BED32_01025 177e19482c0c97c68cbbf312eb61cc14 245 Gene3D G3DSA:3.40.50.300 1 242 3.9E-29 T 11-10-2018 BED32_01025 177e19482c0c97c68cbbf312eb61cc14 245 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 240 7.6E-83 T 11-10-2018 IPR017746 Cellulose synthase operon protein BcsQ BED32_01025 177e19482c0c97c68cbbf312eb61cc14 245 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 237 1.6E-110 T 11-10-2018 IPR017746 Cellulose synthase operon protein BcsQ BED32_01025 177e19482c0c97c68cbbf312eb61cc14 245 SUPERFAMILY SSF52540 1 236 2.2E-27 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 483 1.4E-183 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 Hamap MF_01879 Dipeptide and tripeptide permease B [dtpB]. 3 486 45.921 T 11-10-2018 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 145 157 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 Gene3D G3DSA:1.20.1250.20 6 483 2.7E-114 T 11-10-2018 BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 SUPERFAMILY SSF103473 10 228 7.32E-22 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 Pfam PF00854 POT family 82 442 5.6E-88 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BED32_10195 b5d489562a538e44d43ec4ce684380ff 493 SUPERFAMILY SSF103473 217 479 7.98E-10 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_22100 6a0f4d7126261bc231ef45ae9523b619 220 Gene3D G3DSA:3.20.80.10 80 209 1.2E-5 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_22100 6a0f4d7126261bc231ef45ae9523b619 220 Gene3D G3DSA:1.10.10.60 1 43 4.9E-8 T 11-10-2018 BED32_22100 6a0f4d7126261bc231ef45ae9523b619 220 SUPERFAMILY SSF46689 2 34 6.27E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03885 2125fc4b58dcd5300a89d023db6c630d 141 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BED32_03885 2125fc4b58dcd5300a89d023db6c630d 141 Pfam PF00460 Flagella basal body rod protein 8 31 1.1E-6 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03885 2125fc4b58dcd5300a89d023db6c630d 141 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 94 138 1.1E-9 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BED32_03885 2125fc4b58dcd5300a89d023db6c630d 141 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 6 139 1.3E-40 T 11-10-2018 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 Gene3D G3DSA:3.10.20.70 2 104 1.5E-41 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 SUPERFAMILY SSF55931 102 468 3.63E-137 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 1.2E-214 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 Gene3D G3DSA:3.30.590.10 105 457 4.5E-149 T 11-10-2018 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 SMART SM01230 102 379 1.2E-147 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 4.2E-137 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 SUPERFAMILY SSF54368 3 99 2.22E-36 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BED32_21250 78bc5bbf6873b0d6949ac878a251440b 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 4.9E-32 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 BED32_13940 91e581c677b5cc7e92def940aab54c2c 202 Gene3D G3DSA:1.20.144.10 94 185 1.5E-18 T 11-10-2018 BED32_13940 91e581c677b5cc7e92def940aab54c2c 202 SUPERFAMILY SSF48317 2 172 3.4E-37 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BED32_13940 91e581c677b5cc7e92def940aab54c2c 202 SMART SM00014 60 169 1.5E-22 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_13940 91e581c677b5cc7e92def940aab54c2c 202 Pfam PF01569 PAP2 superfamily 66 169 7.0E-14 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_02170 84d9d3da8562c2f45c1e31eb61307148 135 Pfam PF06146 Phosphate-starvation-inducible E 60 122 1.6E-13 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like BED32_02170 84d9d3da8562c2f45c1e31eb61307148 135 PIRSF PIRSF029598 1 135 4.2E-46 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 BED32_02170 84d9d3da8562c2f45c1e31eb61307148 135 Hamap MF_01048 Protein PsiE [psiE]. 1 135 25.543 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 Gene3D G3DSA:3.30.450.90 75 210 4.0E-40 T 11-10-2018 BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 Gene3D G3DSA:3.40.50.300 211 482 2.8E-98 T 11-10-2018 BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 18 74 2.9E-5 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 304 318 - T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 SUPERFAMILY SSF52540 91 478 8.31E-93 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 Pfam PF00437 Type II/IV secretion system protein 117 376 1.2E-78 T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_17800 06a45fb3b8fe6809225bebdc400a9a17 488 SUPERFAMILY SSF160246 18 74 7.59E-6 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily BED32_03405 39725393be456406452c3f4402aaecad 582 Pfam PF08278 DNA primase DnaG DnaB-binding 451 574 2.3E-35 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BED32_03405 39725393be456406452c3f4402aaecad 582 SMART SM00400 36 90 1.4E-36 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BED32_03405 39725393be456406452c3f4402aaecad 582 Hamap MF_00974 DNA primase [dnaG]. 4 576 30.538 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BED32_03405 39725393be456406452c3f4402aaecad 582 Pfam PF13155 Toprim-like 263 348 2.0E-14 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 Gene3D G3DSA:3.90.980.10 115 240 2.9E-48 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily BED32_03405 39725393be456406452c3f4402aaecad 582 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 251 4.7E-44 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal BED32_03405 39725393be456406452c3f4402aaecad 582 SMART SM00766 450 575 8.9E-56 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 BED32_03405 39725393be456406452c3f4402aaecad 582 SUPERFAMILY SSF56731 115 427 9.59E-115 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 PIRSF PIRSF002811 2 581 2.3E-147 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 BED32_03405 39725393be456406452c3f4402aaecad 582 Gene3D G3DSA:3.90.580.10 1 101 1.7E-37 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 BED32_03405 39725393be456406452c3f4402aaecad 582 Gene3D G3DSA:3.40.1360.10 241 367 1.8E-44 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 SUPERFAMILY SSF57783 4 100 3.4E-35 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 Gene3D G3DSA:1.10.860.10 434 581 3.7E-53 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BED32_03405 39725393be456406452c3f4402aaecad 582 Pfam PF10410 DnaB-helicase binding domain of primase 370 424 2.5E-12 T 11-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 BED32_03405 39725393be456406452c3f4402aaecad 582 Gene3D G3DSA:1.20.50.20 368 426 7.8E-29 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 Pfam PF01807 CHC2 zinc finger 8 100 1.3E-40 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 BED32_03405 39725393be456406452c3f4402aaecad 582 SMART SM00493 259 330 1.8E-22 T 11-10-2018 IPR006171 TOPRIM domain BED32_03405 39725393be456406452c3f4402aaecad 582 SUPERFAMILY SSF117023 447 578 7.85E-47 T 11-10-2018 BED32_03405 39725393be456406452c3f4402aaecad 582 TIGRFAM TIGR01391 dnaG: DNA primase 5 419 4.0E-151 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 SMART SM00421 143 200 1.4E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 SMART SM00448 2 115 1.0E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 160 187 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 Gene3D G3DSA:3.40.50.12740 2 206 1.7E-55 T 11-10-2018 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 176 188 1.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 146 160 1.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 176 1.7E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 SUPERFAMILY SSF52172 1 125 5.12E-27 T 11-10-2018 IPR011006 CheY-like superfamily BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 145 200 1.0E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 Pfam PF00072 Response regulator receiver domain 4 115 4.5E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09210 0eea33c7249347eb9aec148e05e43e3d 209 SUPERFAMILY SSF46894 130 206 1.73E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 SMART SM00354 1 73 2.2E-22 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 Gene3D G3DSA:3.40.50.2300 72 311 8.4E-45 T 11-10-2018 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 SUPERFAMILY SSF53822 69 331 7.25E-41 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 SUPERFAMILY SSF47413 1 59 3.13E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 63 324 3.2E-53 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.3E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 Gene3D G3DSA:3.40.50.2300 161 295 8.4E-45 T 11-10-2018 BED32_12920 c4286d1002f11f08c14fce61662bfb17 331 Gene3D G3DSA:1.10.260.40 1 58 8.0E-19 T 11-10-2018 BED32_20025 be11da23ba754723167f835f0d5b52ad 217 Pfam PF02036 SCP-2 sterol transfer family 30 128 3.1E-20 T 11-10-2018 IPR003033 SCP2 sterol-binding domain BED32_20025 be11da23ba754723167f835f0d5b52ad 217 SUPERFAMILY SSF55718 31 128 4.12E-8 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily BED32_04865 927418e6d222278223b9325e7f36d279 814 Gene3D G3DSA:3.40.50.740 54 322 2.4E-88 T 11-10-2018 BED32_04865 927418e6d222278223b9325e7f36d279 814 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 57 116 2.2E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04865 927418e6d222278223b9325e7f36d279 814 Gene3D G3DSA:3.40.228.10 345 420 2.0E-18 T 11-10-2018 BED32_04865 927418e6d222278223b9325e7f36d279 814 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 61 79 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 BED32_04865 927418e6d222278223b9325e7f36d279 814 SMART SM00926 56 116 1.9E-8 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04865 927418e6d222278223b9325e7f36d279 814 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 517 534 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 BED32_04865 927418e6d222278223b9325e7f36d279 814 SUPERFAMILY SSF50692 687 814 9.72E-38 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_04865 927418e6d222278223b9325e7f36d279 814 Pfam PF00384 Molybdopterin oxidoreductase 119 576 5.0E-108 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04865 927418e6d222278223b9325e7f36d279 814 Gene3D G3DSA:2.40.40.20 670 814 3.3E-41 T 11-10-2018 BED32_04865 927418e6d222278223b9325e7f36d279 814 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 731 758 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 BED32_04865 927418e6d222278223b9325e7f36d279 814 SUPERFAMILY SSF53706 57 697 4.06E-177 T 11-10-2018 BED32_04865 927418e6d222278223b9325e7f36d279 814 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 14 814 0.0 T 11-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 BED32_04865 927418e6d222278223b9325e7f36d279 814 Gene3D G3DSA:3.40.50.740 428 625 8.7E-52 T 11-10-2018 BED32_04865 927418e6d222278223b9325e7f36d279 814 Pfam PF01568 Molydopterin dinucleotide binding domain 695 806 1.2E-26 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 153 340 4.08E-50 T 11-10-2018 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 Pfam PF06723 MreB/Mbl protein 11 338 9.8E-150 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.2E-65 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.2E-65 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.2E-65 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.2E-65 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.2E-65 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 158 321 6.2E-130 T 11-10-2018 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 SUPERFAMILY SSF53067 9 152 8.89E-38 T 11-10-2018 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 9.1E-170 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.30.420.40 14 331 6.2E-130 T 11-10-2018 BED32_02465 848518961cfbdb5db3798bf3ff69c37b 347 Gene3D G3DSA:3.90.640.10 190 263 6.2E-130 T 11-10-2018 BED32_07385 17aad9015cb501e2be8b57138b800421 321 Gene3D G3DSA:3.20.20.70 82 294 4.7E-20 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_07385 17aad9015cb501e2be8b57138b800421 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 1.6E-159 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07385 17aad9015cb501e2be8b57138b800421 321 SUPERFAMILY SSF102114 53 316 1.22E-66 T 11-10-2018 BED32_07385 17aad9015cb501e2be8b57138b800421 321 SMART SM00729 84 293 3.3E-16 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_07385 17aad9015cb501e2be8b57138b800421 321 Pfam PF04055 Radical SAM superfamily 91 251 2.8E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_07385 17aad9015cb501e2be8b57138b800421 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 155.58 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07385 17aad9015cb501e2be8b57138b800421 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 27 73 7.0E-7 T 11-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07385 17aad9015cb501e2be8b57138b800421 321 PIRSF PIRSF005963 2 320 2.5E-130 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_02500 7d47fbfb7865d3cdf8b2db07ebf6bd66 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 5.7E-68 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 BED32_02500 7d47fbfb7865d3cdf8b2db07ebf6bd66 481 PIRSF PIRSF004919 14 481 7.2E-147 T 11-10-2018 IPR025502 TldD BED32_02500 7d47fbfb7865d3cdf8b2db07ebf6bd66 481 Gene3D G3DSA:3.30.2290.10 11 240 4.7E-18 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal BED32_02500 7d47fbfb7865d3cdf8b2db07ebf6bd66 481 SUPERFAMILY SSF111283 18 480 6.8E-131 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 Gene3D G3DSA:2.30.30.60 947 996 1.1E-10 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 961 995 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 Pfam PF00924 Mechanosensitive ion channel 889 1087 2.5E-52 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 Pfam PF12795 Mechanosensitive ion channel porin domain 40 269 5.7E-63 T 11-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 SUPERFAMILY SSF50182 932 997 9.81E-17 T 11-10-2018 IPR010920 LSM domain superfamily BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 SUPERFAMILY SSF82689 999 1094 8.63E-15 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 SUPERFAMILY SSF82861 847 930 2.09E-8 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 492 828 3.3E-117 T 11-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 BED32_19280 2c2fc67e1d81a65d9f7203ce2b58b371 1117 Gene3D G3DSA:3.30.70.100 1000 1092 2.6E-8 T 11-10-2018 BED32_12325 8fce8c2cf5360e1ac00633d8f2011b2c 176 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 22.414 T 11-10-2018 IPR022920 Disulphide bond formation protein DsbB BED32_12325 8fce8c2cf5360e1ac00633d8f2011b2c 176 Pfam PF02600 Disulfide bond formation protein DsbB 12 159 1.7E-44 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 BED32_12325 8fce8c2cf5360e1ac00633d8f2011b2c 176 SUPERFAMILY SSF158442 15 161 1.57E-45 T 11-10-2018 IPR023380 DsbB-like superfamily BED32_12325 8fce8c2cf5360e1ac00633d8f2011b2c 176 Gene3D G3DSA:1.20.1550.10 1 176 9.6E-69 T 11-10-2018 IPR023380 DsbB-like superfamily BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 11 632 1.9E-195 T 11-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 9 632 34.307 T 11-10-2018 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0015420|GO:0015889|GO:0016020 BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 Pfam PF00593 TonB dependent receptor 182 631 1.8E-44 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 Gene3D G3DSA:2.40.170.20 163 632 1.1E-135 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 SUPERFAMILY SSF56935 37 632 1.96E-120 T 11-10-2018 BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 615 632 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 157 1.8E-26 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_00710 17f2ca9367caf4e9aa71e5f7731db680 632 Gene3D G3DSA:2.170.130.10 32 162 5.1E-36 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 Gene3D G3DSA:3.40.50.720 14 247 2.0E-54 T 11-10-2018 BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 SUPERFAMILY SSF51735 18 245 7.22E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 27 245 6.9E-36 T 11-10-2018 BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 7.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 7.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 7.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_08205 5d32195e0d8eaf7853bb13375cd31cf8 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 7.3E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 20.969 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 Gene3D G3DSA:3.30.2320.80 1 113 2.5E-29 T 11-10-2018 BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 11-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 PIRSF PIRSF004761 1 113 2.3E-36 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 113 7.4E-37 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_04030 8041b111b4f314d9498d318c8e9274bc 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 7.3E-31 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Gene3D G3DSA:3.30.450.20 77 190 3.7E-9 T 11-10-2018 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Pfam PF11808 Domain of unknown function (DUF3329) 2 82 4.5E-27 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 87 411 3.3E-135 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 304 414 2.1E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SUPERFAMILY SSF55785 78 186 1.34E-12 T 11-10-2018 IPR035965 PAS domain superfamily BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Pfam PF00512 His Kinase A (phospho-acceptor) domain 194 259 3.4E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SUPERFAMILY SSF47384 181 259 3.73E-20 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SMART SM00388 194 260 9.6E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SUPERFAMILY SSF55874 250 414 9.56E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Pfam PF00989 PAS fold 90 185 2.1E-9 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Gene3D G3DSA:1.10.287.130 191 260 6.5E-23 T 11-10-2018 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SMART SM00387 304 416 1.8E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 413 7.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 369 7.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 341 355 7.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 394 7.6E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 89 202 8.2E-9 T 11-10-2018 IPR000014 PAS domain BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 Gene3D G3DSA:3.30.565.10 264 416 4.6E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_05860 bc3cb6660bd1f14713fccaebdf883ae4 429 SMART SM00091 89 155 9.9E-8 T 11-10-2018 IPR000014 PAS domain BED32_04220 a23066cab4354332fe7b38eea894c055 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 2.5E-49 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BED32_04220 a23066cab4354332fe7b38eea894c055 720 Gene3D G3DSA:3.40.640.10 109 420 6.5E-85 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_04220 a23066cab4354332fe7b38eea894c055 720 SUPERFAMILY SSF52172 1 108 6.96E-35 T 11-10-2018 IPR011006 CheY-like superfamily BED32_04220 a23066cab4354332fe7b38eea894c055 720 SUPERFAMILY SSF53383 109 567 1.31E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_04220 a23066cab4354332fe7b38eea894c055 720 Gene3D G3DSA:3.90.100.10 601 720 1.5E-44 T 11-10-2018 BED32_04220 a23066cab4354332fe7b38eea894c055 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 5 103 8.8E-24 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 BED32_04220 a23066cab4354332fe7b38eea894c055 720 PIRSF PIRSF009393 1 720 8.1E-289 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 BED32_04220 a23066cab4354332fe7b38eea894c055 720 Gene3D G3DSA:3.40.50.220 1 108 6.9E-28 T 11-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_04220 a23066cab4354332fe7b38eea894c055 720 Gene3D G3DSA:3.90.1150.10 421 600 3.6E-72 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_04220 a23066cab4354332fe7b38eea894c055 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 551 6.7E-193 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_04220 a23066cab4354332fe7b38eea894c055 720 SUPERFAMILY SSF55904 571 719 8.5E-47 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BED32_04220 a23066cab4354332fe7b38eea894c055 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 719 0.0 T 11-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 243 1.8E-53 T 11-10-2018 BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 SUPERFAMILY SSF51735 4 244 3.91E-70 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 Gene3D G3DSA:3.40.50.720 1 243 9.6E-70 T 11-10-2018 BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 8.6E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 8.6E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 8.6E-7 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.4E-33 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_04755 e0f8e65afbe56daf6c5f3442c6936118 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 187 1.1E-5 T 11-10-2018 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 Gene3D G3DSA:1.20.1250.20 201 399 3.7E-65 T 11-10-2018 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 ProSitePatterns PS00896 LacY family proton/sugar symporters signature 1. 64 78 - T 11-10-2018 IPR018457 LacY/RafB permease family, conserved site BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 Pfam PF01306 LacY proton/sugar symporter 6 400 1.5E-141 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 TIGRFAM TIGR00882 2A0105: oligosaccharide:H+ symporter 7 397 3.8E-141 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 257 278 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 281 307 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 103 125 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 212 240 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 68 97 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 145 163 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 343 363 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 PRINTS PR00174 LacY proton/sugar symporter family signature 312 331 3.3E-80 T 11-10-2018 IPR000576 LacY/RafB permease family GO:0005351|GO:0008643|GO:0016020 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 Gene3D G3DSA:1.20.1250.20 5 194 3.6E-36 T 11-10-2018 BED32_12930 e8126d7697bd3dbf8d5a780fe5b7488e 413 SUPERFAMILY SSF103473 8 399 1.14E-39 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_18560 30452ffee97cc70ae2eb35c25b28c4a9 330 Gene3D G3DSA:3.40.50.1360 81 328 5.3E-84 T 11-10-2018 BED32_18560 30452ffee97cc70ae2eb35c25b28c4a9 330 Pfam PF04198 Putative sugar-binding domain 79 327 1.3E-69 T 11-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 BED32_18560 30452ffee97cc70ae2eb35c25b28c4a9 330 SUPERFAMILY SSF100950 79 329 4.56E-59 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_18560 30452ffee97cc70ae2eb35c25b28c4a9 330 Gene3D G3DSA:1.10.10.10 14 75 3.8E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 SMART SM00640 31 432 3.6E-134 T 11-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 31 336 1.4E-102 T 11-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 Gene3D G3DSA:2.60.120.560 401 460 3.3E-8 T 11-10-2018 BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 SUPERFAMILY SSF49899 336 462 1.03E-16 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 31 44 - T 11-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 Gene3D G3DSA:2.115.10.20 3 352 1.4E-111 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 SUPERFAMILY SSF75005 21 336 3.0E-109 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 16 442 3.5E-156 T 11-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BED32_18450 ddc5c8c626344e622b106cfb020ccaa4 469 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 414 446 5.5E-7 T 11-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 158 8.0E-82 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 6.6E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 6.6E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 6.6E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 6.6E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 6.6E-42 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 SUPERFAMILY SSF53098 3 156 2.69E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.048 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 3.7E-65 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 BED32_10180 97f389475c2a7330cf5ae62a0a1d1c04 173 Gene3D G3DSA:3.30.420.10 2 159 5.3E-54 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_16290 83eaac6e131940adbd01771638c8b524 239 Hamap MF_01872 tRNA1(Val) (adenine(37)-N6)-methyltransferase [yfiC]. 5 239 54.949 T 11-10-2018 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase GO:0016430 BED32_16290 83eaac6e131940adbd01771638c8b524 239 Gene3D G3DSA:3.40.50.150 5 235 4.0E-57 T 11-10-2018 BED32_16290 83eaac6e131940adbd01771638c8b524 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 42 56 3.7E-5 T 11-10-2018 BED32_16290 83eaac6e131940adbd01771638c8b524 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 140 164 3.7E-5 T 11-10-2018 BED32_16290 83eaac6e131940adbd01771638c8b524 239 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 110 122 3.7E-5 T 11-10-2018 BED32_16290 83eaac6e131940adbd01771638c8b524 239 Pfam PF05175 Methyltransferase small domain 37 168 1.3E-14 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BED32_16290 83eaac6e131940adbd01771638c8b524 239 SUPERFAMILY SSF53335 9 192 8.66E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_16290 83eaac6e131940adbd01771638c8b524 239 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 113 119 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 Gene3D G3DSA:3.40.190.10 117 243 3.5E-56 T 11-10-2018 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 Gene3D G3DSA:3.40.190.10 31 271 3.5E-56 T 11-10-2018 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 44 292 1.7E-47 T 11-10-2018 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 SUPERFAMILY SSF53850 44 299 3.72E-48 T 11-10-2018 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 305 2.8E-100 T 11-10-2018 IPR017797 Phosphonate ABC transporter, substrate-binding protein GO:0015716|GO:0043190 BED32_08120 05efca00ec0daf13a0a4c964cd07d3e8 309 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 268 2.1E-84 T 11-10-2018 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 87 107 3.2E-10 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 420 442 3.2E-10 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 61 85 3.2E-10 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 268 290 3.2E-10 T 11-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 BED32_14560 b1284aefe0877f117385b0121881e652 614 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 611 1.9E-232 T 11-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14560 b1284aefe0877f117385b0121881e652 614 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 67 124 2.7E-23 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 250 276 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 318 330 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 421 440 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 113 133 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 160 181 2.1E-56 T 11-10-2018 BED32_14560 b1284aefe0877f117385b0121881e652 614 Pfam PF00361 Proton-conducting membrane transporter 136 428 1.0E-94 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_10525 2a882660919f83ac208fee7de91caeeb 278 PIRSF PIRSF006625 1 278 7.9E-137 T 11-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BED32_10525 2a882660919f83ac208fee7de91caeeb 278 SUPERFAMILY SSF51182 1 262 1.21E-106 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_10525 2a882660919f83ac208fee7de91caeeb 278 Gene3D G3DSA:2.60.120.10 10 264 8.7E-122 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_10525 2a882660919f83ac208fee7de91caeeb 278 Gene3D G3DSA:2.60.120.520 30 144 8.7E-122 T 11-10-2018 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BED32_10525 2a882660919f83ac208fee7de91caeeb 278 Hamap MF_00687 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [kduI]. 1 278 56.304 T 11-10-2018 IPR007045 5-keto 4-deoxyuronate isomerase GO:0008697|GO:0045490 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BED32_10525 2a882660919f83ac208fee7de91caeeb 278 Pfam PF04962 KduI/IolB family 69 272 7.4E-35 T 11-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BED32_17575 c036852898338a71d737fcc7210c9dcd 287 SUPERFAMILY SSF53807 35 276 3.36E-55 T 11-10-2018 BED32_17575 c036852898338a71d737fcc7210c9dcd 287 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 15 280 51.262 T 11-10-2018 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 BED32_17575 c036852898338a71d737fcc7210c9dcd 287 Gene3D G3DSA:3.40.50.1980 34 153 3.5E-37 T 11-10-2018 BED32_17575 c036852898338a71d737fcc7210c9dcd 287 Pfam PF01497 Periplasmic binding protein 38 235 1.4E-24 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_17575 c036852898338a71d737fcc7210c9dcd 287 Gene3D G3DSA:3.40.50.1980 155 278 1.7E-32 T 11-10-2018 BED32_03890 998cdcec3e880226c61ec5d317e0352d 219 Pfam PF13860 FlgD Ig-like domain 105 175 4.0E-10 T 11-10-2018 IPR025965 FlgD Ig-like domain BED32_03890 998cdcec3e880226c61ec5d317e0352d 219 Gene3D G3DSA:2.30.30.910 93 214 9.0E-19 T 11-10-2018 BED32_03890 998cdcec3e880226c61ec5d317e0352d 219 Gene3D G3DSA:2.60.40.4070 103 182 9.0E-19 T 11-10-2018 BED32_03890 998cdcec3e880226c61ec5d317e0352d 219 Pfam PF13861 FlgD Tudor-like domain 87 215 1.0E-9 T 11-10-2018 IPR025963 FlgD Tudor-like domain BED32_03890 998cdcec3e880226c61ec5d317e0352d 219 Pfam PF03963 Flagellar hook capping protein - N-terminal region 23 78 1.1E-18 T 11-10-2018 IPR005648 Flagellar hook capping protein BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 Gene3D G3DSA:3.20.20.70 2 359 3.6E-153 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 SUPERFAMILY SSF51569 4 357 1.9E-131 T 11-10-2018 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 172 183 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 101 112 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 358 9.3E-190 T 11-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 357 2.6E-114 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 355 1.5E-88 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_04455 9e7d2a899b5d789b3d06cdfb60a41c14 359 PIRSF PIRSF001359 13 359 1.3E-102 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_07750 653eed500e647aa4b388f3288b00841f 588 SUPERFAMILY SSF51905 4 441 2.09E-76 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_07750 653eed500e647aa4b388f3288b00841f 588 Gene3D G3DSA:1.20.58.100 431 547 6.7E-39 T 11-10-2018 BED32_07750 653eed500e647aa4b388f3288b00841f 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 6.2E-241 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 SUPERFAMILY SSF56425 236 356 6.58E-42 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 SUPERFAMILY SSF46977 452 588 2.22E-44 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 Gene3D G3DSA:3.50.50.60 9 416 5.5E-172 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_07750 653eed500e647aa4b388f3288b00841f 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 3.5E-34 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 Pfam PF00890 FAD binding domain 9 405 7.7E-117 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 PIRSF PIRSF000171 1 580 6.1E-46 T 11-10-2018 BED32_07750 653eed500e647aa4b388f3288b00841f 588 Gene3D G3DSA:3.90.700.10 246 350 5.5E-172 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 7.0E-5 T 11-10-2018 BED32_07750 653eed500e647aa4b388f3288b00841f 588 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.0E-5 T 11-10-2018 BED32_07750 653eed500e647aa4b388f3288b00841f 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 6 588 5.3E-275 T 11-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07750 653eed500e647aa4b388f3288b00841f 588 Gene3D G3DSA:4.10.80.40 548 588 7.9E-25 T 11-10-2018 BED32_07750 653eed500e647aa4b388f3288b00841f 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 Gene3D G3DSA:3.40.50.360 1 146 4.0E-49 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 PRINTS PR00369 Flavodoxin signature 51 62 8.9E-8 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 PRINTS PR00369 Flavodoxin signature 5 18 8.9E-8 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 PRINTS PR00369 Flavodoxin signature 106 125 8.9E-8 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 PRINTS PR00369 Flavodoxin signature 82 92 8.9E-8 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 Pfam PF00258 Flavodoxin 7 138 1.5E-25 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BED32_21415 85b5c23b3ab05c4fda78e2e69271bc3c 146 SUPERFAMILY SSF52218 1 146 1.01E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 7.0E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 PRINTS PR00111 Alpha/beta hydrolase fold signature 85 98 7.0E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 PRINTS PR00111 Alpha/beta hydrolase fold signature 99 112 7.0E-5 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 Gene3D G3DSA:3.40.50.1820 1 254 1.8E-74 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 SUPERFAMILY SSF53474 2 253 1.23E-52 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_07610 874f7882d350d5b6daf9132b8f2fe438 264 Pfam PF12697 Alpha/beta hydrolase family 19 246 6.5E-22 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 SUPERFAMILY SSF53706 36 195 1.44E-57 T 11-10-2018 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 Gene3D G3DSA:2.20.25.90 44 105 1.5E-16 T 11-10-2018 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 Gene3D G3DSA:3.40.50.740 107 195 3.6E-35 T 11-10-2018 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 SMART SM00926 43 104 4.1E-22 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 103 1.7E-19 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 Pfam PF00384 Molybdopterin oxidoreductase 107 145 4.6E-6 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_20675 21a5b913f58ca5f8c4930d0cb0a63b11 195 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 48 66 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 1.5E-49 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 SUPERFAMILY SSF51905 1 314 1.52E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 Gene3D G3DSA:3.50.50.60 118 244 5.1E-129 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 8.9E-76 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 1.0E-125 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 Gene3D G3DSA:3.50.50.60 9 311 5.1E-129 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.4E-41 T 11-10-2018 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 6.4E-41 T 11-10-2018 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 6.4E-41 T 11-10-2018 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 6.4E-41 T 11-10-2018 BED32_13755 e1675cf3323ec37493abd57afe7df14c 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 6.4E-41 T 11-10-2018 BED32_13620 b3eed82707126ae04b6e3f8d5a0ae3ae 60 Gene3D G3DSA:2.20.25.10 8 60 3.4E-23 T 11-10-2018 BED32_13620 b3eed82707126ae04b6e3f8d5a0ae3ae 60 Pfam PF03966 Trm112p-like protein 2 41 9.6E-9 T 11-10-2018 IPR005651 Trm112-like BED32_13620 b3eed82707126ae04b6e3f8d5a0ae3ae 60 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 26.584 T 11-10-2018 IPR038053 Uncharacterised protein family UPF0434 BED32_13620 b3eed82707126ae04b6e3f8d5a0ae3ae 60 SUPERFAMILY SSF158997 1 54 8.11E-20 T 11-10-2018 BED32_04905 9592b5ccbd35b5c05de5438a8f9ba78b 167 Gene3D G3DSA:1.10.10.10 1 70 2.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04905 9592b5ccbd35b5c05de5438a8f9ba78b 167 Hamap MF_01114 Regulatory protein RecX [recX]. 2 167 15.088 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BED32_04905 9592b5ccbd35b5c05de5438a8f9ba78b 167 Pfam PF02631 RecX family 51 163 9.7E-32 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 BED32_04905 9592b5ccbd35b5c05de5438a8f9ba78b 167 Gene3D G3DSA:1.10.10.10 71 116 2.9E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04905 9592b5ccbd35b5c05de5438a8f9ba78b 167 Gene3D G3DSA:1.10.10.10 117 167 5.3E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11570 54e378646dc29cd967fa0a44d701772d 233 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 210 28.138 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 BED32_11570 54e378646dc29cd967fa0a44d701772d 233 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 7 209 6.9E-85 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 BED32_11570 54e378646dc29cd967fa0a44d701772d 233 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 199 1.1E-63 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_11570 54e378646dc29cd967fa0a44d701772d 233 PIRSF PIRSF006102 1 219 4.3E-77 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 Gene3D G3DSA:3.40.710.10 254 610 1.6E-64 T 11-10-2018 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 SUPERFAMILY SSF53955 41 261 2.73E-64 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_16015 76235adc742ab38b2612d3a4c24de325 778 Gene3D G3DSA:1.10.3810.10 57 252 2.6E-54 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 691 772 1.2E-16 T 11-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 Pfam PF00912 Transglycosylase 63 228 7.6E-50 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 SUPERFAMILY SSF56601 210 644 2.21E-93 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_16015 76235adc742ab38b2612d3a4c24de325 778 Pfam PF00905 Penicillin binding protein transpeptidase domain 306 424 7.4E-9 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_16015 76235adc742ab38b2612d3a4c24de325 778 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 40 776 6.5E-246 T 11-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82714 178 260 4.84E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.70.1430 35 792 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82866 285 486 2.35E-46 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82693 550 645 8.55E-18 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82693 660 827 8.11E-6 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:1.20.1640.10 498 1000 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.70.1320 130 321 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82693 35 130 4.19E-23 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 325 348 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 433 456 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 33 51 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 352 373 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 600 614 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 380 404 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 458 481 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 537 554 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 PRINTS PR00702 Acriflavin resistance protein family signature 5 29 1.2E-85 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82866 807 1005 2.35E-41 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82693 131 319 3.92E-22 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:1.20.1640.10 5 497 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC]. 1 1019 27.033 T 11-10-2018 IPR023931 Multidrug resistance protein MdtC BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.70.1440 645 842 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.70.1430 552 644 8.9E-294 T 11-10-2018 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.2090.10 174 264 8.9E-294 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Pfam PF00873 AcrB/AcrD/AcrF family 1 1003 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 SUPERFAMILY SSF82714 698 780 5.75E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15760 a7ab638d4209f817e431eb9d0d723015 1019 Gene3D G3DSA:3.30.2090.10 696 784 8.9E-294 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_02650 bffdcfa33b36f8ef4dd1adbf405f7010 595 Pfam PF17289 Terminase RNaseH-like domain 418 576 5.3E-35 T 11-10-2018 IPR035421 Terminase, large subunit gp17-like BED32_02650 bffdcfa33b36f8ef4dd1adbf405f7010 595 Pfam PF03237 Terminase-like family 169 390 4.0E-51 T 11-10-2018 IPR004921 Terminase large subunit, T4likevirus-type BED32_02650 bffdcfa33b36f8ef4dd1adbf405f7010 595 Pfam PF06056 Putative ATPase subunit of terminase (gpP-like) 11 64 2.9E-15 T 11-10-2018 IPR010332 ATPase terminase subunit, putative GO:0005524|GO:0019069 BED32_02650 bffdcfa33b36f8ef4dd1adbf405f7010 595 Gene3D G3DSA:3.40.50.300 88 313 2.6E-20 T 11-10-2018 BED32_02650 bffdcfa33b36f8ef4dd1adbf405f7010 595 Gene3D G3DSA:3.30.420.240 400 577 8.2E-11 T 11-10-2018 BED32_15945 a231ba877b877382471bcab77d9dab68 74 Pfam PF07191 zinc-ribbons 4 68 1.6E-26 T 11-10-2018 IPR010807 Protein of unknown function DUF1407 BED32_15945 a231ba877b877382471bcab77d9dab68 74 Gene3D G3DSA:2.10.290.10 1 71 3.2E-26 T 11-10-2018 IPR029037 YfgJ-like BED32_15945 a231ba877b877382471bcab77d9dab68 74 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 5.0E-27 T 11-10-2018 IPR010807 Protein of unknown function DUF1407 BED32_15945 a231ba877b877382471bcab77d9dab68 74 SUPERFAMILY SSF161187 1 70 2.22E-26 T 11-10-2018 BED32_07820 580c8a4ffd12e598356c0ae1b32edf83 369 Gene3D G3DSA:3.30.1150.10 291 363 7.1E-35 T 11-10-2018 BED32_07820 580c8a4ffd12e598356c0ae1b32edf83 369 SUPERFAMILY SSF74653 283 369 7.26E-21 T 11-10-2018 BED32_07820 580c8a4ffd12e598356c0ae1b32edf83 369 Pfam PF06519 TolA C-terminal 274 366 1.3E-35 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 BED32_07820 580c8a4ffd12e598356c0ae1b32edf83 369 TIGRFAM TIGR02794 tolA_full: protein TolA 3 368 4.2E-96 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 456 7.7E-77 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 Pfam PF02321 Outer membrane efflux protein 276 454 1.1E-17 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 Pfam PF02321 Outer membrane efflux protein 64 248 2.1E-22 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 Gene3D G3DSA:2.20.200.10 101 345 4.2E-98 T 11-10-2018 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 SUPERFAMILY SSF56954 4 458 2.75E-87 T 11-10-2018 BED32_04735 f2625853fbb19d5b8a838db7789ddca8 468 Gene3D G3DSA:1.20.1600.10 55 456 4.2E-98 T 11-10-2018 BED32_13875 b32aff08d20c0ac8fae1a59b03713d49 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 110 1.2E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_13875 b32aff08d20c0ac8fae1a59b03713d49 222 Gene3D G3DSA:1.10.3720.10 1 216 6.3E-39 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13875 b32aff08d20c0ac8fae1a59b03713d49 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 215 2.1E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_13875 b32aff08d20c0ac8fae1a59b03713d49 222 SUPERFAMILY SSF161098 6 201 6.15E-28 T 11-10-2018 IPR035906 MetI-like superfamily BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Gene3D G3DSA:3.30.70.1680 1 61 1.3E-31 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 SUPERFAMILY SSF117130 1 54 3.66E-21 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 59 17.134 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 3.0E-20 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 Pfam PF02599 Global regulator protein family 1 52 2.5E-27 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BED32_04915 1df9e5c7b2bddd01abd93eeaeb7ebaa1 61 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 59 1.3E-31 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 BED32_14375 0b08651f32c3194fb57318045a525fba 121 ProSitePatterns PS00543 HlyD family secretion proteins signature. 86 108 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 BED32_14375 0b08651f32c3194fb57318045a525fba 121 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 86 101 1.9E-16 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_14375 0b08651f32c3194fb57318045a525fba 121 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 101 121 1.9E-16 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_14375 0b08651f32c3194fb57318045a525fba 121 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 43 66 1.9E-16 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_14375 0b08651f32c3194fb57318045a525fba 121 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 19 43 1.9E-16 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_14375 0b08651f32c3194fb57318045a525fba 121 Gene3D G3DSA:2.40.30.170 2 104 5.4E-12 T 11-10-2018 BED32_14375 0b08651f32c3194fb57318045a525fba 121 Pfam PF00529 HlyD membrane-fusion protein of T1SS 19 97 1.6E-7 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_14215 347242819bb0229c84fb323948ce54c2 585 SMART SM00490 263 345 2.9E-9 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_14215 347242819bb0229c84fb323948ce54c2 585 Gene3D G3DSA:3.40.50.300 1 168 9.0E-30 T 11-10-2018 BED32_14215 347242819bb0229c84fb323948ce54c2 585 Pfam PF04851 Type III restriction enzyme, res subunit 3 155 4.3E-25 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BED32_14215 347242819bb0229c84fb323948ce54c2 585 SUPERFAMILY SSF52540 50 358 3.3E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14215 347242819bb0229c84fb323948ce54c2 585 SMART SM00487 1 185 6.1E-18 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_14215 347242819bb0229c84fb323948ce54c2 585 Pfam PF00271 Helicase conserved C-terminal domain 244 343 2.3E-11 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_14215 347242819bb0229c84fb323948ce54c2 585 Gene3D G3DSA:3.40.50.300 186 378 3.5E-33 T 11-10-2018 BED32_14215 347242819bb0229c84fb323948ce54c2 585 SUPERFAMILY SSF57829 424 467 2.01E-7 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BED32_08700 de99bdb0cbd72c77a6775f2fb9579249 296 Pfam PF00483 Nucleotidyl transferase 5 272 3.9E-25 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_08700 de99bdb0cbd72c77a6775f2fb9579249 296 SUPERFAMILY SSF53448 1 276 1.17E-59 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08700 de99bdb0cbd72c77a6775f2fb9579249 296 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 272 1.2E-114 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BED32_08700 de99bdb0cbd72c77a6775f2fb9579249 296 Gene3D G3DSA:3.90.550.10 1 296 4.5E-85 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_06710 64139d24890a2d546f5bd79b211319c8 87 SUPERFAMILY SSF64210 17 75 1.06E-9 T 11-10-2018 IPR036626 Head-to-tail joining protein W superfamily GO:0019058 BED32_06710 64139d24890a2d546f5bd79b211319c8 87 Pfam PF02831 gpW 17 86 6.1E-26 T 11-10-2018 IPR004174 Head-to-tail joining protein W GO:0019058 BED32_06710 64139d24890a2d546f5bd79b211319c8 87 Gene3D G3DSA:3.30.1580.10 16 82 1.2E-5 T 11-10-2018 IPR036626 Head-to-tail joining protein W superfamily GO:0019058 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 Gene3D G3DSA:1.10.10.10 1 143 2.5E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 Pfam PF01047 MarR family 29 87 5.2E-17 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 ProSitePatterns PS01117 MarR-type HTH domain signature. 62 96 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 SUPERFAMILY SSF46785 4 139 1.27E-32 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 Hamap MF_01819 Transcriptional regulator SlyA [slyA]. 1 143 37.508 T 11-10-2018 IPR023071 Transcriptional regulator, SlyA BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 SMART SM00347 22 123 1.4E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 2.8E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 2.8E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 2.8E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_10960 acfffc2fd7a643fff82437e5c7efa241 143 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 2.8E-26 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 Pfam PF08212 Lipocalin-like domain 34 173 2.4E-43 T 11-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 69 78 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 120 128 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 135 146 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 33 47 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 103 117 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 50 66 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PRINTS PR01171 Bacterial lipocalin signature 162 172 5.3E-43 T 11-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 SUPERFAMILY SSF50814 10 174 9.98E-51 T 11-10-2018 IPR012674 Calycin BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 Gene3D G3DSA:2.40.128.20 6 174 4.3E-56 T 11-10-2018 IPR012674 Calycin BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 PIRSF PIRSF036893 1 178 4.8E-47 T 11-10-2018 IPR022271 Lipocalin, ApoD type BED32_19310 c7b88f815de1d0842a5e41f9400f61c2 179 ProSitePatterns PS00213 Lipocalin signature. 32 45 - T 11-10-2018 IPR022272 Lipocalin family conserved site BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 Pfam PF00294 pfkB family carbohydrate kinase 5 296 7.6E-76 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 PRINTS PR00990 Ribokinase signature 107 120 5.4E-38 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 PRINTS PR00990 Ribokinase signature 219 230 5.4E-38 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 PRINTS PR00990 Ribokinase signature 8 29 5.4E-38 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 PRINTS PR00990 Ribokinase signature 175 190 5.4E-38 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 PRINTS PR00990 Ribokinase signature 35 54 5.4E-38 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 7 301 1.3E-110 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 SUPERFAMILY SSF53613 5 304 8.26E-84 T 11-10-2018 IPR029056 Ribokinase-like BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 Gene3D G3DSA:3.40.1190.20 3 302 4.0E-102 T 11-10-2018 IPR029056 Ribokinase-like BED32_21360 7d1181d54e4be35b34cc561d4c709fa3 308 Hamap MF_01987 Ribokinase [rbsK]. 4 303 26.379 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 BED32_02310 c8d682e89449168186d8cf3980055d0c 99 SMART SM00530 14 69 5.8E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_02310 c8d682e89449168186d8cf3980055d0c 99 Gene3D G3DSA:1.10.260.40 4 86 7.9E-15 T 11-10-2018 BED32_02310 c8d682e89449168186d8cf3980055d0c 99 SUPERFAMILY SSF47413 6 66 8.85E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_02310 c8d682e89449168186d8cf3980055d0c 99 Pfam PF01381 Helix-turn-helix 19 66 3.9E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_05650 3e773a60485fbfc7797c6e6e5a22e7f7 254 Gene3D G3DSA:3.60.20.10 1 254 1.3E-96 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_05650 3e773a60485fbfc7797c6e6e5a22e7f7 254 SUPERFAMILY SSF56235 2 252 1.76E-50 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_05650 3e773a60485fbfc7797c6e6e5a22e7f7 254 Pfam PF13230 Glutamine amidotransferases class-II 1 252 1.0E-112 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 BED32_03975 f479278637213514e685b3664177e9a0 155 Pfam PF03748 Flagellar basal body-associated protein FliL 56 155 5.1E-11 T 11-10-2018 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 BED32_11870 2e9647f2a3eeb1504c5321b546a9ac4d 231 SMART SM01007 7 198 1.1E-67 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_11870 2e9647f2a3eeb1504c5321b546a9ac4d 231 Gene3D G3DSA:3.40.225.10 1 231 3.6E-61 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_11870 2e9647f2a3eeb1504c5321b546a9ac4d 231 SUPERFAMILY SSF53639 1 223 2.35E-68 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_11870 2e9647f2a3eeb1504c5321b546a9ac4d 231 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 8 196 9.8E-45 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_11870 2e9647f2a3eeb1504c5321b546a9ac4d 231 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 1 231 4.6E-128 T 11-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 65 1.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 SUPERFAMILY SSF46785 3 69 3.22E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 Pfam PF07702 UTRA domain 88 225 5.2E-28 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 39 55 6.8E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 25 39 6.8E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 SMART SM00866 86 225 2.0E-27 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 SMART SM00345 6 65 9.2E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 SUPERFAMILY SSF64288 53 232 6.75E-44 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 Gene3D G3DSA:1.10.10.10 2 68 9.9E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_05765 1143826d7fdb8e3305b144e9a9fcfc57 236 Gene3D G3DSA:3.40.1410.10 69 229 7.2E-37 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_14105 22e0d8b77b4c4190e1349a2d3612bafe 382 Gene3D G3DSA:1.10.3820.10 8 188 4.0E-38 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily BED32_14105 22e0d8b77b4c4190e1349a2d3612bafe 382 SUPERFAMILY SSF48695 13 186 1.08E-49 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily BED32_14105 22e0d8b77b4c4190e1349a2d3612bafe 382 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 182 7.5E-68 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal BED32_14105 22e0d8b77b4c4190e1349a2d3612bafe 382 PIRSF PIRSF000014 3 382 5.2E-144 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 1.2E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 1.2E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 1.2E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 1.2E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 1.2E-19 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 182 0.0025 T 11-10-2018 BED32_06425 2eb15d3858c53d1294350db846a49887 258 Gene3D G3DSA:3.40.50.720 1 244 2.3E-61 T 11-10-2018 BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 4.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 4.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 4.2E-5 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 Pfam PF00106 short chain dehydrogenase 3 190 9.4E-43 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_06425 2eb15d3858c53d1294350db846a49887 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_06425 2eb15d3858c53d1294350db846a49887 258 SUPERFAMILY SSF51735 3 254 6.16E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Pfam PF02080 TrkA-C domain 327 394 8.4E-13 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Pfam PF02080 TrkA-C domain 232 298 5.0E-14 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Gene3D G3DSA:3.30.70.1450 230 307 9.2E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 SUPERFAMILY SSF116726 232 290 5.36E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Pfam PF03600 Citrate transporter 431 603 8.7E-21 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 SUPERFAMILY SSF116726 322 395 2.35E-18 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 559 575 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Pfam PF03600 Citrate transporter 16 197 3.0E-38 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BED32_14630 69270ecbd6c6a226bee82e5d35857638 611 Gene3D G3DSA:3.30.70.1450 324 398 2.5E-17 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 69 123 4.1E-17 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 Hamap MF_00422 Protein translocase subunit SecE [secE]. 67 121 13.188 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 122 3.9E-20 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 Gene3D G3DSA:1.20.5.1030 66 123 4.9E-16 T 11-10-2018 IPR038379 SecE superfamily BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 71 99 - T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 PRINTS PR01650 Bacterial translocase SecE signature 65 85 1.8E-38 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 PRINTS PR01650 Bacterial translocase SecE signature 109 125 1.8E-38 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 PRINTS PR01650 Bacterial translocase SecE signature 89 109 1.8E-38 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BED32_19865 3cfb8b73f72ef042f4014c4fd43cbc79 127 PRINTS PR01650 Bacterial translocase SecE signature 44 65 1.8E-38 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 PIRSF PIRSF006294 3 539 2.8E-230 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 Gene3D G3DSA:3.90.228.20 234 524 2.7E-238 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 Gene3D G3DSA:3.40.449.10 22 233 2.7E-238 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 SUPERFAMILY SSF53795 228 539 1.97E-128 T 11-10-2018 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 Gene3D G3DSA:2.170.8.10 46 349 2.7E-238 T 11-10-2018 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 SUPERFAMILY SSF68923 8 226 4.71E-92 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 264 279 - T 11-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 7 539 2.4E-286 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 Pfam PF01293 Phosphoenolpyruvate carboxykinase 21 489 2.2E-211 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BED32_01560 810d44d760e0b362123c8d42f27ddada 539 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 15 537 55.269 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 BED32_18910 d0d9bac1be817786de5236d44201e126 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18910 d0d9bac1be817786de5236d44201e126 89 Gene3D G3DSA:1.10.287.10 2 89 7.4E-37 T 11-10-2018 BED32_18910 d0d9bac1be817786de5236d44201e126 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 88 1.0E-39 T 11-10-2018 BED32_18910 d0d9bac1be817786de5236d44201e126 89 SUPERFAMILY SSF47060 3 89 2.68E-34 T 11-10-2018 IPR009068 S15/NS1, RNA-binding BED32_18910 d0d9bac1be817786de5236d44201e126 89 SMART SM01387 8 88 6.4E-51 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18910 d0d9bac1be817786de5236d44201e126 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 2.1E-39 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_18910 d0d9bac1be817786de5236d44201e126 89 Pfam PF00312 Ribosomal protein S15 8 88 5.0E-37 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18910 d0d9bac1be817786de5236d44201e126 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.735 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_14145 207fdb22524747661a4e572f875096a5 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 26 40 7.7E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14145 207fdb22524747661a4e572f875096a5 247 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 56 7.7E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14145 207fdb22524747661a4e572f875096a5 247 Pfam PF07729 FCD domain 90 216 9.8E-22 T 11-10-2018 IPR011711 GntR, C-terminal BED32_14145 207fdb22524747661a4e572f875096a5 247 Gene3D G3DSA:1.20.120.530 80 227 4.0E-23 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_14145 207fdb22524747661a4e572f875096a5 247 SMART SM00345 7 66 2.8E-24 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14145 207fdb22524747661a4e572f875096a5 247 Gene3D G3DSA:1.10.10.10 1 70 1.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14145 207fdb22524747661a4e572f875096a5 247 SUPERFAMILY SSF46785 2 70 6.81E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14145 207fdb22524747661a4e572f875096a5 247 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 66 2.2E-23 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14145 207fdb22524747661a4e572f875096a5 247 SMART SM00895 90 217 7.5E-22 T 11-10-2018 IPR011711 GntR, C-terminal BED32_14145 207fdb22524747661a4e572f875096a5 247 SUPERFAMILY SSF48008 88 224 5.49E-26 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_12720 ac57ffecbb510920c1d6662f10d031be 189 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 184 25.991 T 11-10-2018 IPR022929 Putative manganese efflux pump MntP BED32_12720 ac57ffecbb510920c1d6662f10d031be 189 Pfam PF02659 Putative manganese efflux pump 31 181 7.5E-56 T 11-10-2018 IPR003810 Putative manganese efflux pump BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 251 262 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 SUPERFAMILY SSF143243 25 228 4.58E-60 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 SUPERFAMILY SSF56762 224 598 1.11E-121 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 15 598 72.249 T 11-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Gene3D G3DSA:1.10.645.20 213 598 1.6E-143 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 24 184 24.866 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 48 175 1.9E-45 T 11-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 328 598 4.2E-104 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 210 598 41.953 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 49 176 3.2E-42 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 104 159 1.0E-26 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 Gene3D G3DSA:3.30.460.80 4 156 9.7E-36 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14600 c1a516078d55ae594875d3f09e4b63fe 598 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 214 598 1.3E-175 T 11-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_19520 8d70d138bc000ac19e97bd3e19266c63 94 Pfam PF01206 Sulfurtransferase TusA 26 94 2.8E-19 T 11-10-2018 IPR001455 TusA-like domain BED32_19520 8d70d138bc000ac19e97bd3e19266c63 94 SUPERFAMILY SSF64307 8 94 8.11E-25 T 11-10-2018 IPR036868 TusA-like domain superfamily BED32_19520 8d70d138bc000ac19e97bd3e19266c63 94 Gene3D G3DSA:3.30.110.40 22 94 1.8E-30 T 11-10-2018 IPR036868 TusA-like domain superfamily BED32_19520 8d70d138bc000ac19e97bd3e19266c63 94 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 27 51 - T 11-10-2018 IPR001455 TusA-like domain BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Pfam PF01225 Mur ligase family, catalytic domain 25 93 2.2E-13 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Gene3D G3DSA:3.90.190.20 314 454 2.0E-46 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 SUPERFAMILY SSF53244 315 448 9.39E-37 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Gene3D G3DSA:3.40.1390.10 1 81 5.0E-27 T 11-10-2018 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Pfam PF08245 Mur ligase middle domain 107 295 2.4E-47 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 449 34.642 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 448 6.1E-141 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 SUPERFAMILY SSF53623 101 312 5.23E-59 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 SUPERFAMILY SSF63418 1 98 1.57E-28 T 11-10-2018 IPR035911 MurE/MurF, N-terminal BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Gene3D G3DSA:3.40.1190.10 82 313 6.9E-86 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17900 02b7c0e64a275e2ce51a74c617c11e80 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 393 1.6E-14 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SMART SM00267 426 597 1.8E-56 T 11-10-2018 IPR000160 GGDEF domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Gene3D G3DSA:3.30.450.20 145 285 8.5E-18 T 11-10-2018 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 PIRSF PIRSF005925 10 147 2.4E-4 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 PIRSF PIRSF005925 136 864 4.0E-248 T 11-10-2018 IPR012226 Diguanylate cyclase/phosphodiesterase BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Pfam PF00990 Diguanylate cyclase, GGDEF domain 437 592 1.8E-45 T 11-10-2018 IPR000160 GGDEF domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Pfam PF00563 EAL domain 613 847 8.3E-68 T 11-10-2018 IPR001633 EAL domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SMART SM00091 147 219 0.019 T 11-10-2018 IPR000014 PAS domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SMART SM00091 18 88 1.2E-4 T 11-10-2018 IPR000014 PAS domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 433 594 4.8E-39 T 11-10-2018 IPR000160 GGDEF domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SUPERFAMILY SSF55073 442 598 4.94E-47 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Pfam PF13185 GAF domain 282 425 4.1E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SUPERFAMILY SSF141868 612 860 2.09E-79 T 11-10-2018 IPR035919 EAL domain superfamily BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SMART SM00052 607 853 2.1E-101 T 11-10-2018 IPR001633 EAL domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Gene3D G3DSA:3.20.20.450 610 862 7.8E-89 T 11-10-2018 IPR035919 EAL domain superfamily BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SUPERFAMILY SSF55785 171 262 2.24E-13 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SMART SM00065 266 434 9.3E-7 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Gene3D G3DSA:3.30.70.270 433 609 3.3E-55 T 11-10-2018 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SUPERFAMILY SSF55785 31 133 2.39E-22 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Gene3D G3DSA:3.30.450.40 286 432 4.8E-18 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Gene3D G3DSA:3.30.450.20 7 144 5.6E-21 T 11-10-2018 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 148 268 3.3E-10 T 11-10-2018 IPR000014 PAS domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 25 141 2.8E-15 T 11-10-2018 IPR000014 PAS domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Pfam PF08447 PAS fold 42 129 1.6E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 Pfam PF13426 PAS domain 159 262 6.4E-9 T 11-10-2018 IPR000014 PAS domain BED32_12290 2347fc5dac0b4a190ae5d0a28c367b60 864 SUPERFAMILY SSF55781 284 437 2.12E-20 T 11-10-2018 BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 Gene3D G3DSA:1.10.10.10 2 110 3.6E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 SUPERFAMILY SSF53850 121 593 2.17E-63 T 11-10-2018 BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 Gene3D G3DSA:3.40.190.10 117 347 4.3E-36 T 11-10-2018 BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 SUPERFAMILY SSF46785 6 87 1.34E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 117 6.4E-36 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain BED32_13105 2ca5fabd4b99ae19dbc1b2719fd5ca7c 596 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 308 3.1E-22 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_03010 601da096bb9a82c1c42f924964de71d5 375 Gene3D G3DSA:3.40.50.300 58 202 4.1E-19 T 11-10-2018 BED32_03010 601da096bb9a82c1c42f924964de71d5 375 Hamap MF_01919 Cell division protein ZapE [zapE]. 4 375 52.741 T 11-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 BED32_03010 601da096bb9a82c1c42f924964de71d5 375 Pfam PF03969 AFG1-like ATPase 6 370 2.3E-144 T 11-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 BED32_03010 601da096bb9a82c1c42f924964de71d5 375 SUPERFAMILY SSF52540 66 209 1.38E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Gene3D G3DSA:3.10.20.310 30 110 5.4E-31 T 11-10-2018 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Gene3D G3DSA:3.10.20.310 111 198 2.9E-30 T 11-10-2018 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Gene3D G3DSA:3.10.20.310 199 275 2.6E-25 T 11-10-2018 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Pfam PF07244 Surface antigen variable number repeat 199 261 3.4E-7 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Pfam PF17243 POTRA domain TamA domain 1 35 109 2.3E-20 T 11-10-2018 IPR035243 TamA, POTRA domain 1 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Pfam PF01103 Surface antigen 363 584 2.2E-29 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 BED32_19080 72309aed260c7a10e3fbec4f33b328a6 587 Gene3D G3DSA:2.40.160.50 276 587 2.8E-122 T 11-10-2018 BED32_15775 605b2b90121782766df7d99c8da964a2 239 Gene3D G3DSA:3.40.50.2300 2 140 2.4E-36 T 11-10-2018 BED32_15775 605b2b90121782766df7d99c8da964a2 239 SMART SM00862 155 231 8.3E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_15775 605b2b90121782766df7d99c8da964a2 239 SUPERFAMILY SSF52172 12 189 3.81E-40 T 11-10-2018 IPR011006 CheY-like superfamily BED32_15775 605b2b90121782766df7d99c8da964a2 239 Pfam PF00072 Response regulator receiver domain 14 122 1.7E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15775 605b2b90121782766df7d99c8da964a2 239 Gene3D G3DSA:1.10.10.10 141 238 2.9E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15775 605b2b90121782766df7d99c8da964a2 239 SMART SM00448 12 122 2.5E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15775 605b2b90121782766df7d99c8da964a2 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 230 3.3E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_04360 def7780d18f643eb06029901e00b55e6 374 SUPERFAMILY SSF55909 17 373 2.14E-137 T 11-10-2018 BED32_04360 def7780d18f643eb06029901e00b55e6 374 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 19 373 2.0E-172 T 11-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 BED32_04360 def7780d18f643eb06029901e00b55e6 374 Hamap MF_01841 Agmatine deiminase [aguA]. 18 373 58.922 T 11-10-2018 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 BED32_04360 def7780d18f643eb06029901e00b55e6 374 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 27 372 7.4E-120 T 11-10-2018 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 BED32_04360 def7780d18f643eb06029901e00b55e6 374 Gene3D G3DSA:3.75.10.10 15 374 1.0E-136 T 11-10-2018 BED32_15850 661e443dfe48b2dbd273621943b21d65 350 Pfam PF03864 Phage major capsid protein E 16 346 1.2E-20 T 11-10-2018 IPR005564 Major capsid protein GpE BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 499 4.4E-37 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Gene3D G3DSA:1.10.238.260 280 392 3.4E-33 T 11-10-2018 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 497 4.4E-252 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Gene3D G3DSA:3.20.20.70 1 277 3.9E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Gene3D G3DSA:3.30.160.270 393 501 7.6E-12 T 11-10-2018 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 509 43.382 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 SUPERFAMILY SSF51569 1 291 1.21E-100 T 11-10-2018 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 Pfam PF00682 HMGL-like 4 273 2.7E-106 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 SUPERFAMILY SSF110921 391 499 7.72E-26 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_17960 3f2a390c3dceeb28b1803be95a41ea32 520 SMART SM00917 369 500 6.2E-39 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 BED32_02145 f09a257d86e79d329b352a5b30387668 1619 SUPERFAMILY SSF51126 46 323 9.1E-50 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 630 789 1.7E-17 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 1214 1381 8.8E-25 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 1039 1155 2.3E-12 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 402 466 6.5E-8 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 810 894 1.4E-5 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF13332 Haemagluttinin repeat 481 548 1.1E-4 T 11-10-2018 IPR025157 Hemagglutinin repeat BED32_02145 f09a257d86e79d329b352a5b30387668 1619 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 66 158 1.8E-16 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Gene3D G3DSA:2.160.20.10 32 270 1.6E-75 T 11-10-2018 IPR012334 Pectin lyase fold BED32_02145 f09a257d86e79d329b352a5b30387668 1619 Pfam PF05860 haemagglutination activity domain 44 167 1.3E-29 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_02145 f09a257d86e79d329b352a5b30387668 1619 SMART SM00912 48 168 9.6E-46 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_16190 3f3a4ae92de7b7f3eea609ecfb00fc47 202 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 85 122 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BED32_16190 3f3a4ae92de7b7f3eea609ecfb00fc47 202 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 40 181 47.598 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 BED32_16190 3f3a4ae92de7b7f3eea609ecfb00fc47 202 SUPERFAMILY SSF53927 32 185 6.19E-56 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_16190 3f3a4ae92de7b7f3eea609ecfb00fc47 202 Pfam PF14437 MafB19-like deaminase 36 179 1.1E-29 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 BED32_16190 3f3a4ae92de7b7f3eea609ecfb00fc47 202 Gene3D G3DSA:3.40.140.10 31 195 8.2E-64 T 11-10-2018 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 SUPERFAMILY SSF55136 122 287 5.93E-56 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 Gene3D G3DSA:1.10.10.60 3 55 1.2E-26 T 11-10-2018 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 SUPERFAMILY SSF46689 57 107 5.82E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 88 104 4.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 73 88 4.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 Pfam PF06445 GyrI-like small molecule binding domain 127 287 4.4E-24 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 Gene3D G3DSA:1.10.10.60 56 121 1.4E-20 T 11-10-2018 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 55 100 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 SMART SM00871 126 287 5.0E-21 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 Gene3D G3DSA:3.20.80.10 122 288 4.5E-49 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 SMART SM00342 21 104 3.0E-31 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 SUPERFAMILY SSF46689 6 55 6.72E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18250 0213c45423e7c9a6d2d0f69c467e24b9 288 Pfam PF12833 Helix-turn-helix domain 27 105 1.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 Gene3D G3DSA:1.10.8.10 1 56 1.7E-25 T 11-10-2018 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 284 1.3E-115 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 SUPERFAMILY SSF46934 4 55 4.01E-18 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 Gene3D G3DSA:3.30.479.20 57 143 3.9E-30 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 79.818 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 Gene3D G3DSA:1.10.286.20 189 228 5.6E-23 T 11-10-2018 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 SUPERFAMILY SSF54713 144 283 3.92E-53 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 Pfam PF00889 Elongation factor TS 73 265 2.4E-67 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 BED32_16885 14b3b02fd9dce48846117cc84eb12207 285 SUPERFAMILY SSF54713 56 141 2.83E-21 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 Gene3D G3DSA:3.30.700.10 22 137 2.5E-33 T 11-10-2018 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 3.4E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 SUPERFAMILY SSF54523 35 137 1.36E-32 T 11-10-2018 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 Pfam PF08334 Type II secretion system (T2SS), protein G 32 137 4.4E-31 T 11-10-2018 IPR013545 Type II secretion system protein G BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 7 137 4.1E-52 T 11-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 9.3E-22 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 9.3E-22 T 11-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 BED32_17200 d2c1e9d6c14880ea82d543a67a16f5d7 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 27 6.5E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_07655 b8d90dfebf9b5a950d14647c4423d76f 562 Pfam PF03814 Potassium-transporting ATPase A subunit 12 556 3.9E-241 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BED32_07655 b8d90dfebf9b5a950d14647c4423d76f 562 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 1 557 2.4E-262 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BED32_07655 b8d90dfebf9b5a950d14647c4423d76f 562 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 558 35.343 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BED32_07655 b8d90dfebf9b5a950d14647c4423d76f 562 PIRSF PIRSF001294 1 560 2.2E-239 T 11-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 BED32_00765 353c1367d6bfe2d6a4d9eabc6f23c85a 332 Pfam PF02653 Branched-chain amino acid transport system / permease component 51 315 2.2E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 70 3.3E-23 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Gene3D G3DSA:1.10.166.10 1 71 9.3E-33 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 273 57.541 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 176 210 7.4E-12 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 SUPERFAMILY SSF51161 1 257 6.1E-78 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Gene3D G3DSA:2.160.10.10 88 258 1.6E-57 T 11-10-2018 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 274 2.3E-159 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 BED32_16905 39f2506ff7cba2fea17aafabdb2c6fcc 275 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 167 5.6E-4 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 SUPERFAMILY SSF52172 6 181 1.57E-43 T 11-10-2018 IPR011006 CheY-like superfamily BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 SMART SM00448 7 118 3.6E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Gene3D G3DSA:1.10.8.60 308 386 4.0E-22 T 11-10-2018 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 SMART SM00382 157 300 3.9E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Pfam PF00158 Sigma-54 interaction domain 137 303 1.9E-71 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 SUPERFAMILY SSF52540 136 381 1.83E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Gene3D G3DSA:3.40.50.300 133 307 7.8E-63 T 11-10-2018 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 SUPERFAMILY SSF46689 388 438 1.08E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Gene3D G3DSA:1.10.10.60 387 441 5.8E-10 T 11-10-2018 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 350 359 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Pfam PF00072 Response regulator receiver domain 10 118 1.1E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_16160 34b95ba8de7bac08f116b47c205eb40c 445 Gene3D G3DSA:3.40.50.2300 5 132 2.3E-37 T 11-10-2018 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 Gene3D G3DSA:2.40.50.140 15 154 6.3E-44 T 11-10-2018 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 Gene3D G3DSA:3.30.930.10 155 499 6.8E-136 T 11-10-2018 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 SUPERFAMILY SSF55681 162 502 3.25E-124 T 11-10-2018 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 15 504 3.8E-230 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 199 209 1.5E-39 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 215 231 1.5E-39 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 262 279 1.5E-39 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 244 257 1.5E-39 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PRINTS PR00982 Lysyl-tRNA synthetase signature 386 402 1.5E-39 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 Pfam PF01336 OB-fold nucleic acid binding domain 68 146 2.5E-15 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 PIRSF PIRSF039101 1 505 2.0E-200 T 11-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 SUPERFAMILY SSF50249 13 155 9.3E-48 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_17395 125fb294b315367ae37ce120b5a10b51 505 Pfam PF00152 tRNA synthetases class II (D, K and N) 162 501 1.0E-83 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_17395 125fb294b315367ae37ce120b5a10b51 505 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 505 45.3 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 Gene3D G3DSA:3.40.50.300 343 587 4.4E-67 T 11-10-2018 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 SMART SM00382 375 560 8.0E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13760 c2572fdee504bc04e962741378e70bc9 588 SUPERFAMILY SSF52540 365 582 2.58E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13760 c2572fdee504bc04e962741378e70bc9 588 Pfam PF00005 ABC transporter 369 514 3.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 Gene3D G3DSA:1.20.1560.10 2 334 1.0E-49 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 Pfam PF00664 ABC transporter transmembrane region 26 291 1.4E-40 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 21 556 6.2E-202 T 11-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 BED32_13760 c2572fdee504bc04e962741378e70bc9 588 SUPERFAMILY SSF90123 11 331 1.57E-54 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:2.40.160.50 426 794 1.8E-143 T 11-10-2018 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:3.10.20.310 347 425 8.8E-26 T 11-10-2018 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:3.10.20.310 175 264 2.0E-23 T 11-10-2018 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:3.10.20.310 265 346 1.2E-16 T 11-10-2018 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Pfam PF01103 Surface antigen 448 794 2.8E-101 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 PIRSF PIRSF006076 1 794 1.2E-255 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Pfam PF07244 Surface antigen variable number repeat 92 172 1.8E-11 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Pfam PF07244 Surface antigen variable number repeat 266 344 7.6E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Pfam PF07244 Surface antigen variable number repeat 176 263 2.6E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Pfam PF07244 Surface antigen variable number repeat 348 421 7.4E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 794 3.5E-284 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 794 26.103 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:3.10.20.310 19 91 2.1E-20 T 11-10-2018 BED32_16850 b3307693804f945ea6642bb82e41eaa4 794 Gene3D G3DSA:3.10.20.310 92 174 3.7E-16 T 11-10-2018 BED32_03030 32e9e481f62c5c87046ca43c472a97a6 171 PIRSF PIRSF005276 3 171 5.4E-60 T 11-10-2018 IPR007481 Stringent starvation protein B BED32_03030 32e9e481f62c5c87046ca43c472a97a6 171 Gene3D G3DSA:2.30.30.220 3 132 5.3E-52 T 11-10-2018 IPR036760 SspB-like superfamily BED32_03030 32e9e481f62c5c87046ca43c472a97a6 171 Pfam PF04386 Stringent starvation protein B 9 171 2.9E-41 T 11-10-2018 IPR007481 Stringent starvation protein B BED32_03030 32e9e481f62c5c87046ca43c472a97a6 171 SUPERFAMILY SSF101738 4 113 6.67E-48 T 11-10-2018 IPR036760 SspB-like superfamily BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 1 100 1.8E-20 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 Pfam PF01872 RibD C-terminal domain 148 361 1.6E-59 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 SUPERFAMILY SSF53597 145 363 2.52E-58 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 PIRSF PIRSF006769 1 368 4.2E-130 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 Gene3D G3DSA:3.40.430.10 137 368 7.8E-77 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 SUPERFAMILY SSF53927 4 146 3.35E-49 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 147 365 2.2E-74 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 Gene3D G3DSA:3.40.140.10 1 136 1.1E-46 T 11-10-2018 BED32_05955 9c45fdb68e16d3348a8dcc127d0adf52 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 8 362 9.4E-145 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 351 508 1.1E-53 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 318 340 - T 11-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 SUPERFAMILY SSF58104 260 541 4.45E-73 T 11-10-2018 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 SMART SM00304 240 292 7.3E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 Pfam PF00672 HAMP domain 242 287 1.5E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 468 497 1.9E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 30 55 1.9E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 314 343 1.9E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 391 418 1.9E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 420 449 1.9E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 SMART SM00283 293 540 1.6E-89 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 Gene3D G3DSA:1.10.287.950 240 542 2.9E-92 T 11-10-2018 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 Pfam PF02203 Tar ligand binding domain homologue 27 193 2.7E-27 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_09475 408050519c6d9b0ed6b8cd50fad6d223 579 SUPERFAMILY SSF47170 56 190 2.09E-13 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BED32_10160 6dbfc54cc4920798171f85fcc4b1c312 191 Gene3D G3DSA:3.40.50.850 1 189 8.6E-52 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_10160 6dbfc54cc4920798171f85fcc4b1c312 191 SUPERFAMILY SSF52499 3 189 2.09E-47 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_10160 6dbfc54cc4920798171f85fcc4b1c312 191 Pfam PF00857 Isochorismatase family 8 181 6.2E-38 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 BED32_18470 55c8815830da0bfe91b21c81b087f6cd 288 Gene3D G3DSA:2.60.120.620 83 287 5.0E-27 T 11-10-2018 BED32_18470 55c8815830da0bfe91b21c81b087f6cd 288 Pfam PF10014 2OG-Fe dioxygenase 93 282 4.8E-30 T 11-10-2018 IPR018724 2OG-Fe dioxygenase BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 Gene3D G3DSA:2.60.120.10 92 187 2.0E-28 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 SMART SM00530 11 66 2.9E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 Pfam PF07883 Cupin domain 111 179 7.4E-13 T 11-10-2018 IPR013096 Cupin 2, conserved barrel BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 SUPERFAMILY SSF51182 51 184 3.99E-29 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 Gene3D G3DSA:1.10.260.40 1 77 2.5E-22 T 11-10-2018 BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 SUPERFAMILY SSF47413 3 70 4.83E-19 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11900 65bd56feaba89dad94bd9a38bad22bbf 188 Pfam PF01381 Helix-turn-helix 12 64 1.7E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.2E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.2E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.2E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.2E-39 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 Gene3D G3DSA:3.40.640.10 45 316 1.1E-162 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 SUPERFAMILY SSF53383 1 396 2.98E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 Gene3D G3DSA:3.90.1150.10 11 392 1.1E-162 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BED32_13560 9ee58606c6927e21590c9a8fce8ac2a4 397 Pfam PF00155 Aminotransferase class I and II 27 393 2.7E-91 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_02845 79550f7e3b1b30d5843970b6b3d1c8b7 92 Pfam PF05015 RelE-like toxin of type II toxin-antitoxin system HigB 3 92 2.4E-23 T 11-10-2018 IPR007711 Toxin HigB-1 BED32_02845 79550f7e3b1b30d5843970b6b3d1c8b7 92 Gene3D G3DSA:3.30.2310.20 1 92 2.0E-38 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_02845 79550f7e3b1b30d5843970b6b3d1c8b7 92 SUPERFAMILY SSF143011 1 92 2.49E-16 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_07585 25d48152841f4398176b88e388347995 891 SMART SM01081 36 197 1.3E-103 T 11-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BED32_07585 25d48152841f4398176b88e388347995 891 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 338 769 4.1E-111 T 11-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BED32_07585 25d48152841f4398176b88e388347995 891 Pfam PF03173 Putative carbohydrate binding domain 38 196 5.0E-70 T 11-10-2018 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BED32_07585 25d48152841f4398176b88e388347995 891 Gene3D G3DSA:3.30.379.10 209 335 3.6E-26 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BED32_07585 25d48152841f4398176b88e388347995 891 Gene3D G3DSA:3.20.20.80 336 823 4.3E-166 T 11-10-2018 BED32_07585 25d48152841f4398176b88e388347995 891 SUPERFAMILY SSF55545 206 337 3.01E-28 T 11-10-2018 IPR029018 Beta-hexosaminidase-like, domain 2 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 532 545 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 438 455 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 751 768 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 361 382 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 505 523 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 733 749 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 332 349 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 PRINTS PR00738 Glycosyl hydrolase family 20 signature 298 318 9.7E-44 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 BED32_07585 25d48152841f4398176b88e388347995 891 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 216 334 1.9E-15 T 11-10-2018 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal BED32_07585 25d48152841f4398176b88e388347995 891 SUPERFAMILY SSF51445 338 778 9.83E-140 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_07585 25d48152841f4398176b88e388347995 891 SUPERFAMILY SSF81296 786 889 1.08E-37 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_07585 25d48152841f4398176b88e388347995 891 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 810 885 1.8E-31 T 11-10-2018 IPR004867 Chitobiase C-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BED32_07585 25d48152841f4398176b88e388347995 891 SUPERFAMILY SSF49384 29 199 7.95E-69 T 11-10-2018 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily GO:0030246 BED32_07585 25d48152841f4398176b88e388347995 891 Gene3D G3DSA:2.60.40.10 824 889 1.5E-26 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_07585 25d48152841f4398176b88e388347995 891 Gene3D G3DSA:2.60.40.290 28 169 2.0E-62 T 11-10-2018 IPR012291 CBM2, carbohydrate-binding domain superfamily GO:0004553|GO:0030247 BED32_08045 75b14ac655e44c28473c701a9cba543b 396 Pfam PF12698 ABC-2 family transporter protein 49 388 2.5E-44 T 11-10-2018 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 1.3E-131 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SMART SM00322 301 358 0.19 T 11-10-2018 IPR004087 K Homology domain GO:0003676 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SMART SM00322 230 293 17.0 T 11-10-2018 IPR004087 K Homology domain GO:0003676 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:2.40.50.140 135 198 4.8E-20 T 11-10-2018 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SMART SM00316 133 200 3.9E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:3.30.1480.10 1 129 9.1E-47 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 441 489 4.2E-18 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 5.9E-21 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF54814 201 278 2.68E-29 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF54814 279 342 6.54E-15 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF50249 133 199 2.11E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF47794 429 492 1.88E-17 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Pfam PF13184 NusA-like KH domain 230 297 8.1E-28 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:1.10.150.20 431 490 2.2E-25 T 11-10-2018 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:3.30.300.20 278 346 1.1E-23 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 1.7E-9 T 11-10-2018 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 410 29.413 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF69705 1 126 2.62E-42 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:1.10.150.20 352 421 3.0E-31 T 11-10-2018 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Gene3D G3DSA:3.30.300.20 199 277 5.1E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 SUPERFAMILY SSF47794 355 415 1.52E-16 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 BED32_18930 7f651ae64bae80d437ed08cb9708e7eb 495 Pfam PF08529 NusA N-terminal domain 4 123 3.0E-37 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:3.30.565.10 350 533 1.9E-52 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09530 3f455206d0d79a4175fc837525a884bf 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 531 5.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 512 5.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 453 5.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 488 5.4E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SMART SM01231 286 349 2.7E-20 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SUPERFAMILY SSF47226 5 124 4.18E-29 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SUPERFAMILY SSF55874 352 532 2.1E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Pfam PF01627 Hpt domain 7 102 5.1E-19 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:1.20.120.160 1 143 3.1E-43 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Pfam PF01584 CheW-like domain 539 665 2.3E-24 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Pfam PF09078 CheY binding 165 227 2.9E-25 T 11-10-2018 IPR015162 CheY binding BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:3.30.70.400 159 232 4.0E-27 T 11-10-2018 IPR035891 CheY-binding domain of CheA BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SUPERFAMILY SSF47384 287 350 4.32E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:2.30.30.40 534 662 7.0E-38 T 11-10-2018 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SMART SM00073 3 100 4.2E-29 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 287 349 1.0E-16 T 11-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:1.10.287.560 286 349 1.3E-16 T 11-10-2018 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily GO:0000155|GO:0006935 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SUPERFAMILY SSF50341 533 665 1.44E-30 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SMART SM00260 526 666 7.3E-42 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SUPERFAMILY SSF55052 164 227 4.18E-20 T 11-10-2018 IPR035891 CheY-binding domain of CheA BED32_09530 3f455206d0d79a4175fc837525a884bf 682 SMART SM00387 394 534 1.1E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 397 533 7.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09530 3f455206d0d79a4175fc837525a884bf 682 Gene3D G3DSA:2.40.50.180 557 621 7.0E-38 T 11-10-2018 BED32_10580 97095a7999a7189fec43d2222eb5f92b 291 Gene3D G3DSA:1.10.3470.10 42 272 5.4E-9 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10580 97095a7999a7189fec43d2222eb5f92b 291 SUPERFAMILY SSF81345 5 266 2.62E-45 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10580 97095a7999a7189fec43d2222eb5f92b 291 Pfam PF00950 ABC 3 transport family 14 268 7.8E-97 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 BED32_08300 296e747bac2a313166fee9feb923f9fb 258 Hamap MF_00560 Trans-aconitate 2-methyltransferase [tam]. 2 257 43.574 T 11-10-2018 IPR023506 Trans-aconitate 2-methyltransferase GO:0030798 BED32_08300 296e747bac2a313166fee9feb923f9fb 258 Pfam PF13649 Methyltransferase domain 36 121 5.0E-13 T 11-10-2018 BED32_08300 296e747bac2a313166fee9feb923f9fb 258 Gene3D G3DSA:1.10.150.290 132 237 3.4E-87 T 11-10-2018 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 BED32_08300 296e747bac2a313166fee9feb923f9fb 258 Gene3D G3DSA:3.40.50.150 9 254 3.4E-87 T 11-10-2018 BED32_08300 296e747bac2a313166fee9feb923f9fb 258 SUPERFAMILY SSF53335 4 210 3.19E-31 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 236 1.6E-14 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Gene3D G3DSA:1.10.3120.10 116 417 3.0E-111 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 2.7E-44 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Gene3D G3DSA:3.30.70.1050 1 115 1.9E-43 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 PIRSF PIRSF003095 1 434 7.5E-130 T 11-10-2018 IPR005215 Trigger factor GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 TIGRFAM TIGR00115 tig: trigger factor 13 412 1.1E-143 T 11-10-2018 IPR005215 Trigger factor GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 412 1.5E-40 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 SUPERFAMILY SSF54534 96 240 1.51E-37 T 11-10-2018 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Gene3D G3DSA:3.10.50.40 150 246 3.0E-111 T 11-10-2018 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 SUPERFAMILY SSF109998 248 429 1.57E-48 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 Hamap MF_00303 Trigger factor [tig]. 1 418 21.948 T 11-10-2018 IPR005215 Trigger factor GO:0015031 BED32_06075 d942ffa26a040ac06a9e2591ea832c06 434 SUPERFAMILY SSF102735 1 131 1.03E-41 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 77 93 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 141 158 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 166 177 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 98 111 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 112 132 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 PRINTS PR00732 Glycosyl hydrolase family 4 signature 192 204 1.1E-44 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 141 171 - T 11-10-2018 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 196 410 1.2E-49 T 11-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 SUPERFAMILY SSF56327 172 435 1.21E-90 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 Pfam PF02056 Family 4 glycosyl hydrolase 5 186 1.6E-54 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 SUPERFAMILY SSF51735 2 169 1.04E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 Gene3D G3DSA:3.90.110.10 170 437 1.3E-98 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_01690 2940e1dcf08386a64e5e8e5259b3d169 437 Gene3D G3DSA:3.40.50.720 1 169 3.0E-60 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 Hamap MF_01269 Shikimate kinase 2 [aroL]. 1 173 43.214 T 11-10-2018 IPR027544 Shikimate kinase 2 GO:0004765|GO:0009073 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 PRINTS PR01100 Shikimate kinase family signature 5 20 1.7E-22 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 PRINTS PR01100 Shikimate kinase family signature 29 42 1.7E-22 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 PRINTS PR01100 Shikimate kinase family signature 57 65 1.7E-22 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 PRINTS PR01100 Shikimate kinase family signature 95 112 1.7E-22 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 PRINTS PR01100 Shikimate kinase family signature 74 83 1.7E-22 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 Hamap MF_00109 Shikimate kinase [aroK]. 2 169 25.951 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 Pfam PF01202 Shikimate kinase 11 167 4.9E-49 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 Gene3D G3DSA:3.40.50.300 1 170 6.3E-54 T 11-10-2018 BED32_05825 e51c96469fae79aad9ce599856ba8083 174 SUPERFAMILY SSF52540 3 168 1.59E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05825 e51c96469fae79aad9ce599856ba8083 174 ProSitePatterns PS01128 Shikimate kinase signature. 58 82 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 3 223 36.292 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 Pfam PF13394 4Fe-4S single cluster domain 24 128 5.6E-14 T 11-10-2018 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 SUPERFAMILY SSF102114 24 118 2.49E-6 T 11-10-2018 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 Pfam PF04055 Radical SAM superfamily 26 124 3.0E-8 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 9 223 2.5E-110 T 11-10-2018 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 Gene3D G3DSA:3.20.20.70 2 223 9.0E-57 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_04530 d12dfb138d28da266ed34a9a7b120bf7 223 PIRSF PIRSF000370 1 223 3.3E-70 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 SUPERFAMILY SSF56014 632 808 1.7E-45 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 6 800 0.0 T 11-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 285 4.5E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 SUPERFAMILY SSF55124 501 626 1.13E-32 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 632 756 1.2E-14 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Gene3D G3DSA:3.50.50.60 8 283 1.3E-82 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00397 Sirohaem Fe-binding site signature 678 696 1.0E-5 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00397 Sirohaem Fe-binding site signature 635 653 1.0E-5 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 105 114 4.2E-11 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 172 4.2E-11 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 276 283 4.2E-11 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 235 249 4.2E-11 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PIRSF PIRSF037149 1 834 0.0 T 11-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.3E-14 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 250 6.3E-14 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 6.3E-14 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 283 6.3E-14 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 559 621 8.2E-12 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 SUPERFAMILY SSF51905 2 189 3.54E-38 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Gene3D G3DSA:3.30.413.10 631 783 3.0E-30 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 678 694 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 SUPERFAMILY SSF51905 144 310 5.38E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 423 470 5.5E-15 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Gene3D G3DSA:1.10.10.1100 422 476 2.8E-12 T 11-10-2018 BED32_01670 76e3e14e3dc8d73b090a4ed53e7f9cab 848 Gene3D G3DSA:3.50.50.60 110 246 1.3E-82 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_21030 f96e35791791a372453e227258dc6abc 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 6.6E-42 T 11-10-2018 IPR013527 YicC-like, N-terminal BED32_21030 f96e35791791a372453e227258dc6abc 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.3E-128 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 BED32_21030 f96e35791791a372453e227258dc6abc 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.7E-34 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 BED32_07715 77da284ef8e250867b974174d5332c3a 245 Pfam PF03746 LamB/YcsF family 3 235 8.9E-94 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BED32_07715 77da284ef8e250867b974174d5332c3a 245 Gene3D G3DSA:3.20.20.370 1 245 5.1E-101 T 11-10-2018 BED32_07715 77da284ef8e250867b974174d5332c3a 245 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 240 43.009 T 11-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BED32_07715 77da284ef8e250867b974174d5332c3a 245 SUPERFAMILY SSF88713 1 243 6.0E-93 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 Gene3D G3DSA:1.10.260.40 1 61 3.0E-21 T 11-10-2018 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 SUPERFAMILY SSF53822 63 314 1.63E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_02855 94420af91478c39d5221c5c7d1711a71 315 Gene3D G3DSA:3.40.50.2300 163 279 9.8E-69 T 11-10-2018 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 Gene3D G3DSA:3.40.50.2300 68 302 9.8E-69 T 11-10-2018 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 SUPERFAMILY SSF47413 3 60 1.24E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 16 26 6.2E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 6 16 6.2E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 4.5E-20 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 Pfam PF13377 Periplasmic binding protein-like domain 169 312 7.5E-17 T 11-10-2018 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 SMART SM00354 4 74 9.9E-33 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 11-10-2018 BED32_02855 94420af91478c39d5221c5c7d1711a71 315 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 313 3.4E-156 T 11-10-2018 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 Gene3D G3DSA:3.20.10.10 137 288 2.9E-111 T 11-10-2018 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 9 306 2.9E-143 T 11-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 Pfam PF01063 Amino-transferase class IV 35 267 4.3E-48 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 Gene3D G3DSA:3.30.470.10 9 126 2.9E-111 T 11-10-2018 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 SUPERFAMILY SSF56752 6 307 6.28E-106 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BED32_00800 5bf01ba9cc4648c119f1b48354b28f02 308 ProSitePatterns PS00770 Aminotransferases class-IV signature. 193 222 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 Pfam PF00005 ABC transporter 24 187 7.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 Gene3D G3DSA:3.40.50.300 2 329 1.6E-75 T 11-10-2018 BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 SMART SM00382 32 235 3.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 SUPERFAMILY SSF52540 3 265 3.73E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 4.3E-16 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_11045 c904d425bed7ab81ec90dd8ce3b80170 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 4.7E-20 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_02905 3e749dea63438e254f4576e2d470fae0 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 14 21 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BED32_02905 3e749dea63438e254f4576e2d470fae0 90 SUPERFAMILY SSF55594 4 90 4.32E-24 T 11-10-2018 IPR035895 HPr-like superfamily BED32_02905 3e749dea63438e254f4576e2d470fae0 90 PRINTS PR00107 Phosphocarrier protein signature 40 55 4.0E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_02905 3e749dea63438e254f4576e2d470fae0 90 PRINTS PR00107 Phosphocarrier protein signature 14 30 4.0E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_02905 3e749dea63438e254f4576e2d470fae0 90 PRINTS PR00107 Phosphocarrier protein signature 55 72 4.0E-10 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_02905 3e749dea63438e254f4576e2d470fae0 90 Gene3D G3DSA:3.30.1340.10 1 85 4.3E-32 T 11-10-2018 IPR035895 HPr-like superfamily BED32_02905 3e749dea63438e254f4576e2d470fae0 90 Pfam PF00381 PTS HPr component phosphorylation site 4 84 6.4E-23 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_02905 3e749dea63438e254f4576e2d470fae0 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 84 9.1E-22 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 3.7E-50 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Gene3D G3DSA:3.30.160.110 113 148 4.1E-20 T 11-10-2018 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Pfam PF13241 Putative NAD(P)-binding 6 115 4.5E-25 T 11-10-2018 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 SUPERFAMILY SSF53790 215 456 2.36E-79 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 SUPERFAMILY SSF75615 114 202 5.75E-27 T 11-10-2018 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 448 5.0E-93 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Gene3D G3DSA:3.30.950.10 332 467 1.7E-47 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Gene3D G3DSA:1.10.8.210 149 213 3.9E-27 T 11-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 51.489 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Pfam PF14824 Sirohaem biosynthesis protein central 121 146 7.8E-9 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 7.0E-20 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 207 2.1E-71 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 PIRSF PIRSF036426 1 464 6.6E-204 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 SUPERFAMILY SSF51735 1 112 8.18E-26 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Gene3D G3DSA:3.40.50.720 1 112 1.4E-31 T 11-10-2018 BED32_01655 de643ecbcabc5c6c266736a02de98d03 470 Gene3D G3DSA:3.40.1010.10 215 331 3.7E-44 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 Pfam PF01220 Dehydroquinase class II 7 142 7.9E-61 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 150 2.0E-67 T 11-10-2018 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 SUPERFAMILY SSF52304 6 148 3.53E-61 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 PIRSF PIRSF001399 3 149 2.2E-58 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 Gene3D G3DSA:3.40.50.9100 1 150 6.9E-68 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 150 73.902 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_02440 31ce6019804cca763b91bece09b8e4ff 150 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 1.1E-60 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 SUPERFAMILY SSF54919 1 140 2.36E-58 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.146 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 9.6E-56 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 SMART SM00562 3 140 2.9E-84 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.1E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.1E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.1E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.1E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.1E-39 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16005 494e07928abe48e585641b6d73ee62e4 142 Gene3D G3DSA:3.30.70.141 1 141 3.8E-58 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 SUPERFAMILY SSF53335 4 204 3.84E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 38.777 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 Gene3D G3DSA:3.40.50.150 1 207 1.4E-78 T 11-10-2018 BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 1 207 1.6E-89 T 11-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 BED32_04635 67f157501ab99fdb1f634a82aa4ae03f 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 6 206 2.0E-76 T 11-10-2018 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 Gene3D G3DSA:3.40.50.2300 147 321 3.3E-31 T 11-10-2018 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 Gene3D G3DSA:3.40.50.2300 55 141 1.3E-18 T 11-10-2018 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 SUPERFAMILY SSF47413 1 50 4.69E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 Gene3D G3DSA:1.10.260.40 1 54 7.8E-20 T 11-10-2018 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 Pfam PF13377 Periplasmic binding protein-like domain 171 319 1.4E-12 T 11-10-2018 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 1 319 1.5E-119 T 11-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 SUPERFAMILY SSF53822 52 311 2.36E-47 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 42 1.1E-12 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_18455 f95e3109caddb797909bc62c5a956e1a 330 SMART SM00354 1 65 6.8E-21 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_16820 c692d8aa1251f229589d93e52c4dd2bf 198 SUPERFAMILY SSF53098 5 196 5.01E-69 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_16820 c692d8aa1251f229589d93e52c4dd2bf 198 Gene3D G3DSA:3.30.420.10 2 197 2.9E-74 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_16820 c692d8aa1251f229589d93e52c4dd2bf 198 Pfam PF01351 Ribonuclease HII 14 189 2.6E-39 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain BED32_16820 c692d8aa1251f229589d93e52c4dd2bf 198 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.381 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 BED32_16675 e4e4cd15c2eda3fcb9c2af248e61cc98 393 Pfam PF07690 Major Facilitator Superfamily 10 319 1.2E-41 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_16675 e4e4cd15c2eda3fcb9c2af248e61cc98 393 Gene3D G3DSA:1.20.1250.20 196 385 2.1E-24 T 11-10-2018 BED32_16675 e4e4cd15c2eda3fcb9c2af248e61cc98 393 SUPERFAMILY SSF103473 3 385 3.4E-64 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_16675 e4e4cd15c2eda3fcb9c2af248e61cc98 393 Gene3D G3DSA:1.20.1250.20 2 195 1.2E-27 T 11-10-2018 BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 Pfam PF13344 Haloacid dehalogenase-like hydrolase 6 105 5.9E-24 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 SUPERFAMILY SSF56784 1 247 4.14E-65 T 11-10-2018 IPR036412 HAD-like superfamily BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 Gene3D G3DSA:3.40.50.1000 6 232 3.9E-84 T 11-10-2018 IPR023214 HAD superfamily BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 Pfam PF13242 HAD-hyrolase-like 174 246 2.8E-20 T 11-10-2018 BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 Gene3D G3DSA:3.40.50.1000 71 174 3.9E-84 T 11-10-2018 IPR023214 HAD superfamily BED32_07545 d9f57cd993067d101c9febe3b70cdf7a 250 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 6 223 3.6E-63 T 11-10-2018 IPR006357 HAD-superfamily hydrolase, subfamily IIA BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 SUPERFAMILY SSF52935 323 469 5.23E-34 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 3.8E-77 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 Gene3D G3DSA:3.40.1380.20 336 467 1.7E-44 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 SUPERFAMILY SSF50800 70 167 2.27E-29 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 6.4E-186 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 3.7E-27 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 Gene3D G3DSA:2.40.33.10 71 167 3.7E-146 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 Gene3D G3DSA:3.20.20.60 4 332 3.7E-146 T 11-10-2018 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 341 1.9E-153 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10845 c2ebd05ee56672f0da62a9c4ebf6e145 470 SUPERFAMILY SSF51621 1 338 1.54E-101 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_13075 044407e0a310639b0cdc7e14246eeaaf 337 SUPERFAMILY SSF51445 1 292 1.26E-84 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_13075 044407e0a310639b0cdc7e14246eeaaf 337 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 8 288 5.6E-95 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_13075 044407e0a310639b0cdc7e14246eeaaf 337 Gene3D G3DSA:3.20.20.300 1 337 1.2E-129 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BED32_13075 044407e0a310639b0cdc7e14246eeaaf 337 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 230 247 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BED32_13075 044407e0a310639b0cdc7e14246eeaaf 337 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 328 47.246 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 75 323 6.5E-31 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 Pfam PF05683 Fumarase C-terminus 332 537 1.3E-93 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 SUPERFAMILY SSF117457 361 536 3.92E-62 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 373 537 1.3E-62 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 PIRSF PIRSF001394 30 547 5.9E-230 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 Gene3D G3DSA:3.20.130.10 347 537 1.3E-58 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BED32_04860 8bf10e8117867436c1ebe75f4227d578 547 Pfam PF05681 Fumarate hydratase (Fumerase) 51 325 6.8E-83 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BED32_03690 11dc4150880226cce50a3b59b8e84955 408 SUPERFAMILY SSF56317 174 390 1.05E-5 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Pfam PF01590 GAF domain 209 352 1.7E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Gene3D G3DSA:3.40.50.300 375 558 2.1E-64 T 11-10-2018 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Gene3D G3DSA:1.10.8.60 559 625 8.8E-24 T 11-10-2018 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SUPERFAMILY SSF55781 189 365 1.07E-21 T 11-10-2018 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SMART SM00382 408 552 8.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SUPERFAMILY SSF46689 601 707 3.45E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 474 489 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SUPERFAMILY SSF55781 16 187 1.72E-13 T 11-10-2018 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 412 425 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SMART SM00065 208 362 1.0E-16 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SMART SM00065 32 180 0.017 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Gene3D G3DSA:3.30.450.40 14 184 7.7E-12 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Gene3D G3DSA:1.10.10.60 650 711 5.0E-8 T 11-10-2018 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Pfam PF00158 Sigma-54 interaction domain 388 554 4.1E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_08455 46750722ca47df3284d0b12d04a026bd 719 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 601 610 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_08455 46750722ca47df3284d0b12d04a026bd 719 Gene3D G3DSA:3.30.450.40 192 363 2.6E-23 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_08455 46750722ca47df3284d0b12d04a026bd 719 SUPERFAMILY SSF52540 387 624 1.69E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 Gene3D G3DSA:3.40.50.620 5 206 3.2E-78 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 347 366 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 Gene3D G3DSA:1.25.40.80 134 291 3.2E-78 T 11-10-2018 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 Pfam PF00875 DNA photolyase 5 175 5.2E-40 T 11-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 Pfam PF03441 FAD binding domain of DNA photolyase 277 471 7.0E-81 T 11-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 327 339 - T 11-10-2018 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 Gene3D G3DSA:1.10.579.10 295 477 6.0E-82 T 11-10-2018 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 PRINTS PR00147 DNA photolyase signature 386 400 2.5E-30 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 PRINTS PR00147 DNA photolyase signature 347 365 2.5E-30 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 PRINTS PR00147 DNA photolyase signature 145 161 2.5E-30 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 PRINTS PR00147 DNA photolyase signature 327 343 2.5E-30 T 11-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 SUPERFAMILY SSF48173 193 474 5.49E-108 T 11-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 BED32_07690 e20b77f2f6731ab82105254022f8dbaf 481 SUPERFAMILY SSF52425 3 200 2.88E-52 T 11-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 BED32_21675 70432d0eda0082c38bd9ae098eb4af10 256 Pfam PF00589 Phage integrase family 47 229 8.8E-32 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_21675 70432d0eda0082c38bd9ae098eb4af10 256 Gene3D G3DSA:1.10.443.10 55 234 1.8E-29 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_21675 70432d0eda0082c38bd9ae098eb4af10 256 SUPERFAMILY SSF56349 50 229 1.38E-29 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_21675 70432d0eda0082c38bd9ae098eb4af10 256 PIRSF PIRSF004576 1 254 2.8E-90 T 11-10-2018 IPR016423 Resolvase, Rsv BED32_22140 70432d0eda0082c38bd9ae098eb4af10 256 Pfam PF00589 Phage integrase family 47 229 8.8E-32 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_22140 70432d0eda0082c38bd9ae098eb4af10 256 Gene3D G3DSA:1.10.443.10 55 234 1.8E-29 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_22140 70432d0eda0082c38bd9ae098eb4af10 256 SUPERFAMILY SSF56349 50 229 1.38E-29 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_22140 70432d0eda0082c38bd9ae098eb4af10 256 PIRSF PIRSF004576 1 254 2.8E-90 T 11-10-2018 IPR016423 Resolvase, Rsv BED32_08900 5561834c84615590abaf6a11341630a3 91 SUPERFAMILY SSF143414 3 89 8.5E-33 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08900 5561834c84615590abaf6a11341630a3 91 SMART SM00877 3 79 1.8E-38 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08900 5561834c84615590abaf6a11341630a3 91 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 4 47 2.0E-16 T 11-10-2018 BED32_08900 5561834c84615590abaf6a11341630a3 91 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 21 40 - T 11-10-2018 IPR020808 Bacterial microcompartments protein, conserved site BED32_08900 5561834c84615590abaf6a11341630a3 91 Gene3D G3DSA:3.30.70.1710 1 91 1.7E-41 T 11-10-2018 BED32_08900 5561834c84615590abaf6a11341630a3 91 Pfam PF00936 BMC domain 4 79 1.3E-29 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Gene3D G3DSA:3.30.2350.10 1 249 1.5E-92 T 11-10-2018 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 SUPERFAMILY SSF88697 251 310 3.43E-14 T 11-10-2018 IPR015947 PUA-like superfamily BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 SUPERFAMILY SSF55120 10 248 1.3E-80 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 219 1.1E-88 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 309 18.75 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 3.3E-56 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Gene3D G3DSA:2.30.130.10 250 314 6.0E-28 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 252 309 2.4E-20 T 11-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18915 10d1d09f7c561a4cc345db7ae0348627 329 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 248 7.4E-24 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 SMART SM00342 306 389 2.8E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 SUPERFAMILY SSF46689 289 337 9.54E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 SUPERFAMILY SSF46689 343 392 3.94E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 Pfam PF12833 Helix-turn-helix domain 314 389 1.8E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 Gene3D G3DSA:3.40.50.2300 102 283 5.4E-87 T 11-10-2018 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 343 385 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 Gene3D G3DSA:3.40.50.2300 8 274 5.4E-87 T 11-10-2018 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 Gene3D G3DSA:1.10.10.60 286 395 4.1E-28 T 11-10-2018 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 SUPERFAMILY SSF53822 10 304 6.85E-41 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 358 373 5.7E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 373 389 5.7E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_20590 835a0fe958b6b168e5f3e65a5578810a 397 Pfam PF13377 Periplasmic binding protein-like domain 113 282 1.4E-33 T 11-10-2018 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 Gene3D G3DSA:3.40.50.2300 71 309 1.2E-75 T 11-10-2018 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 SUPERFAMILY SSF53822 69 333 7.07E-72 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 Gene3D G3DSA:1.10.260.40 2 66 1.2E-20 T 11-10-2018 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 SMART SM00354 8 79 1.1E-22 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 56 2.8E-12 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 68 273 3.9E-35 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 SUPERFAMILY SSF47413 7 67 3.62E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_04125 09240897ef42591a9ad3ada42f4e8604 339 Gene3D G3DSA:3.40.50.2300 167 295 1.2E-75 T 11-10-2018 BED32_08845 a68efc380bf8a8f2cb0d4ed9a374b3b7 144 Pfam PF10662 Ethanolamine utilisation - propanediol utilisation 1 142 2.3E-55 T 11-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 BED32_08845 a68efc380bf8a8f2cb0d4ed9a374b3b7 144 Gene3D G3DSA:3.40.50.300 1 143 7.2E-15 T 11-10-2018 BED32_08845 a68efc380bf8a8f2cb0d4ed9a374b3b7 144 PIRSF PIRSF036409 1 144 1.5E-52 T 11-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 BED32_08845 a68efc380bf8a8f2cb0d4ed9a374b3b7 144 TIGRFAM TIGR02528 EutP: ethanolamine utilization protein, EutP 2 142 1.3E-51 T 11-10-2018 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV GO:0005524|GO:0006576 BED32_08845 a68efc380bf8a8f2cb0d4ed9a374b3b7 144 SUPERFAMILY SSF52540 3 141 1.21E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13790 56adefda32127e91d326c5d2ca2113da 85 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 66 4.6E-40 T 11-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 SMART SM00357 3 67 1.5E-25 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 PIRSF PIRSF002599 1 82 1.2E-21 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 Pfam PF00313 'Cold-shock' DNA-binding domain 3 61 6.8E-27 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 Gene3D G3DSA:2.40.50.140 2 65 9.7E-25 T 11-10-2018 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 SUPERFAMILY SSF50249 1 61 1.32E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13790 56adefda32127e91d326c5d2ca2113da 85 PRINTS PR00050 Cold shock protein signature 4 19 1.1E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 PRINTS PR00050 Cold shock protein signature 40 58 1.1E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 PRINTS PR00050 Cold shock protein signature 25 34 1.1E-14 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13790 56adefda32127e91d326c5d2ca2113da 85 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 SUPERFAMILY SSF50800 74 168 4.71E-25 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 SUPERFAMILY SSF51621 3 345 9.07E-88 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 Gene3D G3DSA:3.40.1380.20 342 474 4.9E-153 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 Gene3D G3DSA:3.20.20.60 6 341 4.9E-153 T 11-10-2018 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 477 1.6E-29 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 SUPERFAMILY SSF52935 329 479 7.2E-39 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 Pfam PF00224 Pyruvate kinase, barrel domain 6 344 8.7E-132 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 3.8E-172 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 Gene3D G3DSA:2.40.33.10 74 172 4.9E-153 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 300 318 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 63 79 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 275 299 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 250 274 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 190 204 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 223 249 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_10235 7eb4e2f0086a8439dc9a7a746c995ac0 480 PRINTS PR01050 Pyruvate kinase family signature 319 335 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 PIRSF PIRSF006246 1 125 7.9E-53 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 126 1.9E-60 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 70.163 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 Pfam PF02261 Aspartate decarboxylase 1 114 9.6E-48 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 7.0E-65 T 11-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 SUPERFAMILY SSF50692 1 115 1.16E-46 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_17670 26bcd4a8d3c0c42798406452a0ad62d7 126 Gene3D G3DSA:2.40.40.20 1 126 5.0E-54 T 11-10-2018 BED32_03595 4ef9381ec948bac28230ccc3287011d4 457 SUPERFAMILY SSF53300 160 442 9.71E-14 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BED32_03595 4ef9381ec948bac28230ccc3287011d4 457 Pfam PF00092 von Willebrand factor type A domain 305 435 4.1E-6 T 11-10-2018 IPR002035 von Willebrand factor, type A BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 643 45.067 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SMART SM00955 189 517 1.3E-125 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Pfam PF08206 Ribonuclease B OB domain 24 80 5.9E-19 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 642 0.0 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SUPERFAMILY SSF50249 8 80 2.19E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SUPERFAMILY SSF50249 560 642 4.28E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SMART SM00357 23 79 1.5E-12 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Gene3D G3DSA:2.40.50.640 83 155 1.7E-29 T 11-10-2018 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Pfam PF00575 S1 RNA binding domain 560 638 7.3E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Pfam PF00773 RNB domain 189 516 3.0E-86 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SUPERFAMILY SSF50249 177 556 1.26E-115 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Gene3D G3DSA:2.40.50.140 1 82 1.7E-30 T 11-10-2018 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 ProSitePatterns PS01175 Ribonuclease II family signature. 