domain BED32_09565 PF04344 Chemotaxis phosphatase, CheZ BED32_09575 PF01312 FlhB HrpN YscU SpaS Family BED32_09580 PF00771 FHIPEP family BED32_09585 PF06366 Flagellar protein FlhE BED32_09595 PF05130 FlgN protein BED32_09600 PF04316 Anti-sigma-28 factor, FlgM BED32_09605 PF17656 FlgA N-terminal domain BED32_09605 PF13144 Chaperone for flagella basal body P-ring formation BED32_09615 PF01066 CDP-alcohol phosphatidyltransferase BED32_09635 PF04606 Ogr/Delta-like zinc finger BED32_09710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_09710 PF03466 LysR substrate binding domain BED32_09720 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_09730 PF06530 Phage antitermination protein Q BED32_09735 PF10753 Toxin GhoT_OrtT BED32_09745 PF00959 Phage lysozyme BED32_09750 PF00561 alpha/beta hydrolase fold BED32_09755 PF04391 Protein of unknown function (DUF533) BED32_09760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_09760 PF03466 LysR substrate binding domain BED32_09765 PF00144 Beta-lactamase BED32_09770 PF01926 50S ribosome-binding GTPase BED32_09770 PF06071 Protein of unknown function (DUF933) BED32_09780 PF01195 Peptidyl-tRNA hydrolase BED32_09785 PF10762 Protein of unknown function (DUF2583) BED32_09795 PF14572 Phosphoribosyl synthetase-associated domain BED32_09795 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BED32_09800 PF00288 GHMP kinases N terminal domain BED32_09800 PF08544 GHMP kinases C terminal BED32_09805 PF03550 Outer membrane lipoprotein LolB BED32_09810 PF01488 Shikimate / quinate 5-dehydrogenase BED32_09810 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BED32_09810 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BED32_09815 PF00472 RF-1 domain BED32_09815 PF03462 PCRF domain BED32_09820 PF17827 PrmC N-terminal domain BED32_09820 PF13847 Methyltransferase domain BED32_09825 PF04247 Invasion gene expression up-regulator, SirB BED32_09830 PF13369 Transglutaminase-like superfamily BED32_09835 PF00793 DAHP synthetase I family BED32_09840 PF01740 STAS domain BED32_09840 PF00916 Sulfate permease family BED32_09845 PF00990 Diguanylate cyclase, GGDEF domain BED32_09870 PF02811 PHP domain BED32_09875 PF02613 Nitrate reductase delta subunit BED32_09880 PF07273 Protein of unknown function (DUF1439) BED32_09885 PF07690 Major Facilitator Superfamily BED32_09900 PF13302 Acetyltransferase (GNAT) domain BED32_09905 PF04337 Protein of unknown function, DUF480 BED32_09910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED32_09915 PF03023 Lipid II flippase MurJ BED32_09920 PF01699 Sodium/calcium exchanger protein BED32_09930 PF07690 Major Facilitator Superfamily BED32_09935 PF01548 Transposase BED32_09935 PF02371 Transposase IS116/IS110/IS902 family BED32_09945 PF07730 Histidine kinase BED32_09945 PF00672 HAMP domain BED32_09945 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BED32_09945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_09950 PF02322 Cytochrome bd terminal oxidase subunit II BED32_09955 PF01654 Cytochrome bd terminal oxidase subunit I BED32_09960 PF00392 Bacterial regulatory proteins, gntR family BED32_09960 PF00155 Aminotransferase class I and II BED32_09970 PF04958 Arginine N-succinyltransferase beta subunit BED32_09975 PF00171 Aldehyde dehydrogenase family BED32_09980 PF04996 Succinylarginine dihydrolase BED32_09985 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BED32_09990 PF02371 Transposase IS116/IS110/IS902 family BED32_09990 PF01548 Transposase BED32_09995 PF00267 Gram-negative porin BED32_10000 PF00665 Integrase core domain BED32_10000 PF13333 Integrase core domain BED32_10000 PF13276 HTH-like domain BED32_10015 PF01979 Amidohydrolase family BED32_10020 PF00392 Bacterial regulatory proteins, gntR family BED32_10020 PF07702 UTRA domain BED32_10025 PF01979 Amidohydrolase family BED32_10055 PF01476 LysM domain BED32_10055 PF01551 Peptidase family M23 BED32_10060 PF01116 Fructose-bisphosphate aldolase class-II BED32_10065 PF01380 SIS domain BED32_10070 PF03610 PTS system fructose IIA component BED32_10075 PF03613 PTS system mannose/fructose/sorbose family IID component BED32_10085 PF03830 PTS system sorbose subfamily IIB component BED32_10090 PF08013 Tagatose 6 phosphate kinase BED32_10095 PF00455 DeoR C terminal sensor domain BED32_10095 PF08220 DeoR-like helix-turn-helix domain BED32_10105 PF02371 Transposase IS116/IS110/IS902 family BED32_10105 PF01548 Transposase BED32_10115 PF01479 S4 domain BED32_10115 PF00849 RNA pseudouridylate synthase BED32_10120 PF03616 Sodium/glutamate symporter BED32_10130 PF01548 Transposase BED32_10130 PF02371 Transposase IS116/IS110/IS902 family BED32_10135 PF01548 Transposase BED32_10135 PF02371 Transposase IS116/IS110/IS902 family BED32_10140 PF08003 Protein of unknown function (DUF1698) BED32_10145 PF13649 Methyltransferase domain BED32_10150 PF01124 MAPEG family BED32_10155 PF01904 Protein of unknown function DUF72 BED32_10160 PF00857 Isochorismatase family BED32_10165 PF01336 OB-fold nucleic acid binding domain BED32_10165 PF00152 tRNA synthetases class II (D, K and N) BED32_10165 PF02938 GAD domain BED32_10170 PF00293 NUDIX domain BED32_10175 PF01709 Transcriptional regulator BED32_10180 PF02075 Crossover junction endodeoxyribonuclease RuvC BED32_10185 PF07499 RuvA, C-terminal domain BED32_10185 PF01330 RuvA N terminal domain BED32_10190 PF05491 RuvB C-terminal winged helix domain BED32_10190 PF17864 RuvB AAA lid domain BED32_10190 PF05496 Holliday junction DNA helicase RuvB P-loop domain BED32_10195 PF00854 POT family BED32_10200 PF00950 ABC 3 transport family BED32_10205 PF00005 ABC transporter BED32_10210 PF01297 Zinc-uptake complex component A periplasmic BED32_10215 PF01476 LysM domain BED32_10215 PF08525 Opacity-associated protein A N-terminal motif BED32_10215 PF01551 Peptidase family M23 BED32_10220 PF03279 Bacterial lipid A biosynthesis acyltransferase BED32_10235 PF00224 Pyruvate kinase, barrel domain BED32_10235 PF02887 Pyruvate kinase, alpha/beta domain BED32_10240 PF01380 SIS domain BED32_10240 PF01418 Helix-turn-helix domain, rpiR family BED32_10245 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BED32_10245 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BED32_10250 PF01081 KDPG and KHG aldolase BED32_10255 PF00893 Small Multidrug Resistance protein BED32_10260 PF00893 Small Multidrug Resistance protein BED32_10265 PF01042 Endoribonuclease L-PSP BED32_10270 PF13307 Helicase C-terminal domain BED32_10270 PF04851 Type III restriction enzyme, res subunit BED32_10275 PF00814 Glycoprotease family BED32_10285 PF13193 AMP-binding enzyme C-terminal domain BED32_10285 PF00501 AMP-binding enzyme BED32_10290 PF01612 3'-5' exonuclease BED32_10290 PF00570 HRDC domain BED32_10295 PF03776 Septum formation topological specificity factor MinE BED32_10300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED32_10305 PF05209 Septum formation inhibitor MinC, N-terminal domain BED32_10305 PF03775 Septum formation inhibitor MinC, C-terminal domain BED32_10315 PF05166 YcgL domain BED32_10320 PF13406 Transglycosylase SLT domain BED32_10325 PF01557 Fumarylacetoacetate (FAA) hydrolase family BED32_10330 PF03692 Putative zinc- or iron-chelating domain BED32_10355 PF00924 Mechanosensitive ion channel BED32_10360 PF14834 Glutathione S-transferase, C-terminal domain BED32_10360 PF02798 Glutathione S-transferase, N-terminal domain BED32_10380 PF07351 Protein of unknown function (DUF1480) BED32_10410 PF07690 Major Facilitator Superfamily BED32_10415 PF03466 LysR substrate binding domain BED32_10415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_10420 PF02470 MlaD protein BED32_10425 PF04403 Paraquat-inducible protein A BED32_10430 PF13185 GAF domain BED32_10435 PF17516 ProQ C-terminal domain BED32_10435 PF04352 ProQ/FINO family BED32_10440 PF11818 C-terminal domain of tail specific protease (DUF3340) BED32_10440 PF00595 PDZ domain BED32_10440 PF03572 Peptidase family S41 BED32_10440 PF17804 Tail specific protease N-terminal domain BED32_10445 PF01435 Peptidase family M48 BED32_10460 PF14583 Oligogalacturonate lyase BED32_10465 PF09339 IclR helix-turn-helix domain BED32_10465 PF01614 Bacterial transcriptional regulator BED32_10470 PF01510 N-acetylmuramoyl-L-alanine amidase BED32_10480 PF04307 LexA-binding, inner membrane-associated putative hydrolase BED32_10490 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED32_10495 PF01547 Bacterial extracellular solute-binding protein BED32_10500 PF03459 TOBE domain BED32_10500 PF00005 ABC transporter BED32_10500 PF17912 MalK OB fold domain BED32_10505 PF00528 Binding-protein-dependent transport system inner membrane component BED32_10510 PF00528 Binding-protein-dependent transport system inner membrane component BED32_10515 PF06917 Periplasmic pectate lyase BED32_10525 PF04962 KduI/IolB family BED32_10530 PF07883 Cupin domain BED32_10535 PF00872 Transposase, Mutator family BED32_10540 PF13419 Haloacid dehalogenase-like hydrolase BED32_10545 PF14002 YniB-like protein BED32_10550 PF03466 LysR substrate binding domain BED32_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_10555 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BED32_10555 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BED32_10560 PF00378 Enoyl-CoA hydratase/isomerase BED32_10580 PF00950 ABC 3 transport family BED32_10585 PF00950 ABC 3 transport family BED32_10590 PF00005 ABC transporter BED32_10595 PF01297 Zinc-uptake complex component A periplasmic BED32_10600 PF01464 Transglycosylase SLT domain BED32_10605 PF01914 MarC family integral membrane protein BED32_10630 PF04474 Protein of unknown function (DUF554) BED32_10635 PF13619 KTSC domain BED32_10640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED32_10640 PF02824 TGS domain BED32_10640 PF03129 Anticodon binding domain BED32_10640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED32_10645 PF05198 Translation initiation factor IF-3, N-terminal domain BED32_10645 PF00707 Translation initiation factor IF-3, C-terminal domain BED32_10650 PF01632 Ribosomal protein L35 BED32_10655 PF00453 Ribosomal protein L20 BED32_10660 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BED32_10660 PF01409 tRNA synthetases class II core domain (F) BED32_10665 PF01588 Putative tRNA binding domain BED32_10665 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BED32_10665 PF03147 Ferredoxin-fold anticodon binding domain BED32_10665 PF03484 tRNA synthetase B5 domain BED32_10665 PF03483 B3/4 domain BED32_10670 PF00216 Bacterial DNA-binding protein BED32_10675 PF13592 Winged helix-turn helix BED32_10675 PF13358 DDE superfamily endonuclease BED32_10685 PF01032 FecCD transport family BED32_10690 PF00255 Glutathione peroxidase BED32_10695 PF00005 ABC transporter BED32_10700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED32_10705 PF00535 Glycosyl transferase family 2 BED32_10710 PF00551 Formyl transferase BED32_10710 PF02911 Formyl transferase, C-terminal domain BED32_10710 PF01370 NAD dependent epimerase/dehydratase family BED32_10715 PF01522 Polysaccharide deacetylase BED32_10720 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BED32_10725 PF00892 EamA-like transporter family BED32_10735 PF00877 NlpC/P60 family BED32_10745 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BED32_10760 PF00593 TonB dependent receptor BED32_10760 PF07715 TonB-dependent Receptor Plug Domain BED32_10765 PF10636 Hemin uptake protein hemP BED32_10770 PF00793 DAHP synthetase I family BED32_10775 PF03618 Kinase/pyrophosphorylase BED32_10780 PF02896 PEP-utilising enzyme, TIM barrel domain BED32_10780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BED32_10780 PF00391 PEP-utilising enzyme, mobile domain BED32_10790 PF01594 AI-2E family transporter BED32_10795 PF02913 FAD linked oxidases, C-terminal domain BED32_10795 PF13183 4Fe-4S dicluster domain BED32_10795 PF01565 FAD binding domain BED32_10800 PF03061 Thioesterase superfamily BED32_10805 PF01521 Iron-sulphur cluster biosynthesis BED32_10810 PF01458 Uncharacterized protein family (UPF0051) BED32_10815 PF00005 ABC transporter BED32_10820 PF01458 Uncharacterized protein family (UPF0051) BED32_10825 PF00266 Aminotransferase class-V BED32_10830 PF02657 Fe-S metabolism associated domain BED32_10835 PF03734 L,D-transpeptidase catalytic domain BED32_10835 PF01476 LysM domain BED32_10835 PF17969 L,D-transpeptidase C-terminal domain BED32_10840 PF04728 Lipoprotein leucine-zipper BED32_10845 PF00224 Pyruvate kinase, barrel domain BED32_10845 PF02887 Pyruvate kinase, alpha/beta domain BED32_10865 PF00677 Lumazine binding domain BED32_10875 PF07690 Major Facilitator Superfamily BED32_10880 PF03466 LysR substrate binding domain BED32_10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_10885 PF00356 Bacterial regulatory proteins, lacI family BED32_10890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED32_10890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED32_10895 PF00877 NlpC/P60 family BED32_10900 PF00462 Glutaredoxin BED32_10905 PF00929 Exonuclease BED32_10915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED32_10925 PF00440 Bacterial regulatory proteins, tetR family BED32_10925 PF16925 Tetracyclin repressor-like, C-terminal domain BED32_10930 PF00884 Sulfatase BED32_10930 PF08019 Phosphoethanolamine transferase EptA/EptB BED32_10935 PF06945 Protein of unknown function (DUF1289) BED32_10940 PF00248 Aldo/keto reductase family BED32_10945 PF04632 Fusaric acid resistance protein family BED32_10955 PF07869 Protein of unknown function (DUF1656) BED32_10960 PF01047 MarR family BED32_10965 PF05433 Glycine zipper 2TM domain BED32_10970 PF03702 Anhydro-N-acetylmuramic acid kinase BED32_10975 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BED32_10980 PF01243 Pyridoxamine 5'-phosphate oxidase BED32_10980 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BED32_10995 PF02798 Glutathione S-transferase, N-terminal domain BED32_10995 PF00043 Glutathione S-transferase, C-terminal domain BED32_11000 PF11656 YjbD family (DUF3811) BED32_11005 PF04893 Yip1 domain BED32_11015 PF01548 Transposase BED32_11015 PF02371 Transposase IS116/IS110/IS902 family BED32_11020 PF00854 POT family BED32_11025 PF03466 LysR substrate binding domain BED32_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_11040 PF00005 ABC transporter BED32_11045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_11045 PF00005 ABC transporter BED32_11050 PF00528 Binding-protein-dependent transport system inner membrane component BED32_11050 PF12911 N-terminal TM domain of oligopeptide transport permease C BED32_11055 PF00528 Binding-protein-dependent transport system inner membrane component BED32_11060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_11075 PF02954 Bacterial regulatory protein, Fis family BED32_11075 PF00158 Sigma-54 interaction domain BED32_11080 PF04012 PspA/IM30 family BED32_11085 PF06667 Phage shock protein B BED32_11090 PF04024 PspC domain BED32_11100 PF04317 YcjX-like family, DUF463 BED32_11105 PF05128 Domain of unknown function (DUF697) BED32_11120 PF18024 Helix-turn-helix domain BED32_11120 PF00158 Sigma-54 interaction domain BED32_11125 PF08534 Redoxin BED32_11130 PF13378 Enolase C-terminal domain-like BED32_11130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BED32_11135 PF00246 Zinc carboxypeptidase BED32_11140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_11145 PF01544 CorA-like Mg2+ transporter protein BED32_11150 PF01171 PP-loop family BED32_11155 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BED32_11165 PF00893 Small Multidrug Resistance protein BED32_11170 PF02308 MgtC family BED32_11175 PF03891 Domain of unknown function (DUF333) BED32_11180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED32_11180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED32_11185 PF11739 Dicarboxylate transport BED32_11190 PF13617 YnbE-like lipoprotein BED32_11195 PF07027 Protein of unknown function (DUF1318) BED32_11200 PF02525 Flavodoxin-like fold BED32_11205 PF04408 Helicase associated domain (HA2) BED32_11205 PF11898 Domain of unknown function (DUF3418) BED32_11205 PF00270 DEAD/DEAH box helicase BED32_11205 PF00271 Helicase conserved C-terminal domain BED32_11205 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BED32_11220 PF00089 Trypsin BED32_11230 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BED32_11235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_11235 PF00672 HAMP domain BED32_11235 PF00512 His Kinase A (phospho-acceptor) domain BED32_11240 PF00072 Response regulator receiver domain BED32_11240 PF00486 Transcriptional regulatory protein, C terminal BED32_11250 PF13520 Amino acid permease BED32_11255 PF07338 Protein of unknown function (DUF1471) BED32_11265 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BED32_11265 