484 508 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 643 4.8E-220 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 Gene3D G3DSA:2.40.50.140 558 644 6.0E-35 T 11-10-2018 BED32_11840 b6d5d6d8f0e5e4659a7519a718a3a627 644 SUPERFAMILY SSF50249 83 171 1.46E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 Pfam PF02445 Quinolinate synthetase A protein 31 339 1.6E-102 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 Gene3D G3DSA:3.40.50.10800 115 339 3.5E-94 T 11-10-2018 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 Gene3D G3DSA:3.40.50.10800 31 322 3.5E-94 T 11-10-2018 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 Gene3D G3DSA:3.40.50.10800 200 295 3.5E-94 T 11-10-2018 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 1.1E-118 T 11-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 70.216 T 11-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BED32_07860 f7f606b2031cdb9d7375548a4284b96b 353 SUPERFAMILY SSF142754 29 340 5.1E-105 T 11-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 125 2.4E-26 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 SUPERFAMILY SSF55347 133 293 1.7E-17 T 11-10-2018 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 Gene3D G3DSA:3.30.360.10 144 266 3.0E-106 T 11-10-2018 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 SUPERFAMILY SSF51735 3 154 8.62E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 239 2.2E-10 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 1 336 50.534 T 11-10-2018 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 BED32_01340 a67be5a1d7023cdbed599d48db57a8e5 337 Gene3D G3DSA:3.40.50.720 4 318 3.0E-106 T 11-10-2018 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Pfam PF05190 MutS family domain IV 428 517 2.0E-28 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Gene3D G3DSA:1.10.1420.10 269 559 1.1E-105 T 11-10-2018 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SUPERFAMILY SSF52540 567 798 5.91E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Pfam PF05192 MutS domain III 272 559 2.5E-39 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 10 843 25.296 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Pfam PF01624 MutS domain I 11 122 1.9E-40 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Gene3D G3DSA:3.40.1170.10 2 124 3.5E-51 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SUPERFAMILY SSF48334 270 564 6.93E-91 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily BED32_04650 e5d860376c15656b51e99e618622b5b7 851 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 688 704 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Pfam PF05188 MutS domain II 131 256 1.7E-33 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Gene3D G3DSA:1.10.1420.10 387 503 1.1E-105 T 11-10-2018 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Gene3D G3DSA:3.40.50.300 571 848 1.2E-101 T 11-10-2018 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SUPERFAMILY SSF53150 117 269 1.44E-42 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SMART SM00534 607 794 3.6E-123 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Pfam PF00488 MutS domain V 610 797 1.4E-88 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 Gene3D G3DSA:3.30.420.110 130 265 1.3E-38 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 848 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SUPERFAMILY SSF55271 5 116 4.19E-42 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 SMART SM00533 286 591 3.3E-106 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 BED32_04650 e5d860376c15656b51e99e618622b5b7 851 PIRSF PIRSF037677 3 835 2.0E-152 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 467 20.204 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PIRSF PIRSF002869 1 511 2.3E-177 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 506 4.2E-165 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 Pfam PF03023 MviN-like protein 28 477 4.7E-152 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 33 52 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 357 376 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 133 157 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 52 68 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 409 426 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 259 285 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_09915 bde137c59e9c3c9de05e1f88eddc703f 511 PRINTS PR01806 Virulence factor MviN signature 157 178 2.0E-84 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ BED32_03830 3e68f22b6057f593243ca0814072546e 352 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 228 237 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_03830 3e68f22b6057f593243ca0814072546e 352 Gene3D G3DSA:1.10.8.60 188 262 2.1E-20 T 11-10-2018 BED32_03830 3e68f22b6057f593243ca0814072546e 352 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 40 53 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_03830 3e68f22b6057f593243ca0814072546e 352 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 102 117 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_03830 3e68f22b6057f593243ca0814072546e 352 Gene3D G3DSA:1.10.10.60 285 348 2.9E-8 T 11-10-2018 BED32_03830 3e68f22b6057f593243ca0814072546e 352 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 324 344 1.8E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_03830 3e68f22b6057f593243ca0814072546e 352 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 307 324 1.8E-5 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_03830 3e68f22b6057f593243ca0814072546e 352 Pfam PF02954 Bacterial regulatory protein, Fis family 306 339 3.9E-10 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_03830 3e68f22b6057f593243ca0814072546e 352 Pfam PF00158 Sigma-54 interaction domain 19 183 4.3E-66 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_03830 3e68f22b6057f593243ca0814072546e 352 SUPERFAMILY SSF52540 26 256 3.09E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03830 3e68f22b6057f593243ca0814072546e 352 SUPERFAMILY SSF46689 228 340 3.27E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03830 3e68f22b6057f593243ca0814072546e 352 Gene3D G3DSA:3.40.50.300 3 187 4.6E-60 T 11-10-2018 BED32_03830 3e68f22b6057f593243ca0814072546e 352 SMART SM00382 36 179 3.5E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 Gene3D G3DSA:3.40.50.620 1 179 1.2E-80 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 SUPERFAMILY SSF52374 1 281 2.58E-106 T 11-10-2018 BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 Gene3D G3DSA:3.30.1300.10 180 283 3.0E-31 T 11-10-2018 BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 2.0E-102 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 2.5E-115 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.971 T 11-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 BED32_17665 17cb92a70f9cf4a20ffd4b8b89afa687 284 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 62 4.4E-7 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_07460 4cbcdfe02fedd9d6a23111569dbf8ae6 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 223 3.1E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_07460 4cbcdfe02fedd9d6a23111569dbf8ae6 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 118 4.9E-24 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_07460 4cbcdfe02fedd9d6a23111569dbf8ae6 224 SUPERFAMILY SSF161098 14 209 4.84E-39 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07460 4cbcdfe02fedd9d6a23111569dbf8ae6 224 Gene3D G3DSA:1.10.3720.10 2 224 3.4E-50 T 11-10-2018 IPR035906 MetI-like superfamily BED32_20840 9df7e13c892d7117232210cfe59fd67a 201 Pfam PF07305 Protein of unknown function (DUF1454) 9 200 8.0E-85 T 11-10-2018 IPR009918 Protein of unknown function DUF1454 BED32_14195 1b322023d70943593208846e2f067e62 530 Pfam PF00005 ABC transporter 27 185 2.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14195 1b322023d70943593208846e2f067e62 530 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 505 527 0.46 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_14195 1b322023d70943593208846e2f067e62 530 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 264 6.5E-4 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_14195 1b322023d70943593208846e2f067e62 530 SUPERFAMILY SSF52540 6 257 2.77E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14195 1b322023d70943593208846e2f067e62 530 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_14195 1b322023d70943593208846e2f067e62 530 SUPERFAMILY SSF52540 276 525 2.56E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14195 1b322023d70943593208846e2f067e62 530 Gene3D G3DSA:3.40.50.300 4 271 3.3E-79 T 11-10-2018 BED32_14195 1b322023d70943593208846e2f067e62 530 Gene3D G3DSA:3.40.50.300 274 529 1.5E-82 T 11-10-2018 BED32_14195 1b322023d70943593208846e2f067e62 530 Pfam PF00005 ABC transporter 303 454 2.4E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14195 1b322023d70943593208846e2f067e62 530 ProSitePatterns PS00211 ABC transporters family signature. 426 440 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_14195 1b322023d70943593208846e2f067e62 530 SMART SM00382 312 502 3.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14195 1b322023d70943593208846e2f067e62 530 SMART SM00382 35 235 9.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21440 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 50 75 2.1E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 33 48 2.1E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 PRINTS PR00124 ATP synthase C subunit signature 12 31 2.1E-8 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 Pfam PF00137 ATP synthase subunit C 11 69 9.9E-10 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 ProSitePatterns PS00605 ATP synthase c subunit signature. 40 61 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 SUPERFAMILY SSF81333 3 77 2.75E-18 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily BED32_21440 fb7786ab362cf67342a12597eb194d21 79 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 77 1.9E-31 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 Gene3D G3DSA:1.20.20.10 1 79 2.4E-34 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21440 fb7786ab362cf67342a12597eb194d21 79 Hamap MF_01396 ATP synthase subunit c [atpH]. 10 75 14.452 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 Pfam PF02132 RecR protein 41 77 1.6E-14 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 Gene3D G3DSA:1.10.8.420 1 53 1.9E-18 T 11-10-2018 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 TIGRFAM TIGR00615 recR: recombination protein RecR 2 197 4.6E-80 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 11-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 101.422 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 Pfam PF13662 Toprim domain 82 172 7.6E-21 T 11-10-2018 IPR006171 TOPRIM domain BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 SUPERFAMILY SSF111304 2 199 3.01E-70 T 11-10-2018 IPR023627 Recombination protein RecR BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 Gene3D G3DSA:3.40.1360.10 77 199 4.7E-38 T 11-10-2018 BED32_06300 44c630b1aebfbcbc388ef0d63ef081af 201 SMART SM00493 81 166 2.6E-17 T 11-10-2018 IPR006171 TOPRIM domain BED32_10575 4bfc0f657836644e9358aac861c7afb3 289 Gene3D G3DSA:3.30.200.20 1 92 2.4E-20 T 11-10-2018 BED32_10575 4bfc0f657836644e9358aac861c7afb3 289 SUPERFAMILY SSF56112 3 280 1.63E-38 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_10575 4bfc0f657836644e9358aac861c7afb3 289 Gene3D G3DSA:3.90.1200.10 98 287 3.4E-58 T 11-10-2018 BED32_10575 4bfc0f657836644e9358aac861c7afb3 289 PIRSF PIRSF006221 1 287 1.7E-92 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 BED32_10575 4bfc0f657836644e9358aac861c7afb3 289 Pfam PF03881 Fructosamine kinase 1 285 4.8E-117 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 BED32_07885 8f811727d4214999a51f1114ea6f9c68 283 Gene3D G3DSA:3.40.570.10 42 283 1.7E-72 T 11-10-2018 BED32_07885 8f811727d4214999a51f1114ea6f9c68 283 SMART SM00892 62 264 3.9E-42 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 BED32_07885 8f811727d4214999a51f1114ea6f9c68 283 Pfam PF01223 DNA/RNA non-specific endonuclease 47 263 8.4E-43 T 11-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 BED32_07885 8f811727d4214999a51f1114ea6f9c68 283 SUPERFAMILY SSF54060 46 267 1.24E-47 T 11-10-2018 BED32_07885 8f811727d4214999a51f1114ea6f9c68 283 SMART SM00477 63 264 4.4E-41 T 11-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 Gene3D G3DSA:1.20.1250.20 248 486 1.5E-12 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 152 176 8.0E-10 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 127 151 8.0E-10 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 389 408 8.0E-10 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 65 87 8.0E-10 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 PRINTS PR01036 Tetracycline resistance protein TetB signature 326 346 8.0E-10 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 Gene3D G3DSA:1.20.1720.10 2 235 3.8E-34 T 11-10-2018 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 Pfam PF07690 Major Facilitator Superfamily 7 398 2.1E-38 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_15145 bbaacc8a8fbfe386865e6ab598f1d7eb 507 SUPERFAMILY SSF103473 2 485 1.7E-54 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_16395 9956c16b4cc84cbccd153fc45b3d73db 115 Gene3D G3DSA:1.20.58.280 14 115 4.2E-37 T 11-10-2018 BED32_16395 9956c16b4cc84cbccd153fc45b3d73db 115 PIRSF PIRSF000699 11 115 3.3E-39 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BED32_16395 9956c16b4cc84cbccd153fc45b3d73db 115 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 20 112 1.5E-33 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BED32_16395 9956c16b4cc84cbccd153fc45b3d73db 115 SUPERFAMILY SSF46973 15 113 6.93E-35 T 11-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 2 438 2.3E-229 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 SUPERFAMILY SSF54680 337 439 2.09E-32 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 SUPERFAMILY SSF52418 75 334 6.8E-88 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 SMART SM00941 350 424 3.8E-33 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Gene3D G3DSA:1.20.970.10 7 195 7.7E-131 T 11-10-2018 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 2.4E-25 T 11-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 PIRSF PIRSF000478 1 439 4.6E-153 T 11-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Hamap MF_01628 Thymidine phosphorylase [deoA]. 2 438 47.331 T 11-10-2018 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 SUPERFAMILY SSF47648 3 70 3.66E-21 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 11-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Pfam PF00591 Glycosyl transferase family, a/b domain 79 309 1.2E-51 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 2.2E-18 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Gene3D G3DSA:3.40.1030.10 70 322 7.7E-131 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 Gene3D G3DSA:3.90.1170.30 337 433 4.4E-33 T 11-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18345 70b0040f81dd6b555f0ab452918f7dc2 440 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 8.1E-167 T 11-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 15 33 - T 11-10-2018 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 SMART SM00354 12 82 1.2E-28 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 SUPERFAMILY SSF47413 12 70 4.59E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 Gene3D G3DSA:3.40.50.2300 74 317 1.5E-58 T 11-10-2018 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 Gene3D G3DSA:1.10.260.40 3 70 1.0E-20 T 11-10-2018 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 Gene3D G3DSA:3.40.50.2300 168 301 1.5E-58 T 11-10-2018 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 Pfam PF13377 Periplasmic binding protein-like domain 180 341 5.8E-28 T 11-10-2018 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 5.4E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14665 143dbd63b151a4b4026ad4dcf1004f9b 341 SUPERFAMILY SSF53822 70 324 7.26E-43 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Gene3D G3DSA:3.50.50.60 158 276 3.5E-94 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 66.152 T 11-10-2018 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 326 2.9E-58 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 SUPERFAMILY SSF55424 345 463 4.47E-30 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PIRSF PIRSF000350 1 463 3.9E-71 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Gene3D G3DSA:3.30.390.30 345 464 6.8E-32 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Gene3D G3DSA:3.50.50.60 7 332 3.5E-94 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 3.3E-52 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 SUPERFAMILY SSF51905 1 322 1.67E-55 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 4.1E-27 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 4.1E-27 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 4.1E-27 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 4.1E-27 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 4.1E-27 T 11-10-2018 BED32_00690 c0c5989b6f49cb76141c31ef47764d69 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 6.8E-30 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 263 453 1.1E-58 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Gene3D G3DSA:3.20.20.70 14 261 9.8E-183 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 261 458 30.508 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 9 260 34.875 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Gene3D G3DSA:3.20.20.70 262 452 9.8E-183 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 SUPERFAMILY SSF51366 263 456 2.83E-58 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 Pfam PF00218 Indole-3-glycerol phosphate synthase 11 257 4.0E-96 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 BED32_12005 1eab4d7b7a90db511b610232a8e96114 458 SUPERFAMILY SSF51366 9 257 6.95E-84 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_09415 86450cb885045aced29d6335d85c66e0 425 Gene3D G3DSA:3.90.550.10 3 300 2.9E-91 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_09415 86450cb885045aced29d6335d85c66e0 425 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 51.128 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_09415 86450cb885045aced29d6335d85c66e0 425 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_09415 86450cb885045aced29d6335d85c66e0 425 Gene3D G3DSA:2.160.10.10 301 425 7.2E-38 T 11-10-2018 BED32_09415 86450cb885045aced29d6335d85c66e0 425 SUPERFAMILY SSF53448 19 359 1.01E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_09415 86450cb885045aced29d6335d85c66e0 425 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_09415 86450cb885045aced29d6335d85c66e0 425 SUPERFAMILY SSF51161 310 408 4.16E-18 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_09415 86450cb885045aced29d6335d85c66e0 425 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.2E-153 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_09415 86450cb885045aced29d6335d85c66e0 425 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_09415 86450cb885045aced29d6335d85c66e0 425 Pfam PF00483 Nucleotidyl transferase 22 290 9.0E-68 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_00600 bf11ec3b283ee22fa00dd359147bf9a8 294 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 25 290 6.9E-105 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 BED32_00600 bf11ec3b283ee22fa00dd359147bf9a8 294 SUPERFAMILY SSF51730 22 293 2.55E-96 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like BED32_00600 bf11ec3b283ee22fa00dd359147bf9a8 294 Pfam PF02219 Methylenetetrahydrofolate reductase 16 291 7.3E-110 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 BED32_00600 bf11ec3b283ee22fa00dd359147bf9a8 294 Gene3D G3DSA:3.20.20.220 1 294 5.2E-118 T 11-10-2018 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 Gene3D G3DSA:3.40.50.720 125 292 8.4E-126 T 11-10-2018 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 SUPERFAMILY SSF50129 1 144 1.57E-46 T 11-10-2018 IPR011032 GroES-like superfamily BED32_02455 3450713e08118dfe0215e86f45b2424e 325 SMART SM00829 11 322 3.2E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 Pfam PF00107 Zinc-binding dehydrogenase 158 269 3.1E-17 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 86 9.0E-5 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 2 324 1.6E-137 T 11-10-2018 IPR014188 Acrylyl-CoA reductase AcuI BED32_02455 3450713e08118dfe0215e86f45b2424e 325 Gene3D G3DSA:3.90.180.10 16 323 8.4E-126 T 11-10-2018 BED32_02455 3450713e08118dfe0215e86f45b2424e 325 SUPERFAMILY SSF51735 117 288 3.03E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Gene3D G3DSA:3.30.460.10 66 231 4.1E-66 T 11-10-2018 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Pfam PF12626 Polymerase A arginine-rich C-terminus 379 498 1.8E-43 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 39 497 38.345 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Gene3D G3DSA:1.10.3090.10 232 483 1.8E-101 T 11-10-2018 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 SUPERFAMILY SSF81891 232 470 1.12E-50 T 11-10-2018 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 SUPERFAMILY SSF81301 71 230 1.72E-40 T 11-10-2018 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Pfam PF01743 Poly A polymerase head domain 100 234 1.2E-39 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 69 498 6.8E-159 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 BED32_17650 a227f55fe28fc0d114106bb075d0af87 506 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 261 321 7.8E-20 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BED32_01065 74569401369e799c8f695a14932a5285 572 Gene3D G3DSA:1.50.10.20 27 527 0.0 T 11-10-2018 BED32_01065 74569401369e799c8f695a14932a5285 572 Gene3D G3DSA:2.30.30.880 69 562 0.0 T 11-10-2018 BED32_01065 74569401369e799c8f695a14932a5285 572 Gene3D G3DSA:2.20.25.430 281 397 0.0 T 11-10-2018 BED32_01065 74569401369e799c8f695a14932a5285 572 Pfam PF06917 Periplasmic pectate lyase 18 572 0.0 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 BED32_01065 74569401369e799c8f695a14932a5285 572 PIRSF PIRSF001432 1 565 4.1E-276 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Pfam PF08841 Diol dehydratase reactivase ATPase-like domain 275 602 1.7E-161 T 11-10-2018 IPR030994 Diol dehydratase reactivase ATPase-like domain BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Gene3D G3DSA:3.50.30.70 97 247 8.1E-266 T 11-10-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain superfamily BED32_08910 060635215017fdd357130bd3b0eccbf5 608 SUPERFAMILY SSF53067 407 600 1.58E-32 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 SUPERFAMILY SSF53067 2 403 5.83E-70 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Gene3D G3DSA:3.30.420.40 405 582 8.1E-266 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 PIRSF PIRSF011502 1 608 0.0 T 11-10-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Gene3D G3DSA:3.90.470.30 77 370 8.1E-266 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 TIGRFAM TIGR04491 reactive_PduG: diol dehydratase reactivase alpha subunit 3 601 1.9E-289 T 11-10-2018 IPR009191 Diol dehydratase-reactivating factor alpha subunit BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Gene3D G3DSA:3.30.420.40 3 600 8.1E-266 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 Gene3D G3DSA:2.40.50.140 466 510 8.1E-266 T 11-10-2018 BED32_08910 060635215017fdd357130bd3b0eccbf5 608 SUPERFAMILY SSF82317 93 254 6.02E-68 T 11-10-2018 IPR028975 Diol dehydratase-reactivating factor, alpha subunit, swiveling domain superfamily BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Gene3D G3DSA:3.30.1370.120 273 350 9.5E-16 T 11-10-2018 IPR038591 NolW-like superfamily BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 533 566 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 38 597 2.8E-147 T 11-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 PRINTS PR00811 Bacterial general secretion pathway protein D signature 352 362 2.6E-35 T 11-10-2018 IPR001775 GspD/PilQ family BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 PRINTS PR00811 Bacterial general secretion pathway protein D signature 419 443 2.6E-35 T 11-10-2018 IPR001775 GspD/PilQ family BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 PRINTS PR00811 Bacterial general secretion pathway protein D signature 454 464 2.6E-35 T 11-10-2018 IPR001775 GspD/PilQ family BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 PRINTS PR00811 Bacterial general secretion pathway protein D signature 552 570 2.6E-35 T 11-10-2018 IPR001775 GspD/PilQ family BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 PRINTS PR00811 Bacterial general secretion pathway protein D signature 575 589 2.6E-35 T 11-10-2018 IPR001775 GspD/PilQ family BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Pfam PF00263 Bacterial type II and III secretion system protein 423 588 8.6E-49 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Gene3D G3DSA:3.30.1370.120 197 268 4.7E-16 T 11-10-2018 IPR038591 NolW-like superfamily BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Pfam PF03958 Bacterial type II/III secretion system short domain 135 195 4.6E-10 T 11-10-2018 IPR005644 NolW-like BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Pfam PF03958 Bacterial type II/III secretion system short domain 199 269 2.8E-9 T 11-10-2018 IPR005644 NolW-like BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Pfam PF03958 Bacterial type II/III secretion system short domain 275 352 7.3E-16 T 11-10-2018 IPR005644 NolW-like BED32_17215 d0cac8a568a9d3f81264f57ca6e58848 648 Gene3D G3DSA:3.30.1370.120 29 194 2.0E-50 T 11-10-2018 IPR038591 NolW-like superfamily BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 397 407 1.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 393 1.4E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 294 1.5E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 Gene3D G3DSA:1.10.287.130 180 297 1.6E-29 T 11-10-2018 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SUPERFAMILY SSF47384 216 296 7.46E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SMART SM00387 342 452 1.4E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SUPERFAMILY SSF158472 177 230 9.42E-9 T 11-10-2018 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 Gene3D G3DSA:3.30.565.10 300 451 2.4E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 Pfam PF00672 HAMP domain 177 228 1.1E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 449 7.1E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SUPERFAMILY SSF55874 285 451 1.44E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SMART SM00388 232 295 1.9E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_15365 0a5e9edfa19a2cec4b3268dfa493272c 455 SMART SM00304 176 231 7.8E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_16230 2ee0256a412acf31eac9a9da4e1d61c7 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 239 8.9E-104 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BED32_16230 2ee0256a412acf31eac9a9da4e1d61c7 243 SUPERFAMILY SSF63892 4 242 1.7E-100 T 11-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BED32_16230 2ee0256a412acf31eac9a9da4e1d61c7 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 4.1E-103 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BED32_16230 2ee0256a412acf31eac9a9da4e1d61c7 243 Gene3D G3DSA:3.20.20.70 1 243 1.3E-108 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_16230 2ee0256a412acf31eac9a9da4e1d61c7 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 132.993 T 11-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 BED32_09265 05df946b114d216bf254b9c75263fb03 485 PIRSF PIRSF002457 1 485 1.1E-156 T 11-10-2018 IPR030676 Citrate carrier CitT-related BED32_09265 05df946b114d216bf254b9c75263fb03 485 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 479 2.1E-163 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BED32_09265 05df946b114d216bf254b9c75263fb03 485 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 481 6.4E-174 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BED32_11010 922eccdaa5fec4bf701e97a7977085dc 117 Gene3D G3DSA:3.10.180.10 10 116 8.5E-19 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_11010 922eccdaa5fec4bf701e97a7977085dc 117 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 111 3.0E-8 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BED32_11010 922eccdaa5fec4bf701e97a7977085dc 117 SUPERFAMILY SSF54593 9 116 3.09E-24 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Pfam PF00122 E1-E2 ATPase 272 451 1.2E-44 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00941 Cadmium-transporting ATPase signature 86 95 2.0E-8 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00941 Cadmium-transporting ATPase signature 97 118 2.0E-8 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00941 Cadmium-transporting ATPase signature 337 353 2.0E-8 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00941 Cadmium-transporting ATPase signature 256 276 2.0E-8 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00941 Cadmium-transporting ATPase signature 276 292 2.0E-8 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Gene3D G3DSA:3.30.70.100 81 150 5.7E-16 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Gene3D G3DSA:3.40.1110.10 483 602 1.6E-82 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Gene3D G3DSA:2.70.150.20 271 376 1.0E-30 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 SUPERFAMILY SSF81653 274 371 1.7E-20 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Pfam PF00702 haloacid dehalogenase-like hydrolase 468 681 3.9E-38 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Gene3D G3DSA:3.40.50.1000 453 719 1.6E-82 T 11-10-2018 IPR023214 HAD superfamily BED32_20225 5ab7da6269e997de5402c06caef8744d 776 Pfam PF00403 Heavy-metal-associated domain 87 143 1.4E-10 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 ProSitePatterns PS01229 Hypothetical cof family signature 2. 668 690 - T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 221 770 1.9E-174 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 244 746 7.4E-81 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 SUPERFAMILY SSF56784 470 768 9.42E-53 T 11-10-2018 IPR036412 HAD-like superfamily BED32_20225 5ab7da6269e997de5402c06caef8744d 776 SUPERFAMILY SSF55008 82 146 1.15E-13 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 321 335 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 668 687 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 691 703 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 472 486 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 595 606 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 617 627 1.6E-28 T 11-10-2018 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 SUPERFAMILY SSF81665 223 756 9.55E-17 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 ProSitePatterns PS01047 Heavy-metal-associated domain. 88 117 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BED32_20225 5ab7da6269e997de5402c06caef8744d 776 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 474 480 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 SUPERFAMILY SSF48179 621 714 2.21E-23 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Gene3D G3DSA:1.10.1040.50 497 709 2.4E-74 T 11-10-2018 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 496 592 2.1E-26 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Gene3D G3DSA:3.40.50.720 314 496 3.3E-65 T 11-10-2018 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 205 2.4E-42 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 SUPERFAMILY SSF52096 2 303 3.22E-70 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 11-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 SUPERFAMILY SSF48179 495 612 1.28E-29 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 493 517 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Gene3D G3DSA:3.90.226.10 1 311 2.9E-95 T 11-10-2018 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 SUPERFAMILY SSF51735 314 495 1.82E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 494 3.2E-60 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.484 T 11-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_19970 bfdb80b69246a9d0b2f9a979ff214f75 729 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 424 43.678 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Gene3D G3DSA:3.90.600.10 330 425 2.6E-36 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 5.3E-34 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Gene3D G3DSA:3.30.1490.20 122 190 1.3E-27 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 SMART SM01209 103 296 2.0E-141 T 11-10-2018 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Gene3D G3DSA:3.30.470.20 191 329 2.3E-61 T 11-10-2018 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 SUPERFAMILY SSF56059 104 323 9.9E-69 T 11-10-2018 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 424 5.7E-183 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 SUPERFAMILY SSF51246 329 425 4.34E-34 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 SMART SM01210 330 424 1.3E-55 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 422 2.6E-29 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 SUPERFAMILY SSF52440 1 103 5.47E-36 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 3.0E-83 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 11-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_19755 65079361fd81bc80eb0dd7631f7e0664 431 Gene3D G3DSA:3.40.50.20 2 95 2.9E-37 T 11-10-2018 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 Gene3D G3DSA:1.10.287.470 94 185 7.5E-89 T 11-10-2018 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 363 2.2E-60 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 Gene3D G3DSA:2.40.420.20 45 362 7.5E-89 T 11-10-2018 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 Gene3D G3DSA:2.40.50.100 60 222 7.5E-89 T 11-10-2018 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 49 294 1.9E-21 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 SUPERFAMILY SSF111369 52 298 3.66E-29 T 11-10-2018 BED32_13800 fb0831a250e1e2a3763f350c67d0bfdb 370 Gene3D G3DSA:2.40.30.170 49 301 7.5E-89 T 11-10-2018 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 SMART SM00342 24 107 4.2E-26 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 61 103 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 Pfam PF12833 Helix-turn-helix domain 30 108 3.9E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 SUPERFAMILY SSF46689 11 58 1.88E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 Gene3D G3DSA:1.10.10.60 61 119 1.2E-16 T 11-10-2018 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 76 91 1.4E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 91 107 1.4E-7 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 Gene3D G3DSA:1.10.10.60 1 60 1.0E-18 T 11-10-2018 BED32_12800 5fb3d14b69229d8f240aae3c1609768d 128 SUPERFAMILY SSF46689 60 110 5.82E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 Pfam PF01676 Metalloenzyme superfamily 2 398 3.8E-44 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 405 2.6E-197 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 SUPERFAMILY SSF53649 1 407 2.38E-74 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 Gene3D G3DSA:3.40.720.10 3 406 1.4E-158 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 SUPERFAMILY SSF143856 117 235 1.31E-50 T 11-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 Hamap MF_00740 Phosphopentomutase [deoB]. 1 407 56.205 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 PIRSF PIRSF001491 1 407 2.3E-168 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_18340 ac691e5286ab28bf8ae46a10f536b29a 407 Gene3D G3DSA:3.30.70.1250 115 238 1.4E-158 T 11-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 SUPERFAMILY SSF53067 4 319 2.14E-64 T 11-10-2018 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 TIGRFAM TIGR00749 glk: glucokinase 6 310 1.5E-140 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 Gene3D G3DSA:3.30.420.40 6 308 2.0E-118 T 11-10-2018 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 Pfam PF02685 Glucokinase 6 315 5.3E-125 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 Gene3D G3DSA:3.40.367.20 100 299 2.0E-118 T 11-10-2018 BED32_15235 d21766f418f8b2da4c7f7e701a73bb4e 323 Hamap MF_00524 Glucokinase [glk]. 4 316 36.019 T 11-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 BED32_08405 dd282e1096d0fb500801a9521adc445a 280 SUPERFAMILY SSF53474 5 278 2.19E-87 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_08405 dd282e1096d0fb500801a9521adc445a 280 Gene3D G3DSA:3.40.50.1820 5 280 8.8E-91 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_08405 dd282e1096d0fb500801a9521adc445a 280 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 276 1.1E-117 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 BED32_08405 dd282e1096d0fb500801a9521adc445a 280 Pfam PF00756 Putative esterase 26 261 5.7E-67 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 Gene3D G3DSA:3.40.440.10 6 249 9.7E-106 T 11-10-2018 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 SUPERFAMILY SSF52540 3 431 1.7E-176 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19195 99ac987773aeb93571368779eb61a6c1 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 3.3E-177 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 215.375 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 SMART SM00788 4 425 1.7E-292 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 Gene3D G3DSA:1.10.300.10 102 201 9.7E-106 T 11-10-2018 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 430 3.2E-201 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 BED32_19195 99ac987773aeb93571368779eb61a6c1 432 Gene3D G3DSA:3.90.170.10 267 432 4.4E-70 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 SUPERFAMILY SSF111369 40 205 7.59E-24 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 Gene3D G3DSA:2.40.50.100 48 180 2.3E-74 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 Gene3D G3DSA:1.10.287.470 82 141 2.3E-74 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 Gene3D G3DSA:2.40.420.20 261 342 2.3E-74 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 51 239 1.7E-15 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 Gene3D G3DSA:2.40.30.170 36 260 2.3E-74 T 11-10-2018 BED32_18530 4f52da1b0c616aa1de69b3d3e080e56e 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 24 346 1.3E-96 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 Gene3D G3DSA:4.10.480.10 218 308 9.9E-30 T 11-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 53 198 3.1E-33 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PIRSF PIRSF000310 1 362 1.9E-133 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 4 359 2.2E-172 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 150 174 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 247 273 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 61 85 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 38 60 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 107 130 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 223 241 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 205 222 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 179 202 4.1E-68 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 Gene3D G3DSA:3.40.50.700 37 216 1.3E-68 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 218 296 1.0E-25 T 11-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 SUPERFAMILY SSF56770 40 296 2.24E-84 T 11-10-2018 BED32_04000 87e33112d13e0bcaf4f8f0fe1df043e6 371 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 7 31 3.8E-6 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 Gene3D G3DSA:2.40.10.240 64 163 4.3E-116 T 11-10-2018 BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 Pfam PF02547 Queuosine biosynthesis protein 4 343 7.6E-131 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 SUPERFAMILY SSF111337 1 343 3.79E-137 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 Gene3D G3DSA:3.40.1780.10 14 343 4.3E-116 T 11-10-2018 BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 344 47.004 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BED32_05910 a4ef83b5ba62bccf70049addf17696ad 362 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 343 1.8E-159 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 5.8E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 5.8E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 5.8E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 5.8E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 5.8E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Gene3D G3DSA:2.60.40.1730 15 194 8.6E-71 T 11-10-2018 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 SUPERFAMILY SSF63737 1 193 1.7E-49 T 11-10-2018 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 SUPERFAMILY SSF55486 204 450 1.1E-73 T 11-10-2018 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Pfam PF01433 Peptidase family M1 domain 208 439 9.6E-59 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 544 3.7E-34 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Gene3D G3DSA:1.25.50.10 546 870 9.6E-127 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Gene3D G3DSA:1.10.390.10 280 443 5.3E-65 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 869 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Gene3D G3DSA:2.60.40.1840 444 545 3.0E-36 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Gene3D G3DSA:1.10.1740.60 195 279 2.0E-40 T 11-10-2018 BED32_13540 9f4792c76ae9cf577e89b16290c32699 871 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 548 870 1.9E-122 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 Pfam PF00005 ABC transporter 269 423 3.0E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 SUPERFAMILY SSF52540 268 477 1.64E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 Pfam PF00005 ABC transporter 20 169 2.6E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 Gene3D G3DSA:3.40.50.300 255 490 6.4E-44 T 11-10-2018 BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 Gene3D G3DSA:3.40.50.300 1 235 1.2E-54 T 11-10-2018 BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 SUPERFAMILY SSF52540 3 228 7.84E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 SMART SM00382 29 217 2.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08815 843156a033d0c1a51d76ebbf980398d9 493 SMART SM00382 277 480 5.2E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01440 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_01440 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_02175 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_02175 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04960 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_04960 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_01155 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_01155 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_15905 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_15905 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_19825 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_19825 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_03310 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_03310 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04130 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_04130 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_14685 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_14685 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04470 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_04470 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_16305 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_16305 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_18215 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_18215 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_09990 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_09990 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_00975 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_00975 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_00515 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_00515 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_12690 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_12690 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_07305 8809df58127ac943c8a84f4978bd8048 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_07305 8809df58127ac943c8a84f4978bd8048 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_00795 d406a5cc7224a24586f02ddd8582d52a 85 Pfam PF13710 ACT domain 13 73 1.0E-25 T 11-10-2018 BED32_00795 d406a5cc7224a24586f02ddd8582d52a 85 Gene3D G3DSA:3.30.70.260 1 85 1.7E-7 T 11-10-2018 BED32_00795 d406a5cc7224a24586f02ddd8582d52a 85 SUPERFAMILY SSF55021 3 76 2.98E-12 T 11-10-2018 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 82 153 6.5E-11 T 11-10-2018 IPR032404 Two-component sensor protein CpxA, periplasmic domain BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 7.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 7.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 7.5E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 298 1.3E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Gene3D G3DSA:3.30.565.10 304 454 2.0E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 SMART SM00388 238 300 1.7E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 SUPERFAMILY SSF47384 224 299 1.51E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 SMART SM00387 345 455 1.3E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Pfam PF00672 HAMP domain 184 233 1.6E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Gene3D G3DSA:1.10.287.130 188 302 3.5E-37 T 11-10-2018 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 347 454 1.7E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 SMART SM00304 184 237 1.0E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 Gene3D G3DSA:3.30.450.210 27 147 7.8E-11 T 11-10-2018 IPR038515 CpxA, periplasmic domain superfamily BED32_20880 61f60c31ca146ff25fe1b23ec0e8ad46 458 SUPERFAMILY SSF55874 289 455 1.96E-39 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 Gene3D G3DSA:3.20.20.70 51 334 1.1E-89 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 Pfam PF04055 Radical SAM superfamily 118 264 2.4E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 PIRSF PIRSF004911 3 343 2.0E-119 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 Pfam PF13353 4Fe-4S single cluster domain 111 183 8.6E-7 T 11-10-2018 BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 SUPERFAMILY SSF102114 102 324 1.7E-28 T 11-10-2018 BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 TIGRFAM TIGR00238 TIGR00238: KamA family protein 4 328 8.6E-135 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase BED32_19330 be7d65ca3b6b613956676f45225c1ff4 343 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 15 335 2.6E-158 T 11-10-2018 IPR022462 Lysine-2,3-aminomutase-like BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 SUPERFAMILY SSF54909 62 151 1.74E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 Pfam PF01037 Lrp/AsnC ligand binding domain 68 141 1.7E-20 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 2 49 1.1E-16 T 11-10-2018 BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 Gene3D G3DSA:3.30.70.920 55 139 9.7E-24 T 11-10-2018 BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 Gene3D G3DSA:1.10.10.10 3 54 8.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 SUPERFAMILY SSF46785 2 92 2.63E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 SMART SM00344 2 111 4.6E-37 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 4.6E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_06135 e72ff755e8e0a8bdf3f5434c7da1d2f8 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 4.6E-9 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 Gene3D G3DSA:1.10.10.10 5 88 2.7E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 Pfam PF03466 LysR substrate binding domain 96 282 1.9E-11 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 SUPERFAMILY SSF46785 8 88 2.64E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 Gene3D G3DSA:3.40.190.10 169 270 8.0E-9 T 11-10-2018 BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 SUPERFAMILY SSF53850 104 281 6.6E-14 T 11-10-2018 BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 Gene3D G3DSA:3.40.190.10 112 280 8.0E-9 T 11-10-2018 BED32_10550 176094eb03b44b7b69122c5930b4a8cb 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 2.1E-12 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 SMART SM00448 2 112 6.6E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 Pfam PF00072 Response regulator receiver domain 4 112 3.9E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 SMART SM00862 156 232 1.4E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 SUPERFAMILY SSF52172 1 188 2.18E-31 T 11-10-2018 IPR011006 CheY-like superfamily BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 Gene3D G3DSA:3.40.50.2300 1 118 8.7E-28 T 11-10-2018 BED32_11240 9f6594d6518b05a5a60d0bc4fdbc6a91 242 Gene3D G3DSA:1.10.10.10 119 239 7.5E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06285 ac752b2824af9c2ce92c7dcc30e2796f 187 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 15 183 1.9E-71 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BED32_06285 ac752b2824af9c2ce92c7dcc30e2796f 187 Pfam PF00156 Phosphoribosyl transferase domain 35 178 3.5E-15 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BED32_06285 ac752b2824af9c2ce92c7dcc30e2796f 187 Gene3D G3DSA:3.40.50.2020 2 187 2.9E-68 T 11-10-2018 BED32_06285 ac752b2824af9c2ce92c7dcc30e2796f 187 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 15 184 38.624 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 BED32_06285 ac752b2824af9c2ce92c7dcc30e2796f 187 SUPERFAMILY SSF53271 18 184 4.54E-52 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SMART SM01058 476 573 1.5E-52 T 11-10-2018 IPR003711 CarD-like/TRCF domain BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Pfam PF02559 CarD-like/TRCF domain 477 572 1.5E-25 T 11-10-2018 IPR003711 CarD-like/TRCF domain BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF52540 779 987 5.75E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF143517 992 1144 2.22E-43 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SMART SM00982 1005 1105 1.6E-47 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF52540 520 780 1.93E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Pfam PF00271 Helicase conserved C-terminal domain 803 906 6.9E-18 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1079 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF52540 351 463 4.51E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 32 1140 27.878 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SMART SM00487 597 787 6.0E-33 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Pfam PF03461 TRCF domain 1007 1097 3.4E-27 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.40.50.11140 354 450 3.5E-35 T 11-10-2018 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.40.50.11180 24 334 2.3E-129 T 11-10-2018 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SMART SM00490 823 907 4.0E-19 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.40.50.300 539 778 6.5E-236 T 11-10-2018 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Pfam PF00270 DEAD/DEAH box helicase 602 762 5.9E-19 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.90.1150.50 1001 1148 1.4E-46 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF52540 7 341 4.65E-105 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.40.50.300 475 987 6.5E-236 T 11-10-2018 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 SUPERFAMILY SSF141259 468 545 3.27E-24 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:3.30.2060.10 128 213 2.3E-129 T 11-10-2018 BED32_13055 c43a5531abce8dd16870742f10c8105e 1148 Gene3D G3DSA:2.30.30.840 480 538 6.5E-236 T 11-10-2018 BED32_13365 181cc4c5d3273cfd1160cbb8b368199e 182 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 24 173 7.0E-42 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 BED32_13365 181cc4c5d3273cfd1160cbb8b368199e 182 SUPERFAMILY SSF52833 42 174 2.25E-32 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_13365 181cc4c5d3273cfd1160cbb8b368199e 182 Gene3D G3DSA:3.40.30.10 22 179 2.3E-37 T 11-10-2018 BED32_13365 181cc4c5d3273cfd1160cbb8b368199e 182 Pfam PF08534 Redoxin 40 163 1.2E-14 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BED32_13365 181cc4c5d3273cfd1160cbb8b368199e 182 ProSitePatterns PS00194 Thioredoxin family active site. 67 85 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_20390 a2db1da989c5fc5e74ba6c2aa9eb2253 399 Gene3D G3DSA:1.25.40.10 76 396 2.0E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_20390 a2db1da989c5fc5e74ba6c2aa9eb2253 399 SUPERFAMILY SSF48452 158 388 5.8E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_20390 a2db1da989c5fc5e74ba6c2aa9eb2253 399 Pfam PF07219 HemY protein N-terminus 26 132 2.5E-34 T 11-10-2018 IPR010817 HemY, N-terminal BED32_20390 a2db1da989c5fc5e74ba6c2aa9eb2253 399 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 3 386 5.3E-136 T 11-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 BED32_02525 dcfd0cfb185646cd727607eb7a8232fa 133 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 60 127 3.2E-18 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 BED32_02525 dcfd0cfb185646cd727607eb7a8232fa 133 Gene3D G3DSA:3.30.1380.10 11 127 3.4E-23 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_02525 dcfd0cfb185646cd727607eb7a8232fa 133 SUPERFAMILY SSF55166 8 129 2.51E-30 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_13425 9a2606c609a11195ea5079287c5bab64 105 Gene3D G3DSA:2.30.30.390 1 105 1.3E-39 T 11-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 BED32_13425 9a2606c609a11195ea5079287c5bab64 105 Hamap MF_01194 Heat shock protein HspQ [hspQ]. 1 105 37.27 T 11-10-2018 IPR022866 Heat shock protein HspQ BED32_13425 9a2606c609a11195ea5079287c5bab64 105 SMART SM00992 3 102 2.0E-37 T 11-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 BED32_13425 9a2606c609a11195ea5079287c5bab64 105 SUPERFAMILY SSF141255 4 96 5.1E-30 T 11-10-2018 IPR036623 Hemimethylated DNA-binding domain superfamily GO:0003677 BED32_13425 9a2606c609a11195ea5079287c5bab64 105 TIGRFAM TIGR02097 yccV: hemimethylated DNA binding domain 4 102 2.1E-32 T 11-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 BED32_13425 9a2606c609a11195ea5079287c5bab64 105 Pfam PF08755 Hemimethylated DNA-binding protein YccV like 5 96 2.9E-19 T 11-10-2018 IPR011722 Hemimethylated DNA-binding domain GO:0003677 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 235 289 1.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 337 439 3.8E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 Gene3D G3DSA:1.10.287.130 178 288 7.3E-21 T 11-10-2018 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 SUPERFAMILY SSF55874 292 442 1.57E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 SUPERFAMILY SSF47384 217 291 8.63E-11 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 Gene3D G3DSA:3.30.565.10 294 443 2.3E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 395 9.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 9.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 9.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 SMART SM00388 233 293 2.8E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 SMART SM00387 332 440 3.4E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 SMART SM00304 180 232 1.4E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_01555 bc7070be121629cfd4d58ec338c717b0 450 Pfam PF00672 HAMP domain 182 225 1.2E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_15135 62a9a0e75f2d16c70b911b5a6b1e1b41 268 Gene3D G3DSA:3.40.50.300 8 265 3.3E-63 T 11-10-2018 BED32_15135 62a9a0e75f2d16c70b911b5a6b1e1b41 268 SUPERFAMILY SSF52540 9 246 4.99E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15135 62a9a0e75f2d16c70b911b5a6b1e1b41 268 SMART SM00382 35 224 1.4E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15135 62a9a0e75f2d16c70b911b5a6b1e1b41 268 Pfam PF00005 ABC transporter 27 176 4.9E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_22035 f046a01e765253ef6b68cfc91a6055d5 907 Gene3D G3DSA:2.60.40.10 7 116 2.6E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22035 f046a01e765253ef6b68cfc91a6055d5 907 Gene3D G3DSA:2.60.40.10 250 370 6.5E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22035 f046a01e765253ef6b68cfc91a6055d5 907 SUPERFAMILY SSF49373 125 214 1.18E-6 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22035 f046a01e765253ef6b68cfc91a6055d5 907 SUPERFAMILY SSF49373 14 107 9.81E-6 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22035 f046a01e765253ef6b68cfc91a6055d5 907 Gene3D G3DSA:2.60.40.10 126 219 8.5E-7 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_19200 805dcf9786f403e49c65127ae06768aa 66 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 60 1.1E-21 T 11-10-2018 IPR019201 Protein of unknown function DUF2065 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 489 554 1.1E-10 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 312 482 1.3E-36 T 11-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 SUPERFAMILY SSF56762 210 554 4.71E-108 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 105 150 1.0E-13 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Gene3D G3DSA:3.30.460.80 17 152 1.4E-9 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Gene3D G3DSA:1.10.645.20 198 554 5.2E-112 T 11-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Pfam PF00374 Nickel-dependent hydrogenase 235 303 2.6E-13 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 42 170 4.6E-23 T 11-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 SUPERFAMILY SSF143243 16 211 1.05E-44 T 11-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08490 fe743b660666f6eabd6ed77c7134bd5e 586 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 233 244 - T 11-10-2018 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14295 572b30f57d44602296d05417709c1c11 508 Pfam PF02378 Phosphotransferase system, EIIC 107 425 1.6E-30 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_14295 572b30f57d44602296d05417709c1c11 508 Pfam PF00367 phosphotransferase system, EIIB 10 43 4.4E-13 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_14295 572b30f57d44602296d05417709c1c11 508 SUPERFAMILY SSF55604 9 83 7.59E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_14295 572b30f57d44602296d05417709c1c11 508 Gene3D G3DSA:3.30.1360.60 2 79 1.4E-24 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 SUPERFAMILY SSF49493 129 225 6.8E-17 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 PRINTS PR00625 DnaJ domain signature 7 25 1.3E-20 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 PRINTS PR00625 DnaJ domain signature 41 61 1.3E-20 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 PRINTS PR00625 DnaJ domain signature 61 80 1.3E-20 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 PRINTS PR00625 DnaJ domain signature 25 40 1.3E-20 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 SUPERFAMILY SSF46565 1 93 1.26E-28 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Gene3D G3DSA:2.60.260.20 129 213 5.3E-20 T 11-10-2018 BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Gene3D G3DSA:1.10.287.110 2 124 1.1E-32 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 SUPERFAMILY SSF49493 218 301 6.41E-18 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Gene3D G3DSA:1.20.5.460 290 317 1.8E-9 T 11-10-2018 BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 11-10-2018 IPR018253 DnaJ domain, conserved site BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Pfam PF00226 DnaJ domain 5 66 4.2E-24 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Pfam PF01556 DnaJ C terminal domain 134 290 1.5E-33 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 SMART SM00271 4 61 5.5E-27 T 11-10-2018 IPR001623 DnaJ domain BED32_17250 00b7673cc5a8da6646968a42bbe3880f 317 Gene3D G3DSA:2.60.260.20 214 289 1.2E-29 T 11-10-2018 BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Pfam PF04225 Opacity-associated protein A LysM-like domain 86 149 2.3E-6 T 11-10-2018 IPR007340 Opacity-associated protein A BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Pfam PF01551 Peptidase family M23 302 396 3.8E-34 T 11-10-2018 IPR016047 Peptidase M23 BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 SMART SM00257 87 132 8.3E-5 T 11-10-2018 IPR018392 LysM domain BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Gene3D G3DSA:2.70.70.10 273 402 2.8E-49 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 SUPERFAMILY SSF51261 154 397 2.82E-70 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Gene3D G3DSA:3.10.450.350 174 271 1.4E-30 T 11-10-2018 BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Gene3D G3DSA:3.10.450.350 75 173 4.4E-12 T 11-10-2018 BED32_10215 f5fb7a2ff328952a8a410cb382293521 429 Pfam PF08525 Opacity-associated protein A N-terminal motif 3 30 5.7E-8 T 11-10-2018 IPR013731 Opacity-associated protein A, N-terminal BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 Pfam PF00294 pfkB family carbohydrate kinase 4 299 4.8E-69 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 Gene3D G3DSA:3.40.1190.20 1 311 3.8E-95 T 11-10-2018 IPR029056 Ribokinase-like BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 28 52 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 PRINTS PR00990 Ribokinase signature 176 191 6.3E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 PRINTS PR00990 Ribokinase signature 216 227 6.3E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 PRINTS PR00990 Ribokinase signature 23 42 6.3E-5 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 SUPERFAMILY SSF53613 2 307 4.05E-79 T 11-10-2018 IPR029056 Ribokinase-like BED32_18435 5b09c5cae63bb110f316ef6b47b418c7 311 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 SUPERFAMILY SSF56784 1 214 2.23E-27 T 11-10-2018 IPR036412 HAD-like superfamily BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 1.3E-47 T 11-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 Gene3D G3DSA:1.20.1440.100 15 87 3.5E-64 T 11-10-2018 BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 Gene3D G3DSA:3.40.50.1000 3 213 3.5E-64 T 11-10-2018 IPR023214 HAD superfamily BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 188 6.9E-26 T 11-10-2018 BED32_14005 cd0266d6f003ebda57ed510500c2260f 219 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 1.3E-33 T 11-10-2018 BED32_12420 91002c381e11bec18b9d7064c38618ee 289 PIRSF PIRSF005215 1 289 2.7E-145 T 11-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 BED32_12420 91002c381e11bec18b9d7064c38618ee 289 Pfam PF03848 Tellurite resistance protein TehB 93 285 1.5E-105 T 11-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain BED32_12420 91002c381e11bec18b9d7064c38618ee 289 SUPERFAMILY SSF53335 70 277 1.69E-32 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_12420 91002c381e11bec18b9d7064c38618ee 289 Pfam PF09313 Domain of unknown function (DUF1971) 11 91 1.5E-28 T 11-10-2018 IPR015392 Domain of unknown function DUF1971 BED32_12420 91002c381e11bec18b9d7064c38618ee 289 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 51 288 3.4E-109 T 11-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 BED32_12420 91002c381e11bec18b9d7064c38618ee 289 Gene3D G3DSA:3.40.50.150 110 289 3.6E-42 T 11-10-2018 BED32_12420 91002c381e11bec18b9d7064c38618ee 289 Gene3D G3DSA:2.60.120.10 3 109 3.0E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_12420 91002c381e11bec18b9d7064c38618ee 289 SUPERFAMILY SSF51197 5 104 2.06E-34 T 11-10-2018 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 8.1E-64 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 51.039 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 Gene3D G3DSA:3.90.226.10 4 319 3.5E-123 T 11-10-2018 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 5.6E-172 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.2E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_16810 19e928e90fc0821e1b91e139b80cab57 319 SUPERFAMILY SSF52096 5 318 1.79E-105 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_20140 66e2f819ab05055c332e9c8497a69192 233 PIRSF PIRSF039137 1 233 5.0E-102 T 11-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 BED32_20140 66e2f819ab05055c332e9c8497a69192 233 SUPERFAMILY SSF52540 2 230 1.28E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20140 66e2f819ab05055c332e9c8497a69192 233 Gene3D G3DSA:3.40.50.300 1 233 1.2E-65 T 11-10-2018 BED32_20140 66e2f819ab05055c332e9c8497a69192 233 Pfam PF00005 ABC transporter 17 161 9.8E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_20140 66e2f819ab05055c332e9c8497a69192 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20140 66e2f819ab05055c332e9c8497a69192 233 SMART SM00382 26 212 5.0E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 Gene3D G3DSA:1.20.1250.20 258 456 2.9E-12 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 Gene3D G3DSA:1.20.1720.10 8 236 1.5E-45 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 Pfam PF07690 Major Facilitator Superfamily 11 401 3.1E-46 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 Hamap MF_01577 Putative multidrug resistance protein MdtD [mdtD]. 1 461 41.915 T 11-10-2018 IPR023721 Multidrug resistance protein MdtD, putative BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 11 428 6.4E-69 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 10 34 6.5E-9 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 392 411 6.5E-9 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 195 213 6.5E-9 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 101 121 6.5E-9 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 PRINTS PR01036 Tetracycline resistance protein TetB signature 131 155 6.5E-9 T 11-10-2018 BED32_15765 87e03ee7e6fe8cb027b5e0aa7358637c 469 SUPERFAMILY SSF103473 6 448 3.79E-59 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_08390 d0159cb39aa15d46dca4250aa79dd2dc 420 Gene3D G3DSA:2.40.420.20 344 405 9.3E-31 T 11-10-2018 BED32_08390 d0159cb39aa15d46dca4250aa79dd2dc 420 Gene3D G3DSA:2.40.30.170 71 342 9.3E-31 T 11-10-2018 BED32_08390 d0159cb39aa15d46dca4250aa79dd2dc 420 Gene3D G3DSA:1.10.287.470 108 235 9.3E-31 T 11-10-2018 BED32_08390 d0159cb39aa15d46dca4250aa79dd2dc 420 Gene3D G3DSA:2.40.50.100 74 269 9.3E-31 T 11-10-2018 BED32_08390 d0159cb39aa15d46dca4250aa79dd2dc 420 Pfam PF13437 HlyD family secretion protein 235 319 4.1E-9 T 11-10-2018 BED32_04300 9ad286712189d8bf817975918559048b 375 SUPERFAMILY SSF48150 21 243 3.14E-78 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 Gene3D G3DSA:1.10.340.30 39 150 5.4E-88 T 11-10-2018 BED32_04300 9ad286712189d8bf817975918559048b 375 Pfam PF00633 Helix-hairpin-helix motif 118 145 3.0E-9 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 SMART SM00525 209 229 7.6E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 SMART SM00478 57 208 3.4E-51 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 Gene3D G3DSA:3.90.79.10 240 369 7.2E-12 T 11-10-2018 BED32_04300 9ad286712189d8bf817975918559048b 375 Gene3D G3DSA:1.10.1670.10 28 229 5.4E-88 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 SUPERFAMILY SSF55811 238 362 4.05E-23 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_04300 9ad286712189d8bf817975918559048b 375 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 210 226 6.1E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 210 226 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 54 185 7.7E-20 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 ProSitePatterns PS01155 Endonuclease III family signature. 120 149 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 BED32_04300 9ad286712189d8bf817975918559048b 375 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 23 294 1.8E-122 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 BED32_04300 9ad286712189d8bf817975918559048b 375 Pfam PF14815 NUDIX domain 252 360 5.5E-24 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 SUPERFAMILY SSF51261 507 658 1.31E-50 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 515 638 2.6E-46 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 515 635 1.2E-46 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 Pfam PF02378 Phosphotransferase system, EIIC 1 310 1.6E-76 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 577 589 - T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 Gene3D G3DSA:2.70.70.10 503 662 1.5E-52 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 SUPERFAMILY SSF55604 408 481 7.32E-18 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 1 479 3.6E-197 T 11-10-2018 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 Pfam PF00367 phosphotransferase system, EIIB 411 443 9.5E-12 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 Gene3D G3DSA:3.30.1360.60 404 484 2.5E-22 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 421 438 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_07565 de0519b9320b7c47c88ae5f2b22316ba 663 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 369 468 9.4E-20 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BED32_19385 50f3d8d09b1d48eebd63db213e2b207f 202 SUPERFAMILY SSF46689 11 77 1.74E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_19385 50f3d8d09b1d48eebd63db213e2b207f 202 Gene3D G3DSA:1.10.357.10 6 196 1.1E-26 T 11-10-2018 BED32_19385 50f3d8d09b1d48eebd63db213e2b207f 202 SUPERFAMILY SSF48498 85 184 7.12E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_19385 50f3d8d09b1d48eebd63db213e2b207f 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 60 1.4E-5 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 SUPERFAMILY SSF52833 473 584 2.03E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 ProSitePatterns PS00194 Thioredoxin family active site. 494 512 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Pfam PF13899 Thioredoxin-like 484 559 4.8E-13 T 11-10-2018 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 586 40.498 T 11-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 193 398 1.3E-20 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Gene3D G3DSA:3.40.30.10 462 585 1.2E-36 T 11-10-2018 BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Pfam PF11412 Disulphide bond corrector protein DsbC 39 149 2.1E-33 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 Gene3D G3DSA:2.60.40.1250 32 167 2.4E-44 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BED32_19375 cd7b1984920d398dbb0b34c3ffd041d9 587 SUPERFAMILY SSF74863 38 151 3.27E-41 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily BED32_19015 18ee1af44a468da1c4cdd671caf5799a 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.4E-43 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19015 18ee1af44a468da1c4cdd671caf5799a 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.0E-38 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19015 18ee1af44a468da1c4cdd671caf5799a 103 SUPERFAMILY SSF141091 1 102 5.76E-37 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19015 18ee1af44a468da1c4cdd671caf5799a 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 26.825 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19015 18ee1af44a468da1c4cdd671caf5799a 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Gene3D G3DSA:3.30.565.10 537 696 1.8E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Pfam PF00072 Response regulator receiver domain 835 944 1.1E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SMART SM00388 471 536 1.1E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SUPERFAMILY SSF52172 832 951 4.27E-39 T 11-10-2018 IPR011006 CheY-like superfamily BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Pfam PF09456 RcsC Alpha-Beta-Loop (ABL) 717 806 1.8E-32 T 11-10-2018 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal GO:0000160|GO:0004673|GO:0005524|GO:0005886|GO:0006355|GO:0016021|GO:0018106 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Gene3D G3DSA:3.40.50.2300 828 955 5.5E-39 T 11-10-2018 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SUPERFAMILY SSF47384 455 537 7.06E-19 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SUPERFAMILY SSF55874 525 694 1.22E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SUPERFAMILY SSF52172 709 823 6.96E-39 T 11-10-2018 IPR011006 CheY-like superfamily BED32_14400 d743ab913891e455d869abcf55c32a7a 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 637 647 8.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 654 672 8.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 633 8.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 PRINTS PR00344 Bacterial sensor protein C-terminal signature 678 691 8.1E-16 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Pfam PF00512 His Kinase A (phospho-acceptor) domain 471 535 8.1E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Gene3D G3DSA:1.10.287.130 448 534 5.9E-23 T 11-10-2018 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Gene3D G3DSA:3.40.50.10970 715 827 4.9E-12 T 11-10-2018 IPR038388 RcsC, C-terminal domain superfamily BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 583 692 6.3E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_14400 d743ab913891e455d869abcf55c32a7a 955 Hamap MF_00979 Sensor histidine kinase RcsC [rcsC]. 24 949 27.446 T 11-10-2018 IPR030856 Sensor histidine kinase RcsC GO:0000155|GO:0000160|GO:0016021 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SMART SM00448 833 944 6.1E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_14400 d743ab913891e455d869abcf55c32a7a 955 SMART SM00387 583 694 4.9E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_11180 d405fd7940c755f322dc44445ec65001 330 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 328 5.3E-33 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BED32_11180 d405fd7940c755f322dc44445ec65001 330 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 2.6E-54 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BED32_11180 d405fd7940c755f322dc44445ec65001 330 Gene3D G3DSA:3.40.50.720 102 297 9.6E-140 T 11-10-2018 BED32_11180 d405fd7940c755f322dc44445ec65001 330 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_11180 d405fd7940c755f322dc44445ec65001 330 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_11180 d405fd7940c755f322dc44445ec65001 330 Gene3D G3DSA:3.40.50.720 2 317 9.6E-140 T 11-10-2018 BED32_11180 d405fd7940c755f322dc44445ec65001 330 SUPERFAMILY SSF52283 2 135 1.06E-44 T 11-10-2018 BED32_11180 d405fd7940c755f322dc44445ec65001 330 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BED32_11180 d405fd7940c755f322dc44445ec65001 330 SUPERFAMILY SSF51735 102 298 2.35E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_03365 c539662e4545649657584db2b3eeab87 302 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 297 3.0E-131 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BED32_03365 c539662e4545649657584db2b3eeab87 302 SUPERFAMILY SSF53697 8 251 6.9E-72 T 11-10-2018 BED32_03365 c539662e4545649657584db2b3eeab87 302 Gene3D G3DSA:1.10.8.1080 221 299 7.6E-30 T 11-10-2018 BED32_03365 c539662e4545649657584db2b3eeab87 302 Gene3D G3DSA:3.40.50.10490 2 220 5.9E-81 T 11-10-2018 BED32_03365 c539662e4545649657584db2b3eeab87 302 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 11-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 BED32_03365 c539662e4545649657584db2b3eeab87 302 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 42.655 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BED32_03365 c539662e4545649657584db2b3eeab87 302 Pfam PF13580 SIS domain 43 167 1.3E-12 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 Gene3D G3DSA:3.40.30.10 1 82 7.4E-30 T 11-10-2018 BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 9.0E-37 T 11-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 PRINTS PR00160 Glutaredoxin signature 4 22 8.7E-18 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 PRINTS PR00160 Glutaredoxin signature 60 73 8.7E-18 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 PRINTS PR00160 Glutaredoxin signature 46 59 8.7E-18 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 SUPERFAMILY SSF52833 1 82 4.5E-30 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_20910 7a21f6254473d9fd2ff1c4f3f25a55ec 82 Pfam PF00462 Glutaredoxin 4 63 1.0E-25 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BED32_13335 3fcf224741b5197033db896f494672b9 575 Pfam PF02080 TrkA-C domain 420 483 2.7E-12 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_13335 3fcf224741b5197033db896f494672b9 575 Gene3D G3DSA:3.30.70.1450 410 487 4.9E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_13335 3fcf224741b5197033db896f494672b9 575 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 575 49.505 T 11-10-2018 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 BED32_13335 3fcf224741b5197033db896f494672b9 575 Gene3D G3DSA:1.20.1530.20 7 391 3.9E-17 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily BED32_13335 3fcf224741b5197033db896f494672b9 575 SMART SM01091 492 572 1.9E-22 T 11-10-2018 IPR005170 Transporter-associated domain BED32_13335 3fcf224741b5197033db896f494672b9 575 Pfam PF03471 Transporter associated domain 493 571 1.8E-15 T 11-10-2018 IPR005170 Transporter-associated domain BED32_13335 3fcf224741b5197033db896f494672b9 575 SUPERFAMILY SSF116726 419 483 3.01E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_13335 3fcf224741b5197033db896f494672b9 575 SUPERFAMILY SSF56176 497 570 2.34E-13 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_13335 3fcf224741b5197033db896f494672b9 575 Gene3D G3DSA:3.30.465.10 488 570 1.4E-11 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_13335 3fcf224741b5197033db896f494672b9 575 Pfam PF00999 Sodium/hydrogen exchanger family 15 387 3.8E-57 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 SUPERFAMILY SSF46992 3 86 3.53E-32 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 7.4E-34 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.616 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 Pfam PF01649 Ribosomal protein S20 2 84 6.5E-28 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 87 3.0E-36 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18160 905c9dffa6c1b5a45c881e81edf535af 87 Gene3D G3DSA:1.20.58.110 1 87 1.9E-31 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SMART SM00322 552 617 3.3E-12 T 11-10-2018 IPR004087 K Homology domain GO:0003676 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF54791 554 621 2.72E-17 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF54211 5 144 7.59E-49 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 320 8.7E-26 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Gene3D G3DSA:2.40.50.140 622 693 7.9E-29 T 11-10-2018 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 691 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF00575 S1 RNA binding domain 619 690 7.3E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Gene3D G3DSA:3.30.230.70 4 235 5.3E-78 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF54211 293 488 4.71E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF46915 238 320 2.62E-19 T 11-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SMART SM00316 620 690 1.1E-26 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF01138 3' exoribonuclease family, domain 1 16 144 3.0E-18 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF01138 3' exoribonuclease family, domain 1 324 456 9.1E-22 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF55666 145 234 3.37E-30 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF50249 608 692 4.45E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF00013 KH domain 556 614 5.6E-9 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Gene3D G3DSA:3.30.230.70 236 549 5.3E-114 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF03725 3' exoribonuclease family, domain 2 147 210 9.3E-14 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Pfam PF03725 3' exoribonuclease family, domain 2 460 527 8.7E-6 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 3 693 30.314 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 Gene3D G3DSA:3.30.1370.10 550 621 1.0E-18 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 PIRSF PIRSF005499 2 705 1.0E-298 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 BED32_18905 903271d54bf10fbacd390dd9a34492a0 706 SUPERFAMILY SSF55666 450 548 5.33E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SMART SM00267 225 392 2.2E-56 T 11-10-2018 IPR000160 GGDEF domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Gene3D G3DSA:3.30.450.20 116 232 3.1E-13 T 11-10-2018 BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Pfam PF00563 EAL domain 409 642 2.9E-67 T 11-10-2018 IPR001633 EAL domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 114 232 3.3E-11 T 11-10-2018 IPR000014 PAS domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Pfam PF00990 Diguanylate cyclase, GGDEF domain 236 387 7.8E-41 T 11-10-2018 IPR000160 GGDEF domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SUPERFAMILY SSF55785 123 233 2.42E-13 T 11-10-2018 IPR035965 PAS domain superfamily BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 234 390 7.2E-34 T 11-10-2018 IPR000160 GGDEF domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Gene3D G3DSA:3.30.70.270 233 404 6.1E-53 T 11-10-2018 BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Pfam PF13426 PAS domain 122 224 1.4E-7 T 11-10-2018 IPR000014 PAS domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SMART SM00052 402 647 1.7E-112 T 11-10-2018 IPR001633 EAL domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SUPERFAMILY SSF141868 409 655 7.72E-86 T 11-10-2018 IPR035919 EAL domain superfamily BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 Gene3D G3DSA:3.20.20.450 405 658 2.7E-92 T 11-10-2018 IPR035919 EAL domain superfamily BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SMART SM00091 110 176 2.6E-4 T 11-10-2018 IPR000014 PAS domain BED32_21135 e6f54f5d30212cf33bd20e1d1b2be5a4 662 SUPERFAMILY SSF55073 242 394 4.71E-42 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 Gene3D G3DSA:2.40.160.20 24 187 3.3E-57 T 11-10-2018 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 51 59 - T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 Pfam PF13505 Outer membrane protein beta-barrel domain 11 187 5.7E-31 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 50 62 2.3E-35 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 148 169 2.3E-35 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 175 186 2.3E-35 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 93 116 2.3E-35 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 SUPERFAMILY SSF56925 29 187 1.99E-28 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_15575 302d2dd8d0c7efb7fc3ed245bd09d057 187 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 179 187 - T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08865 4db9132c15475411b29368d0a68a9d67 371 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 362 9.5E-109 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BED32_08865 4db9132c15475411b29368d0a68a9d67 371 Gene3D G3DSA:3.40.50.1970 1 165 1.8E-44 T 11-10-2018 BED32_08865 4db9132c15475411b29368d0a68a9d67 371 SUPERFAMILY SSF56796 2 369 6.02E-107 T 11-10-2018 BED32_08865 4db9132c15475411b29368d0a68a9d67 371 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 154 182 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_08865 4db9132c15475411b29368d0a68a9d67 371 Gene3D G3DSA:1.20.1090.10 167 371 6.0E-64 T 11-10-2018 BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 SUPERFAMILY SSF49503 34 168 3.97E-31 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Pfam PF00394 Multicopper oxidase 219 290 3.3E-6 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Pfam PF07732 Multicopper oxidase 55 166 1.7E-32 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Gene3D G3DSA:2.60.40.420 176 326 7.7E-44 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 SUPERFAMILY SSF49503 392 528 4.95E-26 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 SUPERFAMILY SSF49503 172 291 3.33E-31 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 ProSitePatterns PS00080 Multicopper oxidases signature 2. 511 522 - T 11-10-2018 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Gene3D G3DSA:2.60.40.420 30 175 8.1E-45 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Gene3D G3DSA:2.60.40.420 346 529 2.8E-49 T 11-10-2018 IPR008972 Cupredoxin BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Pfam PF07731 Multicopper oxidase 414 529 3.0E-24 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 BED32_17700 afbf74f127fd5e6aa7790c891ed3b3f3 530 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 1 22 3.0E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BED32_12485 bd7caf8b0a855d1ef076086f408c3534 207 SMART SM01007 8 187 3.6E-58 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_12485 bd7caf8b0a855d1ef076086f408c3534 207 SUPERFAMILY SSF53639 1 206 7.26E-62 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_12485 bd7caf8b0a855d1ef076086f408c3534 207 Gene3D G3DSA:3.40.225.10 2 207 1.4E-59 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_12485 bd7caf8b0a855d1ef076086f408c3534 207 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 185 1.2E-43 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82714 192 275 8.37E-17 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Pfam PF00873 AcrB/AcrD/AcrF family 13 1022 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.2090.10 188 278 8.9E-297 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.70.1440 663 861 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.2090.10 715 803 8.9E-297 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:1.20.1640.10 513 1019 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82693 565 662 1.46E-15 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.70.1320 144 335 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82693 49 142 8.63E-23 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.70.1430 49 811 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82866 799 1025 3.92E-47 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82693 146 333 3.4E-21 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:1.20.1640.10 19 512 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 19 43 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 47 65 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 2.6E-81 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82866 299 498 1.31E-46 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Gene3D G3DSA:3.30.70.1430 567 662 8.9E-297 T 11-10-2018 BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 SUPERFAMILY SSF82714 719 802 8.24E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15755 9ea908b253eeccba88904b714ace0c1d 1047 Hamap MF_01423 Multidrug resistance protein MdtB [mdtB]. 1 1037 35.105 T 11-10-2018 IPR022831 Multidrug resistance protein MdtB BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Gene3D G3DSA:1.10.486.10 382 538 1.1E-138 T 11-10-2018 BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Gene3D G3DSA:3.40.50.300 281 636 1.1E-138 T 11-10-2018 BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 718 0.0 T 11-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Gene3D G3DSA:3.40.50.300 10 274 1.9E-105 T 11-10-2018 BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Gene3D G3DSA:1.10.10.160 114 187 1.9E-105 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 SUPERFAMILY SSF52540 4 642 5.32E-182 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 8.6E-76 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BED32_20330 6dcd6ab128ea1707b8d6fd91d96e56c3 720 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 6.6E-76 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BED32_15590 9701e5bfedde2923205c6a2d4dba857d 334 Pfam PF01548 Transposase 7 147 1.0E-17 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_15590 9701e5bfedde2923205c6a2d4dba857d 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.3E-21 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_16665 9701e5bfedde2923205c6a2d4dba857d 334 Pfam PF01548 Transposase 7 147 1.0E-17 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_16665 9701e5bfedde2923205c6a2d4dba857d 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.3E-21 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 SUPERFAMILY SSF48179 205 301 2.79E-32 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 298 3.2E-37 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 322 426 1.5E-30 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 181 3.6E-63 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Gene3D G3DSA:3.40.50.720 1 204 9.7E-76 T 11-10-2018 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 PIRSF PIRSF000124 1 441 1.0E-145 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Gene3D G3DSA:1.20.5.100 205 235 1.4E-18 T 11-10-2018 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 SMART SM00984 322 426 1.6E-51 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 Gene3D G3DSA:3.40.50.720 237 449 2.5E-76 T 11-10-2018 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 422 1.5E-135 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 PIRSF PIRSF500134 1 444 3.1E-185 T 11-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 SUPERFAMILY SSF51735 1 197 7.8E-54 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_12140 1362c687572cb6d857671c58bcfe54c3 449 SUPERFAMILY SSF52413 311 437 4.58E-39 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 1.0E-46 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 SUPERFAMILY SSF54111 1 99 7.19E-41 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 2.9E-43 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 Gene3D G3DSA:3.30.280.10 1 100 3.8E-43 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 PIRSF PIRSF001223 1 100 3.8E-48 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 Pfam PF00547 Urease, gamma subunit 1 99 2.6E-42 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16490 a3146419f9bca7692336c5cdbe6c0346 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 32.942 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 SUPERFAMILY SSF53335 77 390 7.85E-71 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 Gene3D G3DSA:3.40.50.150 181 394 7.3E-69 T 11-10-2018 BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 SUPERFAMILY SSF88697 2 70 6.96E-16 T 11-10-2018 IPR015947 PUA-like superfamily BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 Gene3D G3DSA:3.30.750.80 71 179 2.7E-38 T 11-10-2018 BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 SMART SM00359 1 86 3.0E-16 T 11-10-2018 IPR002478 PUA domain GO:0003723 BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 Gene3D G3DSA:2.30.130.10 1 70 3.3E-29 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 BED32_13420 18ed5b1b39a19d214ea47d1063c6c762 394 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 108 368 1.0E-28 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 341 5.9E-36 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 Gene3D G3DSA:3.40.50.2000 9 161 4.4E-123 T 11-10-2018 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 9 145 4.3E-47 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 354 35.442 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 Gene3D G3DSA:3.40.50.2000 162 320 4.4E-123 T 11-10-2018 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 2.2E-112 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17880 cea2f80019f958e6b57dc8d41b9800b1 355 SUPERFAMILY SSF53756 6 352 1.5E-127 T 11-10-2018 BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 SMART SM00345 18 77 9.3E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 Gene3D G3DSA:1.20.120.530 101 227 3.7E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 77 4.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 SMART SM00895 106 227 4.9E-17 T 11-10-2018 IPR011711 GntR, C-terminal BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 Pfam PF07729 FCD domain 110 221 2.8E-21 T 11-10-2018 IPR011711 GntR, C-terminal BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 Gene3D G3DSA:1.10.10.10 1 79 3.9E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.6E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 SUPERFAMILY SSF46785 10 81 1.11E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_21345 fd8e259608624ff7314d1838d90a0be9 229 SUPERFAMILY SSF48008 107 222 1.46E-21 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_02180 0d37b7dce27cddef467686bd0f37778f 296 SUPERFAMILY SSF161098 8 296 1.5E-69 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02180 0d37b7dce27cddef467686bd0f37778f 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 106 286 6.4E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_02180 0d37b7dce27cddef467686bd0f37778f 296 Gene3D G3DSA:1.10.3720.10 1 283 5.3E-73 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10360 324cbf311aee54fcf4322a59a588d825 211 Pfam PF14834 Glutathione S-transferase, C-terminal domain 95 211 3.8E-49 T 11-10-2018 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|KEGG: 00983+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 BED32_10360 324cbf311aee54fcf4322a59a588d825 211 SUPERFAMILY SSF47616 91 209 4.09E-10 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_10360 324cbf311aee54fcf4322a59a588d825 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 15 86 1.4E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_10360 324cbf311aee54fcf4322a59a588d825 211 SUPERFAMILY SSF52833 6 113 1.58E-17 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_10360 324cbf311aee54fcf4322a59a588d825 211 Gene3D G3DSA:1.20.1050.10 90 198 3.0E-81 T 11-10-2018 BED32_10360 324cbf311aee54fcf4322a59a588d825 211 Gene3D G3DSA:3.40.30.10 8 205 3.0E-81 T 11-10-2018 BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 Gene3D G3DSA:2.40.30.70 25 147 2.5E-48 T 11-10-2018 IPR036414 YaeB, N-terminal domain superfamily BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 SUPERFAMILY SSF118196 1 230 8.24E-85 T 11-10-2018 IPR036413 YaeB-like superfamily BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 ProSitePatterns PS01318 TsaA-like domain signature. 87 98 - T 11-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 Gene3D G3DSA:3.30.2310.10 148 231 3.7E-22 T 11-10-2018 BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 Pfam PF01980 Uncharacterised protein family UPF0066 21 142 2.0E-39 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain BED32_16755 8cc4e6b4bcb05b9114d2dbe766305b62 235 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 149 9.3E-58 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain BED32_05485 4a559392b9f08f855e57ab932717de91 395 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 15 183 8.3E-51 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 BED32_05485 4a559392b9f08f855e57ab932717de91 395 PIRSF PIRSF029215 1 390 3.0E-34 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 Gene3D G3DSA:3.30.920.10 1 106 6.8E-42 T 11-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 SUPERFAMILY SSF55387 1 105 4.01E-39 T 11-10-2018 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 105 29.011 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 11-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 Pfam PF01491 Frataxin-like domain 1 102 9.4E-29 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 SMART SM01219 1 106 1.3E-54 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_20360 ab9a7b4c278788f35d23ebdd66efe63f 106 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 105 1.9E-42 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_14095 17e22647e54f1009f5567bf571a21fda 377 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_14095 17e22647e54f1009f5567bf571a21fda 377 Gene3D G3DSA:3.30.1340.10 285 370 1.1E-25 T 11-10-2018 IPR035895 HPr-like superfamily BED32_14095 17e22647e54f1009f5567bf571a21fda 377 SUPERFAMILY SSF55804 2 140 3.01E-38 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_14095 17e22647e54f1009f5567bf571a21fda 377 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 326 341 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BED32_14095 17e22647e54f1009f5567bf571a21fda 377 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 139 2.2E-29 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_14095 17e22647e54f1009f5567bf571a21fda 377 Pfam PF00381 PTS HPr component phosphorylation site 287 368 3.7E-24 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_14095 17e22647e54f1009f5567bf571a21fda 377 SUPERFAMILY SSF55804 148 276 2.44E-13 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_14095 17e22647e54f1009f5567bf571a21fda 377 Gene3D G3DSA:3.40.930.10 1 143 4.2E-40 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_14095 17e22647e54f1009f5567bf571a21fda 377 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 286 368 2.8E-22 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_14095 17e22647e54f1009f5567bf571a21fda 377 PRINTS PR00107 Phosphocarrier protein signature 325 340 8.8E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_14095 17e22647e54f1009f5567bf571a21fda 377 PRINTS PR00107 Phosphocarrier protein signature 297 313 8.8E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_14095 17e22647e54f1009f5567bf571a21fda 377 PRINTS PR00107 Phosphocarrier protein signature 340 357 8.8E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_14095 17e22647e54f1009f5567bf571a21fda 377 SUPERFAMILY SSF55594 287 375 1.31E-23 T 11-10-2018 IPR035895 HPr-like superfamily BED32_14095 17e22647e54f1009f5567bf571a21fda 377 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 297 304 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BED32_01350 e9cabdcaa5d35509aadc483d5698afb8 166 Pfam PF00583 Acetyltransferase (GNAT) family 39 137 2.5E-17 T 11-10-2018 IPR000182 GNAT domain BED32_01350 e9cabdcaa5d35509aadc483d5698afb8 166 SUPERFAMILY SSF55729 2 162 3.37E-36 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_01350 e9cabdcaa5d35509aadc483d5698afb8 166 Gene3D G3DSA:3.40.630.30 1 163 2.9E-40 T 11-10-2018 BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 SMART SM00778 29 67 4.6E-17 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Pfam PF03288 Poxvirus D5 protein-like 651 748 3.3E-20 T 11-10-2018 IPR004968 DNA primase/nucleoside triphosphatase, C-terminal BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Pfam PF08273 Zinc-binding domain of primase-helicase 30 67 6.5E-16 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 SMART SM00885 318 444 1.1E-18 T 11-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Gene3D G3DSA:3.40.50.300 444 614 4.9E-8 T 11-10-2018 BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Pfam PF08706 D5 N terminal like 368 447 5.2E-6 T 11-10-2018 IPR014818 Bacteriophage/plasmid primase, P4, C-terminal BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 SUPERFAMILY SSF57783 28 94 2.38E-10 T 11-10-2018 BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Gene3D G3DSA:1.10.10.10 652 750 2.1E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 SUPERFAMILY SSF46785 652 750 4.62E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 Pfam PF13362 Toprim domain 181 279 3.1E-10 T 11-10-2018 IPR006171 TOPRIM domain BED32_20555 514ad6e08a8831dd2c4a63e79f741106 764 SUPERFAMILY SSF52540 416 616 7.43E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 6.9E-150 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 Gene3D G3DSA:3.90.226.10 1 222 1.1E-85 T 11-10-2018 BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 Gene3D G3DSA:1.10.12.10 223 273 2.4E-31 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 SUPERFAMILY SSF52096 18 280 7.4E-78 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 3.8E-79 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.7 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 BED32_14475 5c17c7031d131b4bc86e1797b81448e8 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BED32_19650 c0eeb7ce7f4b0a13cb01f933a4ea6dcc 193 SUPERFAMILY SSF116927 33 190 3.14E-53 T 11-10-2018 IPR035074 EspA/CesA-like BED32_19650 c0eeb7ce7f4b0a13cb01f933a4ea6dcc 193 Pfam PF03433 EspA-like secreted protein 19 179 4.9E-48 T 11-10-2018 IPR005095 EspA-like secreted protein BED32_17630 ace352025159349669003d74d14dd424 185 SUPERFAMILY SSF55144 12 182 2.88E-42 T 11-10-2018 IPR009097 Cyclic phosphodiesterase BED32_17630 ace352025159349669003d74d14dd424 185 Gene3D G3DSA:3.90.1140.10 9 182 1.1E-47 T 11-10-2018 BED32_17630 ace352025159349669003d74d14dd424 185 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 12 181 21.443 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 BED32_17630 ace352025159349669003d74d14dd424 185 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 13 181 2.4E-34 T 11-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 BED32_17630 ace352025159349669003d74d14dd424 185 Pfam PF13563 2'-5' RNA ligase superfamily 21 138 7.4E-11 T 11-10-2018 BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 TIGRFAM TIGR00608 radc: DNA repair protein RadC 10 222 2.5E-84 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 171 176 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 Pfam PF04002 RadC-like JAB domain 102 220 1.3E-43 T 11-10-2018 IPR025657 RadC-like JAB domain BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 SUPERFAMILY SSF47781 16 85 4.89E-10 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 SUPERFAMILY SSF102712 150 188 5.49E-5 T 11-10-2018 BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 Hamap MF_00018 UPF0758 protein YicR [yicR]. 2 222 53.207 T 11-10-2018 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily BED32_21000 9a2db7cbfb0a6acc8311f6b96b1e1696 222 Gene3D G3DSA:3.40.140.10 98 222 7.4E-44 T 11-10-2018 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Gene3D G3DSA:1.10.730.10 389 526 5.4E-33 T 11-10-2018 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 SUPERFAMILY SSF57770 142 176 8.11E-13 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Pfam PF01588 Putative tRNA binding domain 579 672 1.5E-21 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 SUPERFAMILY SSF52374 6 387 1.31E-102 T 11-10-2018 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 8 535 2.5E-200 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 538 675 7.6E-45 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 SUPERFAMILY SSF50249 568 674 8.32E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Gene3D G3DSA:2.20.28.20 142 176 1.3E-162 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Gene3D G3DSA:3.40.50.620 8 384 1.3E-162 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 SUPERFAMILY SSF47323 390 546 9.35E-44 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.471 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Gene3D G3DSA:2.40.50.140 563 675 9.4E-29 T 11-10-2018 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 Pfam PF09334 tRNA synthetases class I (M) 8 396 5.6E-164 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_08585 7f2b82af1e635e82dc7225fcd6afdf60 675 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 2.1E-25 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 BED32_10375 4c387d6c683ca44ded228d883a164199 129 SMART SM01022 14 127 8.1E-36 T 11-10-2018 IPR007374 ASCH domain BED32_10375 4c387d6c683ca44ded228d883a164199 129 PIRSF PIRSF021320 2 129 5.4E-41 T 11-10-2018 IPR009326 Protein of unknown function DUF984 BED32_10375 4c387d6c683ca44ded228d883a164199 129 SUPERFAMILY SSF88697 3 127 1.42E-43 T 11-10-2018 IPR015947 PUA-like superfamily BED32_10375 4c387d6c683ca44ded228d883a164199 129 Pfam PF04266 ASCH domain 19 126 3.6E-22 T 11-10-2018 IPR007374 ASCH domain BED32_10375 4c387d6c683ca44ded228d883a164199 129 Gene3D G3DSA:3.10.400.10 1 129 1.6E-42 T 11-10-2018 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 SUPERFAMILY SSF53697 245 609 4.07E-113 T 11-10-2018 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Pfam PF01380 SIS domain 462 591 3.1E-28 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Pfam PF01380 SIS domain 289 417 1.3E-33 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Gene3D G3DSA:3.60.20.10 2 241 1.8E-82 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 609 3.7E-263 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Pfam PF13522 Glutamine amidotransferase domain 62 184 4.0E-21 T 11-10-2018 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Gene3D G3DSA:3.40.50.10490 447 594 2.2E-153 T 11-10-2018 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Gene3D G3DSA:3.40.50.10490 249 608 2.2E-153 T 11-10-2018 BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 SUPERFAMILY SSF56235 2 233 3.0E-74 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_21480 bc9b14ca1385bcd370e0f245b4ccf4db 609 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 609 41.002 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 BED32_10955 ae93086022ecaac0be0beba2c909d980 78 Pfam PF07869 Protein of unknown function (DUF1656) 19 68 6.5E-14 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.923 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 Pfam PF00202 Aminotransferase class-III 32 395 2.4E-75 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 SUPERFAMILY SSF53383 2 425 2.74E-133 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 Gene3D G3DSA:3.40.640.10 69 317 5.1E-176 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 Gene3D G3DSA:3.90.1150.10 7 419 5.1E-176 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_17595 6b04b204dd69fe25e04cda139bc3966b 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 2.1E-199 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 BED32_17305 296e9802664c261a22fa03b6c8ee6ca5 300 Pfam PF13358 DDE superfamily endonuclease 177 300 7.0E-21 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_17305 296e9802664c261a22fa03b6c8ee6ca5 300 SUPERFAMILY SSF46689 18 140 2.15E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_17305 296e9802664c261a22fa03b6c8ee6ca5 300 Pfam PF13384 Homeodomain-like domain 28 73 1.0E-8 T 11-10-2018 BED32_17305 296e9802664c261a22fa03b6c8ee6ca5 300 Gene3D G3DSA:3.30.420.470 143 300 1.1E-9 T 11-10-2018 BED32_17350 296e9802664c261a22fa03b6c8ee6ca5 300 Pfam PF13358 DDE superfamily endonuclease 177 300 7.0E-21 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_17350 296e9802664c261a22fa03b6c8ee6ca5 300 SUPERFAMILY SSF46689 18 140 2.15E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_17350 296e9802664c261a22fa03b6c8ee6ca5 300 Pfam PF13384 Homeodomain-like domain 28 73 1.0E-8 T 11-10-2018 BED32_17350 296e9802664c261a22fa03b6c8ee6ca5 300 Gene3D G3DSA:3.30.420.470 143 300 1.1E-9 T 11-10-2018 BED32_20700 ae406f8221dfddd724e7f519b8f980dc 139 Gene3D G3DSA:3.40.50.1010 3 138 1.8E-32 T 11-10-2018 BED32_20700 ae406f8221dfddd724e7f519b8f980dc 139 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 6 136 9.832 T 11-10-2018 IPR022907 VapC family GO:0004540 BED32_20700 ae406f8221dfddd724e7f519b8f980dc 139 SUPERFAMILY SSF88723 2 138 1.51E-30 T 11-10-2018 IPR029060 PIN-like domain superfamily BED32_20700 ae406f8221dfddd724e7f519b8f980dc 139 Pfam PF01850 PIN domain 6 131 3.2E-12 T 11-10-2018 IPR002716 PIN domain BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 Gene3D G3DSA:3.40.190.10 163 259 1.1E-58 T 11-10-2018 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.7E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 SUPERFAMILY SSF53850 93 291 1.38E-31 T 11-10-2018 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 4.8E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 SUPERFAMILY SSF46785 2 87 1.79E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 Gene3D G3DSA:1.10.10.10 6 93 2.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 Gene3D G3DSA:3.40.190.10 103 285 1.1E-58 T 11-10-2018 BED32_09760 9a3674c4f9741ddddceac6a13af7c354 294 Pfam PF03466 LysR substrate binding domain 93 289 5.4E-34 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_10705 e7ee242822e87491b7fd667c8c9e507b 305 Hamap MF_01164 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [arnC]. 1 304 55.866 T 11-10-2018 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase GO:0016780 KEGG: 00520+2.4.2.53 BED32_10705 e7ee242822e87491b7fd667c8c9e507b 305 SUPERFAMILY SSF53448 13 208 8.23E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_10705 e7ee242822e87491b7fd667c8c9e507b 305 Gene3D G3DSA:3.90.550.10 1 208 6.2E-30 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_10705 e7ee242822e87491b7fd667c8c9e507b 305 Pfam PF00535 Glycosyl transferase family 2 13 150 2.6E-26 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 Gene3D G3DSA:1.20.1640.10 91 294 2.2E-16 T 11-10-2018 BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 Pfam PF02355 Protein export membrane protein 98 281 1.1E-71 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 107 269 8.9E-56 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 SUPERFAMILY SSF82866 61 283 2.22E-42 T 11-10-2018 BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 1 283 28.041 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 Pfam PF07549 SecD/SecF GG Motif 21 47 2.2E-11 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 PRINTS PR01755 Bacterial translocase SecF protein signature 25 40 1.5E-33 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 PRINTS PR01755 Bacterial translocase SecF protein signature 188 206 1.5E-33 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 PRINTS PR01755 Bacterial translocase SecF protein signature 140 154 1.5E-33 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 PRINTS PR01755 Bacterial translocase SecF protein signature 220 235 1.5E-33 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05935 d16142347b16b7e4e27a3ca5a2d249ee 303 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 26 272 1.9E-88 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 PRINTS PR00315 GTP-binding elongation factor signature 12 25 3.0E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 PRINTS PR00315 GTP-binding elongation factor signature 85 95 3.0E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 PRINTS PR00315 GTP-binding elongation factor signature 137 146 3.0E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.0E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 PRINTS PR00315 GTP-binding elongation factor signature 101 112 3.0E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SUPERFAMILY SSF54980 407 485 3.02E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:3.30.230.10 489 555 4.0E-20 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Pfam PF00679 Elongation factor G C-terminus 562 649 1.4E-30 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SUPERFAMILY SSF50447 256 405 6.41E-36 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 184 2.0E-29 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Pfam PF03764 Elongation factor G, domain IV 484 572 2.8E-22 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SMART SM00838 562 650 1.3E-51 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:3.40.50.300 1 298 5.1E-107 T 11-10-2018 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SMART SM00889 485 600 1.8E-22 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 555 1.3E-269 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:3.30.70.870 410 485 3.0E-33 T 11-10-2018 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:3.30.70.240 566 637 5.3E-37 T 11-10-2018 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 6.2E-63 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SUPERFAMILY SSF54980 565 652 8.63E-28 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SUPERFAMILY SSF54211 484 558 4.55E-20 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Hamap MF_00054_B Elongation factor G [fusA]. 6 654 99.334 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Pfam PF14492 Elongation Factor G, domain II 409 483 3.2E-35 T 11-10-2018 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:3.30.230.10 556 650 5.3E-37 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 SUPERFAMILY SSF52540 6 288 7.48E-102 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Gene3D G3DSA:2.40.30.10 299 404 3.7E-43 T 11-10-2018 BED32_04775 b6624e56993c08dd3c4b550a4f0b2fa8 658 Pfam PF03144 Elongation factor Tu domain 2 329 396 8.3E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_20180 ae33b100384ad505b00094cf1a727753 285 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 14 284 9.6E-130 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_20180 ae33b100384ad505b00094cf1a727753 285 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 54.296 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Pfam PF00140 Sigma-70 factor, region 1.2 15 40 4.4E-7 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_20180 ae33b100384ad505b00094cf1a727753 285 SUPERFAMILY SSF88946 12 122 7.06E-40 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Gene3D G3DSA:1.20.120.1810 2 122 1.9E-27 T 11-10-2018 BED32_20180 ae33b100384ad505b00094cf1a727753 285 SUPERFAMILY SSF88659 200 284 5.05E-19 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_20180 ae33b100384ad505b00094cf1a727753 285 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 280 7.5E-35 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Gene3D G3DSA:1.10.10.10 214 284 2.9E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20180 ae33b100384ad505b00094cf1a727753 285 PIRSF PIRSF000770 5 285 6.5E-33 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Pfam PF04545 Sigma-70, region 4 229 280 3.2E-16 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 Pfam PF04542 Sigma-70 region 2 53 122 3.3E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 PRINTS PR00046 Major sigma-70 factor signature 77 90 3.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 PRINTS PR00046 Major sigma-70 factor signature 253 268 3.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 PRINTS PR00046 Major sigma-70 factor signature 233 245 3.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_20180 ae33b100384ad505b00094cf1a727753 285 PRINTS PR00046 Major sigma-70 factor signature 268 279 3.9E-19 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 SUPERFAMILY SSF53328 2 207 1.57E-68 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 2 192 1.3E-78 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 Pfam PF00551 Formyl transferase 2 182 4.4E-65 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.383 T 11-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 BED32_15690 11e78a2b846aae3aac8f14af704935c1 212 Gene3D G3DSA:3.40.50.170 2 212 7.2E-87 T 11-10-2018 BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 SUPERFAMILY SSF46785 5 86 2.04E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 SUPERFAMILY SSF53850 92 301 2.17E-36 T 11-10-2018 BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 Pfam PF03466 LysR substrate binding domain 92 298 2.3E-35 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.1E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 Gene3D G3DSA:3.40.190.290 94 298 3.2E-47 T 11-10-2018 BED32_09710 e0219c999cd57f1d1060f95151e0d310 305 Gene3D G3DSA:1.10.10.10 5 91 7.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54814 2 106 1.91E-37 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.1140.32 108 208 3.9E-46 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 SMART SM00322 60 125 1.6E-6 T 11-10-2018 IPR004087 K Homology domain GO:0003676 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.264 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 SUPERFAMILY SSF54821 108 206 6.93E-41 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 Gene3D G3DSA:3.30.300.20 17 107 1.3E-29 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 2.3E-100 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01905 e4854c3184f2f6bef7a38facf4b9e29c 232 Pfam PF07650 KH domain 38 111 8.9E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 1.4E-177 T 11-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 Gene3D G3DSA:3.40.50.2300 146 395 9.5E-139 T 11-10-2018 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 Pfam PF13433 Periplasmic binding protein domain 31 406 1.3E-170 T 11-10-2018 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 2.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 2.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 2.2E-5 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 SUPERFAMILY SSF53822 30 408 1.98E-91 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08140 0f8e52e7057b7b04f8eb4aa795f79b46 422 Gene3D G3DSA:3.40.50.2300 33 375 9.5E-139 T 11-10-2018 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 1.8E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF51206 8 136 1.23E-35 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:1.10.10.10 139 207 1.3E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00419 160 208 4.5E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 8.8E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 8.8E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 SMART SM00100 2 122 1.1E-26 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 6.5E-24 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 SUPERFAMILY SSF46785 139 207 3.64E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 Gene3D G3DSA:2.60.120.10 10 138 6.9E-45 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site BED32_01720 677797853f26d0ffd9d0cda9ef8774c2 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 120.456 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 Gene3D G3DSA:3.40.1280.10 1 160 8.3E-68 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 7.8E-71 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 SUPERFAMILY SSF75217 1 244 1.5E-102 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 Gene3D G3DSA:1.10.1270.20 161 246 4.9E-36 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 233 3.5E-111 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BED32_04990 94dd18918d7e8623da3f51b8c5ef3910 246 PIRSF PIRSF000386 1 245 2.1E-102 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:1.10.1050.10 1 102 7.6E-46 T 11-10-2018 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF01479 S4 domain 97 143 7.2E-18 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 8.6E-86 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 Gene3D G3DSA:3.10.290.10 103 191 3.5E-36 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 SUPERFAMILY SSF55174 3 206 6.54E-72 T 11-10-2018 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM00363 96 160 8.2E-20 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 SMART SM01390 3 95 6.1E-50 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 6.8E-33 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 BED32_01995 f6d97c4f5674721605c1c4c9ef0497c7 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.196 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 Gene3D G3DSA:1.10.1130.10 29 459 3.6E-186 T 11-10-2018 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 25 461 1.0E-239 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 Hamap MF_01182 Cytochrome c-552 [nrfA]. 5 464 55.65 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 SUPERFAMILY SSF48695 23 459 3.01E-159 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 PIRSF PIRSF000243 21 465 2.0E-120 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 Gene3D G3DSA:1.20.140.10 298 440 3.6E-186 T 11-10-2018 BED32_13390 2378fc9329bff4ff406bebc6bb5f9390 465 Pfam PF02335 Cytochrome c552 30 459 7.6E-172 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 Gene3D G3DSA:3.40.50.1820 1 317 7.7E-112 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 12 314 1.8E-124 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 Pfam PF00561 alpha/beta hydrolase fold 41 297 1.6E-31 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 SUPERFAMILY SSF53474 7 314 2.84E-61 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PIRSF PIRSF006431 2 318 1.3E-138 T 11-10-2018 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 109 122 6.6E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 123 136 6.6E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00111 Alpha/beta hydrolase fold signature 63 78 6.6E-6 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 66 77 3.2E-13 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 109 123 3.2E-13 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BED32_12630 e82eda2180bc4f51aa8b3a93e85ea1e3 318 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 40 48 3.2E-13 T 11-10-2018 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 BED32_03535 a6a0d14488045aab66222fcd0083b967 197 SUPERFAMILY SSF52218 1 193 4.39E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_03535 a6a0d14488045aab66222fcd0083b967 197 Pfam PF02525 Flavodoxin-like fold 3 188 2.0E-35 T 11-10-2018 IPR003680 Flavodoxin-like fold BED32_03535 a6a0d14488045aab66222fcd0083b967 197 Gene3D G3DSA:3.40.50.360 1 193 8.7E-64 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 PRINTS PR00369 Flavodoxin signature 108 127 6.6E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 PRINTS PR00369 Flavodoxin signature 53 64 6.6E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 PRINTS PR00369 Flavodoxin signature 84 94 6.6E-7 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 Gene3D G3DSA:3.40.50.360 1 149 1.6E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 Pfam PF00258 Flavodoxin 6 130 3.4E-22 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BED32_16915 4c75dc4d297435bf5ae51f03ad47f592 149 SUPERFAMILY SSF52218 1 148 1.61E-39 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 Gene3D G3DSA:3.10.50.30 76 158 7.2E-32 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 PIRSF PIRSF006092 1 158 3.6E-54 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 2.9E-59 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 4.0E-32 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 SUPERFAMILY SSF46557 3 78 1.96E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 Gene3D G3DSA:1.10.287.180 1 75 2.4E-33 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.258 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 SUPERFAMILY SSF54534 81 157 4.45E-23 T 11-10-2018 BED32_18980 96452c5af261fbd6c7283075d9f5a744 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 157 5.2E-27 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 Pfam PF00293 NUDIX domain 131 234 1.4E-15 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 93 124 4.6E-8 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 Gene3D G3DSA:3.90.79.10 126 256 1.1E-38 T 11-10-2018 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 ProSitePatterns PS00893 Nudix box signature. 159 180 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 Hamap MF_00297 NADH pyrophosphatase [nudC]. 1 257 44.182 T 11-10-2018 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 SUPERFAMILY SSF55811 79 241 4.9E-39 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 Gene3D G3DSA:3.90.79.20 2 125 4.4E-47 T 11-10-2018 BED32_19785 89e74889820306ad0b8b184f70fe0050 261 SUPERFAMILY SSF55811 2 96 4.46E-31 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_06280 f817f34a5c5f2706deceb2ce032a0657 126 Pfam PF04304 Protein of unknown function (DUF454) 3 116 1.3E-39 T 11-10-2018 IPR007401 Protein of unknown function DUF454 BED32_06280 f817f34a5c5f2706deceb2ce032a0657 126 PIRSF PIRSF016789 2 123 4.7E-48 T 11-10-2018 IPR007401 Protein of unknown function DUF454 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 338 357 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 203 222 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 365 385 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 303 329 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 PRINTS PR00173 Glutamate-aspartate symporter signature 155 177 4.7E-53 T 11-10-2018 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 Gene3D G3DSA:1.10.3860.10 1 428 3.1E-137 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 Hamap MF_02063 Proton/glutamate-aspartate symporter [gltP]. 1 428 45.671 T 11-10-2018 IPR034703 Proton/glutamate-aspartate symporter GltP GO:0006835|GO:0015293|GO:0016021 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 Pfam PF00375 Sodium:dicarboxylate symporter family 8 411 7.0E-118 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 SUPERFAMILY SSF118215 8 412 6.28E-124 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_19690 7ef2ccc7ce8102bf6d6be6c429c73a92 437 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 306 329 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.1E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.1E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 SUPERFAMILY SSF51206 23 162 2.88E-31 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 4.0E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 Pfam PF13545 Crp-like helix-turn-helix domain 168 242 1.5E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 SUPERFAMILY SSF46785 165 245 3.21E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 SMART SM00419 187 235 4.6E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 Gene3D G3DSA:1.10.10.10 165 247 2.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 SMART SM00100 30 151 9.7E-22 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain BED32_11280 3b02721b449532de24e8e62a4041d2ca 251 Gene3D G3DSA:2.60.120.10 43 164 4.1E-48 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_07425 32aa3dbb463ac3696dc670b41a7886c0 105 Gene3D G3DSA:3.30.460.10 2 105 2.3E-36 T 11-10-2018 BED32_07425 32aa3dbb463ac3696dc670b41a7886c0 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 7 104 4.4E-38 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BED32_07425 32aa3dbb463ac3696dc670b41a7886c0 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 3 105 24.917 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS BED32_07425 32aa3dbb463ac3696dc670b41a7886c0 105 SUPERFAMILY SSF81301 4 105 3.11E-37 T 11-10-2018 BED32_07425 32aa3dbb463ac3696dc670b41a7886c0 105 Pfam PF02410 Ribosomal silencing factor during starvation 10 104 1.5E-28 T 11-10-2018 BED32_20365 e13add944257d46c5a0effb4559ba713 459 Gene3D G3DSA:3.50.50.60 1 288 2.3E-9 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20365 e13add944257d46c5a0effb4559ba713 459 Pfam PF13454 FAD-NAD(P)-binding 5 148 1.5E-20 T 11-10-2018 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain BED32_20365 e13add944257d46c5a0effb4559ba713 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 140 158 8.3E-5 T 11-10-2018 BED32_20365 e13add944257d46c5a0effb4559ba713 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 3 22 8.3E-5 T 11-10-2018 BED32_20365 e13add944257d46c5a0effb4559ba713 459 SUPERFAMILY SSF51905 2 229 7.64E-11 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 SUPERFAMILY SSF81271 279 359 4.58E-36 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Gene3D G3DSA:3.10.20.30 48 362 2.0E-153 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Gene3D G3DSA:3.40.50.300 4 278 2.0E-153 T 11-10-2018 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 1.6E-39 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 6.7E-174 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 SUPERFAMILY SSF52540 3 301 5.31E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 PIRSF PIRSF006641 1 363 2.2E-157 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.761 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.2E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_09770 1743824f23f0cad8d6334c1dd56d3c78 363 Gene3D G3DSA:1.10.150.300 120 200 2.0E-153 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 360 51.684 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 Pfam PF00266 Aminotransferase class-V 4 349 7.7E-68 T 11-10-2018 IPR000192 Aminotransferase class V domain BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 SUPERFAMILY SSF53383 1 358 2.36E-119 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 Gene3D G3DSA:3.90.1150.10 258 361 3.0E-39 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 Gene3D G3DSA:3.40.640.10 17 257 3.4E-93 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 359 1.4E-156 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 188 207 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BED32_13675 6170150c73f5a86a8360caceb8971fdc 361 PIRSF PIRSF000525 1 361 3.5E-150 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 BED32_20070 473579892e12d36cc646ec602df53768 317 Pfam PF03466 LysR substrate binding domain 87 288 4.2E-41 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_20070 473579892e12d36cc646ec602df53768 317 SUPERFAMILY SSF53850 88 290 9.46E-38 T 11-10-2018 BED32_20070 473579892e12d36cc646ec602df53768 317 Gene3D G3DSA:1.10.10.10 1 89 9.9E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20070 473579892e12d36cc646ec602df53768 317 SUPERFAMILY SSF46785 1 109 6.53E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20070 473579892e12d36cc646ec602df53768 317 Gene3D G3DSA:3.40.190.10 90 286 1.0E-71 T 11-10-2018 BED32_20070 473579892e12d36cc646ec602df53768 317 Gene3D G3DSA:3.40.190.10 160 263 1.0E-71 T 11-10-2018 BED32_20070 473579892e12d36cc646ec602df53768 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_20070 473579892e12d36cc646ec602df53768 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_20070 473579892e12d36cc646ec602df53768 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_20070 473579892e12d36cc646ec602df53768 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_10390 7a7039122154036269aa8fdb4bdd03a4 249 Gene3D G3DSA:2.60.40.10 35 156 2.9E-12 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_10390 7a7039122154036269aa8fdb4bdd03a4 249 SUPERFAMILY SSF49354 23 155 1.31E-27 T 11-10-2018 IPR008962 PapD-like superfamily BED32_10390 7a7039122154036269aa8fdb4bdd03a4 249 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 155 2.5E-20 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 SUPERFAMILY SSF50447 13 100 1.17E-24 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 Gene3D G3DSA:2.40.30.60 6 100 3.1E-34 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 Pfam PF05239 PRC-barrel domain 103 177 4.0E-9 T 11-10-2018 IPR027275 PRC-barrel domain BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 Gene3D G3DSA:2.30.30.240 101 182 1.7E-31 T 11-10-2018 BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 14 182 1.2E-60 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 13 182 24.408 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 SUPERFAMILY SSF50346 106 182 2.94E-19 T 11-10-2018 IPR011033 PRC-barrel-like superfamily BED32_04985 62be16fe07bd253be5bfb7cf9aa6d2f1 182 Pfam PF01782 RimM N-terminal domain 16 96 2.2E-26 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Gene3D G3DSA:2.30.130.40 1 118 1.6E-37 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 676 684 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 352 489 1.6E-17 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 SMART SM00464 10 202 1.1E-82 T 11-10-2018 IPR003111 Lon, substrate-binding domain BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Gene3D G3DSA:1.20.58.1480 120 245 2.5E-47 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PIRSF PIRSF001174 1 775 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 570 772 6.8E-96 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Gene3D G3DSA:3.40.50.300 314 490 7.1E-61 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 356 375 5.0E-56 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 595 611 5.0E-56 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 673 692 5.0E-56 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 726 744 5.0E-56 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 703 722 5.0E-56 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Gene3D G3DSA:3.30.230.10 585 772 1.5E-86 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 SUPERFAMILY SSF54211 595 771 1.25E-58 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 8.9E-44 T 11-10-2018 IPR003111 Lon, substrate-binding domain BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 SMART SM00382 348 492 2.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 SUPERFAMILY SSF88697 10 201 6.46E-52 T 11-10-2018 IPR015947 PUA-like superfamily BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Gene3D G3DSA:1.10.8.60 491 584 4.1E-33 T 11-10-2018 BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 SUPERFAMILY SSF52540 313 586 1.66E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06090 eac80553b3dc1700ea4a0b7d4d3d4713 784 Hamap MF_01973 Lon protease [lon]. 11 772 72.067 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 BED32_12090 e10868cee5521407d50faca2e8732e01 333 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_12090 e10868cee5521407d50faca2e8732e01 333 SUPERFAMILY SSF52540 45 310 3.82E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12090 e10868cee5521407d50faca2e8732e01 333 Pfam PF00005 ABC transporter 36 192 2.2E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12090 e10868cee5521407d50faca2e8732e01 333 SMART SM00382 44 250 5.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_12090 e10868cee5521407d50faca2e8732e01 333 Gene3D G3DSA:3.40.50.300 13 330 1.6E-95 T 11-10-2018 BED32_12090 e10868cee5521407d50faca2e8732e01 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 244 308 7.9E-21 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_12090 e10868cee5521407d50faca2e8732e01 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 244 326 3.2E-24 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_14210 26b471208383b73704acf91bd244b88c 235 SUPERFAMILY SSF55174 1 55 2.36E-11 T 11-10-2018 BED32_14210 26b471208383b73704acf91bd244b88c 235 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_14210 26b471208383b73704acf91bd244b88c 235 Pfam PF01479 S4 domain 1 46 6.0E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_14210 26b471208383b73704acf91bd244b88c 235 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 4.4E-59 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_14210 26b471208383b73704acf91bd244b88c 235 SUPERFAMILY SSF55120 61 227 5.6E-48 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14210 26b471208383b73704acf91bd244b88c 235 SMART SM00363 1 69 1.7E-7 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_14210 26b471208383b73704acf91bd244b88c 235 Gene3D G3DSA:3.30.70.580 63 227 4.3E-61 T 11-10-2018 BED32_14210 26b471208383b73704acf91bd244b88c 235 Pfam PF00849 RNA pseudouridylate synthase 62 192 2.4E-19 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14210 26b471208383b73704acf91bd244b88c 235 Gene3D G3DSA:3.30.70.1560 128 209 4.3E-61 T 11-10-2018 BED32_14210 26b471208383b73704acf91bd244b88c 235 Gene3D G3DSA:3.10.290.10 1 62 5.5E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_12195 ecd6a36b2865542da0023a3e4623e6e0 96 Pfam PF07383 Protein of unknown function (DUF1496) 36 94 3.3E-26 T 11-10-2018 IPR009971 Protein of unknown function DUF1496 BED32_10730 efdde727a6c28be8bfd0c3c208f4dd95 128 Hamap MF_00538 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF [arnF]. 2 126 22.082 T 11-10-2018 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF BED32_10730 efdde727a6c28be8bfd0c3c208f4dd95 128 Gene3D G3DSA:1.10.3730.20 39 126 2.1E-7 T 11-10-2018 BED32_10730 efdde727a6c28be8bfd0c3c208f4dd95 128 SUPERFAMILY SSF103481 45 124 1.14E-8 T 11-10-2018 BED32_09905 983095ddedd748547e599fe9637a9414 213 Hamap MF_01584 UPF0502 protein YceH [yceH]. 5 209 33.803 T 11-10-2018 IPR007432 Protein of unknown function DUF480 BED32_09905 983095ddedd748547e599fe9637a9414 213 Gene3D G3DSA:1.10.10.10 93 171 2.2E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09905 983095ddedd748547e599fe9637a9414 213 Pfam PF04337 Protein of unknown function, DUF480 5 156 6.6E-62 T 11-10-2018 IPR007432 Protein of unknown function DUF480 BED32_09905 983095ddedd748547e599fe9637a9414 213 Gene3D G3DSA:1.10.10.10 1 87 1.1E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09905 983095ddedd748547e599fe9637a9414 213 SUPERFAMILY SSF46785 88 169 3.18E-27 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09905 983095ddedd748547e599fe9637a9414 213 SUPERFAMILY SSF46785 3 82 9.62E-34 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Pfam PF01171 PP-loop family 24 202 8.0E-58 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 383 423 1.8E-12 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Pfam PF09179 TilS substrate binding domain 252 319 8.8E-18 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 12 311 23.125 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Gene3D G3DSA:1.20.59.20 238 322 5.9E-28 T 11-10-2018 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 24 207 5.6E-53 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 SUPERFAMILY SSF56037 347 453 2.62E-31 T 11-10-2018 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Gene3D G3DSA:3.40.50.620 17 237 3.2E-69 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_16795 fb346009aed55fd3acdce563aad41d29 461 Pfam PF11734 TilS substrate C-terminal domain 380 451 2.7E-26 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 SUPERFAMILY SSF82829 238 323 4.71E-24 T 11-10-2018 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 SMART SM00977 379 451 8.8E-26 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 BED32_16795 fb346009aed55fd3acdce563aad41d29 461 SUPERFAMILY SSF52402 16 237 5.29E-61 T 11-10-2018 BED32_13145 837aa6519e5608eec60e593f559b91d6 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 11-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BED32_13145 837aa6519e5608eec60e593f559b91d6 212 Gene3D G3DSA:3.40.50.300 1 210 2.3E-63 T 11-10-2018 BED32_13145 837aa6519e5608eec60e593f559b91d6 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 28.493 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BED32_13145 837aa6519e5608eec60e593f559b91d6 212 SUPERFAMILY SSF52540 1 206 4.87E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13145 837aa6519e5608eec60e593f559b91d6 212 Pfam PF02223 Thymidylate kinase 8 198 7.9E-61 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 BED32_13145 837aa6519e5608eec60e593f559b91d6 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 6.9E-64 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 Pfam PF00311 Phosphoenolpyruvate carboxylase 128 879 1.1E-292 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 SUPERFAMILY SSF51621 6 879 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 9.1E-69 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 879 18.308 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 BED32_00605 967f78d5b712ff7b597e7e4e031f7b8d 879 Gene3D G3DSA:1.20.1440.90 272 388 4.9E-27 T 11-10-2018 BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 288 497 1.2E-8 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 Pfam PF13899 Thioredoxin-like 571 652 1.2E-12 T 11-10-2018 BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 SUPERFAMILY SSF52833 562 679 1.19E-12 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 ProSitePatterns PS00194 Thioredoxin family active site. 590 608 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 Gene3D G3DSA:3.40.30.10 561 655 4.7E-11 T 11-10-2018 BED32_14815 abdaee4f830a0f663ffa5cba47893eb8 686 Pfam PF11412 Disulphide bond corrector protein DsbC 38 146 1.7E-17 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-10-2018 BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 Gene3D G3DSA:3.30.1240.10 86 192 3.2E-66 T 11-10-2018 BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 263 3.5E-53 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 236 6.4E-21 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 Gene3D G3DSA:3.40.50.1000 3 263 3.2E-66 T 11-10-2018 IPR023214 HAD superfamily BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 SUPERFAMILY SSF56784 1 266 8.52E-63 T 11-10-2018 IPR036412 HAD-like superfamily BED32_09140 dcf04a342b1d41b56923cdfe04f06b7c 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 263 3.5E-59 T 11-10-2018 BED32_09190 6d3b00925146e4303cdef40a27653565 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 501 677 1.5E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_09190 6d3b00925146e4303cdef40a27653565 692 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 209 400 3.8E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_09190 6d3b00925146e4303cdef40a27653565 692 SUPERFAMILY SSF161098 434 674 2.9E-42 T 11-10-2018 IPR035906 MetI-like superfamily BED32_09190 6d3b00925146e4303cdef40a27653565 692 Gene3D G3DSA:1.10.3720.10 430 688 1.1E-44 T 11-10-2018 IPR035906 MetI-like superfamily BED32_09190 6d3b00925146e4303cdef40a27653565 692 Gene3D G3DSA:1.10.3720.10 139 410 3.2E-51 T 11-10-2018 IPR035906 MetI-like superfamily BED32_09190 6d3b00925146e4303cdef40a27653565 692 SUPERFAMILY SSF161098 140 405 3.53E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 Gene3D G3DSA:1.10.10.10 1 45 7.6E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 Pfam PF08220 DeoR-like helix-turn-helix domain 2 50 4.6E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 SMART SM01134 63 223 8.7E-60 T 11-10-2018 BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 SUPERFAMILY SSF46785 4 61 2.57E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 SMART SM00420 1 48 2.9E-16 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 Pfam PF00455 DeoR C terminal sensor domain 67 222 4.2E-47 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 14 28 1.3E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 28 46 1.3E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_12495 c57c8618ebada2b973073e70d42eeaf3 249 SUPERFAMILY SSF100950 65 223 2.2E-25 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 SUPERFAMILY SSF56349 107 297 1.85E-57 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 299 63.865 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Gene3D G3DSA:1.10.443.10 111 293 4.7E-78 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Gene3D G3DSA:1.10.150.130 5 100 4.7E-21 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Pfam PF00589 Phage integrase family 114 285 1.4E-55 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 7 299 58.771 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 2.2E-23 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 299 1.2E-118 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 BED32_17415 ec7936892e472ebbff45cfe59de68ee4 299 SUPERFAMILY SSF47823 5 101 2.35E-36 T 11-10-2018 BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 Gene3D G3DSA:3.40.50.720 1 253 4.5E-78 T 11-10-2018 BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 Pfam PF00106 short chain dehydrogenase 11 203 2.7E-63 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 1.9E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 SUPERFAMILY SSF51735 8 252 7.56E-80 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.9E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 8.9E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.9E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_14525 a880cb621fef4a7a4f91107180f0e216 254 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.2E-5 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00097 Anthranilate synthase component II signature 236 245 1.2E-5 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.2E-5 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 SUPERFAMILY SSF52021 3 143 9.15E-57 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 3.3E-11 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 3.3E-11 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 3.3E-11 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 SUPERFAMILY SSF52317 153 378 1.36E-63 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_18120 172c35df8cb151a1a68fc3243755c435 387 Pfam PF00117 Glutamine amidotransferase class-I 197 372 7.6E-49 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_18120 172c35df8cb151a1a68fc3243755c435 387 SMART SM01097 3 133 6.1E-90 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 Gene3D G3DSA:3.40.50.880 152 379 2.2E-76 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_18120 172c35df8cb151a1a68fc3243755c435 387 Gene3D G3DSA:3.50.30.20 2 151 3.3E-61 T 11-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 9.9E-41 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 9.9E-41 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 9.9E-41 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 9.9E-41 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 9.9E-41 T 11-10-2018 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 1.1E-51 T 11-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 48.409 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18120 172c35df8cb151a1a68fc3243755c435 387 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 2.3E-150 T 11-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 369 523 2.5E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 251 8.9E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 8 525 4.3E-240 T 11-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 SUPERFAMILY SSF161098 286 527 6.8E-30 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 Gene3D G3DSA:1.10.3720.10 9 268 6.2E-44 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 Gene3D G3DSA:1.10.3720.10 289 534 5.4E-25 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18025 80823d6843caa6a05d9a7c7cd5cb0d9c 535 SUPERFAMILY SSF161098 11 264 3.27E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10600 447858e86f91c3c8d264ed81ab1a2b49 212 Gene3D G3DSA:1.10.530.10 35 210 7.9E-45 T 11-10-2018 BED32_10600 447858e86f91c3c8d264ed81ab1a2b49 212 SUPERFAMILY SSF53955 45 209 2.06E-29 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_10600 447858e86f91c3c8d264ed81ab1a2b49 212 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 67 95 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BED32_10600 447858e86f91c3c8d264ed81ab1a2b49 212 Pfam PF01464 Transglycosylase SLT domain 49 174 3.1E-28 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_19095 ffa0a3da8b585883cb9e5e9cad8f9697 67 Gene3D G3DSA:3.30.1910.10 1 64 3.7E-27 T 11-10-2018 BED32_19095 ffa0a3da8b585883cb9e5e9cad8f9697 67 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 4.0E-30 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 BED32_19095 ffa0a3da8b585883cb9e5e9cad8f9697 67 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 65 2.0E-29 T 11-10-2018 IPR009491 Protein of unknown function DUF1107 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 68 81 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 15 234 1.5E-53 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 Gene3D G3DSA:3.20.20.70 2 244 1.3E-85 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 SMART SM00934 16 237 3.6E-101 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 14 242 39.858 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 SUPERFAMILY SSF51366 14 240 2.77E-80 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_11885 3552a021dea9d33d25f29719f2de3b6f 246 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 18 236 1.2E-55 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_08825 d42e8af6f7ca6a004ff76200866b5281 286 SUPERFAMILY SSF54211 2 144 4.17E-21 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_08825 d42e8af6f7ca6a004ff76200866b5281 286 PIRSF PIRSF033887 1 281 8.8E-64 T 11-10-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 BED32_08825 d42e8af6f7ca6a004ff76200866b5281 286 Pfam PF00288 GHMP kinases N terminal domain 72 115 1.8E-8 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BED32_08825 d42e8af6f7ca6a004ff76200866b5281 286 Gene3D G3DSA:3.30.230.10 2 144 2.4E-14 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_15510 d654e887e304e0a47028d12a19256097 167 Pfam PF12838 4Fe-4S dicluster domain 110 157 2.3E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_15510 d654e887e304e0a47028d12a19256097 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 143 154 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_15510 d654e887e304e0a47028d12a19256097 167 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 27 164 22.977 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 BED32_15510 d654e887e304e0a47028d12a19256097 167 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 6 159 1.6E-46 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 BED32_15510 d654e887e304e0a47028d12a19256097 167 Gene3D G3DSA:3.30.70.20 101 161 8.2E-10 T 11-10-2018 BED32_15510 d654e887e304e0a47028d12a19256097 167 Pfam PF13187 4Fe-4S dicluster domain 39 84 3.5E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_15510 d654e887e304e0a47028d12a19256097 167 SUPERFAMILY SSF54862 36 161 6.7E-20 T 11-10-2018 BED32_15510 d654e887e304e0a47028d12a19256097 167 Gene3D G3DSA:3.30.70.20 36 100 6.8E-7 T 11-10-2018 BED32_15510 d654e887e304e0a47028d12a19256097 167 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 39 50 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 SUPERFAMILY SSF51445 5 473 6.84E-161 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 304 318 3.0E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 370 378 3.0E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 391 402 3.0E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 437 449 3.0E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 PRINTS PR00131 Glycosyl hydrolase family 1 signature 412 429 3.0E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 Pfam PF00232 Glycosyl hydrolase family 1 4 472 4.5E-135 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 Gene3D G3DSA:3.20.20.80 1 475 1.3E-154 T 11-10-2018 BED32_15090 521a5b148c0883ceb1780d84a9a4cd78 476 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 370 378 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Pfam PF01820 D-ala D-ala ligase N-terminus 2 127 2.2E-31 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 SUPERFAMILY SSF52440 2 136 9.5E-37 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 2 347 2.1E-113 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Gene3D G3DSA:3.40.50.20 1 125 4.5E-44 T 11-10-2018 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Pfam PF07478 D-ala D-ala ligase C-terminus 144 345 9.7E-76 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 SUPERFAMILY SSF56059 137 354 7.78E-58 T 11-10-2018 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Gene3D G3DSA:3.30.470.20 126 350 1.7E-87 T 11-10-2018 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 104 115 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 290 318 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 PIRSF PIRSF039102 1 356 2.6E-132 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Gene3D G3DSA:3.30.1490.20 152 221 1.7E-87 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_05705 df93817e0b9f71a088ed4d597ec51fc9 363 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 1 348 42.571 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 Gene3D G3DSA:3.30.1370.120 146 207 1.3E-8 T 11-10-2018 IPR038591 NolW-like superfamily BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 383 416 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 Pfam PF00263 Bacterial type II and III secretion system protein 278 437 1.7E-46 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 Gene3D G3DSA:3.55.50.30 40 144 3.9E-24 T 11-10-2018 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 50 437 1.9E-121 T 11-10-2018 IPR013355 Type IV pilus secretin PilQ BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR00811 Bacterial general secretion pathway protein D signature 425 439 1.7E-13 T 11-10-2018 IPR001775 GspD/PilQ family BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR00811 Bacterial general secretion pathway protein D signature 402 420 1.7E-13 T 11-10-2018 IPR001775 GspD/PilQ family BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR00811 Bacterial general secretion pathway protein D signature 274 298 1.7E-13 T 11-10-2018 IPR001775 GspD/PilQ family BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR01032 Gene IV protein signature 299 322 5.5E-8 T 11-10-2018 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR01032 Gene IV protein signature 258 281 5.5E-8 T 11-10-2018 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 PRINTS PR01032 Gene IV protein signature 365 393 5.5E-8 T 11-10-2018 BED32_01615 5d1cbac63394f5c4bfd4594d94455143 439 Pfam PF03958 Bacterial type II/III secretion system short domain 148 208 7.4E-11 T 11-10-2018 IPR005644 NolW-like BED32_07440 7077e1339fc158a74cc4ec1831eb2ff2 201 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 2 158 26.709 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BED32_07440 7077e1339fc158a74cc4ec1831eb2ff2 201 Gene3D G3DSA:3.30.160.150 10 163 5.7E-61 T 11-10-2018 BED32_07440 7077e1339fc158a74cc4ec1831eb2ff2 201 Pfam PF04390 Lipopolysaccharide-assembly 39 153 7.9E-15 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 BED32_04640 469574778d3759a6e4f950f0edab82f2 321 SUPERFAMILY SSF51261 72 318 4.39E-50 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_04640 469574778d3759a6e4f950f0edab82f2 321 SMART SM00257 72 116 5.4E-10 T 11-10-2018 IPR018392 LysM domain BED32_04640 469574778d3759a6e4f950f0edab82f2 321 Pfam PF01551 Peptidase family M23 221 314 3.8E-31 T 11-10-2018 IPR016047 Peptidase M23 BED32_04640 469574778d3759a6e4f950f0edab82f2 321 Gene3D G3DSA:3.10.350.10 65 120 1.9E-10 T 11-10-2018 IPR036779 LysM domain superfamily BED32_04640 469574778d3759a6e4f950f0edab82f2 321 Gene3D G3DSA:2.70.70.10 138 321 6.8E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_04640 469574778d3759a6e4f950f0edab82f2 321 Pfam PF01476 LysM domain 73 114 6.3E-9 T 11-10-2018 IPR018392 LysM domain BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Pfam PF13492 GAF domain 569 646 1.7E-11 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SUPERFAMILY SSF55874 721 887 3.93E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SMART SM00387 776 886 8.8E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SUPERFAMILY SSF55781 510 658 3.85E-6 T 11-10-2018 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 831 841 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 813 827 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 870 883 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 PRINTS PR00344 Bacterial sensor protein C-terminal signature 846 864 2.2E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:3.30.450.40 512 654 5.8E-35 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:3.30.565.10 738 891 3.9E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Pfam PF13493 Domain of unknown function (DUF4118) 404 508 3.2E-30 T 11-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:3.40.50.300 20 230 3.4E-102 T 11-10-2018 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:3.40.50.620 238 364 1.9E-6 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:1.10.287.130 655 734 4.6E-14 T 11-10-2018 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SMART SM00388 665 732 1.5E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Gene3D G3DSA:1.20.120.620 397 503 6.2E-39 T 11-10-2018 IPR038318 KdpD, transmembrane domain superfamily BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 23 231 6.5E-99 T 11-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 778 886 1.1E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 Pfam PF00512 His Kinase A (phospho-acceptor) domain 666 732 3.3E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SUPERFAMILY SSF47384 660 733 2.35E-14 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_07640 2374f4d2fa5c6aa179a63aa7a75e6acb 899 SUPERFAMILY SSF52402 254 361 5.61E-8 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Gene3D G3DSA:3.40.50.800 532 642 6.1E-31 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 SMART SM00863 170 219 2.6E-19 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Gene3D G3DSA:3.10.20.30 1 64 2.5E-22 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 SUPERFAMILY SSF55186 63 241 3.66E-64 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 3.7E-242 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Pfam PF03129 Anticodon binding domain 541 628 4.4E-21 T 11-10-2018 IPR004154 Anticodon-binding BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 SUPERFAMILY SSF52954 529 636 1.15E-31 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 SUPERFAMILY SSF81271 3 61 8.94E-17 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Gene3D G3DSA:3.30.930.10 223 531 2.1E-128 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Gene3D G3DSA:3.30.980.10 69 222 5.9E-62 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 2.9E-50 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.879 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 9.0E-55 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 9.0E-55 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 9.0E-55 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 9.0E-55 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 9.0E-55 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Pfam PF02824 TGS domain 4 61 1.3E-11 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Gene3D G3DSA:3.30.54.20 130 187 5.9E-62 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 SUPERFAMILY SSF55681 243 525 2.1E-95 T 11-10-2018 BED32_10640 ba50bc0b2896b125c687d80eba3a20d3 642 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 3.8E-14 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BED32_16215 d8b5e4d7223ce880d3ca1e15f3a069ed 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_16215 d8b5e4d7223ce880d3ca1e15f3a069ed 86 Pfam PF12838 4Fe-4S dicluster domain 8 56 1.8E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_16215 d8b5e4d7223ce880d3ca1e15f3a069ed 86 Gene3D G3DSA:3.30.70.20 2 86 1.7E-35 T 11-10-2018 BED32_16215 d8b5e4d7223ce880d3ca1e15f3a069ed 86 SUPERFAMILY SSF54862 5 72 2.09E-17 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 407 434 2.7E-11 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00532 3 448 3.0E-285 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 BED32_15330 2330b300adf15b721a58215847b15b19 672 Hamap MF_01588 DNA ligase [ligA]. 2 668 54.908 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 PIRSF PIRSF001604 1 672 7.9E-260 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:3.30.470.30 70 253 3.0E-102 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF12826 Helix-hairpin-helix motif 510 573 4.2E-23 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:3.40.50.10190 591 672 3.9E-26 T 11-10-2018 IPR036420 BRCT domain superfamily BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:2.40.50.140 317 390 1.7E-34 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:3.30.1490.70 78 316 3.0E-102 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:1.10.150.20 506 585 5.5E-29 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF14520 Helix-hairpin-helix domain 446 502 3.6E-6 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:1.10.150.20 432 505 7.4E-30 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 398 1.6E-36 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 1.6E-136 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:2.20.70.80 391 431 1.1E-21 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 SUPERFAMILY SSF56091 2 316 1.04E-123 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00292 594 671 3.3E-15 T 11-10-2018 IPR001357 BRCT domain BED32_15330 2330b300adf15b721a58215847b15b19 672 SUPERFAMILY SSF52113 595 668 6.73E-19 T 11-10-2018 IPR036420 BRCT domain superfamily BED32_15330 2330b300adf15b721a58215847b15b19 672 Gene3D G3DSA:1.10.287.610 1 69 3.5E-31 T 11-10-2018 BED32_15330 2330b300adf15b721a58215847b15b19 672 SUPERFAMILY SSF47781 404 578 2.78E-61 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_15330 2330b300adf15b721a58215847b15b19 672 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 664 1.2E-270 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 SUPERFAMILY SSF50249 318 400 2.23E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_15330 2330b300adf15b721a58215847b15b19 672 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site BED32_15330 2330b300adf15b721a58215847b15b19 672 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 595 667 1.5E-12 T 11-10-2018 IPR001357 BRCT domain BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00278 512 531 200.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00278 544 563 29.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00278 446 465 17.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_15330 2330b300adf15b721a58215847b15b19 672 SMART SM00278 480 499 3.5 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_06310 c769df7073f4944797384a2951a17f5c 214 Pfam PF00406 Adenylate kinase 5 185 5.0E-60 T 11-10-2018 BED32_06310 c769df7073f4944797384a2951a17f5c 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 1.7E-75 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 BED32_06310 c769df7073f4944797384a2951a17f5c 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 SUPERFAMILY SSF52540 1 210 2.4E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06310 c769df7073f4944797384a2951a17f5c 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.4E-15 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 BED32_06310 c769df7073f4944797384a2951a17f5c 214 PRINTS PR00094 Adenylate kinase signature 81 97 3.1E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 PRINTS PR00094 Adenylate kinase signature 4 17 3.1E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 PRINTS PR00094 Adenylate kinase signature 173 187 3.1E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 PRINTS PR00094 Adenylate kinase signature 32 46 3.1E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 PRINTS PR00094 Adenylate kinase signature 156 171 3.1E-35 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_06310 c769df7073f4944797384a2951a17f5c 214 Gene3D G3DSA:3.40.50.300 1 214 1.7E-79 T 11-10-2018 BED32_06310 c769df7073f4944797384a2951a17f5c 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.516 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 BED32_08040 a586734fcb30bc00c194457c569b0532 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 253 277 1.4E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_08040 a586734fcb30bc00c194457c569b0532 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 290 309 1.4E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_08040 a586734fcb30bc00c194457c569b0532 368 PRINTS PR00164 ABC-2 type transport system membrane protein signature 310 329 1.4E-6 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_08040 a586734fcb30bc00c194457c569b0532 368 Pfam PF12698 ABC-2 family transporter protein 25 354 5.0E-49 T 11-10-2018 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 Pfam PF02274 Amidinotransferase 28 422 2.5E-110 T 11-10-2018 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 SUPERFAMILY SSF55909 13 425 1.8E-128 T 11-10-2018 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 Gene3D G3DSA:1.10.3930.10 78 164 7.9E-149 T 11-10-2018 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PIRSF PIRSF006356 1 425 1.8E-139 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 Gene3D G3DSA:3.75.10.10 16 422 7.9E-149 T 11-10-2018 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 Hamap MF_00242 Arginine deiminase [arcA]. 11 425 46.583 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 TIGRFAM TIGR01078 arcA: arginine deiminase 16 425 2.4E-153 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 361 378 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 12 32 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 193 208 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 165 183 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 404 422 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_18535 d20711f26160419ab834bbe7a85d2543 427 PRINTS PR01466 Bacterial arginine deiminase signature 381 395 8.2E-47 T 11-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 253 272 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 579 606 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 384 395 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 467 489 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 495 518 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 PRINTS PR01183 Ribonucleotide reductase large chain signature 428 451 7.8E-33 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 Pfam PF08343 Ribonucleotide reductase N-terminal 18 99 1.9E-34 T 11-10-2018 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 17 716 0.0 T 11-10-2018 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 Pfam PF02867 Ribonucleotide reductase, barrel domain 178 695 9.8E-143 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 568 590 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 SUPERFAMILY SSF51998 177 700 1.8E-187 T 11-10-2018 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 Gene3D G3DSA:1.10.1650.20 296 347 9.9E-28 T 11-10-2018 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 101 173 8.6E-11 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 SUPERFAMILY SSF48168 17 176 9.81E-62 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16610 7ed92b9f26b884bf8fb37b7885ea5210 716 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 105 698 2.8E-160 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_17455 62bb3cac68a098f7880aeb901b7d8d10 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_17455 62bb3cac68a098f7880aeb901b7d8d10 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 SUPERFAMILY SSF118001 1 71 5.62E-28 T 11-10-2018 IPR036685 YehU-like superfamily BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 PIRSF PIRSF006169 1 76 5.6E-36 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 Gene3D G3DSA:1.10.10.610 1 74 1.1E-28 T 11-10-2018 IPR036685 YehU-like superfamily BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 70 24.062 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 67 3.0E-26 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 BED32_01735 d4f6f91f34fbf2333879a183b9e5c342 78 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 1.4E-33 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Gene3D G3DSA:1.10.10.160 108 181 1.4E-99 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 SUPERFAMILY SSF52540 2 638 1.74E-160 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 666 0.0 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 40.56 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 2.6E-71 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Gene3D G3DSA:1.10.486.10 377 544 8.2E-133 T 11-10-2018 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Gene3D G3DSA:3.40.50.300 274 632 8.2E-133 T 11-10-2018 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Gene3D G3DSA:3.40.50.300 4 266 1.4E-99 T 11-10-2018 BED32_20515 b027d1886c6cfa553e3f0b0da3b16adf 674 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 1.6E-74 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 Gene3D G3DSA:3.40.1380.10 61 206 3.0E-112 T 11-10-2018 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 273 286 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 PRINTS PR00126 ATP synthase gamma subunit signature 265 286 3.4E-38 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 PRINTS PR00126 ATP synthase gamma subunit signature 234 253 3.4E-38 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 3.4E-38 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 3.4E-38 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 SUPERFAMILY SSF52943 2 287 2.09E-96 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 287 2.2E-111 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 Pfam PF00231 ATP synthase 5 286 5.4E-96 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 Gene3D G3DSA:1.10.287.80 6 283 3.0E-112 T 11-10-2018 BED32_21460 97ad3dd620de90af5bb26588051872f4 287 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 287 36.349 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SUPERFAMILY SSF54980 411 488 1.73E-25 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Pfam PF00679 Elongation factor G C-terminus 609 694 2.0E-31 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Gene3D G3DSA:3.40.50.300 1 303 3.9E-116 T 11-10-2018 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SUPERFAMILY SSF54980 612 697 2.27E-29 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Pfam PF03764 Elongation factor G, domain IV 486 607 1.9E-48 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Pfam PF14492 Elongation Factor G, domain II 411 485 9.8E-34 T 11-10-2018 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SUPERFAMILY SSF50447 271 411 3.98E-35 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SUPERFAMILY SSF52540 6 287 3.24E-106 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Gene3D G3DSA:3.30.230.10 491 695 5.2E-89 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SUPERFAMILY SSF54211 486 608 2.48E-42 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 113.655 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Pfam PF03144 Elongation factor Tu domain 2 331 398 9.7E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Gene3D G3DSA:3.30.70.870 412 487 1.3E-32 T 11-10-2018 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SMART SM00889 487 607 3.6E-75 T 11-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.1E-32 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 SMART SM00838 609 696 2.3E-58 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 11-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 4.6E-67 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Gene3D G3DSA:3.30.70.240 613 683 5.2E-89 T 11-10-2018 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 PRINTS PR00315 GTP-binding elongation factor signature 137 146 1.7E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.7E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.7E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 PRINTS PR00315 GTP-binding elongation factor signature 85 95 1.7E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 PRINTS PR00315 GTP-binding elongation factor signature 101 112 1.7E-16 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_01850 bd4c634683b7b318f1fb0a7b027f56d1 702 Gene3D G3DSA:2.40.30.10 304 411 3.5E-44 T 11-10-2018 BED32_01505 ae9c44f418c812226ba10422d20eb6d3 91 SUPERFAMILY SSF46785 11 84 7.69E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01505 ae9c44f418c812226ba10422d20eb6d3 91 Gene3D G3DSA:1.10.10.10 7 89 3.8E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01505 ae9c44f418c812226ba10422d20eb6d3 91 Pfam PF09012 FeoC like transcriptional regulator 12 85 1.2E-21 T 11-10-2018 IPR015102 Transcriptional regulator HTH-type, FeoC BED32_01505 ae9c44f418c812226ba10422d20eb6d3 91 Hamap MF_01586 Probable [Fe-S]-dependent transcriptional repressor [feoC]. 10 88 26.119 T 11-10-2018 IPR023732 Probable [Fe-S]-dependent transcriptional repressor BED32_03770 f13d16e1466db1c484ecc7c95be3c28c 347 Gene3D G3DSA:3.40.50.1980 52 170 1.4E-30 T 11-10-2018 BED32_03770 f13d16e1466db1c484ecc7c95be3c28c 347 SUPERFAMILY SSF53807 51 338 9.42E-48 T 11-10-2018 BED32_03770 f13d16e1466db1c484ecc7c95be3c28c 347 Pfam PF01497 Periplasmic binding protein 74 320 2.4E-26 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_03770 f13d16e1466db1c484ecc7c95be3c28c 347 Gene3D G3DSA:3.40.50.1980 171 347 2.6E-66 T 11-10-2018 BED32_19370 2a89e5051cd91868ecbb69b17e139f56 112 Pfam PF03091 CutA1 divalent ion tolerance protein 12 109 2.6E-33 T 11-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 BED32_19370 2a89e5051cd91868ecbb69b17e139f56 112 Gene3D G3DSA:3.30.70.120 1 111 7.2E-40 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BED32_19370 2a89e5051cd91868ecbb69b17e139f56 112 Hamap MF_01160 Divalent-cation tolerance protein CutA [cutA]. 6 112 35.177 T 11-10-2018 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria GO:0005507|GO:0005737 BED32_19370 2a89e5051cd91868ecbb69b17e139f56 112 SUPERFAMILY SSF54913 10 110 1.3E-34 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BED32_07725 8a28ff8f274d406569ea12ed0c13f7a5 339 Pfam PF06166 Protein of unknown function (DUF979) 6 338 1.6E-130 T 11-10-2018 IPR009323 Protein of unknown function DUF979 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 SUPERFAMILY SSF55307 203 319 2.98E-42 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 337 8.0E-142 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 SMART SM00865 206 324 8.3E-56 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 PRINTS PR00423 Cell division protein FtsZ signature 188 210 1.4E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 PRINTS PR00423 Cell division protein FtsZ signature 97 117 1.4E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 PRINTS PR00423 Cell division protein FtsZ signature 211 232 1.4E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 PRINTS PR00423 Cell division protein FtsZ signature 125 146 1.4E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 13 172 1.1E-41 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 SMART SM00864 12 204 4.3E-112 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 ProSitePatterns PS01135 FtsZ protein signature 2. 96 117 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 Gene3D G3DSA:3.40.50.1440 9 316 1.5E-116 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 Pfam PF12327 FtsZ family, C-terminal domain 221 315 5.7E-37 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal BED32_17855 66a2d15348b9d318252c2776330b7d51 383 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 8 343 38.094 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 SUPERFAMILY SSF52490 12 207 1.3E-69 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 BED32_17855 66a2d15348b9d318252c2776330b7d51 383 ProSitePatterns PS01134 FtsZ protein signature 1. 43 77 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 BED32_17600 69a53dba1737b85291f5bf3d79fbd223 463 Pfam PF07690 Major Facilitator Superfamily 44 422 9.9E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_17600 69a53dba1737b85291f5bf3d79fbd223 463 SUPERFAMILY SSF103473 28 460 3.01E-35 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17600 69a53dba1737b85291f5bf3d79fbd223 463 Gene3D G3DSA:1.20.1250.20 241 462 7.4E-59 T 11-10-2018 BED32_17600 69a53dba1737b85291f5bf3d79fbd223 463 TIGRFAM TIGR00886 2A0108: nitrite transporter 37 418 8.9E-96 T 11-10-2018 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 BED32_17600 69a53dba1737b85291f5bf3d79fbd223 463 Gene3D G3DSA:1.20.1250.20 3 238 1.2E-79 T 11-10-2018 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 SUPERFAMILY SSF55729 1 338 1.13E-130 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 336 6.3E-141 T 11-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 Hamap MF_01171 Arginine N-succinyltransferase [astA]. 1 344 72.163 T 11-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 4 338 3.9E-145 T 11-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 Gene3D G3DSA:2.40.40.20 275 339 4.2E-8 T 11-10-2018 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 4 338 3.3E-155 T 11-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 BED32_09970 27a2b99e1a8878015d4946cdb9b8aaa8 345 Gene3D G3DSA:3.40.630.30 1 272 4.1E-120 T 11-10-2018 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 88 1.2E-23 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Gene3D G3DSA:2.160.10.10 100 309 8.6E-67 T 11-10-2018 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 326 35.357 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Gene3D G3DSA:3.40.1390.10 1 99 2.4E-37 T 11-10-2018 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 225 253 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 110 144 1.0E-9 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 145 179 5.9E-8 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 255 6.8E-7 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 2.6E-124 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 BED32_16840 5270ab6ac9669a225167c2eaa55b7b69 340 SUPERFAMILY SSF51161 33 316 3.2E-87 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 44 687 1.7E-185 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 SUPERFAMILY SSF56935 44 687 1.13E-97 T 11-10-2018 BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 44 687 2.4E-148 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 161 3.1E-23 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 Gene3D G3DSA:2.170.130.10 43 166 1.6E-41 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 Pfam PF00593 TonB dependent receptor 287 685 5.1E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 51 - T 11-10-2018 IPR010916 TonB box, conserved site BED32_19435 464e73d6a62fc1df911e62363f99e61d 687 Gene3D G3DSA:2.40.170.20 167 687 8.4E-127 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_07695 eec903bdfe12a4628eee28844721468b 351 PIRSF PIRSF000962 8 351 7.5E-121 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 Pfam PF02112 cAMP phosphodiesterases class-II 48 334 1.8E-54 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 Gene3D G3DSA:3.60.15.10 43 336 1.2E-17 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_07695 eec903bdfe12a4628eee28844721468b 351 SUPERFAMILY SSF56281 49 317 2.3E-21 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_07695 eec903bdfe12a4628eee28844721468b 351 ProSitePatterns PS00607 cAMP phosphodiesterases class-II signature. 125 139 - T 11-10-2018 IPR024225 Cyclic-AMP phosphodiesterase class-II, conserved site GO:0008081 BED32_07695 eec903bdfe12a4628eee28844721468b 351 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 276 289 1.8E-29 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 148 169 1.8E-29 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 121 139 1.8E-29 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 257 268 1.8E-29 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_07695 eec903bdfe12a4628eee28844721468b 351 PRINTS PR00388 3'5'-cyclic nucleotide class II phosphodiesterase signature 302 313 1.8E-29 T 11-10-2018 IPR000396 Cyclic-AMP phosphodiesterase, class-II GO:0004115|GO:0006198 BED32_01680 7074b108c943fb57089fba824e67d5be 394 Hamap MF_01044 Protein TsgA [tsgA]. 1 390 28.828 T 11-10-2018 IPR023528 Major facilitator superfamily transporter, TsgA BED32_01680 7074b108c943fb57089fba824e67d5be 394 Pfam PF07690 Major Facilitator Superfamily 15 320 1.8E-22 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_01680 7074b108c943fb57089fba824e67d5be 394 Gene3D G3DSA:1.20.1250.20 2 188 8.1E-16 T 11-10-2018 BED32_01680 7074b108c943fb57089fba824e67d5be 394 Gene3D G3DSA:1.20.1250.20 206 388 8.2E-21 T 11-10-2018 BED32_01680 7074b108c943fb57089fba824e67d5be 394 SUPERFAMILY SSF103473 4 389 1.19E-38 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 SUPERFAMILY SSF52096 167 535 1.34E-69 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 Pfam PF03572 Peptidase family S41 356 529 5.6E-53 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 320 1.9E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 Gene3D G3DSA:3.90.226.10 339 545 1.6E-51 T 11-10-2018 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 SUPERFAMILY SSF50156 216 347 1.04E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 534 667 8.3E-43 T 11-10-2018 IPR020992 Tail specific protease, C-terminal BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 Gene3D G3DSA:2.30.42.10 246 338 2.7E-16 T 11-10-2018 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 SMART SM00228 246 323 3.7E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 SMART SM00245 326 531 3.0E-81 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 BED32_10440 3123828b278ef6fdafc57ad8f29c360e 691 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 551 4.2E-126 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 Pfam PF06418 CTP synthase N-terminus 5 266 7.9E-126 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.6E-63 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 Gene3D G3DSA:3.40.50.300 1 285 8.0E-136 T 11-10-2018 BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 1.3E-263 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 SUPERFAMILY SSF52540 3 269 4.91E-122 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.181 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 SUPERFAMILY SSF52317 289 541 1.28E-88 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_17535 5692d9886eaea3334a30d71e552f04fa 545 Gene3D G3DSA:3.40.50.880 287 545 1.2E-106 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_10210 58d0cd72114f71c4bb099f4d8bd4d043 320 Pfam PF01297 Zinc-uptake complex component A periplasmic 30 314 6.3E-58 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 BED32_10210 58d0cd72114f71c4bb099f4d8bd4d043 320 Gene3D G3DSA:3.40.50.1980 29 206 8.3E-58 T 11-10-2018 BED32_10210 58d0cd72114f71c4bb099f4d8bd4d043 320 SUPERFAMILY SSF53807 29 318 5.4E-80 T 11-10-2018 BED32_10210 58d0cd72114f71c4bb099f4d8bd4d043 320 Gene3D G3DSA:3.40.50.1980 207 320 3.2E-42 T 11-10-2018 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 SUPERFAMILY SSF52343 444 599 7.6E-50 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 13 599 3.7E-270 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 SUPERFAMILY SSF52218 63 211 4.39E-43 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Gene3D G3DSA:1.20.990.10 280 384 1.3E-74 T 11-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Pfam PF00667 FAD binding domain 230 424 2.1E-27 T 11-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PIRSF PIRSF000207 1 599 7.9E-273 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Pfam PF00175 Oxidoreductase NAD-binding domain 457 563 2.9E-19 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Gene3D G3DSA:2.40.30.10 232 439 1.3E-74 T 11-10-2018 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Gene3D G3DSA:3.40.50.80 445 599 6.6E-57 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 494 505 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 548 556 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 386 393 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 456 475 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 481 490 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 419 428 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 525 541 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 270 280 1.1E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Pfam PF00258 Flavodoxin 67 197 1.2E-32 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 SUPERFAMILY SSF63380 228 446 3.4E-64 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00369 Flavodoxin signature 169 188 2.5E-14 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00369 Flavodoxin signature 65 78 2.5E-14 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00369 Flavodoxin signature 113 124 2.5E-14 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 PRINTS PR00369 Flavodoxin signature 145 155 2.5E-14 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 2 599 51.569 T 11-10-2018 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04555 a9a720ec3fee9207bc55d4b031e83052 599 Gene3D G3DSA:3.40.50.360 58 218 1.3E-46 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_21285 21951a1caa20f763c0090175ace159e9 932 Pfam PF00476 DNA polymerase family A 555 929 7.1E-155 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 272 1.1E-30 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 1.9E-56 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SMART SM00482 689 896 1.6E-116 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SMART SM00475 7 268 3.3E-141 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 658 680 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 696 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 879 892 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 794 805 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 703 726 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 757 782 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 733 746 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 848 864 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 PRINTS PR00868 DNA-polymerase family A (pol I) signature 816 827 1.7E-79 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:3.30.420.10 329 545 1.8E-74 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_21285 21951a1caa20f763c0090175ace159e9 932 TIGRFAM TIGR00593 pola: DNA polymerase I 9 932 1.7E-289 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SMART SM00474 333 520 5.5E-50 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Pfam PF01612 3'-5' exonuclease 333 520 1.8E-45 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SUPERFAMILY SSF88723 7 170 5.4E-58 T 11-10-2018 IPR029060 PIN-like domain superfamily BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:1.20.1060.10 546 661 5.9E-40 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:3.40.50.1010 9 284 2.2E-98 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SUPERFAMILY SSF56672 525 932 5.67E-158 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SMART SM00279 173 208 1.2E-13 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SUPERFAMILY SSF47807 171 291 1.09E-31 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:3.30.70.370 667 928 7.4E-116 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 ProSitePatterns PS00447 DNA polymerase family A signature. 757 776 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:1.10.150.20 174 253 2.2E-98 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 Gene3D G3DSA:1.10.150.20 712 855 7.4E-116 T 11-10-2018 BED32_21285 21951a1caa20f763c0090175ace159e9 932 SUPERFAMILY SSF53098 329 521 1.34E-58 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_16625 07cd2636aceec65a1d07d1d2c591fc26 376 SUPERFAMILY SSF161098 162 344 4.97E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16625 07cd2636aceec65a1d07d1d2c591fc26 376 Gene3D G3DSA:1.10.3720.10 160 349 5.2E-38 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16625 07cd2636aceec65a1d07d1d2c591fc26 376 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 183 348 1.0E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 SUPERFAMILY SSF81442 43 560 3.01E-179 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 Gene3D G3DSA:1.20.210.10 30 566 7.7E-190 T 11-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 503 5.6E-135 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 11-10-2018 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 11-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06040 2fe2861babead518b0a4b9d424a0b861 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 7.5E-96 T 11-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 Pfam PF12833 Helix-turn-helix domain 214 290 8.4E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 259 274 2.3E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 274 290 2.3E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 Pfam PF10114 Sensory domain found in PocR 7 164 1.7E-42 T 11-10-2018 IPR018771 PocR domain BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 SUPERFAMILY SSF46689 190 241 1.22E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 SMART SM00342 207 290 2.2E-34 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 SUPERFAMILY SSF46689 244 291 8.96E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 Gene3D G3DSA:1.10.10.60 189 239 1.1E-16 T 11-10-2018 BED32_08945 8ebd5f8f8858969cd3049f2588c7f381 300 Gene3D G3DSA:1.10.10.60 240 295 4.0E-17 T 11-10-2018 BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 PRINTS PR01100 Shikimate kinase family signature 6 21 2.5E-5 T 11-10-2018 BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 PRINTS PR01100 Shikimate kinase family signature 100 117 2.5E-5 T 11-10-2018 BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 SUPERFAMILY SSF52540 2 166 1.16E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 Gene3D G3DSA:3.40.50.300 2 170 3.8E-69 T 11-10-2018 BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 Pfam PF01202 Shikimate kinase 12 166 4.4E-15 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_01370 4f1f0f958d8c76c65cbfc623ded76fe2 170 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 164 3.7E-69 T 11-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 Gene3D G3DSA:3.40.50.1980 36 235 3.2E-121 T 11-10-2018 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PIRSF PIRSF000099 3 433 3.1E-167 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 Gene3D G3DSA:3.40.50.1980 237 352 3.2E-121 T 11-10-2018 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 429 5.1E-159 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 112 139 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 255 274 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 364 382 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 323 348 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 PRINTS PR00083 Histidinol dehydrogenase signature 233 254 8.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 SUPERFAMILY SSF53720 10 430 4.12E-86 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 233 265 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 430 40.766 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_08745 52b48b580e9148f630a8cf25acdc19d9 441 Pfam PF00815 Histidinol dehydrogenase 31 430 2.1E-164 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 BED32_10110 1b1cbb41509f9df6cae5827388d775bf 212 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 12 33 2.5E-6 T 11-10-2018 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 BED32_10110 1b1cbb41509f9df6cae5827388d775bf 212 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 94 115 2.5E-6 T 11-10-2018 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 BED32_10110 1b1cbb41509f9df6cae5827388d775bf 212 PRINTS PR01613 Escherichia coli P pili tip fibrillum PapF protein signature 34 57 2.5E-6 T 11-10-2018 IPR005430 P pili tip fibrillum PapF protein GO:0009289|GO:0009405 BED32_10110 1b1cbb41509f9df6cae5827388d775bf 212 Pfam PF06551 Protein of unknown function (DUF1120) 30 98 8.0E-8 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 BED32_21310 9fb47d6e3989f98ada26588f6d726768 177 Gene3D G3DSA:2.20.25.120 52 84 4.0E-58 T 11-10-2018 BED32_21310 9fb47d6e3989f98ada26588f6d726768 177 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 9 167 1.4E-44 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 BED32_21310 9fb47d6e3989f98ada26588f6d726768 177 SUPERFAMILY SSF52540 6 168 1.95E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21310 9fb47d6e3989f98ada26588f6d726768 177 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 9 142 2.4E-47 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 BED32_21310 9fb47d6e3989f98ada26588f6d726768 177 Gene3D G3DSA:3.40.50.300 9 164 4.0E-58 T 11-10-2018 BED32_19960 49b16fa06f32ed4119defa149939d640 204 Pfam PF01205 Uncharacterized protein family UPF0029 18 125 6.8E-29 T 11-10-2018 IPR001498 Impact, N-terminal BED32_19960 49b16fa06f32ed4119defa149939d640 204 Gene3D G3DSA:3.30.230.30 1 134 9.5E-53 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily BED32_19960 49b16fa06f32ed4119defa149939d640 204 SUPERFAMILY SSF54211 2 130 6.07E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_19960 49b16fa06f32ed4119defa149939d640 204 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 1 200 1.2E-75 T 11-10-2018 IPR015796 Impact family, bacterial/archaeal BED32_19960 49b16fa06f32ed4119defa149939d640 204 SUPERFAMILY SSF54980 136 203 2.34E-17 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_19960 49b16fa06f32ed4119defa149939d640 204 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site BED32_19960 49b16fa06f32ed4119defa149939d640 204 Pfam PF09186 Domain of unknown function (DUF1949) 141 195 2.1E-15 T 11-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal BED32_19960 49b16fa06f32ed4119defa149939d640 204 Gene3D G3DSA:3.30.70.240 135 204 8.3E-31 T 11-10-2018 BED32_14940 87a36a432f5280d599634e82ce426b39 103 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 11 103 1.5E-39 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 BED32_14940 87a36a432f5280d599634e82ce426b39 103 Gene3D G3DSA:3.30.70.860 32 103 1.6E-26 T 11-10-2018 IPR035571 UPF0234-like, C-terminal BED32_14940 87a36a432f5280d599634e82ce426b39 103 Pfam PF04175 Protein of unknown function (DUF406) 13 103 2.0E-39 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 BED32_20500 e42f5311e843ea44f0692931f46c3106 428 Pfam PF00271 Helicase conserved C-terminal domain 243 351 2.4E-28 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_20500 e42f5311e843ea44f0692931f46c3106 428 Pfam PF00270 DEAD/DEAH box helicase 33 204 8.8E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_20500 e42f5311e843ea44f0692931f46c3106 428 SMART SM00490 270 351 4.5E-30 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_20500 e42f5311e843ea44f0692931f46c3106 428 Gene3D G3DSA:3.40.50.300 2 222 1.1E-67 T 11-10-2018 BED32_20500 e42f5311e843ea44f0692931f46c3106 428 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.537 T 11-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 BED32_20500 e42f5311e843ea44f0692931f46c3106 428 SUPERFAMILY SSF52540 84 363 1.66E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20500 e42f5311e843ea44f0692931f46c3106 428 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BED32_20500 e42f5311e843ea44f0692931f46c3106 428 Gene3D G3DSA:3.40.50.300 227 393 1.4E-44 T 11-10-2018 BED32_20500 e42f5311e843ea44f0692931f46c3106 428 SMART SM00487 28 234 1.7E-50 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 172 197 1.0E-7 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.0E-7 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 1.0E-7 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 338 1.1E-64 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 Gene3D G3DSA:3.50.50.100 1 409 6.1E-118 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 9.8E-16 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 115 133 9.8E-16 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 9.8E-16 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 9.8E-16 T 11-10-2018 BED32_13065 a3050ab4d64c5c274357b10d556d8da0 434 SUPERFAMILY SSF51905 3 339 3.44E-33 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 SUPERFAMILY SSF52540 3 236 3.94E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 SMART SM00382 28 215 4.8E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 Pfam PF00005 ABC transporter 19 167 1.1E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 PIRSF PIRSF039085 1 243 3.6E-111 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 Gene3D G3DSA:3.40.50.300 2 244 1.5E-76 T 11-10-2018 BED32_05205 c1573a0152895ee1f5ad81c61e435194 244 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 SUPERFAMILY SSF51905 7 384 4.54E-58 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 Gene3D G3DSA:3.50.50.60 9 340 1.4E-102 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 9 392 2.4E-126 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 Gene3D G3DSA:3.30.9.50 84 271 1.4E-102 T 11-10-2018 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 Pfam PF01494 FAD binding domain 8 340 2.8E-25 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 282 297 6.4E-18 T 11-10-2018 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 297 313 6.4E-18 T 11-10-2018 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 6.4E-18 T 11-10-2018 BED32_07505 c54f5f9f3bef4dacf65fa99732283a6d 393 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 6.4E-18 T 11-10-2018 BED32_18705 ac010b5e2ad58998d51cc206233564d8 63 Gene3D G3DSA:3.40.190.290 1 59 1.5E-13 T 11-10-2018 BED32_18705 ac010b5e2ad58998d51cc206233564d8 63 SUPERFAMILY SSF53850 1 61 5.27E-10 T 11-10-2018 BED32_18705 ac010b5e2ad58998d51cc206233564d8 63 Pfam PF03466 LysR substrate binding domain 1 58 6.8E-10 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 SUPERFAMILY SSF53067 1 204 4.21E-26 T 11-10-2018 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 Gene3D G3DSA:3.30.420.40 385 429 5.0E-12 T 11-10-2018 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 Pfam PF00012 Hsp70 protein 331 422 2.5E-5 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 Pfam PF00012 Hsp70 protein 130 229 2.3E-8 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 SUPERFAMILY SSF53067 208 447 3.44E-31 T 11-10-2018 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 Gene3D G3DSA:3.90.640.10 313 384 5.0E-12 T 11-10-2018 BED32_15745 cb6ab70d6466be9adbf2ba4d6dd1ca2e 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_06315 4ec541502da586e679fa9f7553546f55 327 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BED32_06315 4ec541502da586e679fa9f7553546f55 327 SUPERFAMILY SSF53800 4 320 7.33E-100 T 11-10-2018 BED32_06315 4ec541502da586e679fa9f7553546f55 327 Pfam PF00762 Ferrochelatase 6 319 2.4E-108 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BED32_06315 4ec541502da586e679fa9f7553546f55 327 Gene3D G3DSA:3.40.50.1400 163 301 7.8E-92 T 11-10-2018 BED32_06315 4ec541502da586e679fa9f7553546f55 327 Hamap MF_00323 Ferrochelatase [hemH]. 4 320 37.819 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BED32_06315 4ec541502da586e679fa9f7553546f55 327 TIGRFAM TIGR00109 hemH: ferrochelatase 1 318 3.7E-108 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 BED32_06315 4ec541502da586e679fa9f7553546f55 327 Gene3D G3DSA:3.40.50.1400 7 319 7.8E-92 T 11-10-2018 BED32_00420 98c9d6062587fa694e7dcdfe844428b1 92 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 3 84 1.6E-28 T 11-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related BED32_00420 98c9d6062587fa694e7dcdfe844428b1 92 Gene3D G3DSA:1.20.1280.80 1 92 9.1E-42 T 11-10-2018 IPR038347 TyeA superfamily BED32_00420 98c9d6062587fa694e7dcdfe844428b1 92 Pfam PF09059 TyeA 6 86 5.1E-33 T 11-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA BED32_00420 98c9d6062587fa694e7dcdfe844428b1 92 SUPERFAMILY SSF140591 2 90 1.65E-29 T 11-10-2018 BED32_00420 98c9d6062587fa694e7dcdfe844428b1 92 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 1 81 6.0E-43 T 11-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA BED32_18275 144d18fb95ef39b70ed7721516432169 903 Gene3D G3DSA:3.40.50.1000 335 683 9.8E-291 T 11-10-2018 IPR023214 HAD superfamily BED32_18275 144d18fb95ef39b70ed7721516432169 903 Gene3D G3DSA:2.70.150.10 32 240 9.8E-291 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 Pfam PF00702 haloacid dehalogenase-like hydrolase 334 652 1.8E-23 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 SUPERFAMILY SSF56784 336 741 2.7E-61 T 11-10-2018 IPR036412 HAD-like superfamily BED32_18275 144d18fb95ef39b70ed7721516432169 903 Gene3D G3DSA:1.20.1110.10 68 893 9.8E-291 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 Pfam PF00122 E1-E2 ATPase 125 318 1.4E-54 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 Pfam PF00690 Cation transporter/ATPase, N-terminus 18 84 4.5E-22 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 606 728 1.7E-35 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 97 359 5.4E-41 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 SUPERFAMILY SSF81653 127 237 1.18E-30 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 Pfam PF00689 Cation transporting ATPase, C-terminus 723 894 2.1E-42 T 11-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 SMART SM00831 17 90 1.3E-35 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 SUPERFAMILY SSF81665 17 898 2.62E-119 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 610 626 2.7E-18 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 638 654 2.7E-18 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 670 695 2.7E-18 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 495 513 2.7E-18 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 338 352 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 537 548 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 175 189 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 662 674 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 657 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 559 569 1.3E-40 T 11-10-2018 BED32_18275 144d18fb95ef39b70ed7721516432169 903 Gene3D G3DSA:3.40.1110.10 348 544 9.8E-291 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 SUPERFAMILY SSF81660 345 541 1.07E-46 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_18275 144d18fb95ef39b70ed7721516432169 903 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 340 346 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Pfam PF00391 PEP-utilising enzyme, mobile domain 386 457 1.2E-26 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Gene3D G3DSA:3.20.20.60 480 792 4.2E-99 T 11-10-2018 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 484 787 6.2E-59 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 SUPERFAMILY SSF56059 10 386 1.77E-105 T 11-10-2018 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 696 714 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 SUPERFAMILY SSF51621 470 790 1.49E-95 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Gene3D G3DSA:3.30.1490.20 9 197 9.2E-70 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 349 3.7E-118 T 11-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Gene3D G3DSA:3.30.470.20 198 359 2.7E-60 T 11-10-2018 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 SUPERFAMILY SSF52009 350 468 2.49E-35 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 Gene3D G3DSA:3.50.30.10 373 479 5.7E-41 T 11-10-2018 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 416 427 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 PIRSF PIRSF000854 7 793 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 BED32_10780 241068f2314376bafd80f7b59b20cbcc 793 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 11 790 0.0 T 11-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 PIRSF PIRSF006288 24 892 0.0 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 892 342.032 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Pfam PF01966 HD domain 470 603 4.8E-14 T 11-10-2018 IPR006674 HD domain BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Pfam PF01842 ACT domain 817 871 2.1E-8 T 11-10-2018 IPR002912 ACT domain BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF109604 459 560 1.6E-13 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF81301 12 191 3.82E-24 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF81891 431 650 5.69E-9 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Pfam PF08335 GlnD PII-uridylyltransferase 195 333 9.0E-37 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF55021 707 761 9.99E-9 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF81593 211 330 1.18E-10 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SMART SM00471 466 613 2.1E-11 T 11-10-2018 IPR003607 HD/PDEase domain BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 SUPERFAMILY SSF55021 815 884 4.2E-10 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Pfam PF01909 Nucleotidyltransferase domain 88 126 1.7E-6 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 Gene3D G3DSA:1.10.3210.10 460 574 1.4E-7 T 11-10-2018 BED32_16900 9221471ea47f8ab6167350cb2ab3c5dc 892 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 56 886 8.9E-301 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 15 171 4.8E-26 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 418 571 1.0E-5 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 2.8E-7 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Gene3D G3DSA:1.10.730.10 8 791 0.0 T 11-10-2018 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.0E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Pfam PF08264 Anticodon-binding domain of tRNA 701 822 2.2E-16 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 403 2.7E-78 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 SUPERFAMILY SSF47323 662 859 5.61E-38 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Gene3D G3DSA:3.10.20.590 799 860 2.9E-25 T 11-10-2018 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.4 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 11-10-2018 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 SUPERFAMILY SSF52374 5 668 3.15E-140 T 11-10-2018 BED32_07445 ff3681dc63ef64b707a18b452c329fca 860 SUPERFAMILY SSF50677 226 415 2.72E-57 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_09315 a7188b29175dc1144a3b8784d39e48d4 232 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 63 77 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_09315 a7188b29175dc1144a3b8784d39e48d4 232 SUPERFAMILY SSF55120 13 227 4.16E-55 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_09315 a7188b29175dc1144a3b8784d39e48d4 232 Gene3D G3DSA:3.30.2350.10 10 230 8.1E-60 T 11-10-2018 BED32_09315 a7188b29175dc1144a3b8784d39e48d4 232 Pfam PF00849 RNA pseudouridylate synthase 25 181 2.9E-24 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 SMART SM00363 35 106 1.1E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 Pfam PF00849 RNA pseudouridylate synthase 101 231 4.4E-17 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 139 153 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 SUPERFAMILY SSF55120 101 265 6.99E-45 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 Gene3D G3DSA:3.30.2350.10 95 283 1.5E-53 T 11-10-2018 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 SUPERFAMILY SSF55174 35 129 1.85E-10 T 11-10-2018 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 105 265 2.1E-63 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 Gene3D G3DSA:3.10.290.10 31 93 3.4E-20 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_11975 2931d0bb8db66900fc52aa15f5d21231 349 Pfam PF01479 S4 domain 36 76 2.5E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 296 57.822 T 11-10-2018 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 SUPERFAMILY SSF46785 4 110 5.75E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 Gene3D G3DSA:1.10.10.10 2 83 1.2E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 Gene3D G3DSA:3.40.190.290 89 294 4.2E-63 T 11-10-2018 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 6.5E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 Pfam PF03466 LysR substrate binding domain 93 287 1.6E-12 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 SUPERFAMILY SSF53850 92 290 3.62E-19 T 11-10-2018 BED32_04485 9e81d8b0fc5b2f173cf79b5e332e6d40 297 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 5 293 6.9E-111 T 11-10-2018 IPR017685 HTH-type transcriptional regulator ArgP BED32_07205 65d9f03073fdc266aac1118dac8437ae 88 Gene3D G3DSA:3.30.160.390 1 88 1.6E-35 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily BED32_07205 65d9f03073fdc266aac1118dac8437ae 88 Pfam PF13356 Arm DNA-binding domain 3 87 1.2E-20 T 11-10-2018 IPR025166 Integrase, DNA-binding domain BED32_18360 8daf307e0cb000da5b161a1d2ed5e228 265 Pfam PF01026 TatD related DNase 5 256 9.2E-66 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_18360 8daf307e0cb000da5b161a1d2ed5e228 265 Gene3D G3DSA:3.20.20.140 2 258 1.5E-83 T 11-10-2018 BED32_18360 8daf307e0cb000da5b161a1d2ed5e228 265 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 4 12 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_18360 8daf307e0cb000da5b161a1d2ed5e228 265 SUPERFAMILY SSF51556 4 258 2.6E-72 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_18360 8daf307e0cb000da5b161a1d2ed5e228 265 PIRSF PIRSF005902 1 260 5.4E-68 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 SUPERFAMILY SSF51735 1 306 2.07E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 309 49.086 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 Gene3D G3DSA:3.40.50.720 3 302 2.6E-120 T 11-10-2018 BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 Gene3D G3DSA:3.90.25.10 168 290 2.6E-120 T 11-10-2018 BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 308 9.5E-136 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 BED32_20955 1247dfa1abbd5df4f7f204b708fd4e9e 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 2.6E-47 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 9.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 9.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 9.6E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 Gene3D G3DSA:1.10.10.10 11 100 2.6E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 Pfam PF03466 LysR substrate binding domain 96 301 1.7E-38 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 SUPERFAMILY SSF53850 95 304 9.77E-42 T 11-10-2018 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 Gene3D G3DSA:3.40.190.290 101 300 2.9E-55 T 11-10-2018 BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 SUPERFAMILY SSF46785 12 119 5.95E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01305 0a4d5955a1bc3cb5201efb8156d3380d 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 1.2E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Gene3D G3DSA:1.10.10.60 457 514 8.5E-27 T 11-10-2018 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 292 307 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 SMART SM00382 226 370 4.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 466 513 7.8E-28 T 11-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 SUPERFAMILY SSF46689 459 513 1.13E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 230 243 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Gene3D G3DSA:3.30.70.260 1 81 3.8E-26 T 11-10-2018 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 419 428 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Gene3D G3DSA:3.40.50.300 194 377 5.0E-60 T 11-10-2018 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 SMART SM00091 80 146 6.2E-7 T 11-10-2018 IPR000014 PAS domain BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Gene3D G3DSA:3.30.450.20 82 190 1.3E-29 T 11-10-2018 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Pfam PF00989 PAS fold 82 124 2.6E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Gene3D G3DSA:1.10.8.60 378 455 1.1E-18 T 11-10-2018 BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 SUPERFAMILY SSF52540 206 447 9.0E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 SUPERFAMILY SSF55785 81 173 1.58E-9 T 11-10-2018 IPR035965 PAS domain superfamily BED32_11120 65246b30a2c4f5e15ad5df305ffd9f77 525 Pfam PF00158 Sigma-54 interaction domain 207 372 1.1E-60 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 65 96 6.2 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 201 232 56.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 289 321 130.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 156 187 2.8E-4 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 330 362 8.1 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 115 147 2.0 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SMART SM00564 252 283 7.7E-6 T 11-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 Pfam PF13360 PQQ-like domain 78 320 3.0E-51 T 11-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 Gene3D G3DSA:2.130.10.10 21 392 2.2E-94 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 6 392 4.2E-135 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 SUPERFAMILY SSF50998 24 385 7.36E-76 T 11-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily BED32_15970 cf6debd650edf4e900f490a7d1079d15 393 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 2 393 40.82 T 11-10-2018 IPR017687 Outer membrane protein assembly factor BamB BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 SUPERFAMILY SSF52821 117 268 9.9E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 Gene3D G3DSA:3.40.250.10 124 271 6.4E-44 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 Hamap MF_00469 UPF0176 protein YceA [yceA]. 22 277 38.583 T 11-10-2018 IPR020936 Uncharacterised protein family UPF0176 BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 Gene3D G3DSA:3.30.70.100 13 118 4.5E-13 T 11-10-2018 BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 SMART SM00450 136 237 9.3E-27 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 Pfam PF12368 Rhodanase C-terminal 246 308 1.4E-19 T 11-10-2018 IPR022111 Rhodanase, C-terminal BED32_13250 f7a5712b594bb0c7cb6cc259717f49e2 350 Pfam PF00581 Rhodanese-like domain 138 233 2.2E-15 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_02490 8cc0e0d98e76a2255033068ccf953824 1284 Pfam PF13502 AsmA-like C-terminal region 1028 1270 2.0E-62 T 11-10-2018 IPR032712 AsmA-like, C-terminal BED32_02490 8cc0e0d98e76a2255033068ccf953824 1284 Pfam PF13116 Protein of unknown function 497 777 2.0E-98 T 11-10-2018 IPR025263 Domain of unknown function DUF3971 BED32_02490 8cc0e0d98e76a2255033068ccf953824 1284 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 1 1280 0.0 T 11-10-2018 IPR011836 Conserved hypothetical protein CHP02099 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Gene3D G3DSA:3.30.470.20 85 301 4.2E-86 T 11-10-2018 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Gene3D G3DSA:3.40.50.20 1 84 2.1E-32 T 11-10-2018 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 3 306 36.675 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 SUPERFAMILY SSF56059 97 302 1.61E-58 T 11-10-2018 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 SUPERFAMILY SSF52440 3 96 2.88E-29 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Pfam PF07478 D-ala D-ala ligase C-terminus 103 302 2.4E-68 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 4 305 1.3E-108 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Pfam PF01820 D-ala D-ala ligase N-terminus 4 86 2.0E-17 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 Gene3D G3DSA:3.30.1490.20 111 183 4.2E-86 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 63 74 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 PIRSF PIRSF039102 41 306 2.6E-94 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 PIRSF PIRSF039102 1 47 2.1E-7 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17870 cd56b7887f1042e0eff5f03032a862cc 306 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 248 276 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 SUPERFAMILY SSF54637 155 297 3.31E-43 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 165 298 2.4E-49 T 11-10-2018 IPR012660 Thioesterase, putative BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 SUPERFAMILY SSF55729 2 159 9.79E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 158 297 5.6E-50 T 11-10-2018 IPR012660 Thioesterase, putative BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 Pfam PF00583 Acetyltransferase (GNAT) family 25 122 1.6E-13 T 11-10-2018 IPR000182 GNAT domain BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 Gene3D G3DSA:3.40.630.30 2 145 3.7E-26 T 11-10-2018 BED32_21225 6d556f79fd083e981d210b62b5f02d94 307 Gene3D G3DSA:3.10.129.10 147 299 6.9E-46 T 11-10-2018 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 SMART SM00304 331 385 9.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 SMART SM00283 386 633 6.5E-79 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 484 511 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 513 542 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 561 590 1.7E-53 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 Pfam PF02743 Cache domain 42 292 1.4E-24 T 11-10-2018 IPR033479 Double Cache domain 1 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 SUPERFAMILY SSF58104 353 634 1.1E-71 T 11-10-2018 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 445 599 1.4E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 Gene3D G3DSA:1.10.287.950 331 634 1.7E-83 T 11-10-2018 BED32_21560 2be4568d8ec30130ef1fc4cb92d5c429 634 Gene3D G3DSA:3.30.450.20 35 204 8.2E-18 T 11-10-2018 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 53.334 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 SUPERFAMILY SSF56801 9 643 5.49E-190 T 11-10-2018 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 11-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 4.0E-26 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Gene3D G3DSA:3.40.50.12780 52 515 2.2E-104 T 11-10-2018 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Gene3D G3DSA:3.30.300.30 518 652 1.9E-33 T 11-10-2018 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 11-10-2018 IPR020845 AMP-binding, conserved site BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 2.9E-19 T 11-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 BED32_19695 197c6208d54fc5f37ba17a2282ab8606 652 Pfam PF00501 AMP-binding enzyme 83 522 1.5E-91 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BED32_15215 d1459547aaafe1ca633135a22e038c42 415 SUPERFAMILY SSF51197 2 413 8.06E-155 T 11-10-2018 BED32_15215 d1459547aaafe1ca633135a22e038c42 415 Gene3D G3DSA:2.60.120.330 1 415 1.8E-166 T 11-10-2018 IPR027443 Isopenicillin N synthase-like BED32_15215 d1459547aaafe1ca633135a22e038c42 415 Pfam PF07350 Protein of unknown function (DUF1479) 8 413 3.2E-146 T 11-10-2018 IPR010856 Protein of unknown function DUF1479 BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 Pfam PF12796 Ankyrin repeats (3 copies) 49 141 1.9E-8 T 11-10-2018 IPR020683 Ankyrin repeat-containing domain BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 SUPERFAMILY SSF48403 15 200 1.49E-33 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 Gene3D G3DSA:1.25.40.20 14 208 2.5E-30 T 11-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 SMART SM00248 43 72 330.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 SMART SM00248 143 172 0.066 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 SMART SM00248 110 139 200.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 SMART SM00248 76 105 26.0 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 BED32_16310 93bca1bbea13f99bf40e13ab7ff0486f 218 Pfam PF00023 Ankyrin repeat 144 175 0.014 T 11-10-2018 IPR002110 Ankyrin repeat GO:0005515 BED32_01490 bffc7f3f67d126cc4ccce1facfe63131 258 Pfam PF00561 alpha/beta hydrolase fold 16 241 2.3E-25 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_01490 bffc7f3f67d126cc4ccce1facfe63131 258 Gene3D G3DSA:3.40.50.1820 1 255 8.9E-75 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_01490 bffc7f3f67d126cc4ccce1facfe63131 258 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 4 254 47.132 T 11-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 BED32_01490 bffc7f3f67d126cc4ccce1facfe63131 258 SUPERFAMILY SSF53474 3 252 9.13E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_01490 bffc7f3f67d126cc4ccce1facfe63131 258 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 10 252 5.6E-106 T 11-10-2018 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 314 333 0.014 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 274 293 0.0013 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 294 313 0.0022 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 90 109 2.0E-5 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 234 253 0.03 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 110 129 6.1E-4 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 194 213 0.015 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 254 273 0.0075 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 214 233 1.5E-5 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 152 171 0.0062 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 130 149 1.1E-4 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SMART SM00364 172 191 1.9E-4 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 SUPERFAMILY SSF52058 71 341 3.85E-52 T 11-10-2018 BED32_00030 9ed35e62121db898796a46648d03ecd6 367 Gene3D G3DSA:3.80.10.10 34 344 7.0E-91 T 11-10-2018 IPR032675 Leucine-rich repeat domain superfamily BED32_00030 9ed35e62121db898796a46648d03ecd6 367 Pfam PF12468 Type III secretion system leucine rich repeat protein 8 63 1.5E-16 T 11-10-2018 IPR032674 LRR-containing bacterial E3 ligase, N-terminal MetaCyc: PWY-7511 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Gene3D G3DSA:3.10.20.740 1 127 8.2E-28 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Gene3D G3DSA:3.40.50.740 529 674 2.2E-10 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SMART SM00929 88 128 1.9E-19 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 661 9.8E-203 T 11-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Pfam PF00384 Molybdopterin oxidoreductase 553 637 4.1E-7 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SMART SM00926 221 275 2.4E-9 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SUPERFAMILY SSF54862 82 213 7.11E-34 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SUPERFAMILY SSF50692 821 896 4.29E-13 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 5.2E-10 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Gene3D G3DSA:2.20.25.90 221 275 9.5E-13 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Gene3D G3DSA:2.40.40.20 818 908 6.4E-9 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 2.6E-11 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SUPERFAMILY SSF53706 219 693 1.88E-79 T 11-10-2018 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 11-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Pfam PF01568 Molydopterin dinucleotide binding domain 832 896 3.8E-7 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 SUPERFAMILY SSF54292 1 77 9.86E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_14585 b21b6d3a2ace8986f3f04a134bca3d73 914 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 124 1.1E-14 T 11-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Gene3D G3DSA:2.60.120.260 14 226 3.0E-79 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SUPERFAMILY SSF49785 22 226 5.53E-68 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Gene3D G3DSA:3.20.20.80 350 638 5.6E-125 T 11-10-2018 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SUPERFAMILY SSF49303 637 746 3.6E-28 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Gene3D G3DSA:2.60.40.10 227 349 1.7E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Gene3D G3DSA:2.70.98.10 756 1047 4.9E-93 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SUPERFAMILY SSF51445 351 638 1.77E-100 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SUPERFAMILY SSF74650 758 1044 1.05E-95 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Gene3D G3DSA:2.60.40.10 641 749 3.5E-21 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Pfam PF02929 Beta galactosidase small chain 776 1042 5.1E-64 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 401 426 - T 11-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Pfam PF16353 Domain of unknown function(DUF4981) 655 743 3.2E-15 T 11-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SUPERFAMILY SSF49303 228 349 3.74E-20 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 SMART SM01038 772 1045 8.7E-125 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 463 477 - T 11-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 62 226 6.2E-63 T 11-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 351 644 1.8E-114 T 11-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Hamap MF_01687 Beta-galactosidase [lacZ]. 13 1047 17.596 T 11-10-2018 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 Pfam PF00703 Glycosyl hydrolases family 2 228 349 2.9E-11 T 11-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 PRINTS PR00132 Glycosyl hydrolase family 2 signature 547 562 5.0E-37 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 PRINTS PR00132 Glycosyl hydrolase family 2 signature 154 169 5.0E-37 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 PRINTS PR00132 Glycosyl hydrolase family 2 signature 360 374 5.0E-37 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 PRINTS PR00132 Glycosyl hydrolase family 2 signature 463 478 5.0E-37 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_09455 1472b6c7136b89cc28b7149557ca9c50 1050 PRINTS PR00132 Glycosyl hydrolase family 2 signature 391 409 5.0E-37 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 SUPERFAMILY SSF56059 83 347 8.08E-69 T 11-10-2018 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 SUPERFAMILY SSF52440 1 113 3.67E-46 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 323 2.5E-85 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Gene3D G3DSA:3.40.50.20 1 85 4.4E-34 T 11-10-2018 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Gene3D G3DSA:3.30.470.20 86 433 9.5E-158 T 11-10-2018 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 1.3E-43 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 447 3.1E-250 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 SUPERFAMILY SSF51246 331 444 1.31E-43 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Gene3D G3DSA:3.30.1490.20 131 203 9.5E-158 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 1.3E-38 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_02430 74aeca7268835c012f399b0bc72109f6 449 SMART SM00878 336 441 3.2E-65 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_01455 685623915aa710eab7a5b1df3e27363e 108 Gene3D G3DSA:3.40.250.10 1 108 8.3E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_01455 685623915aa710eab7a5b1df3e27363e 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 105 32.3 T 11-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 BED32_01455 685623915aa710eab7a5b1df3e27363e 108 SMART SM00450 7 102 3.8E-19 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_01455 685623915aa710eab7a5b1df3e27363e 108 SUPERFAMILY SSF52821 2 100 8.51E-28 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_01455 685623915aa710eab7a5b1df3e27363e 108 Pfam PF00581 Rhodanese-like domain 10 98 1.3E-14 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_04730 d277cff520738f4a7b9564c787b1f532 658 Gene3D G3DSA:3.40.50.300 14 267 6.3E-65 T 11-10-2018 BED32_04730 d277cff520738f4a7b9564c787b1f532 658 Pfam PF12704 MacB-like periplasmic core domain 285 501 1.8E-32 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_04730 d277cff520738f4a7b9564c787b1f532 658 SUPERFAMILY SSF52540 16 242 1.49E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04730 d277cff520738f4a7b9564c787b1f532 658 SMART SM00382 45 232 8.9E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04730 d277cff520738f4a7b9564c787b1f532 658 Pfam PF02687 FtsX-like permease family 564 651 1.8E-10 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_04730 d277cff520738f4a7b9564c787b1f532 658 Pfam PF00005 ABC transporter 36 184 1.3E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_04730 d277cff520738f4a7b9564c787b1f532 658 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 SUPERFAMILY SSF54913 1 112 2.13E-42 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 SMART SM00938 4 105 5.9E-61 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 83 103 3.1E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 2 17 3.1E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 23 41 3.1E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 PRINTS PR00340 P-II protein signature 52 75 3.1E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 PIRSF PIRSF039144 1 112 4.6E-53 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-41 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_06150 70eb157966fa0ccc6e1de75f03e8f716 112 Gene3D G3DSA:3.30.70.120 1 112 9.8E-45 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 Gene3D G3DSA:3.20.20.10 11 215 5.8E-110 T 11-10-2018 IPR029066 PLP-binding barrel BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 SUPERFAMILY SSF51419 10 233 8.41E-62 T 11-10-2018 IPR029066 PLP-binding barrel BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 248 263 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 155 166 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 121 133 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 27 43 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 190 217 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 338 351 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 265 280 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 61 79 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 PRINTS PR00992 Alanine racemase signature 286 303 9.1E-71 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 32 42 - T 11-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 SUPERFAMILY SSF50621 227 352 6.28E-42 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 TIGRFAM TIGR00492 alr: alanine racemase 5 352 2.6E-117 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 SMART SM01005 232 356 8.5E-58 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 Gene3D G3DSA:2.40.37.10 10 351 5.8E-110 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 Hamap MF_01201 Alanine racemase. 2 356 31.993 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 1.6E-64 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_12300 33b9867b18f12984790f334cbc7ffdee 363 Pfam PF00842 Alanine racemase, C-terminal domain 232 352 9.2E-39 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_06305 827d032d489442565381941493ac3a9e 622 Pfam PF00183 Hsp90 protein 212 621 1.9E-126 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BED32_06305 827d032d489442565381941493ac3a9e 622 Hamap MF_00505 Chaperone protein HtpG [htpG]. 2 621 32.924 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BED32_06305 827d032d489442565381941493ac3a9e 622 SUPERFAMILY SSF110942 508 621 5.62E-36 T 11-10-2018 IPR037196 HSP90, C-terminal domain BED32_06305 827d032d489442565381941493ac3a9e 622 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 182 1.9E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_06305 827d032d489442565381941493ac3a9e 622 SMART SM00387 27 184 1.1E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 172 189 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 75 92 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 120 142 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 26 48 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 93 110 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 190 208 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 PRINTS PR00775 90kDa heat shock protein signature 5 25 2.0E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal BED32_06305 827d032d489442565381941493ac3a9e 622 Gene3D G3DSA:3.30.565.10 1 215 4.8E-79 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_06305 827d032d489442565381941493ac3a9e 622 Gene3D G3DSA:3.30.230.80 227 399 3.0E-70 T 11-10-2018 BED32_06305 827d032d489442565381941493ac3a9e 622 SUPERFAMILY SSF54211 228 483 8.34E-101 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_06305 827d032d489442565381941493ac3a9e 622 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 25 34 - T 11-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 BED32_06305 827d032d489442565381941493ac3a9e 622 SUPERFAMILY SSF55874 4 212 4.45E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_06305 827d032d489442565381941493ac3a9e 622 Gene3D G3DSA:1.20.120.790 491 622 8.4E-47 T 11-10-2018 IPR037196 HSP90, C-terminal domain BED32_06305 827d032d489442565381941493ac3a9e 622 Gene3D G3DSA:3.40.50.11260 400 490 6.7E-37 T 11-10-2018 BED32_06305 827d032d489442565381941493ac3a9e 622 PIRSF PIRSF002583 1 622 3.7E-217 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 218 1.8E-85 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 Gene3D G3DSA:1.10.286.10 1 84 1.1E-39 T 11-10-2018 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 SUPERFAMILY SSF55620 5 219 8.89E-75 T 11-10-2018 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 144 154 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.139 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 Gene3D G3DSA:3.30.1130.10 85 220 3.0E-54 T 11-10-2018 BED32_08425 b845fb8243df0b774f71e9802eb0616c 220 Pfam PF01227 GTP cyclohydrolase I 38 216 2.8E-63 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 BED32_17130 1cd346f487406032266a1e1b6f411f99 386 Gene3D G3DSA:1.20.1250.20 3 197 3.4E-34 T 11-10-2018 BED32_17130 1cd346f487406032266a1e1b6f411f99 386 SUPERFAMILY SSF103473 3 378 2.09E-58 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17130 1cd346f487406032266a1e1b6f411f99 386 Pfam PF07690 Major Facilitator Superfamily 8 311 6.1E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_17130 1cd346f487406032266a1e1b6f411f99 386 Gene3D G3DSA:1.20.1250.20 198 382 3.2E-14 T 11-10-2018 BED32_11565 be53ddbf27cc325c8f918be630f4b2e1 209 Pfam PF04205 FMN-binding domain 100 187 3.8E-17 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 BED32_11565 be53ddbf27cc325c8f918be630f4b2e1 209 PIRSF PIRSF006091 1 202 1.6E-72 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 BED32_11565 be53ddbf27cc325c8f918be630f4b2e1 209 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 2 194 26.903 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 BED32_11565 be53ddbf27cc325c8f918be630f4b2e1 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 1.2E-66 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 BED32_11565 be53ddbf27cc325c8f918be630f4b2e1 209 SMART SM00900 100 192 1.1E-34 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 288 6.9E-12 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 Gene3D G3DSA:1.10.287.470 94 185 1.2E-13 T 11-10-2018 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 Gene3D G3DSA:2.40.50.100 59 93 1.2E-13 T 11-10-2018 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 Gene3D G3DSA:2.40.30.170 231 351 3.3E-36 T 11-10-2018 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 Pfam PF00529 HlyD membrane-fusion protein of T1SS 35 346 1.4E-15 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 SUPERFAMILY SSF111369 56 112 1.05E-6 T 11-10-2018 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 SUPERFAMILY SSF111369 193 268 2.88E-8 T 11-10-2018 BED32_05135 68f06b5bf3ff4ce675d822fdd7eee88a 389 TIGRFAM TIGR00998 8a0101: efflux pump membrane protein 20 344 2.6E-130 T 11-10-2018 IPR005694 Efflux pump membrane protein Emr GO:0006855|GO:0015238 BED32_01830 2f75b5a735809073a06552c84ac49513 119 Pfam PF02635 DsrE/DsrF-like family 4 119 1.2E-23 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein BED32_01830 2f75b5a735809073a06552c84ac49513 119 Hamap MF_00389 Protein TusC [tusC]. 1 119 36.276 T 11-10-2018 IPR037450 Sulphur relay, TusC BED32_01830 2f75b5a735809073a06552c84ac49513 119 Gene3D G3DSA:3.40.1260.10 1 119 1.7E-38 T 11-10-2018 IPR027396 DsrEFH-like BED32_01830 2f75b5a735809073a06552c84ac49513 119 SUPERFAMILY SSF75169 1 119 1.0E-37 T 11-10-2018 IPR027396 DsrEFH-like BED32_01830 2f75b5a735809073a06552c84ac49513 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 4 119 1.7E-47 T 11-10-2018 IPR017462 Sulphur relay, TusC/DsrF BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 SUPERFAMILY SSF55874 388 505 9.56E-19 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 SMART SM00387 418 508 2.4E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 Pfam PF07730 Histidine kinase 315 379 4.0E-14 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 506 6.2E-7 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 Gene3D G3DSA:3.30.565.10 381 506 1.5E-25 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09205 41bdf0cab0e3c3bd369fff09d1bbab25 525 Pfam PF05231 MASE1 9 280 9.6E-35 T 11-10-2018 IPR007895 MASE1 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 Pfam PF02378 Phosphotransferase system, EIIC 18 278 3.2E-19 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 9 344 5.9E-183 T 11-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 Gene3D G3DSA:3.40.50.2300 368 473 1.5E-35 T 11-10-2018 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 SUPERFAMILY SSF52794 380 470 6.8E-22 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 501 636 3.4E-34 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 382 457 3.1E-9 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 542 558 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 Gene3D G3DSA:3.40.930.10 493 640 1.2E-54 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_20735 4a9c506c9a2fb3ce65ac0fb8d47edefa 640 SUPERFAMILY SSF55804 499 637 1.83E-41 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 SUPERFAMILY SSF82607 11 104 6.67E-35 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 PIRSF PIRSF004555 3 110 1.0E-38 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 106 1.6E-41 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 99 22.535 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 2.6E-35 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family BED32_06295 5fe963213b00e234ab5a1193dda7981e 110 Gene3D G3DSA:3.30.1310.10 1 110 3.0E-47 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily BED32_14185 fed7390f948ea9dfaa779f7c89801b5f 362 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 149 356 3.5E-39 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_14185 fed7390f948ea9dfaa779f7c89801b5f 362 Gene3D G3DSA:1.10.3720.10 119 351 2.5E-18 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14185 fed7390f948ea9dfaa779f7c89801b5f 362 SUPERFAMILY SSF161098 126 343 6.15E-15 T 11-10-2018 IPR035906 MetI-like superfamily BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 2 381 5.6E-123 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 255 280 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 Gene3D G3DSA:2.60.120.10 6 275 6.5E-146 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 Pfam PF01238 Phosphomannose isomerase type I 1 356 4.2E-104 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 Gene3D G3DSA:2.60.120.10 301 381 6.5E-146 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PIRSF PIRSF001480 1 391 3.8E-111 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 220 235 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 255 274 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 274 293 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 PRINTS PR00714 Phosphomannose isomerase type I signature 236 255 5.3E-73 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 SUPERFAMILY SSF51182 1 374 1.59E-105 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_11425 1187218847f0a4e4ac7b447a8c6906a2 391 Gene3D G3DSA:1.10.441.10 150 300 6.5E-146 T 11-10-2018 BED32_09110 2951b8aec97e5bbdbb147c8c3c93808a 275 Pfam PF07024 ImpE protein 144 260 4.1E-41 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type BED32_09110 2951b8aec97e5bbdbb147c8c3c93808a 275 SUPERFAMILY SSF144059 5 266 3.79E-84 T 11-10-2018 BED32_09110 2951b8aec97e5bbdbb147c8c3c93808a 275 Gene3D G3DSA:1.25.40.10 6 89 2.0E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_09110 2951b8aec97e5bbdbb147c8c3c93808a 275 PIRSF PIRSF029288 1 267 2.8E-90 T 11-10-2018 IPR009211 Predicted virulence protein, SciE type BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 Gene3D G3DSA:2.40.50.100 32 99 3.3E-10 T 11-10-2018 BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 SUPERFAMILY SSF111369 31 192 3.27E-20 T 11-10-2018 BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 31 236 6.4E-29 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 Hamap MF_01544 p-hydroxybenzoic acid efflux pump subunit AaeA [aaeA]. 1 296 53.414 T 11-10-2018 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 Pfam PF13533 Biotin-lipoyl like 32 80 3.2E-17 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 Gene3D G3DSA:2.40.30.170 156 279 7.2E-22 T 11-10-2018 BED32_02565 dbb7f5922c10139543a5e2221bd30adf 296 Pfam PF13437 HlyD family secretion protein 141 225 8.4E-10 T 11-10-2018 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Gene3D G3DSA:1.10.8.60 351 437 1.8E-35 T 11-10-2018 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SUPERFAMILY SSF52540 436 747 4.55E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 732 0.0 T 11-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 517 535 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SUPERFAMILY SSF52540 168 425 1.06E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Gene3D G3DSA:3.40.50.300 438 651 6.6E-79 T 11-10-2018 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SMART SM01086 652 743 1.8E-34 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Gene3D G3DSA:1.10.1780.10 1 143 6.3E-45 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SMART SM00382 486 653 6.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SMART SM00382 205 351 1.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 301 313 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 9.6E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 9.6E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 9.6E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 9.6E-36 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Gene3D G3DSA:1.10.8.60 652 757 2.0E-35 T 11-10-2018 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 210 341 1.1E-12 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 652 732 5.0E-24 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.1E-14 T 11-10-2018 IPR004176 Clp, N-terminal BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Gene3D G3DSA:3.40.50.300 157 349 1.2E-63 T 11-10-2018 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 646 1.1E-48 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_13780 55f998ce1cb1f90f4800faf23a0442aa 758 SUPERFAMILY SSF81923 1 141 2.49E-58 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 SUPERFAMILY SSF56784 4 185 1.6E-45 T 11-10-2018 IPR036412 HAD-like superfamily BED32_04935 e114c26cf999bd89082ea23f225ea178 188 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 104 164 1.0E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 5 185 3.2E-60 T 11-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase BED32_04935 e114c26cf999bd89082ea23f225ea178 188 Gene3D G3DSA:1.10.150.240 18 89 3.1E-48 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 122 183 7.5E-15 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 3.2E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 3.2E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 4.7E-31 T 11-10-2018 BED32_04935 e114c26cf999bd89082ea23f225ea178 188 Gene3D G3DSA:3.40.50.1000 7 185 3.1E-48 T 11-10-2018 IPR023214 HAD superfamily BED32_16485 0e043c8e02f910ac131b9375c1a41514 164 Hamap MF_01954 Urease subunit beta [ureB]. 35 135 29.254 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16485 0e043c8e02f910ac131b9375c1a41514 164 Gene3D G3DSA:2.10.150.10 34 147 6.3E-50 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16485 0e043c8e02f910ac131b9375c1a41514 164 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 38 133 3.2E-40 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16485 0e043c8e02f910ac131b9375c1a41514 164 Pfam PF00699 Urease beta subunit 39 133 1.5E-40 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16485 0e043c8e02f910ac131b9375c1a41514 164 SUPERFAMILY SSF51278 38 139 8.76E-43 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 Gene3D G3DSA:3.30.420.40 242 483 2.0E-92 T 11-10-2018 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 TIGRFAM TIGR01312 XylB: xylulokinase 3 477 3.4E-183 T 11-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 435 4.7E-31 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 1.0E-81 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 SUPERFAMILY SSF53067 2 242 6.08E-74 T 11-10-2018 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 PIRSF PIRSF000538 1 485 3.1E-137 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 SUPERFAMILY SSF53067 242 482 1.58E-65 T 11-10-2018 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_20615 22450cc2f93ff50855be0801709e50cc 486 Gene3D G3DSA:3.30.420.40 1 241 6.2E-93 T 11-10-2018 BED32_10305 76e95e1562240fe9d550268a67699802 228 Gene3D G3DSA:3.30.750.120 1 114 1.4E-41 T 11-10-2018 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily BED32_10305 76e95e1562240fe9d550268a67699802 228 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 6 227 1.2E-72 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BED32_10305 76e95e1562240fe9d550268a67699802 228 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 1.5E-34 T 11-10-2018 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 BED32_10305 76e95e1562240fe9d550268a67699802 228 SUPERFAMILY SSF63848 122 227 5.75E-31 T 11-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 BED32_10305 76e95e1562240fe9d550268a67699802 228 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 5 228 28.673 T 11-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 BED32_10305 76e95e1562240fe9d550268a67699802 228 Gene3D G3DSA:2.160.20.70 119 228 1.7E-28 T 11-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 BED32_10305 76e95e1562240fe9d550268a67699802 228 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 124 224 2.0E-30 T 11-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 BED32_08380 41ec4e40fa6f5e97e6a03082b970817f 436 Gene3D G3DSA:3.20.20.70 73 436 3.4E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_08380 41ec4e40fa6f5e97e6a03082b970817f 436 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 328 418 7.4E-12 T 11-10-2018 IPR023885 4Fe4S-binding SPASM domain BED32_08380 41ec4e40fa6f5e97e6a03082b970817f 436 Pfam PF04055 Radical SAM superfamily 80 245 7.0E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_08380 41ec4e40fa6f5e97e6a03082b970817f 436 SUPERFAMILY SSF102114 75 400 4.05E-37 T 11-10-2018 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 PIRSF PIRSF002599 1 70 4.7E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 PRINTS PR00050 Cold shock protein signature 7 22 1.0E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 PRINTS PR00050 Cold shock protein signature 43 61 1.0E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 PRINTS PR00050 Cold shock protein signature 28 37 1.0E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.1E-32 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 SUPERFAMILY SSF50249 3 69 2.57E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 Gene3D G3DSA:2.40.50.140 2 69 1.9E-29 T 11-10-2018 BED32_02390 72f9ba88ce9852eaa28b4df20400dc26 70 SMART SM00357 6 70 1.5E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_21925 149179df88e4513c0f55c90a39800486 154 Gene3D G3DSA:2.10.109.10 38 152 3.5E-9 T 11-10-2018 BED32_21925 149179df88e4513c0f55c90a39800486 154 Pfam PF10502 Signal peptidase, peptidase S26 54 145 1.3E-17 T 11-10-2018 IPR019533 Peptidase S26 BED32_21925 149179df88e4513c0f55c90a39800486 154 SUPERFAMILY SSF51306 42 144 1.99E-16 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 2.0E-16 T 11-10-2018 BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.743 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.7E-24 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 11-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 5.8E-30 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 SUPERFAMILY SSF54747 3 73 2.49E-30 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 SUPERFAMILY SSF46906 68 141 5.76E-26 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 7.6E-65 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 Gene3D G3DSA:1.10.10.250 73 141 7.3E-27 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 Gene3D G3DSA:3.30.1550.10 2 72 2.1E-35 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily BED32_19855 17a13e1e5a175a39d934fdf96b71346b 142 SMART SM00649 9 141 2.0E-83 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF04545 Sigma-70, region 4 547 600 1.0E-18 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 572 598 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 612 46.983 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF04542 Sigma-70 region 2 379 448 1.7E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 375 611 7.8E-121 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 PRINTS PR00046 Major sigma-70 factor signature 427 435 6.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 PRINTS PR00046 Major sigma-70 factor signature 572 587 6.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 PRINTS PR00046 Major sigma-70 factor signature 551 563 6.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 PRINTS PR00046 Major sigma-70 factor signature 587 598 6.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 PRINTS PR00046 Major sigma-70 factor signature 403 416 6.3E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 403 416 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Gene3D G3DSA:1.10.220.120 1 64 5.3E-31 T 11-10-2018 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Gene3D G3DSA:1.10.601.10 113 448 3.9E-148 T 11-10-2018 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 375 600 3.5E-38 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Gene3D G3DSA:1.10.10.10 452 528 5.5E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF04539 Sigma-70 region 3 458 533 3.5E-29 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Gene3D G3DSA:1.10.10.10 529 613 1.8E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF04546 Sigma-70, non-essential region 139 348 9.0E-75 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 SUPERFAMILY SSF88946 115 446 4.06E-102 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 SUPERFAMILY SSF88659 509 611 2.32E-25 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_03400 11ec0d796426215b0182ee260ac4d005 613 SUPERFAMILY SSF88659 452 525 1.54E-20 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF03979 Sigma-70 factor, region 1.1 4 79 2.0E-30 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 BED32_03400 11ec0d796426215b0182ee260ac4d005 613 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.8E-12 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_14925 2c973360125f0aa266a3ddf19cb9167c 163 SUPERFAMILY SSF53254 1 143 1.28E-17 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14925 2c973360125f0aa266a3ddf19cb9167c 163 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 73 3.4E-7 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_14925 2c973360125f0aa266a3ddf19cb9167c 163 Gene3D G3DSA:3.40.50.1240 1 161 4.3E-39 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14925 2c973360125f0aa266a3ddf19cb9167c 163 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 153 9.0E-50 T 11-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 Gene3D G3DSA:1.10.10.10 145 208 2.0E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 7.9E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 7.9E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 7.9E-8 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 Hamap MF_00981 Transcriptional regulatory protein RcsB [rcsB]. 