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BED32_11265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BED32_11270 PF02233 NAD(P) transhydrogenase beta subunit BED32_11275 PF00582 Universal stress protein family BED32_11280 PF13545 Crp-like helix-turn-helix domain BED32_11280 PF00027 Cyclic nucleotide-binding domain BED32_11285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED32_11285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED32_11300 PF06445 GyrI-like small molecule binding domain BED32_11330 PF13419 Haloacid dehalogenase-like hydrolase BED32_11335 PF01842 ACT domain BED32_11340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_11340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_11340 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_11350 PF01510 N-acetylmuramoyl-L-alanine amidase BED32_11390 PF03466 LysR substrate binding domain BED32_11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_11395 PF07690 Major Facilitator Superfamily BED32_11410 PF05472 DNA replication terminus site-binding protein (Ter protein) BED32_11420 PF10415 Fumarase C C-terminus BED32_11420 PF00206 Lyase BED32_11425 PF01238 Phosphomannose isomerase type I BED32_11430 PF06097 Bacterial protein of unknown function (DUF945) BED32_11440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_11440 PF00356 Bacterial regulatory proteins, lacI family BED32_11445 PF02378 Phosphotransferase system, EIIC BED32_11445 PF00367 phosphotransferase system, EIIB BED32_11450 PF00155 Aminotransferase class I and II BED32_11455 PF00962 Adenosine/AMP deaminase BED32_11460 PF13593 SBF-like CPA transporter family (DUF4137) BED32_11465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED32_11465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED32_11470 PF12833 Helix-turn-helix domain BED32_11470 PF02311 AraC-like ligand binding domain BED32_11480 PF00005 ABC transporter BED32_11485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_11490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED32_11495 PF11762 L-arabinose isomerase C-terminal domain BED32_11495 PF02610 L-arabinose isomerase BED32_11505 PF02463 RecF/RecN/SMC N terminal domain BED32_11530 PF10754 Protein of unknown function (DUF2569) BED32_11535 PF02508 Rnf-Nqr subunit, membrane protein BED32_11540 PF04060 Putative Fe-S cluster BED32_11545 PF10531 SLBB domain BED32_11545 PF13375 RnfC Barrel sandwich hybrid domain BED32_11545 PF13237 4Fe-4S dicluster domain BED32_11545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED32_11555 PF06445 GyrI-like small molecule binding domain BED32_11555 PF12833 Helix-turn-helix domain BED32_11560 PF03116 NQR2, RnfD, RnfE family BED32_11565 PF04205 FMN-binding domain BED32_11570 PF02508 Rnf-Nqr subunit, membrane protein BED32_11575 PF00730 HhH-GPD superfamily base excision DNA repair protein BED32_11575 PF00633 Helix-hairpin-helix motif BED32_11575 PF10576 Iron-sulfur binding domain of endonuclease III BED32_11650 PF00293 NUDIX domain BED32_11675 PF03245 Bacteriophage Rz lysis protein BED32_11740 PF01695 IstB-like ATP binding protein BED32_11765 PF00717 Peptidase S24-like BED32_11765 PF01381 Helix-turn-helix BED32_11820 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED32_11820 PF06630 Enterobacterial exodeoxyribonuclease VIII BED32_11840 PF08206 Ribonuclease B OB domain BED32_11840 PF00773 RNB domain BED32_11840 PF00575 S1 RNA binding domain BED32_11845 PF13722 5TM C-terminal transporter carbon starvation CstA BED32_11845 PF02554 Carbon starvation protein CstA BED32_11850 PF04328 Selenoprotein, putative BED32_11855 PF00923 Transaldolase/Fructose-6-phosphate aldolase BED32_11860 PF00455 DeoR C terminal sensor domain BED32_11860 PF08220 DeoR-like helix-turn-helix domain BED32_11870 PF00596 Class II Aldolase and Adducin N-terminal domain BED32_11875 PF05433 Glycine zipper 2TM domain BED32_11880 PF01253 Translation initiation factor SUI1 BED32_11885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BED32_11890 PF07338 Protein of unknown function (DUF1471) BED32_11895 PF03594 Benzoate membrane transport protein BED32_11900 PF01381 Helix-turn-helix BED32_11900 PF07883 Cupin domain BED32_11910 PF18073 Rubredoxin metal binding domain BED32_11915 PF06305 Lipopolysaccharide assembly protein A domain BED32_11920 PF01569 PAP2 superfamily BED32_11925 PF00925 GTP cyclohydrolase II BED32_11930 PF00694 Aconitase C-terminal domain BED32_11930 PF00330 Aconitase family (aconitate hydratase) BED32_11940 PF03466 LysR substrate binding domain BED32_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_11945 PF01751 Toprim domain BED32_11945 PF01396 Topoisomerase DNA binding C4 zinc finger BED32_11945 PF01131 DNA topoisomerase BED32_11945 PF08272 Topoisomerase I zinc-ribbon-like BED32_11950 PF10692 Protein of unknown function (DUF2498) BED32_11955 PF01343 Peptidase family S49 BED32_11955 PF08496 Peptidase family S49 N-terminal BED32_11960 PF00106 short chain dehydrogenase BED32_11965 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BED32_11965 PF12557 Cob(I)alamin adenosyltransferase N terminal BED32_11975 PF01479 S4 domain BED32_11975 PF00849 RNA pseudouridylate synthase BED32_11980 PF01300 Telomere recombination BED32_11985 PF02811 PHP domain BED32_11990 PF00425 chorismate binding enzyme BED32_11990 PF04715 Anthranilate synthase component I, N terminal region BED32_11995 PF00117 Glutamine amidotransferase class-I BED32_12000 PF00591 Glycosyl transferase family, a/b domain BED32_12000 PF02885 Glycosyl transferase family, helical bundle domain BED32_12005 PF00218 Indole-3-glycerol phosphate synthase BED32_12005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BED32_12010 PF00291 Pyridoxal-phosphate dependent enzyme BED32_12015 PF00290 Tryptophan synthase alpha chain BED32_12025 PF03922 OmpW family BED32_12030 PF03692 Putative zinc- or iron-chelating domain BED32_12045 PF04279 Intracellular septation protein A BED32_12050 PF03061 Thioesterase superfamily BED32_12055 PF03544 Gram-negative bacterial TonB protein C-terminal BED32_12060 PF03795 YCII-related domain BED32_12075 PF13091 PLD-like domain BED32_12075 PF13396 Phospholipase_D-nuclease N-terminal BED32_12080 PF04269 Protein of unknown function, DUF440 BED32_12085 PF00005 ABC transporter BED32_12085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_12090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_12090 PF00005 ABC transporter BED32_12095 PF12911 N-terminal TM domain of oligopeptide transport permease C BED32_12095 PF00528 Binding-protein-dependent transport system inner membrane component BED32_12100 PF00528 Binding-protein-dependent transport system inner membrane component BED32_12105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_12110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_12115 PF01914 MarC family integral membrane protein BED32_12120 PF00171 Aldehyde dehydrogenase family BED32_12120 PF00465 Iron-containing alcohol dehydrogenase BED32_12125 PF00265 Thymidine kinase BED32_12135 PF00816 H-NS histone family BED32_12140 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED32_12140 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED32_12140 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED32_12145 PF00072 Response regulator receiver domain BED32_12150 PF01734 Patatin-like phospholipase BED32_12160 PF02810 SEC-C motif BED32_12165 PF00551 Formyl transferase BED32_12165 PF01842 ACT domain BED32_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_12180 PF03466 LysR substrate binding domain BED32_12185 PF03372 Endonuclease/Exonuclease/phosphatase family BED32_12190 PF00293 NUDIX domain BED32_12195 PF07383 Protein of unknown function (DUF1496) BED32_12200 PF01751 Toprim domain BED32_12200 PF01131 DNA topoisomerase BED32_12205 PF02769 AIR synthase related protein, C-terminal domain BED32_12205 PF00586 AIR synthase related protein, N-terminal domain BED32_12210 PF00881 Nitroreductase family BED32_12215 PF01343 Peptidase family S49 BED32_12220 PF17763 Glutaminase/Asparaginase C-terminal domain BED32_12220 PF00710 Asparaginase, N-terminal BED32_12225 PF00857 Isochorismatase family BED32_12240 PF01641 SelR domain BED32_12245 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED32_12245 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED32_12250 PF01263 Aldose 1-epimerase BED32_12255 PF06629 MltA-interacting protein MipA BED32_12260 PF08298 PrkA AAA domain BED32_12260 PF06798 PrkA serine protein kinase C-terminal domain BED32_12265 PF04285 Protein of unknown function (DUF444) BED32_12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_12280 PF03466 LysR substrate binding domain BED32_12285 PF05726 Pirin C-terminal cupin domain BED32_12285 PF02678 Pirin BED32_12290 PF00563 EAL domain BED32_12290 PF00990 Diguanylate cyclase, GGDEF domain BED32_12290 PF13426 PAS domain BED32_12300 PF00842 Alanine racemase, C-terminal domain BED32_12300 PF01168 Alanine racemase, N-terminal domain BED32_12305 PF01266 FAD dependent oxidoreductase BED32_12310 PF04293 SpoVR like protein BED32_12315 PF07840 FadR C-terminal domain BED32_12315 PF00392 Bacterial regulatory proteins, gntR family BED32_12320 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BED32_12325 PF02600 Disulfide bond formation protein DsbB BED32_12345 PF03932 CutC family BED32_12350 PF06185 YecM protein BED32_12355 PF03485 Arginyl tRNA synthetase N terminal domain BED32_12355 PF00750 tRNA synthetases class I (R) BED32_12355 PF05746 DALR anticodon binding domain BED32_12365 PF02562 PhoH-like protein BED32_12380 PF13994 PgaD-like protein BED32_12385 PF00535 Glycosyl transferase family 2 BED32_12400 PF00557 Metallopeptidase family M24 BED32_12410 PF02272 DHHA1 domain BED32_12410 PF01411 tRNA synthetases class II (A) BED32_12410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED32_12420 PF09313 Domain of unknown function (DUF1971) BED32_12420 PF03848 Tellurite resistance protein TehB BED32_12430 PF00578 AhpC/TSA family BED32_12435 PF12704 MacB-like periplasmic core domain BED32_12435 PF00005 ABC transporter BED32_12435 PF02687 FtsX-like permease family BED32_12445 PF02687 FtsX-like permease family BED32_12445 PF00005 ABC transporter BED32_12445 PF12704 MacB-like periplasmic core domain BED32_12455 PF10634 Fe2+ transport protein BED32_12460 PF03239 Iron permease FTR1 family BED32_12475 PF04960 Glutaminase BED32_12480 PF01261 Xylose isomerase-like TIM barrel BED32_12485 PF00596 Class II Aldolase and Adducin N-terminal domain BED32_12490 PF07005 Sugar-binding N-terminal domain BED32_12490 PF17042 Nucleotide-binding C-terminal domain BED32_12495 PF08220 DeoR-like helix-turn-helix domain BED32_12495 PF00455 DeoR C terminal sensor domain BED32_12500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_12500 PF00989 PAS fold BED32_12500 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED32_12500 PF17203 Single cache domain 3 BED32_12505 PF00072 Response regulator receiver domain BED32_12510 PF03390 2-hydroxycarboxylate transporter family BED32_12515 PF00324 Amino acid permease BED32_12530 PF07690 Major Facilitator Superfamily BED32_12545 PF00872 Transposase, Mutator family BED32_12550 PF08242 Methyltransferase domain BED32_12555 PF00872 Transposase, Mutator family BED32_12600 PF00589 Phage integrase family BED32_12600 PF02899 Phage integrase, N-terminal SAM-like domain BED32_12605 PF10709 Protein of unknown function (DUF2511) BED32_12610 PF05425 Copper resistance protein D BED32_12615 PF04234 CopC domain BED32_12620 PF00210 Ferritin-like domain BED32_12625 PF06440 DNA polymerase III, theta subunit BED32_12630 PF00561 alpha/beta hydrolase fold BED32_12635 PF00929 Exonuclease BED32_12640 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BED32_12640 PF00326 Prolyl oligopeptidase family BED32_12645 PF13995 YebF-like protein BED32_12655 PF07130 YebG protein BED32_12660 PF03880 DbpA RNA binding domain BED32_12660 PF00270 DEAD/DEAH box helicase BED32_12660 PF00271 Helicase conserved C-terminal domain BED32_12665 PF02222 ATP-grasp domain BED32_12670 PF03701 Uncharacterised protein family (UPF0181) BED32_12675 PF04715 Anthranilate synthase component I, N terminal region BED32_12675 PF00425 chorismate binding enzyme BED32_12680 PF00293 NUDIX domain BED32_12685 PF03313 Serine dehydratase alpha chain BED32_12685 PF03315 Serine dehydratase beta chain BED32_12690 PF02371 Transposase IS116/IS110/IS902 family BED32_12690 PF01548 Transposase BED32_12695 PF03741 Integral membrane protein TerC family BED32_12695 PF03471 Transporter associated domain BED32_12700 PF03610 PTS system fructose IIA component BED32_12700 PF03830 PTS system sorbose subfamily IIB component BED32_12705 PF03609 PTS system sorbose-specific iic component BED32_12710 PF03613 PTS system mannose/fructose/sorbose family IID component BED32_12715 PF06173 Protein of unknown function (DUF986) BED32_12720 PF02659 Putative manganese efflux pump BED32_12725 PF07715 TonB-dependent Receptor Plug Domain BED32_12725 PF00593 TonB dependent receptor BED32_12730 PF08448 PAS fold BED32_12730 PF08447 PAS fold BED32_12730 PF05231 MASE1 BED32_12730 PF00990 Diguanylate cyclase, GGDEF domain BED32_12730 PF00563 EAL domain BED32_12730 PF13426 PAS domain BED32_12740 PF13847 Methyltransferase domain BED32_12745 PF00905 Penicillin binding protein transpeptidase domain BED32_12745 PF03717 Penicillin-binding Protein dimerisation domain BED32_12755 PF00313 'Cold-shock' DNA-binding domain BED32_12760 PF10736 Protein of unknown function (DUF2627) BED32_12765 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BED32_12785 PF13974 YebO-like protein BED32_12790 PF13996 YobH-like protein BED32_12795 PF10964 Protein of unknown function (DUF2766) BED32_12800 PF12833 Helix-turn-helix domain BED32_12810 PF13520 Amino acid permease BED32_12820 PF00664 ABC transporter transmembrane region BED32_12820 PF00005 ABC transporter BED32_12830 PF03372 Endonuclease/Exonuclease/phosphatase family BED32_12840 PF01590 GAF domain BED32_12840 PF00360 Phytochrome region BED32_12840 PF00990 Diguanylate cyclase, GGDEF domain BED32_12840 PF00563 EAL domain BED32_12850 PF06411 HdeA/HdeB family BED32_12855 PF07007 Lysozyme inhibitor LprI BED32_12865 PF00892 EamA-like transporter family BED32_12880 PF01638 HxlR-like helix-turn-helix BED32_12885 PF05368 NmrA-like family BED32_12890 PF01053 Cys/Met metabolism PLP-dependent enzyme BED32_12900 PF00717 Peptidase S24-like BED32_12905 PF00817 impB/mucB/samB family BED32_12905 PF13438 Domain of unknown function (DUF4113) BED32_12905 PF11799 impB/mucB/samB family C-terminal domain BED32_12910 PF08447 PAS fold BED32_12910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_12920 PF00356 Bacterial regulatory proteins, lacI family BED32_12920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_12925 PF08244 Glycosyl hydrolases family 32 C terminal BED32_12925 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED32_12930 PF01306 LacY proton/sugar symporter BED32_12945 PF00180 Isocitrate/isopropylmalate dehydrogenase BED32_12975 PF00180 Isocitrate/isopropylmalate dehydrogenase BED32_12980 PF00849 RNA pseudouridylate synthase BED32_12985 PF00293 NUDIX domain BED32_12995 PF04356 Protein of unknown function (DUF489) BED32_13000 PF00206 Lyase BED32_13000 PF08328 Adenylosuccinate lyase C-terminal BED32_13010 PF00072 Response regulator receiver domain BED32_13010 PF00486 Transcriptional regulatory protein, C terminal BED32_13015 PF08918 PhoQ Sensor BED32_13015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_13025 PF01546 Peptidase family M20/M25/M40 BED32_13025 PF07687 Peptidase dimerisation domain BED32_13030 PF02146 Sir2 family BED32_13040 PF12704 MacB-like periplasmic core domain BED32_13040 PF02687 FtsX-like permease family BED32_13045 PF00005 ABC transporter BED32_13050 PF02687 FtsX-like permease family BED32_13050 PF12704 MacB-like periplasmic core domain BED32_13055 PF03461 TRCF domain BED32_13055 PF00271 Helicase conserved C-terminal domain BED32_13055 PF00270 DEAD/DEAH box helicase BED32_13055 PF02559 CarD-like/TRCF domain BED32_13055 PF17757 UvrB interaction domain BED32_13060 PF05433 Glycine zipper 2TM domain BED32_13065 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_13070 PF05728 Uncharacterised protein family (UPF0227) BED32_13075 PF00933 Glycosyl hydrolase family 3 N terminal domain BED32_13080 PF01636 Phosphotransferase enzyme family BED32_13085 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED32_13085 PF13036 Peptidoglycan-synthase activator LpoB BED32_13090 PF07233 Protein of unknown function (DUF1425) BED32_13095 PF01230 HIT domain BED32_13100 PF08501 Shikimate dehydrogenase substrate binding domain BED32_13105 PF12793 Sugar transport-related sRNA regulator N-term BED32_13105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_13110 PF04055 Radical SAM superfamily BED32_13110 PF13186 Iron-sulfur cluster-binding domain BED32_13120 PF03412 Peptidase C39 family BED32_13120 PF00005 ABC transporter BED32_13120 PF00664 ABC transporter transmembrane region BED32_13130 PF02378 Phosphotransferase system, EIIC BED32_13130 PF00367 phosphotransferase system, EIIB BED32_13135 PF01026 TatD related DNase BED32_13140 PF09115 DNA polymerase III, delta subunit, C terminal BED32_13145 PF02223 Thymidylate kinase BED32_13150 PF02618 YceG-like family BED32_13155 PF01063 Amino-transferase class IV BED32_13160 PF02801 Beta-ketoacyl synthase, C-terminal domain BED32_13160 PF00109 Beta-ketoacyl synthase, N-terminal domain BED32_13165 PF00550 Phosphopantetheine attachment site BED32_13175 PF00698 Acyl transferase domain BED32_13180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BED32_13180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BED32_13185 PF02504 Fatty acid synthesis protein BED32_13190 PF01783 Ribosomal L32p protein family BED32_13195 PF02620 Large ribosomal RNA subunit accumulation protein YceD BED32_13200 PF02545 Maf-like protein BED32_13205 PF01479 S4 domain BED32_13205 PF00849 RNA pseudouridylate synthase BED32_13210 PF12111 Polyribonucleotide phosphorylase C terminal BED32_13210 PF10150 Ribonuclease E/G family BED32_13210 PF00575 S1 RNA binding domain BED32_13215 PF03992 Antibiotic biosynthesis monooxygenase BED32_13220 PF01979 Amidohydrolase family BED32_13225 PF06183 DinI-like family BED32_13230 PF13991 BssS protein family BED32_13235 PF01266 FAD dependent oxidoreductase BED32_13240 PF00196 Bacterial regulatory proteins, luxR family BED32_13245 PF01594 AI-2E family transporter BED32_13260 PF03916 Polysulphide reductase, NrfD BED32_13265 PF13247 4Fe-4S dicluster domain BED32_13275 PF00072 Response regulator receiver domain BED32_13275 PF00196 Bacterial regulatory proteins, luxR family BED32_13280 PF03279 Bacterial lipid A biosynthesis acyltransferase BED32_13285 PF18807 Tripartite Tc toxins repeat BED32_13285 PF05785 Rho-activating domain of cytotoxic necrotizing factor BED32_13290 PF07681 DoxX BED32_13300 PF07690 Major Facilitator Superfamily BED32_13305 PF00854 POT family BED32_13310 PF00535 Glycosyl transferase family 2 BED32_13315 PF04349 Periplasmic glucan biosynthesis protein, MdoG BED32_13320 PF01757 Acyltransferase family BED32_13330 PF01548 Transposase BED32_13330 PF02371 Transposase IS116/IS110/IS902 family BED32_13335 PF02080 TrkA-C domain BED32_13335 PF00999 Sodium/hydrogen exchanger family BED32_13335 PF03471 Transporter associated domain BED32_13345 PF00765 Autoinducer synthase BED32_13350 PF00196 Bacterial regulatory proteins, luxR family BED32_13350 PF03472 Autoinducer binding domain BED32_13365 PF08534 Redoxin BED32_13375 PF03916 Polysulphide reductase, NrfD BED32_13380 PF13247 4Fe-4S dicluster domain BED32_13380 PF00037 4Fe-4S binding domain BED32_13385 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BED32_13385 PF13435 Cytochrome c554 and c-prime BED32_13390 PF02335 Cytochrome c552 BED32_13400 PF04358 DsrC like protein BED32_13405 PF00708 Acylphosphatase BED32_13420 PF17785 PUA-like domain BED32_13420 PF10672 S-adenosylmethionine-dependent methyltransferase BED32_13425 PF08755 Hemimethylated DNA-binding protein YccV like BED32_13430 PF13380 CoA binding domain BED32_13435 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BED32_13440 PF02142 MGS-like domain BED32_13445 PF12462 DNA helicase IV / RNA helicase N terminal BED32_13445 PF00580 UvrD/REP helicase N-terminal domain BED32_13445 PF13361 UvrD-like helicase C-terminal domain BED32_13450 PF03733 Inner membrane component domain BED32_13455 PF12805 FUSC-like inner membrane protein yccS BED32_13460 PF04993 TfoX N-terminal domain BED32_13460 PF04994 TfoX C-terminal domain BED32_13470 PF00691 OmpA family BED32_13470 PF01389 OmpA-like transmembrane domain BED32_13475 PF06303 MatP N-terminal domain BED32_13475 PF17414 MatP C-terminal ribbon-helix-helix domain BED32_13480 PF05362 Lon protease (S16) C-terminal proteolytic domain BED32_13480 PF13654 AAA domain BED32_13485 PF07977 FabA-like domain BED32_13495 PF00109 Beta-ketoacyl synthase, N-terminal domain BED32_13495 PF02801 Beta-ketoacyl synthase, C-terminal domain BED32_13500 PF03886 ABC-type transport auxiliary lipoprotein component BED32_13505 PF02470 MlaD protein BED32_13510 PF04403 Paraquat-inducible protein A BED32_13515 PF16326 ABC transporter C-terminal domain BED32_13515 PF00005 ABC transporter BED32_13515 PF12848 ABC transporter BED32_13520 PF01170 Putative RNA methylase family UPF0020 BED32_13520 PF02926 THUMP domain BED32_13520 PF10672 S-adenosylmethionine-dependent methyltransferase BED32_13525 PF03476 MOSC N-terminal beta barrel domain BED32_13525 PF03473 MOSC domain BED32_13525 PF00111 2Fe-2S iron-sulfur cluster binding domain BED32_13530 PF07126 Cell-division protein ZapC BED32_13535 PF01180 Dihydroorotate dehydrogenase BED32_13540 PF11940 Domain of unknown function (DUF3458) Ig-like fold BED32_13540 PF01433 Peptidase family M1 domain BED32_13540 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BED32_13545 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BED32_13545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BED32_13550 PF01336 OB-fold nucleic acid binding domain BED32_13550 PF00152 tRNA synthetases class II (D, K and N) BED32_13555 PF00267 Gram-negative porin BED32_13560 PF00155 Aminotransferase class I and II BED32_13570 PF00753 Metallo-beta-lactamase superfamily BED32_13575 PF05951 Bacterial protein of unknown function (DUF882) BED32_13580 PF01471 Putative peptidoglycan binding domain BED32_13580 PF03734 L,D-transpeptidase catalytic domain BED32_13585 PF04310 MukB N-terminal BED32_13585 PF16330 MukB hinge domain BED32_13590 PF04288 MukE-like family BED32_13595 PF03882 MukF winged-helix domain BED32_13595 PF17193 MukF C-terminal domain BED32_13595 PF17192 MukF middle domain BED32_13605 PF02698 DUF218 domain BED32_13610 PF01636 Phosphotransferase enzyme family BED32_13615 PF02348 Cytidylyltransferase BED32_13620 PF03966 Trm112p-like protein BED32_13625 PF00313 'Cold-shock' DNA-binding domain BED32_13630 PF00313 'Cold-shock' DNA-binding domain BED32_13635 PF07063 Domain of unknown function (DUF1338) BED32_13640 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BED32_13645 PF00005 ABC transporter BED32_13645 PF00664 ABC transporter transmembrane region BED32_13650 PF00753 Metallo-beta-lactamase superfamily BED32_13650 PF03772 Competence protein BED32_13655 PF00216 Bacterial DNA-binding protein BED32_13660 PF00575 S1 RNA binding domain BED32_13665 PF02224 Cytidylate kinase BED32_13670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED32_13675 PF00266 Aminotransferase class-V BED32_13680 PF04239 Protein of unknown function (DUF421) BED32_13685 PF00710 Asparaginase, N-terminal BED32_13685 PF17763 Glutaminase/Asparaginase C-terminal domain BED32_13690 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BED32_13690 PF18381 YcaO cyclodehydratase C-terminal domain BED32_13695 PF01226 Formate/nitrite transporter BED32_13700 PF01228 Glycine radical BED32_13700 PF02901 Pyruvate formate lyase-like BED32_13705 PF04055 Radical SAM superfamily BED32_13710 PF07690 Major Facilitator Superfamily BED32_13715 PF00872 Transposase, Mutator family BED32_13725 PF01548 Transposase BED32_13725 PF02371 Transposase IS116/IS110/IS902 family BED32_13730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED32_13730 PF02403 Seryl-tRNA synthetase N-terminal domain BED32_13735 PF12002 MgsA AAA+ ATPase C terminal BED32_13735 PF00004 ATPase family associated with various cellular activities (AAA) BED32_13735 PF16193 AAA C-terminal domain BED32_13740 PF03548 Outer membrane lipoprotein carrier protein LolA BED32_13745 PF17854 FtsK alpha domain BED32_13745 PF01580 FtsK/SpoIIIE family BED32_13745 PF09397 Ftsk gamma domain BED32_13745 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BED32_13750 PF01037 Lrp/AsnC ligand binding domain BED32_13755 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_13760 PF00664 ABC transporter transmembrane region BED32_13760 PF00005 ABC transporter BED32_13765 PF00664 ABC transporter transmembrane region BED32_13765 PF00005 ABC transporter BED32_13770 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BED32_13775 PF01176 Translation initiation factor 1A / IF-1 BED32_13780 PF07724 AAA domain (Cdc48 subfamily) BED32_13780 PF00004 ATPase family associated with various cellular activities (AAA) BED32_13780 PF17871 AAA lid domain BED32_13780 PF02861 Clp amino terminal domain, pathogenicity island component BED32_13780 PF10431 C-terminal, D2-small domain, of ClpB protein BED32_13785 PF02617 ATP-dependent Clp protease adaptor protein ClpS BED32_13790 PF00313 'Cold-shock' DNA-binding domain BED32_13795 PF00005 ABC transporter BED32_13795 PF02687 FtsX-like permease family BED32_13795 PF12704 MacB-like periplasmic core domain BED32_13800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_13805 PF04393 Protein of unknown function (DUF535) BED32_13810 PF11398 Protein of unknown function (DUF2813) BED32_13815 PF03956 Lysine exporter LysO BED32_13820 PF03063 Prismane/CO dehydrogenase family BED32_13825 PF00111 2Fe-2S iron-sulfur cluster binding domain BED32_13825 PF00970 Oxidoreductase FAD-binding domain BED32_13825 PF00175 Oxidoreductase NAD-binding domain BED32_13830 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_13830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_13830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_13835 PF04072 Leucine carboxyl methyltransferase BED32_13840 PF01212 Beta-eliminating lyase BED32_13845 PF13460 NAD(P)H-binding BED32_13845 PF11066 Protein of unknown function (DUF2867) BED32_13850 PF01370 NAD dependent epimerase/dehydratase family BED32_13855 PF12883 Protein of unknown function (DUF3828) BED32_13860 PF00005 ABC transporter BED32_13865 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_13870 PF00528 Binding-protein-dependent transport system inner membrane component BED32_13875 PF00528 Binding-protein-dependent transport system inner membrane component BED32_13880 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_13885 PF05958 tRNA (Uracil-5-)-methyltransferase BED32_13890 PF10767 Protein of unknown function (DUF2593) BED32_13895 PF00528 Binding-protein-dependent transport system inner membrane component BED32_13900 PF00528 Binding-protein-dependent transport system inner membrane component BED32_13905 PF00005 ABC transporter BED32_13905 PF08402 TOBE domain BED32_13910 PF13416 Bacterial extracellular solute-binding protein BED32_13915 PF10722 Putative bacterial sensory transduction regulator BED32_13920 PF07214 Protein of unknown function (DUF1418) BED32_13925 PF00462 Glutaredoxin BED32_13930 PF02080 TrkA-C domain BED32_13930 PF06826 Predicted Permease Membrane Region BED32_13940 PF01569 PAP2 superfamily BED32_13945 PF01791 DeoC/LacD family aldolase BED32_13950 PF08220 DeoR-like helix-turn-helix domain BED32_13950 PF00455 DeoR C terminal sensor domain BED32_13960 PF03313 Serine dehydratase alpha chain BED32_13960 PF03315 Serine dehydratase beta chain BED32_13965 PF02371 Transposase IS116/IS110/IS902 family BED32_13965 PF01548 Transposase BED32_13970 PF00768 D-alanyl-D-alanine carboxypeptidase BED32_13970 PF07943 Penicillin-binding protein 5, C-terminal domain BED32_13975 PF00291 Pyridoxal-phosphate dependent enzyme BED32_13975 PF00571 CBS domain BED32_13980 PF01053 Cys/Met metabolism PLP-dependent enzyme BED32_13985 PF00528 Binding-protein-dependent transport system inner membrane component BED32_13990 PF09383 NIL domain BED32_13990 PF00005 ABC transporter BED32_13995 PF03180 NLPA lipoprotein BED32_14010 PF13417 Glutathione S-transferase, N-terminal domain BED32_14010 PF00043 Glutathione S-transferase, C-terminal domain BED32_14015 PF00593 TonB dependent receptor BED32_14015 PF07715 TonB-dependent Receptor Plug Domain BED32_14020 PF00005 ABC transporter BED32_14025 PF01032 FecCD transport family BED32_14030 PF00324 Amino acid permease BED32_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_14035 PF03466 LysR substrate binding domain BED32_14050 PF03601 Conserved hypothetical protein 698 BED32_14055 PF01261 Xylose isomerase-like TIM barrel BED32_14060 PF00577 Outer membrane usher protein BED32_14060 PF13954 PapC N-terminal domain BED32_14060 PF13953 PapC C-terminal domain BED32_14065 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_14065 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_14075 PF17550 Family of unknown function BED32_14080 PF00486 Transcriptional regulatory protein, C terminal BED32_14085 PF02378 Phosphotransferase system, EIIC BED32_14085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED32_14090 PF00294 pfkB family carbohydrate kinase BED32_14095 PF00381 PTS HPr component phosphorylation site BED32_14095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_14100 PF13344 Haloacid dehalogenase-like hydrolase BED32_14100 PF00293 NUDIX domain BED32_14105 PF03264 NapC/NirT cytochrome c family, N-terminal region BED32_14110 PF18364 Molybdopterin oxidoreductase N-terminal domain BED32_14110 PF00384 Molybdopterin oxidoreductase BED32_14110 PF01568 Molydopterin dinucleotide binding domain BED32_14115 PF03692 Putative zinc- or iron-chelating domain BED32_14120 PF03222 Tryptophan/tyrosine permease family BED32_14125 PF08207 Elongation factor P (EF-P) KOW-like domain BED32_14125 PF09285 Elongation factor P, C-terminal BED32_14125 PF01132 Elongation factor P (EF-P) OB domain BED32_14130 PF03786 D-mannonate dehydratase (UxuA) BED32_14140 PF08125 Mannitol dehydrogenase C-terminal domain BED32_14140 PF01232 Mannitol dehydrogenase Rossmann domain BED32_14145 PF00392 Bacterial regulatory proteins, gntR family BED32_14145 PF07729 FCD domain BED32_14155 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED32_14155 PF07683 Cobalamin synthesis protein cobW C-terminal domain BED32_14160 PF01569 PAP2 superfamily BED32_14165 PF00877 NlpC/P60 family BED32_14175 PF12792 CSS motif domain associated with EAL BED32_14175 PF00563 EAL domain BED32_14180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_14185 PF00528 Binding-protein-dependent transport system inner membrane component BED32_14190 PF00528 Binding-protein-dependent transport system inner membrane component BED32_14190 PF12911 N-terminal TM domain of oligopeptide transport permease C BED32_14195 PF00005 ABC transporter BED32_14195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_14200 PF13989 YejG-like protein BED32_14205 PF07690 Major Facilitator Superfamily BED32_14210 PF00849 RNA pseudouridylate synthase BED32_14210 PF01479 S4 domain BED32_14215 PF00271 Helicase conserved C-terminal domain BED32_14215 PF04851 Type III restriction enzyme, res subunit BED32_14220 PF01386 Ribosomal L25p family BED32_14225 PF04245 37-kD nucleoid-associated bacterial protein BED32_14230 PF07208 Protein of unknown function (DUF1414) BED32_14235 PF11893 Domain of unknown function (DUF3413) BED32_14235 PF00884 Sulfatase BED32_14255 PF00872 Transposase, Mutator family BED32_14265 PF01527 Transposase BED32_14285 PF00194 Eukaryotic-type carbonic anhydrase BED32_14290 PF00232 Glycosyl hydrolase family 1 BED32_14295 PF02378 Phosphotransferase system, EIIC BED32_14295 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED32_14295 PF00367 phosphotransferase system, EIIB BED32_14300 PF01380 SIS domain BED32_14300 PF01418 Helix-turn-helix domain, rpiR family BED32_14320 PF06530 Phage antitermination protein Q BED32_14330 PF06183 DinI-like family BED32_14335 PF01278 Omptin family BED32_14340 PF02743 Cache domain BED32_14340 PF00672 HAMP domain BED32_14340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_14345 PF12706 Beta-lactamase superfamily domain BED32_14355 PF00144 Beta-lactamase BED32_14370 PF00267 Gram-negative porin BED32_14385 PF07690 Major Facilitator Superfamily BED32_14390 PF01627 Hpt domain BED32_14390 PF16359 RcsD-ABL domain BED32_14390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_14395 PF00196 Bacterial regulatory proteins, luxR family BED32_14395 PF00072 Response regulator receiver domain BED32_14400 PF00072 Response regulator receiver domain BED32_14400 PF09456 RcsC Alpha-Beta-Loop (ABL) BED32_14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_14400 PF00512 His Kinase A (phospho-acceptor) domain BED32_14405 PF00521 DNA gyrase/topoisomerase IV, subunit A BED32_14405 PF03989 DNA gyrase C-terminal domain, beta-propeller BED32_14415 PF02867 Ribonucleotide reductase, barrel domain BED32_14415 PF03477 ATP cone domain BED32_14415 PF00317 Ribonucleotide reductase, all-alpha domain BED32_14420 PF00268 Ribonucleotide reductase, small chain BED32_14430 PF03974 Ecotin BED32_14445 PF00994 Probable molybdopterin binding domain BED32_14450 PF03222 Tryptophan/tyrosine permease family BED32_14455 PF07437 YfaZ precursor BED32_14460 PF06628 Catalase-related immune-responsive BED32_14460 PF00199 