1 214 51.611 T 11-10-2018 IPR030864 Transcriptional regulatory protein RcsB GO:0000160|GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 Gene3D G3DSA:3.40.50.2300 1 144 2.8E-30 T 11-10-2018 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 SUPERFAMILY SSF52172 3 136 2.56E-22 T 11-10-2018 IPR011006 CheY-like superfamily BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 SMART SM00421 148 205 2.3E-14 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.4E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 SMART SM00448 4 120 4.3E-15 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 SUPERFAMILY SSF46894 144 206 1.97E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_14395 af8cc790824ddb9e0acfdf1fb3bd2dbb 215 Pfam PF00072 Response regulator receiver domain 6 120 7.9E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 Gene3D G3DSA:3.30.420.460 351 552 2.6E-122 T 11-10-2018 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 SUPERFAMILY SSF53067 20 299 1.96E-23 T 11-10-2018 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 TIGRFAM TIGR01234 L-ribulokinase: ribulokinase 17 563 2.8E-227 T 11-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 SUPERFAMILY SSF53067 300 559 2.59E-46 T 11-10-2018 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 PIRSF PIRSF000538 16 570 7.3E-42 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 19 157 1.7E-6 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 Gene3D G3DSA:3.30.420.40 20 541 2.6E-122 T 11-10-2018 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 306 516 1.5E-37 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BED32_11490 956ca73d730c5ea288f726b709c8202c 571 Hamap MF_00520 Ribulokinase [araB]. 16 571 51.389 T 11-10-2018 IPR005929 Ribulokinase GO:0005524|GO:0008741|GO:0019569 KEGG: 00040+2.7.1.16 BED32_01175 d0fc33bbacde8d0bea8b0ce7144d33b9 275 SUPERFAMILY SSF52980 10 170 3.27E-51 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_01175 d0fc33bbacde8d0bea8b0ce7144d33b9 275 Gene3D G3DSA:3.40.1350.10 9 172 3.8E-53 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 BED32_01175 d0fc33bbacde8d0bea8b0ce7144d33b9 275 Pfam PF08722 TnsA endonuclease N terminal 76 167 3.3E-22 T 11-10-2018 IPR014833 TnsA endonuclease, N-terminal BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 Gene3D G3DSA:3.40.50.2300 1 127 1.1E-37 T 11-10-2018 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 SUPERFAMILY SSF46894 129 226 7.94E-32 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.1E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 SMART SM00862 150 225 5.5E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 Pfam PF00072 Response regulator receiver domain 5 117 1.3E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 SMART SM00448 3 116 6.1E-44 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 2.5E-114 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 SUPERFAMILY SSF52172 3 126 1.57E-42 T 11-10-2018 IPR011006 CheY-like superfamily BED32_05855 846aca97fd79398e5810c8dcf0c9cb4a 229 Gene3D G3DSA:1.10.10.10 128 229 1.9E-41 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 SMART SM00926 40 94 6.7E-16 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 2 23 4.2E-6 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Pfam PF01568 Molydopterin dinucleotide binding domain 715 823 8.9E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 28 7.3E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Pfam PF00384 Molybdopterin oxidoreductase 97 569 1.3E-90 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Gene3D G3DSA:2.40.40.20 705 829 4.0E-48 T 11-10-2018 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Gene3D G3DSA:3.40.50.740 97 624 0.0 T 11-10-2018 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 829 32.371 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 SUPERFAMILY SSF53706 37 702 6.02E-203 T 11-10-2018 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Gene3D G3DSA:3.30.200.210 40 667 0.0 T 11-10-2018 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Gene3D G3DSA:3.40.228.10 176 704 0.0 T 11-10-2018 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 2 829 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 SUPERFAMILY SSF50692 689 828 9.04E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 40 93 9.6E-18 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_15500 6e0d44e0fa5692e78e7b6c8998966e57 831 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 45 62 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Gene3D G3DSA:3.40.50.300 1 195 9.4E-67 T 11-10-2018 BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 SUPERFAMILY SSF52540 59 342 6.35E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Gene3D G3DSA:3.40.50.300 202 373 2.7E-47 T 11-10-2018 BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 SMART SM00487 8 205 4.8E-56 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Gene3D G3DSA:3.30.70.330 374 444 3.3E-21 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 137 145 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 SMART SM00490 241 322 2.9E-30 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Pfam PF00270 DEAD/DEAH box helicase 13 178 6.7E-44 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Hamap MF_00965 ATP-dependent RNA helicase DbpA [dbpA]. 1 445 70.785 T 11-10-2018 IPR028619 ATP-dependent RNA helicase DbpA GO:0000027|GO:0003724 BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Pfam PF03880 DbpA RNA binding domain 372 442 3.2E-24 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BED32_12660 48181a810a43a50696c3a104e6caaf2b 445 Pfam PF00271 Helicase conserved C-terminal domain 222 322 1.5E-27 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 270 282 - T 11-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 193 1.5E-77 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PIRSF PIRSF000904 1 333 6.1E-121 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 SUPERFAMILY SSF56655 2 327 1.83E-109 T 11-10-2018 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 205 232 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 179 202 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 64 90 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 148 171 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 304 329 2.5E-71 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 PIRSF PIRSF500210 1 332 8.5E-124 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 Gene3D G3DSA:3.30.540.10 1 195 1.8E-71 T 11-10-2018 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 330 41.921 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 BED32_19055 a2a050de9b0436fb7d51b1ba3cba9d5c 337 Gene3D G3DSA:3.40.190.80 197 334 8.3E-59 T 11-10-2018 BED32_08785 db3641a58bcb9203c6fc744461371163 476 Pfam PF00929 Exonuclease 12 191 1.1E-25 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_08785 db3641a58bcb9203c6fc744461371163 476 Pfam PF08411 Exonuclease C-terminal 211 472 1.3E-108 T 11-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 BED32_08785 db3641a58bcb9203c6fc744461371163 476 Gene3D G3DSA:1.20.1280.70 359 420 3.6E-27 T 11-10-2018 BED32_08785 db3641a58bcb9203c6fc744461371163 476 PIRSF PIRSF000977 2 476 4.9E-204 T 11-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 BED32_08785 db3641a58bcb9203c6fc744461371163 476 Gene3D G3DSA:2.30.30.450 213 353 6.4E-59 T 11-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily BED32_08785 db3641a58bcb9203c6fc744461371163 476 Gene3D G3DSA:3.30.420.10 1 200 3.8E-71 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_08785 db3641a58bcb9203c6fc744461371163 476 SUPERFAMILY SSF53098 8 474 2.21E-135 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_05645 38e2169249f4b876a75ad107fcc1426b 193 Pfam PF13580 SIS domain 14 146 6.5E-32 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_05645 38e2169249f4b876a75ad107fcc1426b 193 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 2.4E-83 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 BED32_05645 38e2169249f4b876a75ad107fcc1426b 193 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 38.324 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 BED32_05645 38e2169249f4b876a75ad107fcc1426b 193 Gene3D G3DSA:3.40.50.10490 1 192 4.1E-72 T 11-10-2018 BED32_05645 38e2169249f4b876a75ad107fcc1426b 193 SUPERFAMILY SSF53697 1 189 4.25E-52 T 11-10-2018 BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 Gene3D G3DSA:3.40.190.10 34 308 1.3E-111 T 11-10-2018 BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 126 143 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 Pfam PF13343 Bacterial extracellular solute-binding protein 81 308 9.3E-26 T 11-10-2018 BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 Gene3D G3DSA:3.40.190.10 128 313 1.3E-111 T 11-10-2018 BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 PIRSF PIRSF002825 3 338 4.8E-82 T 11-10-2018 IPR026045 Ferric binding protein BED32_15170 73d28ccbb1297d3c55a3c4a7c4af3878 338 SUPERFAMILY SSF53850 33 331 9.06E-74 T 11-10-2018 BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 SUPERFAMILY SSF53686 10 321 5.63E-93 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 Gene3D G3DSA:3.40.50.1100 57 153 2.3E-124 T 11-10-2018 BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 Gene3D G3DSA:3.40.50.1100 14 317 2.3E-124 T 11-10-2018 BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 TIGRFAM TIGR01127 ilvA_1Cterm: threonine ammonia-lyase 28 323 1.2E-118 T 11-10-2018 IPR005789 Threonine dehydratase, catabolic GO:0004794|GO:0006567 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BED32_19410 2a42cd10a6b9f279ed6f189b68cca227 330 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 22 312 3.0E-78 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_18445 18417111e22382e4d2009c509e069718 456 SUPERFAMILY SSF55604 6 82 2.48E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_18445 18417111e22382e4d2009c509e069718 456 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_18445 18417111e22382e4d2009c509e069718 456 Gene3D G3DSA:3.30.1360.60 1 77 1.9E-25 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_18445 18417111e22382e4d2009c509e069718 456 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 28 111 1.4E-21 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BED32_18445 18417111e22382e4d2009c509e069718 456 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 153 437 3.0E-89 T 11-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 BED32_18445 18417111e22382e4d2009c509e069718 456 Pfam PF00367 phosphotransferase system, EIIB 9 40 4.9E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_18445 18417111e22382e4d2009c509e069718 456 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 3 448 2.5E-192 T 11-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 BED32_18445 18417111e22382e4d2009c509e069718 456 Pfam PF02378 Phosphotransferase system, EIIC 110 395 6.2E-48 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Gene3D G3DSA:3.40.50.300 9 436 7.3E-165 T 11-10-2018 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Pfam PF13361 UvrD-like helicase C-terminal domain 541 809 3.5E-19 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Gene3D G3DSA:1.10.3170.10 156 349 7.3E-165 T 11-10-2018 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 SUPERFAMILY SSF52540 4 819 3.4E-109 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Gene3D G3DSA:3.40.50.300 445 846 3.7E-170 T 11-10-2018 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 SUPERFAMILY SSF52980 904 1187 8.04E-94 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Gene3D G3DSA:1.10.486.10 583 728 3.7E-170 T 11-10-2018 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 7 1186 23.1 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Pfam PF12705 PD-(D/E)XK nuclease superfamily 963 1157 7.0E-5 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Gene3D G3DSA:3.90.320.10 892 1191 6.8E-116 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1185 0.0 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 BED32_17025 9ac1b3fe99bcfac11ed56b7d4204bc58 1209 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 436 1.7E-60 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 5 537 28.08 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 Pfam PF00795 Carbon-nitrogen hydrolase 7 239 1.1E-25 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 PIRSF PIRSF006630 245 539 3.2E-120 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 PIRSF PIRSF006630 2 258 1.4E-80 T 11-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 Gene3D G3DSA:3.60.110.10 1 256 3.3E-87 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 Pfam PF02540 NAD synthase 264 511 3.0E-71 T 11-10-2018 IPR022310 NAD/GMP synthase BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 SUPERFAMILY SSF52402 258 520 1.26E-77 T 11-10-2018 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 511 4.3E-58 T 11-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 Gene3D G3DSA:3.40.50.620 261 539 1.1E-112 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 37 52 - T 11-10-2018 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 BED32_16155 48b6910c22c2c6c9fefcd779270e0296 540 SUPERFAMILY SSF56317 3 241 1.83E-60 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_12345 c5d677779c25a8cb7266b419be599fd0 254 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 2 204 27.863 T 11-10-2018 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 BED32_12345 c5d677779c25a8cb7266b419be599fd0 254 Pfam PF03932 CutC family 3 201 2.2E-72 T 11-10-2018 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 BED32_12345 c5d677779c25a8cb7266b419be599fd0 254 Gene3D G3DSA:3.20.20.380 1 249 3.1E-86 T 11-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BED32_12345 c5d677779c25a8cb7266b419be599fd0 254 SUPERFAMILY SSF110395 3 244 4.18E-75 T 11-10-2018 IPR036822 Copper homeostasis (CutC) domain superfamily GO:0005507|GO:0055070 Reactome: R-HSA-936837 BED32_00560 189d57093082fc905fa33b0e8324624f 186 PIRSF PIRSF039093 8 186 5.8E-88 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BED32_00560 189d57093082fc905fa33b0e8324624f 186 Gene3D G3DSA:3.60.20.10 12 185 3.0E-67 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_00560 189d57093082fc905fa33b0e8324624f 186 SUPERFAMILY SSF56235 14 184 3.66E-58 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_00560 189d57093082fc905fa33b0e8324624f 186 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 14 184 1.9E-86 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BED32_00560 189d57093082fc905fa33b0e8324624f 186 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 13 184 41.706 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 BED32_00560 189d57093082fc905fa33b0e8324624f 186 Pfam PF00227 Proteasome subunit 14 177 4.8E-22 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 BED32_02790 a7873c11d7fa3472fb126919c2ef1128 100 Pfam PF00874 PRD domain 20 93 2.1E-4 T 11-10-2018 IPR011608 PRD domain GO:0006355 BED32_02790 a7873c11d7fa3472fb126919c2ef1128 100 SUPERFAMILY SSF63520 11 99 1.7E-8 T 11-10-2018 IPR036634 PRD domain superfamily GO:0006355 BED32_02790 a7873c11d7fa3472fb126919c2ef1128 100 TIGRFAM TIGR03582 EF_0829: PRD domain protein, EF_0829/AHA_3910 family 9 98 4.0E-39 T 11-10-2018 IPR020044 PRD domain protein, EF0829/AHA3910 BED32_02790 a7873c11d7fa3472fb126919c2ef1128 100 Gene3D G3DSA:1.10.1790.10 2 99 5.5E-35 T 11-10-2018 BED32_10085 0142a2f0c07df60360d5136c72923f8a 157 SUPERFAMILY SSF52728 3 156 2.09E-51 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_10085 0142a2f0c07df60360d5136c72923f8a 157 Pfam PF03830 PTS system sorbose subfamily IIB component 4 149 9.3E-50 T 11-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 BED32_10085 0142a2f0c07df60360d5136c72923f8a 157 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 152 1.5E-69 T 11-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 BED32_10085 0142a2f0c07df60360d5136c72923f8a 157 Gene3D G3DSA:3.40.35.10 1 156 4.4E-53 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 SUPERFAMILY SSF53850 89 298 6.7E-40 T 11-10-2018 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 SUPERFAMILY SSF46785 2 112 2.28E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_08210 16cc83902e487921d8a0db016333ac3a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.0E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 Pfam PF03466 LysR substrate binding domain 89 294 5.7E-39 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_08210 16cc83902e487921d8a0db016333ac3a 304 Gene3D G3DSA:3.40.190.10 91 291 7.5E-58 T 11-10-2018 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 Gene3D G3DSA:1.10.10.10 2 90 1.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_08210 16cc83902e487921d8a0db016333ac3a 304 Gene3D G3DSA:3.40.190.10 164 265 7.5E-58 T 11-10-2018 BED32_08210 16cc83902e487921d8a0db016333ac3a 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.8E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 65 397 3.6E-76 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Gene3D G3DSA:2.40.420.20 306 399 4.2E-21 T 11-10-2018 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Pfam PF13533 Biotin-lipoyl like 90 138 4.5E-16 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Gene3D G3DSA:2.40.50.100 89 233 1.0E-68 T 11-10-2018 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 SUPERFAMILY SSF111369 82 321 5.1E-56 T 11-10-2018 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Gene3D G3DSA:2.40.30.170 83 305 1.0E-68 T 11-10-2018 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Gene3D G3DSA:1.10.287.470 124 197 1.0E-68 T 11-10-2018 BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Hamap MF_01422 Multidrug resistance protein MdtA [mdtA]. 4 421 53.899 T 11-10-2018 IPR022824 Multidrug resistance protein MdtA BED32_15750 443e2ee7b400fd9d119127bcc7c828c9 444 Pfam PF13437 HlyD family secretion protein 201 306 1.1E-6 T 11-10-2018 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 Gene3D G3DSA:3.40.50.150 159 339 2.1E-45 T 11-10-2018 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 336 44.929 T 11-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 SUPERFAMILY SSF53335 154 315 1.46E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 Gene3D G3DSA:3.40.50.150 1 158 4.9E-58 T 11-10-2018 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 Pfam PF05175 Methyltransferase small domain 167 333 1.6E-57 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BED32_18395 cdf7fe23e09936154d38a875d084a4d4 347 Pfam PF08468 Methyltransferase small domain N-terminal 8 162 1.4E-57 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 SUPERFAMILY SSF56281 1 251 8.78E-67 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 1 251 44.981 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 Gene3D G3DSA:3.60.15.10 1 251 4.0E-93 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 Pfam PF00753 Metallo-beta-lactamase superfamily 13 165 2.3E-15 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 PIRSF PIRSF005457 1 251 1.8E-88 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 251 3.7E-23 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 SMART SM00849 11 165 5.7E-38 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_16655 880de9a5ff8e04efc5fef7da6114061c 251 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 251 4.5E-103 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 SUPERFAMILY SSF50156 194 290 3.81E-17 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 SUPERFAMILY SSF50156 86 181 8.81E-12 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 Pfam PF02163 Peptidase family M50 10 439 7.1E-88 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 2 451 1.6E-160 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 Gene3D G3DSA:2.30.42.10 126 220 2.4E-33 T 11-10-2018 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 Gene3D G3DSA:2.30.42.10 221 310 1.8E-20 T 11-10-2018 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 SMART SM00228 211 280 1.1E-9 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 SMART SM00228 115 186 0.12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_16855 cc59d7abba2fdb7ac6d23c0ad95bdfc4 451 Pfam PF13180 PDZ domain 225 286 9.8E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_15930 60df56eefa446b091e506e6007a45220 525 SUPERFAMILY SSF54810 405 525 2.09E-51 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 2.0E-83 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BED32_15930 60df56eefa446b091e506e6007a45220 525 Pfam PF02540 NAD synthase 223 255 4.8E-6 T 11-10-2018 IPR022310 NAD/GMP synthase BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 5.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 5.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 5.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 Gene3D G3DSA:3.40.50.880 9 206 2.7E-55 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_15930 60df56eefa446b091e506e6007a45220 525 Pfam PF00117 Glutamine amidotransferase class-I 12 200 1.8E-39 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_15930 60df56eefa446b091e506e6007a45220 525 SUPERFAMILY SSF52402 194 446 2.65E-55 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 Gene3D G3DSA:3.30.300.10 406 525 1.3E-51 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 Pfam PF00958 GMP synthase C terminal domain 433 524 6.4E-44 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BED32_15930 60df56eefa446b091e506e6007a45220 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 213 525 1.7E-153 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 BED32_15930 60df56eefa446b091e506e6007a45220 525 Gene3D G3DSA:3.40.50.620 209 405 2.3E-72 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 8.9E-8 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 8.9E-8 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 8.9E-8 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 1.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.1E-6 T 11-10-2018 BED32_15930 60df56eefa446b091e506e6007a45220 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.879 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 BED32_15930 60df56eefa446b091e506e6007a45220 525 SUPERFAMILY SSF52317 4 204 9.34E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 PIRSF PIRSF001563 5 422 2.4E-111 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 SUPERFAMILY SSF53623 13 290 1.18E-85 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 Gene3D G3DSA:3.90.190.20 294 421 4.4E-39 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 Pfam PF02875 Mur ligase family, glutamate ligase domain 293 343 4.4E-7 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 Gene3D G3DSA:3.40.1190.10 1 293 1.3E-97 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 SUPERFAMILY SSF53244 292 418 3.66E-34 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 Pfam PF08245 Mur ligase middle domain 54 195 1.1E-8 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_14755 3be7b8f2b9c2168de034529a18c24ea5 422 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 418 4.9E-105 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 BED32_19815 7db205e511536cfc7de705b336e443fe 262 Pfam PF05690 Thiazole biosynthesis protein ThiG 3 248 4.8E-105 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BED32_19815 7db205e511536cfc7de705b336e443fe 262 SUPERFAMILY SSF110399 1 237 1.31E-81 T 11-10-2018 BED32_19815 7db205e511536cfc7de705b336e443fe 262 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 42.89 T 11-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 BED32_19815 7db205e511536cfc7de705b336e443fe 262 Gene3D G3DSA:3.20.20.70 1 254 7.9E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 958 25.388 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Pfam PF02347 Glycine cleavage system P-protein 16 439 3.1E-180 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Pfam PF02347 Glycine cleavage system P-protein 477 739 2.3E-8 T 11-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Gene3D G3DSA:3.40.640.10 525 756 3.6E-59 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Gene3D G3DSA:3.40.640.10 96 355 5.5E-97 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 SUPERFAMILY SSF53383 17 440 6.26E-98 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 952 0.0 T 11-10-2018 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 Gene3D G3DSA:3.90.1150.10 767 903 5.7E-42 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_17480 a331ec24d3e460a83e0ca6303b43bbe8 962 SUPERFAMILY SSF53383 477 953 4.96E-97 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_21320 7e75c0a6b6de6370c7d29e94fb573cfa 86 Pfam PF13518 Helix-turn-helix domain 16 55 2.0E-6 T 11-10-2018 BED32_21320 7e75c0a6b6de6370c7d29e94fb573cfa 86 SUPERFAMILY SSF48295 4 62 2.14E-12 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_19925 7e75c0a6b6de6370c7d29e94fb573cfa 86 Pfam PF13518 Helix-turn-helix domain 16 55 2.0E-6 T 11-10-2018 BED32_19925 7e75c0a6b6de6370c7d29e94fb573cfa 86 SUPERFAMILY SSF48295 4 62 2.14E-12 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_19155 686dd584f253d9999d7abe3a0494fcce 91 Pfam PF07338 Protein of unknown function (DUF1471) 37 91 2.6E-17 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_19155 686dd584f253d9999d7abe3a0494fcce 91 Gene3D G3DSA:3.30.1660.10 20 91 2.4E-19 T 11-10-2018 IPR025543 Dodecin-like BED32_19155 686dd584f253d9999d7abe3a0494fcce 91 SUPERFAMILY SSF159871 1 91 2.75E-24 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 SMART SM00244 99 259 1.4E-41 T 11-10-2018 IPR001107 Band 7 domain BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 Gene3D G3DSA:3.30.479.30 128 261 2.6E-18 T 11-10-2018 BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 PRINTS PR00721 Stomatin signature 106 128 1.9E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 PRINTS PR00721 Stomatin signature 188 205 1.9E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 PRINTS PR00721 Stomatin signature 153 174 1.9E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 TIGRFAM TIGR01933 hflK: HflK protein 101 360 2.6E-120 T 11-10-2018 IPR010201 HflK GO:0016021 BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 SUPERFAMILY SSF117892 132 263 6.8E-20 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 Pfam PF12221 Bacterial membrane protein N terminal 1 59 3.8E-11 T 11-10-2018 IPR020980 Menbrane protein HflK, N-terminal BED32_19210 09fd123733b2b84d0836d0f6f0e64c28 427 Pfam PF01145 SPFH domain / Band 7 family 103 274 1.3E-30 T 11-10-2018 IPR001107 Band 7 domain BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 Gene3D G3DSA:3.90.226.10 25 287 3.9E-88 T 11-10-2018 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 SUPERFAMILY SSF52096 25 283 5.91E-87 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 7.2E-147 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 Pfam PF01039 Carboxyl transferase domain 92 239 1.0E-18 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.6E-36 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.6E-36 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.6E-36 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.6E-36 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.6E-36 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_14760 dbf2045aba7b2869152af5210c977f2e 303 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 38.218 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 Gene3D G3DSA:2.30.40.10 15 403 2.7E-160 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 Hamap MF_00372 Imidazolonepropionase [hutI]. 8 406 41.342 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 Pfam PF01979 Amidohydrolase family 64 400 4.3E-16 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 SUPERFAMILY SSF51556 66 367 2.0E-84 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 SUPERFAMILY SSF51338 6 404 5.19E-27 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 Gene3D G3DSA:3.20.20.140 67 366 2.7E-160 T 11-10-2018 BED32_10015 46fa47a476bc1f79cfeb7537b1308a13 407 TIGRFAM TIGR01224 hutI: imidazolonepropionase 28 404 1.0E-160 T 11-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 122 139 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 214 226 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 160 176 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 140 158 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 178 195 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 241 263 1.3E-81 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 PIRSF PIRSF000532 1 327 2.4E-123 T 11-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 SUPERFAMILY SSF53784 3 315 3.27E-109 T 11-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 Pfam PF00365 Phosphofructokinase 4 277 8.2E-108 T 11-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 ProSitePatterns PS00433 Phosphofructokinase signature. 245 263 - T 11-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 302 1.9E-121 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 Gene3D G3DSA:3.40.50.460 144 253 4.2E-114 T 11-10-2018 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 Gene3D G3DSA:3.40.50.450 4 281 4.2E-114 T 11-10-2018 BED32_20860 dee1425a764e663c734380ab537d7ed4 327 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 327 45.202 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 Pfam PF01228 Glycine radical 630 741 3.5E-43 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 759 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 ProSitePatterns PS00850 Glycine radical domain signature. 730 738 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 Pfam PF02901 Pyruvate formate lyase-like 23 614 1.1E-204 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 PIRSF PIRSF000379 8 760 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 Gene3D G3DSA:3.20.70.20 2 760 0.0 T 11-10-2018 BED32_13700 639cd8c98a46c825bcb3796682c3b296 760 SUPERFAMILY SSF51998 4 758 1.1E-288 T 11-10-2018 BED32_10915 73dcbda2dc9d6bf9aedef1bf9cf6d10b 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 2.4E-26 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BED32_10915 73dcbda2dc9d6bf9aedef1bf9cf6d10b 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BED32_10915 73dcbda2dc9d6bf9aedef1bf9cf6d10b 135 Gene3D G3DSA:3.10.180.10 1 131 3.9E-49 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_10915 73dcbda2dc9d6bf9aedef1bf9cf6d10b 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 4.5E-67 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 BED32_10915 73dcbda2dc9d6bf9aedef1bf9cf6d10b 135 SUPERFAMILY SSF54593 1 128 2.42E-35 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 SUPERFAMILY SSF89360 1 97 4.71E-21 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 1 191 45.815 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 Gene3D G3DSA:3.30.300.130 106 191 1.3E-20 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 98 2.3E-13 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 SUPERFAMILY SSF117916 95 184 1.11E-23 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 119 177 3.0E-27 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 Pfam PF01106 NifU-like domain 111 177 5.5E-20 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 Gene3D G3DSA:2.60.300.12 1 98 8.1E-13 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_01480 85d3147b9a9d2a8eb363ce6bf49ffe7a 191 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 2 191 5.9E-101 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 SUPERFAMILY SSF82866 399 595 9.94E-42 T 11-10-2018 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Gene3D G3DSA:3.30.70.3400 211 426 1.0E-49 T 11-10-2018 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Gene3D G3DSA:3.30.1360.200 267 420 1.0E-49 T 11-10-2018 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Pfam PF02355 Protein export membrane protein 422 590 4.0E-16 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 334 583 7.7E-84 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Pfam PF13721 SecD export protein N-terminal TM region 1 92 8.5E-28 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 112 590 6.9E-151 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 604 47.998 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 BED32_05930 070a9ada4bfab7f2af5dba001044e67b 604 Pfam PF07549 SecD/SecF GG Motif 109 129 5.0E-6 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site BED32_14625 ad1e6ac5ab865631b838328416595f55 197 SMART SM00471 24 149 6.0E-7 T 11-10-2018 IPR003607 HD/PDEase domain BED32_14625 ad1e6ac5ab865631b838328416595f55 197 SUPERFAMILY SSF109604 2 191 2.15E-44 T 11-10-2018 BED32_14625 ad1e6ac5ab865631b838328416595f55 197 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 78 174 2.0E-48 T 11-10-2018 BED32_14625 ad1e6ac5ab865631b838328416595f55 197 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 1 193 45.564 T 11-10-2018 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 BED32_14625 ad1e6ac5ab865631b838328416595f55 197 Gene3D G3DSA:1.10.3210.10 1 196 1.7E-85 T 11-10-2018 BED32_14625 ad1e6ac5ab865631b838328416595f55 197 Pfam PF13023 HD domain 9 161 2.9E-17 T 11-10-2018 IPR006674 HD domain BED32_21120 ba39a4036b7a665d91f378df2f513cce 657 Pfam PF04326 Putative DNA-binding domain 9 138 5.7E-10 T 11-10-2018 IPR007421 Schlafen, AAA domain GO:0005524 BED32_21120 ba39a4036b7a665d91f378df2f513cce 657 Gene3D G3DSA:3.30.950.30 1 146 1.3E-27 T 11-10-2018 IPR038461 Schlafen, AAA domain superfamily BED32_21120 ba39a4036b7a665d91f378df2f513cce 657 Gene3D G3DSA:3.30.565.60 274 403 1.7E-12 T 11-10-2018 IPR038475 RecG, C-terminal domain superfamily BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 PRINTS PR01369 Intimin signature 337 349 8.3E-11 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 PRINTS PR01369 Intimin signature 250 269 8.3E-11 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 PRINTS PR01369 Intimin signature 182 201 8.3E-11 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 PRINTS PR01369 Intimin signature 154 169 8.3E-11 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SUPERFAMILY SSF49373 411 526 3.4E-11 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SUPERFAMILY SSF49373 627 719 3.92E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SUPERFAMILY SSF49373 749 828 1.35E-21 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Gene3D G3DSA:2.60.40.10 632 734 9.8E-10 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Gene3D G3DSA:2.60.40.10 532 629 1.1E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Gene3D G3DSA:2.60.40.1080 743 829 6.1E-20 T 11-10-2018 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SUPERFAMILY SSF49373 540 630 3.53E-18 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Gene3D G3DSA:2.40.160.160 65 309 5.8E-100 T 11-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Pfam PF11924 Inverse autotransporter, beta-domain 27 302 2.1E-97 T 11-10-2018 IPR024519 Inverse autotransporter, beta-domain BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Gene3D G3DSA:2.60.40.10 409 530 5.1E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Pfam PF09134 Invasin, domain 3 412 530 1.5E-15 T 11-10-2018 IPR015217 Invasin, domain 3 BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SMART SM00634 632 727 0.012 T 11-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 SMART SM00634 540 625 3.2E-11 T 11-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain BED32_18050 f97f60331c2e890de8acb4e66efc9133 924 Pfam PF02369 Bacterial Ig-like domain (group 1) 541 625 9.6E-13 T 11-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Gene3D G3DSA:1.10.287.950 292 595 7.5E-84 T 11-10-2018 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 SMART SM00304 292 346 1.0E-9 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 SMART SM00283 347 594 1.0E-85 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 522 551 1.7E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 474 503 1.7E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 472 1.7E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 271 291 1.7E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 368 397 1.7E-52 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 SUPERFAMILY SSF58104 314 595 3.14E-70 T 11-10-2018 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 561 2.2E-50 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Gene3D G3DSA:3.30.450.20 64 168 8.1E-49 T 11-10-2018 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 SUPERFAMILY SSF103190 109 177 6.28E-14 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Pfam PF00672 HAMP domain 293 342 4.7E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Gene3D G3DSA:3.30.450.20 55 264 8.1E-49 T 11-10-2018 BED32_14340 522397ea896d6b0df7687101a8a70d3f 595 Pfam PF02743 Cache domain 33 254 9.6E-30 T 11-10-2018 IPR033479 Double Cache domain 1 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 83 242 1.4E-73 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 SMART SM00971 9 113 4.5E-60 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 6.2E-10 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 Gene3D G3DSA:2.160.10.10 143 273 2.0E-38 T 11-10-2018 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 1.5E-37 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 SUPERFAMILY SSF51161 9 260 4.02E-66 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 Gene3D G3DSA:1.10.3130.10 1 142 4.5E-52 T 11-10-2018 BED32_20895 3aa46f593f47fa3196d6ac795b4187bc 273 PIRSF PIRSF000441 75 265 4.7E-59 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 804 109.926 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 487 503 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 736 752 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 113 127 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 505 522 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 525 537 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 70 83 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 268 281 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 35 50 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR00418 DNA topoisomerase II family signature 420 434 1.4E-70 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 804 0.0 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Gene3D G3DSA:3.40.50.670 706 802 2.3E-25 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 SUPERFAMILY SSF55874 4 220 1.24E-77 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Pfam PF01751 Toprim domain 419 531 5.2E-18 T 11-10-2018 IPR006171 TOPRIM domain BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 SUPERFAMILY SSF54211 221 392 3.98E-62 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 SMART SM00433 35 797 1.4E-280 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 793 3.0E-29 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 181 196 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 196 209 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 374 394 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 360 374 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 470 479 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 312 328 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 757 769 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 220 242 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 773 789 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 PRINTS PR01159 DNA gyrase subunit B signature 5 15 4.6E-79 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Gene3D G3DSA:3.30.565.10 1 220 2.6E-97 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Gene3D G3DSA:3.10.20.690 592 683 5.2E-38 T 11-10-2018 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 6.9E-22 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Pfam PF00204 DNA gyrase B 221 390 2.1E-59 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Gene3D G3DSA:3.40.50.670 398 571 2.6E-74 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 Gene3D G3DSA:3.30.230.10 221 392 4.8E-75 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 SMART SM00387 31 175 3.3E-31 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_00475 a3950b1d95af7bea66209aa4e830f5df 804 SUPERFAMILY SSF56719 394 795 2.59E-86 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 Gene3D G3DSA:3.90.1150.10 253 379 1.4E-37 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 Hamap MF_01167 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase [arnB]. 1 379 71.291 T 11-10-2018 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB GO:0008483 KEGG: 00520+2.6.1.87 BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 12 373 5.1E-128 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 Gene3D G3DSA:3.40.640.10 1 252 9.1E-94 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 SUPERFAMILY SSF53383 4 376 1.21E-112 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_10700 ca29ae1f5233a7d8a5d8c63c274cdc69 382 PIRSF PIRSF000390 1 380 3.2E-110 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 SUPERFAMILY SSF53335 42 290 1.41E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 Gene3D G3DSA:3.40.50.150 101 293 1.4E-56 T 11-10-2018 BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 292 2.8E-101 T 11-10-2018 BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 32.424 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 PIRSF PIRSF000401 1 293 1.6E-90 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BED32_02415 64804f5edac469f7ff763d4e1b55f86e 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 3.8E-117 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 445 528 1.8E-20 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 6 97 3.1E-17 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 255 371 8.24E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 98 181 4.6E-7 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 358 444 1.6E-22 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 269 357 1.2E-29 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 1 112 4.91E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 189 275 7.46E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 2.3E-236 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PIRSF PIRSF002111 1 534 2.5E-217 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 363 444 4.77E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 275 347 6.5E-26 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 19 87 5.0E-5 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 362 434 1.8E-20 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 103 171 8.1E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 449 520 2.0E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SMART SM00316 190 260 2.8E-28 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 20 78 6.7E-7 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 279 347 2.8E-19 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 190 260 2.4E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 449 520 4.3E-16 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 103 171 6.9E-10 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 Pfam PF00575 S1 RNA binding domain 361 434 3.3E-21 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 104 185 4.25E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 SUPERFAMILY SSF50249 429 535 4.62E-22 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13660 4570ae43d49be061c1037362266f69ae 557 Gene3D G3DSA:2.40.50.140 187 268 1.1E-27 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 155 175 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 330 348 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 84 103 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 126 143 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 21 39 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 212 233 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 290 309 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 39 53 6.7E-99 T 11-10-2018 BED32_13660 4570ae43d49be061c1037362266f69ae 557 PRINTS PR00681 Ribosomal protein S1 signature 108 124 6.7E-99 T 11-10-2018 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 SMART SM00354 5 75 3.6E-31 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 Gene3D G3DSA:1.10.260.40 4 64 9.7E-25 T 11-10-2018 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 2.1E-20 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 SUPERFAMILY SSF53822 65 336 6.23E-61 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 SUPERFAMILY SSF47413 5 63 1.49E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 7 17 1.1E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 17 27 1.1E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 Gene3D G3DSA:3.40.50.2300 80 324 9.5E-74 T 11-10-2018 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 11-10-2018 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 Pfam PF13377 Periplasmic binding protein-like domain 174 333 3.6E-38 T 11-10-2018 BED32_09460 e49e595fd91d4d7d2ae878c8f97f60af 344 Gene3D G3DSA:3.40.50.2300 164 328 9.5E-74 T 11-10-2018 BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 SUPERFAMILY SSF53850 92 290 1.01E-26 T 11-10-2018 BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 Gene3D G3DSA:3.40.190.10 99 283 2.1E-8 T 11-10-2018 BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 Gene3D G3DSA:1.10.10.10 5 95 2.2E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 Gene3D G3DSA:3.40.190.10 171 268 2.1E-8 T 11-10-2018 BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 SUPERFAMILY SSF46785 1 87 8.17E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_18165 65cdd5f64d0480d54e7b6eafba72576a 299 Pfam PF03466 LysR substrate binding domain 98 288 1.2E-12 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_16405 c196e6f02e8af0afbae79c849e8eebff 446 TIGRFAM TIGR00359 cello_pts_IIC: PTS system, cellobiose-specific IIC component 5 433 1.5E-154 T 11-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BED32_16405 c196e6f02e8af0afbae79c849e8eebff 446 PIRSF PIRSF006351 1 440 1.1E-124 T 11-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BED32_16405 c196e6f02e8af0afbae79c849e8eebff 446 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 5 433 1.5E-154 T 11-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 BED32_16405 c196e6f02e8af0afbae79c849e8eebff 446 Pfam PF02378 Phosphotransferase system, EIIC 23 356 2.0E-43 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_12635 f54389f0005c84a7a0564870c5d256bb 220 Gene3D G3DSA:3.30.420.10 3 174 1.4E-43 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_12635 f54389f0005c84a7a0564870c5d256bb 220 SUPERFAMILY SSF53098 1 196 1.93E-31 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_12635 f54389f0005c84a7a0564870c5d256bb 220 Pfam PF00929 Exonuclease 5 148 3.6E-11 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_12635 f54389f0005c84a7a0564870c5d256bb 220 SMART SM00479 2 157 4.3E-30 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_00510 0484dcdb424d6c7fcc02aed8f4bf4b02 157 Gene3D G3DSA:2.60.40.790 32 135 9.3E-22 T 11-10-2018 IPR008978 HSP20-like chaperone BED32_00510 0484dcdb424d6c7fcc02aed8f4bf4b02 157 SUPERFAMILY SSF49764 30 134 9.42E-20 T 11-10-2018 IPR008978 HSP20-like chaperone BED32_00510 0484dcdb424d6c7fcc02aed8f4bf4b02 157 Pfam PF00011 Hsp20/alpha crystallin family 39 134 8.4E-17 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BED32_00510 0484dcdb424d6c7fcc02aed8f4bf4b02 157 Hamap MF_02001 Small heat shock protein IbpB [ibpB]. 1 147 47.428 T 11-10-2018 IPR022848 Small heat shock protein IbpB BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 SUPERFAMILY SSF51556 63 328 9.48E-73 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 Gene3D G3DSA:2.30.40.10 6 373 2.9E-119 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 Pfam PF01979 Amidohydrolase family 60 359 2.5E-12 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 SUPERFAMILY SSF51338 1 376 1.46E-17 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 PIRSF PIRSF039004 1 387 5.1E-132 T 11-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 TIGRFAM TIGR03583 EF_0837: putative amidohydrolase, EF_0837/AHA_3915 family 2 376 4.1E-165 T 11-10-2018 IPR020043 Deacetylase Atu3266-like GO:0019213 BED32_02815 624114854e12b2f00610cdac22c6ae9c 389 Gene3D G3DSA:3.20.20.140 63 328 2.9E-119 T 11-10-2018 BED32_02220 77e6de98412f5f375b7da1784ce7c3a2 288 Pfam PF01040 UbiA prenyltransferase family 28 270 3.1E-66 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BED32_02220 77e6de98412f5f375b7da1784ce7c3a2 288 Gene3D G3DSA:1.10.357.140 23 183 6.4E-40 T 11-10-2018 BED32_02220 77e6de98412f5f375b7da1784ce7c3a2 288 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 10 287 1.6E-109 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 BED32_02220 77e6de98412f5f375b7da1784ce7c3a2 288 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 5 288 30.339 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 BED32_02220 77e6de98412f5f375b7da1784ce7c3a2 288 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 67 89 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site BED32_09980 56f3bf47158a5837c267beab0b4b4537 447 Gene3D G3DSA:3.75.10.20 1 447 7.2E-208 T 11-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 BED32_09980 56f3bf47158a5837c267beab0b4b4537 447 SUPERFAMILY SSF55909 4 445 2.55E-202 T 11-10-2018 BED32_09980 56f3bf47158a5837c267beab0b4b4537 447 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 59.06 T 11-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 BED32_09980 56f3bf47158a5837c267beab0b4b4537 447 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 1.8E-246 T 11-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 BED32_09980 56f3bf47158a5837c267beab0b4b4537 447 Pfam PF04996 Succinylarginine dihydrolase 4 445 1.7E-217 T 11-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 900 958 1.2E-16 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 PRINTS PR00986 Valyl-tRNA synthetase signature 514 532 2.1E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 PRINTS PR00986 Valyl-tRNA synthetase signature 483 504 2.1E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 PRINTS PR00986 Valyl-tRNA synthetase signature 383 396 2.1E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 PRINTS PR00986 Valyl-tRNA synthetase signature 250 267 2.1E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 PRINTS PR00986 Valyl-tRNA synthetase signature 49 60 2.1E-35 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Gene3D G3DSA:3.40.50.620 382 567 5.0E-42 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_18655 5ea7469876ce18586fc7908180eeae95 965 SUPERFAMILY SSF52374 14 655 1.59E-136 T 11-10-2018 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Gene3D G3DSA:1.10.287.380 891 963 5.7E-19 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 SUPERFAMILY SSF47323 656 913 1.81E-73 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Gene3D G3DSA:3.40.50.620 16 210 3.4E-64 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Hamap MF_02004 Valine--tRNA ligase [valS]. 15 963 16.207 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 TIGRFAM TIGR00422 valS: valine--tRNA ligase 16 944 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 56 67 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Pfam PF08264 Anticodon-binding domain of tRNA 688 839 1.4E-44 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Gene3D G3DSA:3.90.740.10 211 374 8.6E-49 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 SUPERFAMILY SSF46589 898 962 4.81E-16 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Gene3D G3DSA:1.10.730.10 592 831 4.4E-73 T 11-10-2018 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 SUPERFAMILY SSF50677 205 379 1.44E-56 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_18655 5ea7469876ce18586fc7908180eeae95 965 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 645 1.1E-230 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 Gene3D G3DSA:3.30.160.390 1 89 2.2E-33 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 SUPERFAMILY SSF56349 99 380 3.24E-60 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 Gene3D G3DSA:1.10.443.10 205 383 2.4E-18 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 Pfam PF00589 Phage integrase family 206 370 1.5E-23 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 Gene3D G3DSA:1.10.150.130 90 204 6.3E-33 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_20585 31400f1ae5c7c9f960070e2e0e47266b 404 Pfam PF13356 Arm DNA-binding domain 3 88 5.4E-19 T 11-10-2018 IPR025166 Integrase, DNA-binding domain BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SMART SM00896 701 794 1.1E-44 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SUPERFAMILY SSF54991 696 794 5.23E-30 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:3.30.56.10 7 180 1.1E-74 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 2.2E-290 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SUPERFAMILY SSF55681 467 690 4.97E-55 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:2.40.50.140 39 154 1.1E-74 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SMART SM00873 212 385 1.8E-97 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SUPERFAMILY SSF46955 403 475 8.33E-21 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 2.2E-28 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:3.50.40.10 197 395 2.7E-82 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SUPERFAMILY SSF50249 35 196 2.69E-51 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Pfam PF01588 Putative tRNA binding domain 45 145 1.8E-26 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:3.30.930.10 485 693 3.0E-63 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SMART SM00874 403 471 2.7E-31 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 SUPERFAMILY SSF56037 199 396 6.54E-77 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 5.5E-21 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 48.353 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:3.30.56.10 401 475 1.1E-28 T 11-10-2018 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Gene3D G3DSA:3.30.70.380 702 795 1.0E-31 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 BED32_10665 400fd29fe2435625d1635c93de22b5a2 795 Pfam PF03483 B3/4 domain 212 385 8.1E-71 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 BED32_03980 cf16e149d81a3ba481199956709afb27 231 Pfam PF04539 Sigma-70 region 3 101 141 2.6E-8 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BED32_03980 cf16e149d81a3ba481199956709afb27 231 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 229 5.4E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_03980 cf16e149d81a3ba481199956709afb27 231 SUPERFAMILY SSF88659 158 230 4.67E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_03980 cf16e149d81a3ba481199956709afb27 231 SUPERFAMILY SSF88659 93 154 6.1E-13 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_03980 cf16e149d81a3ba481199956709afb27 231 Gene3D G3DSA:1.10.1740.10 7 88 4.3E-17 T 11-10-2018 BED32_03980 cf16e149d81a3ba481199956709afb27 231 Pfam PF04545 Sigma-70, region 4 180 228 3.3E-11 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BED32_03980 cf16e149d81a3ba481199956709afb27 231 Gene3D G3DSA:1.20.140.160 90 231 3.6E-32 T 11-10-2018 BED32_03980 cf16e149d81a3ba481199956709afb27 231 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 21 229 7.6E-64 T 11-10-2018 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 BED32_03980 cf16e149d81a3ba481199956709afb27 231 SUPERFAMILY SSF88946 19 91 1.96E-17 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_03980 cf16e149d81a3ba481199956709afb27 231 Pfam PF04542 Sigma-70 region 2 21 92 4.1E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 Gene3D G3DSA:1.10.150.240 16 95 2.6E-61 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 194 3.6E-20 T 11-10-2018 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 Gene3D G3DSA:3.40.50.1000 5 218 2.6E-61 T 11-10-2018 IPR023214 HAD superfamily BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 221 1.4E-74 T 11-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 97 189 4.0E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 SUPERFAMILY SSF56784 2 222 8.55E-48 T 11-10-2018 IPR036412 HAD-like superfamily BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 8.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 8.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 8.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_11330 46030d67055c1a6ba4a91023e0000d62 224 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 184 197 8.2E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_11740 169ebd4e188f993b00c7fa0084ec336b 284 Pfam PF01695 IstB-like ATP binding protein 106 260 6.2E-20 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 BED32_11740 169ebd4e188f993b00c7fa0084ec336b 284 SUPERFAMILY SSF52540 103 265 4.43E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11740 169ebd4e188f993b00c7fa0084ec336b 284 SMART SM00382 139 268 0.001 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11740 169ebd4e188f993b00c7fa0084ec336b 284 Gene3D G3DSA:3.40.50.300 86 267 1.4E-41 T 11-10-2018 BED32_15715 57f1ead32e65e052a55b3ee12a73dfd5 730 SUPERFAMILY SSF161098 512 713 6.54E-21 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15715 57f1ead32e65e052a55b3ee12a73dfd5 730 SUPERFAMILY SSF161098 418 497 1.96E-6 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15715 57f1ead32e65e052a55b3ee12a73dfd5 730 SUPERFAMILY SSF82171 168 375 1.26E-9 T 11-10-2018 BED32_15715 57f1ead32e65e052a55b3ee12a73dfd5 730 Gene3D G3DSA:1.10.3720.10 512 723 2.8E-20 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15715 57f1ead32e65e052a55b3ee12a73dfd5 730 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 448 717 6.3E-11 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_20440 127badcd4e77876859bfd8cedcbf23eb 418 Hamap MF_02024 Lipid III flippase [wzxE]. 1 416 39.757 T 11-10-2018 IPR032896 Lipid III flippase WzxE GO:0005886|GO:0009246 BED32_20440 127badcd4e77876859bfd8cedcbf23eb 418 Pfam PF01943 Polysaccharide biosynthesis protein 4 283 1.3E-13 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 BED32_16410 2e9493eb28d2ea8e711c814b6ff53dee 105 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 1.2E-16 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BED32_16410 2e9493eb28d2ea8e711c814b6ff53dee 105 Gene3D G3DSA:3.40.50.2300 1 105 4.9E-33 T 11-10-2018 BED32_16410 2e9493eb28d2ea8e711c814b6ff53dee 105 SUPERFAMILY SSF52794 4 103 1.86E-31 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_18035 b4a37e4993de55b02673eeba95b12e7e 256 Pfam PF09335 SNARE associated Golgi protein 36 159 3.4E-20 T 11-10-2018 IPR032816 SNARE associated Golgi protein BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 Pfam PF01266 FAD dependent oxidoreductase 4 350 3.5E-47 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 SUPERFAMILY SSF54373 213 313 7.06E-20 T 11-10-2018 BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 SUPERFAMILY SSF51905 2 371 8.29E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 Gene3D G3DSA:3.50.50.60 4 367 8.3E-131 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 Hamap MF_00515 N-methyl-L-tryptophan oxidase [solA]. 1 371 76.126 T 11-10-2018 IPR023493 N-methyl-L-tryptophan oxidase MTOX GO:0050131|GO:0050660|GO:0055114 BED32_13235 3942b07226ee941b53e75fc67aa5ca3b 373 Gene3D G3DSA:3.30.9.10 59 313 8.3E-131 T 11-10-2018 BED32_11090 3122a1486e6329817d45dd13763b29a2 134 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 22 134 1.1E-39 T 11-10-2018 IPR014320 Phage shock protein, PspC BED32_11090 3122a1486e6329817d45dd13763b29a2 134 Pfam PF04024 PspC domain 23 80 1.6E-16 T 11-10-2018 IPR007168 Phage shock protein, PspC, N-terminal BED32_19250 69895a3ad4178f985da3ab08768a5783 384 SUPERFAMILY SSF46548 144 261 5.75E-20 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_19250 69895a3ad4178f985da3ab08768a5783 384 Pfam PF08331 Domain of unknown function (DUF1730) 62 145 4.6E-21 T 11-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 BED32_19250 69895a3ad4178f985da3ab08768a5783 384 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 7 320 51.073 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BED32_19250 69895a3ad4178f985da3ab08768a5783 384 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 198 209 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_19250 69895a3ad4178f985da3ab08768a5783 384 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 14 353 1.2E-148 T 11-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 BED32_19250 69895a3ad4178f985da3ab08768a5783 384 Pfam PF13484 4Fe-4S double cluster binding domain 197 261 4.8E-19 T 11-10-2018 BED32_21445 f9cf2de4829ed29fbe3734936695e12f 141 SUPERFAMILY SSF81573 48 106 3.66E-15 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily BED32_21445 f9cf2de4829ed29fbe3734936695e12f 141 Pfam PF00430 ATP synthase B/B' CF(0) 2 122 1.7E-34 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BED32_21445 f9cf2de4829ed29fbe3734936695e12f 141 Hamap MF_01398 ATP synthase subunit b [atpF]. 5 123 10.172 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 BED32_21445 f9cf2de4829ed29fbe3734936695e12f 141 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 1 141 2.0E-56 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 BED32_21445 f9cf2de4829ed29fbe3734936695e12f 141 Gene3D G3DSA:1.20.5.620 47 107 1.3E-24 T 11-10-2018 BED32_11150 e70061e8f3f74a131264f368e3d10cd3 313 Gene3D G3DSA:3.40.50.620 2 272 4.1E-46 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_11150 e70061e8f3f74a131264f368e3d10cd3 313 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 10 271 57.163 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 BED32_11150 e70061e8f3f74a131264f368e3d10cd3 313 SUPERFAMILY SSF52402 17 236 6.84E-54 T 11-10-2018 BED32_11150 e70061e8f3f74a131264f368e3d10cd3 313 Pfam PF01171 PP-loop family 42 203 1.4E-12 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 BED32_11150 e70061e8f3f74a131264f368e3d10cd3 313 PIRSF PIRSF004976 2 273 1.4E-75 T 11-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 5 412 1.0E-95 T 11-10-2018 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 Gene3D G3DSA:3.40.50.1820 23 680 6.5E-249 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 SUPERFAMILY SSF53474 422 663 2.25E-47 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 614 636 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 596 611 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 508 527 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 480 504 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 454 472 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 538 558 5.7E-55 T 11-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 Gene3D G3DSA:2.130.10.120 74 413 6.5E-249 T 11-10-2018 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 SUPERFAMILY SSF50993 2 414 2.22E-84 T 11-10-2018 BED32_12640 b68d3bd8266d77ecb4880a0751aaebea 684 Pfam PF00326 Prolyl oligopeptidase family 469 682 2.1E-70 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BED32_11925 76fe371a68f73cde44dc4c01b6f2c115 196 SUPERFAMILY SSF142695 3 173 8.5E-66 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BED32_11925 76fe371a68f73cde44dc4c01b6f2c115 196 Gene3D G3DSA:3.40.50.10990 1 174 9.5E-76 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BED32_11925 76fe371a68f73cde44dc4c01b6f2c115 196 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 48.059 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BED32_11925 76fe371a68f73cde44dc4c01b6f2c115 196 Pfam PF00925 GTP cyclohydrolase II 5 170 2.0E-66 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BED32_11925 76fe371a68f73cde44dc4c01b6f2c115 196 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 5 194 1.3E-91 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 BED32_00260 79e7a36b3e6eabf461919137b6f9715c 80 Gene3D G3DSA:1.10.8.1250 10 79 2.5E-15 T 11-10-2018 IPR038296 Antitoxin ParD superfamily BED32_00260 79e7a36b3e6eabf461919137b6f9715c 80 TIGRFAM TIGR02606 antidote_CC2985: putative addiction module antidote protein, CC2985 family 5 72 4.1E-26 T 11-10-2018 IPR022789 Antitoxin ParD BED32_00260 79e7a36b3e6eabf461919137b6f9715c 80 Pfam PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH 1 60 4.3E-18 T 11-10-2018 IPR022789 Antitoxin ParD BED32_00260 79e7a36b3e6eabf461919137b6f9715c 80 SUPERFAMILY SSF47598 4 47 1.22E-10 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 195 4.9E-20 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 TIGRFAM TIGR00379 cobB: cobyrinic acid a,c-diamide synthase 10 449 1.2E-126 T 11-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 Gene3D G3DSA:3.40.50.880 268 419 2.8E-7 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 Gene3D G3DSA:3.40.50.300 7 193 3.0E-29 T 11-10-2018 BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 Hamap MF_00027 Hydrogenobyrinate a,c-diamide synthase [cobB]. 6 453 41.311 T 11-10-2018 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 262 436 1.9E-35 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 SUPERFAMILY SSF52540 8 202 1.9E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08950 b5f34e4370496630b65a53f6f0ed676f 465 SUPERFAMILY SSF52317 268 416 5.26E-26 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_09595 634c8c0a80396322ddc34c2616600cac 138 SUPERFAMILY SSF140566 1 112 4.18E-17 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 BED32_09595 634c8c0a80396322ddc34c2616600cac 138 Pfam PF05130 FlgN protein 3 127 3.8E-23 T 11-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 BED32_09595 634c8c0a80396322ddc34c2616600cac 138 Gene3D G3DSA:1.20.58.300 1 112 1.6E-11 T 11-10-2018 BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 SUPERFAMILY SSF52402 6 209 4.19E-75 T 11-10-2018 BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 PIRSF PIRSF002936 1 302 3.4E-155 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 1.8E-64 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 Gene3D G3DSA:3.40.50.620 7 212 8.1E-65 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 2.1E-166 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BED32_04590 0bd0c2965cfa55c3f1aa6f06d399e4d2 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 58.717 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 Gene3D G3DSA:3.30.300.70 1 79 3.1E-24 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 150 23.824 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 Pfam PF17384 RimP C-terminal SH3 domain 85 150 1.6E-22 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 SUPERFAMILY SSF74942 83 150 1.22E-16 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 SUPERFAMILY SSF75420 3 82 1.14E-23 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily BED32_18935 7d4f8498f766c9dc78ed02e4ba55b261 150 Pfam PF02576 RimP N-terminal domain 11 82 1.3E-27 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 SUPERFAMILY SSF54768 9 75 3.87E-23 T 11-10-2018 BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 1.8E-28 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 Gene3D G3DSA:3.30.160.20 1 73 2.3E-33 T 11-10-2018 BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 SUPERFAMILY SSF54211 79 159 5.06E-27 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 2.4E-70 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 Gene3D G3DSA:3.30.230.10 74 167 1.8E-38 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 4.3E-30 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site BED32_01960 56a7de53caec126398e32f9a63c8b19e 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.59 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:3.40.1110.10 616 734 1.9E-92 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Pfam PF00702 haloacid dehalogenase-like hydrolase 602 816 3.9E-49 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 607 613 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:2.70.150.20 396 508 1.2E-32 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 375 880 1.1E-84 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 802 818 8.3E-8 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 774 790 8.3E-8 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 833 858 8.3E-8 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF81653 406 503 3.66E-24 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:3.40.50.1000 586 854 1.9E-92 T 11-10-2018 IPR023214 HAD superfamily BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF55008 1 67 5.76E-12 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 336 911 2.5E-179 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF81665 370 869 1.57E-10 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 ProSitePatterns PS01229 Hypothetical cof family signature 2. 802 824 - T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF56784 603 908 1.19E-60 T 11-10-2018 IPR036412 HAD-like superfamily BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 317 911 7.2E-186 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 727 738 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 802 821 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 825 837 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 605 619 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 749 759 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 453 467 6.8E-25 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF55008 71 133 9.56E-13 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Pfam PF00122 E1-E2 ATPase 404 584 1.5E-49 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 ProSitePatterns PS01047 Heavy-metal-associated domain. 189 218 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:3.30.70.100 71 131 4.9E-14 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:3.30.70.100 185 248 9.1E-19 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Gene3D G3DSA:3.30.70.100 6 64 1.4E-11 T 11-10-2018 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 SUPERFAMILY SSF55008 184 250 1.7E-17 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Pfam PF00403 Heavy-metal-associated domain 7 62 3.3E-8 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Pfam PF00403 Heavy-metal-associated domain 73 128 2.8E-8 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BED32_06400 6068885d9f31c81c9bb4979144db0c5b 918 Pfam PF00403 Heavy-metal-associated domain 191 243 1.7E-12 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 10 127 2.0E-49 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 10 320 4.7E-127 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 SUPERFAMILY SSF53271 75 312 5.35E-67 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 SMART SM01400 10 127 5.7E-76 T 11-10-2018 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 135 150 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 Gene3D G3DSA:3.40.50.2020 154 296 8.5E-137 T 11-10-2018 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 Pfam PF14572 Phosphoribosyl synthetase-associated domain 210 319 1.1E-30 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 10 320 49.803 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 BED32_09795 9b61eb071940ea4ee1a8d9c23c27f1b1 321 Gene3D G3DSA:3.40.50.2020 13 308 8.5E-137 T 11-10-2018 BED32_20995 183ada4498d340bd390c602cce3ab8ad 78 Pfam PF00830 Ribosomal L28 family 3 62 1.8E-25 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_20995 183ada4498d340bd390c602cce3ab8ad 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.265 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_20995 183ada4498d340bd390c602cce3ab8ad 78 Gene3D G3DSA:2.30.170.40 2 78 6.4E-33 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_20995 183ada4498d340bd390c602cce3ab8ad 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 9.0E-29 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_20995 183ada4498d340bd390c602cce3ab8ad 78 SUPERFAMILY SSF143800 1 77 6.47E-30 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_12870 ba554f9aaba200764277eacd97f82c62 84 Gene3D G3DSA:3.40.630.10 1 84 1.7E-7 T 11-10-2018 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 Gene3D G3DSA:3.40.140.10 184 298 4.9E-26 T 11-10-2018 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 31 289 3.0E-84 T 11-10-2018 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 Hamap MF_01558 Cytidine deaminase [cdd]. 1 297 48.324 T 11-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 Gene3D G3DSA:3.40.140.10 29 179 5.0E-42 T 11-10-2018 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 282 9.8E-42 T 11-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 SUPERFAMILY SSF53927 1 147 4.18E-40 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 SUPERFAMILY SSF53927 154 296 2.69E-37 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 64 140 1.0E-11 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain BED32_08550 932bf121934da7c426f5745c6cd74fe9 298 PIRSF PIRSF006334 14 298 2.2E-105 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:1.10.4050.10 1 109 6.3E-30 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:3.30.460.100 562 811 7.9E-97 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 553 805 3.4E-97 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 34 276 4.6E-96 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 SUPERFAMILY SSF81301 525 815 2.94E-88 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:3.30.460.10 111 284 9.5E-68 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 SUPERFAMILY SSF81593 287 436 1.57E-43 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 SUPERFAMILY SSF81301 17 286 1.06E-91 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 27 945 19.69 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:1.20.120.330 285 440 4.9E-57 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:1.20.120.330 812 946 8.0E-48 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Gene3D G3DSA:1.20.120.1510 450 561 1.1E-29 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 SUPERFAMILY SSF81593 818 943 2.75E-33 T 11-10-2018 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Pfam PF08335 GlnD PII-uridylyltransferase 825 920 1.8E-10 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BED32_03450 bd9358b5a1506db7f84c09ba543ab529 950 Pfam PF08335 GlnD PII-uridylyltransferase 297 436 2.6E-47 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 PIRSF PIRSF005902 1 259 2.3E-73 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 126 136 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 Gene3D G3DSA:3.20.20.140 1 264 1.2E-98 T 11-10-2018 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 Pfam PF01026 TatD related DNase 4 255 1.0E-75 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 SUPERFAMILY SSF51556 1 257 1.51E-85 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 256 5.2E-92 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 BED32_13135 0a2f00c5bc6ab150560ec82f108e1a3a 269 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_14950 860cb4aeec3c46ce65354e679c76adb0 258 PRINTS PR01805 VacJ lipoprotein signature 105 122 9.3E-33 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BED32_14950 860cb4aeec3c46ce65354e679c76adb0 258 PRINTS PR01805 VacJ lipoprotein signature 36 49 9.3E-33 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BED32_14950 860cb4aeec3c46ce65354e679c76adb0 258 PRINTS PR01805 VacJ lipoprotein signature 54 70 9.3E-33 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BED32_14950 860cb4aeec3c46ce65354e679c76adb0 258 PRINTS PR01805 VacJ lipoprotein signature 144 161 9.3E-33 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BED32_14950 860cb4aeec3c46ce65354e679c76adb0 258 Pfam PF04333 MlaA lipoprotein 35 228 1.2E-65 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 BED32_06330 680de266d75dd97c33d9c9c3355e6052 292 Gene3D G3DSA:3.90.550.10 1 241 1.6E-34 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_06330 680de266d75dd97c33d9c9c3355e6052 292 Pfam PF00535 Glycosyl transferase family 2 5 105 1.3E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_06330 680de266d75dd97c33d9c9c3355e6052 292 SUPERFAMILY SSF53448 4 221 1.55E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 SUPERFAMILY SSF46785 1 70 6.61E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 Gene3D G3DSA:3.90.1150.10 96 464 3.0E-101 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 4.4E-14 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 SUPERFAMILY SSF53383 60 465 1.9E-92 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 Gene3D G3DSA:3.40.640.10 141 359 3.0E-101 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 SMART SM00345 7 66 5.9E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 Pfam PF00155 Aminotransferase class I and II 146 456 1.1E-30 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_09960 06f60a82a32482f5ae926dfc1ce431de 477 Gene3D G3DSA:1.10.10.10 1 94 4.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06600 3bca5cfe436ebf1db96f69e9d5e3279b 284 SUPERFAMILY SSF52540 103 265 4.43E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06600 3bca5cfe436ebf1db96f69e9d5e3279b 284 Pfam PF01695 IstB-like ATP binding protein 106 260 6.3E-20 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 BED32_06600 3bca5cfe436ebf1db96f69e9d5e3279b 284 SMART SM00382 139 268 0.001 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06600 3bca5cfe436ebf1db96f69e9d5e3279b 284 Gene3D G3DSA:3.40.50.300 86 267 1.4E-41 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 SUPERFAMILY SSF55424 336 450 9.11E-36 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 1.7E-66 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 2.9E-219 T 11-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 SUPERFAMILY SSF51905 1 364 3.5E-60 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 4.8E-29 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 4.8E-29 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 4.8E-29 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 4.8E-29 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 4.8E-29 T 11-10-2018 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 1.9E-34 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 PIRSF PIRSF000350 1 447 5.0E-87 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 Gene3D G3DSA:3.50.50.60 144 261 3.4E-125 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 Gene3D G3DSA:3.50.50.60 5 318 3.4E-125 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 318 1.7E-69 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_01120 aece52eb9fe9dc3a2676b653cd344a45 450 Gene3D G3DSA:3.30.390.30 338 450 4.3E-48 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1031 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 SUPERFAMILY SSF89550 6 263 6.08E-18 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Pfam PF02811 PHP domain 8 171 7.4E-45 T 11-10-2018 IPR004013 PHP domain GO:0003824 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Gene3D G3DSA:1.10.10.1600 433 510 2.3E-34 T 11-10-2018 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Gene3D G3DSA:2.40.50.140 985 1074 2.3E-5 T 11-10-2018 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Pfam PF01336 OB-fold nucleic acid binding domain 1000 1071 1.9E-7 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Gene3D G3DSA:3.20.20.140 1 270 1.7E-95 T 11-10-2018 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 SMART SM00481 7 74 2.0E-28 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Pfam PF14579 Helix-hairpin-helix motif 808 897 5.8E-24 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_16815 794618d52df5764c4fd0574c06d5b5ec 1160 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 291 734 2.4E-176 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 Gene3D G3DSA:3.40.250.10 151 276 2.0E-38 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 ProSitePatterns PS00683 Rhodanese C-terminal signature. 260 270 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 SUPERFAMILY SSF52821 159 279 2.62E-32 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 Gene3D G3DSA:3.40.250.10 1 150 4.2E-47 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 SUPERFAMILY SSF52821 1 152 5.76E-44 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 ProSitePatterns PS00380 Rhodanese signature 1. 43 54 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 SMART SM00450 156 276 5.9E-18 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 SMART SM00450 7 133 1.1E-24 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 Pfam PF00581 Rhodanese-like domain 160 272 5.8E-11 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_08165 9d9681ebe6f10d93a080bdb6e81201f5 284 Pfam PF00581 Rhodanese-like domain 8 129 3.0E-18 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_08750 28742b45b14e79981455cf3834359395 299 Gene3D G3DSA:3.30.70.120 226 299 1.5E-34 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BED32_08750 28742b45b14e79981455cf3834359395 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 1.9E-47 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 SUPERFAMILY SSF54913 226 298 2.22E-21 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BED32_08750 28742b45b14e79981455cf3834359395 299 Pfam PF08029 HisG, C-terminal domain 223 296 6.6E-24 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.256 T 11-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 Gene3D G3DSA:3.40.190.10 7 221 6.9E-74 T 11-10-2018 BED32_08750 28742b45b14e79981455cf3834359395 299 SUPERFAMILY SSF53850 6 224 7.42E-70 T 11-10-2018 BED32_08750 28742b45b14e79981455cf3834359395 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 204 298 1.7E-32 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 8.4E-56 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 BED32_08750 28742b45b14e79981455cf3834359395 299 Gene3D G3DSA:3.40.190.10 103 192 6.9E-74 T 11-10-2018 BED32_08070 1a8517057e5391cd93a6498664292953 310 Gene3D G3DSA:1.20.225.30 243 310 1.7E-33 T 11-10-2018 BED32_08070 1a8517057e5391cd93a6498664292953 310 SUPERFAMILY SSF51395 1 301 6.41E-71 T 11-10-2018 BED32_08070 1a8517057e5391cd93a6498664292953 310 Pfam PF01207 Dihydrouridine synthase (Dus) 4 298 1.8E-89 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_08070 1a8517057e5391cd93a6498664292953 310 PIRSF PIRSF006621 1 310 1.9E-82 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_08070 1a8517057e5391cd93a6498664292953 310 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 51.823 T 11-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 BED32_08070 1a8517057e5391cd93a6498664292953 310 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_08070 1a8517057e5391cd93a6498664292953 310 Gene3D G3DSA:3.20.20.70 1 242 2.8E-86 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_06390 a37a46d445f64c0cc5bfde31a1af21a9 159 SUPERFAMILY SSF55826 2 155 1.57E-44 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BED32_06390 a37a46d445f64c0cc5bfde31a1af21a9 159 Gene3D G3DSA:3.90.960.10 1 159 1.1E-62 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BED32_06390 a37a46d445f64c0cc5bfde31a1af21a9 159 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 9.0E-55 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BED32_06390 a37a46d445f64c0cc5bfde31a1af21a9 159 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 5.8E-24 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BED32_06390 a37a46d445f64c0cc5bfde31a1af21a9 159 PIRSF PIRSF006181 1 159 2.2E-55 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Gene3D G3DSA:3.30.565.10 517 680 3.5E-19 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_14390 744f5fac93e80a8802e833971124d1c2 897 SMART SM00387 562 675 1.3E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Gene3D G3DSA:1.20.120.160 797 895 6.4E-10 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 SMART SM00388 450 515 8.6E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 SUPERFAMILY SSF47226 787 891 8.37E-19 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Gene3D G3DSA:3.40.50.11620 683 796 6.0E-42 T 11-10-2018 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily BED32_14390 744f5fac93e80a8802e833971124d1c2 897 SUPERFAMILY SSF55874 504 671 1.57E-17 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Pfam PF01627 Hpt domain 812 891 2.3E-9 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Hamap MF_00980 Phosphotransferase RcsD [rcsD]. 9 892 26.266 T 11-10-2018 IPR030861 Phosphotransferase RcsD GO:0000160|GO:0005887|GO:0009927 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Pfam PF16359 RcsD-ABL domain 684 786 1.8E-39 T 11-10-2018 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Gene3D G3DSA:1.10.287.130 425 513 3.7E-5 T 11-10-2018 BED32_14390 744f5fac93e80a8802e833971124d1c2 897 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 562 671 6.9E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_14390 744f5fac93e80a8802e833971124d1c2 897 SUPERFAMILY SSF47384 435 515 2.16E-7 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_13025 c837560eff7d949b04ce90674edbd855 411 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BED32_13025 c837560eff7d949b04ce90674edbd855 411 SUPERFAMILY SSF53187 1 406 2.39E-78 T 11-10-2018 BED32_13025 c837560eff7d949b04ce90674edbd855 411 Hamap MF_00550 Peptidase T [pepT]. 1 404 54.872 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 BED32_13025 c837560eff7d949b04ce90674edbd855 411 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 138 176 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BED32_13025 c837560eff7d949b04ce90674edbd855 411 Pfam PF07687 Peptidase dimerisation domain 206 302 1.1E-11 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain BED32_13025 c837560eff7d949b04ce90674edbd855 411 Pfam PF01546 Peptidase family M20/M25/M40 139 401 1.5E-15 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 BED32_13025 c837560eff7d949b04ce90674edbd855 411 SUPERFAMILY SSF55031 208 320 5.23E-42 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BED32_13025 c837560eff7d949b04ce90674edbd855 411 Gene3D G3DSA:3.30.70.360 208 319 8.4E-175 T 11-10-2018 BED32_13025 c837560eff7d949b04ce90674edbd855 411 Gene3D G3DSA:3.40.630.10 4 400 8.4E-175 T 11-10-2018 BED32_13025 c837560eff7d949b04ce90674edbd855 411 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 408 8.2E-156 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 BED32_13025 c837560eff7d949b04ce90674edbd855 411 PIRSF PIRSF037215 1 408 7.6E-183 T 11-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 7 638 5.4E-274 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 11 97 1.6E-20 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 SUPERFAMILY SSF81296 7 144 7.8E-46 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Pfam PF00128 Alpha amylase, catalytic domain 185 291 5.4E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Gene3D G3DSA:2.60.40.10 1 133 1.3E-47 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_01410 3491cc7237512e29dd422a297caf52ea 662 SUPERFAMILY SSF51011 576 632 1.56E-5 T 11-10-2018 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 SUPERFAMILY SSF51445 130 566 8.13E-124 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Hamap MF_01248 Glycogen debranching enzyme [glgX]. 3 660 72.531 T 11-10-2018 IPR022844 Glycogen debranching enzyme, bacterial GO:0004553|GO:0005977 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Gene3D G3DSA:2.60.40.1180 575 660 1.8E-37 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta BED32_01410 3491cc7237512e29dd422a297caf52ea 662 SMART SM00642 163 560 1.7E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_01410 3491cc7237512e29dd422a297caf52ea 662 Gene3D G3DSA:3.20.20.80 134 574 3.7E-172 T 11-10-2018 BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 Pfam PF06719 AraC-type transcriptional regulator N-terminus 28 179 4.8E-43 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 SMART SM00342 208 291 7.7E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 Gene3D G3DSA:1.10.10.60 187 295 8.1E-28 T 11-10-2018 BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 SUPERFAMILY SSF46689 244 291 1.48E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 SUPERFAMILY SSF46689 191 242 4.12E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03570 a76d5e208f82a55f4a48d5759e4e4ee8 297 Pfam PF12833 Helix-turn-helix domain 214 289 1.7E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 221 430 2.9E-52 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Gene3D G3DSA:3.30.160.110 117 152 9.9E-19 T 11-10-2018 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 SUPERFAMILY SSF53790 215 460 7.59E-81 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 PIRSF PIRSF036426 5 469 4.1E-204 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 8 210 8.7E-79 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Gene3D G3DSA:1.10.8.210 153 213 4.1E-17 T 11-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Pfam PF14824 Sirohaem biosynthesis protein central 123 149 2.5E-7 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 224 238 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Gene3D G3DSA:3.40.50.720 5 116 4.4E-32 T 11-10-2018 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Pfam PF10414 Sirohaem synthase dimerisation region 154 209 1.1E-21 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Gene3D G3DSA:3.40.1010.10 217 334 7.0E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 299 332 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Hamap MF_01646 Siroheme synthase [cysG]. 5 461 52.406 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 SUPERFAMILY SSF51735 6 117 1.5E-25 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 SUPERFAMILY SSF75615 118 214 2.35E-28 T 11-10-2018 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 219 452 2.7E-93 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Pfam PF13241 Putative NAD(P)-binding 10 119 1.9E-28 T 11-10-2018 BED32_04585 a3787b202acaf7370e653bfe65f86e20 476 Gene3D G3DSA:3.30.950.10 335 474 8.1E-46 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_04805 b8d829317a6a06de722f6314da7a6146 140 SUPERFAMILY SSF53062 1 131 1.24E-29 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_04805 b8d829317a6a06de722f6314da7a6146 140 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 113 2.9E-36 T 11-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 BED32_04805 b8d829317a6a06de722f6314da7a6146 140 Gene3D G3DSA:3.40.50.510 1 139 4.9E-31 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_04805 b8d829317a6a06de722f6314da7a6146 140 Pfam PF03610 PTS system fructose IIA component 4 113 1.2E-15 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Gene3D G3DSA:2.40.50.100 66 99 1.4E-9 T 11-10-2018 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Gene3D G3DSA:1.10.287.470 219 298 3.2E-17 T 11-10-2018 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Pfam PF13533 Biotin-lipoyl like 70 112 1.3E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_00660 7c196a7088ea9a585255b7903742accf 443 Gene3D G3DSA:2.40.50.100 299 335 3.2E-17 T 11-10-2018 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Pfam PF13437 HlyD family secretion protein 299 410 3.7E-12 T 11-10-2018 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Gene3D G3DSA:1.10.287.470 100 168 1.4E-9 T 11-10-2018 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 311 332 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 442 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 344 368 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 36 59 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 407 422 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 78 98 1.5E-49 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_00660 7c196a7088ea9a585255b7903742accf 443 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 30 443 3.3E-108 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 BED32_00660 7c196a7088ea9a585255b7903742accf 443 Gene3D G3DSA:2.40.30.170 336 420 3.2E-17 T 11-10-2018 BED32_04155 a797725804c7f1de405150cefe481dbf 321 SUPERFAMILY SSF46785 2 73 1.33E-12 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04155 a797725804c7f1de405150cefe481dbf 321 PIRSF PIRSF005739 1 321 3.5E-42 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 BED32_04155 a797725804c7f1de405150cefe481dbf 321 Pfam PF00891 O-methyltransferase 92 299 7.0E-36 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 BED32_04155 a797725804c7f1de405150cefe481dbf 321 Gene3D G3DSA:1.10.10.10 1 80 3.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04155 a797725804c7f1de405150cefe481dbf 321 Gene3D G3DSA:3.40.50.150 81 321 3.4E-62 T 11-10-2018 BED32_04155 a797725804c7f1de405150cefe481dbf 321 SUPERFAMILY SSF53335 78 318 7.77E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 3 343 8.2E-147 T 11-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 SUPERFAMILY SSF160544 238 343 7.32E-31 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 202 220 2.0E-46 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 296 317 2.0E-46 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 266 281 2.0E-46 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 6 28 2.0E-46 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 222 239 2.0E-46 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 Pfam PF01312 FlhB HrpN YscU SpaS Family 3 340 4.0E-112 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_00375 a6a3e73d13d58b5faf23313a70f0f85a 354 Gene3D G3DSA:3.40.1690.10 211 354 5.4E-54 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 1.7E-7 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 1.7E-7 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 SUPERFAMILY SSF46785 5 62 1.8E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 SMART SM00420 6 58 6.1E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 Pfam PF00455 DeoR C terminal sensor domain 74 232 2.6E-40 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 SUPERFAMILY SSF100950 74 233 7.22E-26 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 57 4.1E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 Gene3D G3DSA:1.10.10.10 1 55 6.0E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 SMART SM01134 72 233 2.7E-56 T 11-10-2018 BED32_09145 21b23bc8f4517dc553969cbe0d7a96d3 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 9.2E-137 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 SUPERFAMILY SSF51735 3 166 1.74E-69 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 6.1E-41 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 SUPERFAMILY SSF55347 149 312 1.7E-80 T 11-10-2018 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 Gene3D G3DSA:3.30.360.10 149 314 2.1E-158 T 11-10-2018 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PIRSF PIRSF000149 1 331 1.5E-134 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 1.3E-70 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 1.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 1.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 1.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 1.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 1.1E-46 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 Gene3D G3DSA:3.40.50.720 4 326 2.1E-158 T 11-10-2018 BED32_12245 bb09a6ada95ee477256704dbe462c9b5 331 SMART SM00846 3 150 1.7E-98 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02470 9592ea5fd3b18b3629e83403156ebf0c 328 Gene3D G3DSA:2.40.10.350 180 257 6.0E-35 T 11-10-2018 BED32_02470 9592ea5fd3b18b3629e83403156ebf0c 328 Pfam PF04085 rod shape-determining protein MreC 123 269 1.4E-37 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BED32_02470 9592ea5fd3b18b3629e83403156ebf0c 328 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 277 1.5E-115 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BED32_02470 9592ea5fd3b18b3629e83403156ebf0c 328 Gene3D G3DSA:2.40.10.340 122 266 6.0E-35 T 11-10-2018 BED32_02470 9592ea5fd3b18b3629e83403156ebf0c 328 PIRSF PIRSF038471 2 284 2.7E-75 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 BED32_06370 856f68b7434816b814ff9185bb28c62e 563 Pfam PF00999 Sodium/hydrogen exchanger family 13 384 4.6E-78 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BED32_06370 856f68b7434816b814ff9185bb28c62e 563 Gene3D G3DSA:3.40.50.720 413 550 5.7E-27 T 11-10-2018 BED32_06370 856f68b7434816b814ff9185bb28c62e 563 SUPERFAMILY SSF51735 418 547 1.7E-26 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_06370 856f68b7434816b814ff9185bb28c62e 563 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 294 2.9E-82 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 BED32_06370 856f68b7434816b814ff9185bb28c62e 563 Pfam PF02254 TrkA-N domain 421 534 2.5E-21 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BED32_06370 856f68b7434816b814ff9185bb28c62e 563 Gene3D G3DSA:1.20.1530.20 6 397 1.2E-78 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 Gene3D G3DSA:3.10.290.10 9 72 4.1E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 SUPERFAMILY SSF55174 19 70 2.36E-8 T 11-10-2018 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 140 154 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 Pfam PF01479 S4 domain 20 66 1.7E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 SUPERFAMILY SSF55120 95 314 5.12E-64 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 314 1.0E-92 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 Pfam PF00849 RNA pseudouridylate synthase 102 249 4.9E-31 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 Gene3D G3DSA:3.30.2350.10 92 317 3.2E-84 T 11-10-2018 BED32_13205 f1dbcac8305aff87106c88e7a9efb596 319 SMART SM00363 20 79 2.3E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_05750 f48dbb8a77db895a7d5d1ae29a9c80de 133 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 3 128 32.399 T 11-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 BED32_05750 f48dbb8a77db895a7d5d1ae29a9c80de 133 Pfam PF07417 Transcriptional regulator Crl 5 122 5.0E-55 T 11-10-2018 IPR009986 Sigma factor-binding protein Crl GO:0045893 BED32_05750 f48dbb8a77db895a7d5d1ae29a9c80de 133 Gene3D G3DSA:3.30.310.230 1 133 4.1E-58 T 11-10-2018 IPR038208 Sigma factor-binding protein Crl superfamily GO:0045893 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Gene3D G3DSA:3.40.50.10050 677 784 5.5E-37 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Gene3D G3DSA:3.40.50.300 381 554 4.4E-72 T 11-10-2018 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF03144 Elongation factor Tu domain 2 804 871 7.9E-8 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SUPERFAMILY SSF46955 3 50 2.2E-13 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF00009 Elongation factor Tu GTP binding domain 387 544 8.9E-35 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SUPERFAMILY SSF52156 661 790 9.29E-38 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SUPERFAMILY SSF52540 383 551 3.38E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF11987 Translation-initiation factor 2 668 773 1.9E-36 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SUPERFAMILY SSF50447 784 881 5.11E-35 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Gene3D G3DSA:3.30.56.50 2 50 7.7E-27 T 11-10-2018 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Gene3D G3DSA:2.40.30.10 785 882 1.9E-34 T 11-10-2018 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 57 94 4.6E-16 T 11-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 881 17.505 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 298 883 6.4E-288 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Gene3D G3DSA:2.40.30.10 555 673 7.5E-40 T 11-10-2018 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 3.2E-8 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 306 356 4.3E-14 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 ProSitePatterns PS01176 Initiation factor 2 signature. 834 856 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 386 541 1.4E-30 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SMART SM00173 380 549 0.0029 T 11-10-2018 BED32_18925 fb5d865fac0939c6c0bb8ea208b70280 884 SUPERFAMILY SSF50447 557 638 4.32E-23 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 SMART SM00354 1 71 3.6E-35 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 SUPERFAMILY SSF47413 2 59 2.22E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.4E-20 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 Gene3D G3DSA:1.10.260.40 3 59 4.9E-24 T 11-10-2018 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 Gene3D G3DSA:3.40.50.2300 161 323 2.5E-86 T 11-10-2018 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 Pfam PF13377 Periplasmic binding protein-like domain 170 330 1.4E-46 T 11-10-2018 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 SUPERFAMILY SSF53822 60 331 2.19E-90 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.3E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.3E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_21355 99b5e2a723e0a5f89d0cc0514329b880 333 Gene3D G3DSA:3.40.50.2300 69 322 2.5E-86 T 11-10-2018 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 1.7E-45 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 4 614 52.855 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 SUPERFAMILY SSF56519 57 254 7.98E-53 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 273 607 3.0E-87 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 610 2.7E-237 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Gene3D G3DSA:3.90.1310.10 65 248 4.9E-50 T 11-10-2018 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Gene3D G3DSA:3.30.1390.30 86 161 4.9E-50 T 11-10-2018 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 Gene3D G3DSA:3.40.710.10 249 619 3.4E-95 T 11-10-2018 BED32_07415 be4d8807a6b70c8d0f335ba049f115e4 631 SUPERFAMILY SSF56601 255 610 2.29E-92 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_14890 283c1929d5384458edfc70ceb7c81055 93 Pfam PF08891 YfcL protein 4 86 1.3E-34 T 11-10-2018 IPR014987 Uncharacterised protein family YfcL BED32_05690 e94a889a647ef6fe538022ed5ba4259a 335 Pfam PF02424 ApbE family 28 304 2.2E-84 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BED32_05690 e94a889a647ef6fe538022ed5ba4259a 335 SUPERFAMILY SSF143631 21 331 4.97E-101 T 11-10-2018 IPR003374 ApbE-like superfamily BED32_05690 e94a889a647ef6fe538022ed5ba4259a 335 Gene3D G3DSA:3.10.520.20 17 335 3.9E-112 T 11-10-2018 BED32_05690 e94a889a647ef6fe538022ed5ba4259a 335 PIRSF PIRSF006268 3 333 1.1E-90 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 PIRSF PIRSF000371 2 47 5.6E-11 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 PIRSF PIRSF000371 44 246 4.6E-44 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 Gene3D G3DSA:3.20.20.70 2 246 1.5E-104 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 8.4E-106 T 11-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 Pfam PF04055 Radical SAM superfamily 24 178 8.9E-31 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 SUPERFAMILY SSF102114 23 213 2.35E-22 T 11-10-2018 BED32_13705 1e945e602fd6b895c8dffe590b1851c7 246 Pfam PF13353 4Fe-4S single cluster domain 16 130 6.0E-18 T 11-10-2018 BED32_09785 8a1863b0a0d22330f98e5b073a1a9e44 90 Pfam PF10762 Protein of unknown function (DUF2583) 1 87 6.1E-46 T 11-10-2018 IPR019698 Protein of unknown function DUF2583 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82866 298 497 1.57E-47 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82693 566 672 1.78E-27 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:1.20.1640.10 516 1024 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 5.2E-108 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82693 39 131 2.62E-27 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.70.1440 675 864 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.70.1430 38 820 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1041 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82866 807 1031 3.53E-45 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Pfam PF00873 AcrB/AcrD/AcrF family 1 1027 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82714 182 272 6.41E-23 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 Gene3D G3DSA:3.30.2090.10 724 812 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82693 136 330 4.88E-24 T 11-10-2018 BED32_15525 07cf30a531125c31d6e3123fd146e513 1043 SUPERFAMILY SSF82714 723 810 9.16E-23 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 6.5E-27 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 3.4E-27 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 2.5E-58 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:2.40.50.150 833 955 3.1E-44 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.319 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1100.10 643 713 5.4E-21 T 11-10-2018 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1100.10 441 624 1.9E-70 T 11-10-2018 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1100.10 19 156 4.7E-49 T 11-10-2018 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:2.40.270.10 790 832 5.4E-7 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:2.40.270.10 1009 1242 2.1E-92 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1264 3.0E-160 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1110.10 157 271 5.8E-28 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 240 1.4E-7 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 341 454 4.4E-16 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:2.40.50.100 714 788 6.9E-32 T 11-10-2018 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.5E-30 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1800.10 1252 1306 8.1E-11 T 11-10-2018 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 Gene3D G3DSA:3.90.1110.10 317 440 3.4E-36 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19835 e1b6218c95ca5f3b8b0bc06a2b9f860f 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 11-10-2018 BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 Pfam PF00588 SpoU rRNA Methylase family 5 154 3.0E-34 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 PIRSF PIRSF004808 1 246 1.9E-76 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 2.7E-87 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 SUPERFAMILY SSF75217 3 173 4.25E-39 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 Gene3D G3DSA:1.10.8.590 168 255 5.4E-33 T 11-10-2018 BED32_16080 1d7bec69e8d9bcbfa1674eff700e9281 257 Gene3D G3DSA:3.40.1280.10 1 164 5.8E-66 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_14960 8504ea7c685057a5184d31f97a80f782 168 Pfam PF03918 Cytochrome C biogenesis protein 16 150 2.4E-55 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family BED32_14960 8504ea7c685057a5184d31f97a80f782 168 Gene3D G3DSA:1.10.8.640 23 108 1.3E-36 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 155 174 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 192 215 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 26 47 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 75 98 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 100 118 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 52 69 1.4E-72 T 11-10-2018 BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 5 215 1.4E-96 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 PIRSF PIRSF002764 1 219 2.9E-86 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria BED32_14990 37d69325cb7557affefe30855a6b8d9e 219 Pfam PF03379 CcmB protein 3 216 1.1E-92 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_13825 619d5679ee5097b47e855d91e045a132 340 SUPERFAMILY SSF63380 17 110 1.38E-19 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_13825 619d5679ee5097b47e855d91e045a132 340 Pfam PF00175 Oxidoreductase NAD-binding domain 122 225 3.7E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_13825 619d5679ee5097b47e855d91e045a132 340 Gene3D G3DSA:3.10.20.30 256 340 6.9E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_13825 619d5679ee5097b47e855d91e045a132 340 SUPERFAMILY SSF54292 235 338 5.9E-24 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_13825 619d5679ee5097b47e855d91e045a132 340 SUPERFAMILY SSF52343 116 244 6.94E-31 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_13825 619d5679ee5097b47e855d91e045a132 340 Pfam PF00970 Oxidoreductase FAD-binding domain 42 110 8.7E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BED32_13825 619d5679ee5097b47e855d91e045a132 340 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 291 299 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BED32_13825 619d5679ee5097b47e855d91e045a132 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 212 220 2.0E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_13825 619d5679ee5097b47e855d91e045a132 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 121 140 2.0E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_13825 619d5679ee5097b47e855d91e045a132 340 PRINTS PR00410 Phenol hydroxylase reductase family signature 43 55 2.0E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_13825 619d5679ee5097b47e855d91e045a132 340 Gene3D G3DSA:2.40.30.10 11 108 5.4E-18 T 11-10-2018 BED32_13825 619d5679ee5097b47e855d91e045a132 340 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 267 332 5.7E-13 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BED32_13825 619d5679ee5097b47e855d91e045a132 340 Gene3D G3DSA:3.40.50.80 112 252 6.0E-28 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_18575 e24fa9f8a2ba1cf6924b521a00e31c09 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 307 2.4E-47 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Pfam PF14561 Tetratricopeptide repeat 200 289 2.6E-30 T 11-10-2018 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Gene3D G3DSA:1.25.40.10 112 201 5.8E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 SUPERFAMILY SSF52833 4 113 1.0E-29 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Pfam PF14559 Tetratricopeptide repeat 124 195 1.1E-20 T 11-10-2018 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Pfam PF00085 Thioredoxin 8 107 1.5E-17 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Gene3D G3DSA:1.25.40.10 202 289 3.7E-26 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 SUPERFAMILY SSF48452 120 242 4.74E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_06420 6097c5f9a6d33642f19b53e372c32c76 289 Gene3D G3DSA:3.40.30.10 3 111 1.1E-26 T 11-10-2018 BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 SUPERFAMILY SSF51735 2 248 3.53E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 Gene3D G3DSA:3.40.50.720 1 248 3.1E-79 T 11-10-2018 BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 248 1.8E-57 T 11-10-2018 BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 184 0.0022 T 11-10-2018 BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 8.6E-40 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.9E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17470 fbc04083052c1e4e53cfb390059781f0 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 67 86 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 178 195 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 23 44 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 48 66 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 227 244 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00691 Adhesin B signature 270 288 2.9E-20 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 Gene3D G3DSA:3.40.50.1980 164 292 7.7E-42 T 11-10-2018 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 Gene3D G3DSA:3.40.50.1980 23 163 2.8E-41 T 11-10-2018 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 231 249 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 54 67 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 178 199 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 67 84 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 257 276 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 PRINTS PR00690 Adhesin family signature 23 41 2.2E-27 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 27 288 4.3E-77 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 BED32_06205 b3df1abdc122ddec45dbeb8d44bf26af 292 SUPERFAMILY SSF53807 20 292 6.87E-82 T 11-10-2018 BED32_01105 d606143b2cf4b0142c2fdc15cd096105 254 SUPERFAMILY SSF54197 30 247 2.04E-86 T 11-10-2018 IPR036265 HIT-like superfamily BED32_01105 d606143b2cf4b0142c2fdc15cd096105 254 Hamap MF_00319 CDP-diacylglycerol pyrophosphatase [cdh]. 2 249 40.858 T 11-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 BED32_01105 d606143b2cf4b0142c2fdc15cd096105 254 Pfam PF02611 CDP-diacylglycerol pyrophosphatase 30 247 1.6E-91 T 11-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 BED32_01105 d606143b2cf4b0142c2fdc15cd096105 254 Gene3D G3DSA:3.30.428.30 24 248 8.1E-91 T 11-10-2018 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily KEGG: 00564+3.6.1.26 BED32_01105 d606143b2cf4b0142c2fdc15cd096105 254 PIRSF PIRSF001273 1 251 2.3E-101 T 11-10-2018 IPR003763 CDP-diacylglycerol pyrophosphatase GO:0008654|GO:0008715|GO:0016020 KEGG: 00564+3.6.1.26 BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 6 289 1.5E-42 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 Gene3D G3DSA:1.10.1040.10 170 296 2.0E-33 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 170 289 1.1E-17 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 Pfam PF02558 Ketopantoate reductase PanE/ApbA 7 149 4.6E-25 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 Gene3D G3DSA:3.40.50.720 2 169 1.1E-49 T 11-10-2018 BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 SUPERFAMILY SSF48179 170 289 5.1E-22 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_09175 a9c2d29c5c0bf4803c32b1ca062513c3 296 SUPERFAMILY SSF51735 6 173 8.02E-10 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_15140 dc4f2e66a41396d0b631bf5063d8d411 381 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 137 377 4.2E-71 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BED32_15140 dc4f2e66a41396d0b631bf5063d8d411 381 Pfam PF02405 Permease MlaE 165 374 3.0E-66 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 BED32_09520 c41e2e7a05e4f7aeec763e30e5902ea0 291 Pfam PF01618 MotA/TolQ/ExbB proton channel family 135 235 4.9E-11 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BED32_09520 c41e2e7a05e4f7aeec763e30e5902ea0 291 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 277 2.6E-116 T 11-10-2018 IPR022522 Flagellar motor stator, MotA BED32_09520 c41e2e7a05e4f7aeec763e30e5902ea0 291 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 201 218 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 TIGRFAM TIGR00032 argG: argininosuccinate synthase 13 419 3.2E-165 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 129 140 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 SUPERFAMILY SSF52402 3 186 4.19E-35 T 11-10-2018 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 Gene3D G3DSA:1.10.287.400 377 440 3.3E-33 T 11-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 Gene3D G3DSA:3.40.50.620 14 191 1.2E-118 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 Gene3D G3DSA:3.90.1260.10 74 367 1.2E-118 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 SUPERFAMILY SSF69864 190 442 8.11E-79 T 11-10-2018 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 Pfam PF00764 Arginosuccinate synthase 16 410 5.0E-57 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 Hamap MF_00581 Argininosuccinate synthase [argG]. 1 450 73.615 T 11-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_09120 6bda74b200a58a228fc3bf1181eb7650 454 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 17 25 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_08800 12abc07297a82118ad1a85a599d58bef 105 Pfam PF04363 Protein of unknown function (DUF496) 9 100 6.5E-46 T 11-10-2018 IPR007458 Protein of unknown function DUF496 BED32_08800 12abc07297a82118ad1a85a599d58bef 105 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 25.495 T 11-10-2018 IPR007458 Protein of unknown function DUF496 BED32_08800 12abc07297a82118ad1a85a599d58bef 105 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 12 99 1.0E-41 T 11-10-2018 IPR007458 Protein of unknown function DUF496 BED32_08800 12abc07297a82118ad1a85a599d58bef 105 PIRSF PIRSF028773 1 105 2.6E-49 T 11-10-2018 IPR007458 Protein of unknown function DUF496 BED32_13835 ed512a05fa25b638d0fa4d5906f85682 238 Pfam PF04072 Leucine carboxyl methyltransferase 16 139 8.7E-27 T 11-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 BED32_13835 ed512a05fa25b638d0fa4d5906f85682 238 TIGRFAM TIGR00027 mthyl_TIGR00027: methyltransferase, TIGR00027 family 13 216 2.5E-35 T 11-10-2018 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative GO:0008168 BED32_13835 ed512a05fa25b638d0fa4d5906f85682 238 SUPERFAMILY SSF53335 13 228 8.31E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_13835 ed512a05fa25b638d0fa4d5906f85682 238 Gene3D G3DSA:3.40.50.150 4 221 2.4E-33 T 11-10-2018 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 SUPERFAMILY SSF58014 44 133 8.5E-27 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 Gene3D G3DSA:2.30.22.10 133 189 5.2E-26 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 Gene3D G3DSA:3.90.20.20 30 132 4.9E-34 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 SUPERFAMILY SSF51064 134 190 1.11E-18 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 Hamap MF_01151 Protein GrpE [grpE]. 4 189 21.581 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 Pfam PF01025 GrpE 20 189 7.2E-49 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 ProSitePatterns PS01071 grpE protein signature. 144 187 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 PRINTS PR00773 GrpE protein signature 86 101 4.0E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 PRINTS PR00773 GrpE protein signature 168 187 4.0E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 PRINTS PR00773 GrpE protein signature 58 74 4.0E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_16335 23b42843562f02fc01ff0bb3e2cc58ac 192 PRINTS PR00773 GrpE protein signature 141 156 4.0E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 ProSitePatterns PS01068 OmpA-like domain. 268 312 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 Pfam PF00691 OmpA family 233 326 6.7E-20 T 11-10-2018 IPR006665 OmpA-like domain BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 Pfam PF01389 OmpA-like transmembrane domain 23 205 4.6E-69 T 11-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01021 OMPA domain signature 281 297 1.8E-20 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01021 OMPA domain signature 234 256 1.8E-20 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01021 OMPA domain signature 266 281 1.8E-20 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 Gene3D G3DSA:3.30.1330.60 210 354 6.8E-55 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 SUPERFAMILY SSF56925 22 205 2.88E-39 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 Gene3D G3DSA:2.40.160.20 22 203 3.1E-68 T 11-10-2018 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 113 129 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 324 337 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 222 237 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 190 204 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 251 270 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 176 190 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 PRINTS PR01022 Outer membrane protein A signature 290 309 1.2E-62 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 BED32_13470 d642ad9554e975b4c059bde6cae751e0 357 SUPERFAMILY SSF103088 220 345 1.31E-32 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Hamap MF_01856 Ribosomal RNA small subunit methyltransferase B [rsmB]. 1 429 69.51 T 11-10-2018 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae GO:0008649 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Pfam PF01029 NusB family 6 127 2.8E-24 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Gene3D G3DSA:3.40.50.150 231 429 1.4E-71 T 11-10-2018 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 8 429 8.7E-172 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Gene3D G3DSA:1.10.940.10 1 145 9.3E-48 T 11-10-2018 IPR035926 NusB-like superfamily BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Gene3D G3DSA:1.10.287.730 146 172 4.3E-15 T 11-10-2018 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 5.4E-31 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 411 428 5.4E-31 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 317 329 5.4E-31 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 367 383 5.4E-31 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 5.4E-31 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 316 327 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 426 7.2E-76 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 SUPERFAMILY SSF53335 142 429 2.56E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 SUPERFAMILY SSF48013 6 149 9.32E-36 T 11-10-2018 IPR035926 NusB-like superfamily BED32_02040 e6a23e8c866f0119ceed1c3a0f67a393 429 Gene3D G3DSA:3.30.70.1170 173 230 2.2E-25 T 11-10-2018 BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 SUPERFAMILY SSF55073 144 298 2.35E-46 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 137 298 5.6E-54 T 11-10-2018 IPR000160 GGDEF domain BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 Pfam PF05230 MASE2 domain 2 56 4.5E-20 T 11-10-2018 IPR007894 MASE2 BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 Gene3D G3DSA:3.30.70.270 124 299 6.1E-52 T 11-10-2018 BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 SMART SM00267 128 299 2.7E-57 T 11-10-2018 IPR000160 GGDEF domain BED32_07375 881ef5a0d0f3b52aca1b012ecbe52dd5 300 Pfam PF00990 Diguanylate cyclase, GGDEF domain 140 295 4.1E-45 T 11-10-2018 IPR000160 GGDEF domain BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 SMART SM00247 25 108 0.0059 T 11-10-2018 IPR001064 Beta/gamma crystallin BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 Gene3D G3DSA:2.60.20.10 109 206 2.7E-20 T 11-10-2018 BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 Gene3D G3DSA:2.60.20.10 4 108 2.8E-19 T 11-10-2018 BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 Gene3D G3DSA:3.40.630.30 686 838 5.2E-7 T 11-10-2018 BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 SUPERFAMILY SSF55729 737 835 9.3E-7 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 Pfam PF03995 Peptidase inhibitor family I36 22 80 4.6E-6 T 11-10-2018 BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 SUPERFAMILY SSF49695 23 104 2.08E-13 T 11-10-2018 IPR011024 Gamma-crystallin-like BED32_18190 c2d51fecff2ab7d18b6f4fb6f614c4f5 838 SUPERFAMILY SSF49695 100 204 8.83E-10 T 11-10-2018 IPR011024 Gamma-crystallin-like BED32_07380 4d3c21f143418211aa045db10aae6b74 71 Pfam PF02416 mttA/Hcf106 family 4 46 6.7E-11 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BED32_07380 4d3c21f143418211aa045db10aae6b74 71 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 5.3E-18 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BED32_07380 4d3c21f143418211aa045db10aae6b74 71 Hamap MF_00903 Probable Sec-independent protein translocase protein TatE [tatE]. 1 71 27.861 T 11-10-2018 IPR024905 Sec-independent protein translocase protein TatE BED32_07380 4d3c21f143418211aa045db10aae6b74 71 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 68 18.836 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BED32_06430 aca0f9e3099db17dc4791ac5fe2c7879 211 Gene3D G3DSA:3.40.50.1110 27 211 9.5E-72 T 11-10-2018 IPR036514 SGNH hydrolase superfamily BED32_06430 aca0f9e3099db17dc4791ac5fe2c7879 211 SUPERFAMILY SSF52266 29 206 6.91E-51 T 11-10-2018 BED32_06430 aca0f9e3099db17dc4791ac5fe2c7879 211 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 30 40 - T 11-10-2018 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 Reactome: R-HSA-1482788|Reactome: R-HSA-975634 BED32_06430 aca0f9e3099db17dc4791ac5fe2c7879 211 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 190 3.3E-24 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain BED32_12050 67326c5df2b367a586cfddf415a475f9 156 Gene3D G3DSA:3.10.129.10 16 154 1.6E-43 T 11-10-2018 BED32_12050 67326c5df2b367a586cfddf415a475f9 156 SUPERFAMILY SSF54637 22 146 1.09E-38 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_12050 67326c5df2b367a586cfddf415a475f9 156 Pfam PF03061 Thioesterase superfamily 40 111 1.8E-18 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 Gene3D G3DSA:1.10.260.40 1 58 9.8E-24 T 11-10-2018 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 SUPERFAMILY SSF53822 61 336 1.86E-69 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 Gene3D G3DSA:3.40.50.2300 75 306 7.6E-71 T 11-10-2018 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 SUPERFAMILY SSF47413 2 59 5.23E-19 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 Pfam PF13377 Periplasmic binding protein-like domain 172 331 1.2E-31 T 11-10-2018 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 6.2E-21 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 Gene3D G3DSA:3.40.50.2300 162 292 7.6E-71 T 11-10-2018 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 8.0E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 8.0E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_15100 8ea4305260651ce258dbd942b218ca8f 343 SMART SM00354 1 71 8.7E-34 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Pfam PF06827 Zinc finger found in FPG and IleRS 241 269 9.3E-10 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 SUPERFAMILY SSF81624 2 138 3.27E-44 T 11-10-2018 IPR035937 MutM-like, N-terminal BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 9.2E-32 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 5.0E-103 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 43.785 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 11-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 SMART SM01232 129 221 1.7E-48 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 SUPERFAMILY SSF46946 130 222 3.14E-30 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 SUPERFAMILY SSF57716 217 268 1.74E-16 T 11-10-2018 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Gene3D G3DSA:3.20.190.10 2 128 4.0E-44 T 11-10-2018 IPR035937 MutM-like, N-terminal BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 1.5E-26 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 SMART SM00898 2 115 1.9E-55 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 BED32_20985 87decad775909ed0f927c8c8b2dbecad 269 Gene3D G3DSA:1.10.8.50 139 269 9.2E-47 T 11-10-2018 BED32_17270 ea2e6d0beb0b1a488407f3735b5b089d 326 Gene3D G3DSA:1.10.3290.10 10 225 5.3E-45 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_17270 ea2e6d0beb0b1a488407f3735b5b089d 326 SUPERFAMILY SSF140931 33 216 1.44E-31 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_17270 ea2e6d0beb0b1a488407f3735b5b089d 326 Pfam PF02661 Fic/DOC family 56 156 1.8E-19 T 11-10-2018 IPR003812 Fido domain BED32_17270 ea2e6d0beb0b1a488407f3735b5b089d 326 Gene3D G3DSA:1.10.10.10 233 299 3.1E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06340 f31850c0d877b715ea71c39860273145 247 Pfam PF00534 Glycosyl transferases group 1 55 224 9.0E-34 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_06340 f31850c0d877b715ea71c39860273145 247 Gene3D G3DSA:3.40.50.2000 43 229 1.3E-55 T 11-10-2018 BED32_06340 f31850c0d877b715ea71c39860273145 247 SUPERFAMILY SSF53756 4 244 2.92E-59 T 11-10-2018 BED32_06340 f31850c0d877b715ea71c39860273145 247 Gene3D G3DSA:3.40.50.2000 3 238 1.3E-55 T 11-10-2018 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 Gene3D G3DSA:3.30.860.10 1 92 3.9E-43 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.1E-45 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 Pfam PF00203 Ribosomal protein S19 3 83 1.3E-35 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.5E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.5E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.5E-24 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 PIRSF PIRSF002144 1 92 2.3E-31 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.571 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01895 b809f598f80073bab3bc75627b009ce4 92 SUPERFAMILY SSF54570 3 84 5.75E-35 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_04845 c32479149d40a2cb95293d7844798900 350 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 325 7.4E-33 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_00635 5fed7b7ecb8ee2adc0f7bf668e9eff73 206 Gene3D G3DSA:3.30.1500.10 1 194 5.9E-79 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_00635 5fed7b7ecb8ee2adc0f7bf668e9eff73 206 SUPERFAMILY SSF54621 2 176 1.28E-40 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_00635 5fed7b7ecb8ee2adc0f7bf668e9eff73 206 Pfam PF06438 Heme-binding protein A (HasA) 1 206 2.6E-74 T 11-10-2018 IPR010495 Haem-binding HasA BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 Gene3D G3DSA:1.10.150.210 121 183 4.6E-117 T 11-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 Pfam PF12710 haloacid dehalogenase-like hydrolase 150 282 8.6E-17 T 11-10-2018 BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 98 316 1.1E-88 T 11-10-2018 BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 Gene3D G3DSA:3.40.50.1000 107 316 4.6E-117 T 11-10-2018 IPR023214 HAD superfamily BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 Gene3D G3DSA:3.30.70.2020 38 320 4.6E-117 T 11-10-2018 BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 113 283 5.3E-24 T 11-10-2018 BED32_18325 0bde4760f74fd9f325ae31b9181591ef 325 SUPERFAMILY SSF56784 112 316 1.35E-48 T 11-10-2018 IPR036412 HAD-like superfamily BED32_22095 76979d35b24629e9c76e2900ecd777be 123 Gene3D G3DSA:1.10.10.10 18 113 9.