Catalase BED32_14465 PF13193 AMP-binding enzyme C-terminal domain BED32_14465 PF00501 AMP-binding enzyme BED32_14470 PF13378 Enolase C-terminal domain-like BED32_14475 PF00378 Enoyl-CoA hydratase/isomerase BED32_14480 PF12697 Alpha/beta hydrolase family BED32_14485 PF16582 Middle domain of thiamine pyrophosphate BED32_14485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_14485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_14490 PF00425 chorismate binding enzyme BED32_14495 PF05957 Bacterial protein of unknown function (DUF883) BED32_14500 PF00920 Dehydratase family BED32_14505 PF03928 Haem-degrading BED32_14510 PF07690 Major Facilitator Superfamily BED32_14515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED32_14515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED32_14520 PF00356 Bacterial regulatory proteins, lacI family BED32_14525 PF00106 short chain dehydrogenase BED32_14530 PF01202 Shikimate kinase BED32_14540 PF06496 Protein of unknown function (DUF1097) BED32_14550 PF00361 Proton-conducting membrane transporter BED32_14555 PF00361 Proton-conducting membrane transporter BED32_14560 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED32_14560 PF00361 Proton-conducting membrane transporter BED32_14565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED32_14570 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BED32_14575 PF12838 4Fe-4S dicluster domain BED32_14580 PF00146 NADH dehydrogenase BED32_14585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED32_14585 PF00384 Molybdopterin oxidoreductase BED32_14585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED32_14585 PF01568 Molydopterin dinucleotide binding domain BED32_14590 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED32_14590 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED32_14590 PF10531 SLBB domain BED32_14600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED32_14600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED32_14605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED32_14610 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BED32_14615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_14615 PF03466 LysR substrate binding domain BED32_14620 PF00155 Aminotransferase class I and II BED32_14630 PF02080 TrkA-C domain BED32_14630 PF03600 Citrate transporter BED32_14640 PF13419 Haloacid dehalogenase-like hydrolase BED32_14645 PF03887 YfbU domain BED32_14650 PF04217 Protein of unknown function, DUF412 BED32_14655 PF00871 Acetokinase family BED32_14660 PF07085 DRTGG domain BED32_14660 PF01515 Phosphate acetyl/butaryl transferase BED32_14665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_14665 PF00356 Bacterial regulatory proteins, lacI family BED32_14670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_14680 PF03611 PTS system sugar-specific permease component BED32_14685 PF02371 Transposase IS116/IS110/IS902 family BED32_14685 PF01548 Transposase BED32_14690 PF00293 NUDIX domain BED32_14705 PF08338 Domain of unknown function (DUF1731) BED32_14705 PF01370 NAD dependent epimerase/dehydratase family BED32_14715 PF00005 ABC transporter BED32_14720 PF00528 Binding-protein-dependent transport system inner membrane component BED32_14725 PF00528 Binding-protein-dependent transport system inner membrane component BED32_14730 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_14735 PF02441 Flavoprotein BED32_14740 PF00156 Phosphoribosyl transferase domain BED32_14745 PF02674 Colicin V production protein BED32_14750 PF05036 Sporulation related domain BED32_14755 PF02875 Mur ligase family, glutamate ligase domain BED32_14755 PF08245 Mur ligase middle domain BED32_14760 PF17848 Acetyl-coA carboxylase zinc finger domain BED32_14760 PF01039 Carboxyl transferase domain BED32_14765 PF09335 SNARE associated Golgi protein BED32_14770 PF01416 tRNA pseudouridine synthase BED32_14775 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED32_14775 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED32_14780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED32_14780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED32_14780 PF11890 Domain of unknown function (DUF3410) BED32_14795 PF00892 EamA-like transporter family BED32_14800 PF00155 Aminotransferase class I and II BED32_14805 PF00578 AhpC/TSA family BED32_14815 PF11412 Disulphide bond corrector protein DsbC BED32_14815 PF02683 Cytochrome C biogenesis protein transmembrane region BED32_14830 PF03600 Citrate transporter BED32_14835 PF00328 Histidine phosphatase superfamily (branch 2) BED32_14840 PF00356 Bacterial regulatory proteins, lacI family BED32_14845 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED32_14850 PF02378 Phosphotransferase system, EIIC BED32_14855 PF00232 Glycosyl hydrolase family 1 BED32_14860 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED32_14870 PF01177 Asp/Glu/Hydantoin racemase BED32_14880 PF02801 Beta-ketoacyl synthase, C-terminal domain BED32_14880 PF00109 Beta-ketoacyl synthase, N-terminal domain BED32_14885 PF01266 FAD dependent oxidoreductase BED32_14885 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BED32_14890 PF08891 YfcL protein BED32_14895 PF04315 Elongation factor P hydroxylase BED32_14900 PF01925 Sulfite exporter TauE/SafE BED32_14905 PF03411 Penicillin-insensitive murein endopeptidase BED32_14910 PF01264 Chorismate synthase BED32_14915 PF05175 Methyltransferase small domain BED32_14920 PF01713 Smr domain BED32_14925 PF00300 Histidine phosphatase superfamily (branch 1) BED32_14930 PF00378 Enoyl-CoA hydratase/isomerase BED32_14930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED32_14930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED32_14935 PF02803 Thiolase, C-terminal domain BED32_14935 PF00108 Thiolase, N-terminal domain BED32_14940 PF04175 Protein of unknown function (DUF406) BED32_14945 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BED32_14950 PF04333 MlaA lipoprotein BED32_14955 PF03918 Cytochrome C biogenesis protein BED32_14960 PF03918 Cytochrome C biogenesis protein BED32_14965 PF08534 Redoxin BED32_14970 PF01578 Cytochrome C assembly protein BED32_14970 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BED32_14975 PF03100 CcmE BED32_14980 PF04995 Heme exporter protein D (CcmD) BED32_14985 PF01578 Cytochrome C assembly protein BED32_14990 PF03379 CcmB protein BED32_14995 PF00005 ABC transporter BED32_15000 PF02371 Transposase IS116/IS110/IS902 family BED32_15000 PF01548 Transposase BED32_15005 PF01226 Formate/nitrite transporter BED32_15015 PF00589 Phage integrase family BED32_15015 PF13356 Arm DNA-binding domain BED32_15015 PF14659 Phage integrase, N-terminal SAM-like domain BED32_15075 PF08274 PhnA Zinc-Ribbon BED32_15075 PF03831 PhnA domain BED32_15080 PF03551 Transcriptional regulator PadR-like family BED32_15090 PF00232 Glycosyl hydrolase family 1 BED32_15095 PF00367 phosphotransferase system, EIIB BED32_15095 PF02378 Phosphotransferase system, EIIC BED32_15100 PF00356 Bacterial regulatory proteins, lacI family BED32_15105 PF04264 YceI-like domain BED32_15110 PF01292 Prokaryotic cytochrome b561 BED32_15115 PF07859 alpha/beta hydrolase fold BED32_15115 PF13472 GDSL-like Lipase/Acylhydrolase family BED32_15135 PF00005 ABC transporter BED32_15140 PF02405 Permease MlaE BED32_15145 PF07690 Major Facilitator Superfamily BED32_15155 PF07969 Amidohydrolase family BED32_15160 PF00324 Amino acid permease BED32_15165 PF13406 Transglycosylase SLT domain BED32_15175 PF00528 Binding-protein-dependent transport system inner membrane component BED32_15180 PF00005 ABC transporter BED32_15200 PF01292 Prokaryotic cytochrome b561 BED32_15205 PF00155 Aminotransferase class I and II BED32_15215 PF07350 Protein of unknown function (DUF1479) BED32_15225 PF00072 Response regulator receiver domain BED32_15225 PF04397 LytTr DNA-binding domain BED32_15235 PF02685 Glucokinase BED32_15245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_15245 PF03466 LysR substrate binding domain BED32_15250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_15250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_15250 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_15255 PF00248 Aldo/keto reductase family BED32_15265 PF01566 Natural resistance-associated macrophage protein BED32_15270 PF07670 Nucleoside recognition BED32_15270 PF01773 Na+ dependent nucleoside transporter N-terminus BED32_15270 PF07662 Na+ dependent nucleoside transporter C-terminus BED32_15300 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED32_15325 PF12843 Putative quorum-sensing-regulated virulence factor BED32_15330 PF01653 NAD-dependent DNA ligase adenylation domain BED32_15330 PF03120 NAD-dependent DNA ligase OB-fold domain BED32_15330 PF00533 BRCA1 C Terminus (BRCT) domain BED32_15330 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BED32_15330 PF12826 Helix-hairpin-helix motif BED32_15335 PF04354 ZipA, C-terminal FtsZ-binding domain BED32_15345 PF00291 Pyridoxal-phosphate dependent enzyme BED32_15350 PF00381 PTS HPr component phosphorylation site BED32_15355 PF05524 PEP-utilising enzyme, N-terminal BED32_15355 PF00391 PEP-utilising enzyme, mobile domain BED32_15355 PF02896 PEP-utilising enzyme, TIM barrel domain BED32_15360 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED32_15365 PF00672 HAMP domain BED32_15365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_15365 PF00512 His Kinase A (phospho-acceptor) domain BED32_15365 PF16527 Two-component sensor protein CpxA, periplasmic domain BED32_15370 PF00486 Transcriptional regulatory protein, C terminal BED32_15370 PF00072 Response regulator receiver domain BED32_15375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_15380 PF12704 MacB-like periplasmic core domain BED32_15380 PF02687 FtsX-like permease family BED32_15380 PF00005 ABC transporter BED32_15385 PF00291 Pyridoxal-phosphate dependent enzyme BED32_15390 PF00005 ABC transporter BED32_15395 PF00528 Binding-protein-dependent transport system inner membrane component BED32_15400 PF00528 Binding-protein-dependent transport system inner membrane component BED32_15410 PF07690 Major Facilitator Superfamily BED32_15415 PF01418 Helix-turn-helix domain, rpiR family BED32_15415 PF01380 SIS domain BED32_15420 PF04074 YhcH/YjgK/YiaL BED32_15425 PF00480 ROK family BED32_15430 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BED32_15435 PF00701 Dihydrodipicolinate synthetase family BED32_15440 PF01548 Transposase BED32_15440 PF02371 Transposase IS116/IS110/IS902 family BED32_15445 PF04261 Dyp-type peroxidase family BED32_15450 PF06572 Protein of unknown function (DUF1131) BED32_15455 PF04076 Bacterial OB fold (BOF) protein BED32_15460 PF00583 Acetyltransferase (GNAT) family BED32_15465 PF01218 Coproporphyrinogen III oxidase BED32_15470 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BED32_15480 PF03949 Malic enzyme, NAD binding domain BED32_15480 PF01515 Phosphate acetyl/butaryl transferase BED32_15480 PF00390 Malic enzyme, N-terminal domain BED32_15485 PF00293 NUDIX domain BED32_15495 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BED32_15500 PF01568 Molydopterin dinucleotide binding domain BED32_15500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED32_15500 PF00384 Molybdopterin oxidoreductase BED32_15500 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED32_15505 PF03927 NapD protein BED32_15515 PF00196 Bacterial regulatory proteins, luxR family BED32_15515 PF00072 Response regulator receiver domain BED32_15525 PF00873 AcrB/AcrD/AcrF family BED32_15545 PF03960 ArsC family BED32_15550 PF07687 Peptidase dimerisation domain BED32_15550 PF01546 Peptidase family M20/M25/M40 BED32_15555 PF02557 D-alanyl-D-alanine carboxypeptidase BED32_15560 PF13980 Uncharacterised protein family (UPF0370) BED32_15575 PF13505 Outer membrane protein beta-barrel domain BED32_15590 PF01548 Transposase BED32_15590 PF02371 Transposase IS116/IS110/IS902 family BED32_15595 PF03245 Bacteriophage Rz lysis protein BED32_15600 PF02230 Phospholipase/Carboxylesterase BED32_15615 PF13718 GNAT acetyltransferase 2 BED32_15615 PF17176 tRNA-binding domain BED32_15615 PF05127 Helicase BED32_15620 PF04284 Protein of unknown function (DUF441) BED32_15625 PF04228 Putative neutral zinc metallopeptidase BED32_15630 PF01259 SAICAR synthetase BED32_15635 PF06804 NlpB/DapX lipoprotein BED32_15640 PF00701 Dihydrodipicolinate synthetase family BED32_15645 PF01842 ACT domain BED32_15650 PF00578 AhpC/TSA family BED32_15655 PF01594 AI-2E family transporter BED32_15660 PF01435 Peptidase family M48 BED32_15660 PF07720 Tetratricopeptide repeat BED32_15665 PF03960 ArsC family BED32_15670 PF00308 Bacterial dnaA protein BED32_15675 PF00860 Permease family BED32_15690 PF00551 Formyl transferase BED32_15695 PF13302 Acetyltransferase (GNAT) domain BED32_15705 PF00005 ABC transporter BED32_15710 PF00528 Binding-protein-dependent transport system inner membrane component BED32_15715 PF00528 Binding-protein-dependent transport system inner membrane component BED32_15720 PF17941 Polyphosphate kinase C-terminal domain 1 BED32_15720 PF02503 Polyphosphate kinase middle domain BED32_15720 PF13090 Polyphosphate kinase C-terminal domain 2 BED32_15720 PF13089 Polyphosphate kinase N-terminal domain BED32_15725 PF02541 Ppx/GppA phosphatase family BED32_15740 PF00563 EAL domain BED32_15740 PF00990 Diguanylate cyclase, GGDEF domain BED32_15740 PF05231 MASE1 BED32_15740 PF08447 PAS fold BED32_15740 PF13426 PAS domain BED32_15740 PF08448 PAS fold BED32_15745 PF00012 Hsp70 protein BED32_15750 PF13533 Biotin-lipoyl like BED32_15755 PF00873 AcrB/AcrD/AcrF family BED32_15760 PF00873 AcrB/AcrD/AcrF family BED32_15765 PF07690 Major Facilitator Superfamily BED32_15770 PF00672 HAMP domain BED32_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_15770 PF00512 His Kinase A (phospho-acceptor) domain BED32_15775 PF00072 Response regulator receiver domain BED32_15775 PF00486 Transcriptional regulatory protein, C terminal BED32_15780 PF07411 Domain of unknown function (DUF1508) BED32_15795 PF03608 PTS system enzyme II sorbitol-specific factor BED32_15800 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BED32_15800 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BED32_15805 PF03829 PTS system glucitol/sorbitol-specific IIA component BED32_15810 PF00106 short chain dehydrogenase BED32_15815 PF06923 Glucitol operon activator protein (GutM) BED32_15820 PF08220 DeoR-like helix-turn-helix domain BED32_15820 PF00455 DeoR C terminal sensor domain BED32_15825 PF01380 SIS domain BED32_15825 PF00571 CBS domain BED32_15840 PF08543 Phosphomethylpyrimidine kinase BED32_15865 PF00872 Transposase, Mutator family BED32_15905 PF01548 Transposase BED32_15905 PF02371 Transposase IS116/IS110/IS902 family BED32_15910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED32_15910 PF00034 Cytochrome c BED32_15930 PF02540 NAD synthase BED32_15930 PF00958 GMP synthase C terminal domain BED32_15930 PF00117 Glutamine amidotransferase class-I BED32_15935 PF00478 IMP dehydrogenase / GMP reductase domain BED32_15935 PF00571 CBS domain BED32_15940 PF02601 Exonuclease VII, large subunit BED32_15940 PF13742 OB-fold nucleic acid binding domain BED32_15945 PF07191 zinc-ribbons BED32_15955 PF02371 Transposase IS116/IS110/IS902 family BED32_15955 PF01548 Transposase BED32_15960 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BED32_15960 PF01926 50S ribosome-binding GTPase BED32_15970 PF13360 PQQ-like domain BED32_15980 PF03129 Anticodon binding domain BED32_15980 PF13393 Histidyl-tRNA synthetase BED32_15985 PF04551 GcpE protein BED32_15990 PF13464 Domain of unknown function (DUF4115) BED32_16000 PF04055 Radical SAM superfamily BED32_16005 PF00334 Nucleoside diphosphate kinase BED32_16015 PF00905 Penicillin binding protein transpeptidase domain BED32_16015 PF06832 Penicillin-Binding Protein C-terminus Family BED32_16015 PF00912 Transglycosylase BED32_16020 PF17962 Bacterial macroglobulin domain 6 BED32_16020 PF07678 A-macroglobulin TED domain BED32_16020 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BED32_16020 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BED32_16020 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BED32_16020 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BED32_16020 PF07703 Alpha-2-macroglobulin bait region domain BED32_16020 PF00207 Alpha-2-macroglobulin family BED32_16020 PF01835 MG2 domain BED32_16025 PF03212 Pertactin BED32_16025 PF03797 Autotransporter beta-domain BED32_16025 PF16168 Adhesin of bacterial autotransporter system, probable stalk BED32_16030 PF14581 SseB protein C-terminal domain BED32_16030 PF07179 SseB protein N-terminal domain BED32_16035 PF00883 Cytosol aminopeptidase family, catalytic domain BED32_16035 PF12404 Peptidase BED32_16040 PF04384 Iron-sulphur cluster assembly BED32_16045 PF00111 2Fe-2S