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_22095 76979d35b24629e9c76e2900ecd777be 123 Pfam PF07180 CaiF/GrlA transcriptional regulator 19 112 1.2E-10 T 11-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 2.5E-57 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 Pfam PF00230 Major intrinsic protein 2 221 1.0E-47 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 165 187 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 135 153 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 2 21 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 42 66 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 79 98 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 PRINTS PR00783 Major intrinsic protein family signature 204 224 2.8E-53 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 33.411 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 Gene3D G3DSA:1.20.1080.10 1 227 9.3E-81 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 SUPERFAMILY SSF81338 1 227 4.84E-66 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_08240 c9834b561247e35c62a43a0cbf456b8a 234 ProSitePatterns PS00221 MIP family signature. 60 68 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 Gene3D G3DSA:3.40.50.12780 12 451 2.1E-116 T 11-10-2018 BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 Gene3D G3DSA:3.30.300.310 456 558 6.9E-30 T 11-10-2018 BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 Pfam PF00501 AMP-binding enzyme 29 460 4.4E-109 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 SUPERFAMILY SSF56801 17 553 9.03E-148 T 11-10-2018 BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 Pfam PF13193 AMP-binding enzyme C-terminal domain 469 543 5.9E-16 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BED32_10285 a464b2f6cb892645ca63de5f67cc08f5 564 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 11-10-2018 IPR020845 AMP-binding, conserved site BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 SMART SM00388 221 288 1.8E-6 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 SMART SM00387 330 438 4.6E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 Pfam PF00512 His Kinase A (phospho-acceptor) domain 222 283 1.7E-8 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 397 7.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 7.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 7.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 7.9E-15 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 436 3.9E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 SUPERFAMILY SSF55874 275 439 4.45E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 Gene3D G3DSA:3.30.565.10 288 446 8.5E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 Gene3D G3DSA:1.10.287.130 226 286 2.5E-12 T 11-10-2018 BED32_21550 23c181b1e3ec6561ca2cd5d169bfce49 449 SUPERFAMILY SSF47384 213 282 8.63E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_17230 bb21ec76290a59f26574bd695fc5761e 251 SUPERFAMILY SSF53056 42 250 6.41E-52 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BED32_17230 bb21ec76290a59f26574bd695fc5761e 251 Pfam PF00484 Carbonic anhydrase 98 247 2.0E-34 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_17230 bb21ec76290a59f26574bd695fc5761e 251 SMART SM00947 91 251 5.2E-42 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_17230 bb21ec76290a59f26574bd695fc5761e 251 Gene3D G3DSA:3.40.1050.10 47 251 2.9E-55 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 SMART SM00346 27 117 2.8E-33 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 Gene3D G3DSA:1.10.10.10 25 100 6.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 SUPERFAMILY SSF46785 27 100 1.24E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 Pfam PF01614 Bacterial transcriptional regulator 148 271 1.9E-39 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 Gene3D G3DSA:3.30.450.40 101 278 5.9E-66 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 SUPERFAMILY SSF55781 98 274 7.85E-50 T 11-10-2018 BED32_02135 cd9055c6143a3de543db92b50b4245b1 279 Pfam PF09339 IclR helix-turn-helix domain 29 79 3.1E-18 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BED32_10135 ea0ae9fb2c753aa407fbc34ba6aabca3 113 Pfam PF02371 Transposase IS116/IS110/IS902 family 8 60 7.4E-13 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 94 126 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 Gene3D G3DSA:3.40.1010.10 1 128 7.4E-29 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 3 231 9.4E-76 T 11-10-2018 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 Gene3D G3DSA:3.30.950.10 129 236 1.5E-17 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 210 3.5E-45 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 PIRSF PIRSF036427 1 236 9.7E-71 T 11-10-2018 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 BED32_09005 ee18bd306da43bf0e772033a77afe841 237 SUPERFAMILY SSF53790 1 234 2.88E-42 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_17695 7c1fc14d03da4f19f7b21a32ada8c7ac 178 SUPERFAMILY SSF53271 3 173 8.52E-56 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_17695 7c1fc14d03da4f19f7b21a32ada8c7ac 178 Pfam PF00156 Phosphoribosyl transferase domain 12 160 5.9E-26 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BED32_17695 7c1fc14d03da4f19f7b21a32ada8c7ac 178 Gene3D G3DSA:3.40.50.2020 1 176 9.8E-67 T 11-10-2018 BED32_17695 7c1fc14d03da4f19f7b21a32ada8c7ac 178 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 173 2.5E-74 T 11-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 BED32_08345 9c447e3ce4513688bcbc416bab3a6800 312 Pfam PF01545 Cation efflux family 22 221 6.7E-35 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_08345 9c447e3ce4513688bcbc416bab3a6800 312 Gene3D G3DSA:1.20.1510.10 19 223 6.2E-24 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_08345 9c447e3ce4513688bcbc416bab3a6800 312 SUPERFAMILY SSF161111 16 223 5.75E-35 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 SUPERFAMILY SSF51395 11 319 1.3E-88 T 11-10-2018 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 48.706 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 Gene3D G3DSA:1.10.1200.80 253 321 4.0E-7 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 2.5E-114 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 Gene3D G3DSA:3.20.20.70 7 248 1.1E-76 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 1.1E-135 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 BED32_02410 a73282728f78cd7cf6b588c0bf220e86 321 PIRSF PIRSF006621 1 321 6.1E-100 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_12670 7e767107c3d7271754bf311fe437e447 85 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 6.0E-19 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 BED32_12670 7e767107c3d7271754bf311fe437e447 85 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 48 4.5E-27 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 BED32_12670 7e767107c3d7271754bf311fe437e447 85 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 59 19.896 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 Gene3D G3DSA:3.90.1150.10 289 425 1.2E-51 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 SUPERFAMILY SSF53383 1 421 1.71E-135 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 PIRSF PIRSF001434 1 424 1.5E-134 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 Gene3D G3DSA:3.40.640.10 1 285 9.4E-108 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 420 5.3E-146 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_12890 6399d26d23a17b4205b5bdbf6147fafe 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 420 4.5E-209 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 3.5E-93 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 SUPERFAMILY SSF51366 3 218 5.23E-76 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 Gene3D G3DSA:3.20.20.70 4 221 7.8E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 PIRSF PIRSF001461 1 225 3.9E-106 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 2.6E-98 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BED32_01640 3376a8cba567119a650c96bbe0d51b85 225 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 BED32_14430 0c07c91a61ab94d1ce7bfc921f0509d1 168 Pfam PF03974 Ecotin 36 158 2.1E-49 T 11-10-2018 IPR005658 Proteinase inhibitor I11, ecotin BED32_14430 0c07c91a61ab94d1ce7bfc921f0509d1 168 Gene3D G3DSA:2.60.40.550 22 168 7.1E-62 T 11-10-2018 BED32_14430 0c07c91a61ab94d1ce7bfc921f0509d1 168 Hamap MF_00706 Ecotin [eco]. 4 168 39.447 T 11-10-2018 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria BED32_14430 0c07c91a61ab94d1ce7bfc921f0509d1 168 SUPERFAMILY SSF49772 32 166 1.57E-53 T 11-10-2018 IPR036198 Ecotin superfamily BED32_14430 0c07c91a61ab94d1ce7bfc921f0509d1 168 PIRSF PIRSF006865 1 168 2.5E-65 T 11-10-2018 IPR005658 Proteinase inhibitor I11, ecotin BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 Gene3D G3DSA:3.30.2110.10 29 198 3.3E-48 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 27 377 31.099 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 34 377 8.5E-88 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 SUPERFAMILY SSF111342 15 301 6.54E-89 T 11-10-2018 IPR036074 CbiD superfamily GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 PIRSF PIRSF026782 23 384 8.2E-132 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_08965 4c3a24af33e0870151d7ecadff776d76 388 Pfam PF01888 CbiD 28 283 1.2E-94 T 11-10-2018 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00860+2.1.1.195|MetaCyc: PWY-7377 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 Gene3D G3DSA:3.40.640.10 57 283 1.0E-131 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 Pfam PF00155 Aminotransferase class I and II 41 378 1.0E-62 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 Gene3D G3DSA:3.90.1150.10 40 376 1.0E-131 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 3 382 48.755 T 11-10-2018 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 233 242 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 SUPERFAMILY SSF53383 4 379 1.77E-103 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_07980 1bd0e9c59ecf2b98ab088ca743b4f7ee 383 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 20 379 1.4E-138 T 11-10-2018 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 SUPERFAMILY SSF51735 271 562 2.06E-94 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 4 565 71.455 T 11-10-2018 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38|MetaCyc: PWY-6339 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 ProSitePatterns PS00331 Malic enzymes signature. 267 283 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 SUPERFAMILY SSF53223 6 270 4.32E-111 T 11-10-2018 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 Gene3D G3DSA:3.40.50.720 269 565 1.8E-109 T 11-10-2018 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PIRSF PIRSF000106 3 563 1.1E-228 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 Pfam PF03949 Malic enzyme, NAD binding domain 271 530 6.7E-103 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 87 111 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 242 260 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 408 424 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 147 176 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 183 205 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 267 283 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 PRINTS PR00072 Malic enzyme signature 298 314 1.2E-71 T 11-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 SMART SM00919 271 531 1.3E-132 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 SMART SM01274 81 261 1.4E-109 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 Pfam PF00390 Malic enzyme, N-terminal domain 81 261 3.4E-79 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BED32_08540 43a5f79df1cea4a31d6878ba04f0577e 565 Gene3D G3DSA:3.40.50.10380 18 268 2.4E-115 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Pfam PF00571 CBS domain 375 424 2.8E-6 T 11-10-2018 IPR000644 CBS domain BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Pfam PF00571 CBS domain 304 360 0.0019 T 11-10-2018 IPR000644 CBS domain BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 SUPERFAMILY SSF56176 439 522 3.54E-21 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Pfam PF03471 Transporter associated domain 442 518 7.1E-17 T 11-10-2018 IPR005170 Transporter-associated domain BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 SUPERFAMILY SSF54631 292 426 9.47E-25 T 11-10-2018 BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Gene3D G3DSA:3.10.580.10 285 436 8.6E-40 T 11-10-2018 BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Pfam PF03741 Integral membrane protein TerC family 15 203 2.2E-48 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 SMART SM01091 441 520 6.4E-25 T 11-10-2018 IPR005170 Transporter-associated domain BED32_08615 f69b7e7f12e59c61d5c7c8db173b582f 528 Gene3D G3DSA:3.30.465.10 437 520 2.7E-19 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_09255 53c09933b06a945206681597ea4a2199 182 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 15 176 1.3E-53 T 11-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 BED32_09255 53c09933b06a945206681597ea4a2199 182 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 14 176 7.8E-53 T 11-10-2018 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 BED32_03860 36197c7c087f3f5b57aa5a8eeb04431e 143 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 7 139 4.9E-20 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BED32_03860 36197c7c087f3f5b57aa5a8eeb04431e 143 Pfam PF02050 Flagellar FliJ protein 21 136 1.6E-8 T 11-10-2018 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 Pfam PF03545 Yersinia virulence determinant (YopE) 102 170 2.8E-34 T 11-10-2018 IPR014773 Virulence factor YopE, GAP domain BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 SUPERFAMILY SSF69635 1 53 4.08E-28 T 11-10-2018 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 150 168 1.1E-53 T 11-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 175 192 1.1E-53 T 11-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 60 77 1.1E-53 T 11-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 102 119 1.1E-53 T 11-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 PRINTS PR01372 Yersinia virulence determinant YopE protein signature 16 33 1.1E-53 T 11-10-2018 IPR003537 Yersinia virulence determinant YopE GO:0005096 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 Pfam PF09020 YopE, N terminal 1 101 1.4E-64 T 11-10-2018 IPR015110 YopE, N-terminal domain GO:0050765 BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 Gene3D G3DSA:1.20.120.260 65 194 1.2E-56 T 11-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily BED32_00270 8d938d950e8b09978b167548bc0af3ec 194 SUPERFAMILY SSF47233 76 194 1.83E-48 T 11-10-2018 IPR037168 Virulence factor YopE, GAP domain superfamily BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 PRINTS PR00050 Cold shock protein signature 7 22 1.7E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 PRINTS PR00050 Cold shock protein signature 43 61 1.7E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 PRINTS PR00050 Cold shock protein signature 28 37 1.7E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 Gene3D G3DSA:2.40.50.140 2 68 1.6E-30 T 11-10-2018 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 SMART SM00357 6 70 3.3E-33 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 SUPERFAMILY SSF50249 3 69 5.31E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.4E-33 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_02385 bf668bd46370239ba10ec2935e31fd9c 70 PIRSF PIRSF002599 1 70 7.5E-25 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_00585 565a2fd799ede53726702e8f6e5120c2 105 Hamap MF_00744 Met repressor [metJ]. 1 105 40.23 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 BED32_00585 565a2fd799ede53726702e8f6e5120c2 105 Gene3D G3DSA:1.10.140.10 2 105 7.7E-63 T 11-10-2018 IPR023453 Methionine repressor MetJ domain superfamily BED32_00585 565a2fd799ede53726702e8f6e5120c2 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 5.3E-58 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 BED32_00585 565a2fd799ede53726702e8f6e5120c2 105 SUPERFAMILY SSF47598 2 105 3.78E-57 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_00585 565a2fd799ede53726702e8f6e5120c2 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 8.0E-49 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 BED32_21490 8053fdc8bbf9558c07c681ffd0908b97 318 Gene3D G3DSA:1.10.3720.10 70 316 1.1E-32 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21490 8053fdc8bbf9558c07c681ffd0908b97 318 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 311 2.9E-93 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 BED32_21490 8053fdc8bbf9558c07c681ffd0908b97 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 312 1.8E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_21490 8053fdc8bbf9558c07c681ffd0908b97 318 SUPERFAMILY SSF161098 27 304 5.49E-34 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13045 93960457988ec9f48fbe7041e87342d8 234 SUPERFAMILY SSF52540 6 227 2.28E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13045 93960457988ec9f48fbe7041e87342d8 234 Pfam PF00005 ABC transporter 26 174 4.8E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13045 93960457988ec9f48fbe7041e87342d8 234 Gene3D G3DSA:3.40.50.300 4 231 6.3E-65 T 11-10-2018 BED32_13045 93960457988ec9f48fbe7041e87342d8 234 SMART SM00382 35 223 3.8E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13045 93960457988ec9f48fbe7041e87342d8 234 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13045 93960457988ec9f48fbe7041e87342d8 234 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 6 225 2.7E-109 T 11-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 SUPERFAMILY SSF81345 351 661 3.79E-70 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 SUPERFAMILY SSF81345 9 329 4.18E-60 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 Gene3D G3DSA:1.10.3470.10 344 664 2.4E-77 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 Pfam PF01032 FecCD transport family 368 661 5.6E-72 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 Pfam PF01032 FecCD transport family 19 327 4.3E-66 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_17605 23570450c8042205f29c8828d9f3f7b3 664 Gene3D G3DSA:1.10.3470.10 6 334 5.2E-71 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 Hamap MF_00958 Regulator of RpoS [rssB]. 1 337 55.744 T 11-10-2018 IPR028616 Regulator of RpoS BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 SUPERFAMILY SSF52172 7 148 1.27E-31 T 11-10-2018 IPR011006 CheY-like superfamily BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 SMART SM00448 8 120 1.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 Gene3D G3DSA:3.60.40.10 142 319 4.2E-9 T 11-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 Gene3D G3DSA:3.40.50.2300 2 130 7.8E-32 T 11-10-2018 BED32_12145 bb8bf7069b02ebc57c3b9d7d05cfc445 338 Pfam PF00072 Response regulator receiver domain 10 120 7.4E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_18420 cb81260eba5d43c73d250f84964859a3 366 Gene3D G3DSA:3.30.70.270 182 357 2.1E-49 T 11-10-2018 BED32_18420 cb81260eba5d43c73d250f84964859a3 366 SMART SM00267 185 355 1.1E-49 T 11-10-2018 IPR000160 GGDEF domain BED32_18420 cb81260eba5d43c73d250f84964859a3 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 197 350 4.4E-45 T 11-10-2018 IPR000160 GGDEF domain BED32_18420 cb81260eba5d43c73d250f84964859a3 366 SUPERFAMILY SSF55073 201 356 2.04E-42 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_18420 cb81260eba5d43c73d250f84964859a3 366 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 195 354 5.9E-44 T 11-10-2018 IPR000160 GGDEF domain BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Gene3D G3DSA:1.10.150.80 294 373 3.6E-29 T 11-10-2018 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 SMART SM00474 3 171 7.1E-40 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Gene3D G3DSA:3.30.420.10 1 194 1.2E-63 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 SUPERFAMILY SSF47819 295 372 6.02E-23 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Pfam PF00570 HRDC domain 214 279 7.6E-15 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 371 9.5E-145 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 371 45.196 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Pfam PF01612 3'-5' exonuclease 3 168 1.2E-34 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 SUPERFAMILY SSF47819 194 300 5.01E-28 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 Gene3D G3DSA:1.10.150.80 195 293 1.1E-21 T 11-10-2018 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 SMART SM00341 210 289 9.2E-15 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BED32_10290 482013faad2eeb6efea39cfa75472bdf 373 SUPERFAMILY SSF53098 2 210 5.85E-63 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 Gene3D G3DSA:4.10.640.10 20 75 1.9E-28 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 Pfam PF01084 Ribosomal protein S18 19 68 4.8E-24 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 SUPERFAMILY SSF46911 3 74 1.07E-28 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 1.0E-22 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 2.3E-36 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.759 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.3E-17 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.3E-17 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.3E-17 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19140 3f4b75464bdfc56f443a4f9c474a954f 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.3E-17 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_17065 d8d9304ccc379c88de347110ce3fe001 290 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 280 1.2E-79 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BED32_17065 d8d9304ccc379c88de347110ce3fe001 290 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 286 6.2E-105 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BED32_17065 d8d9304ccc379c88de347110ce3fe001 290 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BED32_17065 d8d9304ccc379c88de347110ce3fe001 290 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 285 20.484 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 3.0E-14 T 11-10-2018 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 Pfam PF00453 Ribosomal protein L20 3 109 4.2E-49 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.795 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 SUPERFAMILY SSF74731 3 117 1.19E-50 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 Gene3D G3DSA:1.10.1900.20 56 118 1.4E-28 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 Gene3D G3DSA:1.10.720.90 2 55 5.8E-25 T 11-10-2018 BED32_10655 34e232fd890b3151fd38a67a38674ae1 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.0E-52 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 SUPERFAMILY SSF50182 114 179 7.52E-17 T 11-10-2018 IPR010920 LSM domain superfamily BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 Gene3D G3DSA:3.30.70.100 179 273 2.3E-25 T 11-10-2018 BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 Pfam PF00924 Mechanosensitive ion channel 72 268 3.5E-55 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 SUPERFAMILY SSF82861 28 112 1.29E-15 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 SUPERFAMILY SSF82689 181 279 1.44E-30 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 Pfam PF05552 Conserved TM helix 15 64 3.6E-14 T 11-10-2018 IPR008910 Conserved TM helix BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 Gene3D G3DSA:2.30.30.60 129 177 8.1E-21 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BED32_04465 1c08f1b9051a22d412810903a4065e7a 289 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 143 177 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 BED32_08385 8de0cac030a31649cf1f14b2b05e2738 219 Pfam PF00005 ABC transporter 22 169 3.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08385 8de0cac030a31649cf1f14b2b05e2738 219 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08385 8de0cac030a31649cf1f14b2b05e2738 219 SMART SM00382 30 217 9.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08385 8de0cac030a31649cf1f14b2b05e2738 219 SUPERFAMILY SSF52540 1 218 1.44E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08385 8de0cac030a31649cf1f14b2b05e2738 219 Gene3D G3DSA:3.40.50.300 1 219 2.6E-61 T 11-10-2018 BED32_07810 b35b01015ea58918ddcf0b205b2e627f 225 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 1 221 43.455 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 BED32_07810 b35b01015ea58918ddcf0b205b2e627f 225 Pfam PF01618 MotA/TolQ/ExbB proton channel family 76 204 5.0E-42 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BED32_07810 b35b01015ea58918ddcf0b205b2e627f 225 TIGRFAM TIGR02796 tolQ: protein TolQ 2 216 6.2E-94 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-10-2018 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 210 232 - T 11-10-2018 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 9.7E-34 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 Gene3D G3DSA:3.30.1240.10 82 184 2.5E-54 T 11-10-2018 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 Hamap MF_01847 HMP-PP phosphatase [cof]. 1 273 64.032 T 11-10-2018 IPR023938 HMP-PP phosphatase GO:0016818 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 2.6E-53 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 SUPERFAMILY SSF56784 1 262 1.05E-60 T 11-10-2018 IPR036412 HAD-like superfamily BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 1.0E-52 T 11-10-2018 BED32_06125 46e136dd436b7ef37c371cbe82d114ae 273 Gene3D G3DSA:3.40.50.1000 6 254 2.5E-54 T 11-10-2018 IPR023214 HAD superfamily BED32_18785 3a6826ca53a27b4a1f405aff08dbdce7 95 Gene3D G3DSA:3.30.2310.20 1 95 6.5E-28 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_18785 3a6826ca53a27b4a1f405aff08dbdce7 95 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 83 5.9E-13 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BED32_18785 3a6826ca53a27b4a1f405aff08dbdce7 95 SUPERFAMILY SSF143011 1 82 2.75E-21 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_18785 3a6826ca53a27b4a1f405aff08dbdce7 95 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 86 2.2E-8 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BED32_11715 b711985749d8d4f7d8bab428b8fcd9dc 156 SUPERFAMILY SSF103370 1 145 2.62E-43 T 11-10-2018 IPR036619 NinB superfamily BED32_11715 b711985749d8d4f7d8bab428b8fcd9dc 156 Gene3D G3DSA:1.10.3790.10 1 149 6.3E-52 T 11-10-2018 IPR036619 NinB superfamily BED32_11715 b711985749d8d4f7d8bab428b8fcd9dc 156 Pfam PF05772 NinB protein 3 132 1.5E-48 T 11-10-2018 IPR008711 Recombinase NinB BED32_05390 b711985749d8d4f7d8bab428b8fcd9dc 156 SUPERFAMILY SSF103370 1 145 2.62E-43 T 11-10-2018 IPR036619 NinB superfamily BED32_05390 b711985749d8d4f7d8bab428b8fcd9dc 156 Gene3D G3DSA:1.10.3790.10 1 149 6.3E-52 T 11-10-2018 IPR036619 NinB superfamily BED32_05390 b711985749d8d4f7d8bab428b8fcd9dc 156 Pfam PF05772 NinB protein 3 132 1.5E-48 T 11-10-2018 IPR008711 Recombinase NinB BED32_06625 b711985749d8d4f7d8bab428b8fcd9dc 156 SUPERFAMILY SSF103370 1 145 2.62E-43 T 11-10-2018 IPR036619 NinB superfamily BED32_06625 b711985749d8d4f7d8bab428b8fcd9dc 156 Gene3D G3DSA:1.10.3790.10 1 149 6.3E-52 T 11-10-2018 IPR036619 NinB superfamily BED32_06625 b711985749d8d4f7d8bab428b8fcd9dc 156 Pfam PF05772 NinB protein 3 132 1.5E-48 T 11-10-2018 IPR008711 Recombinase NinB BED32_03145 2b3431c45cc0bb82138c7781a84b619d 180 SUPERFAMILY SSF49401 27 180 4.23E-23 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_03145 2b3431c45cc0bb82138c7781a84b619d 180 Gene3D G3DSA:2.60.40.1090 27 179 4.1E-27 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_03145 2b3431c45cc0bb82138c7781a84b619d 180 Pfam PF16970 Type-1 fimbrial protein, A 54 180 6.3E-15 T 11-10-2018 IPR039458 Type-1 fimbrial protein, A BED32_11050 9455c0699451937b1f0303f6dbab3cc2 296 Gene3D G3DSA:1.10.3720.10 85 293 1.1E-16 T 11-10-2018 IPR035906 MetI-like superfamily BED32_11050 9455c0699451937b1f0303f6dbab3cc2 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 66 2.7E-6 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BED32_11050 9455c0699451937b1f0303f6dbab3cc2 296 SUPERFAMILY SSF161098 90 277 4.06E-21 T 11-10-2018 IPR035906 MetI-like superfamily BED32_11050 9455c0699451937b1f0303f6dbab3cc2 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 295 5.0E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 Pfam PF04055 Radical SAM superfamily 18 178 7.1E-29 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 SMART SM00729 13 217 2.3E-4 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 Gene3D G3DSA:3.20.20.70 1 326 3.0E-83 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 326 5.2E-106 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 Pfam PF06463 Molybdenum Cofactor Synthesis C 183 309 3.6E-40 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 4 326 38.561 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 SUPERFAMILY SSF102114 4 275 7.59E-71 T 11-10-2018 BED32_08015 5b4829c19f2c8c3ed9b75edb0f180e0d 326 Pfam PF13353 4Fe-4S single cluster domain 22 122 3.5E-6 T 11-10-2018 BED32_10590 611b734f5f4f0c4f8fe3045f288c7697 296 Gene3D G3DSA:3.40.50.300 10 250 2.4E-58 T 11-10-2018 BED32_10590 611b734f5f4f0c4f8fe3045f288c7697 296 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_10590 611b734f5f4f0c4f8fe3045f288c7697 296 SUPERFAMILY SSF52540 7 238 4.12E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10590 611b734f5f4f0c4f8fe3045f288c7697 296 Pfam PF00005 ABC transporter 29 174 2.0E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_10590 611b734f5f4f0c4f8fe3045f288c7697 296 SMART SM00382 36 222 9.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20705 894f79de5b52c02d6f26c8bc415d73dd 75 SUPERFAMILY SSF89447 3 68 2.54E-10 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily BED32_20705 894f79de5b52c02d6f26c8bc415d73dd 75 SMART SM00966 7 48 2.6E-4 T 11-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BED32_20705 894f79de5b52c02d6f26c8bc415d73dd 75 Gene3D G3DSA:2.10.260.10 1 74 9.0E-17 T 11-10-2018 BED32_20705 894f79de5b52c02d6f26c8bc415d73dd 75 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 7 50 8.7E-9 T 11-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 221 243 - T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 Gene3D G3DSA:3.30.1240.10 84 196 3.5E-60 T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 Gene3D G3DSA:3.40.50.1000 4 267 3.5E-60 T 11-10-2018 IPR023214 HAD superfamily BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 SUPERFAMILY SSF56784 1 271 2.41E-65 T 11-10-2018 IPR036412 HAD-like superfamily BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 240 2.1E-22 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 267 4.7E-61 T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 244 256 7.4E-6 T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 221 240 7.4E-6 T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 7 21 7.4E-6 T 11-10-2018 BED32_07960 129c881a4f7ab74f0b678cbbd319ac4c 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 267 5.3E-65 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Gene3D G3DSA:3.40.50.670 391 624 6.2E-95 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Pfam PF01751 Toprim domain 414 523 2.8E-12 T 11-10-2018 IPR006171 TOPRIM domain BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 SUPERFAMILY SSF55874 6 216 1.72E-69 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 557 621 5.0E-24 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 538 560 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 8.2E-154 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 626 0.0 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Pfam PF00204 DNA gyrase B 219 385 1.3E-39 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 SMART SM00387 28 174 1.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 SUPERFAMILY SSF54211 218 383 3.79E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 629 47.09 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 SUPERFAMILY SSF56719 389 622 7.85E-78 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Gene3D G3DSA:3.30.565.10 4 216 7.1E-76 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 110 124 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 67 80 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 267 280 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 480 496 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 32 47 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 518 530 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 498 515 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 561 577 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 PRINTS PR00418 DNA topoisomerase II family signature 415 429 6.8E-59 T 11-10-2018 BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 171 1.7E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 Gene3D G3DSA:3.30.230.10 217 390 1.0E-58 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_03520 ca019015d0ef655803b66dcc5ca00609 631 SMART SM00433 35 625 1.5E-211 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 38 161 4.9E-40 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 115 132 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 PRINTS PR00969 Pili chaperone signature 87 108 9.3E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 PRINTS PR00969 Pili chaperone signature 143 158 9.3E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 PRINTS PR00969 Pili chaperone signature 116 133 9.3E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 PRINTS PR00969 Pili chaperone signature 38 47 9.3E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 PRINTS PR00969 Pili chaperone signature 182 197 9.3E-29 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 SUPERFAMILY SSF49584 155 247 1.83E-16 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 187 245 8.9E-13 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 SUPERFAMILY SSF49354 32 161 9.94E-38 T 11-10-2018 IPR008962 PapD-like superfamily BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 Gene3D G3DSA:2.60.40.10 39 161 1.8E-37 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_00855 be524c81445577faa9fda9fb4306b6ea 252 Gene3D G3DSA:2.60.40.10 165 252 1.2E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 1 401 1.8E-152 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 Pfam PF13393 Histidyl-tRNA synthetase 1 302 4.3E-44 T 11-10-2018 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 SUPERFAMILY SSF55681 1 308 7.47E-104 T 11-10-2018 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 Pfam PF03129 Anticodon binding domain 321 408 4.8E-9 T 11-10-2018 IPR004154 Anticodon-binding BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 Gene3D G3DSA:3.40.50.800 317 412 1.7E-24 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 411 31.494 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 Gene3D G3DSA:3.30.930.10 1 312 7.2E-116 T 11-10-2018 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 SUPERFAMILY SSF52954 317 410 4.09E-23 T 11-10-2018 BED32_15980 95b7d08970b4262cc32a60b62b3f6461 414 PIRSF PIRSF001549 1 411 4.9E-123 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 BED32_08640 e77355f4c4ca0c4c68fa0ffc02de923a 259 Pfam PF01061 ABC-2 type transporter 18 220 8.8E-17 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.989 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 Pfam PF00216 Bacterial DNA-binding protein 1 91 6.6E-29 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.2E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 1.9E-50 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 SMART SM00411 1 91 1.5E-40 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 Gene3D G3DSA:4.10.520.10 40 94 1.3E-32 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 Gene3D G3DSA:4.10.520.10 2 39 8.0E-16 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_13655 5df1095b805aa14febf0fdd98e2f8904 94 SUPERFAMILY SSF47729 1 91 4.12E-29 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 SUPERFAMILY SSF47203 360 507 6.44E-20 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 151 233 6.7E-16 T 11-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Pfam PF09317 Domain of unknown function (DUF1974) 514 792 1.8E-116 T 11-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Gene3D G3DSA:1.20.140.10 360 507 1.9E-99 T 11-10-2018 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 237 328 9.0E-9 T 11-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Gene3D G3DSA:1.10.540.10 122 235 1.9E-99 T 11-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 360 507 2.5E-10 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 SUPERFAMILY SSF56645 119 355 4.84E-45 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BED32_05640 070694aefb04d3d48f86761bda28d2bd 815 Gene3D G3DSA:2.40.110.10 236 359 1.9E-99 T 11-10-2018 BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 Pfam PF00271 Helicase conserved C-terminal domain 522 589 2.0E-5 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 Gene3D G3DSA:1.10.8.630 2 113 1.1E-35 T 11-10-2018 BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 TIGRFAM TIGR00595 priA: primosomal protein N' 221 730 8.1E-205 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 SUPERFAMILY SSF52540 220 601 4.94E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 Hamap MF_00983 Probable primosomal protein N' [priA]. 6 732 25.52 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 Pfam PF00270 DEAD/DEAH box helicase 219 364 7.9E-14 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 SMART SM00487 195 391 5.2E-17 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 SMART SM00490 492 589 1.1E-7 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_00575 f0cf02fde0fcd9b4a5d3c41d3c5ef427 732 Gene3D G3DSA:3.40.50.300 184 379 6.0E-82 T 11-10-2018 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 SUPERFAMILY SSF52540 2 215 1.73E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 SUPERFAMILY SSF54980 298 383 1.08E-15 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Gene3D G3DSA:3.40.50.300 1 194 8.7E-68 T 11-10-2018 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 SUPERFAMILY SSF54980 394 508 5.76E-26 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Gene3D G3DSA:2.40.30.10 195 295 1.9E-36 T 11-10-2018 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 130 2.2E-25 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Pfam PF03144 Elongation factor Tu domain 2 215 285 1.1E-12 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Gene3D G3DSA:3.30.70.240 385 478 1.9E-128 T 11-10-2018 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Pfam PF00679 Elongation factor G C-terminus 393 472 5.6E-21 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 1 595 2.9E-290 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Gene3D G3DSA:3.30.70.870 302 586 1.9E-128 T 11-10-2018 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Pfam PF00009 Elongation factor Tu GTP binding domain 2 190 1.2E-56 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 PRINTS PR00315 GTP-binding elongation factor signature 47 55 9.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 PRINTS PR00315 GTP-binding elongation factor signature 119 128 9.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 PRINTS PR00315 GTP-binding elongation factor signature 67 77 9.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 PRINTS PR00315 GTP-binding elongation factor signature 83 94 9.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 PRINTS PR00315 GTP-binding elongation factor signature 3 16 9.3E-15 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 SUPERFAMILY SSF50447 147 295 9.06E-34 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 40 55 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_21245 777df3c223b08cd0b2d97a55380b44ca 603 Gene3D G3DSA:2.40.50.250 479 595 1.9E-128 T 11-10-2018 BED32_07330 04d16e84a255245940c415d5be58bfab 590 SMART SM00382 371 557 9.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_07330 04d16e84a255245940c415d5be58bfab 590 Pfam PF00664 ABC transporter transmembrane region 26 300 5.5E-35 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_07330 04d16e84a255245940c415d5be58bfab 590 Gene3D G3DSA:3.40.50.300 337 589 1.7E-95 T 11-10-2018 BED32_07330 04d16e84a255245940c415d5be58bfab 590 Gene3D G3DSA:1.20.1560.10 13 336 7.2E-110 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_07330 04d16e84a255245940c415d5be58bfab 590 ProSitePatterns PS00211 ABC transporters family signature. 483 497 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_07330 04d16e84a255245940c415d5be58bfab 590 SUPERFAMILY SSF52540 335 582 1.67E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07330 04d16e84a255245940c415d5be58bfab 590 SUPERFAMILY SSF90123 10 324 1.7E-56 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_07330 04d16e84a255245940c415d5be58bfab 590 Pfam PF00005 ABC transporter 362 511 2.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 SUPERFAMILY SSF52540 368 560 2.4E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 SMART SM00382 385 561 8.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 Pfam PF06472 ABC transporter transmembrane region 2 3 290 4.5E-47 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 SUPERFAMILY SSF90123 23 347 7.06E-20 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 Gene3D G3DSA:3.40.50.300 365 566 7.1E-41 T 11-10-2018 BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 Pfam PF00005 ABC transporter 376 509 1.5E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_19495 c2e478cd7432174ea01efd3db66e84e7 568 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20195 ad47070195c65408f701386c7e9a785e 507 SMART SM00382 302 493 7.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20195 ad47070195c65408f701386c7e9a785e 507 Gene3D G3DSA:1.20.120.140 206 502 8.4E-117 T 11-10-2018 BED32_20195 ad47070195c65408f701386c7e9a785e 507 SUPERFAMILY SSF47364 204 283 2.75E-22 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 BED32_20195 ad47070195c65408f701386c7e9a785e 507 Gene3D G3DSA:3.40.50.300 301 492 8.4E-117 T 11-10-2018 BED32_20195 ad47070195c65408f701386c7e9a785e 507 Pfam PF00448 SRP54-type protein, GTPase domain 303 503 4.3E-77 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_20195 ad47070195c65408f701386c7e9a785e 507 SUPERFAMILY SSF52540 300 503 1.43E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20195 ad47070195c65408f701386c7e9a785e 507 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 477 490 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_20195 ad47070195c65408f701386c7e9a785e 507 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 232 504 65.497 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BED32_20195 ad47070195c65408f701386c7e9a785e 507 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 232 503 5.9E-115 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 BED32_20195 ad47070195c65408f701386c7e9a785e 507 SMART SM00962 303 504 1.6E-122 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_20195 ad47070195c65408f701386c7e9a785e 507 SMART SM00963 209 289 4.2E-25 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_20195 ad47070195c65408f701386c7e9a785e 507 Pfam PF02881 SRP54-type protein, helical bundle domain 220 285 5.6E-13 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_14255 5f76dbc88407244ba179c06a50161b29 400 Pfam PF00872 Transposase, Mutator family 10 373 2.5E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 SUPERFAMILY SSF46604 90 138 2.88E-15 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 21.264 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 90 134 8.3E-13 T 11-10-2018 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 7 85 1.7E-28 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 Gene3D G3DSA:1.20.5.440 92 135 6.7E-20 T 11-10-2018 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 SUPERFAMILY SSF51344 4 87 6.93E-24 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 88 1.0E-38 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 2.1E-45 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21470 a5a679f97ffa865f540d07694c565ae2 140 Gene3D G3DSA:2.60.15.10 4 91 1.2E-31 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_10155 0283bc13820b4f482be825df47f41238 271 Pfam PF01904 Protein of unknown function DUF72 20 248 6.9E-51 T 11-10-2018 IPR002763 Protein of unknown function DUF72 BED32_10155 0283bc13820b4f482be825df47f41238 271 SUPERFAMILY SSF117396 1 251 1.07E-64 T 11-10-2018 IPR036520 UPF0759 superfamily BED32_10155 0283bc13820b4f482be825df47f41238 271 Gene3D G3DSA:3.20.20.410 1 254 1.9E-41 T 11-10-2018 IPR036520 UPF0759 superfamily BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 SUPERFAMILY SSF158472 173 221 5.1E-8 T 11-10-2018 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Gene3D G3DSA:3.30.565.10 456 590 1.9E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Pfam PF00672 HAMP domain 173 221 2.3E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Gene3D G3DSA:1.10.287.130 171 266 6.1E-7 T 11-10-2018 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 SMART SM00304 173 226 2.5E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Gene3D G3DSA:1.20.120.960 39 145 1.3E-39 T 11-10-2018 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 PIRSF PIRSF003167 1 593 6.4E-196 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 SMART SM00387 496 589 6.7E-4 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 SUPERFAMILY SSF55874 463 585 1.57E-14 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Pfam PF07730 Histidine kinase 392 455 2.9E-17 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 32 127 2.5E-7 T 11-10-2018 IPR029095 NarX-like, N-terminal BED32_09945 21d9a18ffaa43f0bc8610b92717eb9de 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 500 585 1.4E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_14090 84677212cdd7609b0c35ce214fa67538 312 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 5 308 5.8E-100 T 11-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 BED32_14090 84677212cdd7609b0c35ce214fa67538 312 Gene3D G3DSA:3.40.1190.20 2 310 1.8E-90 T 11-10-2018 IPR029056 Ribokinase-like BED32_14090 84677212cdd7609b0c35ce214fa67538 312 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 5 308 2.8E-98 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BED32_14090 84677212cdd7609b0c35ce214fa67538 312 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_14090 84677212cdd7609b0c35ce214fa67538 312 PIRSF PIRSF000535 2 311 1.3E-114 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 BED32_14090 84677212cdd7609b0c35ce214fa67538 312 Pfam PF00294 pfkB family carbohydrate kinase 14 293 2.5E-62 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_14090 84677212cdd7609b0c35ce214fa67538 312 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 249 262 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_14090 84677212cdd7609b0c35ce214fa67538 312 SUPERFAMILY SSF53613 7 306 3.74E-66 T 11-10-2018 IPR029056 Ribokinase-like BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 SUPERFAMILY SSF118215 6 403 2.48E-108 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 Gene3D G3DSA:1.10.3860.10 1 411 3.4E-115 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 356 376 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 50 70 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 4 24 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 80 105 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 1.4E-40 T 11-10-2018 BED32_01235 0baca6fbba30da83e9302e7e30ad7ee7 441 Pfam PF00375 Sodium:dicarboxylate symporter family 6 402 1.7E-105 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BED32_20455 1007c70bdd178259ffcdeeacbf1256c5 291 Pfam PF00483 Nucleotidyl transferase 2 238 1.1E-68 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_20455 1007c70bdd178259ffcdeeacbf1256c5 291 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 286 8.5E-158 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 BED32_20455 1007c70bdd178259ffcdeeacbf1256c5 291 SUPERFAMILY SSF53448 1 286 4.28E-92 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_20455 1007c70bdd178259ffcdeeacbf1256c5 291 Gene3D G3DSA:3.90.550.10 1 291 1.6E-84 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 SUPERFAMILY SSF110738 1 375 2.62E-141 T 11-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 1.2E-165 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 Gene3D G3DSA:3.90.1510.10 42 276 3.4E-143 T 11-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 Gene3D G3DSA:3.40.50.10350 2 359 3.4E-143 T 11-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 Pfam PF02595 Glycerate kinase family 3 373 1.1E-148 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BED32_19380 7f51c091080e95ee0f533e0fbc93da50 387 PIRSF PIRSF006078 1 377 1.1E-140 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 Pfam PF01048 Phosphorylase superfamily 15 218 1.4E-41 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 52.738 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 SUPERFAMILY SSF53167 3 234 7.72E-95 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 Gene3D G3DSA:3.40.50.1580 1 238 6.5E-78 T 11-10-2018 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 2.5E-124 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 BED32_18335 2bcc1c11abc0deffe9c935c8acaf48c5 239 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_06230 2e7d54a35f51a86592662d695adfa388 421 Gene3D G3DSA:3.40.720.10 3 413 1.6E-87 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_06230 2e7d54a35f51a86592662d695adfa388 421 Pfam PF01676 Metalloenzyme superfamily 3 402 2.0E-38 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 BED32_06230 2e7d54a35f51a86592662d695adfa388 421 PIRSF PIRSF001491 1 417 9.0E-102 T 11-10-2018 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_06230 2e7d54a35f51a86592662d695adfa388 421 Gene3D G3DSA:3.30.70.1250 103 233 1.6E-87 T 11-10-2018 IPR024052 Phosphopentomutase DeoB cap domain superfamily GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 BED32_06230 2e7d54a35f51a86592662d695adfa388 421 SUPERFAMILY SSF53649 2 416 3.14E-48 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Gene3D G3DSA:3.40.120.10 175 362 3.9E-65 T 11-10-2018 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 445 47.618 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Gene3D G3DSA:3.40.120.10 3 154 3.9E-48 T 11-10-2018 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Gene3D G3DSA:3.40.120.10 257 339 3.9E-65 T 11-10-2018 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 SUPERFAMILY SSF53738 156 256 1.73E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Gene3D G3DSA:3.30.310.50 370 446 1.5E-24 T 11-10-2018 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 SUPERFAMILY SSF55957 357 444 7.19E-21 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 443 2.5E-194 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 5.2E-45 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 364 3.6E-32 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 SUPERFAMILY SSF53738 258 365 5.49E-31 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 2.2E-20 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 5.7E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 5.7E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 5.7E-15 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 442 2.3E-13 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_18955 60bcdf47729926e4aa60afb2e824bc1b 446 SUPERFAMILY SSF53738 2 181 4.32E-49 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_08465 12bf509b9d552c321698b12500c608a3 180 SUPERFAMILY SSF54862 1 169 1.93E-42 T 11-10-2018 BED32_08465 12bf509b9d552c321698b12500c608a3 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 88 99 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_08465 12bf509b9d552c321698b12500c608a3 180 Pfam PF12800 4Fe-4S binding domain 9 22 0.16 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_08465 12bf509b9d552c321698b12500c608a3 180 Gene3D G3DSA:3.30.70.20 5 165 4.9E-29 T 11-10-2018 BED32_08465 12bf509b9d552c321698b12500c608a3 180 Gene3D G3DSA:3.30.70.20 63 129 4.9E-29 T 11-10-2018 BED32_08465 12bf509b9d552c321698b12500c608a3 180 Pfam PF00037 4Fe-4S binding domain 82 103 3.6E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 1.5E-28 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 SUPERFAMILY SSF53671 3 306 1.9E-99 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 Gene3D G3DSA:3.40.50.1370 135 292 1.7E-122 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 3.1E-119 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.199 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 Gene3D G3DSA:3.40.50.1370 8 304 1.7E-122 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 4.6E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 4.6E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 4.6E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 4.6E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.8E-45 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_02900 0940c41a441b5aad7e44d7092db6a24b 311 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 3.6E-36 T 11-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 Gene3D G3DSA:3.40.50.720 2 245 4.8E-77 T 11-10-2018 BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 245 2.1E-60 T 11-10-2018 BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.5E-38 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.5E-11 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 0.0043 T 11-10-2018 BED32_11305 3f14021eb6f9ad611eef659144dc2b5a 246 SUPERFAMILY SSF51735 7 245 3.1E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 247 256 2.9E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 183 195 2.9E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 358 366 2.9E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00410 Phenol hydroxylase reductase family signature 263 282 2.9E-6 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Gene3D G3DSA:2.40.30.10 149 254 1.1E-32 T 11-10-2018 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Gene3D G3DSA:1.10.490.10 1 142 1.4E-49 T 11-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Pfam PF00042 Globin 7 102 3.1E-13 T 11-10-2018 IPR000971 Globin GO:0020037 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 SUPERFAMILY SSF52343 255 395 2.36E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 SUPERFAMILY SSF46458 1 142 7.32E-38 T 11-10-2018 IPR009050 Globin-like superfamily BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 183 193 6.4E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 263 282 6.4E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 366 6.4E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 204 211 6.4E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Hamap MF_01252 Flavohemoprotein [hmp]. 1 396 56.852 T 11-10-2018 IPR023950 Flavohemoprotein GO:0008941|GO:0019825|GO:0020037|GO:0051409|GO:0055114|GO:0071949 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 SUPERFAMILY SSF63380 148 253 8.85E-29 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Pfam PF00970 Oxidoreductase FAD-binding domain 156 252 1.9E-9 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Pfam PF00175 Oxidoreductase NAD-binding domain 264 371 2.1E-14 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_16115 e66a7152f76a5f7cb39e6017afec36ec 396 Gene3D G3DSA:3.40.50.80 256 396 1.3E-32 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 PIRSF PIRSF000018 1 422 1.1E-154 T 11-10-2018 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 SUPERFAMILY SSF46626 170 287 1.37E-16 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 Gene3D G3DSA:1.10.760.10 168 284 1.5E-6 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 Gene3D G3DSA:1.10.760.10 299 422 4.3E-26 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 318 400 8.2E-9 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 SUPERFAMILY SSF46626 19 155 1.81E-23 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 Gene3D G3DSA:1.10.760.10 1 143 1.1E-11 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 Pfam PF00034 Cytochrome c 33 131 6.2E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_15910 60a97e9ef7a2a8748e9f8ba998c9e44f 422 SUPERFAMILY SSF46626 308 416 2.74E-21 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_04955 52243cd6dad5135a593f154e47d45788 93 Gene3D G3DSA:3.30.465.10 8 86 1.2E-25 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_04955 52243cd6dad5135a593f154e47d45788 93 SUPERFAMILY SSF56176 8 90 1.96E-20 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_04955 52243cd6dad5135a593f154e47d45788 93 SMART SM01091 10 87 9.2E-22 T 11-10-2018 IPR005170 Transporter-associated domain BED32_04955 52243cd6dad5135a593f154e47d45788 93 Pfam PF03471 Transporter associated domain 12 85 2.7E-18 T 11-10-2018 IPR005170 Transporter-associated domain BED32_12750 4cd111df2d7a2b712d3ec4bcbc0eb3c8 239 Gene3D G3DSA:3.60.140.10 20 219 8.3E-49 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily BED32_12750 4cd111df2d7a2b712d3ec4bcbc0eb3c8 239 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 38 193 1.1E-42 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BED32_12750 4cd111df2d7a2b712d3ec4bcbc0eb3c8 239 SUPERFAMILY SSF64438 23 194 8.61E-47 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BED32_12750 4cd111df2d7a2b712d3ec4bcbc0eb3c8 239 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 35 192 8.2E-45 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:1.10.460.10 171 577 8.5E-164 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:1.10.290.10 286 410 8.5E-164 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:2.20.25.10 814 871 2.4E-31 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SMART SM00436 139 227 3.4E-48 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SUPERFAMILY SSF57783 709 749 2.72E-7 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SUPERFAMILY SSF57783 815 870 5.95E-23 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 738 54.923 T 11-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:2.70.20.10 219 479 8.5E-164 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF01751 Toprim domain 5 148 7.9E-33 T 11-10-2018 IPR006171 TOPRIM domain BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 3.5E-256 T 11-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SMART SM00437 278 533 4.3E-120 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 628 7.6E-6 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 750 1.1E-11 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 764 799 2.1E-12 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF08272 Topoisomerase I zinc-ribbon-like 830 869 3.3E-23 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SMART SM00493 3 138 1.6E-33 T 11-10-2018 IPR006171 TOPRIM domain BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:3.40.50.140 1 169 2.2E-67 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SUPERFAMILY SSF57783 751 813 5.78E-19 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:3.30.65.10 706 750 5.9E-6 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Gene3D G3DSA:3.30.65.10 751 813 3.3E-31 T 11-10-2018 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 6.1E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 6.1E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 496 510 6.1E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 6.1E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 6.1E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 Pfam PF01131 DNA topoisomerase 163 571 4.9E-127 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_11945 7c25e0dce4267bdc9d0a4e310175d027 871 SUPERFAMILY SSF56712 3 615 5.76E-202 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 TIGRFAM TIGR00417 speE: spermidine synthase 7 278 1.8E-117 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 SUPERFAMILY SSF53335 6 283 1.6E-88 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 Pfam PF17284 Spermidine synthase tetramerisation domain 6 57 6.2E-18 T 11-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 Pfam PF01564 Spermine/spermidine synthase domain 60 241 3.2E-67 T 11-10-2018 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 6 284 39.384 T 11-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 Gene3D G3DSA:3.40.50.150 55 286 8.8E-82 T 11-10-2018 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 Gene3D G3DSA:2.30.140.10 1 54 1.4E-26 T 11-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BED32_17710 01c5de95fec6f1c9d069512fc98446f5 287 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 81 94 - T 11-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 BED32_00400 389ae0b3f4c23abf3304fbe47eef2f9c 550 TIGRFAM TIGR02514 type_III_yscP: type III secretion system needle length determinant 426 550 3.5E-42 T 11-10-2018 IPR013354 Type III secretion system needle length determinant, C-terminal domain GO:0009405 BED32_00400 389ae0b3f4c23abf3304fbe47eef2f9c 550 Pfam PF02120 Flagellar hook-length control protein FliK 463 534 3.1E-8 T 11-10-2018 IPR021136 Flagellar hook-length control protein-like, C-terminal BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 SUPERFAMILY SSF53335 9 365 5.19E-52 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 299 328 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 366 42.98 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 366 4.9E-194 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 348 358 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 Gene3D G3DSA:3.40.1350.30 45 189 7.2E-145 T 11-10-2018 BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 366 2.6E-189 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 BED32_00705 0c617c0a1b7e7c0fbae96522cb10efaa 367 Gene3D G3DSA:3.40.50.150 14 362 7.2E-145 T 11-10-2018 BED32_14620 6ee6cd4416eef94d924e0c29f6c733e6 404 Pfam PF00155 Aminotransferase class I and II 58 392 6.1E-46 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_14620 6ee6cd4416eef94d924e0c29f6c733e6 404 SUPERFAMILY SSF53383 7 401 1.06E-94 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_14620 6ee6cd4416eef94d924e0c29f6c733e6 404 Gene3D G3DSA:3.40.640.10 53 294 4.1E-147 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_14620 6ee6cd4416eef94d924e0c29f6c733e6 404 Gene3D G3DSA:3.90.1150.10 21 398 4.1E-147 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_00175 dff1fc9c69f7a76ed812d7587e229206 141 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 116 1.6E-39 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 BED32_00175 dff1fc9c69f7a76ed812d7587e229206 141 Pfam PF03960 ArsC family 7 114 1.5E-18 T 11-10-2018 IPR006660 Arsenate reductase-like BED32_00175 dff1fc9c69f7a76ed812d7587e229206 141 Gene3D G3DSA:3.40.30.10 1 141 5.2E-60 T 11-10-2018 BED32_00175 dff1fc9c69f7a76ed812d7587e229206 141 SUPERFAMILY SSF52833 3 137 3.79E-38 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_08645 82715b02d8a4ae2373554d9d75c49b3e 239 SMART SM00382 58 228 4.1E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08645 82715b02d8a4ae2373554d9d75c49b3e 239 Gene3D G3DSA:3.40.50.300 22 237 2.4E-38 T 11-10-2018 BED32_08645 82715b02d8a4ae2373554d9d75c49b3e 239 SUPERFAMILY SSF52540 46 233 7.73E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08645 82715b02d8a4ae2373554d9d75c49b3e 239 Pfam PF00005 ABC transporter 49 180 4.0E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02330 1a5692c59452471b2645ac014be21d31 308 Gene3D G3DSA:1.10.10.10 1 91 6.1E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02330 1a5692c59452471b2645ac014be21d31 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02330 1a5692c59452471b2645ac014be21d31 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02330 1a5692c59452471b2645ac014be21d31 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 6.8E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02330 1a5692c59452471b2645ac014be21d31 308 SUPERFAMILY SSF53850 90 292 1.03E-40 T 11-10-2018 BED32_02330 1a5692c59452471b2645ac014be21d31 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 6.1E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02330 1a5692c59452471b2645ac014be21d31 308 SUPERFAMILY SSF46785 1 86 2.82E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_02330 1a5692c59452471b2645ac014be21d31 308 Gene3D G3DSA:3.40.190.290 92 291 3.8E-48 T 11-10-2018 BED32_02330 1a5692c59452471b2645ac014be21d31 308 Pfam PF03466 LysR substrate binding domain 89 289 1.1E-41 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_06200 1e841996af46156b77c54fb9677a5116 285 SUPERFAMILY SSF81345 12 270 1.24E-21 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_06200 1e841996af46156b77c54fb9677a5116 285 Pfam PF00950 ABC 3 transport family 14 273 1.5E-51 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 SUPERFAMILY SSF118215 9 401 3.4E-122 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 327 346 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 7 27 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 145 167 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 292 318 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 PRINTS PR00173 Glutamate-aspartate symporter signature 192 211 7.1E-30 T 11-10-2018 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 428 38.884 T 11-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 Gene3D G3DSA:1.10.3860.10 1 418 3.3E-120 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 295 318 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 Pfam PF00375 Sodium:dicarboxylate symporter family 9 401 8.6E-112 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BED32_01075 28938dd44199e4421da5d5dc5d5d185d 430 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 11-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 31.166 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 SUPERFAMILY SSF52972 2 184 9.81E-59 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 PIRSF PIRSF006305 1 191 2.5E-50 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 Pfam PF02545 Maf-like protein 4 184 9.1E-57 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 Gene3D G3DSA:3.90.950.10 2 190 7.2E-73 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_02480 72682931b6d373cbc6909cfdcb638e75 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 182 3.8E-63 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 Gene3D G3DSA:3.40.1080.10 236 505 1.1E-122 T 11-10-2018 BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 21 505 1.3E-239 T 11-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 SUPERFAMILY SSF100950 20 233 4.51E-73 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 40 503 4.8E-255 T 11-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 PIRSF PIRSF009451 1 505 9.2E-258 T 11-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 SUPERFAMILY SSF100950 237 503 5.16E-63 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_09250 5d9a64e3b2c07fdaabc2a5e16f1c7d6e 505 Gene3D G3DSA:3.40.1080.10 2 234 3.0E-94 T 11-10-2018 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 Gene3D G3DSA:3.40.50.2300 1 126 7.6E-32 T 11-10-2018 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 Pfam PF00072 Response regulator receiver domain 4 111 9.3E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 SUPERFAMILY SSF52172 1 127 2.99E-32 T 11-10-2018 IPR011006 CheY-like superfamily BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 SMART SM00448 2 112 2.4E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 Gene3D G3DSA:2.40.50.1020 132 237 2.3E-11 T 11-10-2018 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 SMART SM00850 142 236 6.6E-24 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BED32_05010 e3ac0e3486721d84ea8b666058f0b306 238 Pfam PF04397 LytTr DNA-binding domain 143 235 3.2E-24 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 Pfam PF00267 Gram-negative porin 28 360 2.3E-129 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 Gene3D G3DSA:2.40.160.10 23 360 1.9E-136 T 11-10-2018 IPR023614 Porin domain superfamily BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 SUPERFAMILY SSF56935 23 360 1.33E-73 T 11-10-2018 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 150 172 6.3E-54 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 6.3E-54 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 243 260 6.3E-54 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 271 290 6.3E-54 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 6.3E-54 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 152 163 1.1E-13 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 315 332 1.1E-13 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 51 62 1.1E-13 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 237 249 1.1E-13 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_09995 73bc44f0ff2d58f758c8c723fa85bbcd 360 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 1.1E-13 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 180 1.1E-70 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00738 6 115 2.0E-50 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF02357 Transcription termination factor nusG 7 112 2.1E-27 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 24.616 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:3.30.70.940 1 121 6.5E-48 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Gene3D G3DSA:2.30.30.30 122 180 2.3E-26 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 Pfam PF00467 KOW motif 130 162 9.5E-8 T 11-10-2018 IPR005824 KOW BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF50104 125 180 1.15E-19 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SMART SM00739 127 154 2.0E-6 T 11-10-2018 IPR005824 KOW BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 SUPERFAMILY SSF82679 6 116 3.4E-40 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 1.9E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.9E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BED32_19860 3f0db8b79c3aa21e2123b26b5ffd87e7 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.9E-21 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 SMART SM01002 146 311 5.8E-86 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 PIRSF PIRSF000203 1 507 2.0E-279 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 2.1E-75 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 Gene3D G3DSA:3.40.50.720 137 318 2.4E-164 T 11-10-2018 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 11-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 8.3E-53 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 425 507 5.3E-36 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 2 508 6.0E-294 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 SMART SM01003 4 137 1.7E-77 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 SUPERFAMILY SSF52283 1 168 4.42E-58 T 11-10-2018 BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 SUPERFAMILY SSF51735 137 317 1.09E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_11265 2b3204a804cabce3f7a1bf36d26c1470 508 Gene3D G3DSA:3.40.50.720 3 365 2.4E-164 T 11-10-2018 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 Gene3D G3DSA:3.30.420.40 7 259 4.4E-117 T 11-10-2018 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 Gene3D G3DSA:3.30.420.40 260 506 1.8E-96 T 11-10-2018 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 PIRSF PIRSF000538 9 507 4.3E-181 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 Hamap MF_00186 Glycerol kinase [glpK]. 9 503 60.127 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 SUPERFAMILY SSF53067 261 503 7.03E-87 T 11-10-2018 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 368 388 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 SUPERFAMILY SSF53067 10 261 8.64E-97 T 11-10-2018 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 10 502 4.5E-231 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 11 258 2.4E-92 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 267 456 2.6E-63 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BED32_00525 58a9f8ef1066d3cb3bbb8929a5e38b1d 507 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 141 153 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Gene3D G3DSA:3.40.50.720 209 373 4.3E-174 T 11-10-2018 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Gene3D G3DSA:1.10.285.10 14 374 4.3E-174 T 11-10-2018 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 SUPERFAMILY SSF53223 6 196 8.32E-74 T 11-10-2018 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 202 445 8.6E-85 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 235 255 3.5E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 3.5E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 372 383 3.5E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 193 215 3.5E-33 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Gene3D G3DSA:3.40.50.10860 55 190 4.3E-174 T 11-10-2018 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 SMART SM00839 204 445 4.3E-90 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 PIRSF PIRSF000185 22 447 2.0E-113 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 1.7E-50 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 SUPERFAMILY SSF51735 202 446 1.54E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01145 da2e048c0ebcd2de3ad194d5355c6c43 447 Gene3D G3DSA:1.10.285.10 401 447 3.9E-10 T 11-10-2018 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 PIRSF PIRSF000102 1 310 1.2E-59 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 1.9E-50 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 SUPERFAMILY SSF51735 1 145 1.73E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 Gene3D G3DSA:3.40.50.720 1 146 5.2E-64 T 11-10-2018 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.6E-45 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 5.8E-136 T 11-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 SUPERFAMILY SSF56327 146 310 2.78E-41 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 Gene3D G3DSA:3.90.110.10 147 311 1.8E-54 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 11-10-2018 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 BED32_19035 e46a356fa878998da1b74e2bcad66d82 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 59.495 T 11-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 BED32_10220 596d85c6819d879bfb44b25697725b41 321 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 306 1.1E-93 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_10220 596d85c6819d879bfb44b25697725b41 321 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 311 53.306 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 BED32_10220 596d85c6819d879bfb44b25697725b41 321 PIRSF PIRSF026649 11 315 2.5E-91 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_10220 596d85c6819d879bfb44b25697725b41 321 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 315 2.7E-131 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 Pfam PF01264 Chorismate synthase 10 345 4.3E-144 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.1E-141 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 SUPERFAMILY SSF103263 4 351 2.22E-149 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 Gene3D G3DSA:3.60.150.10 1 361 1.3E-160 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 PIRSF PIRSF001456 3 359 2.5E-143 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_14910 228c5eae06f536f19e6aeac4df68164b 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 354 37.971 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 BED32_16860 5535c7f486afb720b2983a96e79e4ebc 282 Pfam PF01148 Cytidylyltransferase family 4 279 1.3E-68 T 11-10-2018 BED32_16860 5535c7f486afb720b2983a96e79e4ebc 282 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 239 265 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 BED32_13280 c5426077a1eec56bc2a62caaa77d88b0 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4 305 1.1E-144 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BED32_13280 c5426077a1eec56bc2a62caaa77d88b0 306 PIRSF PIRSF026649 1 305 4.7E-99 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_13280 c5426077a1eec56bc2a62caaa77d88b0 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 295 2.0E-103 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_13280 c5426077a1eec56bc2a62caaa77d88b0 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 305 52.73 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 SUPERFAMILY SSF50447 205 301 4.71E-31 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 4.1E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Gene3D G3DSA:3.40.50.300 1 203 1.3E-69 T 11-10-2018 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 1.7E-33 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal BED32_19870 dccd70da4f311673ad96ca95f945a934 394 SUPERFAMILY SSF50465 298 393 2.42E-35 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 1.4E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 7.6E-238 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 145 3.4E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 SUPERFAMILY SSF52540 6 219 1.69E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Gene3D G3DSA:2.40.30.10 206 334 1.7E-53 T 11-10-2018 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Gene3D G3DSA:2.40.30.10 338 393 1.9E-28 T 11-10-2018 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.074 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.0E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_19870 dccd70da4f311673ad96ca95f945a934 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 171 29.478 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 SUPERFAMILY SSF52540 4 170 7.83E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 Gene3D G3DSA:3.40.50.300 1 173 1.7E-58 T 11-10-2018 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 Pfam PF01202 Shikimate kinase 13 170 7.5E-57 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 59 67 4.3E-29 T 11-10-2018 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 31 44 4.3E-29 T 11-10-2018 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 98 115 4.3E-29 T 11-10-2018 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 7 22 4.3E-29 T 11-10-2018 BED32_01620 223a54596d7bfdc0ef12acb32959857c 173 PRINTS PR01100 Shikimate kinase family signature 77 86 4.3E-29 T 11-10-2018 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 289 349 6.0E-16 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 350 9.0E-152 T 11-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 SUPERFAMILY SSF50331 235 350 5.29E-23 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 Gene3D G3DSA:2.40.50.100 289 350 1.5E-14 T 11-10-2018 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 SUPERFAMILY SSF52540 8 221 7.14E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 SMART SM00382 23 206 7.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 Pfam PF03459 TOBE domain 290 349 1.1E-16 T 11-10-2018 IPR005116 Transport-associated OB, type 1 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 Gene3D G3DSA:3.40.50.300 6 223 2.1E-53 T 11-10-2018 BED32_07955 d80ea0fef2db2cadf86ebd0583e95470 354 Pfam PF00005 ABC transporter 16 156 6.0E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 Gene3D G3DSA:3.30.54.10 174 306 5.9E-120 T 11-10-2018 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 Pfam PF05472 DNA replication terminus site-binding protein (Ter protein) 9 306 5.4E-139 T 11-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 Hamap MF_00483 DNA replication terminus site-binding protein [tus]. 1 309 44.87 T 11-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 Gene3D G3DSA:3.50.14.10 14 281 5.9E-120 T 11-10-2018 IPR036381 Replication terminator Tus, domain 1 GO:0003677|GO:0005737|GO:0006274 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 SUPERFAMILY SSF56596 5 308 1.57E-119 T 11-10-2018 IPR036384 Replication terminator Tus superfamily GO:0003677|GO:0005737|GO:0006274 BED32_11410 7ff176a2c333857cfd2500b8120c851c 309 TIGRFAM TIGR02648 rep_term_tus: DNA replication terminus site-binding protein 10 308 7.5E-162 T 11-10-2018 IPR008865 DNA replication terminus site-binding protein GO:0003677|GO:0005737|GO:0006274 BED32_01400 1f1a85cbaf2b7e99bfbaee03a68845f7 565 SUPERFAMILY SSF55781 236 357 5.4E-5 T 11-10-2018 BED32_01400 1f1a85cbaf2b7e99bfbaee03a68845f7 565 Pfam PF06580 Histidine kinase 373 450 2.7E-25 T 11-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 BED32_01400 1f1a85cbaf2b7e99bfbaee03a68845f7 565 SUPERFAMILY SSF55874 426 558 9.9E-12 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_01400 1f1a85cbaf2b7e99bfbaee03a68845f7 565 Gene3D G3DSA:3.30.565.10 425 559 4.4E-11 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_01400 1f1a85cbaf2b7e99bfbaee03a68845f7 565 Pfam PF07694 5TMR of 5TMR-LYT 30 198 3.4E-58 T 11-10-2018 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 BED32_04605 f87baa4c35b872d192bbdf9357bf63cf 105 Pfam PF12084 Protein of unknown function (DUF3561) 1 104 1.0E-45 T 11-10-2018 IPR022721 Protein of unknown function DUF3561 BED32_04605 f87baa4c35b872d192bbdf9357bf63cf 105 ProDom PD070788 MEMBRANE OXIDASE SUBUNIT CYTOCHROME YGBE INNER STY3057 TRANSMEMBRANE 18 105 1.0E-37 T 11-10-2018 IPR022721 Protein of unknown function DUF3561 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 Gene3D G3DSA:3.40.1050.10 1 219 2.0E-84 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 11-10-2018 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 Pfam PF00484 Carbonic anhydrase 38 189 6.4E-50 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 SUPERFAMILY SSF53056 1 213 2.09E-71 T 11-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 BED32_17690 2672c67c43e1f71ae99ded405d04507c 220 SMART SM00947 30 193 2.2E-66 T 11-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 BED32_03440 607e8e522de406e5fe5f04d43ba32b2e 206 Pfam PF08239 Bacterial SH3 domain 34 85 2.0E-8 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type BED32_03440 607e8e522de406e5fe5f04d43ba32b2e 206 Gene3D G3DSA:2.30.30.40 22 88 3.2E-7 T 11-10-2018 BED32_03440 607e8e522de406e5fe5f04d43ba32b2e 206 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 27 204 4.2E-53 T 11-10-2018 IPR016476 SH3 domain protein BED32_03440 607e8e522de406e5fe5f04d43ba32b2e 206 SMART SM00287 23 89 1.6E-9 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type BED32_03440 607e8e522de406e5fe5f04d43ba32b2e 206 PIRSF PIRSF006158 1 205 4.2E-70 T 11-10-2018 IPR016476 SH3 domain protein BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Gene3D G3DSA:1.10.3810.10 215 418 1.3E-264 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 SUPERFAMILY SSF56601 376 790 8.35E-105 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Gene3D G3DSA:1.20.5.100 69 110 3.2E-20 T 11-10-2018 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 PIRSF PIRSF002799 53 834 0.0 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 83 809 0.0 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Gene3D G3DSA:3.40.710.10 117 775 1.3E-264 T 11-10-2018 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 SUPERFAMILY SSF53955 211 416 9.56E-66 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Pfam PF00905 Penicillin binding protein transpeptidase domain 487 733 3.2E-21 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Pfam PF00912 Transglycosylase 223 394 9.5E-55 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Pfam PF14814 Bifunctional transglycosylase second domain 127 211 1.4E-28 T 11-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 SUPERFAMILY SSF52540 119 176 7.97E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Pfam PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal 1 93 6.9E-29 T 11-10-2018 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain BED32_17620 eed4873cb8a331c0ecf17b0bbbb3fd81 834 Gene3D G3DSA:3.30.2060.10 125 214 1.3E-264 T 11-10-2018 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 SUPERFAMILY SSF53041 3 144 3.92E-38 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 Pfam PF00239 Resolvase, N terminal domain 4 144 2.7E-37 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 Gene3D G3DSA:3.40.50.1390 4 134 4.6E-37 T 11-10-2018 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 Pfam PF02796 Helix-turn-helix domain of resolvase 147 190 1.3E-9 T 11-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 Gene3D G3DSA:1.10.10.60 150 192 6.0E-6 T 11-10-2018 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 SMART SM00857 4 145 2.7E-49 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 ProSitePatterns PS00398 Site-specific recombinases signature 2. 63 75 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 SUPERFAMILY SSF46689 147 188 1.25E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00180 2cbfb430f8238f16c336a11b0b43c463 193 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 Pfam PF02222 ATP-grasp domain 123 295 4.2E-55 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 SUPERFAMILY SSF52440 3 112 1.87E-35 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 Gene3D G3DSA:3.30.1490.20 123 196 1.2E-31 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 SUPERFAMILY SSF56059 113 314 2.47E-55 T 11-10-2018 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 391 51.253 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 Gene3D G3DSA:3.30.470.20 197 389 4.9E-58 T 11-10-2018 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 Gene3D G3DSA:3.40.50.20 2 122 9.8E-54 T 11-10-2018 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 390 1.7E-187 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 BED32_12665 4b5f3729d4476705c0fd694cc508c6a9 393 SUPERFAMILY SSF51246 319 390 5.65E-18 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BED32_02300 5a73f909967701a15f450f958a8b2098 182 SUPERFAMILY SSF50249 4 182 4.46E-61 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_02300 5a73f909967701a15f450f958a8b2098 182 Pfam PF00436 Single-strand binding protein family 6 112 2.8E-42 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 BED32_02300 5a73f909967701a15f450f958a8b2098 182 Gene3D G3DSA:2.40.50.140 2 147 7.5E-53 T 11-10-2018 BED32_02300 5a73f909967701a15f450f958a8b2098 182 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 182 7.1E-60 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BED32_02300 5a73f909967701a15f450f958a8b2098 182 Hamap MF_00984 Single-stranded DNA-binding protein. 6 117 39.4 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 BED32_02300 5a73f909967701a15f450f958a8b2098 182 PIRSF PIRSF002070 2 162 7.5E-41 T 11-10-2018 BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 Pfam PF07730 Histidine kinase 311 375 1.6E-9 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 Pfam PF05231 MASE1 7 283 8.6E-23 T 11-10-2018 IPR007895 MASE1 BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 Gene3D G3DSA:3.30.565.10 388 502 1.7E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 SMART SM00387 414 504 5.8E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 417 476 5.8E-6 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_00955 e5bae0e8e91166ba804bd8c283434a46 510 SUPERFAMILY SSF55874 383 501 1.09E-15 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_14615 640aacdb0af2e90944031531605f1814 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 71 2.2E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14615 640aacdb0af2e90944031531605f1814 310 Pfam PF03466 LysR substrate binding domain 97 249 1.7E-27 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_14615 640aacdb0af2e90944031531605f1814 310 Gene3D G3DSA:1.10.10.10 8 92 3.0E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14615 640aacdb0af2e90944031531605f1814 310 Gene3D G3DSA:3.40.190.10 103 269 3.8E-59 T 11-10-2018 BED32_14615 640aacdb0af2e90944031531605f1814 310 SUPERFAMILY SSF53850 96 287 1.5E-29 T 11-10-2018 BED32_14615 640aacdb0af2e90944031531605f1814 310 Gene3D G3DSA:3.40.190.10 169 262 3.8E-59 T 11-10-2018 BED32_14615 640aacdb0af2e90944031531605f1814 310 SUPERFAMILY SSF46785 9 89 4.99E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14615 640aacdb0af2e90944031531605f1814 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 3.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14615 640aacdb0af2e90944031531605f1814 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 3.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14615 640aacdb0af2e90944031531605f1814 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 3.4E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 SUPERFAMILY SSF53901 203 399 1.61E-71 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 SMART SM00825 Beta-ketoacyl synthase 5 400 4.9E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BED32_13160 d1651edb7e745424154a363fa035dbb6 400 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 143 159 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site BED32_13160 d1651edb7e745424154a363fa035dbb6 400 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 1 398 3.7E-187 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 235 9.5E-57 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BED32_13160 d1651edb7e745424154a363fa035dbb6 400 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 243 356 6.7E-39 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BED32_13160 d1651edb7e745424154a363fa035dbb6 400 Gene3D G3DSA:3.40.47.10 1 243 1.7E-81 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 PIRSF PIRSF000447 1 400 6.3E-193 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 SUPERFAMILY SSF53901 2 240 2.2E-72 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13160 d1651edb7e745424154a363fa035dbb6 400 Gene3D G3DSA:3.40.47.10 249 400 1.4E-55 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_11760 11a3ee1364c98552541195d747e8b723 72 SMART SM00530 3 58 4.3E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11760 11a3ee1364c98552541195d747e8b723 72 SUPERFAMILY SSF47413 3 55 1.88E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11760 11a3ee1364c98552541195d747e8b723 72 Pfam PF13560 Helix-turn-helix domain 4 56 1.4E-10 T 11-10-2018 BED32_11760 11a3ee1364c98552541195d747e8b723 72 Gene3D G3DSA:1.10.260.40 1 71 1.3E-12 T 11-10-2018 BED32_19800 caabc8398792e8fe552dda5a60b259f5 223 Gene3D G3DSA:3.20.20.70 11 218 7.6E-62 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_19800 caabc8398792e8fe552dda5a60b259f5 223 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 30 211 2.1E-57 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_19800 caabc8398792e8fe552dda5a60b259f5 223 SUPERFAMILY SSF51391 11 216 1.44E-64 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_19800 caabc8398792e8fe552dda5a60b259f5 223 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 11 216 20.313 T 11-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_19800 caabc8398792e8fe552dda5a60b259f5 223 Pfam PF02581 Thiamine monophosphate synthase 30 198 6.3E-56 T 11-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_00460 e1b207042114c99139925e286cd941d9 450 SMART SM00760 358 427 6.1E-45 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BED32_00460 e1b207042114c99139925e286cd941d9 450 Pfam PF11638 DnaA N-terminal domain 1 52 4.9E-15 T 11-10-2018 IPR024633 DnaA N-terminal domain BED32_00460 e1b207042114c99139925e286cd941d9 450 SMART SM00382 147 349 6.3E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00460 e1b207042114c99139925e286cd941d9 450 ProSitePatterns PS01008 DnaA protein signature. 408 427 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BED32_00460 e1b207042114c99139925e286cd941d9 450 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 1 448 5.8E-183 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BED32_00460 e1b207042114c99139925e286cd941d9 450 Gene3D G3DSA:1.10.8.60 281 351 1.1E-23 T 11-10-2018 BED32_00460 e1b207042114c99139925e286cd941d9 450 SUPERFAMILY SSF48295 346 449 3.4E-38 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_00460 e1b207042114c99139925e286cd941d9 450 SUPERFAMILY SSF52540 115 326 7.16E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00460 e1b207042114c99139925e286cd941d9 450 Gene3D G3DSA:1.10.1750.10 357 450 6.9E-40 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_00460 e1b207042114c99139925e286cd941d9 450 Gene3D G3DSA:3.40.50.300 101 279 1.7E-51 T 11-10-2018 BED32_00460 e1b207042114c99139925e286cd941d9 450 Pfam PF00308 Bacterial dnaA protein 116 332 5.4E-99 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA BED32_00460 e1b207042114c99139925e286cd941d9 450 Gene3D G3DSA:3.30.300.180 1 96 6.1E-34 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily BED32_00460 e1b207042114c99139925e286cd941d9 450 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 359 427 9.7E-33 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 BED32_00460 e1b207042114c99139925e286cd941d9 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 148 168 1.1E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_00460 e1b207042114c99139925e286cd941d9 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 408 427 1.1E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_00460 e1b207042114c99139925e286cd941d9 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 180 194 1.1E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_00460 e1b207042114c99139925e286cd941d9 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 226 1.1E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_00460 e1b207042114c99139925e286cd941d9 450 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 246 273 1.1E-54 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_00460 e1b207042114c99139925e286cd941d9 450 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 449 32.728 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 Pfam PF06144 DNA polymerase III, delta subunit 21 190 2.2E-43 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 18 332 8.9E-102 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 Gene3D G3DSA:1.10.8.60 143 213 2.7E-26 T 11-10-2018 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 SUPERFAMILY SSF52540 1 210 1.49E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 Gene3D G3DSA:1.20.272.10 214 343 5.3E-48 T 11-10-2018 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 214 337 1.9E-61 T 11-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 Gene3D G3DSA:3.40.50.300 1 140 7.5E-46 T 11-10-2018 BED32_07435 0cc95d8b52cea180e6b739263cfc6837 344 SUPERFAMILY SSF48019 212 333 1.87E-36 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BED32_11445 55c205a8310c612e58927515514cef0f 536 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 467 484 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_11445 55c205a8310c612e58927515514cef0f 536 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 421 514 3.6E-24 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BED32_11445 55c205a8310c612e58927515514cef0f 536 Pfam PF00367 phosphotransferase system, EIIB 458 489 3.9E-15 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_11445 55c205a8310c612e58927515514cef0f 536 TIGRFAM TIGR02004 PTS-IIBC-malX: PTS system, maltose and glucose-specific IIBC component 8 527 4.0E-261 T 11-10-2018 IPR011301 PTS system, maltose/glucose-specific IIBC component GO:0008982|GO:0009401 KEGG: 00500+2.7.1.208 BED32_11445 55c205a8310c612e58927515514cef0f 536 Gene3D G3DSA:3.30.1360.60 452 530 2.6E-26 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_11445 55c205a8310c612e58927515514cef0f 536 Pfam PF02378 Phosphotransferase system, EIIC 19 361 8.6E-85 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_11445 55c205a8310c612e58927515514cef0f 536 SUPERFAMILY SSF55604 457 528 6.8E-21 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_04675 95199e90aa2db95243e888be69f03220 846 Gene3D G3DSA:2.60.40.3110 274 362 5.0E-28 T 11-10-2018 BED32_04675 95199e90aa2db95243e888be69f03220 846 Gene3D G3DSA:2.60.40.2070 758 835 3.1E-29 T 11-10-2018 BED32_04675 95199e90aa2db95243e888be69f03220 846 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 316 326 - T 11-10-2018 IPR018030 Fimbrial membrane usher, conserved site BED32_04675 95199e90aa2db95243e888be69f03220 846 Gene3D G3DSA:2.60.40.2610 664 754 5.3E-15 T 11-10-2018 BED32_04675 95199e90aa2db95243e888be69f03220 846 Gene3D G3DSA:3.10.20.410 37 160 2.9E-24 T 11-10-2018 BED32_04675 95199e90aa2db95243e888be69f03220 846 Pfam PF00577 Outer membrane usher protein 201 749 1.3E-187 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BED32_04675 95199e90aa2db95243e888be69f03220 846 Pfam PF13954 PapC N-terminal domain 39 182 6.3E-39 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 BED32_04675 95199e90aa2db95243e888be69f03220 846 SUPERFAMILY SSF141729 37 158 4.58E-31 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 BED32_04675 95199e90aa2db95243e888be69f03220 846 Pfam PF13953 PapC C-terminal domain 760 816 3.6E-15 T 11-10-2018 IPR025949 PapC-like, C-terminal domain BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 7.4E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 Pfam PF03466 LysR substrate binding domain 91 292 2.3E-35 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 Gene3D G3DSA:3.40.190.10 164 264 2.8E-60 T 11-10-2018 BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 Gene3D G3DSA:1.10.10.10 1 87 1.6E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 Gene3D G3DSA:3.40.190.10 93 290 2.8E-60 T 11-10-2018 BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 SUPERFAMILY SSF53850 91 294 3.1E-37 T 11-10-2018 BED32_03525 3541f9b49d24fe578da1b1e66ec5a941 307 SUPERFAMILY SSF46785 3 112 3.59E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 SMART SM00490 517 601 6.7E-14 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Pfam PF12137 RNA polymerase recycling family C-terminal 605 965 7.3E-155 T 11-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 SUPERFAMILY SSF52540 125 378 5.2E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Gene3D G3DSA:3.30.360.80 713 786 4.1E-32 T 11-10-2018 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Pfam PF00176 SNF2 family N-terminal domain 174 441 9.0E-20 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Gene3D G3DSA:2.30.30.930 55 114 5.3E-30 T 11-10-2018 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 966 28.935 T 11-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Gene3D G3DSA:3.40.50.10810 150 428 7.8E-109 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Gene3D G3DSA:3.40.50.300 429 633 1.2E-46 T 11-10-2018 BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 SMART SM00487 150 342 5.4E-21 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Pfam PF00271 Helicase conserved C-terminal domain 492 601 1.4E-13 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 SUPERFAMILY SSF52540 273 643 1.25E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18045 c9b477f11b3ad5b957bbc06480b21e2f 968 Gene3D G3DSA:2.30.30.140 1 53 1.7E-23 T 11-10-2018 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 SUPERFAMILY SSF63380 1 93 3.66E-28 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 Gene3D G3DSA:2.40.30.20 94 191 1.3E-28 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 SUPERFAMILY SSF63380 93 199 6.63E-32 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 Pfam PF00677 Lumazine binding domain 100 185 3.0E-21 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 Pfam PF00677 Lumazine binding domain 3 87 5.0E-21 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 202 3.8E-84 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 PIRSF PIRSF000498 1 212 8.0E-74 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_10865 5fc4d3c189ca735b97fcc1b7359b5297 217 Gene3D G3DSA:2.40.30.20 1 89 1.6E-32 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 Pfam PF12833 Helix-turn-helix domain 205 284 7.7E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 Gene3D G3DSA:1.10.10.60 178 288 3.5E-27 T 11-10-2018 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 SUPERFAMILY SSF46689 182 232 7.79E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 SUPERFAMILY SSF46689 236 286 1.61E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 Gene3D G3DSA:2.60.120.280 12 174 8.5E-58 T 11-10-2018 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 236 278 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 Pfam PF02311 AraC-like ligand binding domain 27 162 4.1E-22 T 11-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 SUPERFAMILY SSF51215 12 168 4.45E-29 T 11-10-2018 IPR037923 Transcription regulator HTH-like BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 SMART SM00342 199 282 5.0E-31 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 266 5.7E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_11470 95e39ce33f36c8177abd9847aeb88bc3 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 282 5.7E-6 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_18690 1b6e946c299d3d0f76cd92ae818a10ca 279 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 10 55 3.2E-9 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BED32_18690 1b6e946c299d3d0f76cd92ae818a10ca 279 Gene3D G3DSA:1.10.3720.10 66 274 1.7E-23 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18690 1b6e946c299d3d0f76cd92ae818a10ca 279 SUPERFAMILY SSF161098 73 258 1.57E-27 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18690 1b6e946c299d3d0f76cd92ae818a10ca 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 276 1.5E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 414 452 2.9E-5 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 452 1.4E-92 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 Pfam PF00460 Flagella basal body rod protein 6 33 3.0E-5 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 SUPERFAMILY SSF64518 130 455 9.02E-14 T 11-10-2018 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 PRINTS PR01005 Flagellar hook-associated protein signature 48 70 1.0E-11 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 PRINTS PR01005 Flagellar hook-associated protein signature 10 33 1.0E-11 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 PRINTS PR01005 Flagellar hook-associated protein signature 213 231 1.0E-11 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 PRINTS PR01005 Flagellar hook-associated protein signature 122 142 1.0E-11 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_03925 eec3842df5a4b0eb50520da3457fcb4e 456 PRINTS PR01005 Flagellar hook-associated protein signature 155 179 1.0E-11 T 11-10-2018 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 BED32_04020 29069c9274966ee772eec0871e90e55d 163 TIGRFAM TIGR00140 hupD: hydrogenase expression/formation protein 3 152 1.5E-48 T 11-10-2018 IPR004419 Peptidase A31, hydrogenase expression/formation protein GO:0016485|GO:0046872 BED32_04020 29069c9274966ee772eec0871e90e55d 163 SUPERFAMILY SSF53163 1 158 8.89E-45 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily BED32_04020 29069c9274966ee772eec0871e90e55d 163 Gene3D G3DSA:3.40.50.1450 1 161 5.4E-44 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily BED32_04020 29069c9274966ee772eec0871e90e55d 163 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 148 2.8E-45 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 Pfam PF01750 Hydrogenase maturation protease 20 146 8.5E-34 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 PRINTS PR00446 Hydrogen uptake protein signature 56 66 2.9E-22 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 PRINTS PR00446 Hydrogen uptake protein signature 35 52 2.9E-22 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 PRINTS PR00446 Hydrogen uptake protein signature 67 83 2.9E-22 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 PRINTS PR00446 Hydrogen uptake protein signature 15 26 2.9E-22 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_04020 29069c9274966ee772eec0871e90e55d 163 PRINTS PR00446 Hydrogen uptake protein signature 3 15 2.9E-22 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SUPERFAMILY SSF50249 222 642 1.77E-140 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SUPERFAMILY SSF50249 643 732 4.32E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SMART SM00955 260 588 8.5E-181 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 726 8.7E-272 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SMART SM00316 643 726 3.3E-13 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Pfam PF08206 Ribonuclease B OB domain 158 213 6.6E-5 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Pfam PF08206 Ribonuclease B OB domain 87 144 3.1E-21 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 1.1E-16 T 11-10-2018 IPR013668 Ribonuclease R winged-helix domain BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Hamap MF_01895 Ribonuclease R [rnr]. 38 726 57.284 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SUPERFAMILY SSF50249 138 236 6.09E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Pfam PF00575 S1 RNA binding domain 642 724 1.0E-16 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SUPERFAMILY SSF50249 67 145 7.32E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Pfam PF00773 RNB domain 260 587 5.9E-106 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 726 7.4E-276 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Gene3D G3DSA:2.40.50.140 646 753 1.5E-23 T 11-10-2018 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Gene3D G3DSA:2.40.50.140 73 147 2.2E-15 T 11-10-2018 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 Gene3D G3DSA:2.40.50.140 148 214 2.4E-5 T 11-10-2018 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SMART SM00357 86 145 1.3E-16 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_19185 0b6cd8320d2a5c2a7d38145e2c3ee830 848 SMART SM00357 150 214 3.2 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 116 25.808 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 SUPERFAMILY SSF89919 2 110 2.88E-31 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 Pfam PF02033 Ribosome-binding factor A 7 115 3.9E-30 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 1.0E-40 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 Gene3D G3DSA:3.30.300.20 1 111 5.3E-38 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 103 2.0E-49 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 BED32_18920 ad6a8cdbdefee861c2a9a72cddd5da9c 136 ProSitePatterns PS01319 Ribosome-binding factor A signature. 82 103 - T 11-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 BED32_18075 07e2ffd4e555fe1f23ad49d194317e95 331 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 7 325 2.8E-130 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 BED32_18075 07e2ffd4e555fe1f23ad49d194317e95 331 Gene3D G3DSA:3.40.718.10 1 331 9.0E-135 T 11-10-2018 BED32_18075 07e2ffd4e555fe1f23ad49d194317e95 331 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 35 322 6.1E-108 T 11-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 BED32_18075 07e2ffd4e555fe1f23ad49d194317e95 331 SUPERFAMILY SSF53659 7 328 1.6E-115 T 11-10-2018 BED32_18075 07e2ffd4e555fe1f23ad49d194317e95 331 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 5 329 36.521 T 11-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 SMART SM00382 31 231 2.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 Gene3D G3DSA:3.40.50.300 5 253 4.7E-61 T 11-10-2018 BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 234 254 6.3E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 SUPERFAMILY SSF52540 5 253 4.26E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20145 eab7f55c6ac8d0b3d86fbe5a44aaed2a 255 Pfam PF00005 ABC transporter 23 182 6.7E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_21595 465485303fd68b2349b2970ff4b370c5 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 12 82 3.2E-32 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BED32_21595 465485303fd68b2349b2970ff4b370c5 85 SMART SM01234 8 75 7.8E-44 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BED32_21595 465485303fd68b2349b2970ff4b370c5 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 22 68 6.0E-21 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BED32_21595 465485303fd68b2349b2970ff4b370c5 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.533 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BED32_21595 465485303fd68b2349b2970ff4b370c5 85 Pfam PF01809 Haemolytic domain 10 75 1.6E-29 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SUPERFAMILY SSF47384 217 298 3.53E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 Gene3D G3DSA:3.30.565.10 303 455 5.8E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SMART SM00388 234 298 2.5E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 343 453 2.1E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 234 297 7.9E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SMART SM00304 181 233 2.7E-14 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 Pfam PF00672 HAMP domain 181 229 5.7E-13 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 Gene3D G3DSA:1.10.287.130 179 293 1.1E-27 T 11-10-2018 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SUPERFAMILY SSF55874 287 453 7.33E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SMART SM00387 343 455 2.6E-34 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 408 3.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 394 3.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 3.0E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_15770 a5f6d055f4066d1946598c199b83ea3e 458 SUPERFAMILY SSF158472 182 230 2.88E-10 T 11-10-2018 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.55 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 6.8E-55 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 SUPERFAMILY SSF50193 2 122 1.57E-51 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 5.0E-60 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 Gene3D G3DSA:2.40.150.20 1 123 2.9E-57 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01925 13b85a28b0b4b309ba6e7945e5bc55a1 123 SMART SM01374 1 123 2.8E-86 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 BED32_08495 330a0138bb60603c71a9b0cf20840306 545 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 228 249 1.4E-9 T 11-10-2018 BED32_08495 330a0138bb60603c71a9b0cf20840306 545 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 321 333 1.4E-9 T 11-10-2018 BED32_08495 330a0138bb60603c71a9b0cf20840306 545 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 73 98 1.4E-9 T 11-10-2018 BED32_08495 330a0138bb60603c71a9b0cf20840306 545 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 102 2.6E-7 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08495 330a0138bb60603c71a9b0cf20840306 545 Pfam PF00361 Proton-conducting membrane transporter 132 425 3.8E-56 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_15460 45d71356eaf72049c483e24bae0f33ad 141 SUPERFAMILY SSF55729 1 130 4.92E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_15460 45d71356eaf72049c483e24bae0f33ad 141 Hamap MF_01127 Acetyltransferase YpeA [ypeA]. 1 141 54.83 T 11-10-2018 IPR023072 Acetyltransferase, YpeA GO:0016747 BED32_15460 45d71356eaf72049c483e24bae0f33ad 141 Pfam PF00583 Acetyltransferase (GNAT) family 22 123 3.7E-17 T 11-10-2018 IPR000182 GNAT domain BED32_15460 45d71356eaf72049c483e24bae0f33ad 141 Gene3D G3DSA:3.40.630.30 1 141 4.3E-42 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 Gene3D G3DSA:2.40.50.230 361 462 1.0E-41 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 Gene3D G3DSA:3.55.50.10 106 196 1.2E-90 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 Gene3D G3DSA:3.30.1920.30 232 294 1.2E-90 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 6 527 5.1E-154 T 11-10-2018 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 Pfam PF05954 Phage late control gene D protein (GPD) 18 336 3.9E-87 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 SUPERFAMILY SSF69279 6 192 6.38E-50 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 12 510 8.2E-118 T 11-10-2018 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 SUPERFAMILY SSF69349 448 660 2.2E-42 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 SUPERFAMILY SSF69255 370 458 6.54E-32 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 Gene3D G3DSA:2.30.110.50 5 337 1.2E-90 T 11-10-2018 BED32_09095 727a9b7ea7a53e314bb731ee3e6fbfcb 777 SUPERFAMILY SSF69279 199 370 5.95E-36 T 11-10-2018 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Gene3D G3DSA:2.60.40.10 630 731 2.6E-25 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Gene3D G3DSA:3.10.350.10 57 127 7.4E-8 T 11-10-2018 IPR036779 LysM domain superfamily BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Pfam PF09134 Invasin, domain 3 532 627 1.7E-7 T 11-10-2018 IPR015217 Invasin, domain 3 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Pfam PF09134 Invasin, domain 3 633 731 2.0E-27 T 11-10-2018 IPR015217 Invasin, domain 3 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Pfam PF11924 Inverse autotransporter, beta-domain 155 422 1.2E-107 T 11-10-2018 IPR024519 Inverse autotransporter, beta-domain BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Gene3D G3DSA:2.40.160.160 185 429 6.6E-108 T 11-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Gene3D G3DSA:2.60.40.10 529 629 1.1E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 Gene3D G3DSA:2.60.40.1080 736 820 1.9E-17 T 11-10-2018 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 SMART SM00634 636 725 3.6E-6 T 11-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 PRINTS PR01369 Intimin signature 370 389 1.8E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 PRINTS PR01369 Intimin signature 302 321 1.8E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 PRINTS PR01369 Intimin signature 274 289 1.8E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 PRINTS PR01369 Intimin signature 457 469 1.8E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 SUPERFAMILY SSF49373 633 729 1.43E-18 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 SUPERFAMILY SSF49373 737 809 9.42E-9 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22110 a2a217874d887eaa3cd9cdb94a344fc9 935 SUPERFAMILY SSF49373 531 623 3.92E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 Gene3D G3DSA:1.10.10.10 118 176 7.6E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 Pfam PF00072 Response regulator receiver domain 6 99 1.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 Gene3D G3DSA:3.40.50.2300 3 117 1.8E-27 T 11-10-2018 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 164 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 136 152 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 122 136 1.7E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 SMART SM00421 119 176 7.6E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 SUPERFAMILY SSF52172 5 144 7.54E-27 T 11-10-2018 IPR011006 CheY-like superfamily BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 SMART SM00448 1 99 5.3E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_13275 72d5e4e10a2154a3a772dba72e47ef25 180 Pfam PF00196 Bacterial regulatory proteins, luxR family 121 175 2.6E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 23 240 4.5E-75 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 Gene3D G3DSA:3.90.550.10 16 245 2.2E-76 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 20 240 42.891 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 21 242 2.8E-84 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 SUPERFAMILY SSF53448 21 241 2.6E-59 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_04615 aea45304c6b9aa414f3364a19215b9f0 247 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 115 122 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Pfam PF00384 Molybdopterin oxidoreductase 52 509 1.5E-60 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 SUPERFAMILY SSF50692 618 750 3.52E-33 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Gene3D G3DSA:2.40.40.20 599 752 6.8E-40 T 11-10-2018 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Gene3D G3DSA:3.40.50.740 52 517 5.2E-190 T 11-10-2018 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Pfam PF01568 Molydopterin dinucleotide binding domain 625 745 4.1E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 453 470 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Gene3D G3DSA:3.90.55.10 10 565 5.2E-190 T 11-10-2018 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 Gene3D G3DSA:3.40.228.10 145 591 5.2E-190 T 11-10-2018 BED32_17110 583fbd9d10c214727169cfac00f11ea5 752 SUPERFAMILY SSF53706 10 627 1.7E-151 T 11-10-2018 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 SUPERFAMILY SSF51905 14 459 5.71E-73 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_16285 403dce17e1724aacacf14fdcebffd612 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 23 42 1.3E-9 T 11-10-2018 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 367 389 1.3E-9 T 11-10-2018 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 534 1.8E-14 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 Pfam PF00890 FAD binding domain 22 404 7.3E-100 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 SUPERFAMILY SSF46977 437 537 1.7E-31 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 Gene3D G3DSA:3.90.700.10 260 370 4.9E-153 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 PIRSF PIRSF000171 12 262 4.4E-22 T 11-10-2018 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 PIRSF PIRSF000171 351 543 1.0E-12 T 11-10-2018 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 21 532 8.9E-222 T 11-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 SUPERFAMILY SSF56425 250 365 8.22E-41 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_16285 403dce17e1724aacacf14fdcebffd612 545 Gene3D G3DSA:3.50.50.60 22 416 4.9E-153 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_16285 403dce17e1724aacacf14fdcebffd612 545 Gene3D G3DSA:1.20.58.100 437 545 5.0E-46 T 11-10-2018 BED32_14565 3061c45f6e1df194d1cc1d29f2c031c8 100 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 2 100 19.962 T 11-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 BED32_14565 3061c45f6e1df194d1cc1d29f2c031c8 100 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 8 95 8.3E-22 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BED32_17430 789d9755fe7209a02f9124f133a90faf 475 SMART SM00387 364 474 3.4E-32 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 473 7.3E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_17430 789d9755fe7209a02f9124f133a90faf 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 2.4E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 452 2.4E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 2.4E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Gene3D G3DSA:3.30.565.10 323 474 9.3E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Gene3D G3DSA:1.10.287.130 204 316 3.5E-13 T 11-10-2018 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Gene3D G3DSA:3.30.450.20 50 166 3.7E-6 T 11-10-2018 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 SUPERFAMILY SSF55874 311 472 3.01E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_17430 789d9755fe7209a02f9124f133a90faf 475 SUPERFAMILY SSF47384 254 319 3.14E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Pfam PF14827 Double sensory domain of two-component sensor kinase 60 168 6.9E-7 T 11-10-2018 IPR029150 Double Cache domain 3 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 SMART SM00388 255 320 5.0E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_17430 789d9755fe7209a02f9124f133a90faf 475 SUPERFAMILY SSF103190 56 170 1.26E-12 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BED32_17430 789d9755fe7209a02f9124f133a90faf 475 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 5.3E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_06470 becd52a7d785a8436d99e7197a507b99 70 Pfam PF13275 S4 domain 8 68 3.0E-22 T 11-10-2018 BED32_06470 becd52a7d785a8436d99e7197a507b99 70 SUPERFAMILY SSF55174 6 69 1.7E-18 T 11-10-2018 BED32_06470 becd52a7d785a8436d99e7197a507b99 70 Gene3D G3DSA:3.10.290.10 1 70 1.4E-25 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 4.9E-134 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 743 34.116 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Gene3D G3DSA:3.90.199.10 31 162 3.8E-59 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 SUPERFAMILY SSF101904 498 741 1.83E-51 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BED32_03540 22059e444022fed67c7fdc008ac05b66 758 SUPERFAMILY SSF56719 32 483 1.7E-153 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Gene3D G3DSA:2.120.10.90 501 730 1.3E-11 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 696 4.1E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 633 1.8E-4 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 SMART SM00434 12 462 3.6E-237 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 9 742 0.0 T 11-10-2018 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Gene3D G3DSA:1.10.268.10 345 484 2.1E-45 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_03540 22059e444022fed67c7fdc008ac05b66 758 Gene3D G3DSA:3.30.1360.40 163 344 2.7E-70 T 11-10-2018 BED32_00185 f84e9c6bb0b96be971d9d87da5ba9d02 283 Pfam PF13700 Domain of unknown function (DUF4158) 6 130 2.7E-35 T 11-10-2018 IPR025296 Domain of unknown function DUF4158 BED32_00185 f84e9c6bb0b96be971d9d87da5ba9d02 283 Pfam PF01526 Tn3 transposase DDE domain 129 255 2.5E-48 T 11-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 BED32_14325 ea547d56316832a1da5fe23900b018df 207 Pfam PF00717 Peptidase S24-like 151 205 7.3E-12 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_14325 ea547d56316832a1da5fe23900b018df 207 Gene3D G3DSA:1.10.260.40 1 91 6.6E-36 T 11-10-2018 BED32_14325 ea547d56316832a1da5fe23900b018df 207 SMART SM00530 16 75 5.1E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_14325 ea547d56316832a1da5fe23900b018df 207 SUPERFAMILY SSF51306 109 205 3.66E-18 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_14325 ea547d56316832a1da5fe23900b018df 207 Gene3D G3DSA:2.10.109.10 105 207 7.8E-37 T 11-10-2018 BED32_14325 ea547d56316832a1da5fe23900b018df 207 Pfam PF01381 Helix-turn-helix 25 73 3.0E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_14325 ea547d56316832a1da5fe23900b018df 207 SUPERFAMILY SSF47413 1 93 1.93E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_06055 8e47924c11dbcd23bc3356875f936e18 492 TIGRFAM TIGR00901 2A0125: AmpG-like permease 25 363 7.3E-118 T 11-10-2018 BED32_06055 8e47924c11dbcd23bc3356875f936e18 492 Gene3D G3DSA:1.20.1250.20 214 409 2.6E-15 T 11-10-2018 BED32_06055 8e47924c11dbcd23bc3356875f936e18 492 Gene3D G3DSA:1.20.1250.20 4 197 9.3E-18 T 11-10-2018 BED32_06055 8e47924c11dbcd23bc3356875f936e18 492 SUPERFAMILY SSF103473 6 403 4.84E-45 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_06055 8e47924c11dbcd23bc3356875f936e18 492 Pfam PF07690 Major Facilitator Superfamily 17 366 2.5E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_08195 12b591b6b8fb9a78ef1693ca153963db 276 Gene3D G3DSA:1.10.3720.10 62 264 1.9E-26 T 11-10-2018 IPR035906 MetI-like superfamily BED32_08195 12b591b6b8fb9a78ef1693ca153963db 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 262 4.8E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_08195 12b591b6b8fb9a78ef1693ca153963db 276 SUPERFAMILY SSF161098 67 255 5.63E-32 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:1.10.8.750 152 212 7.2E-28 T 11-10-2018 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF52317 1036 1294 7.37E-98 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF56042 430 614 1.21E-53 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1040 1293 9.4E-106 T 11-10-2018 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:3.40.50.880 982 1296 1.2E-140 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:3.90.650.10 808 981 2.8E-26 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 835 965 2.3E-12 T 11-10-2018 IPR010918 PurM-like, C-terminal domain BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Pfam PF02769 AIR synthase related protein, C-terminal domain 431 587 6.9E-28 T 11-10-2018 IPR010918 PurM-like, C-terminal domain BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF82697 1 151 9.42E-52 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF55326 220 427 4.88E-65 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SMART SM01211 1040 1295 1.1E-159 T 11-10-2018 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF56042 822 1034 1.48E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:3.30.1330.10 613 807 1.3E-24 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1296 21.443 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:3.90.650.10 419 605 2.5E-58 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 Gene3D G3DSA:3.30.1330.10 213 418 7.6E-43 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1294 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF55326 618 815 2.2E-66 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_16180 3b675ec29cc92b1f219a07bce8f6ca95 1296 SUPERFAMILY SSF109736 154 219 5.49E-21 T 11-10-2018 BED32_02325 49b831f64f58537c240f7dc6ec5c2c97 549 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 7 546 6.7E-209 T 11-10-2018 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 BED32_02325 49b831f64f58537c240f7dc6ec5c2c97 549 Pfam PF00999 Sodium/hydrogen exchanger family 8 421 1.2E-79 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BED32_10010 893b618a69bdd7f58e0fd6d81d163702 269 Pfam PF05013 N-formylglutamate amidohydrolase 15 232 4.6E-62 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase BED32_10010 893b618a69bdd7f58e0fd6d81d163702 269 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 7 265 8.2E-116 T 11-10-2018 IPR010247 N-formylglutamate deformylase BED32_10010 893b618a69bdd7f58e0fd6d81d163702 269 Gene3D G3DSA:3.40.630.40 3 265 4.1E-67 T 11-10-2018 BED32_10010 893b618a69bdd7f58e0fd6d81d163702 269 SUPERFAMILY SSF53187 4 265 5.23E-76 T 11-10-2018 BED32_03720 9997a8d708e9c4e14803f10232dd9706 209 Gene3D G3DSA:3.40.50.300 1 208 1.8E-46 T 11-10-2018 BED32_03720 9997a8d708e9c4e14803f10232dd9706 209 SMART SM00382 26 207 4.