iron-sulfur cluster binding domain BED32_16050 PF00012 Hsp70 protein BED32_16055 PF00226 DnaJ domain BED32_16055 PF07743 HSCB C-terminal oligomerisation domain BED32_16060 PF01521 Iron-sulphur cluster biosynthesis BED32_16065 PF01592 NifU-like N terminal domain BED32_16070 PF00266 Aminotransferase class-V BED32_16075 PF02082 Transcriptional regulator BED32_16080 PF00588 SpoU rRNA Methylase family BED32_16085 PF00459 Inositol monophosphatase family BED32_16090 PF03824 High-affinity nickel-transport protein BED32_16095 PF06226 Protein of unknown function (DUF1007) BED32_16105 PF12832 MFS_1 like family BED32_16110 PF00464 Serine hydroxymethyltransferase BED32_16115 PF00970 Oxidoreductase FAD-binding domain BED32_16115 PF00175 Oxidoreductase NAD-binding domain BED32_16115 PF00042 Globin BED32_16120 PF14502 Helix-turn-helix domain BED32_16120 PF14503 YhfZ C-terminal domain BED32_16130 PF01168 Alanine racemase, N-terminal domain BED32_16135 PF02126 Phosphotriesterase family BED32_16140 PF10941 Protein of unknown function DUF2620 BED32_16145 PF10797 Protein of unknown function BED32_16150 PF00543 Nitrogen regulatory protein P-II BED32_16155 PF00795 Carbon-nitrogen hydrolase BED32_16155 PF02540 NAD synthase BED32_16160 PF00072 Response regulator receiver domain BED32_16160 PF00158 Sigma-54 interaction domain BED32_16165 PF13942 YfhG lipoprotein BED32_16170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_16170 PF00512 His Kinase A (phospho-acceptor) domain BED32_16180 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BED32_16180 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BED32_16180 PF02769 AIR synthase related protein, C-terminal domain BED32_16185 PF01464 Transglycosylase SLT domain BED32_16185 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_16190 PF14437 MafB19-like deaminase BED32_16205 PF01380 SIS domain BED32_16210 PF01418 Helix-turn-helix domain, rpiR family BED32_16210 PF01380 SIS domain BED32_16215 PF12838 4Fe-4S dicluster domain BED32_16225 PF01648 4'-phosphopantetheinyl transferase superfamily BED32_16230 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BED32_16235 PF11967 Recombination protein O N terminal BED32_16235 PF02565 Recombination protein O C terminal BED32_16240 PF01926 50S ribosome-binding GTPase BED32_16240 PF07650 KH domain BED32_16245 PF14622 Ribonuclease-III-like BED32_16245 PF00035 Double-stranded RNA binding motif BED32_16250 PF10502 Signal peptidase, peptidase S26 BED32_16255 PF03144 Elongation factor Tu domain 2 BED32_16255 PF00009 Elongation factor Tu GTP binding domain BED32_16255 PF00679 Elongation factor G C-terminus BED32_16255 PF06421 GTP-binding protein LepA C-terminus BED32_16270 PF03888 MucB/RseB N-terminal domain BED32_16270 PF17188 MucB/RseB C-terminal domain BED32_16275 PF03872 Anti sigma-E protein RseA, N-terminal domain BED32_16275 PF03873 Anti sigma-E protein RseA, C-terminal domain BED32_16280 PF08281 Sigma-70, region 4 BED32_16280 PF04542 Sigma-70 region 2 BED32_16285 PF00890 FAD binding domain BED32_16285 PF02910 Fumarate reductase flavoprotein C-term BED32_16290 PF05175 Methyltransferase small domain BED32_16295 PF00270 DEAD/DEAH box helicase BED32_16295 PF00271 Helicase conserved C-terminal domain BED32_16300 PF02371 Transposase IS116/IS110/IS902 family BED32_16300 PF01548 Transposase BED32_16305 PF01548 Transposase BED32_16305 PF02371 Transposase IS116/IS110/IS902 family BED32_16310 PF12796 Ankyrin repeats (3 copies) BED32_16325 PF01228 Glycine radical BED32_16330 PF03167 Uracil DNA glycosylase superfamily BED32_16335 PF01025 GrpE BED32_16340 PF01513 ATP-NAD kinase BED32_16345 PF02463 RecF/RecN/SMC N terminal domain BED32_16350 PF04355 SmpA / OmlA family BED32_16355 PF03658 RnfH family Ubiquitin BED32_16360 PF03364 Polyketide cyclase / dehydrase and lipid transport BED32_16365 PF01668 SmpB protein BED32_16380 PF01740 STAS domain BED32_16380 PF00916 Sulfate permease family BED32_16385 PF04794 YdjC-like protein BED32_16390 PF07883 Cupin domain BED32_16390 PF12833 Helix-turn-helix domain BED32_16395 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED32_16400 PF00232 Glycosyl hydrolase family 1 BED32_16405 PF02378 Phosphotransferase system, EIIC BED32_16410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED32_16420 PF01548 Transposase BED32_16420 PF02371 Transposase IS116/IS110/IS902 family BED32_16425 PF00248 Aldo/keto reductase family BED32_16430 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED32_16435 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED32_16440 PF07885 Ion channel BED32_16440 PF02254 TrkA-N domain BED32_16445 PF06411 HdeA/HdeB family BED32_16450 PF03824 High-affinity nickel-transport protein BED32_16455 PF03253 Urea transporter BED32_16460 PF01774 UreD urease accessory protein BED32_16465 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED32_16470 PF01730 UreF BED32_16475 PF02814 UreE urease accessory protein, N-terminal domain BED32_16475 PF05194 UreE urease accessory protein, C-terminal domain BED32_16480 PF01979 Amidohydrolase family BED32_16480 PF00449 Urease alpha-subunit, N-terminal domain BED32_16485 PF00699 Urease beta subunit BED32_16490 PF00547 Urease, gamma subunit BED32_16495 PF00005 ABC transporter BED32_16500 PF00005 ABC transporter BED32_16505 PF12911 N-terminal TM domain of oligopeptide transport permease C BED32_16505 PF00528 Binding-protein-dependent transport system inner membrane component BED32_16510 PF00528 Binding-protein-dependent transport system inner membrane component BED32_16515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_16545 PF00313 'Cold-shock' DNA-binding domain BED32_16560 PF09400 Protein of unknown function (DUF2002) BED32_16565 PF07690 Major Facilitator Superfamily BED32_16570 PF12833 Helix-turn-helix domain BED32_16580 PF06392 Acid shock protein repeat BED32_16585 PF05957 Bacterial protein of unknown function (DUF883) BED32_16590 PF00155 Aminotransferase class I and II BED32_16590 PF00392 Bacterial regulatory proteins, gntR family BED32_16595 PF02627 Carboxymuconolactone decarboxylase family BED32_16605 PF07972 NrdI Flavodoxin like BED32_16610 PF00317 Ribonucleotide reductase, all-alpha domain BED32_16610 PF02867 Ribonucleotide reductase, barrel domain BED32_16610 PF08343 Ribonucleotide reductase N-terminal BED32_16615 PF00268 Ribonucleotide reductase, small chain BED32_16620 PF00571 CBS domain BED32_16620 PF00005 ABC transporter BED32_16625 PF00528 Binding-protein-dependent transport system inner membrane component BED32_16630 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED32_16640 PF00929 Exonuclease BED32_16645 PF00075 RNase H BED32_16650 PF08241 Methyltransferase domain BED32_16655 PF16123 Hydroxyacylglutathione hydrolase C-terminus BED32_16655 PF00753 Metallo-beta-lactamase superfamily BED32_16660 PF01476 LysM domain BED32_16660 PF01464 Transglycosylase SLT domain BED32_16665 PF02371 Transposase IS116/IS110/IS902 family BED32_16665 PF01548 Transposase BED32_16670 PF03372 Endonuclease/Exonuclease/phosphatase family BED32_16675 PF07690 Major Facilitator Superfamily BED32_16680 PF03466 LysR substrate binding domain BED32_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_16685 PF00248 Aldo/keto reductase family BED32_16695 PF00872 Transposase, Mutator family BED32_16735 PF09383 NIL domain BED32_16735 PF00005 ABC transporter BED32_16740 PF00528 Binding-protein-dependent transport system inner membrane component BED32_16745 PF03180 NLPA lipoprotein BED32_16750 PF16358 RcsF lipoprotein BED32_16755 PF01980 tRNA-methyltransferase O BED32_16755 PF18389 TrmO C-terminal domain BED32_16760 PF03129 Anticodon binding domain BED32_16760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED32_16760 PF04073 Aminoacyl-tRNA editing domain BED32_16765 PF04170 NlpE N-terminal domain BED32_16765 PF17185 NlpE C-terminal OB domain BED32_16770 PF00472 RF-1 domain BED32_16775 PF07152 YaeQ protein BED32_16785 PF07073 Modulator of Rho-dependent transcription termination (ROF) BED32_16790 PF00034 Cytochrome c BED32_16795 PF01171 PP-loop family BED32_16795 PF11734 TilS substrate C-terminal domain BED32_16795 PF09179 TilS substrate binding domain BED32_16800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED32_16810 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BED32_16815 PF02811 PHP domain BED32_16815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BED32_16815 PF14579 Helix-hairpin-helix motif BED32_16815 PF07733 Bacterial DNA polymerase III alpha NTPase domain BED32_16815 PF01336 OB-fold nucleic acid binding domain BED32_16820 PF01351 Ribonuclease HII BED32_16825 PF02684 Lipid-A-disaccharide synthetase BED32_16835 PF07977 FabA-like domain BED32_16840 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_16840 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BED32_16845 PF03938 Outer membrane protein (OmpH-like) BED32_16850 PF07244 Surface antigen variable number repeat BED32_16850 PF01103 Surface antigen BED32_16855 PF17820 PDZ domain BED32_16855 PF02163 Peptidase family M50 BED32_16865 PF01255 Putative undecaprenyl diphosphate synthase BED32_16870 PF13288 DXP reductoisomerase C-terminal domain BED32_16870 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BED32_16870 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BED32_16875 PF01765 Ribosome recycling factor BED32_16880 PF00696 Amino acid kinase family BED32_16885 PF00889 Elongation factor TS BED32_16890 PF00318 Ribosomal protein S2 BED32_16900 PF01909 Nucleotidyltransferase domain BED32_16900 PF01966 HD domain BED32_16900 PF08335 GlnD PII-uridylyltransferase BED32_16900 PF01842 ACT domain BED32_16905 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BED32_16905 PF14602 Hexapeptide repeat of succinyl-transferase BED32_16905 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_16910 PF11944 Protein of unknown function (DUF3461) BED32_16915 PF00258 Flavodoxin BED32_16920 PF00849 RNA pseudouridylate synthase BED32_16925 PF04287 tRNA pseudouridine synthase C BED32_16930 PF07348 Syd protein (SUKH-2) BED32_16935 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BED32_16935 PF14489 QueF-like protein BED32_16940 PF03641 Possible lysine decarboxylase BED32_16940 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BED32_16940 PF11892 Domain of unknown function (DUF3412) BED32_16945 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED32_16945 PF01367 5'-3' exonuclease, C-terminal SAM fold BED32_16950 PF01548 Transposase BED32_16950 PF02371 Transposase IS116/IS110/IS902 family BED32_16955 PF18125 RlmM ferredoxin-like domain BED32_16955 PF01728 FtsJ-like methyltransferase BED32_16960 PF04241 Protein of unknown function (DUF423) BED32_16965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_16965 PF03466 LysR substrate binding domain BED32_16970 PF06004 Bacterial protein of unknown function (DUF903) BED32_16975 PF00266 Aminotransferase class-V BED32_16980 PF02657 Fe-S metabolism associated domain BED32_16985 PF00899 ThiF family BED32_16990 PF03562 MltA specific insert domain BED32_16990 PF06725 3D domain BED32_17010 PF01520 N-acetylmuramoyl-L-alanine amidase BED32_17010 PF11741 AMIN domain BED32_17015 PF00583 Acetyltransferase (GNAT) family BED32_17015 PF00696 Amino acid kinase family BED32_17020 PF13538 UvrD-like helicase C-terminal domain BED32_17025 PF12705 PD-(D/E)XK nuclease superfamily BED32_17025 PF00580 UvrD/REP helicase N-terminal domain BED32_17025 PF13361 UvrD-like helicase C-terminal domain BED32_17030 PF00675 Insulinase (Peptidase family M16) BED32_17030 PF05193 Peptidase M16 inactive domain BED32_17030 PF16187 Middle or third domain of peptidase_M16 BED32_17035 PF17946 RecC C-terminal domain BED32_17040 PF12528 Type II secretion prepilin peptidase dependent protein C BED32_17040 PF07963 Prokaryotic N-terminal methylation motif BED32_17060 PF00303 Thymidylate synthase BED32_17065 PF01790 Prolipoprotein diacylglyceryl transferase BED32_17070 PF02896 PEP-utilising enzyme, TIM barrel domain BED32_17070 PF00391 PEP-utilising enzyme, mobile domain BED32_17070 PF05524 PEP-utilising enzyme, N-terminal BED32_17070 PF01590 GAF domain BED32_17085 PF02976 DNA mismatch repair enzyme MutH BED32_17090 PF03741 Integral membrane protein TerC family BED32_17095 PF00248 Aldo/keto reductase family BED32_17105 PF00501 AMP-binding enzyme BED32_17105 PF01553 Acyltransferase BED32_17105 PF13193 AMP-binding enzyme C-terminal domain BED32_17110 PF00384 Molybdopterin oxidoreductase BED32_17110 PF01568 Molydopterin dinucleotide binding domain BED32_17115 PF00356 Bacterial regulatory proteins, lacI family BED32_17120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED32_17120 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BED32_17125 PF03466 LysR substrate binding domain BED32_17125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_17130 PF07690 Major Facilitator Superfamily BED32_17200 PF07963 Prokaryotic N-terminal methylation motif BED32_17200 PF08334 Type II secretion system (T2SS), protein G BED32_17215 PF00263 Bacterial type II and III secretion system protein BED32_17215 PF03958 Bacterial type II/III secretion system short domain BED32_17230 PF00484 Carbonic anhydrase BED32_17235 PF01638 HxlR-like helix-turn-helix BED32_17250 PF01556 DnaJ C terminal domain BED32_17250 PF00226 DnaJ domain BED32_17255 PF02371 Transposase IS116/IS110/IS902 family BED32_17255 PF01548 Transposase BED32_17260 PF00990 Diguanylate cyclase, GGDEF domain BED32_17260 PF08448 PAS fold BED32_17265 PF13474 SnoaL-like domain BED32_17280 PF00872 Transposase, Mutator family BED32_17285 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BED32_17290 PF15723 Motility quorum-sensing regulator, toxin of MqsA BED32_17305 PF13592 Winged helix-turn helix BED32_17305 PF13358 DDE superfamily endonuclease BED32_17310 PF00589 Phage integrase family BED32_17350 PF13358 DDE superfamily endonuclease BED32_17350 PF13592 Winged helix-turn helix BED32_17385 PF00589 Phage integrase family BED32_17395 PF00152 tRNA synthetases class II (D, K and N) BED32_17395 PF01336 OB-fold nucleic acid binding domain BED32_17400 PF00472 RF-1 domain BED32_17400 PF03462 PCRF domain BED32_17405 PF01368 DHH family BED32_17405 PF02272 DHHA1 domain BED32_17405 PF17768 RecJ OB domain BED32_17410 PF10411 Disulfide bond isomerase protein N-terminus BED32_17410 PF13098 Thioredoxin-like domain BED32_17415 PF00589 Phage integrase family BED32_17415 PF02899 Phage integrase, N-terminal SAM-like domain BED32_17420 PF00258 Flavodoxin BED32_17425 PF06123 Inner membrane protein CreD BED32_17430 PF00672 HAMP domain BED32_17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_17430 PF00512 His Kinase A (phospho-acceptor) domain BED32_17435 PF00486 Transcriptional regulatory protein, C terminal BED32_17435 PF00072 Response regulator receiver domain BED32_17440 PF07254 Membrane-bound toxin component of toxin-antitoxin system BED32_17445 PF03937 Flavinator of succinate dehydrogenase BED32_17450 PF01571 Aminomethyltransferase folate-binding domain BED32_17455 PF01548 Transposase BED32_17455 PF02371 Transposase IS116/IS110/IS902 family BED32_17460 PF03006 Haemolysin-III related BED32_17480 PF02347 Glycine cleavage system P-protein BED32_17485 PF01597 Glycine cleavage H-protein BED32_17490 PF08669 Glycine cleavage T-protein C-terminal barrel domain BED32_17490 PF01571 Aminomethyltransferase folate-binding domain BED32_17495 PF01494 FAD binding domain BED32_17500 PF01494 FAD binding domain BED32_17505 PF00557 Metallopeptidase family M24 BED32_17505 PF05195 Aminopeptidase P, N-terminal domain BED32_17510 PF03695 Uncharacterised protein family (UPF0149) BED32_17515 PF05164 Cell division protein ZapA BED32_17525 PF01812 5-formyltetrahydrofolate cyclo-ligase family BED32_17530 PF00113 Enolase, C-terminal TIM barrel domain BED32_17530 PF03952 Enolase, N-terminal domain BED32_17535 PF06418 CTP synthase N-terminus BED32_17535 PF00117 Glutamine amidotransferase class-I BED32_17540 PF03819 MazG nucleotide pyrophosphohydrolase domain BED32_17545 PF13291 ACT domain BED32_17545 PF04607 Region found in RelA / SpoT proteins BED32_17545 PF02824 TGS domain BED32_17550 PF01938 TRAM domain BED32_17550 PF05958 tRNA (Uracil-5-)-methyltransferase BED32_17555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BED32_17555 PF01627 Hpt domain BED32_17555 PF00072 Response regulator receiver domain BED32_17555 PF00512 His Kinase A (phospho-acceptor) domain BED32_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_17555 PF00672 HAMP domain BED32_17560 PF00595 PDZ domain BED32_17565 PF01966 HD domain BED32_17565 PF13286 Phosphohydrolase-associated domain BED32_17570 PF01048 Phosphorylase superfamily BED32_17575 PF01497 Periplasmic binding protein BED32_17580 PF03458 UPF0126 domain BED32_17585 PF01521 Iron-sulphur cluster biosynthesis BED32_17590 PF00654 Voltage gated chloride channel BED32_17595 PF00202 Aminotransferase class-III BED32_17600 PF07690 Major Facilitator Superfamily BED32_17605 PF01032 FecCD transport family BED32_17610 PF01497 Periplasmic binding protein BED32_17615 PF00005 ABC transporter BED32_17620 PF00905 Penicillin binding protein transpeptidase domain BED32_17620 PF00912 Transglycosylase BED32_17620 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal BED32_17620 PF14814 Bifunctional transglycosylase second domain BED32_17625 PF00270 DEAD/DEAH box helicase BED32_17625 PF04408 Helicase associated domain (HA2) BED32_17625 PF00271 Helicase conserved C-terminal domain BED32_17625 PF08482 ATP-dependent helicase C-terminal BED32_17630 PF02834 LigT like Phosphoesterase BED32_17635 PF17746 SfsA N-terminal OB domain BED32_17635 PF03749 Sugar fermentation stimulation protein RE domain BED32_17640 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED32_17645 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED32_17650 PF12627 Probable RNA and SrmB- binding site of polymerase A BED32_17650 PF12626 Polymerase A arginine-rich C-terminus BED32_17650 PF01743 Poly A polymerase head domain BED32_17655 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BED32_17660 PF02548 Ketopantoate hydroxymethyltransferase BED32_17665 PF02569 Pantoate-beta-alanine ligase BED32_17670 PF02261 Aspartate decarboxylase BED32_17675 PF01522 Polysaccharide deacetylase BED32_17680 PF01061 ABC-2 type transporter BED32_17685 PF00005 ABC transporter BED32_17690 PF00484 Carbonic anhydrase BED32_17695 PF00156 Phosphoribosyl transferase domain BED32_17700 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED32_17700 PF07731 Multicopper oxidase BED32_17700 PF00394 Multicopper oxidase BED32_17700 PF07732 Multicopper oxidase BED32_17705 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) BED32_17710 PF17284 Spermidine synthase tetramerisation domain BED32_17715 PF02675 S-adenosylmethionine decarboxylase BED32_17720 PF18624 CDI immunity protein BED32_17725 PF00892 EamA-like transporter family BED32_17730 PF06062 Uncharacterised protein family (UPF0231) BED32_17740 PF00593 TonB dependent receptor BED32_17740 PF07715 TonB-dependent Receptor Plug Domain BED32_17745 PF12833 Helix-turn-helix domain BED32_17745 PF01965 DJ-1/PfpI family BED32_17755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED32_17755 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED32_17760 PF00364 Biotin-requiring enzyme BED32_17760 PF02817 e3 binding domain BED32_17760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED32_17765 PF17831 Pyruvate dehydrogenase E1 component middle domain BED32_17765 PF00456 Transketolase, thiamine diphosphate binding domain BED32_17770 PF00392 Bacterial regulatory proteins, gntR family BED32_17770 PF07729 FCD domain BED32_17775 PF00324 Amino acid permease BED32_17780 PF17113 Regulatory signalling modulator protein AmpE BED32_17785 PF01510 N-acetylmuramoyl-L-alanine amidase BED32_17790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BED32_17790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BED32_17795 PF07963 Prokaryotic N-terminal methylation motif BED32_17800 PF00437 Type II/IV secretion system protein BED32_17800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BED32_17805 PF00482 Type II secretion system (T2SS), protein F BED32_17810 PF00478 IMP dehydrogenase / GMP reductase domain BED32_17815 PF01121 Dephospho-CoA kinase BED32_17820 PF07072 Cell division protein BED32_17825 PF03884 DNA gyrase inhibitor YacG BED32_17830 PF00293 NUDIX domain BED32_17835 PF07516 SecA Wing and Scaffold domain BED32_17835 PF01043 SecA preprotein cross-linking domain BED32_17835 PF02810 SEC-C motif BED32_17835 PF07517 SecA DEAD-like domain BED32_17840 PF06558 Secretion monitor precursor protein (SecM) BED32_17850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BED32_17855 PF12327 FtsZ family, C-terminal domain BED32_17855 PF00091 Tubulin/FtsZ family, GTPase domain BED32_17860 PF02491 SHS2 domain inserted in FTSA BED32_17865 PF08478 POTRA domain, FtsQ-type BED32_17865 PF03799 Cell division protein FtsQ BED32_17870 PF01820 D-ala D-ala ligase N-terminus BED32_17870 PF07478 D-ala D-ala ligase C-terminus BED32_17875 PF01225 Mur ligase family, catalytic domain BED32_17875 PF02875 Mur ligase family, glutamate ligase domain BED32_17875 PF08245 Mur ligase middle domain BED32_17880 PF04101 Glycosyltransferase family 28 C-terminal domain BED32_17880 PF03033 Glycosyltransferase family 28 N-terminal domain BED32_17885 PF01098 Cell cycle protein BED32_17890 PF08245 Mur ligase middle domain BED32_17890 PF02875 Mur ligase family, glutamate ligase domain BED32_17895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BED32_17895 PF00953 Glycosyl transferase family 4 BED32_17900 PF08245 Mur ligase middle domain BED32_17900 PF02875 Mur ligase family, glutamate ligase domain BED32_17900 PF01225 Mur ligase family, catalytic domain BED32_17905 PF02875 Mur ligase family, glutamate ligase domain BED32_17905 PF01225 Mur ligase family, catalytic domain BED32_17905 PF08245 Mur ligase middle domain BED32_17910 PF03717 Penicillin-binding Protein dimerisation domain BED32_17910 PF00905 Penicillin binding protein transpeptidase domain BED32_17920 PF01795 MraW methylase family BED32_17925 PF02381 MraZ protein, putative antitoxin-like BED32_17930 PF06610 L-alanine exporter BED32_17935 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED32_17935 PF00356 Bacterial regulatory proteins, lacI family BED32_17940 PF10369 Small subunit of acetolactate synthase BED32_17945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED32_17945 PF00205 Thiamine pyrophosphate enzyme, central domain BED32_17945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED32_17950 PF00501 AMP-binding enzyme BED32_17955 PF03466 LysR substrate binding domain BED32_17955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_17960 PF08502 LeuA allosteric (dimerisation) domain BED32_17960 PF00682 HMGL-like BED32_17965 PF00180 Isocitrate/isopropylmalate dehydrogenase BED32_17970 PF00330 Aconitase family (aconitate hydratase) BED32_17975 PF00694 Aconitase C-terminal domain BED32_17990 PF07690 Major Facilitator Superfamily BED32_18005 PF12793 Sugar transport-related sRNA regulator N-term BED32_18005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED32_18025 PF00528 Binding-protein-dependent transport system inner membrane component BED32_18030 PF00005 ABC transporter BED32_18035 PF09335 SNARE associated Golgi protein BED32_18040 PF00136 DNA polymerase family B BED32_18040 PF03104 DNA polymerase family B, exonuclease domain BED32_18045 PF18337 RapA N-terminal Tudor like domain BED32_18045 PF18339 RapA N-terminal Tudor like domain 1 BED32_18045 PF00176 SNF2 family N-terminal domain BED32_18045 PF12137 RNA polymerase recycling family C-terminal BED32_18045 PF00271 Helicase conserved C-terminal domain BED32_18050 PF07979 Intimin C-type lectin domain BED32_18050 PF11924 Inverse autotransporter, beta-domain BED32_18050 PF02369 Bacterial Ig-like domain (group 1) BED32_18050 PF09134 Invasin, domain 3 BED32_18055 PF00849 RNA pseudouridylate synthase BED32_18060 PF00226 DnaJ domain BED32_18060 PF05099 Tellurite resistance protein TerB BED32_18065 PF03968 OstA-like protein BED32_18065 PF04453 LPS transport system D BED32_18070 PF09312 SurA N-terminal domain BED32_18070 PF00639 PPIC-type PPIASE domain BED32_18075 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BED32_18080 PF00398 Ribosomal RNA adenine dimethylase BED32_18085 PF04379 ApaG domain BED32_18090 PF00149 Calcineurin-like phosphoesterase BED32_18095 PF00186 Dihydrofolate reductase BED32_18100 PF12821 Threonine/Serine exporter, ThrE BED32_18105 PF06738 Putative threonine/serine exporter BED32_18110 PF01810 LysE type translocator BED32_18115 PF02142 MGS-like domain BED32_18115 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED32_18115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED32_18120 PF00117 Glutamine amidotransferase class-I BED32_18120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BED32_18125 PF01113 Dihydrodipicolinate reductase, N-terminus BED32_18125 PF05173 Dihydrodipicolinate reductase, C-terminus BED32_18130 PF02401 LytB protein BED32_18135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED32_18140 PF01252 Signal peptidase (SPase) II BED32_18145 PF00133 tRNA synthetases class I (I, L, M and V) BED32_18145 PF08264 Anticodon-binding domain of tRNA BED32_18145 PF06827 Zinc finger found in FPG and IleRS BED32_18150 PF06574 FAD synthetase BED32_18150 PF01687 Riboflavin kinase BED32_18160 PF01649 Ribosomal protein S20 BED32_18165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_18165 PF03466 LysR substrate binding domain BED32_18170 PF06965 Na+/H+ antiporter 1 BED32_18175 PF01556 DnaJ C terminal domain BED32_18175 PF00226 DnaJ domain BED32_18175 PF00684 DnaJ central domain BED32_18180 PF00012 Hsp70 protein BED32_18185 PF01184 GPR1/FUN34/yaaH family BED32_18195 PF07690 Major Facilitator Superfamily BED32_18200 PF00994 Probable molybdopterin binding domain BED32_18205 PF00923 Transaldolase/Fructose-6-phosphate aldolase BED32_18210 PF03883 Peroxide stress protein YaaA BED32_18215 PF02371 Transposase IS116/IS110/IS902 family BED32_18215 PF01548 Transposase BED32_18220 PF00291 Pyridoxal-phosphate dependent enzyme BED32_18220 PF14821 Threonine synthase N terminus BED32_18225 PF00288 GHMP kinases N terminal domain BED32_18225 PF08544 GHMP kinases C terminal BED32_18230 PF00742 Homoserine dehydrogenase BED32_18230 PF03447 Homoserine dehydrogenase, NAD binding domain BED32_18230 PF13840 ACT domain BED32_18230 PF01842 ACT domain BED32_18230 PF00696 Amino acid kinase family BED32_18240 PF00486 Transcriptional regulatory protein, C terminal BED32_18240 PF00072 Response regulator receiver domain BED32_18245 PF05981 CreA protein BED32_18250 PF06445 GyrI-like small molecule binding domain BED32_18250 PF12833 Helix-turn-helix domain BED32_18255 PF00300 Histidine phosphatase superfamily (branch 1) BED32_18265 PF01371 Trp repressor protein BED32_18270 PF14718 Soluble lytic murein transglycosylase L domain BED32_18270 PF01464 Transglycosylase SLT domain BED32_18275 PF00689 Cation transporting ATPase, C-terminus BED32_18275 PF00690 Cation transporter/ATPase, N-terminus BED32_18285 PF00990 Diguanylate cyclase, GGDEF domain BED32_18285 PF17152 Periplasmic sensor domain BED32_18290 PF00691 OmpA family BED32_18295 PF00005 ABC transporter BED32_18295 PF12848 ABC transporter BED32_18305 PF03466 LysR substrate binding domain BED32_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_18310 PF00107 Zinc-binding dehydrogenase BED32_18310 PF08240 Alcohol dehydrogenase GroES-like domain BED32_18325 PF18429 Domain of unknown function (DUF5609) BED32_18330 PF10144 Bacterial virulence factor haemolysin BED32_18335 PF01048 Phosphorylase superfamily BED32_18340 PF01676 Metalloenzyme superfamily BED32_18345 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BED32_18345 PF00591 Glycosyl transferase family, a/b domain BED32_18345 PF02885 Glycosyl transferase family, helical bundle domain BED32_18350 PF01791 DeoC/LacD family aldolase BED32_18355 PF07662 Na+ dependent nucleoside transporter C-terminus BED32_18355 PF07670 Nucleoside recognition BED32_18355 PF01773 Na+ dependent nucleoside transporter N-terminus BED32_18360 PF01026 TatD related DNase BED32_18365 PF01734 Patatin-like phospholipase BED32_18370 PF07043 Protein of unknown function (DUF1328) BED32_18375 PF04972 BON domain BED32_18380 PF16658 Class II release factor RF3, C-terminal domain BED32_18380 PF00009 Elongation factor Tu GTP binding domain BED32_18380 PF03144 Elongation factor Tu domain 2 BED32_18385 PF00583 Acetyltransferase (GNAT) family BED32_18390 PF03603 DNA polymerase III psi subunit BED32_18395 PF05175 Methyltransferase small domain BED32_18395 PF08468 Methyltransferase small domain N-terminal BED32_18400 PF00248 Aldo/keto reductase family BED32_18415 PF07256 Protein of unknown function (DUF1435) BED32_18420 PF00990 Diguanylate cyclase, GGDEF domain BED32_18425 PF07715 TonB-dependent Receptor Plug Domain BED32_18425 PF07660 Secretin and TonB N terminus short domain BED32_18425 PF00593 TonB dependent receptor BED32_18435 PF00294 pfkB family carbohydrate kinase BED32_18440 PF11471 Maltoporin periplasmic N-terminal extension BED32_18440 PF02264 LamB porin BED32_18445 PF02378 Phosphotransferase system, EIIC BED32_18445 PF00367 phosphotransferase system, EIIB BED32_18450 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED32_18450 PF08244 Glycosyl hydrolases family 32 C terminal BED32_18455 PF00356 Bacterial regulatory proteins, lacI family BED32_18455 PF13407 Periplasmic binding protein domain BED32_18460 PF00158 Sigma-54 interaction domain BED32_18460 PF00989 PAS fold BED32_18460 PF02954 Bacterial regulatory protein, Fis family BED32_18465 PF01095 Pectinesterase BED32_18490 PF13358 DDE superfamily endonuclease BED32_18490 PF13592 Winged helix-turn helix BED32_18495 PF02543 Carbamoyltransferase N-terminus BED32_18495 PF16861 Carbamoyltransferase C-terminus BED32_18510 PF02734 DAK2 domain BED32_18515 PF02733 Dak1 domain BED32_18520 PF00465 Iron-containing alcohol dehydrogenase BED32_18525 PF00873 AcrB/AcrD/AcrF family BED32_18530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED32_18550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED32_18555 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED32_18555 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED32_18560 PF04198 Putative sugar-binding domain BED32_18560 PF00325 Bacterial regulatory proteins, crp family BED32_18565 PF00005 ABC transporter BED32_18570 PF02653 Branched-chain amino acid transport system / permease component BED32_18575 PF02653 Branched-chain amino acid transport system / permease component BED32_18580 PF13407 Periplasmic binding protein domain BED32_18585 PF01791 DeoC/LacD family aldolase BED32_18590 PF03992 Antibiotic biosynthesis monooxygenase BED32_18600 PF10696 Protein of unknown function (DUF2501) BED32_18605 PF00872 Transposase, Mutator family BED32_18615 PF01527 Transposase BED32_18635 PF03739 Lipopolysaccharide export system permease LptF/LptG BED32_18640 PF03739 Lipopolysaccharide export system permease LptF/LptG BED32_18645 PF00883 Cytosol aminopeptidase family, catalytic domain BED32_18645 PF02789 Cytosol aminopeptidase family, N-terminal domain BED32_18650 PF04364 DNA polymerase III chi subunit, HolC BED32_18655 PF10458 Valyl tRNA synthetase tRNA binding arm BED32_18655 PF00133 tRNA synthetases class I (I, L, M and V) BED32_18655 PF08264 Anticodon-binding domain of tRNA BED32_18660 PF00583 Acetyltransferase (GNAT) family BED32_18665 PF06877 Regulator of ribonuclease activity B BED32_18670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED32_18670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED32_18675 PF04074 YhcH/YjgK/YiaL BED32_18685 PF00528 Binding-protein-dependent transport system inner membrane component BED32_18695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_18695 PF00005 ABC transporter BED32_18700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED32_18700 PF00005 ABC transporter BED32_18730 PF07702 UTRA domain BED32_18730 PF00392 Bacterial regulatory proteins, gntR family BED32_18735 PF06754 Phosphonate metabolism protein PhnG BED32_18740 PF05845 Bacterial phosphonate metabolism protein (PhnH) BED32_18745 PF05861 Bacterial phosphonate metabolism protein (PhnI) BED32_18750 PF06007 Phosphonate metabolism protein PhnJ BED32_18755 PF00005 ABC transporter BED32_18760 PF00005 ABC transporter BED32_18765 PF07969 Amidohydrolase family BED32_18775 PF12706 Beta-lactamase superfamily domain BED32_18780 PF13460 NAD(P)H-binding BED32_18785 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BED32_18805 PF03459 TOBE domain BED32_18805 PF17912 MalK OB fold domain BED32_18805 PF00005 ABC transporter BED32_18810 PF00528 Binding-protein-dependent transport system inner membrane component BED32_18820 PF13416 Bacterial extracellular solute-binding protein BED32_18830 PF05426 Alginate lyase BED32_18830 PF07940 Heparinase II/III-like protein BED32_18835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED32_18835 PF01276 Orn/Lys/Arg decarboxylase, major domain BED32_18835 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED32_18840 PF13520 Amino acid permease BED32_18850 PF13508 Acetyltransferase (GNAT) domain BED32_18870 PF03313 Serine dehydratase alpha chain BED32_18880 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED32_18880 PF02321 Outer membrane efflux protein BED32_18885 PF00296 Luciferase-like monooxygenase BED32_18895 PF00270 DEAD/DEAH box helicase BED32_18895 PF03880 DbpA RNA binding domain BED32_18895 PF12343 Cold shock protein DEAD box A BED32_18895 PF00271 Helicase conserved C-terminal domain BED32_18900 PF07719 