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_03720 9997a8d708e9c4e14803f10232dd9706 209 SUPERFAMILY SSF52540 6 198 5.33E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03720 9997a8d708e9c4e14803f10232dd9706 209 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_03720 9997a8d708e9c4e14803f10232dd9706 209 Pfam PF00005 ABC transporter 19 163 7.9E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08010 48112b96ce3f36df62c397b36748a7cc 307 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 12 260 2.0E-91 T 11-10-2018 IPR010119 Gluconeogenesis factor BED32_08010 48112b96ce3f36df62c397b36748a7cc 307 Gene3D G3DSA:3.40.50.12300 9 301 3.7E-73 T 11-10-2018 IPR038136 Gluconeogenesis factor superfamily BED32_08010 48112b96ce3f36df62c397b36748a7cc 307 SUPERFAMILY SSF142338 11 294 1.44E-78 T 11-10-2018 BED32_08010 48112b96ce3f36df62c397b36748a7cc 307 Pfam PF01933 Uncharacterised protein family UPF0052 12 295 2.0E-71 T 11-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 BED32_08010 48112b96ce3f36df62c397b36748a7cc 307 Hamap MF_00973 Gluconeogenesis factor. 8 300 31.128 T 11-10-2018 IPR010119 Gluconeogenesis factor BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Pfam PF03880 DbpA RNA binding domain 496 565 1.8E-19 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Gene3D G3DSA:3.40.50.300 216 431 8.7E-50 T 11-10-2018 BED32_18895 82fa4dd36425e80820b96650107c21e2 657 SMART SM00487 26 224 7.2E-65 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_18895 82fa4dd36425e80820b96650107c21e2 657 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Pfam PF00270 DEAD/DEAH box helicase 32 196 3.5E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_18895 82fa4dd36425e80820b96650107c21e2 657 SMART SM00490 260 341 6.3E-32 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Gene3D G3DSA:3.30.70.330 493 566 3.1E-9 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Pfam PF12343 Cold shock protein DEAD box A 584 657 2.8E-17 T 11-10-2018 IPR021046 Cold-shock protein, DEAD box A, C-terminal GO:0016817 BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 2 567 46.927 T 11-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Pfam PF00271 Helicase conserved C-terminal domain 233 341 2.9E-29 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_18895 82fa4dd36425e80820b96650107c21e2 657 SUPERFAMILY SSF52540 75 362 4.9E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18895 82fa4dd36425e80820b96650107c21e2 657 Gene3D G3DSA:3.40.50.300 2 213 5.1E-77 T 11-10-2018 BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 51 156 1.3E-18 T 11-10-2018 IPR000014 PAS domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Pfam PF00990 Diguanylate cyclase, GGDEF domain 299 460 2.6E-47 T 11-10-2018 IPR000160 GGDEF domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SUPERFAMILY SSF55073 304 462 4.71E-44 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SMART SM00086 112 154 5.2E-6 T 11-10-2018 IPR001610 PAC motif BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SMART SM00086 247 288 150.0 T 11-10-2018 IPR001610 PAC motif BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Gene3D G3DSA:3.30.70.270 286 465 5.0E-54 T 11-10-2018 BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Gene3D G3DSA:3.30.450.20 41 169 1.8E-25 T 11-10-2018 BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SUPERFAMILY SSF55785 177 290 3.44E-13 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Pfam PF13426 PAS domain 53 153 1.7E-14 T 11-10-2018 IPR000014 PAS domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SUPERFAMILY SSF55785 53 162 1.03E-19 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Pfam PF08447 PAS fold 194 278 1.3E-8 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SMART SM00267 288 464 1.4E-60 T 11-10-2018 IPR000160 GGDEF domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 295 463 1.3E-50 T 11-10-2018 IPR000160 GGDEF domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SMART SM00091 40 107 2.2E-5 T 11-10-2018 IPR000014 PAS domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 SMART SM00091 166 241 1.6 T 11-10-2018 IPR000014 PAS domain BED32_12840 b23158717d9fa941cab0e8a0d0a381f6 467 Gene3D G3DSA:3.30.450.20 170 285 4.8E-17 T 11-10-2018 BED32_16515 a979843a0a15215a5761c04a470b506c 527 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 429 2.3E-81 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_16515 a979843a0a15215a5761c04a470b506c 527 PIRSF PIRSF002741 28 517 7.5E-77 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_16515 a979843a0a15215a5761c04a470b506c 527 Gene3D G3DSA:3.40.190.10 44 510 1.5E-181 T 11-10-2018 BED32_16515 a979843a0a15215a5761c04a470b506c 527 SUPERFAMILY SSF53850 27 507 1.25E-97 T 11-10-2018 BED32_16515 a979843a0a15215a5761c04a470b506c 527 Gene3D G3DSA:3.10.105.10 252 498 1.5E-181 T 11-10-2018 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 SUPERFAMILY SSF52540 334 572 1.88E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 Gene3D G3DSA:1.20.1560.10 4 321 6.6E-28 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 Pfam PF00005 ABC transporter 356 503 1.2E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 Gene3D G3DSA:3.40.50.300 332 574 2.9E-77 T 11-10-2018 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 ProSitePatterns PS00211 ABC transporters family signature. 476 490 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 SMART SM00382 365 550 5.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 SUPERFAMILY SSF90123 7 327 1.11E-40 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 Pfam PF00664 ABC transporter transmembrane region 37 287 9.9E-10 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_13765 3642f984a6c626fa3ac0ed1c4b3796ca 574 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 534 1.7E-158 T 11-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 BED32_05050 08829330636b91cf695451020e01e059 243 Pfam PF13525 Outer membrane lipoprotein 28 236 9.3E-85 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like BED32_05050 08829330636b91cf695451020e01e059 243 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 4 242 38.772 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD BED32_05050 08829330636b91cf695451020e01e059 243 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 241 3.3E-89 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD BED32_05050 08829330636b91cf695451020e01e059 243 SUPERFAMILY SSF48452 27 119 1.42E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_05050 08829330636b91cf695451020e01e059 243 Gene3D G3DSA:1.25.40.10 29 243 1.5E-62 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 PIRSF PIRSF002096 1 136 5.3E-57 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 Pfam PF00816 H-NS histone family 32 128 5.2E-20 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 Gene3D G3DSA:1.10.287.1050 1 83 5.1E-37 T 11-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 Gene3D G3DSA:4.10.430.10 92 136 1.0E-25 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 SUPERFAMILY SSF81273 2 58 4.32E-18 T 11-10-2018 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 SMART SM00528 88 136 1.1E-25 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 BED32_12135 6d52fbf93a7d33f42ca64f5920dff88d 136 SUPERFAMILY SSF81273 94 136 1.06E-12 T 11-10-2018 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 SUPERFAMILY SSF54637 7 136 2.05E-38 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 15 32 - T 11-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 10 134 1.6E-50 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 129 2.5E-42 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 Pfam PF03061 Thioesterase superfamily 24 107 3.3E-16 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 Gene3D G3DSA:3.10.129.10 4 137 3.3E-41 T 11-10-2018 BED32_07805 2afaed71fbbf4537183f0e7d9ec11f99 137 PIRSF PIRSF003230 3 137 6.8E-47 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 SUPERFAMILY SSF47757 14 90 4.84E-25 T 11-10-2018 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 151 167 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 117 137 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 45 58 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 242 265 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 223 237 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PRINTS PR00996 Glutamate methyltransferase family signature 84 96 4.8E-45 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 SUPERFAMILY SSF53335 91 280 4.75E-59 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 Pfam PF01739 CheR methyltransferase, SAM binding domain 91 278 2.7E-58 T 11-10-2018 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 SMART SM00138 23 283 1.5E-114 T 11-10-2018 IPR000780 MCP methyltransferase, CheR-type GO:0008757 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 Gene3D G3DSA:1.10.155.10 10 89 1.0E-32 T 11-10-2018 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 PIRSF PIRSF000410 10 284 4.3E-99 T 11-10-2018 IPR026024 Chemotaxis protein methyltransferase CheR BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 Gene3D G3DSA:3.40.50.150 90 283 3.7E-72 T 11-10-2018 BED32_09550 eda0a9f6cce9e25eac426f0948c71c35 286 Pfam PF03705 CheR methyltransferase, all-alpha domain 25 76 8.4E-20 T 11-10-2018 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Gene3D G3DSA:3.40.50.970 416 613 3.6E-44 T 11-10-2018 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 478 497 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 SUPERFAMILY SSF52518 419 631 5.36E-52 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Gene3D G3DSA:3.40.50.970 1 209 3.6E-31 T 11-10-2018 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Gene3D G3DSA:3.40.50.1220 214 393 6.8E-34 T 11-10-2018 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 442 601 1.7E-38 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 SUPERFAMILY SSF52467 185 371 5.46E-40 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 5 644 5.9E-288 T 11-10-2018 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 SUPERFAMILY SSF52518 2 208 9.36E-31 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 196 1.2E-31 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_01335 aed9fd65df6267e3a974b8bc2b8da10f 646 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 220 353 3.7E-30 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 PIRSF PIRSF003182 1 778 0.0 T 11-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 505 1.3E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SMART SM00091 155 221 4.9E-8 T 11-10-2018 IPR000014 PAS domain BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:1.20.120.160 656 778 2.0E-32 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:3.30.565.10 348 508 1.6E-41 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SUPERFAMILY SSF47226 661 774 1.16E-31 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:3.30.450.20 152 266 5.6E-20 T 11-10-2018 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SUPERFAMILY SSF55874 336 505 4.58E-40 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 6.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SMART SM00073 675 772 8.2E-19 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SUPERFAMILY SSF55785 143 267 6.28E-22 T 11-10-2018 IPR035965 PAS domain superfamily BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:3.40.50.2300 509 647 1.0E-33 T 11-10-2018 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:1.10.287.130 267 345 2.5E-21 T 11-10-2018 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Gene3D G3DSA:1.10.287.970 1 89 4.9E-38 T 11-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SMART SM00387 394 507 2.3E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SUPERFAMILY SSF47384 269 347 9.61E-17 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Pfam PF00989 PAS fold 157 266 8.5E-18 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Pfam PF00072 Response regulator receiver domain 527 638 9.1E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 153 276 4.0E-16 T 11-10-2018 IPR000014 PAS domain BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SMART SM00388 282 347 4.8E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 445 1.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 1.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 459 1.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 1.6E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SUPERFAMILY SSF52172 525 659 1.31E-30 T 11-10-2018 IPR011006 CheY-like superfamily BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 Pfam PF01627 Hpt domain 686 763 4.1E-14 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_03060 a6fb96e06cd51b2b6ef65b479b635af8 778 SMART SM00448 525 638 1.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 Gene3D G3DSA:3.90.930.12 1 82 1.7E-30 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.3E-73 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 Pfam PF00347 Ribosomal protein L6 90 164 6.6E-19 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 Pfam PF00347 Ribosomal protein L6 11 82 2.8E-19 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 PIRSF PIRSF002162 1 177 4.9E-44 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 SUPERFAMILY SSF56053 83 177 9.08E-36 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-33 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 SUPERFAMILY SSF56053 1 82 2.09E-23 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 Gene3D G3DSA:3.90.930.12 83 177 9.7E-40 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01950 c3585cd03e547f9676f7ec2390414c9f 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.625 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_00570 879d9468359baf717cfd35452e98cff5 342 Gene3D G3DSA:3.40.50.2300 168 297 7.0E-86 T 11-10-2018 BED32_00570 879d9468359baf717cfd35452e98cff5 342 Gene3D G3DSA:3.40.50.2300 71 315 7.0E-86 T 11-10-2018 BED32_00570 879d9468359baf717cfd35452e98cff5 342 SUPERFAMILY SSF53822 68 340 7.07E-95 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_00570 879d9468359baf717cfd35452e98cff5 342 Pfam PF13377 Periplasmic binding protein-like domain 176 337 2.4E-43 T 11-10-2018 BED32_00570 879d9468359baf717cfd35452e98cff5 342 SUPERFAMILY SSF47413 8 67 8.16E-15 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_00570 879d9468359baf717cfd35452e98cff5 342 Gene3D G3DSA:1.10.260.40 1 67 5.7E-24 T 11-10-2018 BED32_00570 879d9468359baf717cfd35452e98cff5 342 SMART SM00354 9 79 2.5E-27 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_00570 879d9468359baf717cfd35452e98cff5 342 Pfam PF00356 Bacterial regulatory proteins, lacI family 11 55 1.6E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_00570 879d9468359baf717cfd35452e98cff5 342 ProSitePatterns PS00356 LacI-type HTH domain signature. 12 30 - T 11-10-2018 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Gene3D G3DSA:1.10.10.10 1 107 3.7E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_07935 6fa7104306040d688a0b07aef72af72e 263 SUPERFAMILY SSF50331 171 259 5.67E-15 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_07935 6fa7104306040d688a0b07aef72af72e 263 SUPERFAMILY SSF46785 2 103 1.21E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 20 83 7.3E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Pfam PF03459 TOBE domain 124 188 2.6E-14 T 11-10-2018 IPR005116 Transport-associated OB, type 1 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Pfam PF03459 TOBE domain 198 258 1.1E-12 T 11-10-2018 IPR005116 Transport-associated OB, type 1 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 PIRSF PIRSF005763 1 263 6.4E-94 T 11-10-2018 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 122 191 1.2E-25 T 11-10-2018 IPR004606 Molybdenum-pterin binding GO:0015689 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 SUPERFAMILY SSF50331 122 191 1.7E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Gene3D G3DSA:2.40.50.100 183 253 1.2E-17 T 11-10-2018 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 Gene3D G3DSA:2.40.50.100 108 182 1.0E-23 T 11-10-2018 BED32_07935 6fa7104306040d688a0b07aef72af72e 263 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 16 112 6.6E-38 T 11-10-2018 IPR003725 Molybdenum-binding protein ModE, N-terminal BED32_11905 702c21e47acbcb64b7fa643025cca4d9 95 Gene3D G3DSA:1.10.1220.10 1 47 2.8E-7 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BED32_11905 702c21e47acbcb64b7fa643025cca4d9 95 SUPERFAMILY SSF47598 1 43 3.19E-8 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_01275 973951969d312ea00847d7c238bc7b85 260 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 239 6.6E-91 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01275 973951969d312ea00847d7c238bc7b85 260 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 215 6.2E-42 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_01275 973951969d312ea00847d7c238bc7b85 260 Gene3D G3DSA:3.40.1010.10 3 119 3.0E-39 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_01275 973951969d312ea00847d7c238bc7b85 260 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01275 973951969d312ea00847d7c238bc7b85 260 Gene3D G3DSA:3.30.950.10 120 258 4.9E-42 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_01275 973951969d312ea00847d7c238bc7b85 260 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_01275 973951969d312ea00847d7c238bc7b85 260 SUPERFAMILY SSF53790 2 238 1.44E-71 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_08605 547beca18d8e6cda9f1006f5db5d6abe 615 Pfam PF13502 AsmA-like C-terminal region 356 540 6.3E-19 T 11-10-2018 IPR032712 AsmA-like, C-terminal BED32_08605 547beca18d8e6cda9f1006f5db5d6abe 615 Pfam PF05170 AsmA family 3 270 2.7E-22 T 11-10-2018 IPR007844 AsmA BED32_08125 d86e4019500e5a420fa715140561c38e 290 Gene3D G3DSA:1.10.3720.10 87 284 3.6E-32 T 11-10-2018 IPR035906 MetI-like superfamily BED32_08125 d86e4019500e5a420fa715140561c38e 290 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 16 282 1.9E-81 T 11-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 BED32_08125 d86e4019500e5a420fa715140561c38e 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 270 5.6E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_08125 d86e4019500e5a420fa715140561c38e 290 SUPERFAMILY SSF161098 88 274 1.03E-31 T 11-10-2018 IPR035906 MetI-like superfamily BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 Gene3D G3DSA:3.10.420.10 1 153 6.5E-63 T 11-10-2018 IPR035958 SecB-like superfamily BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 145 33.658 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 Pfam PF02556 Preprotein translocase subunit SecB 5 144 9.0E-58 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 SUPERFAMILY SSF54611 2 141 6.32E-54 T 11-10-2018 IPR035958 SecB-like superfamily BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 146 1.6E-69 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 73 93 7.2E-42 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 13 30 7.2E-42 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 123 141 7.2E-42 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20905 7692653600f3e2e9f068e404a6d2afb7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 97 119 7.2E-42 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 BED32_20780 8f4d15c499e6e11d9ef3f60efeb8f34e 214 SUPERFAMILY SSF46785 16 194 2.66E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20780 8f4d15c499e6e11d9ef3f60efeb8f34e 214 Gene3D G3DSA:1.10.10.10 10 115 8.1E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 Gene3D G3DSA:3.30.70.260 233 337 5.1E-24 T 11-10-2018 BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 SMART SM00382 30 224 1.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 Pfam PF09383 NIL domain 265 334 4.9E-18 T 11-10-2018 IPR018449 NIL domain BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 SUPERFAMILY SSF55021 249 337 3.55E-21 T 11-10-2018 BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 Gene3D G3DSA:3.40.50.300 1 232 3.3E-70 T 11-10-2018 BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 SUPERFAMILY SSF52540 1 240 1.33E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 SMART SM00930 262 337 2.9E-25 T 11-10-2018 IPR018449 NIL domain BED32_21570 7ecd00c3592273899a2b30b5b014791e 338 Pfam PF00005 ABC transporter 21 169 5.3E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 ProSitePatterns PS00211 ABC transporters family signature. 132 146 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 SUPERFAMILY SSF52540 1 239 2.32E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13905 b53529800162f24c3634a4ee20c2baab 359 Gene3D G3DSA:2.40.50.940 221 283 3.5E-11 T 11-10-2018 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 Pfam PF00005 ABC transporter 18 159 4.3E-39 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 Pfam PF08402 TOBE domain 277 357 1.4E-20 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 SMART SM00382 26 209 2.0E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13905 b53529800162f24c3634a4ee20c2baab 359 SUPERFAMILY SSF50331 234 357 7.94E-18 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_13905 b53529800162f24c3634a4ee20c2baab 359 Gene3D G3DSA:2.40.50.140 284 338 3.5E-11 T 11-10-2018 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 32 357 8.8E-147 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 BED32_13905 b53529800162f24c3634a4ee20c2baab 359 Gene3D G3DSA:3.40.50.300 1 220 1.4E-70 T 11-10-2018 BED32_02595 a9f81dcd00e514fbf395065e77ebf03a 330 Gene3D G3DSA:1.10.443.10 166 327 7.1E-42 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_02595 a9f81dcd00e514fbf395065e77ebf03a 330 Gene3D G3DSA:1.10.150.130 56 165 2.8E-5 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_02595 a9f81dcd00e514fbf395065e77ebf03a 330 SUPERFAMILY SSF56349 61 316 6.08E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_02595 a9f81dcd00e514fbf395065e77ebf03a 330 Pfam PF00589 Phage integrase family 164 306 1.1E-19 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_14480 4f782ee4f58cca8bda72c7f15c792913 274 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 21 258 8.0E-81 T 11-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 BED32_14480 4f782ee4f58cca8bda72c7f15c792913 274 SUPERFAMILY SSF53474 19 260 1.91E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_14480 4f782ee4f58cca8bda72c7f15c792913 274 Pfam PF12697 Alpha/beta hydrolase family 24 252 1.7E-15 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_14480 4f782ee4f58cca8bda72c7f15c792913 274 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 19 259 34.501 T 11-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 BED32_14480 4f782ee4f58cca8bda72c7f15c792913 274 Gene3D G3DSA:3.40.50.1820 14 260 7.9E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 6 330 9.8E-108 T 11-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 Hamap MF_00540 Adenosine deaminase [add]. 1 331 52.568 T 11-10-2018 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 Pfam PF00962 Adenosine/AMP deaminase 6 327 6.6E-95 T 11-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 Gene3D G3DSA:3.20.20.140 4 332 1.1E-96 T 11-10-2018 BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 SUPERFAMILY SSF51556 5 327 1.6E-74 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_11455 f056c1b664c3f9f724e2b1706ee00205 332 ProSitePatterns PS00485 Adenosine and AMP deaminase signature. 274 280 - T 11-10-2018 IPR006650 Adenosine/AMP deaminase active site GO:0009168|GO:0019239 Reactome: R-HSA-74217 BED32_13400 438db2160f2662781d979a2acb98cfb3 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 1.3E-51 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE BED32_13400 438db2160f2662781d979a2acb98cfb3 109 Pfam PF04358 DsrC like protein 3 109 1.2E-47 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE BED32_13400 438db2160f2662781d979a2acb98cfb3 109 SUPERFAMILY SSF69721 2 109 3.01E-43 T 11-10-2018 IPR025526 DsrC-like domain superfamily BED32_13400 438db2160f2662781d979a2acb98cfb3 109 Gene3D G3DSA:1.10.10.370 39 109 1.6E-32 T 11-10-2018 BED32_13400 438db2160f2662781d979a2acb98cfb3 109 Gene3D G3DSA:3.30.1420.10 1 37 2.5E-13 T 11-10-2018 BED32_13400 438db2160f2662781d979a2acb98cfb3 109 PIRSF PIRSF006223 2 109 3.9E-48 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 180 6.5E-60 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 Hamap MF_01437 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [pgsA]. 1 182 32.682 T 11-10-2018 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 PIRSF PIRSF000847 1 181 1.3E-43 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 3.4E-17 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 BED32_09615 69b9eb77f98564814a2ce27dcaf4c6f6 182 Gene3D G3DSA:1.20.120.1760 4 177 5.3E-14 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1048 0.0 T 11-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.70.1430 38 821 0.0 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82866 296 497 6.54E-49 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82714 182 272 3.66E-21 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82866 807 1032 4.71E-45 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 622 636 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 3.3E-115 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.70.1430 570 674 0.0 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.70.1320 133 330 0.0 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.2090.10 180 277 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:1.20.1640.10 8 515 0.0 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.2090.10 725 813 0.0 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82693 38 132 5.75E-27 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:1.20.1640.10 516 1026 0.0 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82693 135 330 3.92E-28 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82693 566 670 1.67E-32 T 11-10-2018 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1029 0.0 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 SUPERFAMILY SSF82714 724 811 1.44E-20 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_06245 b8f7a0dab23681a289f13bd0d663a590 1050 Gene3D G3DSA:3.30.70.1440 675 865 0.0 T 11-10-2018 BED32_12810 33df2b0d2ad224e6ac68cab0f9fc0d9d 500 PIRSF PIRSF006060 442 500 4.4 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_12810 33df2b0d2ad224e6ac68cab0f9fc0d9d 500 PIRSF PIRSF006060 1 462 2.5E-46 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_12810 33df2b0d2ad224e6ac68cab0f9fc0d9d 500 Pfam PF13520 Amino acid permease 9 440 2.2E-66 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 SUPERFAMILY SSF55973 3 109 2.08E-47 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 PIRSF PIRSF000497 1 381 1.4E-174 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 5.1E-70 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 SUPERFAMILY SSF55973 112 232 2.71E-52 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 380 7.4E-200 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Gene3D G3DSA:3.30.300.10 11 270 1.4E-180 T 11-10-2018 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Gene3D G3DSA:3.30.300.10 5 233 1.4E-180 T 11-10-2018 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 4 101 2.9E-43 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.743 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 1.2E-45 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 Gene3D G3DSA:3.30.300.10 103 372 1.4E-180 T 11-10-2018 BED32_04420 143a95f1cd2a3a5b94a35a021eeb6cd3 384 SUPERFAMILY SSF55973 233 382 7.46E-72 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 Gene3D G3DSA:3.20.20.70 2 317 5.4E-148 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 ProSitePatterns PS00958 Transaldolase active site. 129 146 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 14 313 9.7E-101 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 Hamap MF_00492 Transaldolase [tal]. 2 317 51.789 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 SUPERFAMILY SSF51569 1 316 1.05E-115 T 11-10-2018 BED32_18205 2e1b3d37781036fbbc3ca0e628c18b13 317 TIGRFAM TIGR00874 talAB: transaldolase 4 316 2.0E-163 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_06025 ee641d4c138ee464f4517ef1c9a4612f 295 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 18.291 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BED32_06025 ee641d4c138ee464f4517ef1c9a4612f 295 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 281 9.5E-93 T 11-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 BED32_06025 ee641d4c138ee464f4517ef1c9a4612f 295 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 56 78 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site BED32_06025 ee641d4c138ee464f4517ef1c9a4612f 295 Gene3D G3DSA:1.10.357.140 13 168 2.6E-19 T 11-10-2018 BED32_06025 ee641d4c138ee464f4517ef1c9a4612f 295 Pfam PF01040 UbiA prenyltransferase family 18 266 8.8E-61 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 Pfam PF00005 ABC transporter 29 178 2.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 Pfam PF00005 ABC transporter 280 434 7.1E-17 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 Gene3D G3DSA:3.40.50.300 252 503 3.3E-37 T 11-10-2018 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 SUPERFAMILY SSF52540 254 492 1.81E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 Gene3D G3DSA:3.40.50.300 2 251 6.6E-59 T 11-10-2018 BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 SMART SM00382 288 483 2.2 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 SMART SM00382 38 233 5.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08445 aced84f8b397561cff6e46bb7633c07f 506 SUPERFAMILY SSF52540 12 236 2.13E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 Gene3D G3DSA:3.30.360.10 154 318 8.3E-128 T 11-10-2018 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 104 5.5E-33 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 316 4.5E-52 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 SUPERFAMILY SSF51735 1 174 6.87E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 SMART SM00846 3 155 3.9E-78 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 4 328 3.1E-182 T 11-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 Gene3D G3DSA:3.40.50.720 4 328 8.3E-128 T 11-10-2018 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 SUPERFAMILY SSF55347 155 317 1.31E-54 T 11-10-2018 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PIRSF PIRSF000149 1 337 2.2E-127 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 1.6E-29 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 1.6E-29 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 1.6E-29 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 272 287 1.6E-29 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 232 249 1.6E-29 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04445 d0905ddae968b10ecd4c442e297dc087 338 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 2 337 63.992 T 11-10-2018 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 7 147 1.7E-47 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 50 64 8.3E-32 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 83 96 8.3E-32 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 8.3E-32 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 123 137 8.3E-32 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 8.3E-32 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 330 4.2E-56 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 6 333 84.409 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 SUPERFAMILY SSF53671 2 334 1.27E-99 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 4.3E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 4.3E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 134 145 4.3E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 4.3E-26 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 Gene3D G3DSA:3.40.50.1370 6 329 3.9E-139 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 Gene3D G3DSA:3.40.50.1370 150 319 3.9E-139 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 BED32_18670 09595908c0bee41476c593ed545b4a7b 335 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 7 332 3.9E-136 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Gene3D G3DSA:3.40.120.10 208 302 5.0E-46 T 11-10-2018 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 195 302 1.3E-19 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 125 134 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 305 425 9.0E-30 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 465 523 1.9E-7 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Gene3D G3DSA:3.40.120.10 303 427 2.6E-35 T 11-10-2018 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 528 3.0E-303 T 11-10-2018 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6317|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-6981|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7900|MetaCyc: PWY-7902 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 25 165 4.1E-37 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Gene3D G3DSA:3.30.310.50 428 530 2.5E-34 T 11-10-2018 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 SUPERFAMILY SSF55957 417 528 2.59E-18 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 Gene3D G3DSA:3.40.120.10 1 203 1.8E-75 T 11-10-2018 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 SUPERFAMILY SSF53738 194 302 1.53E-9 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 SUPERFAMILY SSF53738 290 431 5.89E-32 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07620 5a6ad1e652677c4673175a76b83a8067 531 SUPERFAMILY SSF53738 11 220 4.94E-52 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 SUPERFAMILY SSF102114 6 313 2.49E-94 T 11-10-2018 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 Gene3D G3DSA:3.20.20.70 5 315 1.1E-135 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 Pfam PF04055 Radical SAM superfamily 50 202 2.5E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 2.4E-125 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 PIRSF PIRSF001619 1 319 6.7E-139 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 9.5E-21 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 SMART SM00876 220 312 8.5E-49 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 SMART SM00729 43 255 1.9E-41 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_07975 82df8916973f58ddc3874c98cc34ca81 350 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.398 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_16680 14cc384e545252f2ff7691a937fcb587 300 Gene3D G3DSA:3.40.190.10 92 290 1.7E-66 T 11-10-2018 BED32_16680 14cc384e545252f2ff7691a937fcb587 300 Gene3D G3DSA:3.40.190.10 164 264 1.7E-66 T 11-10-2018 BED32_16680 14cc384e545252f2ff7691a937fcb587 300 SUPERFAMILY SSF53850 91 293 1.03E-41 T 11-10-2018 BED32_16680 14cc384e545252f2ff7691a937fcb587 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_16680 14cc384e545252f2ff7691a937fcb587 300 Gene3D G3DSA:1.10.10.10 1 87 1.6E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16680 14cc384e545252f2ff7691a937fcb587 300 SUPERFAMILY SSF46785 5 85 1.47E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_16680 14cc384e545252f2ff7691a937fcb587 300 Pfam PF03466 LysR substrate binding domain 91 293 1.4E-40 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 31 656 0.0 T 11-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 224 241 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 437 460 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 252 275 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 539 558 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 292 312 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 PRINTS PR01607 Apyrase family signature 31 49 1.1E-31 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 Gene3D G3DSA:3.90.780.10 412 598 8.9E-50 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 Gene3D G3DSA:3.60.21.10 24 363 2.8E-146 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 SUPERFAMILY SSF55816 364 605 2.75E-38 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 Pfam PF02872 5'-nucleotidase, C-terminal domain 365 559 1.6E-20 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 ProSitePatterns PS00785 5'-nucleotidase signature 1. 33 45 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 ProSitePatterns PS00786 5'-nucleotidase signature 2. 118 129 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 SUPERFAMILY SSF56300 26 362 1.36E-86 T 11-10-2018 BED32_19110 01dd1ec7f72686bbc97ef7d15c5c5d48 657 Pfam PF00149 Calcineurin-like phosphoesterase 33 268 4.7E-11 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 Pfam PF00005 ABC transporter 359 509 3.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 Gene3D G3DSA:1.20.1560.10 2 328 1.2E-81 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 SMART SM00382 368 555 3.2E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13645 ffdea02809af95fa8b4295380c57f718 582 SUPERFAMILY SSF52540 332 580 6.58E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13645 ffdea02809af95fa8b4295380c57f718 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 581 9.8E-265 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 Gene3D G3DSA:3.40.50.300 329 581 2.1E-96 T 11-10-2018 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 SUPERFAMILY SSF90123 14 327 2.49E-75 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 Pfam PF00664 ABC transporter transmembrane region 28 297 1.0E-59 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_13645 ffdea02809af95fa8b4295380c57f718 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Gene3D G3DSA:2.40.50.140 630 723 3.5E-29 T 11-10-2018 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Pfam PF09371 Tex-like protein N-terminal domain 9 193 1.9E-68 T 11-10-2018 IPR018974 Tex-like protein, N-terminal BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Gene3D G3DSA:1.10.150.310 498 629 3.5E-50 T 11-10-2018 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Gene3D G3DSA:1.10.3500.10 112 497 5.0E-150 T 11-10-2018 IPR023323 Tex-like domain superfamily BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SUPERFAMILY SSF50249 637 721 4.77E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Pfam PF12836 Helix-hairpin-helix motif 490 554 3.2E-28 T 11-10-2018 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SMART SM00316 648 719 6.4E-26 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SMART SM00732 326 423 4.4E-35 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SUPERFAMILY SSF53098 322 468 6.07E-49 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Gene3D G3DSA:1.10.10.650 1 109 1.4E-39 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SUPERFAMILY SSF47781 469 557 2.0E-28 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SUPERFAMILY SSF158832 2 321 4.32E-118 T 11-10-2018 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Pfam PF16921 Tex protein YqgF-like domain 327 450 7.7E-49 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain BED32_01520 bb82c198d30779bbee5514102e1be10b 794 SUPERFAMILY SSF47781 559 631 1.09E-19 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Pfam PF00575 S1 RNA binding domain 649 719 1.3E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_01520 bb82c198d30779bbee5514102e1be10b 794 Gene3D G3DSA:3.30.420.140 325 450 5.0E-150 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 549 53.63 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 3.1E-126 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 550 6.2E-303 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Gene3D G3DSA:3.40.50.620 30 247 1.5E-106 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 2.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 2.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 2.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 2.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Gene3D G3DSA:3.90.800.10 101 209 1.5E-106 T 11-10-2018 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 SUPERFAMILY SSF52374 11 337 7.41E-101 T 11-10-2018 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Gene3D G3DSA:1.10.1160.10 261 339 3.0E-34 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 528 1.1E-62 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 SUPERFAMILY SSF50715 340 547 1.46E-80 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Gene3D G3DSA:2.40.240.10 463 547 3.7E-34 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_07570 37b0433f1b6160247f874cb8acc9b3e0 555 Gene3D G3DSA:2.40.240.10 348 462 3.6E-47 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 Pfam PF01019 Gamma-glutamyltranspeptidase 49 578 1.6E-181 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 Gene3D G3DSA:3.60.20.40 375 579 8.2E-68 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 375 399 - T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 34 551 6.2E-174 T 11-10-2018 IPR000101 Gamma-glutamyltranspeptidase GO:0006751|GO:0036374 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-4061|MetaCyc: PWY-5826|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7559 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 Gene3D G3DSA:1.10.246.130 262 374 1.7E-41 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 SUPERFAMILY SSF56235 25 587 1.72E-183 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 440 455 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 56 81 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 276 295 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 129 147 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 147 166 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 375 393 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 399 417 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 464 481 2.3E-77 T 11-10-2018 BED32_05890 97255e2b7483b3f6a94035e8a3e97975 587 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 246 262 2.3E-77 T 11-10-2018 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 Pfam PF00814 Glycoprotease family 24 307 4.8E-101 T 11-10-2018 IPR000905 Gcp-like domain BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 Gene3D G3DSA:3.30.420.40 3 315 2.3E-130 T 11-10-2018 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 63.098 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 11-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 SUPERFAMILY SSF53067 1 309 1.52E-42 T 11-10-2018 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 Gene3D G3DSA:3.30.420.40 129 293 2.3E-130 T 11-10-2018 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 1.7E-52 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 6.0E-133 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 BED32_03415 cb3cd30d417fc0578c335ee5ca80d4c2 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 306 5.6E-124 T 11-10-2018 IPR017861 Kae1/TsaD family BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 SUPERFAMILY SSF56327 168 437 1.13E-85 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 SUPERFAMILY SSF51735 4 164 3.28E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 195 415 3.3E-50 T 11-10-2018 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 Pfam PF02056 Family 4 glycosyl hydrolase 6 184 1.5E-60 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 Gene3D G3DSA:3.40.50.720 1 166 1.0E-55 T 11-10-2018 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 Gene3D G3DSA:3.90.110.10 167 439 1.9E-96 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 138 155 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 5 20 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 95 108 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 164 175 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 191 203 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 74 90 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_05775 a3c86ec24686723d9c43bda1dd375598 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 109 129 3.9E-48 T 11-10-2018 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 BED32_11215 2f75d204b7acae36dc8977ede55e8bc2 107 SMART SM00530 41 96 4.7E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11215 2f75d204b7acae36dc8977ede55e8bc2 107 Pfam PF01381 Helix-turn-helix 42 93 6.0E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11215 2f75d204b7acae36dc8977ede55e8bc2 107 SUPERFAMILY SSF47413 29 101 3.49E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11215 2f75d204b7acae36dc8977ede55e8bc2 107 Gene3D G3DSA:1.10.260.40 21 99 7.7E-16 T 11-10-2018 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 SUPERFAMILY SSF53850 89 289 9.59E-43 T 11-10-2018 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 Gene3D G3DSA:1.10.10.10 3 92 1.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 SUPERFAMILY SSF46785 5 89 5.9E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.5E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 Pfam PF03466 LysR substrate binding domain 89 287 1.8E-41 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 Gene3D G3DSA:3.40.190.290 93 289 2.7E-59 T 11-10-2018 BED32_18305 b21e3fda9abd9baa2b35b1bfb3533135 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.8E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 171 4.4E-58 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.5E-46 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Gene3D G3DSA:3.40.50.1220 190 360 4.5E-61 T 11-10-2018 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 570 4.4E-276 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 SUPERFAMILY SSF52518 2 180 2.36E-65 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 546 6.2E-50 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 SUPERFAMILY SSF52518 371 568 6.08E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Gene3D G3DSA:3.40.50.970 364 562 4.7E-68 T 11-10-2018 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 Gene3D G3DSA:3.40.50.970 1 180 6.7E-71 T 11-10-2018 BED32_17945 039487c067b4065830cdff9a44ebd4aa 575 SUPERFAMILY SSF52467 188 362 3.44E-63 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_14575 31bbe2dde16079458978d18ced7114b9 180 SUPERFAMILY SSF54862 33 155 4.6E-29 T 11-10-2018 BED32_14575 31bbe2dde16079458978d18ced7114b9 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 7 147 26.945 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14575 31bbe2dde16079458978d18ced7114b9 180 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_14575 31bbe2dde16079458978d18ced7114b9 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 16 137 2.0E-51 T 11-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14575 31bbe2dde16079458978d18ced7114b9 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 6.7E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_14575 31bbe2dde16079458978d18ced7114b9 180 Gene3D G3DSA:3.30.70.3270 33 173 7.0E-43 T 11-10-2018 BED32_12850 55ac99a8606fd6fa8b3dba6f037eba4a 103 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 98 28.489 T 11-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 BED32_12850 55ac99a8606fd6fa8b3dba6f037eba4a 103 Pfam PF06411 HdeA/HdeB family 8 91 6.3E-21 T 11-10-2018 IPR010486 HNS-dependent expression A/B BED32_12850 55ac99a8606fd6fa8b3dba6f037eba4a 103 Gene3D G3DSA:1.10.890.10 25 101 2.8E-34 T 11-10-2018 IPR038303 HNS-dependent expression A/B superfamily BED32_12850 55ac99a8606fd6fa8b3dba6f037eba4a 103 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 29 98 1.0E-24 T 11-10-2018 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 33 172 1.3E-37 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Gene3D G3DSA:3.40.50.11540 38 179 1.2E-13 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Pfam PF13375 RnfC Barrel sandwich hybrid domain 395 459 4.6E-17 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 SUPERFAMILY SSF46548 226 355 1.31E-11 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Pfam PF13534 4Fe-4S dicluster domain 276 336 5.6E-8 T 11-10-2018 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Gene3D G3DSA:3.10.20.600 182 246 4.7E-5 T 11-10-2018 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 SUPERFAMILY SSF142019 21 190 1.19E-44 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 PIRSF PIRSF036408 24 463 9.3E-182 T 11-10-2018 IPR017054 Propanediol utilization protein, PduS, predicted BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 276 287 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 SUPERFAMILY SSF142984 184 252 7.45E-14 T 11-10-2018 BED32_08860 4df0f45beec4f20202b9bab7a29fdc91 467 Pfam PF10531 SLBB domain 186 231 5.2E-11 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 SUPERFAMILY SSF51412 1 477 2.75E-123 T 11-10-2018 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 1.1E-194 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 Pfam PF00571 CBS domain 149 202 1.2E-4 T 11-10-2018 IPR000644 CBS domain BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 Pfam PF00571 CBS domain 95 140 1.1E-7 T 11-10-2018 IPR000644 CBS domain BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.7E-159 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 SUPERFAMILY SSF54631 95 203 1.15E-24 T 11-10-2018 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 Gene3D G3DSA:3.20.20.70 1 486 6.8E-205 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 PIRSF PIRSF000130 1 487 1.6E-194 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 SMART SM00116 158 206 4.5E-8 T 11-10-2018 IPR000644 CBS domain BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 SMART SM00116 96 144 7.2E-9 T 11-10-2018 IPR000644 CBS domain BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 83.67 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 BED32_15935 3a439c5dfebe2a4f4d15db6bd94c1c0c 487 SMART SM01240 7 473 0.0 T 11-10-2018 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 Gene3D G3DSA:3.40.50.2020 279 443 3.3E-161 T 11-10-2018 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.73 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 SUPERFAMILY SSF56235 2 259 5.83E-76 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 6.5E-162 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 PIRSF PIRSF000485 1 483 8.6E-170 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 Pfam PF00156 Phosphoribosyl transferase domain 292 394 8.3E-8 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 SUPERFAMILY SSF53271 252 485 1.08E-72 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 Gene3D G3DSA:3.60.20.10 2 414 3.3E-161 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_14740 069ead8f8713106d3dd6e93a320a83f7 505 Pfam PF13522 Glutamine amidotransferase domain 65 210 1.7E-15 T 11-10-2018 BED32_11020 88e59b023bea6845e7497c55584e812e 477 Hamap MF_01878 Dipeptide and tripeptide permease A [dtpA]. 1 465 50.034 T 11-10-2018 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A GO:0006857|GO:0016020|GO:1904680 BED32_11020 88e59b023bea6845e7497c55584e812e 477 Gene3D G3DSA:1.20.1250.20 1 462 1.1E-109 T 11-10-2018 BED32_11020 88e59b023bea6845e7497c55584e812e 477 Pfam PF00854 POT family 65 421 1.7E-87 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BED32_11020 88e59b023bea6845e7497c55584e812e 477 SUPERFAMILY SSF103473 6 463 8.02E-29 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_11020 88e59b023bea6845e7497c55584e812e 477 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 128 140 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BED32_11020 88e59b023bea6845e7497c55584e812e 477 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 2 461 1.1E-135 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BED32_15265 4d0be2c2667a070a75579259088104b1 409 Pfam PF01566 Natural resistance-associated macrophage protein 38 384 1.6E-122 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 TIGRFAM TIGR01197 nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 377 3.8E-96 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 299 318 1.5E-30 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 125 144 1.5E-30 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 150 171 1.5E-30 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 200 223 1.5E-30 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 PRINTS PR00447 Natural resistance-associated macrophage protein signature 97 123 1.5E-30 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_15265 4d0be2c2667a070a75579259088104b1 409 Hamap MF_00221 Divalent metal cation transporter MntH [mntH]. 1 409 36.74 T 11-10-2018 IPR001046 NRAMP family GO:0016020|GO:0030001|GO:0046873 Reactome: R-HSA-425410 BED32_09900 a2e8315c6e353ecd013d729189ab0461 194 SUPERFAMILY SSF55729 12 186 5.04E-42 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_09900 a2e8315c6e353ecd013d729189ab0461 194 Pfam PF13302 Acetyltransferase (GNAT) domain 17 162 6.9E-18 T 11-10-2018 IPR000182 GNAT domain BED32_09900 a2e8315c6e353ecd013d729189ab0461 194 Gene3D G3DSA:3.40.630.30 10 191 4.6E-46 T 11-10-2018 BED32_20690 27dfe0829be747bef011f658744edb22 649 Gene3D G3DSA:1.20.1440.210 135 245 1.3E-10 T 11-10-2018 BED32_20690 27dfe0829be747bef011f658744edb22 649 Pfam PF00672 HAMP domain 310 358 2.1E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_20690 27dfe0829be747bef011f658744edb22 649 Gene3D G3DSA:1.20.1440.210 57 272 1.3E-10 T 11-10-2018 BED32_20690 27dfe0829be747bef011f658744edb22 649 SUPERFAMILY SSF58104 330 612 4.32E-74 T 11-10-2018 BED32_20690 27dfe0829be747bef011f658744edb22 649 SMART SM00283 363 610 8.3E-89 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 SMART SM00304 310 362 7.3E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_20690 27dfe0829be747bef011f658744edb22 649 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 422 577 3.5E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 384 413 7.1E-59 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 461 488 7.1E-59 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 490 519 7.1E-59 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 538 567 7.1E-59 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_20690 27dfe0829be747bef011f658744edb22 649 SMART SM01358 39 288 2.4E-50 T 11-10-2018 IPR032255 Helical bimodular sensor domain BED32_20690 27dfe0829be747bef011f658744edb22 649 Pfam PF16591 Helical bimodular sensor domain 57 278 1.9E-16 T 11-10-2018 IPR032255 Helical bimodular sensor domain BED32_20690 27dfe0829be747bef011f658744edb22 649 Gene3D G3DSA:1.10.287.950 309 612 1.0E-92 T 11-10-2018 BED32_06235 a287cbf730e1fe26aa312f565f1222db 391 SUPERFAMILY SSF51419 34 268 8.63E-22 T 11-10-2018 IPR029066 PLP-binding barrel BED32_06235 a287cbf730e1fe26aa312f565f1222db 391 Gene3D G3DSA:3.20.20.10 99 251 4.4E-149 T 11-10-2018 IPR029066 PLP-binding barrel BED32_06235 a287cbf730e1fe26aa312f565f1222db 391 Gene3D G3DSA:2.40.37.30 8 379 4.4E-149 T 11-10-2018 BED32_06235 a287cbf730e1fe26aa312f565f1222db 391 Pfam PF01168 Alanine racemase, N-terminal domain 33 261 8.8E-16 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_18800 01198238a3c257277143ad0243f93656 388 SUPERFAMILY SSF48230 63 338 2.65E-55 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_18800 01198238a3c257277143ad0243f93656 388 Pfam PF05426 Alginate lyase 56 335 2.7E-76 T 11-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 BED32_18800 01198238a3c257277143ad0243f93656 388 Gene3D G3DSA:1.50.10.100 13 387 2.4E-119 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 Pfam PF00571 CBS domain 367 416 4.0E-5 T 11-10-2018 IPR000644 CBS domain BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 Pfam PF03471 Transporter associated domain 431 508 1.7E-17 T 11-10-2018 IPR005170 Transporter-associated domain BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 Gene3D G3DSA:3.30.465.10 434 509 1.8E-16 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 SMART SM01091 428 509 8.8E-22 T 11-10-2018 IPR005170 Transporter-associated domain BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 SUPERFAMILY SSF56176 430 511 1.28E-17 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 SUPERFAMILY SSF54631 285 419 9.1E-24 T 11-10-2018 BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 Gene3D G3DSA:3.10.580.10 278 433 6.1E-44 T 11-10-2018 BED32_12695 0f6f04a187a44a70c3363076e75b8856 514 Pfam PF03741 Integral membrane protein TerC family 14 203 2.3E-48 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BED32_15455 edd18c11c970dcf41fedd312a80ecb8d 137 Pfam PF04076 Bacterial OB fold (BOF) protein 30 135 8.1E-36 T 11-10-2018 IPR005220 Bacterial OB-fold BED32_15455 edd18c11c970dcf41fedd312a80ecb8d 137 Gene3D G3DSA:2.40.50.200 27 137 1.3E-42 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily BED32_15455 edd18c11c970dcf41fedd312a80ecb8d 137 TIGRFAM TIGR00156 TIGR00156: TIGR00156 family protein 2 136 3.1E-43 T 11-10-2018 IPR016052 Bacteriophage 933W, L0136 BED32_15455 edd18c11c970dcf41fedd312a80ecb8d 137 SUPERFAMILY SSF101756 40 135 3.53E-35 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily BED32_03445 e0bc60d6beb491b2b8be3834f8363ead 435 Pfam PF01928 CYTH domain 4 196 1.0E-28 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BED32_03445 e0bc60d6beb491b2b8be3834f8363ead 435 SUPERFAMILY SSF55154 1 213 3.76E-52 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 BED32_03445 e0bc60d6beb491b2b8be3834f8363ead 435 Gene3D G3DSA:2.40.320.10 1 200 1.2E-33 T 11-10-2018 BED32_03445 e0bc60d6beb491b2b8be3834f8363ead 435 SMART SM01118 2 202 6.7E-37 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 1 214 8.1E-79 T 11-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 SUPERFAMILY SSF51569 1 216 1.36E-61 T 11-10-2018 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 206 1.4E-41 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 Gene3D G3DSA:3.20.20.70 1 219 2.0E-74 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_11855 4162f895d86f2ee613966a7498c970d5 221 ProSitePatterns PS00958 Transaldolase active site. 82 99 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 11-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 SUPERFAMILY SSF53659 430 754 2.67E-91 T 11-10-2018 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Gene3D G3DSA:3.40.50.10380 1 160 5.9E-68 T 11-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 SMART SM01274 18 151 2.7E-79 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Gene3D G3DSA:3.40.50.10750 573 727 7.4E-93 T 11-10-2018 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 SMART SM00919 163 401 2.2E-141 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 SUPERFAMILY SSF51735 163 453 2.6E-86 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Gene3D G3DSA:3.40.50.720 161 446 1.6E-81 T 11-10-2018 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Gene3D G3DSA:3.40.50.10950 447 751 7.4E-93 T 11-10-2018 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 PIRSF PIRSF036684 1 758 0.0 T 11-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Pfam PF01515 Phosphate acetyl/butaryl transferase 430 751 4.1E-99 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 SUPERFAMILY SSF53223 10 161 2.09E-52 T 11-10-2018 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Pfam PF00390 Malic enzyme, N-terminal domain 19 151 3.7E-27 T 11-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 BED32_15480 86a6d2e0fdb7ae39bf02e5aca924b568 759 Pfam PF03949 Malic enzyme, NAD binding domain 165 359 5.1E-17 T 11-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 Pfam PF00107 Zinc-binding dehydrogenase 174 301 4.9E-28 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 Gene3D G3DSA:3.90.180.10 21 328 7.2E-120 T 11-10-2018 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 Hamap MF_00627 L-threonine 3-dehydrogenase [tdh]. 1 340 60.4 T 11-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 SUPERFAMILY SSF50129 1 173 5.17E-54 T 11-10-2018 IPR011032 GroES-like superfamily BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 Gene3D G3DSA:3.40.50.720 153 286 7.2E-120 T 11-10-2018 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 SUPERFAMILY SSF51735 141 305 6.05E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 SMART SM00829 12 338 2.2E-6 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 TIGRFAM TIGR00692 tdh: L-threonine 3-dehydrogenase 3 340 7.4E-183 T 11-10-2018 IPR004627 L-threonine 3-dehydrogenase GO:0006567|GO:0008270|GO:0008743|GO:0055114 KEGG: 00260+1.1.1.103|MetaCyc: PWY-7378 BED32_20945 a269ff587f5760d5fa18a32c0372d172 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 134 4.5E-32 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_01965 58c42f57a3daae6651d63045c445eb25 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 2.5E-26 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01965 58c42f57a3daae6651d63045c445eb25 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 8.8E-20 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain BED32_01965 58c42f57a3daae6651d63045c445eb25 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site BED32_01965 58c42f57a3daae6651d63045c445eb25 59 PIRSF PIRSF002211 1 59 3.5E-28 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01965 58c42f57a3daae6651d63045c445eb25 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 22.06 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01965 58c42f57a3daae6651d63045c445eb25 59 Gene3D G3DSA:3.30.1390.20 1 59 7.9E-27 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BED32_01965 58c42f57a3daae6651d63045c445eb25 59 SUPERFAMILY SSF55129 3 59 1.7E-21 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 SUPERFAMILY SSF53850 88 298 1.09E-28 T 11-10-2018 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.2E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 Pfam PF03466 LysR substrate binding domain 87 296 3.8E-30 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 SUPERFAMILY SSF46785 1 87 3.99E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-13 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 Gene3D G3DSA:3.40.190.290 90 300 7.5E-28 T 11-10-2018 BED32_11025 cae4c3bb6ee3f8117453f048ce764ba0 301 Gene3D G3DSA:1.10.10.10 1 83 7.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 Pfam PF00128 Alpha amylase, catalytic domain 228 605 1.1E-36 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 SMART SM00642 195 646 1.9E-77 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 SUPERFAMILY SSF51445 178 655 5.8E-75 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 PIRSF PIRSF036917 1 685 0.0 T 11-10-2018 IPR014635 Alpha-amylase, MalS type GO:0004556|GO:0005509|GO:0030980|GO:0042597|GO:0051692 KEGG: 00500+3.2.1.1 BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 Gene3D G3DSA:3.20.20.80 426 653 1.5E-31 T 11-10-2018 BED32_20795 2e5a2a7856f0b72e3b0ba41b25bcf335 687 Gene3D G3DSA:3.20.20.80 184 405 4.7E-46 T 11-10-2018 BED32_01125 b9c99a8631e8cf21ac47323e02a39a3e 280 SUPERFAMILY SSF53335 9 279 1.37E-99 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_01125 b9c99a8631e8cf21ac47323e02a39a3e 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 1.2E-111 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BED32_01125 b9c99a8631e8cf21ac47323e02a39a3e 280 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 241 247 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_01125 b9c99a8631e8cf21ac47323e02a39a3e 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.979 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 BED32_01125 b9c99a8631e8cf21ac47323e02a39a3e 280 Gene3D G3DSA:3.40.50.150 1 280 2.0E-119 T 11-10-2018 BED32_19950 9757e9561d3b1efa636ee28b822ecd5c 177 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 BED32_19950 9757e9561d3b1efa636ee28b822ecd5c 177 SUPERFAMILY SSF52218 1 164 5.39E-33 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_19950 9757e9561d3b1efa636ee28b822ecd5c 177 Pfam PF12724 Flavodoxin domain 4 151 7.7E-54 T 11-10-2018 IPR026816 Flavodoxin domain BED32_19950 9757e9561d3b1efa636ee28b822ecd5c 177 Gene3D G3DSA:3.40.50.360 1 111 2.2E-13 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.907 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SUPERFAMILY SSF81767 227 368 3.79E-45 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SMART SM00957 6 402 0.0 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SUPERFAMILY SSF81886 620 892 1.31E-82 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 101 115 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 63 87 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 170 190 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 339 361 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 376 393 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 117 127 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 PRINTS PR00906 SecA protein signature 413 426 1.4E-73 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 ProSitePatterns PS01312 SecA family signature. 500 515 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Gene3D G3DSA:3.90.1440.10 229 368 2.4E-176 T 11-10-2018 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Pfam PF01043 SecA preprotein cross-linking domain 232 358 8.6E-40 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Pfam PF07516 SecA Wing and Scaffold domain 617 830 2.1E-67 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Pfam PF02810 SEC-C motif 884 902 1.1E-10 T 11-10-2018 IPR004027 SEC-C motif BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Pfam PF07517 SecA DEAD-like domain 7 402 1.9E-131 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Gene3D G3DSA:3.40.50.300 417 620 1.6E-86 T 11-10-2018 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Gene3D G3DSA:3.40.50.300 22 415 2.4E-176 T 11-10-2018 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 Gene3D G3DSA:1.10.3060.10 621 833 8.5E-79 T 11-10-2018 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SMART SM00958 228 358 7.8E-86 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SUPERFAMILY SSF52540 5 415 1.19E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17835 8bb01e58b3fdeec61d087a9edddbff89 904 SUPERFAMILY SSF52540 416 618 3.77E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09495 6216d4150c442a5d90810d66b195b78d 900 SMART SM00831 23 96 1.0E-18 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 404 417 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 748 761 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 283 299 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 698 713 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 716 727 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 803 824 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 853 874 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 300 319 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 PRINTS PR01836 Magnesium-transporting ATPase signature 768 784 1.9E-88 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:3.40.50.1000 367 379 1.8E-82 T 11-10-2018 IPR023214 HAD superfamily BED32_09495 6216d4150c442a5d90810d66b195b78d 900 SUPERFAMILY SSF81665 26 897 1.44E-101 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 14 899 0.0 T 11-10-2018 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:2.70.150.10 41 252 1.8E-82 T 11-10-2018 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:1.20.1110.10 71 366 1.8E-82 T 11-10-2018 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 SUPERFAMILY SSF56784 368 739 1.15E-34 T 11-10-2018 IPR036412 HAD-like superfamily BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Pfam PF00690 Cation transporter/ATPase, N-terminus 25 91 2.3E-16 T 11-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 372 378 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:3.40.1110.10 407 547 1.6E-77 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 614 729 8.9E-28 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 408 2.3E-19 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:1.20.1110.10 685 805 1.6E-77 T 11-10-2018 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Pfam PF00702 haloacid dehalogenase-like hydrolase 366 654 1.5E-18 T 11-10-2018 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Gene3D G3DSA:3.40.50.1000 548 684 1.6E-77 T 11-10-2018 IPR023214 HAD superfamily BED32_09495 6216d4150c442a5d90810d66b195b78d 900 SUPERFAMILY SSF81653 160 270 2.22E-24 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Pfam PF00689 Cation transporting ATPase, C-terminus 723 891 1.6E-16 T 11-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 BED32_09495 6216d4150c442a5d90810d66b195b78d 900 Pfam PF00122 E1-E2 ATPase 143 350 1.8E-39 T 11-10-2018 BED32_17635 2726a962de99e714a6aa424cdd81e093 247 Pfam PF03749 Sugar fermentation stimulation protein 20 232 1.8E-76 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein BED32_17635 2726a962de99e714a6aa424cdd81e093 247 Gene3D G3DSA:3.40.1350.60 88 241 4.0E-55 T 11-10-2018 BED32_17635 2726a962de99e714a6aa424cdd81e093 247 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 12 236 1.6E-82 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein BED32_17635 2726a962de99e714a6aa424cdd81e093 247 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 8 241 55.559 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein BED32_17635 2726a962de99e714a6aa424cdd81e093 247 Gene3D G3DSA:2.40.50.580 8 87 5.2E-29 T 11-10-2018 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 21 384 57.61 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 SUPERFAMILY SSF51713 21 384 3.27E-164 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 Pfam PF01702 Queuine tRNA-ribosyltransferase 146 381 3.5E-93 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 23 388 1.6E-190 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 23 387 9.2E-180 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_05920 a7f334d880a4c75c1e2b7c0283b24b36 398 Gene3D G3DSA:3.20.20.105 14 387 2.8E-171 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 BED32_16770 e04882e20093a296695885de674eccfd 146 Pfam PF00472 RF-1 domain 15 138 3.7E-23 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_16770 e04882e20093a296695885de674eccfd 146 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 29 45 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_16770 e04882e20093a296695885de674eccfd 146 Gene3D G3DSA:3.30.160.20 9 146 5.5E-38 T 11-10-2018 BED32_16770 e04882e20093a296695885de674eccfd 146 SUPERFAMILY SSF75620 14 123 9.81E-14 T 11-10-2018 BED32_12380 b10adfe19bdecfb65d3dcd79b9f5af4d 155 ProDom PD460230 MEMBRANE STORAGE INNER HAEMIN SYSTEM HMSS PGA BIOFILM PGAD TRANSMEMBRANE 1 137 2.0E-47 T 11-10-2018 BED32_12380 b10adfe19bdecfb65d3dcd79b9f5af4d 155 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 5 138 1.0E-33 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BED32_12380 b10adfe19bdecfb65d3dcd79b9f5af4d 155 Pfam PF13994 PgaD-like protein 5 134 7.4E-32 T 11-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 BED32_14865 ccd07625685e67d0a46c5fa1131f66e4 464 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 372 431 0.002 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_14865 ccd07625685e67d0a46c5fa1131f66e4 464 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 113 212 4.0E-51 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_14865 ccd07625685e67d0a46c5fa1131f66e4 464 Gene3D G3DSA:2.40.170.10 85 464 6.2E-65 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 BED32_14865 ccd07625685e67d0a46c5fa1131f66e4 464 SUPERFAMILY SSF56935 85 464 1.41E-91 T 11-10-2018 BED32_14865 ccd07625685e67d0a46c5fa1131f66e4 464 Pfam PF02264 LamB porin 87 464 1.5E-76 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Gene3D G3DSA:3.30.70.1450 289 364 2.7E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 SUPERFAMILY SSF116726 290 359 1.1E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 553 55.426 T 11-10-2018 IPR023018 Transport protein YidE, putative BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Pfam PF02080 TrkA-C domain 293 358 1.0E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Pfam PF06826 Predicted Permease Membrane Region 374 546 6.7E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Pfam PF06826 Predicted Permease Membrane Region 10 179 3.3E-46 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 166 1.2E-43 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 379 533 8.6E-49 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 Gene3D G3DSA:3.30.70.1450 198 274 2.6E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_20805 f92b5dfbb7ea22259576e1b5c14aebfb 553 SUPERFAMILY SSF116726 206 271 4.45E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_03625 319eb033fbba651500cd57031bfa006a 414 Gene3D G3DSA:3.30.450.380 4 154 2.4E-39 T 11-10-2018 BED32_03625 319eb033fbba651500cd57031bfa006a 414 Pfam PF00437 Type II/IV secretion system protein 60 335 2.5E-79 T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_03625 319eb033fbba651500cd57031bfa006a 414 SUPERFAMILY SSF52540 39 342 4.52E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03625 319eb033fbba651500cd57031bfa006a 414 Gene3D G3DSA:3.40.50.300 157 408 6.4E-72 T 11-10-2018 BED32_03385 36944fc2702f3a792b6436f28a41e332 443 PIRSF PIRSF016719 3 321 9.3E-64 T 11-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 BED32_03385 36944fc2702f3a792b6436f28a41e332 443 PIRSF PIRSF016719 349 443 16.0 T 11-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 BED32_03385 36944fc2702f3a792b6436f28a41e332 443 Gene3D G3DSA:3.40.50.12170 24 443 3.4E-96 T 11-10-2018 BED32_03385 36944fc2702f3a792b6436f28a41e332 443 Pfam PF07075 Protein of unknown function (DUF1343) 47 442 1.6E-97 T 11-10-2018 IPR008302 Uncharacterised conserved protein UCP016719 BED32_10140 f48dc5d8438881947cdfc66d33612514 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 322 54.461 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 BED32_10140 f48dc5d8438881947cdfc66d33612514 323 SUPERFAMILY SSF53335 91 323 2.52E-33 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_10140 f48dc5d8438881947cdfc66d33612514 323 Gene3D G3DSA:3.40.50.150 90 323 2.1E-21 T 11-10-2018 BED32_10140 f48dc5d8438881947cdfc66d33612514 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 1.8E-165 T 11-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like BED32_10140 f48dc5d8438881947cdfc66d33612514 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 8 321 3.2E-146 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 Pfam PF02609 Exonuclease VII small subunit 15 65 1.1E-19 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 SUPERFAMILY SSF116842 9 75 7.85E-21 T 11-10-2018 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 14 74 16.188 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 Gene3D G3DSA:1.10.287.1040 9 84 1.1E-24 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 14 69 1.7E-22 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 54 1.0E-15 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BED32_05995 5e6d5945ccfc01b1f0ec74c9d72fa041 84 PIRSF PIRSF006488 2 84 6.0E-24 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 SMART SM00518 3 279 1.1E-130 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 276 2.3E-108 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 Gene3D G3DSA:3.20.20.150 1 280 1.9E-110 T 11-10-2018 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.345 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 BED32_14055 77c79b0e532985331b323c78ca99d33e 281 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 4.2E-42 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BED32_14055 77c79b0e532985331b323c78ca99d33e 281 SUPERFAMILY SSF51658 1 278 4.06E-100 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Pfam PF13237 4Fe-4S dicluster domain 373 427 3.9E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Gene3D G3DSA:3.30.70.20 372 446 2.1E-11 T 11-10-2018 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 618 229.077 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 139 283 8.1E-48 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 377 388 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Gene3D G3DSA:3.40.50.11540 144 280 2.4E-12 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Pfam PF10531 SLBB domain 296 344 5.4E-11 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 416 427 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 SUPERFAMILY SSF46548 336 444 1.88E-21 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 445 1.3E-179 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 115 1.8E-28 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain BED32_11545 bd4b4f6a932ce005357f62642e2f1ed2 618 SUPERFAMILY SSF142019 94 303 8.63E-58 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_09100 3e17d5923a8c35d712aeb576bc92e5fb 86 Gene3D G3DSA:2.60.200.60 15 85 2.5E-12 T 11-10-2018 BED32_09100 3e17d5923a8c35d712aeb576bc92e5fb 86 Pfam PF05488 PAAR motif 14 75 9.4E-10 T 11-10-2018 IPR008727 PAAR motif BED32_09100 3e17d5923a8c35d712aeb576bc92e5fb 86 Pfam PF05488 PAAR motif 47 86 1.2E-6 T 11-10-2018 IPR008727 PAAR motif BED32_12975 142b58018e53b265887ee7211d894c2a 417 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 30 413 1.9E-117 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BED32_12975 142b58018e53b265887ee7211d894c2a 417 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 304 323 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BED32_12975 142b58018e53b265887ee7211d894c2a 417 SMART SM01329 29 413 4.9E-181 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BED32_12975 142b58018e53b265887ee7211d894c2a 417 SUPERFAMILY SSF53659 4 417 9.22E-149 T 11-10-2018 BED32_12975 142b58018e53b265887ee7211d894c2a 417 Gene3D G3DSA:3.40.718.10 1 417 1.6E-186 T 11-10-2018 BED32_12975 142b58018e53b265887ee7211d894c2a 417 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 1 417 8.7E-235 T 11-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 BED32_20760 85659d668cf9985127f15e3d739a5ee4 154 Pfam PF13673 Acetyltransferase (GNAT) domain 63 150 5.8E-14 T 11-10-2018 IPR000182 GNAT domain BED32_20760 85659d668cf9985127f15e3d739a5ee4 154 Gene3D G3DSA:3.40.630.30 1 151 4.0E-31 T 11-10-2018 BED32_20760 85659d668cf9985127f15e3d739a5ee4 154 SUPERFAMILY SSF55729 1 140 5.83E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 87 166 6.7E-38 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 SUPERFAMILY SSF46767 86 169 4.45E-34 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 Gene3D G3DSA:1.10.10.10 86 169 6.3E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 21 167 41.051 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 9 83 6.2E-12 T 11-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 137 143 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 88 167 1.7E-34 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_11285 62769790893e27bbba9bc82d11dac9a4 172 SUPERFAMILY SSF53155 7 92 5.89E-6 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BED32_16365 623f87a69d56f7679304f74c944ca958 160 Gene3D G3DSA:2.40.280.10 7 134 9.9E-48 T 11-10-2018 IPR023620 Small protein B BED32_16365 623f87a69d56f7679304f74c944ca958 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 122 3.0E-56 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 BED32_16365 623f87a69d56f7679304f74c944ca958 160 ProSitePatterns PS01317 SsrA-binding protein. 32 44 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site BED32_16365 623f87a69d56f7679304f74c944ca958 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 160 74.997 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 BED32_16365 623f87a69d56f7679304f74c944ca958 160 Pfam PF01668 SmpB protein 14 157 5.5E-59 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 BED32_16365 623f87a69d56f7679304f74c944ca958 160 SUPERFAMILY SSF74982 8 138 1.57E-51 T 11-10-2018 IPR023620 Small protein B BED32_16365 623f87a69d56f7679304f74c944ca958 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 156 4.3E-55 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 Gene3D G3DSA:2.10.109.10 80 202 8.4E-47 T 11-10-2018 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 Gene3D G3DSA:1.10.10.10 1 70 3.2E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 Pfam PF01726 LexA DNA binding domain 1 65 2.5E-29 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 SUPERFAMILY SSF51306 76 198 2.96E-38 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 150 162 7.4E-14 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 122 133 7.4E-14 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 111 121 7.4E-14 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 Pfam PF00717 Peptidase S24-like 114 179 5.7E-15 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 199 8.4E-84 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 Hamap MF_00015 LexA repressor [lexA]. 3 199 32.406 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 BED32_02235 7a6385ef19f52a2a36812da8024a12c5 202 SUPERFAMILY SSF46785 3 69 6.67E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 TIGRFAM TIGR00694 thiM: hydroxyethylthiazole kinase 13 255 1.0E-83 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 SUPERFAMILY SSF53613 9 254 7.86E-57 T 11-10-2018 IPR029056 Ribokinase-like BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PIRSF PIRSF000513 8 259 1.5E-90 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 91 108 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 121 135 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 65 73 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 34 55 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 165 182 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 21 28 4.2E-39 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 15 258 29.403 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 Gene3D G3DSA:3.40.1190.20 6 259 5.7E-87 T 11-10-2018 IPR029056 Ribokinase-like BED32_04065 d2a9130aa0afc473175c23d6fcff76e7 259 Pfam PF02110 Hydroxyethylthiazole kinase family 13 255 9.1E-88 T 11-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 34 319 1.1E-16 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:2.40.50.100 207 241 1.7E-25 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:1.10.287.470 112 173 3.0E-6 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:1.10.287.470 78 111 3.7E-14 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:1.10.287.470 179 206 1.7E-25 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Hamap MF_01304 UPF0194 membrane protein YbhG [ybhG]. 2 328 51.177 T 11-10-2018 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG BED32_08055 2e352a39de8870c0bddd837822289b37 328 SUPERFAMILY SSF111369 178 324 7.98E-13 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:2.40.30.170 242 322 1.7E-25 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 Gene3D G3DSA:2.40.50.100 43 77 3.7E-14 T 11-10-2018 BED32_08055 2e352a39de8870c0bddd837822289b37 328 SUPERFAMILY SSF111369 41 119 1.2E-8 T 11-10-2018 BED32_00480 f38f149a8e357155ad55818276c81df4 269 Gene3D G3DSA:3.30.1240.10 87 193 6.9E-94 T 11-10-2018 BED32_00480 f38f149a8e357155ad55818276c81df4 269 SUPERFAMILY SSF56784 1 268 2.42E-77 T 11-10-2018 IPR036412 HAD-like superfamily BED32_00480 f38f149a8e357155ad55818276c81df4 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 11-10-2018 BED32_00480 f38f149a8e357155ad55818276c81df4 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 264 3.9E-69 T 11-10-2018 BED32_00480 f38f149a8e357155ad55818276c81df4 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 264 9.5E-67 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_00480 f38f149a8e357155ad55818276c81df4 269 Gene3D G3DSA:3.40.50.1000 5 265 6.9E-94 T 11-10-2018 IPR023214 HAD superfamily BED32_00480 f38f149a8e357155ad55818276c81df4 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 237 4.0E-29 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_18380 2a1d0044ab360d549158ad188472384f 529 SUPERFAMILY SSF52540 10 277 7.66E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18380 2a1d0044ab360d549158ad188472384f 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.193 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BED32_18380 2a1d0044ab360d549158ad188472384f 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 6.6E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 6.6E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 6.6E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 6.6E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 6.6E-11 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 SUPERFAMILY SSF50447 262 393 3.31E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_18380 2a1d0044ab360d549158ad188472384f 529 Gene3D G3DSA:3.40.50.300 72 379 3.4E-117 T 11-10-2018 BED32_18380 2a1d0044ab360d549158ad188472384f 529 Gene3D G3DSA:3.40.50.300 110 275 3.4E-117 T 11-10-2018 BED32_18380 2a1d0044ab360d549158ad188472384f 529 SUPERFAMILY SSF54980 393 468 8.27E-17 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_18380 2a1d0044ab360d549158ad188472384f 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_18380 2a1d0044ab360d549158ad188472384f 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 277 1.4E-45 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 1.6E-46 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal BED32_18380 2a1d0044ab360d549158ad188472384f 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 15 158 3.2E-18 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_18380 2a1d0044ab360d549158ad188472384f 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 6 529 0.0 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 BED32_18380 2a1d0044ab360d549158ad188472384f 529 Gene3D G3DSA:3.30.70.3280 390 529 1.2E-52 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily BED32_18380 2a1d0044ab360d549158ad188472384f 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 9.8E-12 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 14 427 1.2E-159 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Gene3D G3DSA:2.120.10.30 165 430 1.6E-115 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 SUPERFAMILY SSF52964 28 161 2.09E-40 T 11-10-2018 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Gene3D G3DSA:3.40.50.10070 19 164 8.5E-54 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 SUPERFAMILY SSF69304 155 428 9.15E-57 T 11-10-2018 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Pfam PF04052 TolB amino-terminal domain 23 122 1.7E-32 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Pfam PF07676 WD40-like Beta Propeller Repeat 237 272 1.9E-9 T 11-10-2018 IPR011659 WD40-like Beta Propeller BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Pfam PF07676 WD40-like Beta Propeller Repeat 199 223 2.0E-5 T 11-10-2018 IPR011659 WD40-like Beta Propeller BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Pfam PF07676 WD40-like Beta Propeller Repeat 369 397 0.0065 T 11-10-2018 IPR011659 WD40-like Beta Propeller BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Pfam PF07676 WD40-like Beta Propeller Repeat 282 315 9.3E-10 T 11-10-2018 IPR011659 WD40-like Beta Propeller BED32_07825 36d699c7471b1878edf4a321e078ec0b 430 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 4 426 50.17 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 BED32_08145 dfa0100deb01f0ac38d64e8bc52bfcca 533 Gene3D G3DSA:1.25.10.10 111 240 4.2E-8 T 11-10-2018 IPR011989 Armadillo-like helical BED32_08145 dfa0100deb01f0ac38d64e8bc52bfcca 533 Pfam PF13646 HEAT repeats 176 228 4.9E-7 T 11-10-2018 BED32_08145 dfa0100deb01f0ac38d64e8bc52bfcca 533 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 239 530 2.0E-129 T 11-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type BED32_08145 dfa0100deb01f0ac38d64e8bc52bfcca 533 SUPERFAMILY SSF48371 122 229 2.54E-10 T 11-10-2018 IPR016024 Armadillo-type fold BED32_08145 dfa0100deb01f0ac38d64e8bc52bfcca 533 Pfam PF02653 Branched-chain amino acid transport system / permease component 241 516 9.7E-50 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 19 154 1.3E-48 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 SUPERFAMILY SSF48452 26 141 1.55E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 Gene3D G3DSA:1.25.40.10 9 160 2.6E-62 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 PIRSF PIRSF003165 1 160 1.9E-55 T 11-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 71 93 3.2E-50 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 103 125 3.2E-50 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 22 45 3.2E-50 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 47 66 3.2E-50 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_00005 62022b8b61e8622f33b97db8a8f4c87f 160 Pfam PF07720 Tetratricopeptide repeat 36 69 5.9E-8 T 11-10-2018 IPR011716 Tetratricopeptide TPR-3 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 460 3.1E-262 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Gene3D G3DSA:2.40.10.170 2 75 7.4E-31 T 11-10-2018 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Gene3D G3DSA:3.40.50.300 76 344 1.4E-112 T 11-10-2018 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 460 56.737 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 333 342 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 SMART SM00382 142 405 1.2E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 SUPERFAMILY SSF52540 77 348 6.64E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Gene3D G3DSA:1.10.1140.10 345 460 4.4E-60 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 72 1.6E-21 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 342 3.8E-63 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 SUPERFAMILY SSF47917 345 459 2.09E-55 T 11-10-2018 BED32_21465 cc49e8b8d15fab9d192560c200530a47 460 SUPERFAMILY SSF50615 1 75 3.66E-25 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 256 289 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 170 5.8E-44 T 11-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 SUPERFAMILY SSF53218 180 325 3.01E-42 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_08370 70c4a1fc33929235e146696abf5f0732 411 SMART SM00852 183 320 1.9E-42 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Gene3D G3DSA:2.170.190.11 53 144 2.3E-142 T 11-10-2018 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 180 316 1.8E-32 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Pfam PF00994 Probable molybdopterin binding domain 183 319 5.2E-26 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_08370 70c4a1fc33929235e146696abf5f0732 411 SUPERFAMILY SSF63882 9 178 5.36E-54 T 11-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Gene3D G3DSA:3.90.105.10 29 177 2.3E-142 T 11-10-2018 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Gene3D G3DSA:3.40.980.10 178 330 2.3E-142 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_08370 70c4a1fc33929235e146696abf5f0732 411 SUPERFAMILY SSF63867 330 410 1.28E-22 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Gene3D G3DSA:2.40.340.10 331 401 2.3E-142 T 11-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08370 70c4a1fc33929235e146696abf5f0732 411 Pfam PF03454 MoeA C-terminal region (domain IV) 334 406 9.0E-18 T 11-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 Gene3D G3DSA:1.10.10.10 7 96 1.7E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.7E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 4.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 SUPERFAMILY SSF53850 94 297 8.32E-28 T 11-10-2018 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 Pfam PF03466 LysR substrate binding domain 92 294 2.7E-29 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 Gene3D G3DSA:3.40.190.10 101 291 1.5E-43 T 11-10-2018 BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 SUPERFAMILY SSF46785 3 83 3.25E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01280 dd44a5c2ba2b93a335782a2e5bb2b86b 306 Gene3D G3DSA:3.40.190.10 164 266 1.5E-43 T 11-10-2018 BED32_20300 fa9b84ab05ad7afd081882b9b61c1f2f 156 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 27 154 6.2E-15 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 BED32_20300 fa9b84ab05ad7afd081882b9b61c1f2f 156 Gene3D G3DSA:3.10.129.10 5 156 4.5E-48 T 11-10-2018 BED32_20300 fa9b84ab05ad7afd081882b9b61c1f2f 156 SUPERFAMILY SSF54637 13 155 4.33E-23 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_20300 fa9b84ab05ad7afd081882b9b61c1f2f 156 Pfam PF03061 Thioesterase superfamily 59 144 1.2E-14 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 282 7.4E-130 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 SUPERFAMILY SSF53328 88 281 7.85E-61 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 Gene3D G3DSA:3.40.50.170 86 282 5.6E-67 T 11-10-2018 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 Pfam PF01842 ACT domain 10 70 5.3E-7 T 11-10-2018 IPR002912 ACT domain BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 Gene3D G3DSA:3.30.70.260 3 84 1.8E-15 T 11-10-2018 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PIRSF PIRSF036480 6 282 7.2E-115 T 11-10-2018 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 Pfam PF00551 Formyl transferase 88 264 3.6E-53 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 SUPERFAMILY SSF55021 9 58 2.46E-8 T 11-10-2018 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 43 55 3.5E-68 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_12165 b6384d9ec1c1dac0032480c90e539073 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 282 46.094 T 11-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 Gene3D G3DSA:1.10.10.10 3 88 6.6E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 Pfam PF03466 LysR substrate binding domain 89 292 1.2E-40 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 3.9E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 SUPERFAMILY SSF46785 4 109 1.49E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 Gene3D G3DSA:3.40.190.290 91 293 6.3E-55 T 11-10-2018 BED32_02555 cee0a4d704f65f071ed7a9ffc095b163 303 SUPERFAMILY SSF53850 90 295 7.76E-42 T 11-10-2018 BED32_00205 a72393e9a9def4842a690b8bafa2f525 61 Pfam PF00665 Integrase core domain 6 59 4.8E-8 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_00205 a72393e9a9def4842a690b8bafa2f525 61 SUPERFAMILY SSF53098 5 59 1.46E-12 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00205 a72393e9a9def4842a690b8bafa2f525 61 Gene3D G3DSA:3.30.420.10 2 61 2.7E-7 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_17245 42ecb227f2889ab2191411285e7c47f0 101 Pfam PF13591 MerR HTH family regulatory protein 9 92 4.6E-25 T 11-10-2018 BED32_17245 42ecb227f2889ab2191411285e7c47f0 101 Gene3D G3DSA:1.10.1660.10 1 100 7.3E-29 T 11-10-2018 BED32_16595 20c1449ca5dd4cefa2ed28c670700439 143 SUPERFAMILY SSF69118 10 142 2.47E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_16595 20c1449ca5dd4cefa2ed28c670700439 143 Gene3D G3DSA:1.20.1290.10 2 143 6.5E-46 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_16595 20c1449ca5dd4cefa2ed28c670700439 143 Pfam PF02627 Carboxymuconolactone decarboxylase family 14 95 1.7E-14 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BED32_16595 20c1449ca5dd4cefa2ed28c670700439 143 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 77 7.3E-14 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 BED32_03245 84245dab7ae24eb4fa1f6b5368a940bb 469 Gene3D G3DSA:3.20.20.140 7 465 9.1E-203 T 11-10-2018 BED32_03245 84245dab7ae24eb4fa1f6b5368a940bb 469 Gene3D G3DSA:1.10.2020.10 46 137 9.1E-203 T 11-10-2018 BED32_03245 84245dab7ae24eb4fa1f6b5368a940bb 469 SUPERFAMILY SSF51556 3 465 5.1E-181 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_03245 84245dab7ae24eb4fa1f6b5368a940bb 469 Pfam PF02614 Glucuronate isomerase 1 465 5.3E-229 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BED32_03245 84245dab7ae24eb4fa1f6b5368a940bb 469 Hamap MF_00675 Uronate isomerase [uxaC]. 2 467 49.497 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 326 342 - T 11-10-2018 IPR013793 Porin, Gram-negative type, conserved site BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 Gene3D G3DSA:2.40.160.10 22 371 5.3E-150 T 11-10-2018 IPR023614 Porin domain superfamily BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 SUPERFAMILY SSF56935 22 371 4.45E-78 T 11-10-2018 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 Pfam PF00267 Gram-negative porin 27 371 1.0E-144 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 1.7E-17 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 96 106 1.7E-17 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 153 164 1.7E-17 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 343 1.7E-17 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 236 248 1.7E-17 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 96 118 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 242 259 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 151 173 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_08230 451bfab824dcbdcf5eae5a5238a5dc75 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 282 301 5.5E-65 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_05280 c2c669e6fd8cf1d3cf8492e1b6fee719 311 Pfam PF03837 RecT family 37 216 1.6E-36 T 11-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 BED32_06530 c2c669e6fd8cf1d3cf8492e1b6fee719 311 Pfam PF03837 RecT family 37 216 1.6E-36 T 11-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 34.062 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 Gene3D G3DSA:3.40.50.1360 7 207 6.2E-76 T 11-10-2018 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 SUPERFAMILY SSF100950 1 146 1.3E-47 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 4.5E-70 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 Gene3D G3DSA:3.30.70.260 125 196 6.2E-76 T 11-10-2018 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 4.1E-59 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 BED32_04490 3a7f97db6657f08e8f261c2588853cfc 220 SUPERFAMILY SSF75445 127 198 1.06E-23 T 11-10-2018 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 SMART SM00859 6 121 9.7E-35 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 SUPERFAMILY SSF55347 132 318 5.92E-51 T 11-10-2018 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 Gene3D G3DSA:3.30.360.10 130 314 1.2E-108 T 11-10-2018 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 PIRSF PIRSF000148 4 336 6.3E-97 T 11-10-2018 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 316 1.8E-35 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 120 3.4E-26 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 Gene3D G3DSA:3.40.50.720 7 328 1.2E-108 T 11-10-2018 BED32_14775 93ac818a35aeafda5662f7ad67d73e6b 336 SUPERFAMILY SSF51735 5 156 6.22E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 Gene3D G3DSA:3.10.105.10 283 498 2.2E-93 T 11-10-2018 BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 439 1.0E-64 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 Gene3D G3DSA:3.40.190.10 202 508 2.2E-93 T 11-10-2018 BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 Gene3D G3DSA:3.90.76.10 41 201 2.2E-93 T 11-10-2018 BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 SUPERFAMILY SSF53850 21 517 1.14E-96 T 11-10-2018 BED32_18680 e7c9c3a6d09f0b4d34cdc23015697194 522 PIRSF PIRSF002741 6 519 1.5E-60 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_13590 3c9f24a646a94722fff1ffe205a4ae9c 239 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 237 50.722 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 BED32_13590 3c9f24a646a94722fff1ffe205a4ae9c 239 Pfam PF04288 MukE-like family 10 236 2.9E-126 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 BED32_13590 3c9f24a646a94722fff1ffe205a4ae9c 239 Gene3D G3DSA:1.10.10.2260 88 195 1.7E-53 T 11-10-2018 BED32_13590 3c9f24a646a94722fff1ffe205a4ae9c 239 Gene3D G3DSA:1.10.10.2250 1 78 5.9E-39 T 11-10-2018 BED32_01225 e96de91dc274f210c50fa724e97c8642 327 SMART SM00954 49 179 3.5E-16 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_01225 e96de91dc274f210c50fa724e97c8642 327 Gene3D G3DSA:3.30.460.10 6 159 6.2E-17 T 11-10-2018 BED32_01225 e96de91dc274f210c50fa724e97c8642 327 Pfam PF04607 Region found in RelA / SpoT proteins 49 176 9.5E-16 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_01225 e96de91dc274f210c50fa724e97c8642 327 SUPERFAMILY SSF81301 27 211 8.66E-30 T 11-10-2018 BED32_04165 ba22abe7c237cbdd9578032682256cc1 317 SUPERFAMILY SSF53807 32 296 1.88E-66 T 11-10-2018 BED32_04165 ba22abe7c237cbdd9578032682256cc1 317 Gene3D G3DSA:3.40.50.1980 44 304 6.2E-93 T 11-10-2018 BED32_04165 ba22abe7c237cbdd9578032682256cc1 317 Pfam PF01497 Periplasmic binding protein 52 287 3.0E-33 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_04165 ba22abe7c237cbdd9578032682256cc1 317 Gene3D G3DSA:3.40.50.12260 182 287 6.2E-93 T 11-10-2018 BED32_07300 b14a822ff50044db9d077be9536aa509 349 SUPERFAMILY SSF53474 45 348 1.01E-43 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_07300 b14a822ff50044db9d077be9536aa509 349 Gene3D G3DSA:1.10.10.800 186 275 1.1E-88 T 11-10-2018 BED32_07300 b14a822ff50044db9d077be9536aa509 349 Pfam PF01738 Dienelactone hydrolase family 61 179 2.6E-7 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BED32_07300 b14a822ff50044db9d077be9536aa509 349 Gene3D G3DSA:3.40.50.1820 56 329 1.1E-88 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_04945 ce18a0d574dd04aecc799d3f1eebacb1 519 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 6 514 9.8E-255 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BED32_04945 ce18a0d574dd04aecc799d3f1eebacb1 519 Pfam PF04262 Glutamate-cysteine ligase 10 380 2.7E-172 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BED32_04945 ce18a0d574dd04aecc799d3f1eebacb1 519 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 519 227.543 T 11-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 BED32_04945 ce18a0d574dd04aecc799d3f1eebacb1 519 SUPERFAMILY SSF55931 4 514 2.55E-203 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 BED32_04945 ce18a0d574dd04aecc799d3f1eebacb1 519 Gene3D G3DSA:3.30.590.20 17 517 1.5E-189 T 11-10-2018 BED32_10800 dd574aaa25c770aa76b21c91b2d48cb9 140 Pfam PF03061 Thioesterase superfamily 50 127 1.3E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 BED32_10800 dd574aaa25c770aa76b21c91b2d48cb9 140 Hamap MF_01936 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [menI]. 1 136 42.808 T 11-10-2018 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI GO:0009234|GO:0061522 KEGG: 00130+3.1.2.28|MetaCyc: PWY-5837 BED32_10800 dd574aaa25c770aa76b21c91b2d48cb9 140 SUPERFAMILY SSF54637 20 138 4.27E-32 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_10800 dd574aaa25c770aa76b21c91b2d48cb9 140 Gene3D G3DSA:3.10.129.10 1 139 2.4E-59 T 11-10-2018 BED32_10800 dd574aaa25c770aa76b21c91b2d48cb9 140 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 135 5.0E-47 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 Pfam PF05860 haemagglutination activity domain 75 207 1.5E-34 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 Gene3D G3DSA:2.160.20.10 74 238 1.2E-69 T 11-10-2018 IPR012334 Pectin lyase fold BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 24 2.1E-7 T 11-10-2018 IPR024973 ESPR domain BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 SUPERFAMILY SSF51126 79 235 1.07E-46 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 107 203 3.8E-24 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_21975 46361a63a121dd2b7de7314d2d696cd6 239 SMART SM00912 88 208 6.4E-47 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 23 531 5.2E-251 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 SUPERFAMILY SSF51645 10 531 8.89E-190 T 11-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 Gene3D G3DSA:1.20.1220.12 411 532 1.1E-49 T 11-10-2018 BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 Gene3D G3DSA:3.20.20.360 2 410 2.7E-192 T 11-10-2018 BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 PIRSF PIRSF001363 2 532 7.1E-248 T 11-10-2018 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BED32_02120 f0ebedf7f3cf07eae0a97c405ecb394d 532 Pfam PF01274 Malate synthase 13 531 5.9E-208 T 11-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 TIGRFAM TIGR00038 efp: translation elongation factor P 6 187 1.1E-76 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 SUPERFAMILY SSF50104 6 64 5.78E-18 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 1.1E-22 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 PIRSF PIRSF005901 2 188 7.0E-67 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 50.091 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 1.0E-25 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 SUPERFAMILY SSF50249 67 128 7.71E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 7 62 6.8E-24 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Gene3D G3DSA:2.40.50.140 130 188 7.7E-28 T 11-10-2018 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Gene3D G3DSA:2.30.30.30 1 65 5.9E-27 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 Gene3D G3DSA:2.40.50.140 66 129 1.2E-30 T 11-10-2018 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 SUPERFAMILY SSF50249 130 187 1.88E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 SMART SM00841 131 186 3.0E-32 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BED32_19325 ec99c51f7cd3cc337fdc8b5dd681da85 188 SMART SM01185 69 123 7.5E-26 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 Pfam PF00171 Aldehyde dehydrogenase family 4 281 2.8E-14 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 323 344 - T 11-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 1 416 40.686 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 Gene3D G3DSA:3.40.309.10 222 374 2.9E-159 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 9 406 1.1E-184 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 Gene3D G3DSA:3.40.605.10 14 411 2.9E-159 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 SUPERFAMILY SSF53720 2 412 6.68E-111 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_05760 cea8106730bddb527e7e1c5bc8ac1861 417 PIRSF PIRSF000151 1 417 1.4E-170 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 Gene3D G3DSA:1.20.1560.10 13 321 4.3E-36 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 Pfam PF00005 ABC transporter 355 500 9.7E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 ProSitePatterns PS00211 ABC transporters family signature. 473 487 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 SMART SM00382 362 548 9.5E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 Pfam PF00664 ABC transporter transmembrane region 30 287 1.9E-9 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 SUPERFAMILY SSF90123 17 321 7.06E-43 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 Gene3D G3DSA:3.40.50.300 329 567 1.4E-64 T 11-10-2018 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 TIGRFAM TIGR01842 type_I_sec_PrtD: type I secretion system ATPase 20 562 8.0E-222 T 11-10-2018 IPR010128 ATPase, type I secretion system, PrtD GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 BED32_00655 326bb3fb8434634d46a8db189b3cedb4 601 SUPERFAMILY SSF52540 330 560 5.07E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01130 ed1f5bc5dd116881de9f71f75cfb0e0f 680 Pfam PF01432 Peptidase family M3 222 677 2.3E-167 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 BED32_01130 ed1f5bc5dd116881de9f71f75cfb0e0f 680 Gene3D G3DSA:1.10.1370.10 140 610 1.7E-266 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 BED32_01130 ed1f5bc5dd116881de9f71f75cfb0e0f 680 Gene3D G3DSA:1.10.1370.40 13 675 1.7E-266 T 11-10-2018 BED32_01130 ed1f5bc5dd116881de9f71f75cfb0e0f 680 SUPERFAMILY SSF55486 1 677 2.85E-213 T 11-10-2018 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 SUPERFAMILY SSF54686 3 133 4.84E-55 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 Gene3D G3DSA:3.90.1170.10 1 136 1.3E-55 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.821 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 9.2E-48 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 4.3E-60 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 1.0E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 1.0E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 1.0E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 1.0E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01910 d252f117c8daca16b432349f8e30f5bd 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 SUPERFAMILY SSF141673 5 133 5.36E-29 T 11-10-2018 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 298 362 4.6E-12 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 323 331 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 SUPERFAMILY SSF54292 284 367 4.72E-20 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 Pfam PF03476 MOSC N-terminal beta barrel domain 3 117 3.5E-29 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 Gene3D G3DSA:3.10.20.30 277 369 2.5E-16 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 SUPERFAMILY SSF50800 3 264 1.1E-16 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BED32_13525 e5acd489d9e14c40e4f834b541bad101 370 Pfam PF03473 MOSC domain 140 261 1.7E-28 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 21 368 74.62 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 Pfam PF04055 Radical SAM superfamily 124 293 4.3E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 Gene3D G3DSA:3.20.20.70 83 353 4.4E-114 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 Gene3D G3DSA:1.10.150.530 6 82 9.6E-30 T 11-10-2018 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 SUPERFAMILY SSF102114 120 338 1.09E-14 T 11-10-2018 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 PIRSF PIRSF006004 16 381 8.0E-147 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 BED32_16000 4a3c1c8cd7ed31e64af6576833917d74 388 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 19 373 4.3E-171 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Pfam PF01835 MG2 domain 402 493 2.9E-19 T 11-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 SUPERFAMILY SSF48239 1195 1451 5.16E-39 T 11-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 SMART SM01359 773 921 4.6E-37 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 SMART SM01360 986 1075 2.0E-18 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 774 921 2.1E-14 T 11-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Pfam PF00207 Alpha-2-macroglobulin family 993 1072 9.6E-8 T 11-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 PIRSF PIRSF038980 10 1678 0.0 T 11-10-2018 IPR026284 Alpha-2-macroglobulin domain protein, bacteria BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 303 395 5.7E-21 T 11-10-2018 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Gene3D G3DSA:1.50.10.20 1190 1455 3.0E-28 T 11-10-2018 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Gene3D G3DSA:2.60.40.1930 402 497 1.1E-6 T 11-10-2018 BED32_16020 11ded2ddfb77e4e7d6d6aaac1654f0fa 1678 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1200 1218 8.7E-5 T 11-10-2018 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming BED32_19640 ba0724f26a215147f2bbe8b050d7355c 486 Pfam PF04888 Secretion system effector C (SseC) like family 94 484 1.7E-55 T 11-10-2018 IPR006972 Secretion system effector C, SseC-like GO:0009405 BED32_00395 dceb250434c56390aad9af97568085b5 307 SUPERFAMILY SSF101801 230 301 8.37E-18 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_00395 dceb250434c56390aad9af97568085b5 307 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 39 301 5.1E-65 T 11-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 BED32_00395 dceb250434c56390aad9af97568085b5 307 Gene3D G3DSA:2.30.330.10 218 307 2.4E-34 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_00395 dceb250434c56390aad9af97568085b5 307 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 232 301 1.3E-16 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) BED32_00395 dceb250434c56390aad9af97568085b5 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 278 295 1.2E-14 T 11-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 BED32_00395 dceb250434c56390aad9af97568085b5 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 173 183 1.2E-14 T 11-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 BED32_00395 dceb250434c56390aad9af97568085b5 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 234 246 1.2E-14 T 11-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 BED32_00395 dceb250434c56390aad9af97568085b5 307 PRINTS PR01339 Type III secretion system outer membrane O protein family signature 119 132 1.2E-14 T 11-10-2018 IPR003283 Type III secretion system outer membrane, SpaO GO:0009306 BED32_08265 9bd3cf49e4f5548b9c473aa93b328f3d 335 Gene3D G3DSA:3.40.50.150 60 322 9.0E-78 T 11-10-2018 BED32_08265 9bd3cf49e4f5548b9c473aa93b328f3d 335 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 26 325 53.786 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 BED32_08265 9bd3cf49e4f5548b9c473aa93b328f3d 335 PIRSF PIRSF029038 15 335 6.8E-153 T 11-10-2018 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 BED32_08265 9bd3cf49e4f5548b9c473aa93b328f3d 335 Pfam PF05971 Protein of unknown function (DUF890) 25 322 8.9E-123 T 11-10-2018 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 BED32_08265 9bd3cf49e4f5548b9c473aa93b328f3d 335 SUPERFAMILY SSF53335 63 321 2.07E-30 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 15 32 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 SUPERFAMILY SSF51905 10 323 8.89E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 Gene3D G3DSA:3.50.50.60 11 367 3.3E-79 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 353 363 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 Pfam PF01266 FAD dependent oxidoreductase 11 360 5.6E-56 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 Gene3D G3DSA:3.30.9.10 87 319 3.3E-79 T 11-10-2018 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 11 540 2.7E-268 T 11-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 Gene3D G3DSA:1.10.10.1100 421 493 1.8E-17 T 11-10-2018 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 23 33 7.3E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 348 360 7.3E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 10 22 7.3E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 312 318 7.3E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 39 51 7.3E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_20255 a46081515123fa766e3247f3e8d5ea45 551 Pfam PF04324 BFD-like [2Fe-2S] binding domain 433 484 6.7E-10 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BED32_00095 5249677430cddf0ac5e542fa79fa44b9 103 Pfam PF01527 Transposase 5 77 1.9E-14 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_00095 5249677430cddf0ac5e542fa79fa44b9 103 SUPERFAMILY SSF46689 6 96 3.23E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00095 5249677430cddf0ac5e542fa79fa44b9 103 Gene3D G3DSA:1.10.10.60 10 92 1.7E-7 T 11-10-2018 BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 SMART SM00257 40 84 2.0E-10 T 11-10-2018 IPR018392 LysM domain BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 Gene3D G3DSA:3.10.350.10 33 98 1.5E-13 T 11-10-2018 IPR036779 LysM domain superfamily BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 Gene3D G3DSA:2.70.70.10 101 234 9.4E-37 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 SUPERFAMILY SSF51261 41 233 2.93E-49 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 Pfam PF01476 LysM domain 41 83 5.5E-12 T 11-10-2018 IPR018392 LysM domain BED32_10055 7cd3c204c9eeac7becdd2cbe9ccf12ef 242 Pfam PF01551 Peptidase family M23 136 229 1.7E-30 T 11-10-2018 IPR016047 Peptidase M23 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 Gene3D G3DSA:3.40.50.620 1 313 1.4E-135 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 461 32.74 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 462 1.2E-201 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 SUPERFAMILY SSF48163 299 461 1.11E-43 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 179 189 4.9E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 4.9E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 195 203 4.9E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 4.9E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 4.9E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 305 7.7E-117 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 Gene3D G3DSA:1.10.10.350 367 470 9.7E-23 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 BED32_15300 1a75db46e569c1fc235a3123e8dea0c4 471 SUPERFAMILY SSF52374 3 298 1.21E-113 T 11-10-2018 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 Gene3D G3DSA:1.10.10.60 157 258 1.4E-22 T 11-10-2018 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 223 238 3.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 238 254 3.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 250 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 Gene3D G3DSA:2.60.120.10 8 96 3.7E-9 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_14785 968d41c82916c5232adc3b2e15e49101 261 Pfam PF12833 Helix-turn-helix domain 178 255 3.7E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 SUPERFAMILY SSF51182 14 87 8.4E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_14785 968d41c82916c5232adc3b2e15e49101 261 SUPERFAMILY SSF46689 208 256 1.97E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 SMART SM00342 172 254 6.5E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_14785 968d41c82916c5232adc3b2e15e49101 261 Pfam PF07883 Cupin domain 25 87 7.5E-7 T 11-10-2018 IPR013096 Cupin 2, conserved barrel BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 Pfam PF01546 Peptidase family M20/M25/M40 84 385 8.4E-34 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 8 385 3.7E-151 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 SUPERFAMILY SSF55031 189 304 3.89E-22 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 Gene3D G3DSA:3.30.70.360 189 304 1.5E-79 T 11-10-2018 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 390 65.068 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 118 155 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 Pfam PF07687 Peptidase dimerisation domain 186 296 8.2E-26 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 83 92 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 SUPERFAMILY SSF53187 4 390 7.71E-56 T 11-10-2018 BED32_00610 68f83a560d50f2f938e2bc7a0a3ce6ca 392 Gene3D G3DSA:3.40.630.10 22 372 1.5E-79 T 11-10-2018 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 SUPERFAMILY SSF53659 2 360 1.39E-122 T 11-10-2018 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 5 359 51.365 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 6 355 4.5E-134 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 SMART SM01329 6 355 1.4E-199 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 Gene3D G3DSA:3.40.718.10 1 363 1.5E-155 T 11-10-2018 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 BED32_17965 0f5993e899b9624f8b485a9f4541471e 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 6 354 5.6E-166 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 BED32_17840 6507ea77336204824ed53240368285d0 157 Hamap MF_01332 Secretion monitor [secM]. 1 157 29.71 T 11-10-2018 IPR009502 Secretion monitor GO:0045182 BED32_17840 6507ea77336204824ed53240368285d0 157 ProDom PD089227 MONITOR PERIPLASMIC SECRETION PRECURSOR SIGNAL YACA 1 156 6.0E-67 T 11-10-2018 IPR009502 Secretion monitor GO:0045182 BED32_17840 6507ea77336204824ed53240368285d0 157 Pfam PF06558 Secretion monitor precursor protein (SecM) 4 154 8.8E-59 T 11-10-2018 IPR009502 Secretion monitor GO:0045182 BED32_17840 6507ea77336204824ed53240368285d0 157 PIRSF PIRSF004572 1 157 3.4E-66 T 11-10-2018 IPR009502 Secretion monitor GO:0045182 BED32_13725 1974f18ef7e4b63ccebae1b328da1793 298 Pfam PF01548 Transposase 4 105 2.0E-12 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_13725 1974f18ef7e4b63ccebae1b328da1793 298 Pfam PF02371 Transposase IS116/IS110/IS902 family 170 246 2.6E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_10245 07eadff04f6da33711e639486a5e721f 494 SUPERFAMILY SSF55347 179 491 8.83E-113 T 11-10-2018 BED32_10245 07eadff04f6da33711e639486a5e721f 494 Gene3D G3DSA:3.40.50.720 15 440 6.4E-168 T 11-10-2018 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PIRSF PIRSF000110 1 494 4.3E-183 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 Gene3D G3DSA:3.30.360.10 179 479 6.4E-168 T 11-10-2018 BED32_10245 07eadff04f6da33711e639486a5e721f 494 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 12 492 91.04 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 7.0E-48 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 7.0E-48 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 7.0E-48 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 7.0E-48 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 7.0E-48 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 11-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 491 3.0E-115 T 11-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 SUPERFAMILY SSF51735 7 192 4.07E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_10245 07eadff04f6da33711e639486a5e721f 494 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 12 492 6.3E-200 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_10245 07eadff04f6da33711e639486a5e721f 494 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 16 189 3.4E-59 T 11-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 BED32_19455 79df9fc65296bea032553d906f096637 241 SMART SM00382 11 200 1.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_19455 79df9fc65296bea032553d906f096637 241 Pfam PF00005 ABC transporter 3 151 8.4E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_19455 79df9fc65296bea032553d906f096637 241 Gene3D G3DSA:3.40.50.300 1 241 5.2E-74 T 11-10-2018 BED32_19455 79df9fc65296bea032553d906f096637 241 ProSitePatterns PS00211 ABC transporters family signature. 117 131 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_19455 79df9fc65296bea032553d906f096637 241 SUPERFAMILY SSF52540 2 217 1.24E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15665 0a1a040c03332e31bdf7b6567fe8d5c5 117 SUPERFAMILY SSF52833 3 117 5.66E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_15665 0a1a040c03332e31bdf7b6567fe8d5c5 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 117 7.0E-48 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 BED32_15665 0a1a040c03332e31bdf7b6567fe8d5c5 117 Gene3D G3DSA:3.40.30.10 1 117 1.1E-50 T 11-10-2018 BED32_15665 0a1a040c03332e31bdf7b6567fe8d5c5 117 Pfam PF03960 ArsC family 7 116 4.8E-22 T 11-10-2018 IPR006660 Arsenate reductase-like BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 SMART SM00862 145 220 7.6E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 Gene3D G3DSA:1.10.10.10 123 223 1.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 SMART SM00448 1 112 3.6E-40 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 Gene3D G3DSA:3.40.50.2300 1 120 2.4E-40 T 11-10-2018 BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 SUPERFAMILY SSF52172 1 175 3.42E-39 T 11-10-2018 IPR011006 CheY-like superfamily BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 Pfam PF00072 Response regulator receiver domain 3 113 2.3E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_13010 dbe084c928287e94e66db9a409a4fadc 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.7E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 Pfam PF00117 Glutamine amidotransferase class-I 36 194 4.1E-19 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 PRINTS PR00097 Anthranilate synthase component II signature 72 83 8.9E-5 T 11-10-2018 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 PRINTS PR00097 Anthranilate synthase component II signature 174 187 8.9E-5 T 11-10-2018 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 Gene3D G3DSA:3.40.50.880 1 196 1.2E-68 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 5.2E-5 T 11-10-2018 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 72 83 5.2E-5 T 11-10-2018 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 2 196 33.859 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 PIRSF PIRSF000495 1 196 7.5E-64 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3 196 6.2E-70 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 BED32_08730 10f5777a4b4c7bd7dfe2964e3c05124b 196 SUPERFAMILY SSF52317 3 195 1.68E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 3 1370 19.03 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 SUPERFAMILY SSF64484 9 1357 0.0 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:1.10.1790.20 1128 1307 2.6E-60 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:1.10.40.90 367 409 2.0E-21 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:2.40.50.100 1016 1119 1.6E-28 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF04998 RNA polymerase Rpb1, domain 5 759 1308 1.7E-78 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:1.10.132.30 634 783 4.3E-66 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:2.40.50.100 941 1015 9.1E-26 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:1.10.274.100 483 633 1.1E-37 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 SMART SM00663 228 507 1.1E-184 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF04997 RNA polymerase Rpb1, domain 1 8 335 3.6E-89 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:1.10.150.390 1309 1368 2.7E-28 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 12 1360 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF05000 RNA polymerase Rpb1, domain 4 667 756 1.4E-18 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF04983 RNA polymerase Rpb1, domain 3 482 637 3.9E-27 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Gene3D G3DSA:2.40.50.100 1144 1208 2.6E-60 T 11-10-2018 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 337 386 1.2E-7 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_19830 7032dbd42ccee616c178fe1ee758dbf5 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 385 478 3.8E-27 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 166 190 - T 11-10-2018 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 Pfam PF01218 Coproporphyrinogen III oxidase 9 307 9.1E-131 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 SUPERFAMILY SSF102886 6 307 1.07E-136 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PIRSF PIRSF000166 3 308 1.5E-126 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 Gene3D G3DSA:3.40.1500.10 2 307 1.7E-133 T 11-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 3 282 57.246 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 239 266 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 267 293 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 48 69 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 90 114 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 31 47 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 162 191 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_15465 e348d85a149c3dd9e1770d061277a06d 313 PRINTS PR00073 Coprogen oxidase signature 125 147 7.7E-84 T 11-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 SUPERFAMILY SSF103473 11 460 6.67E-76 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_09300 08aa85c6909df95f82f7204321c09d17 465 Gene3D G3DSA:1.20.1250.20 9 460 2.1E-118 T 11-10-2018 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 6 456 2.6E-100 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 ProSitePatterns PS00216 Sugar transport proteins signature 1. 72 89 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 Pfam PF00083 Sugar (and other) transporter 19 460 7.9E-105 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 PRINTS PR00171 Sugar transporter signature 109 128 4.4E-20 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 PRINTS PR00171 Sugar transporter signature 385 397 4.4E-20 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 PRINTS PR00171 Sugar transporter signature 26 36 4.4E-20 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 PRINTS PR00171 Sugar transporter signature 273 283 4.4E-20 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_09300 08aa85c6909df95f82f7204321c09d17 465 PRINTS PR00171 Sugar transporter signature 362 383 4.4E-20 T 11-10-2018 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-189200 BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 78 1.7E-27 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 Gene3D G3DSA:2.40.50.970 1 79 3.2E-26 T 11-10-2018 IPR037254 HupF/HypC superfamily BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 Pfam PF01455 HupF/HypC family 1 72 2.8E-27 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 63 75 5.3E-23 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 5.3E-23 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 5.3E-23 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 45 61 5.3E-23 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_04040 33c00d0d7b33bcc38016fd7de203dfb3 94 SUPERFAMILY SSF159127 1 83 1.14E-25 T 11-10-2018 IPR037254 HupF/HypC superfamily BED32_15815 12145ea9c2cd108995aadf69a5a0bcaf 121 PIRSF PIRSF011474 2 121 3.1E-37 T 11-10-2018 IPR009693 Glucitol operon activator BED32_15815 12145ea9c2cd108995aadf69a5a0bcaf 121 Pfam PF06923 Glucitol operon activator protein (GutM) 7 113 4.1E-35 T 11-10-2018 IPR009693 Glucitol operon activator BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 SUPERFAMILY SSF53790 2 238 1.83E-70 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 238 5.3E-89 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 Gene3D G3DSA:3.40.1010.10 2 119 1.9E-37 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 84 117 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 Gene3D G3DSA:3.30.950.10 120 253 1.4E-42 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 9 23 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_08835 6610c7f0bb7473bb8df029f290ef4c90 264 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 215 6.7E-40 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_09025 697406f76b75a2c1d074482c0abc603f 271 SMART SM00382 26 212 4.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_09025 697406f76b75a2c1d074482c0abc603f 271 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_09025 697406f76b75a2c1d074482c0abc603f 271 Pfam PF00005 ABC transporter 17 165 1.0E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_09025 697406f76b75a2c1d074482c0abc603f 271 Gene3D G3DSA:3.40.50.300 2 270 6.4E-66 T 11-10-2018 BED32_09025 697406f76b75a2c1d074482c0abc603f 271 SUPERFAMILY SSF52540 2 231 4.13E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09025 697406f76b75a2c1d074482c0abc603f 271 TIGRFAM TIGR01166 cbiO: cobalt ABC transporter, ATP-binding protein 11 199 7.3E-81 T 11-10-2018 IPR005876 Cobalt transport protein ATP-binding subunit GO:0006824 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 17 41 0.002 T 11-10-2018 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 17.15 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 SUPERFAMILY SSF57840 8 41 7.59E-14 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 9 41 1.5E-9 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_06210 0ae7c15400a099c15f6340fee359fa55 47 Pfam PF00444 Ribosomal protein L36 1 41 2.6E-17 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04685 9de865a759f6c1b97e59abf2e450f143 171 SUPERFAMILY SSF49401 47 171 4.62E-24 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_04685 9de865a759f6c1b97e59abf2e450f143 171 Gene3D G3DSA:2.60.40.1090 49 171 2.6E-35 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_04685 9de865a759f6c1b97e59abf2e450f143 171 Pfam PF00419 Fimbrial protein 38 171 4.1E-13 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 Pfam PF03477 ATP cone domain 6 92 1.1E-15 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 4.9E-38 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 SUPERFAMILY SSF51998 222 741 6.1E-168 T 11-10-2018 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 SUPERFAMILY SSF48168 10 221 2.49E-73 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 141 219 6.2E-13 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 4.9E-117 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 9.1E-180 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 Gene3D G3DSA:1.10.1650.20 341 394 1.8E-156 T 11-10-2018 BED32_14415 2c0db28708b9f04f0110040fbd9bf2bb 761 Gene3D G3DSA:3.20.70.20 209 732 1.8E-156 T 11-10-2018 BED32_14770 066309da091eb586589acd5c97170902 280 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 19 261 35.241 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 SUPERFAMILY SSF55120 20 275 1.37E-92 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 Gene3D G3DSA:3.30.70.660 123 260 1.5E-51 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 PIRSF PIRSF001430 19 272 3.7E-79 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 Pfam PF01416 tRNA pseudouridine synthase 26 120 6.9E-10 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 Pfam PF01416 tRNA pseudouridine synthase 160 262 9.1E-30 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 20 256 7.3E-78 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14770 066309da091eb586589acd5c97170902 280 Gene3D G3DSA:3.30.70.580 17 122 1.8E-39 T 11-10-2018 BED32_10460 38b099b37981a42e6a83e1e339d63d4c 388 Gene3D G3DSA:2.130.10.10 1 388 1.7E-171 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BED32_10460 38b099b37981a42e6a83e1e339d63d4c 388 SUPERFAMILY SSF82171 15 381 2.62E-31 T 11-10-2018 BED32_10460 38b099b37981a42e6a83e1e339d63d4c 388 Pfam PF14583 Oligogalacturonate lyase 1 386 1.7E-257 T 11-10-2018 IPR027946 Oligogalacturonate lyase domain GO:0045490|GO:0047487 KEGG: 00040+4.2.2.6 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 SUPERFAMILY SSF100879 241 349 7.65E-27 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Gene3D G3DSA:3.30.70.270 4 164 3.1E-65 T 11-10-2018 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Gene3D G3DSA:2.30.40.20 21 73 3.1E-65 T 11-10-2018 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Gene3D G3DSA:3.30.1490.100 237 351 4.3E-30 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Pfam PF11799 impB/mucB/samB family C-terminal domain 234 341 2.5E-9 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 SUPERFAMILY SSF56672 1 234 1.6E-93 T 11-10-2018 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Gene3D G3DSA:1.10.150.20 166 227 2.3E-19 T 11-10-2018 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Hamap MF_01113 DNA polymerase IV [dinB]. 1 349 37.341 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Pfam PF11798 IMS family HHH motif 167 197 1.5E-8 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BED32_05725 95d095d8b9df5a139f6bdf0f7e152b8e 352 Pfam PF00817 impB/mucB/samB family 7 154 1.2E-49 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_02055 8892de9e6762dffbe9bae3eae428252b 373 SUPERFAMILY SSF102405 77 282 9.62E-41 T 11-10-2018 BED32_02055 8892de9e6762dffbe9bae3eae428252b 373 Gene3D G3DSA:3.40.50.450 2 285 3.8E-86 T 11-10-2018 BED32_02055 8892de9e6762dffbe9bae3eae428252b 373 Pfam PF02481 DNA recombination-mediator protein A 69 273 2.0E-74 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BED32_02055 8892de9e6762dffbe9bae3eae428252b 373 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 66 282 1.6E-80 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 638 1080 1.3E-99 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 Gene3D G3DSA:2.40.128.130 770 1080 4.2E-67 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 SUPERFAMILY SSF51126 162 741 5.65E-35 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 SMART SM00869 811 1068 1.3E-32 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 Pfam PF03797 Autotransporter beta-domain 815 1057 3.6E-41 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 Pfam PF03212 Pertactin 638 740 9.1E-14 T 11-10-2018 IPR004899 Pertactin, central region BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 SUPERFAMILY SSF103515 778 1080 3.27E-42 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_01115 c3bec5b5e7063c0d9852594d9c4e5b9b 1080 Gene3D G3DSA:2.160.20.20 288 744 5.0E-65 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 SUPERFAMILY SSF52317 3 195 1.04E-32 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 SMART SM00342 230 306 1.9E-6 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 Pfam PF01965 DJ-1/PfpI family 4 173 4.3E-12 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 Pfam PF12833 Helix-turn-helix domain 237 301 3.3E-11 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 Gene3D G3DSA:3.40.50.880 1 213 9.8E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 Gene3D G3DSA:1.10.10.60 214 307 7.6E-15 T 11-10-2018 BED32_20630 394c82dd66ad6c2c58f609094b197dbb 308 SUPERFAMILY SSF46689 213 263 3.63E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20000 08b648610713a9de119d245e8a25297a 260 Gene3D G3DSA:3.20.20.140 1 260 7.9E-95 T 11-10-2018 BED32_20000 08b648610713a9de119d245e8a25297a 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_20000 08b648610713a9de119d245e8a25297a 260 SUPERFAMILY SSF51556 1 259 1.29E-79 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_20000 08b648610713a9de119d245e8a25297a 260 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 124 134 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 BED32_20000 08b648610713a9de119d245e8a25297a 260 Hamap MF_00901 3'-5' ssDNA/RNA exonuclease TatD [tatD]. 1 260 64.171 T 11-10-2018 IPR024918 3'-5' ssDNA/RNA exonuclease TatD GO:0008408 BED32_20000 08b648610713a9de119d245e8a25297a 260 Pfam PF01026 TatD related DNase 2 257 1.0E-65 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_20000 08b648610713a9de119d245e8a25297a 260 PIRSF PIRSF005902 1 260 2.3E-71 T 11-10-2018 IPR001130 TatD family GO:0016788 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 41.895 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 SUPERFAMILY SSF56770 43 190 5.1E-64 T 11-10-2018 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 Gene3D G3DSA:3.40.50.12280 26 193 6.5E-70 T 11-10-2018 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 69 175 5.2E-22 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14605 2df207d132bf2e6dc2b11adf3f1bac31 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 46 183 9.4E-69 T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_13080 806def96a657e3101b53116bf86aeb8d 306 SUPERFAMILY SSF56112 36 303 8.05E-40 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_13080 806def96a657e3101b53116bf86aeb8d 306 Hamap MF_01604 Thiamine kinase [thiK]. 9 302 42.088 T 11-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 BED32_13080 806def96a657e3101b53116bf86aeb8d 306 TIGRFAM TIGR02721 ycfN_thiK: thiamine kinase 40 302 2.0E-98 T 11-10-2018 IPR014093 Thiamine kinase GO:0006772|GO:0016310|GO:0019165 KEGG: 00730+2.7.1.89|MetaCyc: PWY-6896 BED32_13080 806def96a657e3101b53116bf86aeb8d 306 Pfam PF01636 Phosphotransferase enzyme family 81 255 3.4E-12 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase BED32_13080 806def96a657e3101b53116bf86aeb8d 306 Gene3D G3DSA:3.90.1200.10 123 305 4.0E-21 T 11-10-2018 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 7.9E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 7.9E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 7.9E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 7.9E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 PIRSF PIRSF001365 1 293 1.7E-93 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 289 6.1E-120 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 289 64.828 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 Pfam PF00701 Dihydrodipicolinate synthetase family 2 289 4.3E-114 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 SUPERFAMILY SSF51569 2 291 9.0E-98 T 11-10-2018 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 SMART SM01130 1 291 1.9E-143 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15640 dce93ef3791bea5874bab75a9662da44 293 Gene3D G3DSA:3.20.20.70 1 293 2.1E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 79 246 7.0E-37 T 11-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 Pfam PF02195 ParB-like nuclease domain 83 157 9.7E-12 T 11-10-2018 IPR003115 ParB/Sulfiredoxin BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 SMART SM00470 71 158 4.3E-10 T 11-10-2018 IPR003115 ParB/Sulfiredoxin BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 SUPERFAMILY SSF109709 153 256 9.68E-5 T 11-10-2018 BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 SUPERFAMILY SSF110849 85 160 8.63E-13 T 11-10-2018 IPR036086 ParB/Sulfiredoxin superfamily BED32_00255 3e5216a88f3fc42a5992865c7ba5ad02 321 Gene3D G3DSA:1.10.10.2830 161 271 2.8E-31 T 11-10-2018 BED32_14155 a6396064ad647b726065fc069205a03e 327 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 171 3.1E-39 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BED32_14155 a6396064ad647b726065fc069205a03e 327 SUPERFAMILY SSF52540 6 186 7.48E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14155 a6396064ad647b726065fc069205a03e 327 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 240 320 5.2E-7 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BED32_14155 a6396064ad647b726065fc069205a03e 327 Gene3D G3DSA:3.40.50.300 2 196 5.1E-44 T 11-10-2018 BED32_14155 a6396064ad647b726065fc069205a03e 327 SMART SM00833 239 322 9.9E-5 T 11-10-2018 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 10 433 29.984 T 11-10-2018 IPR026593 Protein translocase subunit SecY BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 ProSitePatterns PS00756 Protein secY signature 2. 173 190 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Pfam PF00344 SecY translocase 76 417 1.3E-119 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 180 203 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 370 388 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 315 337 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 402 420 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 154 179 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 272 291 1.3E-98 T 11-10-2018 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 PIRSF PIRSF004557 11 441 1.6E-123 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 Gene3D G3DSA:1.10.3370.10 13 429 1.9E-164 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 429 2.9E-141 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_01975 c9ddd3ae7a6ecd2a11613e657fea94a3 443 SUPERFAMILY SSF103491 16 424 6.28E-134 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 221 239 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 197 212 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 249 266 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 286 299 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 98 113 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 67 85 1.3E-44 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 Pfam PF01497 Periplasmic binding protein 50 283 1.6E-39 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_17610 cc5eaef19d19af5c310f957c92522267 309 Gene3D G3DSA:3.40.50.1980 136 307 2.1E-53 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 Gene3D G3DSA:3.40.50.1980 45 134 2.5E-22 T 11-10-2018 BED32_17610 cc5eaef19d19af5c310f957c92522267 309 SUPERFAMILY SSF53807 47 302 2.71E-53 T 11-10-2018 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 Pfam PF00545 ribonuclease 67 154 3.2E-25 T 11-10-2018 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PRINTS PR00117 Barnase signature 115 134 1.4E-29 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PRINTS PR00117 Barnase signature 74 91 1.4E-29 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PRINTS PR00117 Barnase signature 137 155 1.4E-29 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PRINTS PR00117 Barnase signature 94 112 1.4E-29 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PRINTS PR00117 Barnase signature 54 71 1.4E-29 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 SUPERFAMILY SSF53933 51 156 7.94E-39 T 11-10-2018 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 Gene3D G3DSA:3.10.450.30 44 157 1.4E-45 T 11-10-2018 BED32_02580 0e77f09b5f1ff35270ca5222bbab24ba 157 PIRSF PIRSF001013 1 157 1.3E-67 T 11-10-2018 IPR001887 Barnase GO:0003723|GO:0004521 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 ProSitePatterns PS01334 Pyrrolidone-carboxylate peptidase cysteine active site. 130 144 - T 11-10-2018 IPR033694 Pyroglutamyl peptidase I, Cys active site MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 TIGRFAM TIGR00504 pyro_pdase: pyroglutamyl-peptidase I 4 214 1.7E-91 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 SUPERFAMILY SSF53182 1 215 4.45E-76 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PIRSF PIRSF015592 1 213 1.1E-89 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 Gene3D G3DSA:3.40.630.20 1 215 1.6E-83 T 11-10-2018 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 Hamap MF_00417 Pyrrolidone-carboxylate peptidase [pcp]. 2 201 42.056 T 11-10-2018 IPR029762 Pyroglutamyl peptidase I, bacterial-type GO:0005829|GO:0006508|GO:0008234|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 132 148 2.0E-47 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 62 74 2.0E-47 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 4 27 2.0E-47 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 80 100 2.0E-47 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 PRINTS PR00706 Pyroglutamyl peptidase I (C15) family signature 162 174 2.0E-47 T 11-10-2018 IPR000816 Peptidase C15, pyroglutamyl peptidase I GO:0005829|GO:0006508|GO:0016920 MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 ProSitePatterns PS01333 Pyrrolidone-carboxylate peptidase glutamic acid active site. 69 85 - T 11-10-2018 IPR033693 Pyroglutamyl peptidase I, Glu active site MetaCyc: PWY-7942 BED32_07730 0cd63aac3ffc39aa276c90e538b14dea 215 Pfam PF01470 Pyroglutamyl peptidase 3 202 2.8E-83 T 11-10-2018 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like MetaCyc: PWY-7942 BED32_21200 902688932682060bf37feb945d917e15 461 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 28 456 2.0E-140 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BED32_21200 902688932682060bf37feb945d917e15 461 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 374 394 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BED32_21200 902688932682060bf37feb945d917e15 461 Pfam PF00860 Permease family 33 425 2.2E-108 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BED32_21200 902688932682060bf37feb945d917e15 461 TIGRFAM TIGR03173 pbuX: xanthine permease 38 458 8.2E-128 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 14 145 3.2E-35 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 Gene3D G3DSA:1.25.40.10 6 150 1.9E-38 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 65 87 9.8E-9 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 97 119 9.8E-9 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 16 39 9.8E-9 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 PRINTS PR01595 Gram-negative bacterial type III secretion SycD chaperone signature 41 60 9.8E-9 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 SUPERFAMILY SSF48452 19 125 8.28E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_19645 f1803c3af926bb6fbef7381f39854a0e 152 PIRSF PIRSF003165 2 151 2.5E-45 T 11-10-2018 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup BED32_03500 d59ffb2241f4762dc53cde1bf7d5dde6 210 Gene3D G3DSA:3.90.79.10 3 209 7.6E-66 T 11-10-2018 BED32_03500 d59ffb2241f4762dc53cde1bf7d5dde6 210 SUPERFAMILY SSF55811 10 205 2.3E-50 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_03500 d59ffb2241f4762dc53cde1bf7d5dde6 210 ProSitePatterns PS00893 Nudix box signature. 97 118 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_03500 d59ffb2241f4762dc53cde1bf7d5dde6 210 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 199 2.3E-75 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 BED32_03500 d59ffb2241f4762dc53cde1bf7d5dde6 210 Pfam PF00293 NUDIX domain 59 180 5.9E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_15270 60f36238cd1eb2370befa43cb4c1ec65 393 Pfam PF07670 Nucleoside recognition 91 189 2.4E-6 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BED32_15270 60f36238cd1eb2370befa43cb4c1ec65 393 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 1.4E-16 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BED32_15270 60f36238cd1eb2370befa43cb4c1ec65 393 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 192 391 1.8E-59 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BED32_16445 86193d04af947253ff1eb024543a2106 110 Hamap MF_00947 Acid stress chaperone HdeB [hdeB]. 1 103 28.574 T 11-10-2018 IPR028623 HNS-dependent expression B GO:0009268|GO:0051082 BED32_16445 86193d04af947253ff1eb024543a2106 110 Gene3D G3DSA:1.10.890.10 30 104 4.0E-35 T 11-10-2018 IPR038303 HNS-dependent expression A/B superfamily BED32_16445 86193d04af947253ff1eb024543a2106 110 Pfam PF06411 HdeA/HdeB family 9 96 2.0E-24 T 11-10-2018 IPR010486 HNS-dependent expression A/B BED32_16445 86193d04af947253ff1eb024543a2106 110 SUPERFAMILY SSF47752 35 95 2.75E-5 T 11-10-2018 IPR036831 HNS-dependent expression A superfamily GO:0030288|GO:0071468 BED32_16445 86193d04af947253ff1eb024543a2106 110 ProDom PD070929 HDEB PRECURSOR SIGNAL EXPORTED PERIPLASMIC SECRETED ECS4389 10K-L SEQUENCING DIRECT 36 104 2.0E-33 T 11-10-2018 BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 Gene3D G3DSA:3.20.20.150 1 391 5.4E-146 T 11-10-2018 BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 PIRSF PIRSF016049 1 392 5.4E-180 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 TIGRFAM TIGR00695 uxuA: mannonate dehydratase 1 392 1.0E-213 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 Hamap MF_00106 Mannonate dehydratase [uxuA]. 1 396 226.069 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 SUPERFAMILY SSF51658 1 383 2.33E-79 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily BED32_14130 e2e32aceb0e4b382e8e1f93f330492f2 396 Pfam PF03786 D-mannonate dehydratase (UxuA) 1 388 7.1E-157 T 11-10-2018 IPR004628 Mannonate dehydratase GO:0006064|GO:0008927 KEGG: 00040+4.2.1.8|MetaCyc: PWY-7242 BED32_01835 c3f3bcebb5a0f93aa26d8d29bf8c63d3 95 Hamap MF_01564 Protein TusB [tusB]. 1 95 28.081 T 11-10-2018 IPR023526 Sulphur relay, TusB GO:0002143|GO:0005737 BED32_01835 c3f3bcebb5a0f93aa26d8d29bf8c63d3 95 Pfam PF04077 DsrH like protein 7 92 3.0E-27 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 BED32_01835 c3f3bcebb5a0f93aa26d8d29bf8c63d3 95 Gene3D G3DSA:3.40.1260.10 1 95 2.0E-28 T 11-10-2018 IPR027396 DsrEFH-like BED32_01835 c3f3bcebb5a0f93aa26d8d29bf8c63d3 95 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 95 4.3E-29 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 BED32_01835 c3f3bcebb5a0f93aa26d8d29bf8c63d3 95 SUPERFAMILY SSF75169 1 95 5.0E-29 T 11-10-2018 IPR027396 DsrEFH-like BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 SUPERFAMILY SSF49354 21 147 9.68E-43 T 11-10-2018 IPR008962 PapD-like superfamily BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 147 3.2E-42 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 PRINTS PR00969 Pili chaperone signature 27 36 1.0E-26 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 PRINTS PR00969 Pili chaperone signature 168 183 1.0E-26 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 PRINTS PR00969 Pili chaperone signature 104 121 1.0E-26 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 PRINTS PR00969 Pili chaperone signature 76 97 1.0E-26 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 PRINTS PR00969 Pili chaperone signature 129 144 1.0E-26 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 235 1.1E-13 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 Gene3D G3DSA:2.60.40.10 150 242 1.5E-17 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 Gene3D G3DSA:2.60.40.10 28 147 4.3E-41 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_00875 f1c54b25a52056346e99cb46f84a9074 242 SUPERFAMILY SSF49584 141 237 1.3E-13 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_18100 b69a0dcc241395a11c36636616d75605 154 Hamap MF_01191 UPF0442 protein YjjB [yjjB]. 1 154 35.072 T 11-10-2018 IPR020914 Uncharacterised protein family UPF0442 BED32_18100 b69a0dcc241395a11c36636616d75605 154 Pfam PF12821 Threonine/Serine exporter, ThrE 10 144 2.5E-35 T 11-10-2018 IPR024528 Threonine/Serine exporter, ThrE BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 ProSitePatterns PS00543 HlyD family secretion proteins signature. 428 450 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Gene3D G3DSA:1.10.287.470 255 315 6.0E-14 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 328 349 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 361 385 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 385 408 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 443 463 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 59 82 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 101 121 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 428 443 6.4E-57 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Gene3D G3DSA:2.40.50.100 89 210 7.6E-9 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Pfam PF13437 HlyD family secretion protein 316 423 2.1E-17 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Pfam PF13533 Biotin-lipoyl like 93 137 4.4E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Gene3D G3DSA:2.40.30.170 353 441 6.0E-14 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Gene3D G3DSA:1.10.287.470 123 208 7.6E-9 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 Gene3D G3DSA:2.40.50.100 316 352 6.0E-14 T 11-10-2018 BED32_11515 bca94dbca6bf7542c6281d5d59003426 464 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 50 464 9.4E-119 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 SUPERFAMILY SSF54534 173 277 4.45E-28 T 11-10-2018 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Hamap MF_01183 Chaperone SurA [surA]. 9 428 34.265 T 11-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Gene3D G3DSA:3.10.50.40 283 385 3.9E-86 T 11-10-2018 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Gene3D G3DSA:1.10.4030.10 21 148 1.5E-44 T 11-10-2018 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Gene3D G3DSA:3.10.50.40 175 386 3.9E-86 T 11-10-2018 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Pfam PF00639 PPIC-type PPIASE domain 178 272 6.3E-20 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Pfam PF00639 PPIC-type PPIASE domain 289 381 1.6E-25 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 Pfam PF09312 SurA N-terminal domain 25 142 9.5E-46 T 11-10-2018 IPR015391 SurA N-terminal BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 SUPERFAMILY SSF109998 25 201 8.63E-45 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily BED32_18070 e6a6e9fb83e792f40beb844fe7e9c521 434 SUPERFAMILY SSF54534 283 385 3.21E-33 T 11-10-2018 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 SUPERFAMILY SSF52172 2 173 6.34E-36 T 11-10-2018 IPR011006 CheY-like superfamily BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 Gene3D G3DSA:1.10.10.10 122 223 1.1E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 1 219 2.3E-89 T 11-10-2018 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 SMART SM00862 144 219 3.9E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 Pfam PF00072 Response regulator receiver domain 2 110 1.6E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 SMART SM00448 1 109 6.1E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 1.5E-24 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_07295 b6e666e91dcc1eb57fea043670a8a034 227 Gene3D G3DSA:3.40.50.2300 1 119 2.8E-33 T 11-10-2018 BED32_05665 4800e646829df5f009a3892fe18e3767 413 Pfam PF03116 NQR2, RnfD, RnfE family 43 405 2.3E-107 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 BED32_05665 4800e646829df5f009a3892fe18e3767 413 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 1.4E-193 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 BED32_05665 4800e646829df5f009a3892fe18e3767 413 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.643 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 BED32_05665 4800e646829df5f009a3892fe18e3767 413 PIRSF PIRSF016055 1 413 6.9E-198 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:2.40.30.170 58 70 1.2E-5 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:1.10.287.470 105 145 1.2E-5 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:2.40.50.100 266 301 4.5E-10 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Pfam PF13437 HlyD family secretion protein 266 390 3.6E-12 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 82 102 4.9E-13 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 310 334 4.9E-13 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 402 422 4.9E-13 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 387 402 4.9E-13 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 277 298 4.9E-13 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:2.40.30.170 302 396 4.5E-10 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:1.10.287.470 200 265 4.5E-10 T 11-10-2018 BED32_13115 fd5aa0a653734ef4a45c19189d358577 427 Gene3D G3DSA:2.40.50.100 71 104 1.2E-5 T 11-10-2018 BED32_11115 fff13788897dc6b6d2e1b4ae2200b9c2 148 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 15 148 4.1E-56 T 11-10-2018 IPR011979 Conserved hypothetical protein CHP02293 BED32_11115 fff13788897dc6b6d2e1b4ae2200b9c2 148 Pfam PF09722 Protein of unknown function (DUF2384) 94 145 3.1E-14 T 11-10-2018 IPR024467 Domain of unknown function DUF2384 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 SUPERFAMILY SSF52540 1 347 5.84E-126 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 SUPERFAMILY SSF52980 819 1121 3.43E-97 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Gene3D G3DSA:1.10.486.10 456 664 2.9E-201 T 11-10-2018 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Gene3D G3DSA:1.10.10.990 865 936 1.3E-27 T 11-10-2018 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 807 2.4E-299 T 11-10-2018 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Gene3D G3DSA:3.40.50.10930 4 315 2.8E-129 T 11-10-2018 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1123 21.065 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 SUPERFAMILY SSF52540 370 811 1.7E-105 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 PIRSF PIRSF000980 1 1123 0.0 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Gene3D G3DSA:1.10.10.160 79 187 2.8E-129 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1088 0.0 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 BED32_17035 bd1bf893f677a6274bb5b230d4afdb7d 1123 Gene3D G3DSA:3.40.50.300 334 809 2.9E-201 T 11-10-2018 BED32_16510 df15c5b496ffef993b896ad1bc10b339 327 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 322 8.2E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_16510 df15c5b496ffef993b896ad1bc10b339 327 Gene3D G3DSA:1.10.3720.10 92 321 2.1E-16 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16510 df15c5b496ffef993b896ad1bc10b339 327 SUPERFAMILY SSF161098 97 307 1.13E-16 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 SUPERFAMILY SSF53335 17 265 3.16E-77 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 SMART SM00650 25 198 1.1E-81 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 11 264 4.3E-77 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 Gene3D G3DSA:1.10.8.100 201 268 1.3E-27 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 Gene3D G3DSA:3.40.50.150 1 199 4.7E-67 T 11-10-2018 BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 11 264 3.5E-87 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BED32_18080 49e621a9f4a2f10d2eb7a41850240cb5 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 265 55.739 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 BED32_02965 1f9d47047a22d18dd47f501a2c673f5d 260 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 258 4.9E-102 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria BED32_02965 1f9d47047a22d18dd47f501a2c673f5d 260 Pfam PF02405 Permease MlaE 45 256 3.3E-75 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 BED32_06020 60936067a8a05446ba9ce677fee02a92 454 Gene3D G3DSA:1.20.1250.20 3 389 1.5E-99 T 11-10-2018 BED32_06020 60936067a8a05446ba9ce677fee02a92 454 SUPERFAMILY SSF103473 1 390 6.54E-61 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_06020 60936067a8a05446ba9ce677fee02a92 454 Pfam PF07690 Major Facilitator Superfamily 20 346 4.5E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_06020 60936067a8a05446ba9ce677fee02a92 454 Gene3D G3DSA:3.30.70.100 390 454 8.5E-27 T 11-10-2018 BED32_03930 ef2969f0032c7241f14b703e9e0a66f5 293 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 129 3.5E-9 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BED32_03930 ef2969f0032c7241f14b703e9e0a66f5 293 SUPERFAMILY SSF64518 4 293 1.29E-37 T 11-10-2018 BED32_03930 ef2969f0032c7241f14b703e9e0a66f5 293 Pfam PF00700 Bacterial flagellin C-terminal helical region 213 293 1.3E-5 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 8 332 4.7E-125 T 11-10-2018 IPR030830 5-Dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 276 289 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 Pfam PF09863 Uncharacterized protein conserved in bacteria (DUF2090) 327 635 4.6E-142 T 11-10-2018 IPR018659 Protein of unknown function DUF2090 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 Gene3D G3DSA:3.40.1190.20 11 314 1.2E-90 T 11-10-2018 IPR029056 Ribokinase-like BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 Pfam PF00294 pfkB family carbohydrate kinase 9 324 1.2E-46 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 Gene3D G3DSA:3.20.20.70 343 635 1.1E-53 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 Gene3D G3DSA:2.20.150.10 16 111 1.2E-90 T 11-10-2018 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily KEGG: 00562+2.7.1.92 BED32_01330 951bf5605e0f7efa63a31e21e884156e 639 SUPERFAMILY SSF53613 8 331 2.34E-70 T 11-10-2018 IPR029056 Ribokinase-like BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 Pfam PF08497 Radical SAM N-terminal 28 375 4.7E-146 T 11-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 28 640 2.9E-266 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 SMART SM00729 372 622 1.7E-6 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 Gene3D G3DSA:3.80.30.20 371 624 1.5E-13 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 SUPERFAMILY SSF102114 361 652 7.72E-11 T 11-10-2018 BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 Pfam PF11842 Domain of unknown function (DUF3362) 590 735 4.4E-44 T 11-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 Pfam PF04055 Radical SAM superfamily 376 581 3.1E-19 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 28 642 50.645 T 11-10-2018 IPR022946 Uncharacterised protein family UPF0313 BED32_03555 70fa834a8665f7726856ca78189d5bbc 767 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 376 396 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 1.6E-32 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 1.9E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.9E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 1.9E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 SUPERFAMILY SSF143800 1 67 1.73E-26 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 Gene3D G3DSA:2.30.170.50 1 70 2.8E-32 T 11-10-2018 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 30.056 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_00580 f37f70d74aaa08bb09b279445e24d283 71 Pfam PF01197 Ribosomal protein L31 1 64 1.3E-28 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_08970 1f290e99f8726b9fe05b4d5e56a7e3c1 200 SUPERFAMILY SSF53790 1 198 1.05E-41 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_08970 1f290e99f8726b9fe05b4d5e56a7e3c1 200 Gene3D G3DSA:3.40.1010.10 1 101 6.0E-24 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_08970 1f290e99f8726b9fe05b4d5e56a7e3c1 200 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 185 3.4E-29 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_08970 1f290e99f8726b9fe05b4d5e56a7e3c1 200 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 4 195 2.8E-58 T 11-10-2018 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 BED32_01200 3b5df8ee2ac5ede04e24c513739dd336 181 Pfam PF16473 3' exoribonuclease, RNase T-like 21 167 1.0E-7 T 11-10-2018 IPR033390 3'-5' exoribonuclease Rv2179c-like domain BED32_01200 3b5df8ee2ac5ede04e24c513739dd336 181 SUPERFAMILY SSF53098 19 173 2.93E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_01200 3b5df8ee2ac5ede04e24c513739dd336 181 Gene3D G3DSA:3.30.420.10 19 179 2.0E-20 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 1 103 3.9E-38 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 11-10-2018 IPR027486 Ribosomal protein S10 domain BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01870 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 11-10-2018 IPR027486 Ribosomal protein S10 domain BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 259 4.6E-57 T 11-10-2018 BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 259 3.3E-56 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 232 2.6E-18 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 SUPERFAMILY SSF56784 1 264 6.81E-66 T 11-10-2018 IPR036412 HAD-like superfamily BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 Gene3D G3DSA:3.40.50.1000 4 255 8.7E-79 T 11-10-2018 IPR023214 HAD superfamily BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 213 235 - T 11-10-2018 BED32_12535 8e3e3ad5e69d2a3543efa8782bb654f1 272 Gene3D G3DSA:3.30.1240.10 83 189 8.7E-79 T 11-10-2018 BED32_06130 0238daa5d87fbef1849c64545e2f6ba0 346 Gene3D G3DSA:3.40.50.1100 49 155 8.9E-68 T 11-10-2018 BED32_06130 0238daa5d87fbef1849c64545e2f6ba0 346 Gene3D G3DSA:3.40.50.1100 22 322 8.9E-68 T 11-10-2018 BED32_06130 0238daa5d87fbef1849c64545e2f6ba0 346 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 312 3.1E-44 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_06130 0238daa5d87fbef1849c64545e2f6ba0 346 SUPERFAMILY SSF53686 21 332 1.14E-69 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_20710 932c5acb674fc88481830e97d104db34 118 Gene3D G3DSA:4.10.860.10 1 58 5.4E-14 T 11-10-2018 BED32_20710 932c5acb674fc88481830e97d104db34 118 Pfam PF10928 Protein of unknown function (DUF2810) 64 116 8.8E-33 T 11-10-2018 IPR021230 Protein of unknown function DUF2810 BED32_20710 932c5acb674fc88481830e97d104db34 118 Gene3D G3DSA:3.30.1370.150 59 118 8.1E-35 T 11-10-2018 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 SUPERFAMILY SSF50249 3 68 2.06E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_12755 2455053a6906736a69ca40bce64bc56b 69 Gene3D G3DSA:2.40.50.140 1 69 1.8E-32 T 11-10-2018 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.8E-33 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 PIRSF PIRSF002599 1 69 6.4E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_12755 2455053a6906736a69ca40bce64bc56b 69 SMART SM00357 5 69 8.3E-32 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_12755 2455053a6906736a69ca40bce64bc56b 69 PRINTS PR00050 Cold shock protein signature 6 21 1.1E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_01270 f41fd39e3ea43ed767ced5caca373470 286 SUPERFAMILY SSF54211 3 150 1.97E-21 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_01270 f41fd39e3ea43ed767ced5caca373470 286 Gene3D G3DSA:3.30.230.10 19 132 3.1E-13 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_01270 f41fd39e3ea43ed767ced5caca373470 286 Pfam PF00288 GHMP kinases N terminal domain 73 120 1.3E-8 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BED32_01270 f41fd39e3ea43ed767ced5caca373470 286 PIRSF PIRSF033887 1 280 2.7E-62 T 11-10-2018 IPR012363 Propanediol utilisation/coumermycin biosynthesis, PduX-related KEGG: 00860+2.7.1.177|MetaCyc: PWY-5443 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 Pfam PF01263 Aldose 1-epimerase 25 350 1.4E-84 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 PIRSF PIRSF005096 6 354 8.8E-121 T 11-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 SUPERFAMILY SSF74650 15 351 6.28E-107 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 19 351 3.4E-140 T 11-10-2018 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 178 187 - T 11-10-2018 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 BED32_07905 777ca85adb8f5f3b6e11c7d3a99c6573 354 Gene3D G3DSA:2.70.98.10 15 352 4.2E-115 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BED32_05200 cd65202233f4f17fc2a598b7067af349 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 106 4.2E-29 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_05200 cd65202233f4f17fc2a598b7067af349 217 SUPERFAMILY SSF161098 12 203 7.06E-39 T 11-10-2018 IPR035906 MetI-like superfamily BED32_05200 cd65202233f4f17fc2a598b7067af349 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 210 1.7E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_05200 cd65202233f4f17fc2a598b7067af349 217 Gene3D G3DSA:1.10.3720.10 5 215 1.2E-46 T 11-10-2018 IPR035906 MetI-like superfamily BED32_06240 16730b0b09dadec1e1e91279e236934c 120 Pfam PF00874 PRD domain 25 106 1.3E-8 T 11-10-2018 IPR011608 PRD domain GO:0006355 BED32_06240 16730b0b09dadec1e1e91279e236934c 120 SUPERFAMILY SSF63520 24 110 2.35E-9 T 11-10-2018 IPR036634 PRD domain superfamily GO:0006355 BED32_06240 16730b0b09dadec1e1e91279e236934c 120 Gene3D G3DSA:1.10.1790.10 19 114 4.3E-6 T 11-10-2018 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 4.1E-231 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 SMART SM00382 49 332 9.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00555 69f89054da9030d9d07c689504e9dca4 443 SMART SM01086 335 434 6.4E-24 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_00555 69f89054da9030d9d07c689504e9dca4 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 187 329 1.9E-41 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 102 9.2E-7 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 Gene3D G3DSA:1.10.8.60 335 440 8.4E-42 T 11-10-2018 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 SUPERFAMILY SSF52540 3 441 8.82E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00555 69f89054da9030d9d07c689504e9dca4 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.605 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 BED32_00555 69f89054da9030d9d07c689504e9dca4 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 405 1.5E-6 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_09150 0a6fd50e1c22276313ed38e5dc06428a 390 SUPERFAMILY SSF56601 17 387 9.32E-89 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_09150 0a6fd50e1c22276313ed38e5dc06428a 390 Pfam PF00144 Beta-lactamase 19 380 9.9E-65 T 11-10-2018 IPR001466 Beta-lactamase-related BED32_09150 0a6fd50e1c22276313ed38e5dc06428a 390 Gene3D G3DSA:3.40.710.10 3 389 2.6E-106 T 11-10-2018 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 SUPERFAMILY SSF141734 1 104 1.02E-42 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 SUPERFAMILY SSF101386 96 185 1.44E-23 T 11-10-2018 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 15 87 1.4E-30 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 98 183 1.7E-16 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 1 185 33.661 T 11-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 38 87 2.0E-24 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 94 180 18.54 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 97 179 3.8E-30 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Gene3D G3DSA:3.10.20.400 1 79 3.2E-32 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 BED32_08715 edc0fae722659be1b05dd970c16e798c 186 Gene3D G3DSA:1.10.287.1080 94 186 3.8E-28 T 11-10-2018 BED32_00485 da97831076e1f23862c2a11116ab2c48 312 Gene3D G3DSA:3.40.50.720 125 297 2.5E-74 T 11-10-2018 BED32_00485 da97831076e1f23862c2a11116ab2c48 312 SUPERFAMILY SSF51735 1 310 7.01E-70 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_00485 da97831076e1f23862c2a11116ab2c48 312 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 12 308 2.2E-59 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 BED32_00485 da97831076e1f23862c2a11116ab2c48 312 Gene3D G3DSA:3.30.1780.10 4 310 2.5E-74 T 11-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 BED32_00485 da97831076e1f23862c2a11116ab2c48 312 PIRSF PIRSF001439 1 311 5.6E-54 T 11-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Pfam PF13328 HD domain 26 175 4.1E-53 T 11-10-2018 IPR003607 HD/PDEase domain BED32_21180 9d81fd9224608d94be482c82d7c09384 700 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 696 2.0E-286 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Pfam PF02824 TGS domain 388 447 1.2E-20 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Gene3D G3DSA:1.10.3210.10 3 190 1.0E-80 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SUPERFAMILY SSF109604 3 190 2.39E-75 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.1E-35 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SUPERFAMILY SSF81271 375 447 6.32E-21 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Pfam PF13291 ACT domain 620 697 1.4E-15 T 11-10-2018 IPR002912 ACT domain BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Gene3D G3DSA:3.30.460.10 193 325 5.7E-48 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Gene3D G3DSA:3.30.70.260 621 700 2.3E-13 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SUPERFAMILY SSF55021 627 697 3.41E-5 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SMART SM00471 41 153 1.3E-11 T 11-10-2018 IPR003607 HD/PDEase domain BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SUPERFAMILY SSF81301 180 392 4.41E-62 T 11-10-2018 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 SMART SM00954 235 345 3.0E-62 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_21180 9d81fd9224608d94be482c82d7c09384 700 Gene3D G3DSA:3.10.20.30 381 455 1.2E-29 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_16095 2a7fb6277e314fc5a0c4ce17e5083b45 224 PIRSF PIRSF008159 7 224 3.4E-73 T 11-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, BED32_16095 2a7fb6277e314fc5a0c4ce17e5083b45 224 Pfam PF06226 Protein of unknown function (DUF1007) 25 223 1.2E-63 T 11-10-2018 IPR010412 Protein of unknown function DUF1007 BED32_05170 8c07f1fab2d3a6cc41dd0585bf92a314 128 Gene3D G3DSA:3.10.450.50 1 128 1.4E-49 T 11-10-2018 BED32_05170 8c07f1fab2d3a6cc41dd0585bf92a314 128 Pfam PF11533 Protein of unknown function (DUF3225) 6 127 2.5E-59 T 11-10-2018 IPR024507 Protein of unknown function DUF3225 BED32_05170 8c07f1fab2d3a6cc41dd0585bf92a314 128 SUPERFAMILY SSF54427 5 126 3.6E-39 T 11-10-2018 IPR032710 NTF2-like domain superfamily BED32_16355 f99105978a9f7ee66ac761e5f6b82c3b 77 Gene3D G3DSA:3.10.20.280 1 71 2.9E-25 T 11-10-2018 IPR037021 RnfH superfamily BED32_16355 f99105978a9f7ee66ac761e5f6b82c3b 77 Pfam PF03658 RnfH family Ubiquitin 2 69 7.1E-27 T 11-10-2018 IPR005346 RnfH protein BED32_16355 f99105978a9f7ee66ac761e5f6b82c3b 77 SUPERFAMILY SSF54285 2 61 3.71E-19 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BED32_16355 f99105978a9f7ee66ac761e5f6b82c3b 77 Hamap MF_00460 Protein RnfH [rnfH]. 1 77 15.894 T 11-10-2018 IPR005346 RnfH protein BED32_20620 5d3f263a1508a01680599c92b5776290 255 Gene3D G3DSA:2.60.40.10 35 154 4.4E-35 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_20620 5d3f263a1508a01680599c92b5776290 255 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 111 128 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_20620 5d3f263a1508a01680599c92b5776290 255 SUPERFAMILY SSF49584 160 247 1.02E-18 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_20620 5d3f263a1508a01680599c92b5776290 255 Gene3D G3DSA:2.60.40.10 156 247 2.2E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_20620 5d3f263a1508a01680599c92b5776290 255 SUPERFAMILY SSF49354 35 154 1.18E-32 T 11-10-2018 IPR008962 PapD-like superfamily BED32_20620 5d3f263a1508a01680599c92b5776290 255 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 176 233 4.7E-13 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_20620 5d3f263a1508a01680599c92b5776290 255 PRINTS PR00969 Pili chaperone signature 135 150 6.7E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_20620 5d3f263a1508a01680599c92b5776290 255 PRINTS PR00969 Pili chaperone signature 171 186 6.7E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_20620 5d3f263a1508a01680599c92b5776290 255 PRINTS PR00969 Pili chaperone signature 82 103 6.7E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_20620 5d3f263a1508a01680599c92b5776290 255 PRINTS PR00969 Pili chaperone signature 112 129 6.7E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_20620 5d3f263a1508a01680599c92b5776290 255 PRINTS PR00969 Pili chaperone signature 36 45 6.7E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_20620 5d3f263a1508a01680599c92b5776290 255 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 153 1.2E-32 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 Gene3D G3DSA:1.20.1720.10 1 206 3.8E-47 T 11-10-2018 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 SUPERFAMILY SSF103473 2 486 6.02E-73 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 1 484 7.1E-210 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 Pfam PF07690 Major Facilitator Superfamily 5 399 4.3E-55 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 PRINTS PR01036 Tetracycline resistance protein TetB signature 4 28 6.3E-5 T 11-10-2018 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 PRINTS PR01036 Tetracycline resistance protein TetB signature 95 115 6.3E-5 T 11-10-2018 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 PRINTS PR01036 Tetracycline resistance protein TetB signature 125 149 6.3E-5 T 11-10-2018 BED32_05130 7433595509fcc560fb288ce962dc1f1e 498 PRINTS PR01036 Tetracycline resistance protein TetB signature 191 209 6.3E-5 T 11-10-2018 BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 Gene3D G3DSA:3.30.479.30 53 231 2.9E-15 T 11-10-2018 BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 SMART SM00244 18 225 1.3E-41 T 11-10-2018 IPR001107 Band 7 domain BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 PIRSF PIRSF005651 1 334 8.7E-107 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 Pfam PF01145 SPFH domain / Band 7 family 22 241 2.8E-34 T 11-10-2018 IPR001107 Band 7 domain BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 SUPERFAMILY SSF117892 56 231 1.96E-22 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily BED32_19205 8ed6b93c3472576436ba3ceadb70c7c0 334 TIGRFAM TIGR01932 hflC: HflC protein 1 325 2.3E-139 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 BED32_02690 36977b537125035ed1949fbf9aa6fa27 151 Pfam PF10772 Protein of unknown function (DUF2597) 9 141 4.7E-60 T 11-10-2018 IPR019708 Bacteriophage HP1, Orf24 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 SUPERFAMILY SSF51905 4 388 3.44E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 Gene3D G3DSA:3.50.50.60 1 254 6.8E-82 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 Gene3D G3DSA:3.50.50.60 258 404 1.0E-49 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 Pfam PF01494 FAD binding domain 4 347 4.1E-28 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 394 1.6E-138 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 298 311 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 299 315 2.1E-18 T 11-10-2018 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 284 299 2.1E-18 T 11-10-2018 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 2.1E-18 T 11-10-2018 BED32_17495 db42dd47fdc72e1b83e9ce3d2b53ad60 404 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 2.1E-18 T 11-10-2018 BED32_11270 7774ba2fa377fa55526d65af91aa6206 463 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 461 5.5E-204 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 BED32_11270 7774ba2fa377fa55526d65af91aa6206 463 SUPERFAMILY SSF52467 290 463 3.27E-78 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_11270 7774ba2fa377fa55526d65af91aa6206 463 PIRSF PIRSF000204 1 463 3.9E-238 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 BED32_11270 7774ba2fa377fa55526d65af91aa6206 463 Gene3D G3DSA:3.40.50.1220 287 463 1.6E-87 T 11-10-2018 BED32_09200 605b99e2273879272835dd5346afd3f6 443 Gene3D G3DSA:1.20.1250.20 20 224 9.9E-52 T 11-10-2018 BED32_09200 605b99e2273879272835dd5346afd3f6 443 SUPERFAMILY SSF103473 13 431 1.03E-77 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_09200 605b99e2273879272835dd5346afd3f6 443 Pfam PF07690 Major Facilitator Superfamily 37 397 8.3E-52 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_09200 605b99e2273879272835dd5346afd3f6 443 PIRSF PIRSF002808 9 443 1.1E-128 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BED32_09200 605b99e2273879272835dd5346afd3f6 443 Gene3D G3DSA:1.20.1250.20 241 437 1.3E-38 T 11-10-2018 BED32_02635 65e3683cfaf026deb2b4ea46db51e713 801 Pfam PF05840 Bacteriophage replication gene A protein (GPA) 144 461 8.2E-117 T 11-10-2018 IPR008766 Replication gene A protein GO:0006260 BED32_08925 316eeb6a1e5f6f7155bcfa7939852d36 554 SUPERFAMILY SSF51703 1 553 5.49E-290 T 11-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BED32_08925 316eeb6a1e5f6f7155bcfa7939852d36 554 Pfam PF02286 Dehydratase large subunit 1 551 0.0 T 11-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 BED32_08925 316eeb6a1e5f6f7155bcfa7939852d36 554 Gene3D G3DSA:3.20.20.350 1 554 0.0 T 11-10-2018 IPR036999 Diol/glycerol dehydratase, large subunit superfamily GO:0016836|GO:0031419 BED32_08925 316eeb6a1e5f6f7155bcfa7939852d36 554 ProDom PD025428 SUBUNIT GLYCEROL DEHYDRATASE LARGE LYASE DHAB ALPHA DIOL B12-DEPENDENT METABOLISM 8 549 0.0 T 11-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 BED32_08925 316eeb6a1e5f6f7155bcfa7939852d36 554 PIRSF PIRSF018507 1 554 0.0 T 11-10-2018 IPR003206 Diol/glycerol dehydratase, large subunit GO:0016836|GO:0031419 BED32_05195 92b358a52c818ca024c35fd2c0133369 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 36 214 1.1E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_05195 92b358a52c818ca024c35fd2c0133369 227 Gene3D G3DSA:1.10.3720.10 3 222 1.5E-47 T 11-10-2018 IPR035906 MetI-like superfamily BED32_05195 92b358a52c818ca024c35fd2c0133369 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 116 2.5E-25 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_05195 92b358a52c818ca024c35fd2c0133369 227 SUPERFAMILY SSF161098 15 208 4.58E-40 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 SUPERFAMILY SSF51556 54 350 2.77E-101 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 PIRSF PIRSF038994 1 381 2.5E-116 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 377 9.0E-163 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 SUPERFAMILY SSF51338 1 53 1.35E-19 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 Gene3D G3DSA:2.30.40.10 7 376 1.2E-137 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 Pfam PF01979 Amidohydrolase family 50 379 3.0E-41 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_07555 bcdbb565ca7d8d6be535d373dff64694 381 Gene3D G3DSA:3.20.20.140 55 344 1.2E-137 T 11-10-2018 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 Gene3D G3DSA:3.40.50.720 103 245 1.8E-82 T 11-10-2018 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 270 31.986 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 3.0E-23 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 Gene3D G3DSA:3.40.50.10860 6 255 1.8E-82 T 11-10-2018 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 271 5.0E-91 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 191 3.6E-10 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 SUPERFAMILY SSF51735 103 268 5.65E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_02075 d55eba47ecc2af6fccdce6f0b682b87c 273 SUPERFAMILY SSF53223 4 102 2.88E-30 T 11-10-2018 BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 SUPERFAMILY SSF46785 2 82 2.23E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 8.5E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 Gene3D G3DSA:1.10.10.10 1 86 1.4E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 Gene3D G3DSA:3.40.190.10 169 265 6.4E-50 T 11-10-2018 BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 Gene3D G3DSA:3.40.190.10 92 289 6.4E-50 T 11-10-2018 BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 Pfam PF03466 LysR substrate binding domain 94 294 2.5E-23 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_10415 265d0499687886b40c832f6a5a8c0a52 306 SUPERFAMILY SSF53850 91 293 3.8E-32 T 11-10-2018 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 412 3.1E-213 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 SUPERFAMILY SSF52540 63 402 2.04E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 SMART SM00994 12 51 1.0E-24 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 SMART SM00382 111 302 2.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 415 53.324 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 SUPERFAMILY SSF57716 13 48 5.84E-12 T 11-10-2018 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Pfam PF06689 ClpX C4-type zinc finger 13 50 1.2E-20 T 11-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 317 394 5.0E-17 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 SMART SM01086 317 412 5.8E-34 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Gene3D G3DSA:1.10.8.60 316 423 3.9E-42 T 11-10-2018 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Pfam PF07724 AAA domain (Cdc48 subfamily) 112 310 2.2E-48 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Gene3D G3DSA:3.30.50.30 2 52 9.3E-28 T 11-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily BED32_06085 b5680d25e625f6c2bf252f8c6ff454de 423 Gene3D G3DSA:3.40.50.300 62 315 2.3E-108 T 11-10-2018 BED32_02600 1e2c495f1da161fc7c34304abcd115d7 99 SUPERFAMILY SSF47413 4 54 6.4E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_02600 1e2c495f1da161fc7c34304abcd115d7 99 Gene3D G3DSA:1.10.260.40 1 99 1.5E-33 T 11-10-2018 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 SUPERFAMILY SSF53955 51 265 1.69E-80 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 Gene3D G3DSA:2.40.50.140 324 430 1.9E-33 T 11-10-2018 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 Pfam PF00905 Penicillin binding protein transpeptidase domain 437 615 8.6E-24 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 Gene3D G3DSA:1.10.3810.10 57 250 6.3E-81 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 Pfam PF17092 Penicillin-binding protein OB-like domain 324 433 2.5E-32 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 SUPERFAMILY SSF56601 219 842 8.35E-114 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 73 794 1.6E-173 T 11-10-2018 BED32_01590 c8bf6efe08939683e541a2aa356613a4 859 Pfam PF00912 Transglycosylase 63 237 1.6E-65 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_13430 6b73209df24d5a4d9620356179cd1759 138 SMART SM00881 10 104 7.7E-24 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_13430 6b73209df24d5a4d9620356179cd1759 138 Gene3D G3DSA:3.40.50.720 1 138 1.8E-40 T 11-10-2018 BED32_13430 6b73209df24d5a4d9620356179cd1759 138 Pfam PF13380 CoA binding domain 14 130 1.6E-36 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_13430 6b73209df24d5a4d9620356179cd1759 138 SUPERFAMILY SSF51735 2 135 7.16E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 Pfam PF07972 NrdI Flavodoxin like 5 123 7.5E-48 T 11-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 SUPERFAMILY SSF52218 1 132 1.88E-23 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 35.775 T 11-10-2018 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 PIRSF PIRSF005087 1 134 4.7E-55 T 11-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 Gene3D G3DSA:3.40.50.360 3 134 7.3E-47 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_16605 269076f2150d3f0dcbc8ae2afb96e175 134 TIGRFAM TIGR00333 nrdI: nrdI protein 5 132 1.1E-51 T 11-10-2018 IPR004465 Ribonucleotide reductase Class Ib, NrdI BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 PIRSF PIRSF029143 1 102 4.2E-49 T 11-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 Pfam PF04266 ASCH domain 6 98 1.4E-13 T 11-10-2018 IPR007374 ASCH domain BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 SUPERFAMILY SSF88697 2 100 8.95E-33 T 11-10-2018 IPR015947 PUA-like superfamily BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 SMART SM01022 5 101 3.7E-25 T 11-10-2018 IPR007374 ASCH domain BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 Gene3D G3DSA:2.30.130.30 1 102 4.9E-44 T 11-10-2018 BED32_12650 b70c5915a7ae1a32d33f0e7deddd9b23 102 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 1 102 31.784 T 11-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 BED32_20980 514983c479d03d17364747ac51b1266a 159 Pfam PF01467 Cytidylyltransferase-like 6 134 1.9E-22 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_20980 514983c479d03d17364747ac51b1266a 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 12 77 5.0E-4 T 11-10-2018 BED32_20980 514983c479d03d17364747ac51b1266a 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 3.3E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 3.3E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 3.3E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 3.3E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 3.3E-47 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 5.5E-58 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 Gene3D G3DSA:3.40.50.620 1 159 6.8E-55 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_20980 514983c479d03d17364747ac51b1266a 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 159 35.08 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 BED32_20980 514983c479d03d17364747ac51b1266a 159 SUPERFAMILY SSF52374 4 156 3.75E-43 T 11-10-2018 BED32_20980 514983c479d03d17364747ac51b1266a 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 63 3.4E-15 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_08365 63b847d8ad79b343843be02a2de33a46 251 SUPERFAMILY SSF69572 4 249 7.32E-84 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BED32_08365 63b847d8ad79b343843be02a2de33a46 251 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 10 248 2.8E-120 T 11-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 BED32_08365 63b847d8ad79b343843be02a2de33a46 251 Gene3D G3DSA:3.40.50.720 5 251 1.8E-86 T 11-10-2018 BED32_08365 63b847d8ad79b343843be02a2de33a46 251 Pfam PF00899 ThiF family 13 246 3.1E-61 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BED32_05015 832dea4064c85f26f1a96fa78b07ef7e 359 Pfam PF00793 DAHP synthetase I family 41 340 1.2E-105 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_05015 832dea4064c85f26f1a96fa78b07ef7e 359 Gene3D G3DSA:3.20.20.70 3 351 2.2E-156 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_05015 832dea4064c85f26f1a96fa78b07ef7e 359 PIRSF PIRSF001361 1 354 4.8E-164 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_05015 832dea4064c85f26f1a96fa78b07ef7e 359 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 349 8.9E-168 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_05015 832dea4064c85f26f1a96fa78b07ef7e 359 SUPERFAMILY SSF51569 8 347 5.22E-136 T 11-10-2018 BED32_01095 1013ee8c7a644450810966af78fbca2f 263 Pfam PF00563 EAL domain 32 248 5.4E-26 T 11-10-2018 IPR001633 EAL domain BED32_01095 1013ee8c7a644450810966af78fbca2f 263 SMART SM00052 23 253 9.3E-10 T 11-10-2018 IPR001633 EAL domain BED32_01095 1013ee8c7a644450810966af78fbca2f 263 SUPERFAMILY SSF141868 31 256 2.22E-28 T 11-10-2018 IPR035919 EAL domain superfamily BED32_01095 1013ee8c7a644450810966af78fbca2f 263 Gene3D G3DSA:3.20.20.450 26 258 3.0E-33 T 11-10-2018 IPR035919 EAL domain superfamily BED32_11325 a21a483507fbd031f17a71439c27f596 777 Pfam PF13208 TerB N-terminal domain 110 312 3.8E-52 T 11-10-2018 IPR025266 TerB, N-terminal BED32_11325 a21a483507fbd031f17a71439c27f596 777 Pfam PF15615 TerB-C domain 656 773 1.2E-9 T 11-10-2018 IPR028932 TerB-C domain BED32_11325 a21a483507fbd031f17a71439c27f596 777 SUPERFAMILY SSF158682 516 638 1.13E-15 T 11-10-2018 IPR029024 TerB-like BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Pfam PF01370 NAD dependent epimerase/dehydratase family 318 566 2.6E-43 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 SUPERFAMILY SSF51735 317 650 1.36E-70 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Gene3D G3DSA:3.40.50.12230 1 304 1.0E-105 T 11-10-2018 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Hamap MF_01166 Bifunctional polymyxin resistance protein ArnA [arnA]. 1 660 63.728 T 11-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Gene3D G3DSA:3.40.50.720 314 658 1.8E-124 T 11-10-2018 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 SUPERFAMILY SSF50486 204 304 8.48E-25 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Pfam PF02911 Formyl transferase, C-terminal domain 203 287 5.0E-17 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 SUPERFAMILY SSF53328 1 202 4.45E-56 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 PIRSF PIRSF036506 1 660 0.0 T 11-10-2018 IPR021168 Bifunctional polymyxin resistance protein, ArnA GO:0016742|GO:0055114 KEGG: 00520+2.1.2.13+1.1.1.305 BED32_10710 197da08f85d4db4b2c6cae75901f791f 672 Pfam PF00551 Formyl transferase 25 173 2.5E-24 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 3 21 1.4E-4 T 11-10-2018 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 Gene3D G3DSA:3.40.50.300 6 196 8.5E-74 T 11-10-2018 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 24 196 2.7E-80 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 28 196 3.2E-61 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 PIRSF PIRSF015617 1 196 1.2E-69 T 11-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 BED32_11965 cd4b5da0e4ac491270f51eb888681a00 196 SUPERFAMILY SSF52540 7 196 1.78E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10540 16a44c704688be0400bed7387f800bc3 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 105 182 3.4E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10540 16a44c704688be0400bed7387f800bc3 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 2.3E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10540 16a44c704688be0400bed7387f800bc3 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 7 18 2.3E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10540 16a44c704688be0400bed7387f800bc3 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 2.3E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10540 16a44c704688be0400bed7387f800bc3 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 2.3E-8 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10540 16a44c704688be0400bed7387f800bc3 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 11 190 5.3E-28 T 11-10-2018 BED32_10540 16a44c704688be0400bed7387f800bc3 221 Gene3D G3DSA:1.10.150.240 20 91 1.2E-59 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_10540 16a44c704688be0400bed7387f800bc3 221 Gene3D G3DSA:3.40.50.1000 10 202 1.2E-59 T 11-10-2018 IPR023214 HAD superfamily BED32_10540 16a44c704688be0400bed7387f800bc3 221 SUPERFAMILY SSF56784 7 216 2.49E-49 T 11-10-2018 IPR036412 HAD-like superfamily BED32_10540 16a44c704688be0400bed7387f800bc3 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 87 191 2.4E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_10530 1c74d316fd4e8b88757b1083197cd10c 110 Pfam PF07883 Cupin domain 35 92 2.4E-9 T 11-10-2018 IPR013096 Cupin 2, conserved barrel BED32_10530 1c74d316fd4e8b88757b1083197cd10c 110 PIRSF PIRSF029883 3 110 5.7E-29 T 11-10-2018 IPR025499 Pectin degradation protein KdgF BED32_10530 1c74d316fd4e8b88757b1083197cd10c 110 SUPERFAMILY SSF51182 8 109 5.54E-18 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_10530 1c74d316fd4e8b88757b1083197cd10c 110 Gene3D G3DSA:2.60.120.10 1 110 9.2E-33 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_08740 88f189f07156634f069592b2e81a625b 374 Pfam PF00155 Aminotransferase class I and II 47 352 3.1E-59 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_08740 88f189f07156634f069592b2e81a625b 374 Gene3D G3DSA:3.90.1150.10 10 348 1.6E-133 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_08740 88f189f07156634f069592b2e81a625b 374 Gene3D G3DSA:3.40.640.10 55 259 1.6E-133 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_08740 88f189f07156634f069592b2e81a625b 374 SUPERFAMILY SSF53383 7 353 2.53E-79 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_08740 88f189f07156634f069592b2e81a625b 374 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 356 54.805 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BED32_08740 88f189f07156634f069592b2e81a625b 374 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 212 221 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BED32_08740 88f189f07156634f069592b2e81a625b 374 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 12 353 1.1E-120 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 SMART SM00344 1 107 7.5E-25 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 Gene3D G3DSA:3.30.70.920 53 135 7.7E-18 T 11-10-2018 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.3E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.3E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.3E-11 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 1.5E-13 T 11-10-2018 BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 SUPERFAMILY SSF54909 62 135 1.56E-14 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 SUPERFAMILY SSF46785 1 61 4.67E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 Gene3D G3DSA:1.10.10.10 1 52 2.8E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09435 e2de470cecb76e1f310da3e653c07dba 152 Pfam PF01037 Lrp/AsnC ligand binding domain 67 132 3.9E-12 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BED32_08485 c1a9deed8f97e84bd9e6e1e1d5323d01 195 Pfam PF12838 4Fe-4S dicluster domain 39 89 8.2E-13 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_08485 c1a9deed8f97e84bd9e6e1e1d5323d01 195 SUPERFAMILY SSF54862 18 119 3.22E-24 T 11-10-2018 BED32_08485 c1a9deed8f97e84bd9e6e1e1d5323d01 195 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_08485 c1a9deed8f97e84bd9e6e1e1d5323d01 195 Gene3D G3DSA:3.30.70.3270 18 160 8.0E-26 T 11-10-2018 BED32_08485 c1a9deed8f97e84bd9e6e1e1d5323d01 195 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Pfam PF17193 MukF C-terminal domain 283 440 1.9E-78 T 11-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Pfam PF03882 MukF winged-helix domain 3 117 7.7E-59 T 11-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 1 440 55.416 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Gene3D G3DSA:1.10.10.10 24 118 1.2E-53 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Pfam PF17192 MukF middle domain 121 281 5.1E-85 T 11-10-2018 IPR033440 Chromosome partition protein MukF, middle domain BED32_13595 119f58d5e855c2e30dac7eab18136034 440 SUPERFAMILY SSF140570 119 281 1.96E-76 T 11-10-2018 IPR036141 MukF, middle domain superfamily BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Gene3D G3DSA:1.10.225.40 353 440 2.3E-41 T 11-10-2018 IPR038198 MukF, C-terminal domain superfamily BED32_13595 119f58d5e855c2e30dac7eab18136034 440 PIRSF PIRSF018282 1 440 1.3E-247 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 BED32_13595 119f58d5e855c2e30dac7eab18136034 440 SUPERFAMILY SSF46785 8 118 1.9E-50 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_13595 119f58d5e855c2e30dac7eab18136034 440 Gene3D G3DSA:1.20.58.590 119 311 1.7E-87 T 11-10-2018 IPR036141 MukF, middle domain superfamily BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 SUPERFAMILY SSF53850 89 296 5.58E-45 T 11-10-2018 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.6E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 Pfam PF03466 LysR substrate binding domain 88 293 6.3E-51 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 Gene3D G3DSA:3.40.190.10 164 267 6.1E-76 T 11-10-2018 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 Gene3D G3DSA:3.40.190.10 91 280 6.1E-76 T 11-10-2018 BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 SUPERFAMILY SSF46785 1 110 9.53E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_00685 aaa278a52d34d98b40cd6adf0e9045b9 310 Gene3D G3DSA:1.10.10.10 1 84 2.9E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21380 4af5d3ad92b4f53706ce0f55b1a40f0e 139 Gene3D G3DSA:3.40.1650.10 8 136 2.9E-38 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BED32_21380 4af5d3ad92b4f53706ce0f55b1a40f0e 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 32.792 T 11-10-2018 IPR023064 D-ribose pyranase GO:0016872 BED32_21380 4af5d3ad92b4f53706ce0f55b1a40f0e 139 SUPERFAMILY SSF102546 1 139 4.05E-45 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BED32_21380 4af5d3ad92b4f53706ce0f55b1a40f0e 139 Pfam PF05025 RbsD / FucU transport protein family 1 138 6.0E-50 T 11-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 Pfam PF00005 ABC transporter 21 169 2.4E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 3.2E-195 T 11-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 Gene3D G3DSA:3.40.50.300 1 232 1.1E-78 T 11-10-2018 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 SMART SM00930 265 340 5.5E-24 T 11-10-2018 IPR018449 NIL domain BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 SUPERFAMILY SSF55021 248 343 1.05E-23 T 11-10-2018 BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 Pfam PF09383 NIL domain 268 339 1.3E-17 T 11-10-2018 IPR018449 NIL domain BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 SMART SM00382 30 217 1.3E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 SUPERFAMILY SSF52540 1 240 3.47E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16735 3e9610e4d6e4603f84813b55dc3c4531 343 Gene3D G3DSA:3.30.70.260 233 343 1.1E-36 T 11-10-2018 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 Gene3D G3DSA:3.40.50.150 8 181 4.1E-57 T 11-10-2018 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 PIRSF PIRSF037565 1 375 8.8E-165 T 11-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 Pfam PF05175 Methyltransferase small domain 200 371 2.2E-52 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 SUPERFAMILY SSF53335 197 372 7.55E-23 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 Gene3D G3DSA:3.40.50.150 185 380 5.5E-49 T 11-10-2018 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 49.971 T 11-10-2018 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 BED32_03305 32ce916f71a4e6121e5a6c4154079be9 395 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 4.2E-31 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 2.5E-20 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 2.5E-20 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 2.5E-20 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.5E-28 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 SUPERFAMILY SSF55594 1 82 1.83E-27 T 11-10-2018 IPR035895 HPr-like superfamily BED32_15350 337ac4fe715ee06b689cfeed86da94bd 85 Gene3D G3DSA:3.30.1340.10 1 85 3.6E-35 T 11-10-2018 IPR035895 HPr-like superfamily BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 66 80 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 35 206 8.6E-58 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 SUPERFAMILY SSF55120 29 206 2.08E-41 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 Gene3D G3DSA:3.30.70.580 19 94 1.7E-27 T 11-10-2018 BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 Gene3D G3DSA:3.30.70.1560 95 195 2.1E-41 T 11-10-2018 BED32_12980 afc53a8cf9e71adcf8c7a9d7d6ded680 208 Pfam PF00849 RNA pseudouridylate synthase 60 176 7.8E-12 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01021 OMPA domain signature 111 127 3.7E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01021 OMPA domain signature 66 88 3.7E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01021 OMPA domain signature 96 111 3.7E-10 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 Gene3D G3DSA:3.30.1330.60 32 168 1.3E-39 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 SUPERFAMILY SSF103088 52 166 6.41E-31 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 Pfam PF00691 OmpA family 66 160 5.7E-16 T 11-10-2018 IPR006665 OmpA-like domain BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 111 128 1.9E-9 T 11-10-2018 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 149 169 1.9E-9 T 11-10-2018 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 82 108 1.9E-9 T 11-10-2018 BED32_18290 ae241d9c979ab4c3239907f5e2ed11f9 169 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 129 148 1.9E-9 T 11-10-2018 BED32_04870 c560914116aa615d4838898cb7482be8 205 Pfam PF12800 4Fe-4S binding domain 12 25 0.0022 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_04870 c560914116aa615d4838898cb7482be8 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_04870 c560914116aa615d4838898cb7482be8 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 4 163 1.8E-77 T 11-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B BED32_04870 c560914116aa615d4838898cb7482be8 205 Pfam PF13247 4Fe-4S dicluster domain 59 152 1.9E-26 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_04870 c560914116aa615d4838898cb7482be8 205 Gene3D G3DSA:3.30.70.20 2 204 3.0E-52 T 11-10-2018 BED32_04870 c560914116aa615d4838898cb7482be8 205 SUPERFAMILY SSF54862 2 200 5.44E-68 T 11-10-2018 BED32_03670 276479bf373f7240996bc8f39e1522ff 144 Gene3D G3DSA:1.20.1640.10 1 144 2.7E-44 T 11-10-2018 BED32_03670 276479bf373f7240996bc8f39e1522ff 144 Pfam PF00873 AcrB/AcrD/AcrF family 1 137 7.9E-25 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_03670 276479bf373f7240996bc8f39e1522ff 144 SUPERFAMILY SSF82866 1 141 4.97E-30 T 11-10-2018 BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 142 148 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 Gene3D G3DSA:3.40.50.150 18 217 2.4E-62 T 11-10-2018 BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 Pfam PF03602 Conserved hypothetical protein 95 30 205 2.9E-60 T 11-10-2018 BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 PIRSF PIRSF004553 29 209 1.1E-57 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 SUPERFAMILY SSF53335 29 207 1.7E-52 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_20200 3d6c811cfc7dbecfe15f4c00175e50a0 227 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 25 207 2.0E-61 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 BED32_06755 4900251a65ffdf799fccc3d24daf02b0 63 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 1 42 4.0E-15 T 11-10-2018 IPR024400 Protein of unknown function DUF2635 BED32_06755 4900251a65ffdf799fccc3d24daf02b0 63 Pfam PF10948 Protein of unknown function (DUF2635) 3 47 5.0E-22 T 11-10-2018 IPR024400 Protein of unknown function DUF2635 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 Gene3D G3DSA:1.10.10.10 6 75 1.6E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 Gene3D G3DSA:3.40.1410.10 90 225 2.5E-35 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 SMART SM00866 92 229 3.9E-35 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 7 236 4.2E-106 T 11-10-2018 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 SUPERFAMILY SSF64288 59 235 1.73E-44 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 SUPERFAMILY SSF46785 5 75 2.25E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.3E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 Pfam PF07702 UTRA domain 92 229 6.1E-36 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 SMART SM00345 12 71 8.3E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 4.3E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_10020 ec6eceb10bccdb2ff686bbb33049981c 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 4.3E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_03715 829463e780376b14581ec8ce6818389b 270 Gene3D G3DSA:1.10.287.470 79 154 1.7E-7 T 11-10-2018 BED32_03715 829463e780376b14581ec8ce6818389b 270 Gene3D G3DSA:2.40.50.100 49 186 1.7E-7 T 11-10-2018 BED32_03715 829463e780376b14581ec8ce6818389b 270 Gene3D G3DSA:2.40.30.170 187 201 1.7E-7 T 11-10-2018 BED32_08675 28e6116852626a14be45822717c1c0ca 400 Pfam PF00872 Transposase, Mutator family 10 373 4.1E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 1.3E-220 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SMART SM00959 5 47 8.6E-17 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Gene3D G3DSA:2.40.50.140 48 117 2.0E-35 T 11-10-2018 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SMART SM00357 52 118 2.0E-18 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Gene3D G3DSA:1.10.720.10 1 47 4.6E-24 T 11-10-2018 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 2.8E-16 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SUPERFAMILY SSF52540 90 371 2.66E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.9E-22 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SMART SM00382 170 355 2.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SUPERFAMILY SSF68912 1 46 6.67E-12 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 SUPERFAMILY SSF50249 48 125 5.57E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 249.503 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Gene3D G3DSA:3.40.50.300 130 417 7.3E-134 T 11-10-2018 BED32_20490 a824dec8b3ba8c868c073fea6540e8d4 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 3.2E-32 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 BED32_21495 b7f9cb5ebb07494a50daf7a11423ebeb 295 Gene3D G3DSA:1.10.3720.10 13 287 2.1E-28 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21495 b7f9cb5ebb07494a50daf7a11423ebeb 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 289 2.2E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_21495 b7f9cb5ebb07494a50daf7a11423ebeb 295 SUPERFAMILY SSF161098 31 285 1.12E-33 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21495 b7f9cb5ebb07494a50daf7a11423ebeb 295 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 293 3.3E-84 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 SUPERFAMILY SSF103473 19 469 1.23E-62 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 Gene3D G3DSA:1.20.1250.20 263 471 1.6E-17 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 269 294 1.4E-15 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 1.4E-15 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 1.4E-15 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 407 426 1.4E-15 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 1.4E-15 T 11-10-2018 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 Pfam PF07690 Major Facilitator Superfamily 30 416 2.3E-49 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_10410 c3d0d58961eebf13ff86e8fffae191f2 473 Gene3D G3DSA:1.20.1720.10 22 253 8.9E-46 T 11-10-2018 BED32_17445 e7adf76bd5339d24ccba0df9541ae234 88 SUPERFAMILY SSF109910 2 78 6.54E-28 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily BED32_17445 e7adf76bd5339d24ccba0df9541ae234 88 Pfam PF03937 Flavinator of succinate dehydrogenase 6 76 3.1E-26 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase BED32_17445 e7adf76bd5339d24ccba0df9541ae234 88 Gene3D G3DSA:1.10.150.250 1 88 1.1E-39 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily BED32_05785 d8203cfa33d187e915294261898471c9 2881 Pfam PF10091 Putative glucoamylase 1308 1515 2.8E-14 T 11-10-2018 IPR019282 Domain of unknown function DUF2329 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:1.50.10.140 1369 1523 4.0E-13 T 11-10-2018 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:1.50.10.140 996 1156 1.9E-10 T 11-10-2018 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 2379 2805 5.1E-123 T 11-10-2018 IPR033432 Glycosyl hydrolase 36, catalytic domain BED32_05785 d8203cfa33d187e915294261898471c9 2881 SUPERFAMILY SSF48208 2366 2877 9.52E-95 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:2.60.420.10 2388 2862 2.4E-193 T 11-10-2018 BED32_05785 d8203cfa33d187e915294261898471c9 2881 SUPERFAMILY SSF74650 2086 2350 4.71E-85 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:1.50.10.10 2393 2805 2.4E-193 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:2.70.98.40 1557 1848 9.4E-75 T 11-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily BED32_05785 d8203cfa33d187e915294261898471c9 2881 Gene3D G3DSA:2.70.98.40 2088 2384 9.9E-92 T 11-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily BED32_05785 d8203cfa33d187e915294261898471c9 2881 Pfam PF06165 Glycosyltransferase family 36 2109 2349 3.2E-77 T 11-10-2018 IPR010383 Glycosyl hydrolase 94 BED32_05785 d8203cfa33d187e915294261898471c9 2881 Pfam PF06165 Glycosyltransferase family 36 1567 1814 8.2E-67 T 11-10-2018 IPR010383 Glycosyl hydrolase 94 BED32_05785 d8203cfa33d187e915294261898471c9 2881 SUPERFAMILY SSF74650 1556 1817 3.08E-73 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_05785 d8203cfa33d187e915294261898471c9 2881 SMART SM01068 2086 2151 3.5E-34 T 11-10-2018 IPR009342 Putative carbohydrate binding domain BED32_05785 d8203cfa33d187e915294261898471c9 2881 SMART SM01068 1543 1604 8.6E-21 T 11-10-2018 IPR009342 Putative carbohydrate binding domain BED32_19795 961d9d3b415416109205c60bec675e2e 655 Pfam PF01964 Radical SAM ThiC family 154 602 3.3E-200 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BED32_19795 961d9d3b415416109205c60bec675e2e 655 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 153 606 99.982 T 11-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BED32_19795 961d9d3b415416109205c60bec675e2e 655 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 153 605 2.9E-224 T 11-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BED32_19795 961d9d3b415416109205c60bec675e2e 655 Gene3D G3DSA:3.20.20.540 224 537 2.2E-153 T 11-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BED32_19795 961d9d3b415416109205c60bec675e2e 655 Pfam PF13667 ThiC-associated domain 33 113 2.6E-33 T 11-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 Gene3D G3DSA:3.30.499.10 325 470 3.0E-51 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 Gene3D G3DSA:3.30.499.20 4 286 3.1E-100 T 11-10-2018 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 ProSitePatterns PS01244 Aconitase family signature 2. 399 412 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 Pfam PF00330 Aconitase family (aconitate hydratase) 8 457 1.0E-161 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 195 208 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 82 95 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 209 222 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 108 116 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 119 132 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 286 300 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 343 354 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 399 412 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 PRINTS PR00415 Aconitase family signature 133 148 3.0E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 465 9.7E-268 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 SUPERFAMILY SSF53732 1 465 2.88E-168 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 466 61.984 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 BED32_17970 a6304a4600776277ba0fd2e9cd7a51a5 470 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BED32_10745 1aec15c029d9230846399b5b6abe7db7 499 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 22 469 2.2E-154 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 BED32_10745 1aec15c029d9230846399b5b6abe7db7 499 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 19 485 45.135 T 11-10-2018 IPR003846 Uncharacterised protein family UPF0061 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Pfam PF00271 Helicase conserved C-terminal domain 267 384 1.3E-11 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 SMART SM00382 73 365 5.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 SMART SM00847 445 539 5.5E-35 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Gene3D G3DSA:3.40.50.300 234 402 5.0E-56 T 11-10-2018 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Gene3D G3DSA:1.20.120.1080 430 532 1.2E-17 T 11-10-2018 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Gene3D G3DSA:3.40.50.300 8 233 1.0E-74 T 11-10-2018 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 SUPERFAMILY SSF52540 55 581 3.8E-109 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 SMART SM00487 56 240 1.5E-26 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 SMART SM00490 286 385 2.0E-15 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Pfam PF00270 DEAD/DEAH box helicase 68 214 2.0E-6 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 1 1277 0.0 T 11-10-2018 IPR010222 RNA helicase HrpA GO:0004004 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Pfam PF04408 Helicase associated domain (HA2) 447 537 1.9E-16 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Pfam PF11898 Domain of unknown function (DUF3418) 693 1276 8.2E-237 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal BED32_11205 c4dddcc2496ff4cf6c322723bfcc6bcb 1280 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 602 678 3.0E-18 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 SUPERFAMILY SSF52518 316 503 2.95E-60 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Gene3D G3DSA:3.40.50.970 317 486 1.1E-67 T 11-10-2018 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Pfam PF02780 Transketolase, C-terminal domain 494 610 9.1E-26 T 11-10-2018 IPR033248 Transketolase, C-terminal domain BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 2.0E-117 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 619 46.103 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 SMART SM00861 319 483 1.5E-65 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 SUPERFAMILY SSF52518 9 381 1.52E-76 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 SUPERFAMILY SSF52922 491 618 4.19E-33 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Gene3D G3DSA:3.40.50.920 494 619 3.6E-45 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 619 0.0 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_05985 4c0e0f81c1e458597dce4932ede06328 619 Pfam PF02779 Transketolase, pyrimidine binding domain 320 479 3.4E-39 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_07400 420639732dbbe67c7a688118997a9d00 403 Gene3D G3DSA:2.60.410.10 292 383 1.6E-27 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07400 420639732dbbe67c7a688118997a9d00 403 SUPERFAMILY SSF56601 9 292 3.06E-78 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_07400 420639732dbbe67c7a688118997a9d00 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 72 83 4.4E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_07400 420639732dbbe67c7a688118997a9d00 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 131 148 4.4E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_07400 420639732dbbe67c7a688118997a9d00 403 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 158 171 4.4E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_07400 420639732dbbe67c7a688118997a9d00 403 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 39 272 1.3E-98 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BED32_07400 420639732dbbe67c7a688118997a9d00 403 SUPERFAMILY SSF69189 292 385 4.51E-25 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07400 420639732dbbe67c7a688118997a9d00 403 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 292 383 5.1E-25 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07400 420639732dbbe67c7a688118997a9d00 403 SMART SM00936 292 383 6.2E-34 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_07400 420639732dbbe67c7a688118997a9d00 403 Gene3D G3DSA:3.40.710.10 30 291 1.3E-89 T 11-10-2018 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Pfam PF03144 Elongation factor Tu domain 2 205 275 2.6E-11 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Gene3D G3DSA:3.30.70.870 286 367 2.7E-35 T 11-10-2018 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Gene3D G3DSA:3.30.70.2570 479 553 6.1E-34 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 2.1E-49 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 169 3.7E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 SUPERFAMILY SSF52540 2 234 1.83E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.3E-52 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 PRINTS PR00315 GTP-binding elongation factor signature 90 101 4.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 PRINTS PR00315 GTP-binding elongation factor signature 126 135 4.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 PRINTS PR00315 GTP-binding elongation factor signature 6 19 4.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 PRINTS PR00315 GTP-binding elongation factor signature 74 84 4.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 PRINTS PR00315 GTP-binding elongation factor signature 49 57 4.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Gene3D G3DSA:2.40.30.10 186 285 3.2E-34 T 11-10-2018 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Gene3D G3DSA:3.30.70.3380 368 478 1.0E-39 T 11-10-2018 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 SUPERFAMILY SSF54980 292 370 2.48E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 1.0E-300 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 SUPERFAMILY SSF54980 399 493 1.01E-24 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 307.989 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Pfam PF00679 Elongation factor G C-terminus 399 482 7.8E-20 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like BED32_16255 98fddce7f27f5eadbc24d5e410f9828a 599 Gene3D G3DSA:3.40.50.300 1 185 7.9E-71 T 11-10-2018 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 SUPERFAMILY SSF51430 2 259 3.4E-80 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 Gene3D G3DSA:3.20.20.100 1 267 1.6E-90 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 Pfam PF00248 Aldo/keto reductase family 9 250 1.3E-50 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 5.0E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 5.0E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 5.0E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 5.0E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 5.0E-46 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BED32_16685 beb32968ed133b342fc9f6a4411beb42 267 PIRSF PIRSF000097 1 265 3.9E-67 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 47 70 4.5E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 26 39 4.5E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 Gene3D G3DSA:1.10.10.60 12 72 8.7E-26 T 11-10-2018 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 72 4.1E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 SUPERFAMILY SSF46689 14 92 1.18E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_08060 8614983a44fc575119e5e162a2a208bc 236 ProSitePatterns PS01081 TetR-type HTH domain signature. 38 68 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BED32_08060 8614983a44fc575119e5e162a2a208bc 236 Pfam PF09209 Domain of unknown function (DUF1956) 106 230 1.5E-32 T 11-10-2018 IPR015292 Transcription regulator YbiH, C-terminal BED32_08060 8614983a44fc575119e5e162a2a208bc 236 SUPERFAMILY SSF48498 102 231 2.13E-33 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_08060 8614983a44fc575119e5e162a2a208bc 236 Gene3D G3DSA:1.10.357.10 73 236 8.9E-48 T 11-10-2018 BED32_16440 57566b53a63598a41c0817d86948ca90 391 Gene3D G3DSA:3.40.50.720 238 385 1.3E-26 T 11-10-2018 BED32_16440 57566b53a63598a41c0817d86948ca90 391 PRINTS PR00169 Potassium channel signature 49 69 2.7E-5 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BED32_16440 57566b53a63598a41c0817d86948ca90 391 PRINTS PR00169 Potassium channel signature 195 221 2.7E-5 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BED32_16440 57566b53a63598a41c0817d86948ca90 391 PRINTS PR00169 Potassium channel signature 166 188 2.7E-5 T 11-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 BED32_16440 57566b53a63598a41c0817d86948ca90 391 Gene3D G3DSA:1.10.287.70 140 221 4.7E-14 T 11-10-2018 BED32_16440 57566b53a63598a41c0817d86948ca90 391 SUPERFAMILY SSF51735 239 376 4.04E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_16440 57566b53a63598a41c0817d86948ca90 391 Pfam PF02254 TrkA-N domain 243 356 1.4E-14 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BED32_16440 57566b53a63598a41c0817d86948ca90 391 SUPERFAMILY SSF81324 118 263 9.42E-18 T 11-10-2018 BED32_16440 57566b53a63598a41c0817d86948ca90 391 Pfam PF07885 Ion channel 148 218 8.0E-12 T 11-10-2018 IPR013099 Potassium channel domain BED32_19030 246b7d46128225405cfb9c854f6f7605 91 Pfam PF13693 Winged helix-turn-helix DNA-binding 7 81 3.5E-37 T 11-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain BED32_19030 246b7d46128225405cfb9c854f6f7605 91 SUPERFAMILY SSF47413 4 72 1.27E-28 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_19030 246b7d46128225405cfb9c854f6f7605 91 Gene3D G3DSA:1.10.260.40 3 72 3.7E-32 T 11-10-2018 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 2.1E-186 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 PIRSF PIRSF001555 1 329 8.0E-156 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 45.712 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 Pfam PF03590 Aspartate-ammonia ligase 9 244 1.3E-95 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 Gene3D G3DSA:3.30.930.10 1 330 1.5E-144 T 11-10-2018 BED32_21405 0d6bd89e880e1f5dd168f04157770a52 330 SUPERFAMILY SSF55681 5 329 4.26E-98 T 11-10-2018 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 Gene3D G3DSA:3.30.70.1630 25 195 1.9E-59 T 11-10-2018 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 SUPERFAMILY SSF101790 245 326 5.04E-27 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 Gene3D G3DSA:3.30.70.1400 28 114 1.9E-59 T 11-10-2018 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 188 253 2.2E-26 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 Pfam PF01571 Aminomethyltransferase folate-binding domain 32 216 5.2E-8 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 323 50.747 T 11-10-2018 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 PIRSF PIRSF006487 21 325 7.0E-10 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 Gene3D G3DSA:2.40.30.160 198 319 1.5E-43 T 11-10-2018 BED32_17450 fbb1c7654b6e3073e40fa2da9d0ca352 330 SUPERFAMILY SSF103025 19 243 1.73E-64 T 11-10-2018 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Gene3D G3DSA:3.40.50.1100 40 153 1.5E-108 T 11-10-2018 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 SUPERFAMILY SSF54631 343 452 1.89E-20 T 11-10-2018 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Pfam PF00571 CBS domain 399 448 1.9E-4 T 11-10-2018 IPR000644 CBS domain BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Pfam PF00571 CBS domain 344 388 7.6E-6 T 11-10-2018 IPR000644 CBS domain BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 SMART SM00116 342 389 1.3E-4 T 11-10-2018 IPR000644 CBS domain BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 SMART SM00116 406 451 31.0 T 11-10-2018 IPR000644 CBS domain BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Gene3D G3DSA:3.10.580.10 329 454 2.4E-19 T 11-10-2018 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 SUPERFAMILY SSF53686 4 320 1.83E-93 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Gene3D G3DSA:3.40.50.1100 9 309 1.5E-108 T 11-10-2018 BED32_13975 87cc165bae549563b1b3e8f8e4a49cc9 455 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 301 2.7E-64 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_03895 b3118432384409300054ce7684b6e05b 397 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 379 6.4E-92 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BED32_03895 b3118432384409300054ce7684b6e05b 397 Gene3D G3DSA:2.60.98.20 144 279 9.2E-26 T 11-10-2018 IPR037058 Flagellar hook protein FlgE superfamily BED32_03895 b3118432384409300054ce7684b6e05b 397 Pfam PF00460 Flagella basal body rod protein 6 33 4.5E-6 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03895 b3118432384409300054ce7684b6e05b 397 SUPERFAMILY SSF117143 73 358 6.93E-77 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BED32_03895 b3118432384409300054ce7684b6e05b 397 Pfam PF07559 Flagellar basal body protein FlaE 173 278 2.6E-16 T 11-10-2018 IPR011491 Flagellar hook protein FlgE BED32_03895 b3118432384409300054ce7684b6e05b 397 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 325 394 7.9E-17 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Gene3D G3DSA:3.40.50.720 84 249 1.4E-109 T 11-10-2018 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Pfam PF11890 Domain of unknown function (DUF3410) 281 361 3.3E-31 T 11-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 SUPERFAMILY SSF52283 7 121 4.46E-16 T 11-10-2018 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 272 4.3E-17 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 100 248 6.6E-31 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 349 44.005 T 11-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 111 138 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 189 205 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 SUPERFAMILY SSF51735 83 249 1.61E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Gene3D G3DSA:3.40.50.720 2 269 1.4E-109 T 11-10-2018 BED32_14780 321366a86e4a4260a9ceb4c3905186e2 367 Gene3D G3DSA:3.30.1370.170 285 366 4.2E-33 T 11-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 Pfam PF00361 Proton-conducting membrane transporter 134 430 5.4E-70 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 174 198 1.2E-35 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 389 415 1.2E-35 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 139 158 1.2E-35 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 249 273 1.2E-35 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 337 356 1.2E-35 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14555 e1c0904db890e9e9dcdd018cf09b8768 512 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 496 3.0E-180 T 11-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_17675 9a89afe109ac388949526fa52ab1e049 435 SUPERFAMILY SSF88713 205 403 4.26E-30 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BED32_17675 9a89afe109ac388949526fa52ab1e049 435 Gene3D G3DSA:3.20.20.370 174 417 4.3E-61 T 11-10-2018 BED32_17675 9a89afe109ac388949526fa52ab1e049 435 Pfam PF01522 Polysaccharide deacetylase 242 380 3.0E-19 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 PIRSF PIRSF037167 2 307 1.4E-146 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 SUPERFAMILY SSF53335 15 293 3.35E-48 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 52.638 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 4.7E-136 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 303 5.0E-98 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 Pfam PF05175 Methyltransferase small domain 133 215 5.3E-15 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 BED32_14915 fe99162df0328c1f4234b3b292bb2f8b 310 Gene3D G3DSA:3.40.50.150 109 276 4.8E-43 T 11-10-2018 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Gene3D G3DSA:1.20.1480.50 165 254 1.3E-8 T 11-10-2018 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Pfam PF00072 Response regulator receiver domain 670 781 1.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Gene3D G3DSA:1.20.120.160 840 952 4.1E-28 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SMART SM00387 403 519 4.3E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF52172 531 651 3.92E-5 T 11-10-2018 IPR011006 CheY-like superfamily BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 355 9.7E-19 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Pfam PF01627 Hpt domain 862 942 2.9E-11 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF55874 345 516 2.62E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 31 176 1.2E-57 T 11-10-2018 IPR019247 Histidine kinase BarA, N-terminal BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF158472 199 248 1.57E-5 T 11-10-2018 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Gene3D G3DSA:3.30.565.10 357 522 1.7E-48 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SMART SM00073 852 944 7.0E-5 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF47226 764 943 6.67E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Gene3D G3DSA:1.10.287.130 255 354 5.2E-28 T 11-10-2018 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Gene3D G3DSA:3.40.50.2300 655 787 2.0E-33 T 11-10-2018 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 403 517 7.2E-29 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SMART SM00304 199 251 2.6E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF47384 277 357 4.9E-21 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SUPERFAMILY SSF52172 668 789 4.41E-33 T 11-10-2018 IPR011006 CheY-like superfamily BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SMART SM00448 668 781 2.5E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 503 516 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 458 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 462 472 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 497 1.1E-13 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_17555 c2d42f0858b16bc82213a99be7d8e416 954 SMART SM00388 291 356 8.3E-22 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_04975 1e7babff963122180d3949b34431f14f 453 SUPERFAMILY SSF52540 42 354 1.42E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04975 1e7babff963122180d3949b34431f14f 453 Pfam PF00448 SRP54-type protein, GTPase domain 100 295 8.3E-75 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 SUPERFAMILY SSF47446 298 431 6.02E-46 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 Gene3D G3DSA:1.10.260.30 328 450 1.4E-45 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 SMART SM00962 100 296 1.5E-115 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 Pfam PF02978 Signal peptide binding domain 329 427 1.0E-32 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 SMART SM00382 99 247 6.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04975 1e7babff963122180d3949b34431f14f 453 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 3.7E-23 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 Gene3D G3DSA:3.40.50.300 90 285 3.4E-123 T 11-10-2018 BED32_04975 1e7babff963122180d3949b34431f14f 453 Gene3D G3DSA:1.20.120.140 4 305 3.4E-123 T 11-10-2018 BED32_04975 1e7babff963122180d3949b34431f14f 453 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.74 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 SMART SM00963 1 86 1.5E-37 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 BED32_04975 1e7babff963122180d3949b34431f14f 453 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 7.5E-179 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 SUPERFAMILY SSF49584 153 242 6.28E-24 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 Gene3D G3DSA:2.60.40.10 149 242 3.8E-22 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 PRINTS PR00969 Pili chaperone signature 125 140 1.2E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 PRINTS PR00969 Pili chaperone signature 72 93 1.2E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 PRINTS PR00969 Pili chaperone signature 164 179 1.2E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 PRINTS PR00969 Pili chaperone signature 26 35 1.2E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 PRINTS PR00969 Pili chaperone signature 102 119 1.2E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 SUPERFAMILY SSF49354 21 143 3.4E-37 T 11-10-2018 IPR008962 PapD-like superfamily BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 Gene3D G3DSA:2.60.40.10 25 144 1.3E-38 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 101 118 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 26 143 1.8E-35 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_04680 eccde9f149c734785feccc46ce2a41e2 248 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 169 230 9.0E-16 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_10320 22989cc391406365a7301b1f691c1957 356 Gene3D G3DSA:1.10.8.350 71 236 2.6E-86 T 11-10-2018 BED32_10320 22989cc391406365a7301b1f691c1957 356 Pfam PF13406 Transglycosylase SLT domain 61 352 4.8E-105 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 BED32_10320 22989cc391406365a7301b1f691c1957 356 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 60 355 3.9E-118 T 11-10-2018 IPR011970 Lytic murein transglycosylase BED32_10320 22989cc391406365a7301b1f691c1957 356 SUPERFAMILY SSF53955 55 354 2.81E-97 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_10320 22989cc391406365a7301b1f691c1957 356 Gene3D G3DSA:1.10.530.10 103 351 2.6E-86 T 11-10-2018 BED32_02475 bfcdbd440d47bd948706e078df92a209 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 154 3.7E-44 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BED32_02475 bfcdbd440d47bd948706e078df92a209 162 PIRSF PIRSF018472 1 162 1.9E-58 T 11-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type BED32_02475 bfcdbd440d47bd948706e078df92a209 162 Pfam PF04093 rod shape-determining protein MreD 6 154 2.7E-43 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 1.5E-95 T 11-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 Pfam PF00813 FliP family 13 211 2.7E-67 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_00390 b75eb9358726ad73c8417c06b1f6eedc 217 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 9.6E-72 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_07170 916e69e1b50854813d2c84859e442fd9 371 Gene3D G3DSA:2.30.300.10 60 111 8.4E-7 T 11-10-2018 BED32_07170 916e69e1b50854813d2c84859e442fd9 371 SUPERFAMILY SSF69279 29 197 3.32E-17 T 11-10-2018 BED32_07170 916e69e1b50854813d2c84859e442fd9 371 Gene3D G3DSA:3.55.50.10 112 192 8.4E-7 T 11-10-2018 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 PRINTS PR00095 Anthranilate synthase component I signature 444 458 1.5E-24 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 PRINTS PR00095 Anthranilate synthase component I signature 364 377 1.5E-24 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 PRINTS PR00095 Anthranilate synthase component I signature 350 363 1.5E-24 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 PRINTS PR00095 Anthranilate synthase component I signature 459 473 1.5E-24 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 17 515 1.4E-247 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 Gene3D G3DSA:3.60.120.10 1 520 4.8E-198 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 PIRSF PIRSF001373 1 520 3.2E-251 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 Pfam PF04715 Anthranilate synthase component I, N terminal region 19 193 1.3E-16 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11990 9998b5c4f28f912929cd55585cd26827 520 Pfam PF00425 chorismate binding enzyme 242 502 2.2E-84 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BED32_11990 9998b5c4f28f912929cd55585cd26827 520 SUPERFAMILY SSF56322 7 515 2.22E-165 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_12855 fffe5ce849fb96ddc2d4b4d677bcc999 129 Gene3D G3DSA:1.20.1270.180 17 127 3.3E-28 T 11-10-2018 BED32_12855 fffe5ce849fb96ddc2d4b4d677bcc999 129 Pfam PF07007 Lysozyme inhibitor LprI 26 114 8.9E-24 T 11-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal BED32_12855 fffe5ce849fb96ddc2d4b4d677bcc999 129 ProDom PD498860 RC0070 97 129 2.0E-4 T 11-10-2018 BED32_07345 23a05718121de737a1d777bba55d712b 214 Gene3D G3DSA:3.60.21.10 1 214 1.9E-59 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_07345 23a05718121de737a1d777bba55d712b 214 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 70 75 - T 11-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BED32_07345 23a05718121de737a1d777bba55d712b 214 SUPERFAMILY SSF56300 2 213 9.85E-48 T 11-10-2018 BED32_07345 23a05718121de737a1d777bba55d712b 214 Pfam PF00149 Calcineurin-like phosphoesterase 12 187 2.2E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 127 199 1.2E-11 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 SUPERFAMILY SSF75217 213 367 2.16E-39 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 Pfam PF00588 SpoU rRNA Methylase family 222 359 7.8E-31 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 Gene3D G3DSA:3.40.1280.10 200 368 2.2E-40 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 SUPERFAMILY SSF55315 119 196 1.0E-9 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 Gene3D G3DSA:3.30.1330.30 115 196 6.7E-5 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 SMART SM00967 126 201 2.2E-8 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BED32_05125 18b6d921155ddfc81fe79f6ec75819da 368 PIRSF PIRSF006280 1 368 2.6E-175 T 11-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 SUPERFAMILY SSF56801 15 459 1.96E-90 T 11-10-2018 BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 Gene3D G3DSA:3.30.300.30 364 441 3.4E-14 T 11-10-2018 BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 Gene3D G3DSA:3.40.50.12780 13 363 1.2E-66 T 11-10-2018 BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 36 453 7.1E-120 T 11-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 Pfam PF13193 AMP-binding enzyme C-terminal domain 377 443 7.7E-6 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 ProSitePatterns PS00455 Putative AMP-binding domain signature. 148 159 - T 11-10-2018 IPR020845 AMP-binding, conserved site BED32_14465 ef3b4be43dd72e12b8bd17edb4d87e12 464 Pfam PF00501 AMP-binding enzyme 16 365 1.5E-51 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 PIRSF PIRSF028788 1 209 1.7E-62 T 11-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 Gene3D G3DSA:3.30.1460.30 6 108 2.3E-27 T 11-10-2018 BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 Gene3D G3DSA:1.10.150.20 117 202 1.2E-18 T 11-10-2018 BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 Pfam PF04993 TfoX N-terminal domain 17 105 2.3E-25 T 11-10-2018 IPR007076 TfoX, N-terminal BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 Pfam PF04994 TfoX C-terminal domain 118 196 1.4E-22 T 11-10-2018 IPR007077 TfoX, C-terminal BED32_13460 01f40632f0dd0c0ab9dfe3f7c277a16a 211 SUPERFAMILY SSF159894 15 106 1.41E-27 T 11-10-2018 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 114 3.8E-11 T 11-10-2018 IPR000014 PAS domain BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 6.6E-51 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 SMART SM00283 269 516 1.1E-76 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 Gene3D G3DSA:1.10.287.950 216 517 4.6E-78 T 11-10-2018 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 Pfam PF08447 PAS fold 31 114 2.6E-13 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 Gene3D G3DSA:3.30.450.20 21 145 1.0E-22 T 11-10-2018 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 SUPERFAMILY SSF58104 242 515 9.16E-66 T 11-10-2018 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 SMART SM00086 80 121 0.0021 T 11-10-2018 IPR001610 PAC motif BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 SUPERFAMILY SSF55785 23 114 2.62E-24 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 3.1E-40 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 3.1E-40 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 3.1E-40 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_12910 a62bbbda82a650b5c2b83a57d772511c 519 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 3.1E-40 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 SUPERFAMILY SSF53790 11 261 2.49E-66 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 Gene3D G3DSA:3.40.1010.10 11 123 9.4E-28 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 19 33 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 16 261 1.6E-96 T 11-10-2018 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 Gene3D G3DSA:3.30.950.10 124 243 1.5E-47 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_08980 1a8f3afc929fbe2f73a640ac8ef8291f 263 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 15 221 1.5E-41 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_18550 e6f51799f2c4c37783bcba174a57507d 385 SUPERFAMILY SSF53756 37 380 5.96E-77 T 11-10-2018 BED32_18550 e6f51799f2c4c37783bcba174a57507d 385 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 111 351 1.3E-42 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 BED32_18550 e6f51799f2c4c37783bcba174a57507d 385 Gene3D G3DSA:3.40.50.2000 203 382 8.6E-40 T 11-10-2018 BED32_18550 e6f51799f2c4c37783bcba174a57507d 385 TIGRFAM TIGR02201 heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III 38 378 5.8E-114 T 11-10-2018 IPR011916 Lipopolysaccharide heptosyltransferase III, putative BED32_18550 e6f51799f2c4c37783bcba174a57507d 385 Gene3D G3DSA:3.40.50.2000 31 198 1.5E-35 T 11-10-2018 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 Pfam PF01047 MarR family 25 63 1.1E-6 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 Gene3D G3DSA:1.10.10.10 5 81 2.8E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 Gene3D G3DSA:3.30.420.40 93 386 4.4E-90 T 11-10-2018 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 Pfam PF00480 ROK family 88 392 6.4E-91 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 SUPERFAMILY SSF46785 14 79 1.53E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 Gene3D G3DSA:3.30.420.40 210 378 4.4E-90 T 11-10-2018 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 ProSitePatterns PS01125 ROK family signature. 220 247 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_07550 a7e88d7698ffecac949878fc4bb0be26 406 SUPERFAMILY SSF53067 88 394 1.52E-55 T 11-10-2018 BED32_01675 61d063fe998e6954111ca42b8390e198 431 Gene3D G3DSA:2.30.40.10 16 416 4.6E-183 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_01675 61d063fe998e6954111ca42b8390e198 431 Pfam PF07969 Amidohydrolase family 51 410 3.3E-52 T 11-10-2018 IPR013108 Amidohydrolase 3 BED32_01675 61d063fe998e6954111ca42b8390e198 431 SUPERFAMILY SSF51338 11 70 7.31E-9 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_01675 61d063fe998e6954111ca42b8390e198 431 SUPERFAMILY SSF51556 62 381 1.45E-106 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_01675 61d063fe998e6954111ca42b8390e198 431 Gene3D G3DSA:3.20.20.140 63 370 4.6E-183 T 11-10-2018 BED32_07925 b18e8ce9d8f8a85ba4ec315f1e39c3d5 272 Pfam PF02517 CAAX protease self-immunity 173 259 9.2E-18 T 11-10-2018 IPR003675 CAAX amino terminal protease GO:0016020 Reactome: R-HSA-5689880 BED32_15555 033e3e8127f73bd4b65ae15f7aa58e5f 234 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 25 181 2.0E-36 T 11-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 BED32_15555 033e3e8127f73bd4b65ae15f7aa58e5f 234 SUPERFAMILY SSF55166 18 184 4.71E-20 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_15555 033e3e8127f73bd4b65ae15f7aa58e5f 234 Gene3D G3DSA:3.30.1380.10 4 202 1.5E-32 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Hamap MF_02066 Cell division coordinator CpoB [cpoB]. 6 269 20.402 T 11-10-2018 IPR034706 Cell division coordinator CpoB GO:0051301 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 149 266 6.0E-44 T 11-10-2018 IPR014162 Cell division coordinator CpoB, C-terminal BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Pfam PF13174 Tetratricopeptide repeat 224 256 1.8E-7 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Pfam PF16331 TolA binding protein trimerisation 37 109 1.7E-25 T 11-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 SUPERFAMILY SSF48452 158 262 2.59E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Gene3D G3DSA:1.20.5.110 35 113 2.6E-34 T 11-10-2018 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Gene3D G3DSA:1.25.40.10 149 269 4.4E-32 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_07835 f44f999ef3cc34a8ef23a62fb9a40c2e 269 Pfam PF13432 Tetratricopeptide repeat 156 220 3.1E-10 T 11-10-2018 BED32_15015 fe5492084dad00b90d6745993938b8d2 388 Gene3D G3DSA:1.10.150.130 93 205 5.5E-32 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_15015 fe5492084dad00b90d6745993938b8d2 388 Pfam PF00589 Phage integrase family 206 370 2.3E-25 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_15015 fe5492084dad00b90d6745993938b8d2 388 Gene3D G3DSA:1.10.443.10 206 382 9.1E-21 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_15015 fe5492084dad00b90d6745993938b8d2 388 Gene3D G3DSA:3.30.160.390 1 88 1.2E-27 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily BED32_15015 fe5492084dad00b90d6745993938b8d2 388 Pfam PF13356 Arm DNA-binding domain 3 87 6.0E-15 T 11-10-2018 IPR025166 Integrase, DNA-binding domain BED32_15015 fe5492084dad00b90d6745993938b8d2 388 SUPERFAMILY SSF56349 98 380 1.15E-64 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Gene3D G3DSA:3.40.50.2300 1 124 7.5E-46 T 11-10-2018 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Pfam PF00072 Response regulator receiver domain 6 115 2.2E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 SMART SM00382 161 312 4.