Tetratricopeptide repeat BED32_18900 PF13181 Tetratricopeptide repeat BED32_18905 PF01138 3' exoribonuclease family, domain 1 BED32_18905 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BED32_18905 PF00013 KH domain BED32_18905 PF03725 3' exoribonuclease family, domain 2 BED32_18905 PF00575 S1 RNA binding domain BED32_18910 PF00312 Ribosomal protein S15 BED32_18915 PF16198 tRNA pseudouridylate synthase B C-terminal domain BED32_18915 PF01509 TruB family pseudouridylate synthase (N terminal domain) BED32_18915 PF09157 Pseudouridine synthase II TruB, C-terminal BED32_18920 PF02033 Ribosome-binding factor A BED32_18925 PF00009 Elongation factor Tu GTP binding domain BED32_18925 PF08364 Bacterial translation initiation factor IF-2 associated region BED32_18925 PF04760 Translation initiation factor IF-2, N-terminal region BED32_18925 PF11987 Translation-initiation factor 2 BED32_18925 PF03144 Elongation factor Tu domain 2 BED32_18930 PF08529 NusA N-terminal domain BED32_18930 PF13184 NusA-like KH domain BED32_18930 PF00575 S1 RNA binding domain BED32_18935 PF17384 RimP C-terminal SH3 domain BED32_18935 PF02576 RimP N-terminal domain BED32_18950 PF03840 Preprotein translocase SecG subunit BED32_18955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED32_18955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED32_18955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED32_18955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED32_18960 PF00809 Pterin binding enzyme BED32_18965 PF17862 AAA+ lid domain BED32_18965 PF00004 ATPase family associated with various cellular activities (AAA) BED32_18965 PF06480 FtsH Extracellular BED32_18965 PF01434 Peptidase family M41 BED32_18970 PF01728 FtsJ-like methyltransferase BED32_18975 PF01985 CRS1 / YhbY (CRM) domain BED32_18980 PF01272 Transcription elongation factor, GreA/GreB, C-term BED32_18980 PF03449 Transcription elongation factor, N-terminal BED32_18985 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BED32_18990 PF00072 Response regulator receiver domain BED32_18990 PF00486 Transcriptional regulatory protein, C terminal BED32_18995 PF00672 HAMP domain BED32_18995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_18995 PF00512 His Kinase A (phospho-acceptor) domain BED32_19000 PF01018 GTP1/OBG BED32_19000 PF01926 50S ribosome-binding GTPase BED32_19005 PF00892 EamA-like transporter family BED32_19010 PF01016 Ribosomal L27 protein BED32_19015 PF00829 Ribosomal prokaryotic L21 protein BED32_19020 PF00348 Polyprenyl synthetase BED32_19030 PF13693 Winged helix-turn-helix DNA-binding BED32_19035 PF00056 lactate/malate dehydrogenase, NAD binding domain BED32_19035 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BED32_19040 PF02863 Arginine repressor, C-terminal domain BED32_19040 PF01316 Arginine repressor, DNA binding domain BED32_19050 PF01225 Mur ligase family, catalytic domain BED32_19050 PF08245 Mur ligase middle domain BED32_19050 PF02875 Mur ligase family, glutamate ligase domain BED32_19055 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BED32_19060 PF02203 Tar ligand binding domain homologue BED32_19060 PF00672 HAMP domain BED32_19060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_19065 PF00719 Inorganic pyrophosphatase BED32_19070 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BED32_19075 PF04357 TamB, inner membrane protein subunit of TAM complex BED32_19080 PF17243 POTRA domain TamA domain 1 BED32_19080 PF01103 Surface antigen BED32_19080 PF07244 Surface antigen variable number repeat BED32_19085 PF01625 Peptide methionine sulfoxide reductase BED32_19090 PF01595 Cyclin M transmembrane N-terminal domain BED32_19090 PF03471 Transporter associated domain BED32_19090 PF00571 CBS domain BED32_19095 PF06526 Protein of unknown function (DUF1107) BED32_19100 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BED32_19105 PF00459 Inositol monophosphatase family BED32_19110 PF02872 5'-nucleotidase, C-terminal domain BED32_19110 PF00149 Calcineurin-like phosphoesterase BED32_19120 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED32_19120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED32_19125 PF08525 Opacity-associated protein A N-terminal motif BED32_19125 PF04225 Opacity-associated protein A LysM-like domain BED32_19135 PF01281 Ribosomal protein L9, N-terminal domain BED32_19135 PF03948 Ribosomal protein L9, C-terminal domain BED32_19140 PF01084 Ribosomal protein S18 BED32_19145 PF00436 Single-strand binding protein family BED32_19150 PF01250 Ribosomal protein S6 BED32_19160 PF00326 Prolyl oligopeptidase family BED32_19165 PF07338 Protein of unknown function (DUF1471) BED32_19170 PF02770 Acyl-CoA dehydrogenase, middle domain BED32_19170 PF18158 Adaptive response protein AidB N-terminal domain BED32_19170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED32_19175 PF01548 Transposase BED32_19175 PF02371 Transposase IS116/IS110/IS902 family BED32_19180 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED32_19180 PF00588 SpoU rRNA Methylase family BED32_19185 PF17876 Cold shock domain BED32_19185 PF08461 Ribonuclease R winged-helix domain BED32_19185 PF08206 Ribonuclease B OB domain BED32_19185 PF00773 RNB domain BED32_19185 PF00575 S1 RNA binding domain BED32_19190 PF02082 Transcriptional regulator BED32_19195 PF00709 Adenylosuccinate synthetase BED32_19200 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BED32_19205 PF01145 SPFH domain / Band 7 family BED32_19210 PF12221 Bacterial membrane protein N terminal BED32_19210 PF01145 SPFH domain / Band 7 family BED32_19215 PF16360 GTP-binding GTPase Middle Region BED32_19215 PF01926 50S ribosome-binding GTPase BED32_19215 PF13167 GTP-binding GTPase N-terminal BED32_19220 PF17209 Hfq protein BED32_19230 PF08676 MutL C terminal dimerisation domain BED32_19230 PF01119 DNA mismatch repair protein, C-terminal domain BED32_19235 PF01520 N-acetylmuramoyl-L-alanine amidase BED32_19240 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BED32_19245 PF01256 Carbohydrate kinase BED32_19245 PF03853 YjeF-related protein N-terminus BED32_19250 PF08331 Domain of unknown function (DUF1730) BED32_19265 PF00929 Exonuclease BED32_19270 PF03193 RsgA GTPase BED32_19275 PF02666 Phosphatidylserine decarboxylase BED32_19280 PF00924 Mechanosensitive ion channel BED32_19280 PF12794 Mechanosensitive ion channel inner membrane domain 1 BED32_19280 PF12795 Mechanosensitive ion channel porin domain BED32_19285 PF00152 tRNA synthetases class II (D, K and N) BED32_19290 PF02910 Fumarate reductase flavoprotein C-term BED32_19290 PF00890 FAD binding domain BED32_19295 PF13085 2Fe-2S iron-sulfur cluster binding domain BED32_19295 PF13183 4Fe-4S dicluster domain BED32_19300 PF02300 Fumarate reductase subunit C BED32_19305 PF02313 Fumarate reductase subunit D BED32_19310 PF08212 Lipocalin-like domain BED32_19315 PF00893 Small Multidrug Resistance protein BED32_19320 PF08085 Entericidin EcnA/B family BED32_19325 PF08207 Elongation factor P (EF-P) KOW-like domain BED32_19325 PF09285 Elongation factor P, C-terminal BED32_19325 PF01132 Elongation factor P (EF-P) OB domain BED32_19330 PF04055 Radical SAM superfamily BED32_19335 PF13698 Domain of unknown function (DUF4156) BED32_19345 PF00118 TCP-1/cpn60 chaperonin family BED32_19350 PF00166 Chaperonin 10 Kd subunit BED32_19355 PF04186 FxsA cytoplasmic membrane protein BED32_19360 PF10415 Fumarase C C-terminus BED32_19360 PF00206 Lyase BED32_19365 PF03605 Anaerobic c4-dicarboxylate membrane transporter BED32_19370 PF03091 CutA1 divalent ion tolerance protein BED32_19375 PF11412 Disulphide bond corrector protein DsbC BED32_19375 PF02683 Cytochrome C biogenesis protein transmembrane region BED32_19380 PF02595 Glycerate kinase family BED32_19395 PF01228 Glycine radical BED32_19395 PF02901 Pyruvate formate lyase-like BED32_19400 PF00871 Acetokinase family BED32_19405 PF01490 Transmembrane amino acid transporter protein BED32_19410 PF00291 Pyridoxal-phosphate dependent enzyme BED32_19415 PF04055 Radical SAM superfamily BED32_19420 PF06228 Haem utilisation ChuX/HutX BED32_19430 PF10636 Hemin uptake protein hemP BED32_19435 PF07715 TonB-dependent Receptor Plug Domain BED32_19435 PF00593 TonB dependent receptor BED32_19440 PF05171 Haemin-degrading HemS.ChuX domain BED32_19445 PF01497 Periplasmic binding protein BED32_19450 PF01032 FecCD transport family BED32_19455 PF00005 ABC transporter BED32_19470 PF07715 TonB-dependent Receptor Plug Domain BED32_19470 PF00593 TonB dependent receptor BED32_19485 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED32_19495 PF00005 ABC transporter BED32_19495 PF06472 ABC transporter transmembrane region 2 BED32_19500 PF07715 TonB-dependent Receptor Plug Domain BED32_19505 PF16220 Domain of unknown function (DUF4880) BED32_19505 PF04773 FecR protein BED32_19520 PF01206 Sulfurtransferase TusA BED32_19525 PF04143 Sulphur transport BED32_19530 PF01312 FlhB HrpN YscU SpaS Family BED32_19535 PF01311 Bacterial export proteins, family 1 BED32_19540 PF01313 Bacterial export proteins, family 3 BED32_19545 PF00813 FliP family BED32_19550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED32_19565 PF18269 T3SS EscN ATPase C-terminal domain BED32_19565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED32_19570 PF00771 FHIPEP family BED32_19580 PF07201 HrpJ-like domain BED32_19595 PF01514 Secretory protein of YscJ/FliF family BED32_19615 PF12833 Helix-turn-helix domain BED32_19615 PF14525 AraC-binding-like domain BED32_19640 PF04888 Secretion system effector C (SseC) like family BED32_19685 PF00072 Response regulator receiver domain BED32_19685 PF00196 Bacterial regulatory proteins, luxR family BED32_19690 PF00375 Sodium:dicarboxylate symporter family BED32_19695 PF13193 AMP-binding enzyme C-terminal domain BED32_19695 PF00501 AMP-binding enzyme BED32_19695 PF16177 Acetyl-coenzyme A synthetase N-terminus BED32_19700 PF04341 Protein of unknown function, DUF485 BED32_19705 PF00474 Sodium:solute symporter family BED32_19750 PF01808 AICARFT/IMPCHase bienzyme BED32_19750 PF02142 MGS-like domain BED32_19755 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BED32_19755 PF02843 Phosphoribosylglycinamide synthetase, C domain BED32_19755 PF02844 Phosphoribosylglycinamide synthetase, N domain BED32_19760 PF07356 Protein of unknown function (DUF1481) BED32_19765 PF00216 Bacterial DNA-binding protein BED32_19770 PF04222 Protein of unknown function (DUF416) BED32_19775 PF04493 Endonuclease V BED32_19780 PF01208 Uroporphyrinogen decarboxylase (URO-D) BED32_19785 PF09297 NADH pyrophosphatase zinc ribbon domain BED32_19785 PF00293 NUDIX domain BED32_19790 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BED32_19795 PF01964 Radical SAM ThiC family BED32_19795 PF13667 ThiC-associated domain BED32_19800 PF02581 Thiamine monophosphate synthase BED32_19805 PF00899 ThiF family BED32_19810 PF02597 ThiS family BED32_19815 PF05690 Thiazole biosynthesis protein ThiG BED32_19820 PF04055 Radical SAM superfamily BED32_19820 PF06968 Biotin and Thiamin Synthesis associated domain BED32_19825 PF01548 Transposase BED32_19825 PF02371 Transposase IS116/IS110/IS902 family BED32_19830 PF04997 RNA polymerase Rpb1, domain 1 BED32_19830 PF00623 RNA polymerase Rpb1, domain 2 BED32_19830 PF04983 RNA polymerase Rpb1, domain 3 BED32_19830 PF05000 RNA polymerase Rpb1, domain 4 BED32_19830 PF04998 RNA polymerase Rpb1, domain 5 BED32_19835 PF04565 RNA polymerase Rpb2, domain 3 BED32_19835 PF04561 RNA polymerase Rpb2, domain 2 BED32_19835 PF00562 RNA polymerase Rpb2, domain 6 BED32_19835 PF04563 RNA polymerase beta subunit BED32_19835 PF04560 RNA polymerase Rpb2, domain 7 BED32_19835 PF10385 RNA polymerase beta subunit external 1 domain BED32_19840 PF00542 Ribosomal protein L7/L12 C-terminal domain BED32_19840 PF16320 Ribosomal protein L7/L12 dimerisation domain BED32_19845 PF00466 Ribosomal protein L10 BED32_19850 PF00687 Ribosomal protein L1p/L10e family BED32_19855 PF03946 Ribosomal protein L11, N-terminal domain BED32_19855 PF00298 Ribosomal protein L11, RNA binding domain BED32_19860 PF02357 Transcription termination factor nusG BED32_19860 PF00467 KOW motif BED32_19865 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BED32_19870 PF03143 Elongation factor Tu C-terminal domain BED32_19870 PF03144 Elongation factor Tu domain 2 BED32_19870 PF00009 Elongation factor Tu GTP binding domain BED32_19905 PF00485 Phosphoribulokinase / Uridine kinase family BED32_19910 PF08279 HTH domain BED32_19910 PF03099 Biotin/lipoate A/B protein ligase family BED32_19910 PF02237 Biotin protein ligase C terminal domain BED32_19915 PF01565 FAD binding domain BED32_19915 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BED32_19920 PF01548 Transposase BED32_19920 PF02371 Transposase IS116/IS110/IS902 family BED32_19950 PF12724 Flavodoxin domain BED32_19955 PF02386 Cation transport protein BED32_19960 PF09186 Domain of unknown function (DUF1949) BED32_19960 PF01205 Uncharacterized protein family UPF0029 BED32_19965 PF00557 Metallopeptidase family M24 BED32_19970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED32_19970 PF00378 Enoyl-CoA hydratase/isomerase BED32_19970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED32_19975 PF02803 Thiolase, C-terminal domain BED32_19975 PF00108 Thiolase, N-terminal domain BED32_19980 PF00175 Oxidoreductase NAD-binding domain BED32_19980 PF00970 Oxidoreductase FAD-binding domain BED32_19985 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED32_19990 PF02357 Transcription termination factor nusG BED32_19995 PF00490 Delta-aminolevulinic acid dehydratase BED32_20000 PF01026 TatD related DNase BED32_20005 PF00902 Sec-independent protein translocase protein (TatC) BED32_20015 PF02416 mttA/Hcf106 family BED32_20020 PF03109 ABC1 family BED32_20025 PF02036 SCP-2 sterol transfer family BED32_20030 PF01209 ubiE/COQ5 methyltransferase family BED32_20045 PF02554 Carbon starvation protein CstA BED32_20045 PF13722 5TM C-terminal transporter carbon starvation CstA BED32_20055 PF01048 Phosphorylase superfamily BED32_20060 PF01738 Dienelactone hydrolase family BED32_20065 PF01717 Cobalamin-independent synthase, Catalytic domain BED32_20065 PF08267 Cobalamin-independent synthase, N-terminal domain BED32_20070 PF03466 LysR substrate binding domain BED32_20070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED32_20075 PF00892 EamA-like transporter family BED32_20080 PF03547 Membrane transport protein BED32_20085 PF03009 Glycerophosphoryl diester phosphodiesterase family BED32_20090 PF17912 MalK OB fold domain BED32_20090 PF00005 ABC transporter BED32_20095 PF00528 Binding-protein-dependent transport system inner membrane component BED32_20100 PF00528 Binding-protein-dependent transport system inner membrane component BED32_20105 PF13416 Bacterial extracellular solute-binding protein BED32_20140 PF00005 ABC transporter BED32_20145 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED32_20145 PF00005 ABC transporter BED32_20150 PF02653 Branched-chain amino acid transport system / permease component BED32_20150 PF11862 Domain of unknown function (DUF3382) BED32_20155 PF02653 Branched-chain amino acid transport system / permease component BED32_20160 PF13458 Periplasmic binding protein BED32_20165 PF12568 Acetyltransferase (GNAT) domain, PanZ BED32_20180 PF04542 Sigma-70 region 2 BED32_20180 PF00140 Sigma-70 factor, region 1.2 BED32_20180 PF04545 Sigma-70, region 4 BED32_20185 PF18075 FtsX extracellular domain BED32_20185 PF02687 FtsX-like permease family BED32_20190 PF00005 ABC transporter BED32_20195 PF02881 SRP54-type protein, helical bundle domain BED32_20195 PF00448 SRP54-type protein, GTPase domain BED32_20205 PF06611 Protein of unknown function (DUF1145) BED32_20220 PF07947 YhhN family BED32_20225 PF00403 Heavy-metal-associated domain BED32_20230 PF01206 Sulfurtransferase TusA BED32_20235 PF02592 Putative vitamin uptake transporter BED32_20240 PF08786 DcrB BED32_20245 PF13183 4Fe-4S dicluster domain BED32_20245 PF02754 Cysteine-rich domain BED32_20250 PF00890 FAD binding domain BED32_20255 PF04324 BFD-like [2Fe-2S] binding domain BED32_20255 PF01266 FAD dependent oxidoreductase BED32_20260 PF07690 Major Facilitator Superfamily BED32_20265 PF03009 Glycerophosphoryl diester phosphodiesterase family BED32_20275 PF12146 Serine aminopeptidase, S33 BED32_20280 PF01810 LysE type translocator BED32_20285 PF01810 LysE type translocator BED32_20290 PF00271 Helicase conserved C-terminal domain BED32_20290 PF00570 HRDC domain BED32_20290 PF09382 RQC domain BED32_20290 PF00270 DEAD/DEAH box helicase BED32_20290 PF16124 RecQ zinc-binding BED32_20295 PF02253 Phospholipase A1 BED32_20300 PF03061 Thioesterase superfamily BED32_20305 PF00892 EamA-like transporter family BED32_20310 PF01544 CorA-like Mg2+ transporter protein BED32_20315 PF09370 Phosphoenolpyruvate hydrolase-like BED32_20330 PF13361 UvrD-like helicase C-terminal domain BED32_20330 PF00580 UvrD/REP helicase N-terminal domain BED32_20335 PF13419 Haloacid dehalogenase-like hydrolase BED32_20340 PF02899 Phage integrase, N-terminal SAM-like domain BED32_20340 PF00589 Phage integrase family BED32_20345 PF04340 Protein of unknown function, DUF484 BED32_20350 PF01678 Diaminopimelate epimerase BED32_20355 PF13627 Prokaryotic lipoprotein-attachment site BED32_20360 PF01491 Frataxin-like domain BED32_20370 PF12633 Adenylate cyclase NT domain BED32_20370 PF01295 Adenylate cyclase, class-I BED32_20375 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BED32_20375 PF03900 Porphobilinogen deaminase, C-terminal domain BED32_20380 PF02602 Uroporphyrinogen-III synthase HemD BED32_20385 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BED32_20390 PF07719 Tetratricopeptide repeat BED32_20390 PF07219 HemY protein N-terminus BED32_20395 PF02371 Transposase IS116/IS110/IS902 family BED32_20395 PF01548 Transposase BED32_20425 PF03808 Glycosyl transferase WecB/TagA/CpsF family BED32_20430 PF06899 WzyE protein, O-antigen assembly polymerase BED32_20435 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 BED32_20440 PF01943 Polysaccharide biosynthesis protein BED32_20445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED32_20455 PF00483 Nucleotidyl transferase BED32_20460 PF16363 GDP-mannose 4,6 dehydratase BED32_20465 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED32_20465 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED32_20465 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED32_20470 PF02350 UDP-N-acetylglucosamine 2-epimerase BED32_20475 PF02706 Chain length determinant protein BED32_20480 PF00953 Glycosyl transferase family 4 BED32_20485 PF02371 Transposase IS116/IS110/IS902 family BED32_20485 PF01548 Transposase BED32_20490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED32_20490 PF07498 Rho termination factor, N-terminal domain BED32_20490 PF07497 Rho termination factor, RNA-binding domain BED32_20495 PF00085 Thioredoxin BED32_20500 PF00270 DEAD/DEAH box helicase BED32_20500 PF00271 Helicase conserved C-terminal domain BED32_20505 PF02541 Ppx/GppA phosphatase family BED32_20510 PF00295 Glycosyl hydrolases family 28 BED32_20515 PF13361 UvrD-like helicase C-terminal domain BED32_20515 PF00580 UvrD/REP helicase N-terminal domain BED32_20530 PF13592 Winged helix-turn helix BED32_20530 PF13358 DDE superfamily endonuclease BED32_20550 PF02661 Fic/DOC family BED32_20550 PF13784 Fic/DOC family N-terminal BED32_20585 PF13356 Arm DNA-binding domain BED32_20585 PF14659 Phage integrase, N-terminal SAM-like domain BED32_20585 PF00589 Phage integrase family BED32_20590 PF12833 Helix-turn-helix domain BED32_20595 PF02653 Branched-chain amino acid transport system / permease component BED32_20600 PF00005 ABC transporter BED32_20605 PF13407 Periplasmic binding protein domain BED32_20615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED32_20615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED32_20620 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED32_20620 PF02753 Pili assembly chaperone PapD, C-terminal domain BED32_20635 PF01757 Acyltransferase family BED32_20640 PF07690 Major Facilitator Superfamily BED32_20645 PF00009 Elongation factor Tu GTP binding domain BED32_20645 PF03144 Elongation factor Tu domain 2 BED32_20645 PF09106 Elongation factor SelB, winged helix BED32_20645 PF09107 Elongation factor SelB, winged helix BED32_20650 PF12390 Selenocysteine synthase N terminal BED32_20650 PF03841 L-seryl-tRNA selenium transferase BED32_20655 PF04216 Protein involved in formate dehydrogenase formation BED32_20660 PF01292 Prokaryotic cytochrome b561 BED32_20665 PF13247 4Fe-4S dicluster domain BED32_20665 PF09163 Formate dehydrogenase N, transmembrane BED32_20670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED32_20670 PF00384 Molybdopterin oxidoreductase BED32_20670 PF01568 Molydopterin dinucleotide binding domain BED32_20675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED32_20675 PF00384 Molybdopterin oxidoreductase BED32_20675 PF01568 Molydopterin dinucleotide binding domain BED32_20680 PF02634 FdhD/NarQ family BED32_20685 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED32_20685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED32_20690 PF00672 HAMP domain BED32_20690 PF02203 Tar ligand binding domain homologue BED32_20690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_20695 PF03473 MOSC domain BED32_20695 PF03475 3-alpha domain BED32_20700 PF01850 PIN domain BED32_20705 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BED32_20710 PF10928 Protein of unknown function (DUF2810) BED32_20715 PF00155 Aminotransferase class I and II BED32_20715 PF00392 Bacterial regulatory proteins, gntR family BED32_20725 PF05068 Mannitol repressor BED32_20730 PF08125 Mannitol dehydrogenase C-terminal domain BED32_20730 PF01232 Mannitol dehydrogenase Rossmann domain BED32_20735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED32_20735 PF02378 Phosphotransferase system, EIIC BED32_20735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED32_20740 PF11254 Protein of unknown function (DUF3053) BED32_20745 PF05746 DALR anticodon binding domain BED32_20745 PF02092 Glycyl-tRNA synthetase beta subunit BED32_20750 PF02091 Glycyl-tRNA synthetase alpha subunit BED32_20755 PF03352 Methyladenine glycosylase BED32_20760 PF00583 Acetyltransferase (GNAT) family BED32_20785 PF07690 Major Facilitator Superfamily BED32_20790 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED32_20790 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED32_20795 PF00128 Alpha amylase, catalytic domain BED32_20800 PF00155 Aminotransferase class I and II BED32_20805 PF02080 TrkA-C domain BED32_20805 PF06826 Predicted Permease Membrane Region BED32_20810 PF02371 Transposase IS116/IS110/IS902 family BED32_20810 PF01548 Transposase BED32_20815 PF07690 Major Facilitator Superfamily BED32_20830 PF00175 Oxidoreductase NAD-binding domain BED32_20830 PF00970 Oxidoreductase FAD-binding domain BED32_20835 PF05656 Protein of unknown function (DUF805) BED32_20840 PF07305 Protein of unknown function (DUF1454) BED32_20845 PF00121 Triosephosphate isomerase BED32_20860 PF00365 Phosphofructokinase BED32_20865 PF16916 Dimerisation domain of Zinc Transporter BED32_20865 PF01545 Cation efflux family BED32_20870 PF07813 LTXXQ motif family protein BED32_20875 PF00072 Response regulator receiver domain BED32_20875 PF00486 Transcriptional regulatory protein, C terminal BED32_20880 PF00672 HAMP domain BED32_20880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_20880 PF00512 His Kinase A (phospho-acceptor) domain BED32_20880 PF16527 Two-component sensor protein CpxA, periplasmic domain BED32_20885 PF02805 Metal binding domain of Ada BED32_20885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED32_20885 PF12833 Helix-turn-helix domain BED32_20885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED32_20890 PF00588 SpoU rRNA Methylase family BED32_20895 PF06426 Serine acetyltransferase, N-terminal BED32_20895 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_20900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BED32_20900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BED32_20905 PF02556 Preprotein translocase subunit SecB BED32_20910 PF00462 Glutaredoxin BED32_20915 PF00581 Rhodanese-like domain BED32_20920 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BED32_20920 PF01676 Metalloenzyme superfamily BED32_20925 PF01551 Peptidase family M23 BED32_20930 PF04748 Divergent polysaccharide deacetylase BED32_20945 PF00107 Zinc-binding dehydrogenase BED32_20945 PF08240 Alcohol dehydrogenase GroES-like domain BED32_20950 PF00155 Aminotransferase class I and II BED32_20955 PF01370 NAD dependent epimerase/dehydratase family BED32_20960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED32_20965 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED32_20970 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BED32_20975 PF00535 Glycosyl transferase family 2 BED32_20980 PF01467 Cytidylyltransferase-like BED32_20985 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BED32_20985 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BED32_20985 PF06827 Zinc finger found in FPG and IleRS BED32_20990 PF00471 Ribosomal protein L33 BED32_20995 PF00830 Ribosomal L28 family BED32_21000 PF04002 RadC-like JAB domain BED32_21005 PF02441 Flavoprotein BED32_21005 PF04127 DNA / pantothenate metabolism flavoprotein BED32_21010 PF00692 dUTPase BED32_21015 PF00440 Bacterial regulatory proteins, tetR family BED32_21020 PF00156 Phosphoribosyl transferase domain BED32_21025 PF01138 3' exoribonuclease family, domain 1 BED32_21025 PF03725 3' exoribonuclease family, domain 2 BED32_21030 PF08340 Domain of unknown function (DUF1732) BED32_21030 PF03755 YicC-like family, N-terminal region BED32_21035 PF00589 Phage integrase family BED32_21035 PF13356 Arm DNA-binding domain BED32_21055 PF10548 P22AR C-terminal domain BED32_21055 PF08346 AntA/AntB antirepressor BED32_21135 PF13426 PAS domain BED32_21135 PF00990 Diguanylate cyclase, GGDEF domain BED32_21135 PF00563 EAL domain BED32_21140 PF00378 Enoyl-CoA hydratase/isomerase BED32_21145 PF01773 Na+ dependent nucleoside transporter N-terminus BED32_21145 PF07670 Nucleoside recognition BED32_21145 PF07662 Na+ dependent nucleoside transporter C-terminus BED32_21150 PF13358 DDE superfamily endonuclease BED32_21150 PF13592 Winged helix-turn helix BED32_21160 PF03458 UPF0126 domain BED32_21170 PF00625 Guanylate kinase BED32_21175 PF01192 RNA polymerase Rpb6 BED32_21180 PF13291 ACT domain BED32_21180 PF04607 Region found in RelA / SpoT proteins BED32_21180 PF02824 TGS domain BED32_21185 PF12105 SpoU, rRNA methylase, C-terminal BED32_21185 PF00588 SpoU rRNA Methylase family BED32_21190 PF00271 Helicase conserved C-terminal domain BED32_21190 PF17191 RecG wedge domain BED32_21190 PF00270 DEAD/DEAH box helicase BED32_21195 PF03616 Sodium/glutamate symporter BED32_21200 PF00860 Permease family BED32_21205 PF05170 AsmA family BED32_21220 PF13693 Winged helix-turn-helix DNA-binding BED32_21225 PF00583 Acetyltransferase (GNAT) family BED32_21225 PF09500 Putative thioesterase (yiiD_Cterm) BED32_21230 PF02580 D-Tyr-tRNA(Tyr) deacylase BED32_21235 PF03631 Virulence factor BrkB BED32_21240 PF13419 Haloacid dehalogenase-like hydrolase BED32_21250 PF00120 Glutamine synthetase, catalytic domain BED32_21250 PF03951 Glutamine synthetase, beta-Grasp domain BED32_21260 PF00989 PAS fold BED32_21260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_21260 PF00512 His Kinase A (phospho-acceptor) domain BED32_21265 PF00158 Sigma-54 interaction domain BED32_21265 PF02954 Bacterial regulatory protein, Fis family BED32_21265 PF00072 Response regulator receiver domain BED32_21270 PF04055 Radical SAM superfamily BED32_21270 PF06969 HemN C-terminal domain BED32_21275 PF04220 Der GTPase activator (YihI) BED32_21280 PF01926 50S ribosome-binding GTPase BED32_21285 PF01367 5'-3' exonuclease, C-terminal SAM fold BED32_21285 PF01612 3'-5' exonuclease BED32_21285 PF00476 DNA polymerase family A BED32_21285 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED32_21290 PF01323 DSBA-like thioredoxin domain BED32_21295 PF01636 Phosphotransferase enzyme family BED32_21300 PF06288 Protein of unknown function (DUF1040) BED32_21305 PF12804 MobA-like NTP transferase domain BED32_21310 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BED32_21315 PF00665 Integrase core domain BED32_21315 PF13333 Integrase core domain BED32_21315 PF13276 HTH-like domain BED32_21345 PF07729 FCD domain BED32_21345 PF00392 Bacterial regulatory proteins, gntR family BED32_21350 PF07690 Major Facilitator Superfamily BED32_21355 PF00356 Bacterial regulatory proteins, lacI family BED32_21360 PF00294 pfkB family carbohydrate kinase BED32_21365 PF13407 Periplasmic binding protein domain BED32_21370 PF02653 Branched-chain amino acid transport system / permease component BED32_21375 PF00005 ABC transporter BED32_21380 PF05025 RbsD / FucU transport protein family BED32_21385 PF02705 K+ potassium transporter BED32_21390 PF17868 AAA lid domain BED32_21390 PF12592 Protein of unknown function (DUF3763) BED32_21390 PF07728 AAA domain (dynein-related subfamily) BED32_21395 PF05762 VWA domain containing CoxE-like protein BED32_21405 PF03590 Aspartate-ammonia ligase BED32_21410 PF01037 Lrp/AsnC ligand binding domain BED32_21415 PF00258 Flavodoxin BED32_21420 PF01134 Glucose inhibited division protein A BED32_21420 PF13932 GidA associated domain BED32_21425 PF02527 rRNA small subunit methyltransferase G BED32_21430 PF03899 ATP synthase I chain BED32_21435 PF00119 ATP synthase A chain BED32_21440 PF00137 ATP synthase subunit C BED32_21445 PF00430 ATP synthase B/B' CF(0) BED32_21450 PF00213 ATP synthase delta (OSCP) subunit BED32_21455 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED32_21455 PF00306 ATP synthase alpha/beta chain, C terminal domain BED32_21455 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED32_21460 PF00231 ATP synthase BED32_21465 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED32_21465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED32_21470 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BED32_21470 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BED32_21475 PF12804 MobA-like NTP transferase domain BED32_21475 PF00132 Bacterial transferase hexapeptide (six repeats) BED32_21480 PF01380 SIS domain BED32_21485 PF12849 PBP superfamily domain BED32_21490 PF00528 Binding-protein-dependent transport system inner membrane component BED32_21495 PF00528 Binding-protein-dependent transport system inner membrane component BED32_21500 PF00005 ABC transporter BED32_21505 PF01895 PhoU domain BED32_21515 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED32_21525 PF00528 Binding-protein-dependent transport system inner membrane component BED32_21530 PF13419 Haloacid dehalogenase-like hydrolase BED32_21535 PF00860 Permease family BED32_21545 PF00196 Bacterial regulatory proteins, luxR family BED32_21545 PF00072 Response regulator receiver domain BED32_21550 PF00512 His Kinase A (phospho-acceptor) domain BED32_21550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED32_21555 PF03358 NADPH-dependent FMN reductase BED32_21560 PF02203 Tar ligand binding domain homologue BED32_21560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED32_21560 PF00672 HAMP domain BED32_21565 PF00528 Binding-protein-dependent transport system inner membrane component BED32_21570 PF09383 NIL domain BED32_21570 PF00005 ABC transporter BED32_21580 PF07055 Enoyl reductase FAD binding domain BED32_21580 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BED32_21580 PF12241 Trans-2-enoyl-CoA reductase catalytic region BED32_21585 PF10396 GTP-binding protein TrmE N-terminus BED32_21585 PF12631 MnmE helical domain BED32_21585 PF01926 50S ribosome-binding GTPase BED32_21590 PF02096 60Kd inner membrane protein BED32_21590 PF14849 YidC periplasmic domain BED32_21595 PF01809 Putative membrane protein insertion efficiency factor BED32_21600 PF00825 Ribonuclease P BED32_21605 PF00468 Ribosomal protein L34 BED32_21615 PF13610 DDE domain BED32_21645 PF09134 Invasin, domain 3 BED32_21645 PF11924 Inverse autotransporter, beta-domain BED32_21645 PF02369 Bacterial Ig-like domain (group 1) BED32_21675 PF00589 Phage integrase family BED32_21715 PF18272 single-stranded DNA binding TraI N-terminal subdomain BED32_21715 PF07057 DNA helicase TraI BED32_21715 PF18340 DNA relaxase TraI 2B/2B-like domain BED32_21715 PF08751 TrwC relaxase BED32_21830 PF14319 Transposase zinc-binding domain BED32_21830 PF04986 Putative transposase BED32_21915 PF06834 TraU protein BED32_21940 PF06122 Conjugative relaxosome accessory transposon protein BED32_21955 PF00589 Phage integrase family BED32_21960 PF00239 Resolvase, N terminal domain BED32_21960 PF02796 Helix-turn-helix domain of resolvase BED32_21965 PF03212 Pertactin BED32_21965 PF13018 Extended Signal Peptide of Type V secretion system BED32_21965 PF16168 Adhesin of bacterial autotransporter system, probable stalk BED32_21965 PF03797 Autotransporter beta-domain BED32_21970 PF08479 POTRA domain, ShlB-type BED32_21970 PF17287 POTRA domain BED32_21970 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED32_21975 PF13018 Extended Signal Peptide of Type V secretion system BED32_21975 PF13332 Hemagglutinin repeat BED32_21975 PF05860 haemagglutination activity domain BED32_21975 PF04829 Pre-toxin domain with VENN motif BED32_22025 PF01527 Transposase BED32_22110 PF02369 Bacterial Ig-like domain (group 1) BED32_22110 PF11924 Inverse autotransporter, beta-domain BED32_22110 PF09134 Invasin, domain 3 BED32_22140 PF00589 Phage integrase family