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 SUPERFAMILY SSF46689 381 470 9.68E-25 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Gene3D G3DSA:3.40.50.300 129 311 4.1E-66 T 11-10-2018 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Pfam PF00158 Sigma-54 interaction domain 141 307 4.8E-70 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 SUPERFAMILY SSF52172 6 186 4.84E-47 T 11-10-2018 IPR011006 CheY-like superfamily BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Pfam PF02954 Bacterial regulatory protein, Fis family 428 467 1.7E-15 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Gene3D G3DSA:1.10.8.60 312 378 2.6E-19 T 11-10-2018 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 SMART SM00448 4 115 3.1E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 SUPERFAMILY SSF52540 140 384 1.23E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 467 1.1E-245 T 11-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 433 450 8.0E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 470 8.0E-11 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_21265 63fa64145b5a0d9be3bf62a041017c5b 470 Gene3D G3DSA:1.10.10.60 380 470 2.2E-28 T 11-10-2018 BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 Gene3D G3DSA:3.90.1150.10 21 389 1.1E-147 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 401 8.6E-229 T 11-10-2018 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 213 232 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 Gene3D G3DSA:3.40.640.10 34 292 1.1E-147 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 SUPERFAMILY SSF53383 5 397 5.45E-110 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_16975 47b8c6ae5dbf3e7e7ff20e2836078616 401 Pfam PF00266 Aminotransferase class-V 21 388 2.3E-138 T 11-10-2018 IPR000192 Aminotransferase class V domain BED32_03985 db7448fe6f4fa8fb32ad8a53fbaeeb2a 288 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 2.5E-113 T 11-10-2018 IPR022522 Flagellar motor stator, MotA BED32_03985 db7448fe6f4fa8fb32ad8a53fbaeeb2a 288 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 11-10-2018 IPR000540 Flagellar motor protein MotA, conserved site BED32_03985 db7448fe6f4fa8fb32ad8a53fbaeeb2a 288 Pfam PF01618 MotA/TolQ/ExbB proton channel family 138 234 8.7E-11 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 SMART SM00382 26 213 2.6E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 SUPERFAMILY SSF52540 1 240 9.1E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 SUPERFAMILY SSF54631 268 306 9.83E-6 T 11-10-2018 BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 Gene3D G3DSA:3.10.580.10 260 309 2.2E-5 T 11-10-2018 BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 Pfam PF00005 ABC transporter 17 163 2.0E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08190 fd89b05e8fb41445b5fe08d2aa7a7323 314 Gene3D G3DSA:3.40.50.300 1 259 5.4E-75 T 11-10-2018 BED32_02370 b749b4e5c1f3d291a322af870074247f 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_02370 b749b4e5c1f3d291a322af870074247f 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_17255 b749b4e5c1f3d291a322af870074247f 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_17255 b749b4e5c1f3d291a322af870074247f 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_03395 b749b4e5c1f3d291a322af870074247f 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_03395 b749b4e5c1f3d291a322af870074247f 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_02775 b749b4e5c1f3d291a322af870074247f 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_02775 b749b4e5c1f3d291a322af870074247f 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 215 231 4.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 200 215 4.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 Pfam PF12833 Helix-turn-helix domain 154 231 1.5E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 Gene3D G3DSA:1.10.10.60 131 234 2.7E-25 T 11-10-2018 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 SMART SM00342 148 231 1.3E-22 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_19615 c38632268dc61adc7f122d2146cb2ee7 235 SUPERFAMILY SSF46689 185 232 4.08E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Gene3D G3DSA:3.30.980.40 714 818 4.3E-34 T 11-10-2018 BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 20 191 2.0E-44 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 SMART SM00843 1137 1202 1.1E-40 T 11-10-2018 IPR018541 FtsK gamma domain BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 SUPERFAMILY SSF52540 796 1108 6.11E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Pfam PF09397 Ftsk gamma domain 1139 1199 9.3E-27 T 11-10-2018 IPR018541 FtsK gamma domain BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 SUPERFAMILY SSF46785 1137 1202 2.04E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Pfam PF01580 FtsK/SpoIIIE family 822 1035 1.5E-72 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Gene3D G3DSA:1.10.10.10 1141 1204 3.6E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13745 d20ffb95741344df6bc284271e2e1c1f 1204 Gene3D G3DSA:3.40.50.300 819 1121 7.0E-124 T 11-10-2018 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 Gene3D G3DSA:3.40.50.720 98 286 2.4E-106 T 11-10-2018 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 SUPERFAMILY SSF51735 100 288 8.04E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 1.3E-61 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 7.6E-28 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 Hamap MF_01667 Glyoxylate/hydroxypyruvate reductase B [ghrB]. 1 324 67.303 T 11-10-2018 IPR023756 Glyoxylate/hydroxypyruvate reductase B GO:0016618|GO:0030267|GO:0055114 KEGG: 00260+1.1.1.81|KEGG: 00620+1.1.1.79|KEGG: 00630+1.1.1.79+1.1.1.81|MetaCyc: PWY-1622 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 176 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 Gene3D G3DSA:3.40.50.720 10 311 2.4E-106 T 11-10-2018 BED32_20790 6b1540a7cc02344dfabedc67e93fa270 326 SUPERFAMILY SSF52283 1 133 6.99E-30 T 11-10-2018 BED32_16030 7eec9885fac8e2be218d0bf64cbbd488 295 Pfam PF14581 SseB protein C-terminal domain 170 280 4.6E-34 T 11-10-2018 IPR027945 SseB protein, C-terminal BED32_16030 7eec9885fac8e2be218d0bf64cbbd488 295 Pfam PF07179 SseB protein N-terminal domain 22 154 2.1E-30 T 11-10-2018 IPR009839 SseB protein N-terminal domain BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 PIRSF PIRSF000164 13 336 7.2E-97 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 Gene3D G3DSA:3.20.20.70 1 336 7.5E-146 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 335 2.4E-92 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 2.7E-159 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.416 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 SUPERFAMILY SSF51395 1 334 9.53E-106 T 11-10-2018 BED32_13535 c58ea5c1b1e77b765ce0f0edb876dbe1 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 PIRSF PIRSF005917 2 288 1.2E-105 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.247 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 6.4E-26 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 Gene3D G3DSA:3.40.1010.10 2 120 1.1E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 SUPERFAMILY SSF53790 13 232 3.79E-83 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 11-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 Gene3D G3DSA:3.30.950.10 121 241 1.1E-41 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_03095 59d4e4cadecab090419ac2613b8630dd 299 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 284 6.8E-110 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 BED32_08255 3940f838ea71dd3932be087844ebd772 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 2.5E-18 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_08255 3940f838ea71dd3932be087844ebd772 86 SUPERFAMILY SSF159871 3 86 3.79E-26 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_08255 3940f838ea71dd3932be087844ebd772 86 Gene3D G3DSA:3.30.1660.10 22 86 3.4E-18 T 11-10-2018 IPR025543 Dodecin-like BED32_17625 570b1184a134c12bcb578743c893fb41 839 Pfam PF04408 Helicase associated domain (HA2) 414 474 6.3E-13 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 BED32_17625 570b1184a134c12bcb578743c893fb41 839 SMART SM00490 251 353 2.1E-16 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_17625 570b1184a134c12bcb578743c893fb41 839 Pfam PF00271 Helicase conserved C-terminal domain 230 352 4.6E-12 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_17625 570b1184a134c12bcb578743c893fb41 839 Gene3D G3DSA:3.40.50.300 6 204 9.7E-55 T 11-10-2018 BED32_17625 570b1184a134c12bcb578743c893fb41 839 SMART SM00487 27 211 1.3E-18 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_17625 570b1184a134c12bcb578743c893fb41 839 Gene3D G3DSA:3.40.50.300 205 371 9.3E-51 T 11-10-2018 BED32_17625 570b1184a134c12bcb578743c893fb41 839 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 29 836 0.0 T 11-10-2018 IPR010225 ATP-dependent helicase HrpB GO:0008026 BED32_17625 570b1184a134c12bcb578743c893fb41 839 SUPERFAMILY SSF52540 40 363 5.4E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17625 570b1184a134c12bcb578743c893fb41 839 PIRSF PIRSF005496 24 838 0.0 T 11-10-2018 BED32_17625 570b1184a134c12bcb578743c893fb41 839 Pfam PF08482 ATP-dependent helicase C-terminal 692 824 4.4E-52 T 11-10-2018 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal BED32_17625 570b1184a134c12bcb578743c893fb41 839 Gene3D G3DSA:1.20.120.1080 396 501 4.3E-10 T 11-10-2018 BED32_17625 570b1184a134c12bcb578743c893fb41 839 Pfam PF00270 DEAD/DEAH box helicase 40 185 5.6E-9 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_17625 570b1184a134c12bcb578743c893fb41 839 SMART SM00847 413 504 1.7E-15 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Gene3D G3DSA:3.80.30.20 145 378 2.6E-84 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 7.4E-156 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Pfam PF01938 TRAM domain 378 440 4.8E-18 T 11-10-2018 IPR002792 TRAM domain BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Gene3D G3DSA:3.40.50.12160 3 136 4.6E-32 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 SUPERFAMILY SSF102114 126 373 4.84E-64 T 11-10-2018 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Pfam PF04055 Radical SAM superfamily 151 325 3.4E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 74.166 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 438 3.7E-207 T 11-10-2018 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 SMART SM00729 147 367 6.5E-64 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_07500 960fa3190787e9fd7d7eb1c3d9a41eb6 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 3.8E-28 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 BED32_13330 5c78a18e5e3873cae9d028264fe927b0 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_13330 5c78a18e5e3873cae9d028264fe927b0 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_12565 036e390fc0de74b4c0719b60c58c94ab 437 Gene3D G3DSA:1.10.4160.10 17 433 1.9E-39 T 11-10-2018 IPR038271 Purine-cytosine permease superfamily BED32_12565 036e390fc0de74b4c0719b60c58c94ab 437 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 32 397 1.6E-21 T 11-10-2018 IPR001248 Purine-cytosine permease GO:0016020|GO:0022857|GO:0055085 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 SUPERFAMILY SSF53850 93 296 2.33E-40 T 11-10-2018 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 Gene3D G3DSA:1.10.10.10 7 94 2.4E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 Gene3D G3DSA:3.40.190.10 163 262 2.8E-60 T 11-10-2018 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 Pfam PF03466 LysR substrate binding domain 91 292 5.0E-39 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 Gene3D G3DSA:3.40.190.10 103 288 2.8E-60 T 11-10-2018 BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 SUPERFAMILY SSF46785 3 87 5.94E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_16965 0f5ca79a93d2136454d4e3b06a76a625 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 3.3E-21 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_20385 a0071c13a0520f62c5d974c9aae529cf 374 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 32 362 1.6E-143 T 11-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 6.5E-11 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 SUPERFAMILY SSF54523 28 138 1.57E-24 T 11-10-2018 BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 Gene3D G3DSA:3.30.700.10 7 141 1.8E-24 T 11-10-2018 BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 3.7E-10 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 Pfam PF00114 Pilin (bacterial filament) 36 135 2.4E-4 T 11-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 BED32_17795 77a2f0ab5cb6e5c5002c02ebfce18940 144 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_15720 1953125eef850c818e46bf57968aa2bd 689 SUPERFAMILY SSF56024 316 497 2.98E-55 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 SUPERFAMILY SSF56024 500 682 1.61E-68 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 1.2E-143 T 11-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 2.5E-31 T 11-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 27.197 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Pfam PF02503 Polyphosphate kinase middle domain 119 319 4.4E-42 T 11-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 SUPERFAMILY SSF140356 3 105 3.01E-34 T 11-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 PIRSF PIRSF015589 1 688 1.3E-240 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 SUPERFAMILY SSF143724 107 313 1.26E-59 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Gene3D G3DSA:3.30.870.10 500 686 1.0E-71 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Gene3D G3DSA:3.30.870.10 316 499 6.3E-74 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Gene3D G3DSA:1.20.58.310 9 109 5.1E-38 T 11-10-2018 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 3.8E-256 T 11-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 BED32_15720 1953125eef850c818e46bf57968aa2bd 689 Gene3D G3DSA:3.30.1840.10 110 307 4.4E-75 T 11-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 SMART SM00771 187 317 2.2E-79 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 210 324 2.0E-62 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 SUPERFAMILY SSF64383 188 321 8.63E-49 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 317 1.2E-82 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 319 24.841 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 190 316 1.1E-49 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 BED32_15335 912b2f2fbcd6bcaf7911b5fb9e140628 327 Gene3D G3DSA:3.30.1400.10 185 325 4.4E-55 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 328 2.6E-110 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 Gene3D G3DSA:3.40.50.20 1 70 3.7E-31 T 11-10-2018 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 Gene3D G3DSA:3.30.1490.20 94 155 1.0E-94 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 SUPERFAMILY SSF51246 278 353 1.18E-18 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 SUPERFAMILY SSF56059 79 274 2.6E-56 T 11-10-2018 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 325 32.694 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 SUPERFAMILY SSF52440 2 74 4.03E-15 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 Pfam PF02222 ATP-grasp domain 88 254 1.0E-53 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type BED32_06445 c6c1ef072068b3be27f0c19960b0c812 354 Gene3D G3DSA:3.30.470.20 79 320 1.0E-94 T 11-10-2018 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 189 2.7E-58 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 PIRSF PIRSF500136 1 420 8.1E-148 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 SUPERFAMILY SSF51735 5 198 9.24E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 324 419 4.4E-19 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Gene3D G3DSA:3.40.50.720 2 202 5.9E-64 T 11-10-2018 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 PIRSF PIRSF000124 4 418 5.0E-74 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Gene3D G3DSA:3.40.50.720 205 420 2.4E-59 T 11-10-2018 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 SMART SM00984 324 420 2.0E-24 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 SUPERFAMILY SSF48179 206 298 1.62E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 416 1.3E-118 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 SUPERFAMILY SSF52413 311 419 5.1E-26 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 3.0E-26 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 BED32_20465 5d88bb84d980c46abc2d4e20af65ae4e 420 Hamap MF_02029 UDP-N-acetyl-D-mannosamine dehydrogenase [wecC]. 1 420 79.35 T 11-10-2018 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC GO:0009246|GO:0089714 KEGG: 00520+1.1.1.336|MetaCyc: PWY-7335 BED32_17460 d4af4de9546179b4cb7097bf34b845e0 227 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 26 227 1.5E-71 T 11-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 BED32_17460 d4af4de9546179b4cb7097bf34b845e0 227 Pfam PF03006 Haemolysin-III related 23 220 1.7E-37 T 11-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 SUPERFAMILY SSF53822 60 340 3.73E-95 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 SUPERFAMILY SSF47413 1 59 2.25E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Pfam PF13377 Periplasmic binding protein-like domain 171 331 1.7E-41 T 11-10-2018 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Gene3D G3DSA:3.40.50.2300 162 324 6.4E-101 T 11-10-2018 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Gene3D G3DSA:3.40.50.2300 69 323 6.4E-101 T 11-10-2018 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Gene3D G3DSA:1.10.260.40 3 59 4.2E-25 T 11-10-2018 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 SMART SM00354 1 71 2.0E-36 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 63.452 T 11-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.6E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.6E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_10885 84ad1ddaaefbc0698aa46f5298119a14 341 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.8E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 PIRSF PIRSF018296 1 309 2.8E-134 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 Hamap MF_00611 Protein FdhE [fdhE]. 3 308 49.892 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 Pfam PF04216 Protein involved in formate dehydrogenase formation 23 306 1.1E-113 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 Gene3D G3DSA:3.90.1670.10 26 309 6.7E-92 T 11-10-2018 IPR024064 FdhE-like superfamily BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 SUPERFAMILY SSF144020 26 308 1.96E-95 T 11-10-2018 IPR024064 FdhE-like superfamily BED32_20655 f8d5dbfa75f509752ad839b7b26f199c 309 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 307 5.7E-120 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 2.5E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 2.5E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 2.5E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 162 2.7E-48 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 PIRSF PIRSF001467 1 164 1.1E-28 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 SUPERFAMILY SSF50891 1 162 1.2E-59 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_06460 be56340f18e7d7ea3efb85cba4b9dcb9 164 Gene3D G3DSA:2.40.100.10 1 164 7.1E-72 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 1.4E-47 T 11-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 183.344 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 1.8E-80 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Gene3D G3DSA:3.30.1490.20 137 201 5.4E-121 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 SUPERFAMILY SSF52440 2 122 3.16E-47 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 312 3.1E-139 T 11-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Gene3D G3DSA:3.40.50.20 7 114 5.4E-121 T 11-10-2018 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 SUPERFAMILY SSF56059 123 311 2.36E-57 T 11-10-2018 BED32_04380 aaf84ed4eb0db33ffb3a00c7f97388b1 317 Gene3D G3DSA:3.30.470.20 115 295 5.4E-121 T 11-10-2018 BED32_02785 d98388399a2fe29398be4297534aa75c 136 Pfam PF14760 Rnk N-terminus 4 43 2.0E-12 T 11-10-2018 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain BED32_02785 d98388399a2fe29398be4297534aa75c 136 Gene3D G3DSA:1.10.286.20 1 44 1.0E-25 T 11-10-2018 BED32_02785 d98388399a2fe29398be4297534aa75c 136 Gene3D G3DSA:3.10.50.30 46 136 6.6E-30 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BED32_02785 d98388399a2fe29398be4297534aa75c 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 50 123 5.7E-17 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BED32_02785 d98388399a2fe29398be4297534aa75c 136 SUPERFAMILY SSF54534 49 126 1.29E-17 T 11-10-2018 BED32_02785 d98388399a2fe29398be4297534aa75c 136 Hamap MF_00954 Regulator of nucleoside diphosphate kinase [rnk]. 1 136 43.026 T 11-10-2018 IPR028625 Regulator of nucleoside diphosphate kinase GO:0070063 BED32_02785 d98388399a2fe29398be4297534aa75c 136 PIRSF PIRSF006092 28 128 1.4E-22 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BED32_22005 9a71768e8dd071f85d409873e5c9e586 211 SUPERFAMILY SSF52540 1 207 2.71E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_22005 9a71768e8dd071f85d409873e5c9e586 211 Gene3D G3DSA:3.40.50.300 1 209 2.0E-22 T 11-10-2018 BED32_22005 9a71768e8dd071f85d409873e5c9e586 211 Pfam PF09140 ATPase MipZ 62 111 8.1E-5 T 11-10-2018 IPR015223 ATPase MipZ BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 7.8E-38 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 25.07 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 Gene3D G3DSA:2.40.50.140 1 84 4.2E-40 T 11-10-2018 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 76 7.0E-36 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 SUPERFAMILY SSF50249 5 82 1.54E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 9.2E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 9.2E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 9.2E-14 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 Pfam PF00366 Ribosomal protein S17 10 76 1.6E-33 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01920 ab3486e8cc1e6f3e1c2bc070f9871676 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_06195 b48e8603bc9eb08334b1e27eae3e8bec 251 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_06195 b48e8603bc9eb08334b1e27eae3e8bec 251 SUPERFAMILY SSF52540 16 221 7.68E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06195 b48e8603bc9eb08334b1e27eae3e8bec 251 Gene3D G3DSA:3.40.50.300 14 241 2.1E-50 T 11-10-2018 BED32_06195 b48e8603bc9eb08334b1e27eae3e8bec 251 SMART SM00382 41 223 5.9E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06195 b48e8603bc9eb08334b1e27eae3e8bec 251 Pfam PF00005 ABC transporter 38 173 5.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Gene3D G3DSA:1.25.40.10 45 269 4.2E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Gene3D G3DSA:1.25.40.10 279 350 4.6E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SMART SM00028 307 340 1.6 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SMART SM00028 465 498 0.74 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SMART SM00028 355 388 65.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SMART SM00028 389 422 0.047 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Pfam PF13432 Tetratricopeptide repeat 361 422 0.014 T 11-10-2018 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Pfam PF13432 Tetratricopeptide repeat 471 518 0.0012 T 11-10-2018 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Gene3D G3DSA:1.25.40.10 351 436 1.6E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SUPERFAMILY SSF48452 296 436 8.41E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Gene3D G3DSA:1.25.40.10 437 521 3.2E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Gene3D G3DSA:1.25.40.10 531 742 1.4E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SUPERFAMILY SSF48452 74 339 3.63E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 763 1103 4.1E-120 T 11-10-2018 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SUPERFAMILY SSF48452 466 621 8.43E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Pfam PF14559 Tetratricopeptide repeat 285 339 1.6E-7 T 11-10-2018 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 Pfam PF14559 Tetratricopeptide repeat 573 624 1.0E-8 T 11-10-2018 BED32_01045 fc288b4db9aa0dcc52290a4feeae3943 1124 SUPERFAMILY SSF48452 533 698 1.43E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 SUPERFAMILY SSF51161 255 437 9.98E-51 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 403 431 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 395 429 2.2E-6 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 267 299 1.5E-4 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 322 352 8.5E-4 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Pfam PF12804 MobA-like NTP transferase domain 8 123 1.1E-22 T 11-10-2018 IPR025877 MobA-like NTP transferase BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 6 455 1.1E-203 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Gene3D G3DSA:2.160.10.10 228 456 7.9E-71 T 11-10-2018 BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Gene3D G3DSA:3.90.550.10 1 227 1.7E-73 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 SUPERFAMILY SSF53448 5 252 3.42E-67 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_21475 4a6b6c9469cd19c915885b4c558c0974 456 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 5 452 43.043 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 Gene3D G3DSA:3.90.190.10 17 299 1.1E-31 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 SMART SM00404 172 291 3.9E-9 T 11-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 SMART SM00194 27 294 2.8E-4 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 84 97 2.4E-5 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 231 242 2.4E-5 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 133 149 2.4E-5 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 SUPERFAMILY SSF52799 70 296 1.7E-23 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 Pfam PF00102 Protein-tyrosine phosphatase 76 288 4.5E-15 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR00700 Protein tyrosine phosphatase signature 275 285 7.2E-8 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR00700 Protein tyrosine phosphatase signature 88 108 7.2E-8 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 PRINTS PR00700 Protein tyrosine phosphatase signature 230 248 7.2E-8 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_04460 3c53d3ef59df11b0588c09f479a83fd3 303 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 233 243 - T 11-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 Pfam PF01546 Peptidase family M20/M25/M40 69 477 1.9E-20 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 Pfam PF07687 Peptidase dimerisation domain 197 287 6.6E-6 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PIRSF PIRSF016599 1 482 7.3E-211 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 Gene3D G3DSA:3.40.630.10 374 483 7.5E-24 T 11-10-2018 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 SUPERFAMILY SSF53187 7 479 2.07E-65 T 11-10-2018 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 425 441 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 447 469 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 203 220 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 156 174 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 248 267 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 77 96 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 132 149 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 98 116 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 PRINTS PR00934 X-His dipeptidase (M25) signature 360 378 4.7E-98 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 Gene3D G3DSA:3.40.630.10 1 232 2.2E-63 T 11-10-2018 BED32_05730 09f542a0c0bca31bb5dee97932f09bae 483 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 5 479 6.3E-182 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 BED32_14330 0d8c29c10aa5cb7a3bdfdabce38bf986 80 Gene3D G3DSA:3.30.910.10 1 79 4.3E-16 T 11-10-2018 IPR036687 DinI-like superfamily BED32_14330 0d8c29c10aa5cb7a3bdfdabce38bf986 80 Pfam PF06183 DinI-like family 17 76 1.5E-22 T 11-10-2018 IPR010391 DNA damage-inducible protein DinI-like BED32_14330 0d8c29c10aa5cb7a3bdfdabce38bf986 80 SUPERFAMILY SSF54857 1 78 8.63E-23 T 11-10-2018 IPR036687 DinI-like superfamily BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 Pfam PF01163 RIO1 family 31 219 6.8E-43 T 11-10-2018 BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 11-10-2018 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 Gene3D G3DSA:3.30.200.20 16 126 6.6E-5 T 11-10-2018 BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 SMART SM00090 5 228 4.4E-15 T 11-10-2018 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1|Reactome: R-HSA-6791226 BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 SUPERFAMILY SSF56112 18 223 2.24E-21 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_12825 e9741266ca29b8b2e192ffc1e1b7700a 282 Gene3D G3DSA:1.10.510.10 135 221 9.8E-19 T 11-10-2018 BED32_03630 0f1da18f99c7a08ab397985a55895ed6 372 Gene3D G3DSA:3.40.50.300 146 364 2.2E-9 T 11-10-2018 BED32_03630 0f1da18f99c7a08ab397985a55895ed6 372 SUPERFAMILY SSF52540 143 330 2.06E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17140 cdd983d44b26ed8d073d7acc91dcd688 295 Pfam PF00753 Metallo-beta-lactamase superfamily 44 228 1.4E-7 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_17140 cdd983d44b26ed8d073d7acc91dcd688 295 SMART SM00849 43 228 4.0E-17 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_17140 cdd983d44b26ed8d073d7acc91dcd688 295 SUPERFAMILY SSF56281 27 251 3.91E-40 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_17140 cdd983d44b26ed8d073d7acc91dcd688 295 Gene3D G3DSA:3.60.15.10 25 262 5.2E-27 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Gene3D G3DSA:2.60.260.20 114 246 6.8E-39 T 11-10-2018 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Gene3D G3DSA:2.60.260.20 251 330 2.8E-29 T 11-10-2018 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 SUPERFAMILY SSF49493 112 259 4.45E-21 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 SUPERFAMILY SSF57938 131 208 1.23E-23 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Gene3D G3DSA:2.10.230.10 144 204 6.8E-39 T 11-10-2018 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 PRINTS PR00625 DnaJ domain signature 62 81 6.8E-32 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 PRINTS PR00625 DnaJ domain signature 25 40 6.8E-32 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 PRINTS PR00625 DnaJ domain signature 42 62 6.8E-32 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 PRINTS PR00625 DnaJ domain signature 7 25 6.8E-32 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 SMART SM00271 4 62 3.8E-28 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Gene3D G3DSA:1.10.287.110 1 113 8.7E-37 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 SUPERFAMILY SSF49493 256 341 5.23E-22 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 347 5.2E-141 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Pfam PF00226 DnaJ domain 5 67 9.3E-27 T 11-10-2018 IPR001623 DnaJ domain BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Pfam PF01556 DnaJ C terminal domain 118 330 3.9E-46 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Pfam PF00684 DnaJ central domain 144 204 2.4E-15 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 370 42.348 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 BED32_18175 73c7d3bcea511ccc41b7df369a24e60c 376 SUPERFAMILY SSF46565 1 106 3.14E-36 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_13625 f6835398e10456b8bfce80aea95167a4 69 PIRSF PIRSF002599 1 69 1.3E-17 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 SUPERFAMILY SSF50249 3 67 3.43E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13625 f6835398e10456b8bfce80aea95167a4 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 1.7E-19 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 PRINTS PR00050 Cold shock protein signature 42 60 3.2E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 PRINTS PR00050 Cold shock protein signature 6 21 3.2E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 PRINTS PR00050 Cold shock protein signature 27 36 3.2E-11 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 SMART SM00357 5 69 6.5E-12 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_13625 f6835398e10456b8bfce80aea95167a4 69 Gene3D G3DSA:2.40.50.140 5 68 2.1E-20 T 11-10-2018 BED32_04320 21f0d9e99c4346f9fd52a983d7311969 246 Pfam PF11101 Protein of unknown function (DUF2884) 29 245 3.0E-48 T 11-10-2018 IPR021307 Protein of unknown function DUF2884 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 SMART SM00434 11 499 8.7E-301 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 743 789 7.9E-15 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.2E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 588 637 5.7E-11 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 793 839 1.9E-13 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 693 737 1.7E-15 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 538 584 2.4E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Gene3D G3DSA:2.120.10.90 535 841 3.5E-132 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Gene3D G3DSA:3.90.199.10 33 521 1.2E-234 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Gene3D G3DSA:1.10.268.10 370 493 1.2E-234 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 840 0.0 T 11-10-2018 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 SUPERFAMILY SSF56719 30 521 6.28E-183 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 841 24.757 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 506 4.6E-153 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 SUPERFAMILY SSF101904 533 848 5.49E-115 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal BED32_14405 3adcd16467dd98e615246c6fbd25948e 885 Gene3D G3DSA:3.30.1360.40 236 333 1.2E-234 T 11-10-2018 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.369 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 1.0E-174 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 292 1.9E-149 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 Gene3D G3DSA:3.30.930.10 1 214 2.9E-110 T 11-10-2018 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 Gene3D G3DSA:1.20.58.180 215 297 1.2E-33 T 11-10-2018 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 SUPERFAMILY SSF55681 8 292 1.49E-133 T 11-10-2018 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20750 d5c2f6fb9368363eecf57a9a2a38c8c1 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_16765 e8412f510d8e54e3d21b97a52c692bd1 229 Pfam PF17185 NlpE C-terminal OB domain 138 227 5.5E-37 T 11-10-2018 IPR033450 NlpE, C-terminal OB domain BED32_16765 e8412f510d8e54e3d21b97a52c692bd1 229 Gene3D G3DSA:2.40.128.300 22 113 2.6E-27 T 11-10-2018 BED32_16765 e8412f510d8e54e3d21b97a52c692bd1 229 Pfam PF04170 NlpE N-terminal domain 40 125 1.7E-23 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE BED32_16765 e8412f510d8e54e3d21b97a52c692bd1 229 Gene3D G3DSA:2.40.50.540 140 229 1.9E-31 T 11-10-2018 IPR038139 NlpE, C-terminal domain superfamily BED32_06660 1ca3db4c08935f44bf4d61902775c060 105 Pfam PF16083 LydA holin phage, holin superfamily III 17 94 9.3E-20 T 11-10-2018 IPR032126 LydA-like holin BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 3.5E-253 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 Gene3D G3DSA:1.10.560.10 8 523 2.0E-237 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 Gene3D G3DSA:3.50.7.10 173 379 2.0E-237 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 SUPERFAMILY SSF52029 185 376 1.13E-81 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 Hamap MF_00600 60 kDa chaperonin [groL]. 2 549 41.438 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 SUPERFAMILY SSF48592 7 523 9.16E-76 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 SUPERFAMILY SSF54849 137 203 5.04E-24 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 Gene3D G3DSA:3.30.260.10 138 410 2.0E-237 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily BED32_19345 cbe331ef1c46fb52493228fc269db23e 550 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 525 2.4E-92 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 BED32_09160 56d2084b95504185f7add07adf170f55 194 Gene3D G3DSA:1.10.357.10 53 189 1.1E-35 T 11-10-2018 BED32_09160 56d2084b95504185f7add07adf170f55 194 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BED32_09160 56d2084b95504185f7add07adf170f55 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 6.0E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_09160 56d2084b95504185f7add07adf170f55 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 6.0E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_09160 56d2084b95504185f7add07adf170f55 194 Gene3D G3DSA:1.10.10.60 6 52 3.7E-17 T 11-10-2018 BED32_09160 56d2084b95504185f7add07adf170f55 194 SUPERFAMILY SSF48498 81 189 1.69E-23 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_09160 56d2084b95504185f7add07adf170f55 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 1.1E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_09160 56d2084b95504185f7add07adf170f55 194 SUPERFAMILY SSF46689 2 77 1.85E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_17760 4565126b158954be8037cd998bec7b76 527 SUPERFAMILY SSF51230 104 196 1.57E-23 T 11-10-2018 IPR011053 Single hybrid motif BED32_17760 4565126b158954be8037cd998bec7b76 527 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 296 526 5.2E-79 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 Pfam PF02817 e3 binding domain 223 258 4.3E-15 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 Gene3D G3DSA:4.10.320.10 223 268 3.6E-22 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 127 156 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 SUPERFAMILY SSF51230 1 94 1.83E-23 T 11-10-2018 IPR011053 Single hybrid motif BED32_17760 4565126b158954be8037cd998bec7b76 527 SUPERFAMILY SSF52777 285 526 5.78E-80 T 11-10-2018 BED32_17760 4565126b158954be8037cd998bec7b76 527 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 79 527 2.5E-228 T 11-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 BED32_17760 4565126b158954be8037cd998bec7b76 527 Pfam PF00364 Biotin-requiring enzyme 106 175 1.2E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment BED32_17760 4565126b158954be8037cd998bec7b76 527 Pfam PF00364 Biotin-requiring enzyme 4 73 1.2E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment BED32_17760 4565126b158954be8037cd998bec7b76 527 Gene3D G3DSA:3.30.559.10 279 527 5.7E-100 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 SUPERFAMILY SSF47005 217 262 2.22E-13 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BED32_17760 4565126b158954be8037cd998bec7b76 527 Gene3D G3DSA:2.40.50.100 103 182 1.5E-20 T 11-10-2018 BED32_17760 4565126b158954be8037cd998bec7b76 527 Gene3D G3DSA:2.40.50.100 1 80 2.3E-21 T 11-10-2018 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 5 379 1.5E-152 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 PIRSF PIRSF001434 1 381 6.6E-147 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 188 202 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 Gene3D G3DSA:3.40.640.10 2 247 4.7E-92 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 Gene3D G3DSA:3.90.1150.10 248 381 7.3E-58 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_13980 c9b2492c458e085a0715b90d90a76076 381 SUPERFAMILY SSF53383 15 380 2.11E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_09290 03f34d14c58c65ca2c47616290baa63a 236 PRINTS PR01399 Enterobactin synthetase component D signature 77 95 5.7E-9 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 BED32_09290 03f34d14c58c65ca2c47616290baa63a 236 PRINTS PR01399 Enterobactin synthetase component D signature 47 67 5.7E-9 T 11-10-2018 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 BED32_09290 03f34d14c58c65ca2c47616290baa63a 236 Gene3D G3DSA:3.90.470.20 119 226 4.5E-5 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_09290 03f34d14c58c65ca2c47616290baa63a 236 SUPERFAMILY SSF56214 120 204 7.32E-14 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_09290 03f34d14c58c65ca2c47616290baa63a 236 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 121 207 4.3E-11 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_05950 b184b35aab6d24a9c8b7dba5923e40e7 149 Pfam PF03477 ATP cone domain 50 136 7.6E-16 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 BED32_05950 b184b35aab6d24a9c8b7dba5923e40e7 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 6.5E-76 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BED32_05950 b184b35aab6d24a9c8b7dba5923e40e7 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 88.974 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 SUPERFAMILY SSF52402 5 245 8.6E-57 T 11-10-2018 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 Pfam PF03054 tRNA methyl transferase 7 361 1.7E-143 T 11-10-2018 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 Gene3D G3DSA:2.40.30.10 283 369 1.0E-34 T 11-10-2018 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 Gene3D G3DSA:2.30.30.280 214 282 1.7E-28 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 7 361 1.1E-156 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 7 362 40.889 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 BED32_12990 e651c371743fd7db3e52c35b9bc49c4f 373 Gene3D G3DSA:3.40.50.620 1 212 1.0E-96 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_20960 ae2c7ca4ab3b02ba1808c95968405e93 354 Gene3D G3DSA:3.40.50.2000 1 151 9.7E-59 T 11-10-2018 BED32_20960 ae2c7ca4ab3b02ba1808c95968405e93 354 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 341 1.2E-160 T 11-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 BED32_20960 ae2c7ca4ab3b02ba1808c95968405e93 354 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 324 3.0E-80 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 BED32_20960 ae2c7ca4ab3b02ba1808c95968405e93 354 SUPERFAMILY SSF53756 1 344 1.05E-99 T 11-10-2018 BED32_20960 ae2c7ca4ab3b02ba1808c95968405e93 354 Gene3D G3DSA:3.40.50.2000 163 347 2.5E-65 T 11-10-2018 BED32_21530 17fb202bb7b13b08fd2018f1081ed89a 215 Gene3D G3DSA:3.40.50.1000 2 188 1.4E-45 T 11-10-2018 IPR023214 HAD superfamily BED32_21530 17fb202bb7b13b08fd2018f1081ed89a 215 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 49 176 1.4E-13 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_21530 17fb202bb7b13b08fd2018f1081ed89a 215 SUPERFAMILY SSF56784 2 205 5.86E-45 T 11-10-2018 IPR036412 HAD-like superfamily BED32_21530 17fb202bb7b13b08fd2018f1081ed89a 215 Gene3D G3DSA:1.10.150.240 12 79 1.4E-45 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_21530 17fb202bb7b13b08fd2018f1081ed89a 215 Pfam PF13419 Haloacid dehalogenase-like hydrolase 1 175 6.0E-26 T 11-10-2018 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 SUPERFAMILY SSF51569 7 335 1.44E-143 T 11-10-2018 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 Gene3D G3DSA:3.20.20.70 3 337 2.3E-145 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 7.8E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 SMART SM01004 9 333 4.6E-239 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 PIRSF PIRSF001415 2 336 2.3E-152 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_19995 2c3c3e83e3548344241554b3c628d7a4 340 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 3.9E-139 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 Gene3D G3DSA:3.90.76.10 67 190 7.0E-189 T 11-10-2018 BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 83 104 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 PIRSF PIRSF002741 3 537 1.5E-110 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 SUPERFAMILY SSF53850 32 529 1.63E-140 T 11-10-2018 BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 77 454 4.0E-86 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 Gene3D G3DSA:3.40.190.10 41 519 7.0E-189 T 11-10-2018 BED32_11140 5bb434440b5526e3bed9c18934c1666b 538 Gene3D G3DSA:3.10.105.10 292 507 7.0E-189 T 11-10-2018 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 SMART SM00421 836 893 7.9E-20 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 869 881 2.7E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 839 853 2.7E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 853 869 2.7E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 Gene3D G3DSA:1.25.40.10 441 811 2.9E-95 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 Gene3D G3DSA:1.10.10.10 828 900 6.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01465 fb6215658daabd3c10dd086223ea68db 903 SUPERFAMILY SSF46894 829 895 7.14E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 ProSitePatterns PS00622 LuxR-type HTH domain signature. 853 880 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 Pfam PF00196 Bacterial regulatory proteins, luxR family 838 891 4.6E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_01465 fb6215658daabd3c10dd086223ea68db 903 Hamap MF_01247 HTH-type transcriptional regulator MalT [malT]. 1 902 36.912 T 11-10-2018 IPR023768 Transcriptional regulator HTH-type, MalT BED32_01465 fb6215658daabd3c10dd086223ea68db 903 SUPERFAMILY SSF52540 8 226 2.01E-6 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01465 fb6215658daabd3c10dd086223ea68db 903 SUPERFAMILY SSF48452 442 806 1.99E-157 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Pfam PF05127 Helicase 184 330 6.2E-39 T 11-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Pfam PF17176 tRNA-binding domain 533 651 1.9E-44 T 11-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Gene3D G3DSA:1.20.120.890 528 655 1.4E-47 T 11-10-2018 IPR038321 TmcA, C-terminal domain superfamily BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Pfam PF13718 GNAT acetyltransferase 2 364 471 1.2E-9 T 11-10-2018 IPR000182 GNAT domain BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Pfam PF13718 GNAT acetyltransferase 2 474 529 1.1E-6 T 11-10-2018 IPR000182 GNAT domain BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Gene3D G3DSA:3.40.50.11040 1 179 1.8E-62 T 11-10-2018 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Gene3D G3DSA:3.40.50.12320 180 320 3.5E-49 T 11-10-2018 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 SUPERFAMILY SSF52540 153 275 2.28E-11 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 5 648 50.581 T 11-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 SUPERFAMILY SSF55729 363 509 3.54E-9 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Pfam PF08351 Domain of unknown function (DUF1726) 53 138 3.8E-5 T 11-10-2018 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Reactome: R-HSA-6790901 BED32_15615 8b5ce6cd18f57993a1966dda92ba4449 657 Gene3D G3DSA:3.40.630.30 321 527 6.3E-69 T 11-10-2018 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 179 42.096 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 Gene3D G3DSA:1.10.1220.10 1 40 3.2E-24 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 SUPERFAMILY SSF47598 1 35 7.67E-14 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 PIRSF PIRSF019401 1 179 2.8E-46 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 SUPERFAMILY SSF82808 64 179 9.68E-48 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 Pfam PF17206 SeqA protein N-terminal domain 1 36 6.4E-24 T 11-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 Gene3D G3DSA:1.20.1380.10 66 179 3.8E-45 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 BED32_07615 a8e74ad94454193e4c573071145e8b7c 179 Pfam PF03925 SeqA protein C-terminal domain 69 177 1.7E-47 T 11-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 SUPERFAMILY SSF53697 95 277 1.69E-42 T 11-10-2018 BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 Gene3D G3DSA:1.10.10.10 1 79 1.2E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 Gene3D G3DSA:3.40.50.10490 95 277 1.4E-42 T 11-10-2018 BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 4.7E-30 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 Pfam PF01380 SIS domain 124 252 9.4E-25 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_10240 437f285194bfa7c1e4f05f85da3eced2 289 SUPERFAMILY SSF46689 1 80 4.48E-21 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 Pfam PF02814 UreE urease accessory protein, N-terminal domain 15 73 2.3E-16 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 Gene3D G3DSA:2.60.260.20 1 79 2.1E-12 T 11-10-2018 BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 SUPERFAMILY SSF69287 3 79 1.44E-18 T 11-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 SMART SM00988 11 75 5.0E-16 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 159 14.71 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 PIRSF PIRSF036402 2 222 1.2E-39 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 BED32_16475 9e173c2ed8d02457eb30c5810e3d643c 224 Pfam PF05194 UreE urease accessory protein, C-terminal domain 85 215 2.6E-9 T 11-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Pfam PF00970 Oxidoreductase FAD-binding domain 204 266 1.4E-8 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Gene3D G3DSA:3.40.50.80 275 393 2.6E-34 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Gene3D G3DSA:3.10.20.30 34 125 2.1E-27 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 1 407 62.399 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 PIRSF PIRSF000044 1 407 1.1E-217 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 41 114 5.6E-7 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 3 407 8.2E-234 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Pfam PF00175 Oxidoreductase NAD-binding domain 277 386 5.1E-19 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 Gene3D G3DSA:2.40.30.10 126 264 6.8E-50 T 11-10-2018 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 SUPERFAMILY SSF63380 105 272 3.57E-35 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 242 251 9.9E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 209 216 9.9E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 276 295 9.9E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 314 325 9.9E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 SUPERFAMILY SSF52343 255 402 1.96E-38 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_05685 da2d13ee40ecf7539842d467571d2c8a 407 SUPERFAMILY SSF54292 35 124 4.69E-19 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_19445 30e69c3bb705add09979ec99329a59b3 279 Gene3D G3DSA:3.40.50.1980 25 146 1.1E-41 T 11-10-2018 BED32_19445 30e69c3bb705add09979ec99329a59b3 279 Pfam PF01497 Periplasmic binding protein 29 253 2.4E-30 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_19445 30e69c3bb705add09979ec99329a59b3 279 SUPERFAMILY SSF53807 26 273 1.41E-49 T 11-10-2018 BED32_19445 30e69c3bb705add09979ec99329a59b3 279 Gene3D G3DSA:3.40.50.1980 147 279 3.6E-53 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 Pfam PF02541 Ppx/GppA phosphatase family 21 301 5.9E-97 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 SUPERFAMILY SSF53067 7 128 1.57E-38 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 494 54.092 T 11-10-2018 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 SUPERFAMILY SSF53067 132 300 1.65E-41 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 8 300 1.6E-93 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 Gene3D G3DSA:3.30.420.150 112 289 7.1E-88 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 Gene3D G3DSA:3.30.420.40 9 297 7.1E-88 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 Gene3D G3DSA:1.10.3210.10 305 497 1.3E-49 T 11-10-2018 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 PIRSF PIRSF001267 1 496 3.4E-181 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 BED32_20505 0e8c82e3c96f1ad8bc4c38054e38962e 497 SUPERFAMILY SSF109604 307 494 1.79E-44 T 11-10-2018 BED32_17280 42a20da087c6e7b1aa2b43b9290e2bb5 400 Pfam PF00872 Transposase, Mutator family 11 373 2.5E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_19160 9bc87f7c57465090d99a3f533986cf78 249 Gene3D G3DSA:3.40.50.1820 2 249 2.5E-57 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_19160 9bc87f7c57465090d99a3f533986cf78 249 SUPERFAMILY SSF53474 12 249 4.02E-39 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_19160 9bc87f7c57465090d99a3f533986cf78 249 Pfam PF00326 Prolyl oligopeptidase family 88 234 4.9E-14 T 11-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 SUPERFAMILY SSF52833 87 231 7.84E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 Pfam PF10411 Disulfide bond isomerase protein N-terminus 27 76 1.4E-15 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 Gene3D G3DSA:3.40.30.10 71 231 7.3E-51 T 11-10-2018 BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 Pfam PF13098 Thioredoxin-like domain 104 227 2.4E-30 T 11-10-2018 IPR012336 Thioredoxin-like fold BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 ProSitePatterns PS00194 Thioredoxin family active site. 111 129 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 SUPERFAMILY SSF54423 22 80 4.05E-18 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 BED32_17410 571579837a353f251f5ae8b59f9cfb53 238 Gene3D G3DSA:3.10.450.70 22 70 1.1E-24 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 TIGRFAM TIGR00761 argB: acetylglutamate kinase 5 234 5.3E-72 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 PIRSF PIRSF000728 1 258 1.5E-70 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 Pfam PF00696 Amino acid kinase family 5 235 1.2E-37 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 SUPERFAMILY SSF53633 3 256 1.96E-58 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 Hamap MF_00082 Acetylglutamate kinase [argB]. 2 251 43.537 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00620 1d85fac461ffe8732cbc2f9d0b0df9dd 258 Gene3D G3DSA:3.40.1160.10 2 257 2.6E-72 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 Pfam PF01687 Riboflavin kinase 184 306 4.8E-37 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 Pfam PF06574 FAD synthetase 12 167 4.4E-56 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 Gene3D G3DSA:3.40.50.620 1 185 2.6E-59 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 51 2.0E-7 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 SMART SM00904 183 307 9.0E-63 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 306 2.2E-112 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 SUPERFAMILY SSF82114 174 307 1.79E-43 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 SUPERFAMILY SSF52374 15 175 6.19E-36 T 11-10-2018 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 PIRSF PIRSF004491 1 310 4.5E-102 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 BED32_18150 3e6b34dbbdb79887d3c40e8f08f0fe75 312 Gene3D G3DSA:2.40.30.30 186 310 7.1E-38 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 5 268 1.3E-105 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 129 6.4E-42 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 Gene3D G3DSA:3.30.360.10 131 238 1.1E-103 T 11-10-2018 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 154 171 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 6 269 34.911 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 SUPERFAMILY SSF51735 4 271 1.46E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 PIRSF PIRSF000161 4 272 2.0E-89 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 SUPERFAMILY SSF55347 131 240 2.83E-37 T 11-10-2018 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 132 268 2.8E-42 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_18125 01a47ea48c13ae7aa7136e5b807dc0c2 273 Gene3D G3DSA:3.40.50.720 7 268 1.1E-103 T 11-10-2018 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Gene3D G3DSA:3.40.50.2030 380 548 9.5E-59 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 549 20.77 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 4.4E-247 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 SUPERFAMILY SSF56821 1 549 2.9E-188 T 11-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Gene3D G3DSA:1.20.1270.20 149 232 7.0E-28 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Pfam PF03063 Prismane/CO dehydrogenase family 1 544 1.4E-159 T 11-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Gene3D G3DSA:3.40.50.2030 234 379 7.9E-61 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 Gene3D G3DSA:1.20.1270.20 1 139 3.6E-35 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 BED32_13820 b32462b04896f5ae456f39a2fb5c06ed 550 PIRSF PIRSF000076 1 550 4.4E-241 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 BED32_12435 02161e3365f1397d2cff1291c64e5518 237 SMART SM00382 42 226 9.2E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_12435 02161e3365f1397d2cff1291c64e5518 237 Pfam PF00005 ABC transporter 33 178 6.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12435 02161e3365f1397d2cff1291c64e5518 237 SUPERFAMILY SSF52540 17 233 1.77E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12435 02161e3365f1397d2cff1291c64e5518 237 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_12435 02161e3365f1397d2cff1291c64e5518 237 Gene3D G3DSA:3.40.50.300 15 237 4.9E-68 T 11-10-2018 BED32_15055 dd02e3def7c8094630632f241c997e05 333 Pfam PF05125 Phage major capsid protein, P2 family 27 325 2.1E-84 T 11-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid BED32_03870 b26dd7a6188b494c7afb3d09dd4c3e74 91 Pfam PF04316 Anti-sigma-28 factor, FlgM 40 87 5.0E-7 T 11-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal BED32_03870 b26dd7a6188b494c7afb3d09dd4c3e74 91 SUPERFAMILY SSF101498 35 89 3.53E-8 T 11-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily BED32_03870 b26dd7a6188b494c7afb3d09dd4c3e74 91 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 14 90 5.6E-13 T 11-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BED32_04665 fc4409d344da5cfb6e263a663818e78c 174 Gene3D G3DSA:2.60.40.1090 41 174 8.8E-37 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_04665 fc4409d344da5cfb6e263a663818e78c 174 SUPERFAMILY SSF49401 29 174 2.29E-37 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_04665 fc4409d344da5cfb6e263a663818e78c 174 Pfam PF00419 Fimbrial protein 31 174 2.5E-15 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_13845 f6a055a23b5998bac2f6c399f95ae2af 485 SUPERFAMILY SSF51735 3 296 1.06E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_13845 f6a055a23b5998bac2f6c399f95ae2af 485 Gene3D G3DSA:3.40.50.720 5 300 6.9E-33 T 11-10-2018 BED32_13845 f6a055a23b5998bac2f6c399f95ae2af 485 Pfam PF13460 NAD(P)H-binding 10 122 5.6E-11 T 11-10-2018 IPR016040 NAD(P)-binding domain BED32_13845 f6a055a23b5998bac2f6c399f95ae2af 485 Pfam PF11066 Protein of unknown function (DUF2867) 335 464 7.9E-13 T 11-10-2018 IPR021295 Protein of unknown function DUF2867 BED32_08005 d00c8a1d0f8cd4bafb9a4b8c8f3fc0f1 82 Pfam PF09905 DNA-binding protein VF530 7 68 1.1E-35 T 11-10-2018 IPR018668 DNA-binding protein VF530-like GO:0003677 BED32_08005 d00c8a1d0f8cd4bafb9a4b8c8f3fc0f1 82 Gene3D G3DSA:1.10.720.30 14 73 2.5E-32 T 11-10-2018 IPR036361 SAP domain superfamily BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 PRINTS PR01401 Mutator MutT protein signature 77 90 2.4E-11 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 PRINTS PR01401 Mutator MutT protein signature 2 23 2.4E-11 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 126 4.9E-50 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.2E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.2E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 SUPERFAMILY SSF55811 2 126 1.62E-37 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 Gene3D G3DSA:3.90.79.10 1 127 2.7E-38 T 11-10-2018 BED32_17830 71261a55fe8a7a4974b350d85bdb806d 128 Pfam PF00293 NUDIX domain 6 124 1.4E-21 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 248 60.911 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 Gene3D G3DSA:3.20.20.70 1 255 2.3E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 SUPERFAMILY SSF51351 1 250 1.09E-90 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 Pfam PF00121 Triosephosphate isomerase 5 246 1.4E-92 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.3E-96 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_20845 5f73daac710bb5c2354cc64f9ae0e321 255 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 Gene3D G3DSA:3.90.180.10 1 170 1.1E-20 T 11-10-2018 BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 Gene3D G3DSA:3.40.50.720 171 300 9.8E-18 T 11-10-2018 BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 98 4.3E-6 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 SUPERFAMILY SSF51735 168 332 3.94E-19 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 SUPERFAMILY SSF50129 3 189 1.38E-27 T 11-10-2018 IPR011032 GroES-like superfamily BED32_04785 e5c0352484b9a1a0f14c9c09a36c05d1 416 Pfam PF00107 Zinc-binding dehydrogenase 187 327 1.7E-14 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_04310 3ec0797eaff10a09797f3dee6bc9b3e2 108 Pfam PF04320 Protein with unknown function (DUF469) 7 107 5.1E-43 T 11-10-2018 IPR007416 Protein of unknown function DUF469 BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 Pfam PF00005 ABC transporter 18 164 5.7E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 6.9E-126 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 SMART SM00382 27 214 1.7E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 Gene3D G3DSA:3.40.50.300 2 268 4.9E-81 T 11-10-2018 BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 SUPERFAMILY SSF52540 3 244 2.08E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15390 2cf0c0850d7cbc893cad6a1ee305d417 363 SUPERFAMILY SSF50331 239 326 2.44E-9 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 Gene3D G3DSA:3.40.50.1100 12 306 1.3E-125 T 11-10-2018 BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 2.5E-136 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 Gene3D G3DSA:3.40.50.1100 43 145 1.3E-125 T 11-10-2018 BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 1.1E-143 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 SUPERFAMILY SSF53686 3 316 6.42E-98 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BED32_15345 331de4fe810179bf6677b2eecbcdeafe 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 1.4E-69 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_21230 48dcfd75808b171077664d4741cdba08 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.661 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BED32_21230 48dcfd75808b171077664d4741cdba08 145 SUPERFAMILY SSF69500 1 144 2.35E-56 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BED32_21230 48dcfd75808b171077664d4741cdba08 145 Gene3D G3DSA:3.50.80.10 1 145 3.6E-56 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily BED32_21230 48dcfd75808b171077664d4741cdba08 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 143 4.3E-53 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BED32_21230 48dcfd75808b171077664d4741cdba08 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 6.3E-68 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 BED32_18775 d2e6fc640dd09541d46906c1697bde8a 255 Pfam PF12706 Beta-lactamase superfamily domain 50 226 1.1E-16 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_18775 d2e6fc640dd09541d46906c1697bde8a 255 TIGRFAM TIGR03307 PhnP: phosphonate metabolism protein PhnP 1 251 5.4E-118 T 11-10-2018 IPR017693 Phosphonate metabolism protein PhnP GO:0008081|GO:0019700 KEGG: 00440+3.1.4.55|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_18775 d2e6fc640dd09541d46906c1697bde8a 255 Gene3D G3DSA:3.60.15.10 1 254 4.7E-66 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_18775 d2e6fc640dd09541d46906c1697bde8a 255 SUPERFAMILY SSF56281 1 254 1.52E-38 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 PIRSF PIRSF001338 11 173 1.3E-65 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 Pfam PF00731 AIR carboxylase 14 162 9.7E-63 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 SUPERFAMILY SSF52255 14 170 3.14E-65 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 SMART SM01001 13 164 6.6E-100 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 15 168 31.867 T 11-10-2018 IPR033747 Class I PurE BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 Gene3D G3DSA:3.40.50.7700 1 174 5.3E-77 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 BED32_06450 d43ea8a7e7f2af0cc78e28255caad862 174 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 15 169 2.0E-64 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 Pfam PF01979 Amidohydrolase family 15 307 5.5E-18 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 Gene3D G3DSA:3.20.20.140 6 348 3.9E-105 T 11-10-2018 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 SUPERFAMILY SSF51556 6 347 4.16E-146 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 Hamap MF_00219 Dihydroorotase [pyrC]. 6 347 47.177 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 PIRSF PIRSF001237 4 348 5.9E-142 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 249 260 - T 11-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_13220 22504b18cd2f2c537f7edc3860ea623a 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 8 347 1.5E-151 T 11-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 720 740 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Pfam PF00171 Aldehyde dehydrogenase family 5 399 5.1E-28 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 SUPERFAMILY SSF56796 451 864 1.26E-118 T 11-10-2018 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 PIRSF PIRSF000111 1 866 0.0 T 11-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Gene3D G3DSA:3.40.309.10 218 404 1.6E-181 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Gene3D G3DSA:1.20.1090.10 645 865 3.5E-61 T 11-10-2018 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Gene3D G3DSA:3.40.605.10 10 444 1.6E-181 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Pfam PF00465 Iron-containing alcohol dehydrogenase 457 850 1.5E-113 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 SUPERFAMILY SSF53720 6 453 7.2E-84 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 Gene3D G3DSA:3.40.50.1970 450 643 3.6E-58 T 11-10-2018 BED32_12120 afe8c1ef811684391238058abeb0d83c 891 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 632 660 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 434 756 3.4E-159 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 10 318 3.8E-126 T 11-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 8 761 37.408 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 Gene3D G3DSA:3.20.20.210 12 527 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 Gene3D G3DSA:3.20.20.210 392 759 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 13 761 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 SUPERFAMILY SSF51726 399 761 1.31E-117 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 SUPERFAMILY SSF51726 10 397 6.93E-113 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_20065 018c7d0730fc8894d4422284f3d614ca 763 PIRSF PIRSF000382 7 763 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 BED32_01345 60b1b405f362f1ff3f357bf114e23f14 298 TIGRFAM TIGR04379 myo_inos_iolE: myo-inosose-2 dehydratase 6 295 1.6E-119 T 11-10-2018 IPR030823 IolE/MocC family KEGG: 00562+4.2.1.44 BED32_01345 60b1b405f362f1ff3f357bf114e23f14 298 Pfam PF01261 Xylose isomerase-like TIM barrel 50 250 4.6E-25 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BED32_01345 60b1b405f362f1ff3f357bf114e23f14 298 Gene3D G3DSA:3.20.20.150 1 295 5.4E-80 T 11-10-2018 BED32_01345 60b1b405f362f1ff3f357bf114e23f14 298 Hamap MF_01672 Inosose dehydratase [iolE]. 1 298 56.148 T 11-10-2018 IPR023952 Inosose dehydratase GO:0019310|GO:0030145|GO:0050114 KEGG: 00562+4.2.1.44 BED32_01345 60b1b405f362f1ff3f357bf114e23f14 298 SUPERFAMILY SSF51658 7 295 1.15E-56 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 Gene3D G3DSA:3.30.1370.30 2 72 9.8E-28 T 11-10-2018 BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.778 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 Pfam PF00410 Ribosomal protein S8 5 129 9.5E-49 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 SUPERFAMILY SSF56047 5 129 2.22E-46 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01945 b9a84029084e7abec8fd2ddd2f780de3 130 Gene3D G3DSA:3.30.1490.10 73 130 1.4E-25 T 11-10-2018 BED32_13960 fdbd6acfef695e01c4a98c615a534dee 455 SUPERFAMILY SSF143548 16 158 3.14E-44 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BED32_13960 fdbd6acfef695e01c4a98c615a534dee 455 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 2.7E-218 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BED32_13960 fdbd6acfef695e01c4a98c615a534dee 455 Gene3D G3DSA:3.30.1330.90 10 159 9.0E-49 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BED32_13960 fdbd6acfef695e01c4a98c615a534dee 455 Pfam PF03313 Serine dehydratase alpha chain 184 448 2.2E-94 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit BED32_13960 fdbd6acfef695e01c4a98c615a534dee 455 Pfam PF03315 Serine dehydratase beta chain 3 155 2.0E-53 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 Gene3D G3DSA:3.40.1690.10 200 342 1.9E-59 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 255 270 1.7E-30 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 211 228 1.7E-30 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 285 306 1.7E-30 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 191 209 1.7E-30 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 SUPERFAMILY SSF160544 227 334 1.22E-40 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 2 336 8.1E-127 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 BED32_09575 9f84a3e8a81df35ea7e7302ad715d1d9 366 Pfam PF01312 FlhB HrpN YscU SpaS Family 1 330 5.5E-119 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_12730 2dc057afdec05ffc63683a9642551928 693 Pfam PF08448 PAS fold 152 257 5.5E-14 T 11-10-2018 IPR013656 PAS fold-4 BED32_12730 2dc057afdec05ffc63683a9642551928 693 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 528 690 2.1E-43 T 11-10-2018 IPR000160 GGDEF domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SUPERFAMILY SSF55073 537 689 2.75E-45 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_12730 2dc057afdec05ffc63683a9642551928 693 SUPERFAMILY SSF55785 24 136 1.8E-22 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12730 2dc057afdec05ffc63683a9642551928 693 Pfam PF13426 PAS domain 279 382 4.3E-12 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 Pfam PF13426 PAS domain 24 126 3.2E-13 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00086 85 127 1.6 T 11-10-2018 IPR001610 PAC motif BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00086 483 521 75.0 T 11-10-2018 IPR001610 PAC motif BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00086 341 383 0.067 T 11-10-2018 IPR001610 PAC motif BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00086 213 255 0.07 T 11-10-2018 IPR001610 PAC motif BED32_12730 2dc057afdec05ffc63683a9642551928 693 Gene3D G3DSA:3.30.450.20 268 393 1.5E-25 T 11-10-2018 BED32_12730 2dc057afdec05ffc63683a9642551928 693 Gene3D G3DSA:3.30.450.20 142 267 2.8E-28 T 11-10-2018 BED32_12730 2dc057afdec05ffc63683a9642551928 693 Gene3D G3DSA:3.30.450.20 8 141 2.6E-26 T 11-10-2018 BED32_12730 2dc057afdec05ffc63683a9642551928 693 Gene3D G3DSA:3.30.70.270 521 692 2.0E-54 T 11-10-2018 BED32_12730 2dc057afdec05ffc63683a9642551928 693 Gene3D G3DSA:3.30.450.20 394 519 3.0E-22 T 11-10-2018 BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00091 11 80 1.5E-5 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00091 139 208 9.5E-4 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00091 402 468 1.1E-8 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00091 267 335 1.9E-6 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 Pfam PF00990 Diguanylate cyclase, GGDEF domain 532 688 1.1E-45 T 11-10-2018 IPR000160 GGDEF domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 133 1.5E-18 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 265 390 9.1E-17 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 135 262 1.6E-22 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 399 528 2.1E-14 T 11-10-2018 IPR000014 PAS domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 SUPERFAMILY SSF55785 381 519 1.61E-18 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12730 2dc057afdec05ffc63683a9642551928 693 SMART SM00267 521 692 1.4E-55 T 11-10-2018 IPR000160 GGDEF domain BED32_12730 2dc057afdec05ffc63683a9642551928 693 Pfam PF00989 PAS fold 402 518 5.7E-14 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_12730 2dc057afdec05ffc63683a9642551928 693 SUPERFAMILY SSF55785 251 378 1.08E-28 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12730 2dc057afdec05ffc63683a9642551928 693 SUPERFAMILY SSF55785 152 263 7.63E-25 T 11-10-2018 IPR035965 PAS domain superfamily BED32_13120 afdb9f1af7128f731e35730a3654b356 711 SMART SM00382 514 699 2.5E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Pfam PF00664 ABC transporter transmembrane region 174 435 1.4E-25 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Gene3D G3DSA:3.90.70.10 7 153 1.0E-40 T 11-10-2018 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Gene3D G3DSA:3.40.50.300 476 711 2.3E-70 T 11-10-2018 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Pfam PF00005 ABC transporter 506 654 1.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Gene3D G3DSA:1.20.1560.10 156 471 1.1E-47 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 SUPERFAMILY SSF52540 482 698 2.62E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13120 afdb9f1af7128f731e35730a3654b356 711 ProSitePatterns PS00211 ABC transporters family signature. 626 640 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 Pfam PF03412 Peptidase C39 family 16 144 6.8E-37 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BED32_13120 afdb9f1af7128f731e35730a3654b356 711 SUPERFAMILY SSF90123 166 639 2.49E-46 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_10565 487b5dca4eae9c943085331e24769202 331 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 17 321 6.3E-118 T 11-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BED32_10565 487b5dca4eae9c943085331e24769202 331 Gene3D G3DSA:1.20.5.170 1 50 7.6E-20 T 11-10-2018 BED32_10565 487b5dca4eae9c943085331e24769202 331 Pfam PF03308 ArgK protein 22 291 2.8E-109 T 11-10-2018 BED32_10565 487b5dca4eae9c943085331e24769202 331 SUPERFAMILY SSF52540 6 316 1.14E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10565 487b5dca4eae9c943085331e24769202 331 Gene3D G3DSA:1.10.287.130 263 331 5.8E-10 T 11-10-2018 BED32_10565 487b5dca4eae9c943085331e24769202 331 Gene3D G3DSA:3.40.50.300 51 262 4.3E-79 T 11-10-2018 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 364 383 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 PIRSF PIRSF000774 1 477 5.7E-148 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 Pfam PF04552 Sigma-54, DNA binding domain 317 475 3.2E-69 T 11-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding BED32_02925 a4d8e9023c14402c38297789c4c86969 477 PRINTS PR00045 Sigma-54 factor signature 186 203 7.3E-32 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 PRINTS PR00045 Sigma-54 factor signature 376 388 7.3E-32 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 PRINTS PR00045 Sigma-54 factor signature 450 468 7.3E-32 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 PRINTS PR00045 Sigma-54 factor signature 392 403 7.3E-32 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 474 8.5E-158 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 4.0E-15 T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 Gene3D G3DSA:1.10.10.1330 116 252 6.7E-25 T 11-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily BED32_02925 a4d8e9023c14402c38297789c4c86969 477 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 455 462 - T 11-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 Pfam PF04963 Sigma-54 factor, core binding domain 114 303 1.1E-60 T 11-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 BED32_02925 a4d8e9023c14402c38297789c4c86969 477 Gene3D G3DSA:1.10.10.60 417 474 1.9E-22 T 11-10-2018 BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 11-10-2018 IPR019808 Histidine triad, conserved site BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 Pfam PF01230 HIT domain 12 109 4.0E-30 T 11-10-2018 IPR001310 Histidine triad (HIT) protein BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 SUPERFAMILY SSF54197 2 111 1.08E-35 T 11-10-2018 IPR036265 HIT-like superfamily BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 Gene3D G3DSA:3.30.428.10 1 117 2.7E-36 T 11-10-2018 IPR036265 HIT-like superfamily BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 PRINTS PR00332 Histidine triad family signature 95 105 3.9E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 PRINTS PR00332 Histidine triad family signature 6 22 3.9E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein BED32_13095 f4ccfeb13a8439104175a2d083b2f16c 117 PRINTS PR00332 Histidine triad family signature 27 45 3.9E-19 T 11-10-2018 IPR001310 Histidine triad (HIT) protein BED32_16040 11bca8c778b5bd9ae64fefd0eb82c974 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 5.1E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 BED32_16040 11bca8c778b5bd9ae64fefd0eb82c974 66 SUPERFAMILY SSF140319 3 64 2.09E-26 T 11-10-2018 IPR036762 IscX-like superfamily BED32_16040 11bca8c778b5bd9ae64fefd0eb82c974 66 PIRSF PIRSF039003 3 66 8.4E-32 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 BED32_16040 11bca8c778b5bd9ae64fefd0eb82c974 66 Pfam PF04384 Iron-sulphur cluster assembly 3 66 2.4E-31 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 BED32_16040 11bca8c778b5bd9ae64fefd0eb82c974 66 Gene3D G3DSA:1.10.10.600 1 66 1.3E-30 T 11-10-2018 IPR036762 IscX-like superfamily BED32_01135 3f439374c9f66db5157df771cfabed53 234 Pfam PF04445 Putative SAM-dependent methyltransferase 4 231 4.5E-108 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 BED32_01135 3f439374c9f66db5157df771cfabed53 234 Gene3D G3DSA:3.40.50.150 42 233 1.0E-73 T 11-10-2018 BED32_01135 3f439374c9f66db5157df771cfabed53 234 SUPERFAMILY SSF53335 3 232 1.18E-73 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_01135 3f439374c9f66db5157df771cfabed53 234 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 1 233 36.807 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 BED32_01135 3f439374c9f66db5157df771cfabed53 234 Gene3D G3DSA:3.40.1630.10 1 41 2.7E-22 T 11-10-2018 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Gene3D G3DSA:2.60.40.2070 761 859 1.5E-15 T 11-10-2018 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Pfam PF13953 PapC C-terminal domain 764 839 6.2E-17 T 11-10-2018 IPR025949 PapC-like, C-terminal domain BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 SUPERFAMILY SSF141729 17 134 8.76E-29 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Pfam PF00577 Outer membrane usher protein 178 755 2.4E-137 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Pfam PF13954 PapC N-terminal domain 20 159 8.9E-35 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Gene3D G3DSA:2.60.40.2610 670 760 5.7E-29 T 11-10-2018 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Gene3D G3DSA:3.10.20.410 17 136 2.4E-26 T 11-10-2018 BED32_09340 aeb4f61ffd470283f0f3010fdcdd0f98 860 Gene3D G3DSA:2.60.40.3110 248 337 1.8E-35 T 11-10-2018 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 17 238 4.8E-80 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 Gene3D G3DSA:3.20.20.70 7 265 2.5E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 SUPERFAMILY SSF51569 13 252 1.57E-79 T 11-10-2018 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 PIRSF PIRSF001357 11 261 4.5E-78 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 SMART SM01133 16 252 6.7E-77 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 Pfam PF01791 DeoC/LacD family aldolase 18 246 4.8E-46 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18350 4f5d76c9af0b76ac6b02eabd80486956 265 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 7 265 52.19 T 11-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 BED32_21935 4165662ae87b55d12c1bacb404a38479 287 SUPERFAMILY SSF52833 156 248 2.43E-11 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_21935 4165662ae87b55d12c1bacb404a38479 287 Pfam PF13728 F plasmid transfer operon protein 48 255 7.9E-43 T 11-10-2018 IPR039555 F plasmid transfer operon protein BED32_21935 4165662ae87b55d12c1bacb404a38479 287 Gene3D G3DSA:3.40.30.10 156 255 1.0E-9 T 11-10-2018 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Pfam PF00128 Alpha amylase, catalytic domain 30 372 5.7E-124 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 7 550 6.2E-251 T 11-10-2018 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 SMART SM00642 15 414 3.8E-154 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Gene3D G3DSA:2.60.40.1180 476 551 1.8E-15 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Gene3D G3DSA:3.20.20.80 1 108 2.4E-49 T 11-10-2018 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Pfam PF11941 Domain of unknown function (DUF3459) 459 542 2.0E-6 T 11-10-2018 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 SUPERFAMILY SSF51011 475 551 5.54E-17 T 11-10-2018 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 SUPERFAMILY SSF51445 5 472 4.01E-153 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Gene3D G3DSA:3.90.400.10 109 171 1.8E-27 T 11-10-2018 BED32_02865 9a0c4c9a35f095cef98a4bb4561dd080 553 Gene3D G3DSA:3.20.20.80 172 475 2.2E-108 T 11-10-2018 BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 SUPERFAMILY SSF52317 254 459 3.36E-33 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 SUPERFAMILY SSF52540 1 228 1.62E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 Pfam PF13500 AAA domain 4 227 3.1E-22 T 11-10-2018 BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 Gene3D G3DSA:3.40.50.880 253 425 2.0E-19 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 253 450 1.4E-56 T 11-10-2018 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 Gene3D G3DSA:3.40.50.300 4 252 7.7E-56 T 11-10-2018 BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 506 186.646 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 BED32_09030 0aae1cc596cf1f194261bdf119111e59 512 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 5 498 1.4E-160 T 11-10-2018 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 PIRSF PIRSF029745 20 565 1.7E-157 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 216 529 2.1E-110 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 Gene3D G3DSA:2.40.160.50 189 565 9.1E-103 T 11-10-2018 BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 Pfam PF17287 POTRA domain 157 211 1.5E-19 T 11-10-2018 IPR035251 ShlB, POTRA domain BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 Gene3D G3DSA:3.10.20.310 96 159 1.6E-6 T 11-10-2018 BED32_21970 5f234d076da6a440e0f73971f8c8d543 565 Pfam PF08479 POTRA domain, ShlB-type 80 156 8.3E-23 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type BED32_14700 96b8a017e26b2e690c5b89fadef34ec8 230 SMART SM00052 1 223 9.1E-6 T 11-10-2018 IPR001633 EAL domain BED32_14700 96b8a017e26b2e690c5b89fadef34ec8 230 Pfam PF00563 EAL domain 8 217 4.1E-17 T 11-10-2018 IPR001633 EAL domain BED32_14700 96b8a017e26b2e690c5b89fadef34ec8 230 Gene3D G3DSA:3.20.20.450 1 227 5.6E-43 T 11-10-2018 IPR035919 EAL domain superfamily BED32_14700 96b8a017e26b2e690c5b89fadef34ec8 230 SUPERFAMILY SSF141868 9 218 5.49E-22 T 11-10-2018 IPR035919 EAL domain superfamily BED32_03865 654c158b30a62be1e2fc90043145bfa6 155 Gene3D G3DSA:1.20.58.300 13 142 4.8E-17 T 11-10-2018 BED32_03865 654c158b30a62be1e2fc90043145bfa6 155 SUPERFAMILY SSF140566 15 140 3.53E-23 T 11-10-2018 IPR036679 FlgN-like superfamily GO:0005515|GO:0044780 BED32_03865 654c158b30a62be1e2fc90043145bfa6 155 Pfam PF05130 FlgN protein 16 140 1.6E-15 T 11-10-2018 IPR007809 FlgN-like protein GO:0005515|GO:0044780 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 350 357 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 SUPERFAMILY SSF52949 1 184 8.24E-52 T 11-10-2018 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 489 3.1E-122 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 2.0E-33 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 Gene3D G3DSA:3.40.630.10 181 498 5.6E-141 T 11-10-2018 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 SUPERFAMILY SSF53187 180 496 1.54E-124 T 11-10-2018 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 PRINTS PR00481 Cytosol aminopeptidase signature 324 345 3.3E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 PRINTS PR00481 Cytosol aminopeptidase signature 374 389 3.3E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 PRINTS PR00481 Cytosol aminopeptidase signature 346 366 3.3E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 PRINTS PR00481 Cytosol aminopeptidase signature 287 308 3.3E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 PRINTS PR00481 Cytosol aminopeptidase signature 265 282 3.3E-54 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 498 41.193 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 BED32_18645 af2677d937b0c703d0cd2f73cd57c34e 503 Gene3D G3DSA:3.40.220.10 1 159 3.3E-59 T 11-10-2018 BED32_21035 18902de3cba506ea8ccccc955be99af1 422 Gene3D G3DSA:1.10.443.10 214 399 3.7E-22 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_21035 18902de3cba506ea8ccccc955be99af1 422 Pfam PF00589 Phage integrase family 214 384 1.7E-17 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_21035 18902de3cba506ea8ccccc955be99af1 422 Pfam PF13356 Arm DNA-binding domain 4 90 4.5E-12 T 11-10-2018 IPR025166 Integrase, DNA-binding domain BED32_21035 18902de3cba506ea8ccccc955be99af1 422 Gene3D G3DSA:1.10.150.130 105 213 6.3E-41 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_21035 18902de3cba506ea8ccccc955be99af1 422 Gene3D G3DSA:3.30.160.390 2 104 1.9E-18 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily BED32_21035 18902de3cba506ea8ccccc955be99af1 422 SUPERFAMILY SSF56349 107 393 1.77E-55 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_04375 6b959f7ba841ef572786dd565b2b08c9 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 3.1E-49 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 BED32_04375 6b959f7ba841ef572786dd565b2b08c9 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.203 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 BED32_04375 6b959f7ba841ef572786dd565b2b08c9 187 SUPERFAMILY SSF143456 1 187 2.22E-66 T 11-10-2018 BED32_04375 6b959f7ba841ef572786dd565b2b08c9 187 Gene3D G3DSA:3.40.1740.10 1 187 1.9E-64 T 11-10-2018 BED32_19500 56407c18548cbd90efb11719c31f3457 923 Pfam PF07715 TonB-dependent Receptor Plug Domain 139 257 2.4E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_19500 56407c18548cbd90efb11719c31f3457 923 Gene3D G3DSA:2.40.170.20 304 922 1.1E-10 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_19500 56407c18548cbd90efb11719c31f3457 923 Gene3D G3DSA:2.170.130.10 135 265 3.1E-6 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_19500 56407c18548cbd90efb11719c31f3457 923 Pfam PF07660 Secretin and TonB N terminus short domain 56 104 1.7E-8 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BED32_19500 56407c18548cbd90efb11719c31f3457 923 SUPERFAMILY SSF56935 113 922 5.95E-52 T 11-10-2018 BED32_19500 56407c18548cbd90efb11719c31f3457 923 SMART SM00965 55 105 1.2E-11 T 11-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 BED32_19500 56407c18548cbd90efb11719c31f3457 923 Gene3D G3DSA:3.55.50.30 25 130 1.3E-22 T 11-10-2018 BED32_15115 15dae793322c153b6a5d13a1a945a01e 169 SUPERFAMILY SSF53474 2 105 3.03E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_15115 15dae793322c153b6a5d13a1a945a01e 169 Pfam PF07859 alpha/beta hydrolase fold 4 101 3.8E-18 T 11-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 BED32_15115 15dae793322c153b6a5d13a1a945a01e 169 Gene3D G3DSA:3.40.50.1820 1 137 1.9E-37 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SMART SM00881 9 104 1.4E-23 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SUPERFAMILY SSF52210 125 286 1.14E-36 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Pfam PF00583 Acetyltransferase (GNAT) family 761 863 3.7E-11 T 11-10-2018 IPR000182 GNAT domain BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.30.470.20 479 690 5.1E-56 T 11-10-2018 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.40.630.30 716 880 1.7E-40 T 11-10-2018 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.30.1490.20 499 576 5.1E-56 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SUPERFAMILY SSF56059 481 692 2.29E-25 T 11-10-2018 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SUPERFAMILY SSF52210 287 447 9.16E-39 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.40.50.720 2 130 8.0E-31 T 11-10-2018 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.40.50.261 285 455 1.2E-44 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Gene3D G3DSA:3.40.50.261 131 283 2.7E-47 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Pfam PF13380 CoA binding domain 13 129 2.4E-21 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SUPERFAMILY SSF55729 617 866 1.7E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 SUPERFAMILY SSF51735 2 136 7.38E-32 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Pfam PF13549 ATP-grasp domain 472 694 4.3E-73 T 11-10-2018 BED32_05110 8a5bdf63a31475025ed8412a3e15706c 880 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 147 280 7.1E-45 T 11-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain BED32_15395 7fd412c464a5777163993c70c45b6068 291 SUPERFAMILY SSF161098 16 268 5.23E-53 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15395 7fd412c464a5777163993c70c45b6068 291 Gene3D G3DSA:1.10.3720.10 20 276 7.6E-59 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15395 7fd412c464a5777163993c70c45b6068 291 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 19 276 1.1E-113 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 BED32_15395 7fd412c464a5777163993c70c45b6068 291 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 267 2.1E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_15395 7fd412c464a5777163993c70c45b6068 291 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 15 275 1.7E-106 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BED32_07700 42c9bcd7b729a5c49bca72dff4859c45 247 Gene3D G3DSA:3.40.1390.30 97 218 8.5E-85 T 11-10-2018 BED32_07700 42c9bcd7b729a5c49bca72dff4859c45 247 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 233 1.1E-55 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 BED32_07700 42c9bcd7b729a5c49bca72dff4859c45 247 Gene3D G3DSA:3.40.1390.30 14 232 8.5E-85 T 11-10-2018 BED32_07700 42c9bcd7b729a5c49bca72dff4859c45 247 SUPERFAMILY SSF102705 1 246 5.23E-82 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily BED32_07700 42c9bcd7b729a5c49bca72dff4859c45 247 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 246 1.3E-70 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 Gene3D G3DSA:3.40.50.300 6 274 7.2E-60 T 11-10-2018 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 SMART SM00382 26 223 3.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 SMART SM00382 337 506 4.7E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 SUPERFAMILY SSF52540 2 255 2.62E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 SUPERFAMILY SSF52540 294 518 1.02E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 Pfam PF12848 ABC transporter 217 297 1.2E-28 T 11-10-2018 IPR032781 ABC-transporter extension domain BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 Pfam PF00005 ABC transporter 328 459 2.7E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 Pfam PF00005 ABC transporter 17 178 4.7E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 Gene3D G3DSA:3.40.50.300 276 545 2.4E-57 T 11-10-2018 BED32_01785 2ff8b7940f35573c5cec9bfb9c6f015f 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Pfam PF00633 Helix-hairpin-helix motif 100 127 3.5E-7 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Gene3D G3DSA:1.10.340.30 21 132 4.5E-77 T 11-10-2018 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Gene3D G3DSA:1.10.1670.10 11 203 4.5E-77 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 36.796 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 1.1E-19 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 TIGRFAM TIGR01083 nth: endonuclease III 4 194 5.2E-87 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 SMART SM00478 38 185 2.1E-53 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 SUPERFAMILY SSF48150 2 207 5.02E-72 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 PIRSF PIRSF001435 1 211 3.0E-50 T 11-10-2018 BED32_11575 23c5e8919b5f8c7d4264217ae7eaf628 213 SMART SM00525 186 206 4.4E-5 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 BED32_16135 b1b4eb398938936d93a39ed7582be6cc 295 PIRSF PIRSF016839 1 295 5.5E-122 T 11-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 BED32_16135 b1b4eb398938936d93a39ed7582be6cc 295 Pfam PF02126 Phosphotriesterase family 4 290 2.7E-106 T 11-10-2018 IPR001559 Phosphotriesterase GO:0008270|GO:0009056 BED32_16135 b1b4eb398938936d93a39ed7582be6cc 295 SUPERFAMILY SSF51556 6 290 1.97E-92 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_16135 b1b4eb398938936d93a39ed7582be6cc 295 Gene3D G3DSA:3.20.20.140 4 291 2.6E-100 T 11-10-2018 BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 SMART SM00382 32 231 2.5E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 SUPERFAMILY SSF52540 3 253 1.74E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 8.2E-19 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 315 1.0E-25 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 Pfam PF00005 ABC transporter 24 181 3.6E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_00995 a4c8253cfabf44cf8b80a95252595041 326 Gene3D G3DSA:3.40.50.300 1 321 3.1E-93 T 11-10-2018 BED32_12240 f5665e72008cdbcf3c5d0601573b34dc 137 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 3 129 36.29 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BED32_12240 f5665e72008cdbcf3c5d0601573b34dc 137 Pfam PF01641 SelR domain 12 127 1.8E-51 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BED32_12240 f5665e72008cdbcf3c5d0601573b34dc 137 Gene3D G3DSA:2.170.150.20 4 136 1.7E-58 T 11-10-2018 BED32_12240 f5665e72008cdbcf3c5d0601573b34dc 137 SUPERFAMILY SSF51316 6 132 2.72E-56 T 11-10-2018 IPR011057 Mss4-like superfamily BED32_12240 f5665e72008cdbcf3c5d0601573b34dc 137 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 135 3.6E-58 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 BED32_00020 2b3ee6aef45e044d54897a7108c20bb3 76 Pfam PF00872 Transposase, Mutator family 16 61 1.2E-9 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_15710 a04f98679d14f5a03e6fa51e6c1aed17 554 Gene3D G3DSA:1.10.3720.10 296 549 2.7E-31 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15710 a04f98679d14f5a03e6fa51e6c1aed17 554 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 286 546 2.2E-75 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 BED32_15710 a04f98679d14f5a03e6fa51e6c1aed17 554 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 322 549 1.5E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_15710 a04f98679d14f5a03e6fa51e6c1aed17 554 SUPERFAMILY SSF161098 276 537 1.83E-38 T 11-10-2018 IPR035906 MetI-like superfamily BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 Gene3D G3DSA:1.10.260.40 3 59 9.1E-20 T 11-10-2018 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 Pfam PF13377 Periplasmic binding protein-like domain 159 316 8.1E-22 T 11-10-2018 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 SUPERFAMILY SSF47413 1 59 2.49E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 SUPERFAMILY SSF53822 61 317 1.05E-30 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 SMART SM00354 1 71 1.1E-24 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 Gene3D G3DSA:3.40.50.2300 62 294 1.1E-29 T 11-10-2018 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.1E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_00890 542bbb6fdf949d0238ad880bf74f78dc 320 Gene3D G3DSA:3.40.50.2300 149 275 1.1E-29 T 11-10-2018 BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 SUPERFAMILY SSF51998 7 809 1.95E-223 T 11-10-2018 BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 ProSitePatterns PS00850 Glycine radical domain signature. 781 789 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 TIGRFAM TIGR01774 PFL2-3: glycyl radical enzyme, PFL2/glycerol dehydratase family 8 810 0.0 T 11-10-2018 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 Pfam PF01228 Glycine radical 688 791 2.1E-28 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 Pfam PF02901 Pyruvate formate lyase-like 10 671 5.1E-210 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 BED32_17995 ce7ba3444fd6dcce1c4e35ae45e668eb 810 Gene3D G3DSA:3.20.70.20 10 810 1.9E-273 T 11-10-2018 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 Pfam PF00005 ABC transporter 15 184 3.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 Pfam PF00005 ABC transporter 333 466 1.2E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 Pfam PF12848 ABC transporter 223 299 1.4E-11 T 11-10-2018 IPR032781 ABC-transporter extension domain BED32_18295 586c173c07d82b32d32a905617fa26e2 548 Gene3D G3DSA:3.40.50.300 1 278 1.9E-86 T 11-10-2018 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 SUPERFAMILY SSF52540 296 521 2.71E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18295 586c173c07d82b32d32a905617fa26e2 548 SUPERFAMILY SSF52540 7 236 6.03E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18295 586c173c07d82b32d32a905617fa26e2 548 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 1 546 9.9E-290 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18295 586c173c07d82b32d32a905617fa26e2 548 SMART SM00382 341 515 7.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18295 586c173c07d82b32d32a905617fa26e2 548 SMART SM00382 24 229 1.2E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18295 586c173c07d82b32d32a905617fa26e2 548 Gene3D G3DSA:3.40.50.300 279 548 1.7E-76 T 11-10-2018 BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 SUPERFAMILY SSF52540 3 189 1.64E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 Gene3D G3DSA:3.30.63.10 37 96 1.0E-74 T 11-10-2018 BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.47 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 Pfam PF00625 Guanylate kinase 5 186 1.4E-67 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 Gene3D G3DSA:3.40.50.300 8 183 1.0E-74 T 11-10-2018 BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 SMART SM00072 3 187 4.7E-81 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit BED32_21170 f1a6fb4d924a15ad5f5a4663f5f9be65 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 3.6E-75 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 BED32_19420 2b16f6aa4d2302734205b86d4b66569a 181 SUPERFAMILY SSF144064 11 165 7.19E-49 T 11-10-2018 BED32_19420 2b16f6aa4d2302734205b86d4b66569a 181 Gene3D G3DSA:3.40.1570.10 10 178 3.6E-57 T 11-10-2018 BED32_19420 2b16f6aa4d2302734205b86d4b66569a 181 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 12 162 7.9E-62 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like BED32_19420 2b16f6aa4d2302734205b86d4b66569a 181 PIRSF PIRSF030840 1 168 4.0E-83 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like BED32_19420 2b16f6aa4d2302734205b86d4b66569a 181 Pfam PF06228 Haem utilisation ChuX/HutX 28 162 9.0E-32 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like BED32_08930 093d496de696da38995e6631b1a315e2 275 SMART SM00877 190 267 1.4E-14 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08930 093d496de696da38995e6631b1a315e2 275 SMART SM00877 84 166 2.3E-12 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08930 093d496de696da38995e6631b1a315e2 275 SUPERFAMILY SSF143414 191 262 2.49E-11 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08930 093d496de696da38995e6631b1a315e2 275 PIRSF PIRSF012290 43 275 2.1E-106 T 11-10-2018 IPR009193 Polyhedral organelle shell protein, EutL/PduB type GO:0031469 BED32_08930 093d496de696da38995e6631b1a315e2 275 SUPERFAMILY SSF143414 84 163 4.58E-10 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08930 093d496de696da38995e6631b1a315e2 275 Pfam PF00936 BMC domain 191 261 8.2E-14 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08930 093d496de696da38995e6631b1a315e2 275 Pfam PF00936 BMC domain 85 159 2.8E-13 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08930 093d496de696da38995e6631b1a315e2 275 Gene3D G3DSA:3.30.70.1810 65 157 8.0E-44 T 11-10-2018 BED32_08930 093d496de696da38995e6631b1a315e2 275 Gene3D G3DSA:3.30.70.1810 158 249 8.0E-44 T 11-10-2018 BED32_08930 093d496de696da38995e6631b1a315e2 275 TIGRFAM TIGR04501 microcomp_PduB: microcompartment protein PduB 51 275 7.9E-121 T 11-10-2018 IPR030984 Microcompartment protein PduB GO:0005198 BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 Gene3D G3DSA:3.30.70.1710 80 185 2.2E-36 T 11-10-2018 BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 Pfam PF00936 BMC domain 96 173 1.6E-21 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 Pfam PF00936 BMC domain 4 76 3.1E-19 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 SMART SM00877 95 173 9.2E-28 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 SMART SM00877 3 77 8.6E-21 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 Gene3D G3DSA:3.30.70.1710 1 79 2.5E-27 T 11-10-2018 BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 SUPERFAMILY SSF143414 3 92 1.44E-22 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 PIRSF PIRSF034834 1 183 7.7E-74 T 11-10-2018 IPR011238 Polyhedral organelle shell protein PduT BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 66 6.0E-22 T 11-10-2018 BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 95 158 8.0E-22 T 11-10-2018 BED32_08855 aab55a8201a50483caa6dde0b89a3497 185 SUPERFAMILY SSF143414 95 181 1.44E-23 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_03735 279f765cafd51408907fd69493033f5f 109 Pfam PF00665 Integrase core domain 55 107 1.1E-9 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_03735 279f765cafd51408907fd69493033f5f 109 Gene3D G3DSA:3.30.420.10 45 109 3.1E-5 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_03735 279f765cafd51408907fd69493033f5f 109 SUPERFAMILY SSF53098 47 107 7.4E-12 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00440 168c8efd2f5731caadd41c317432840c 704 Gene3D G3DSA:1.10.490.80 604 702 2.2E-33 T 11-10-2018 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PIRSF PIRSF005419 4 704 1.4E-262 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 Gene3D G3DSA:1.10.8.540 514 602 7.1E-32 T 11-10-2018 BED32_00440 168c8efd2f5731caadd41c317432840c 704 Pfam PF00771 FHIPEP family 27 694 4.4E-237 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 15 702 0.0 T 11-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 BED32_00440 168c8efd2f5731caadd41c317432840c 704 Gene3D G3DSA:3.40.30.60 368 513 1.4E-40 T 11-10-2018 BED32_00440 168c8efd2f5731caadd41c317432840c 704 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 138 161 - T 11-10-2018 IPR025505 FHIPEP conserved site BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 233 247 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 133 149 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 182 199 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_00440 168c8efd2f5731caadd41c317432840c 704 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 152 170 3.9E-58 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_01740 80b4215fa0dd3dcaa49feb5e8bd5de0c 326 Pfam PF00561 alpha/beta hydrolase fold 60 299 2.0E-19 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_01740 80b4215fa0dd3dcaa49feb5e8bd5de0c 326 Gene3D G3DSA:3.40.50.1820 44 326 3.3E-26 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_01740 80b4215fa0dd3dcaa49feb5e8bd5de0c 326 ProSitePatterns PS01133 Uncharacterized protein family UPF0017 signature. 226 267 - T 11-10-2018 IPR000952 AB hydrolase 4, conserved site BED32_01740 80b4215fa0dd3dcaa49feb5e8bd5de0c 326 SUPERFAMILY SSF53474 26 306 5.78E-42 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_01740 80b4215fa0dd3dcaa49feb5e8bd5de0c 326 PIRSF PIRSF005211 1 326 1.4E-102 T 11-10-2018 IPR012020 AB hydrolase 4 family BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 3.1E-27 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SMART SM00316 4 72 4.3E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Gene3D G3DSA:2.40.50.140 1 72 9.2E-36 T 11-10-2018 BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 SUPERFAMILY SSF50249 1 70 1.18E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.3E-38 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BED32_13775 25ddc8d907d8c6cdf9a50a3e27ba432a 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.17 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 Gene3D G3DSA:1.10.10.60 58 122 3.3E-21 T 11-10-2018 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 SUPERFAMILY SSF46689 9 57 5.08E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 Gene3D G3DSA:3.20.80.10 125 288 1.2E-17 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 SUPERFAMILY SSF46689 61 108 1.0E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 SUPERFAMILY SSF55136 127 270 1.52E-13 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 SMART SM00342 23 106 6.2E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 90 106 8.7E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 75 90 8.7E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 Gene3D G3DSA:1.10.10.60 7 57 1.3E-20 T 11-10-2018 BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 Pfam PF06445 GyrI-like small molecule binding domain 129 278 3.0E-14 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain BED32_11555 e03e9858ed755c586756dfcd69ce35b4 303 Pfam PF12833 Helix-turn-helix domain 30 107 2.1E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 Gene3D G3DSA:2.60.300.12 9 114 3.4E-34 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 SUPERFAMILY SSF89360 8 103 5.89E-31 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 4.9E-39 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 95 112 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 114 36.592 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 BED32_17585 af0a21c3922d03c67e3bc39835af8318 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 9 109 1.9E-20 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BED32_06080 25355f118c95a57376c25b5f560ae896 207 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 14 205 3.0E-109 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.209 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 11-10-2018 IPR033135 ClpP, histidine active site BED32_06080 25355f118c95a57376c25b5f560ae896 207 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 11-10-2018 IPR018215 ClpP, Ser active site BED32_06080 25355f118c95a57376c25b5f560ae896 207 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 7.1E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 7.1E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 7.1E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 7.1E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 7.1E-53 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 BED32_06080 25355f118c95a57376c25b5f560ae896 207 Pfam PF00574 Clp protease 25 205 4.1E-90 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA BED32_06080 25355f118c95a57376c25b5f560ae896 207 Gene3D G3DSA:3.90.226.10 6 207 1.5E-85 T 11-10-2018 BED32_06080 25355f118c95a57376c25b5f560ae896 207 SUPERFAMILY SSF52096 23 206 3.11E-75 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_12040 1a9bad6393ebaa72d0ce274188f6ea44 575 SUPERFAMILY SSF52091 444 537 3.34E-11 T 11-10-2018 IPR036513 STAS domain superfamily BED32_12040 1a9bad6393ebaa72d0ce274188f6ea44 575 Gene3D G3DSA:3.30.750.24 436 563 3.2E-20 T 11-10-2018 IPR036513 STAS domain superfamily BED32_12040 1a9bad6393ebaa72d0ce274188f6ea44 575 Pfam PF00916 Sulfate permease family 24 387 7.2E-88 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BED32_12040 1a9bad6393ebaa72d0ce274188f6ea44 575 Pfam PF01740 STAS domain 447 532 6.9E-13 T 11-10-2018 IPR002645 STAS domain BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 Pfam PF00005 ABC transporter 41 202 1.3E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 24 269 2.5E-90 T 11-10-2018 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 SMART SM00382 50 272 1.6E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 Gene3D G3DSA:3.40.50.300 20 272 5.2E-60 T 11-10-2018 BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08115 6453a1eb39f1e9717cc59287d36d5208 278 SUPERFAMILY SSF52540 24 260 4.5E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05625 34e6d8db6c0367d0ab998635ce85740a 468 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 116 420 2.4E-16 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal BED32_05625 34e6d8db6c0367d0ab998635ce85740a 468 Gene3D G3DSA:3.10.20.310 1 38 1.2E-6 T 11-10-2018 BED32_05625 34e6d8db6c0367d0ab998635ce85740a 468 Pfam PF08479 POTRA domain, ShlB-type 4 38 3.1E-6 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type BED32_05625 34e6d8db6c0367d0ab998635ce85740a 468 Gene3D G3DSA:2.40.160.50 85 465 6.2E-62 T 11-10-2018 BED32_13475 0e395f39ab60d294d574e912bea47637 151 Gene3D G3DSA:1.20.1270.380 1 89 1.1E-46 T 11-10-2018 IPR038339 MatP, N-terminal domain superfamily BED32_13475 0e395f39ab60d294d574e912bea47637 151 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 29.251 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 BED32_13475 0e395f39ab60d294d574e912bea47637 151 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 2.7E-31 T 11-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain BED32_13475 0e395f39ab60d294d574e912bea47637 151 Pfam PF06303 MatP N-terminal domain 2 85 5.6E-43 T 11-10-2018 IPR035087 MatP, N-terminal BED32_13475 0e395f39ab60d294d574e912bea47637 151 Gene3D G3DSA:1.10.1220.10 98 150 4.9E-34 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BED32_13475 0e395f39ab60d294d574e912bea47637 151 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 1.0E-66 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 BED32_20055 abc61e8960558648246ec0c846210c79 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 6 253 5.2E-128 T 11-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 BED32_20055 abc61e8960558648246ec0c846210c79 253 Gene3D G3DSA:3.40.50.1580 1 253 5.4E-80 T 11-10-2018 BED32_20055 abc61e8960558648246ec0c846210c79 253 Pfam PF01048 Phosphorylase superfamily 21 237 4.2E-39 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BED32_20055 abc61e8960558648246ec0c846210c79 253 SUPERFAMILY SSF53167 7 250 1.7E-73 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BED32_20055 abc61e8960558648246ec0c846210c79 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 66 81 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_18065 aae2454c2dec9c59a4693aeead10b932 788 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 3 767 19.922 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 BED32_18065 aae2454c2dec9c59a4693aeead10b932 788 Pfam PF04453 Organic solvent tolerance protein 307 701 1.3E-104 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 BED32_18065 aae2454c2dec9c59a4693aeead10b932 788 Gene3D G3DSA:2.60.450.10 44 143 8.8E-7 T 11-10-2018 BED32_18065 aae2454c2dec9c59a4693aeead10b932 788 Pfam PF03968 OstA-like protein 53 193 4.3E-30 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal BED32_09540 7169470473160452a16d8b3bf29efec6 557 SUPERFAMILY SSF58104 236 520 4.05E-76 T 11-10-2018 BED32_09540 7169470473160452a16d8b3bf29efec6 557 Pfam PF02203 Tar ligand binding domain homologue 1 176 4.2E-55 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_09540 7169470473160452a16d8b3bf29efec6 557 Pfam PF00672 HAMP domain 218 264 3.6E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09540 7169470473160452a16d8b3bf29efec6 557 Gene3D G3DSA:1.10.287.950 216 518 2.9E-99 T 11-10-2018 BED32_09540 7169470473160452a16d8b3bf29efec6 557 SMART SM00304 216 268 2.9E-11 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.0E-89 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 Gene3D G3DSA:1.20.120.30 22 194 1.5E-61 T 11-10-2018 BED32_09540 7169470473160452a16d8b3bf29efec6 557 SMART SM00283 269 516 5.6E-95 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 SMART SM00319 44 182 8.6E-46 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_09540 7169470473160452a16d8b3bf29efec6 557 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 11-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BED32_09540 7169470473160452a16d8b3bf29efec6 557 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 484 4.3E-59 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09540 7169470473160452a16d8b3bf29efec6 557 SUPERFAMILY SSF47170 25 182 3.66E-50 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BED32_10830 743c9a3e5670774d59f07cc3bfa388b6 140 Pfam PF02657 Fe-S metabolism associated domain 12 132 6.2E-44 T 11-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like BED32_10830 743c9a3e5670774d59f07cc3bfa388b6 140 Gene3D G3DSA:3.90.1010.10 2 139 2.8E-52 T 11-10-2018 BED32_10830 743c9a3e5670774d59f07cc3bfa388b6 140 SUPERFAMILY SSF82649 4 134 6.28E-46 T 11-10-2018 BED32_10830 743c9a3e5670774d59f07cc3bfa388b6 140 Hamap MF_01832 Cysteine desulfuration protein SufE [sufE]. 1 138 42.798 T 11-10-2018 IPR023939 Cysteine desulfuration protein SufE GO:0006790|GO:0016226 BED32_02945 12afb32942d708fcae5c486501303095 187 Gene3D G3DSA:3.40.50.1000 2 187 4.0E-60 T 11-10-2018 IPR023214 HAD superfamily BED32_02945 12afb32942d708fcae5c486501303095 187 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 25 177 9.3E-69 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_02945 12afb32942d708fcae5c486501303095 187 Pfam PF08282 haloacid dehalogenase-like hydrolase 93 161 9.5E-10 T 11-10-2018 BED32_02945 12afb32942d708fcae5c486501303095 187 PIRSF PIRSF006118 12 187 2.7E-72 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_02945 12afb32942d708fcae5c486501303095 187 SUPERFAMILY SSF56784 21 179 2.13E-41 T 11-10-2018 IPR036412 HAD-like superfamily BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 SUPERFAMILY SSF81301 1 119 4.8E-30 T 11-10-2018 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Pfam PF01966 HD domain 229 327 7.4E-13 T 11-10-2018 IPR006674 HD domain BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 211 1.4E-14 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 407 53.289 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 SMART SM00471 224 359 0.0025 T 11-10-2018 IPR003607 HD/PDEase domain BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Gene3D G3DSA:3.30.460.10 1 121 1.5E-27 T 11-10-2018 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Gene3D G3DSA:1.10.3090.10 122 410 2.1E-43 T 11-10-2018 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 SUPERFAMILY SSF81891 120 407 1.09E-55 T 11-10-2018 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 PIRSF PIRSF000813 1 408 1.0E-201 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Pfam PF01743 Poly A polymerase head domain 3 122 1.4E-17 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 BED32_03435 95e917c63133d83ec62a8ad4eaf15806 412 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 46.581 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 BED32_17045 201ff2b02d8037119b6f7cc8822ad30f 155 Pfam PF10713 Protein of unknown function (DUF2509) 18 154 2.3E-44 T 11-10-2018 IPR019652 Protein of unknown function DUF2509 BED32_16050 4e9758bad065c5199651d205a7926030 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 SUPERFAMILY SSF100934 504 615 8.24E-38 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 SUPERFAMILY SSF53067 20 196 1.68E-50 T 11-10-2018 BED32_16050 4e9758bad065c5199651d205a7926030 616 Gene3D G3DSA:3.30.420.40 194 361 4.6E-113 T 11-10-2018 BED32_16050 4e9758bad065c5199651d205a7926030 616 SUPERFAMILY SSF53067 200 377 4.57E-51 T 11-10-2018 BED32_16050 4e9758bad065c5199651d205a7926030 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 SUPERFAMILY SSF100920 384 534 7.72E-50 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 329 345 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 360 380 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 466 482 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 PRINTS PR00301 70kDa heat shock protein signature 385 404 1.5E-52 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 Gene3D G3DSA:3.30.420.40 23 374 4.6E-113 T 11-10-2018 BED32_16050 4e9758bad065c5199651d205a7926030 616 Pfam PF00012 Hsp70 protein 22 600 7.1E-198 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.804 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 BED32_16050 4e9758bad065c5199651d205a7926030 616 Gene3D G3DSA:3.90.640.10 238 311 4.6E-113 T 11-10-2018 BED32_16050 4e9758bad065c5199651d205a7926030 616 Gene3D G3DSA:1.20.1270.10 521 615 9.0E-30 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 Gene3D G3DSA:2.60.34.10 379 520 2.1E-50 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BED32_16050 4e9758bad065c5199651d205a7926030 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 3.5E-271 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 BED32_20510 3b603f98c845783206c18bddf299f6a1 608 SMART SM00060 35 140 7.3E-7 T 11-10-2018 IPR003961 Fibronectin type III GO:0005515 BED32_20510 3b603f98c845783206c18bddf299f6a1 608 Pfam PF00295 Glycosyl hydrolases family 28 323 563 1.9E-23 T 11-10-2018 IPR000743 Glycoside hydrolase, family 28 GO:0004650|GO:0005975 BED32_20510 3b603f98c845783206c18bddf299f6a1 608 SUPERFAMILY SSF51126 146 565 1.1E-71 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_20510 3b603f98c845783206c18bddf299f6a1 608 Gene3D G3DSA:2.160.20.10 152 608 1.5E-146 T 11-10-2018 IPR012334 Pectin lyase fold BED32_20510 3b603f98c845783206c18bddf299f6a1 608 SUPERFAMILY SSF49265 35 153 7.55E-10 T 11-10-2018 IPR036116 Fibronectin type III superfamily GO:0005515 BED32_20510 3b603f98c845783206c18bddf299f6a1 608 Gene3D G3DSA:2.60.40.10 36 151 1.7E-34 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09000 691f03a79ae7c081d5679112ce599465 264 Gene3D G3DSA:3.40.50.1400 3 255 3.9E-97 T 11-10-2018 BED32_09000 691f03a79ae7c081d5679112ce599465 264 PIRSF PIRSF033579 1 264 2.1E-99 T 11-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BED32_09000 691f03a79ae7c081d5679112ce599465 264 SUPERFAMILY SSF53800 2 256 2.29E-81 T 11-10-2018 BED32_09000 691f03a79ae7c081d5679112ce599465 264 Gene3D G3DSA:3.40.50.1400 114 236 3.9E-97 T 11-10-2018 BED32_09000 691f03a79ae7c081d5679112ce599465 264 Pfam PF06180 Cobalt chelatase (CbiK) 3 256 5.5E-95 T 11-10-2018 IPR010388 Anaerobic cobalt chelatase GO:0016852|GO:0019251 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 374 1.9E-130 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 SUPERFAMILY SSF52402 175 373 7.06E-42 T 11-10-2018 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 SUPERFAMILY SSF143437 1 174 2.27E-47 T 11-10-2018 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 384 483 8.7E-43 T 11-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Gene3D G3DSA:3.30.2130.30 1 175 2.1E-35 T 11-10-2018 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 SMART SM00981 76 166 4.3E-23 T 11-10-2018 IPR004114 THUMP domain GO:0003723 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 SUPERFAMILY SSF52821 392 482 1.83E-11 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 176 370 1.7E-79 T 11-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Pfam PF02926 THUMP domain 30 162 9.5E-24 T 11-10-2018 IPR004114 THUMP domain GO:0003723 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 483 230.569 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Gene3D G3DSA:3.40.250.10 398 483 2.6E-9 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_06000 3daca3ec3d1123847b65db5af65d5c82 483 Gene3D G3DSA:3.40.50.620 176 397 2.6E-53 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 Gene3D G3DSA:3.20.20.140 321 340 6.5E-8 T 11-10-2018 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 Gene3D G3DSA:2.30.40.10 2 49 1.1E-6 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 SUPERFAMILY SSF51338 2 381 4.28E-7 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 Gene3D G3DSA:3.20.20.140 50 102 1.1E-6 T 11-10-2018 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 Pfam PF07969 Amidohydrolase family 228 381 2.9E-11 T 11-10-2018 IPR013108 Amidohydrolase 3 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 SUPERFAMILY SSF51556 50 345 3.86E-20 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 Gene3D G3DSA:2.30.40.10 341 372 6.5E-8 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 PIRSF PIRSF038971 1 382 5.3E-153 T 11-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_18765 e014a9dee5b273677a4408df6e1ed33b 382 TIGRFAM TIGR02318 phosphono_phnM: phosphonate metabolism protein PhnM 3 381 1.2E-150 T 11-10-2018 IPR012696 Phosphonate metabolism PhnM GO:0019700 KEGG: 00440+3.6.1.63|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_02070 f467919b4f7b7ce13896208d86a11c43 181 Pfam PF01300 Telomere recombination 6 156 2.7E-43 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 BED32_02070 f467919b4f7b7ce13896208d86a11c43 181 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 1 179 40.545 T 11-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 BED32_02070 f467919b4f7b7ce13896208d86a11c43 181 SUPERFAMILY SSF55821 3 177 3.05E-54 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BED32_02070 f467919b4f7b7ce13896208d86a11c43 181 Gene3D G3DSA:3.90.870.10 1 179 3.4E-63 T 11-10-2018 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 SMART SM00411 1 90 7.6E-44 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 Gene3D G3DSA:4.10.520.10 1 90 2.8E-37 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 8.8E-33 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_19765 8d65bf34bbfb1d8cb96c87277f5d9842 91 SUPERFAMILY SSF47729 1 90 5.0E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 Pfam PF01255 Putative undecaprenyl diphosphate synthase 22 242 4.4E-78 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 15 243 39.526 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 SUPERFAMILY SSF64005 15 238 8.24E-86 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 Gene3D G3DSA:3.40.1180.10 4 244 1.7E-90 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 16 242 9.2E-101 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 BED32_16865 469cc31a3e2c5c0a225351d462512877 252 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 188 205 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 BED32_13500 f9b1ce97f77abfa7f455f3bd962c57e1 183 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 25 179 7.0E-40 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component BED32_13500 f9b1ce97f77abfa7f455f3bd962c57e1 183 Gene3D G3DSA:3.40.50.10610 13 148 8.3E-7 T 11-10-2018 BED32_13500 f9b1ce97f77abfa7f455f3bd962c57e1 183 SUPERFAMILY SSF159594 23 182 6.8E-29 T 11-10-2018 BED32_07595 22aad295252b4d198d44818885b7da45 175 PIRSF PIRSF038996 1 172 5.7E-70 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 BED32_07595 22aad295252b4d198d44818885b7da45 175 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 BED32_07595 22aad295252b4d198d44818885b7da45 175 Pfam PF00258 Flavodoxin 6 160 1.8E-32 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BED32_07595 22aad295252b4d198d44818885b7da45 175 Gene3D G3DSA:3.40.50.360 2 175 1.2E-58 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_07595 22aad295252b4d198d44818885b7da45 175 SUPERFAMILY SSF52218 4 171 7.69E-54 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_07595 22aad295252b4d198d44818885b7da45 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 2.0E-76 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 SUPERFAMILY SSF51182 16 253 2.45E-67 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 Gene3D G3DSA:2.60.120.10 15 122 6.2E-38 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 264 4.2E-99 T 11-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 Pfam PF04962 KduI/IolB family 9 264 2.5E-109 T 11-10-2018 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507 BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 PIRSF PIRSF036628 1 270 4.7E-111 T 11-10-2018 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30 BED32_01320 1db297e505b1477bddb565bbd5c2890e 274 Gene3D G3DSA:2.60.120.10 123 271 1.2E-61 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 SUPERFAMILY SSF51604 108 315 7.34E-50 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 SUPERFAMILY SSF54826 1 97 2.08E-28 T 11-10-2018 BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 SMART SM00922 115 210 8.7E-9 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 Gene3D G3DSA:3.20.20.120 98 295 5.1E-126 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 Pfam PF13378 Enolase C-terminal domain-like 127 274 1.7E-14 T 11-10-2018 IPR029065 Enolase C-terminal domain-like BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 321 23.367 T 11-10-2018 IPR010196 o-Succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00130+4.2.1.113|MetaCyc: PWY-5837 BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 Gene3D G3DSA:3.30.390.10 4 302 5.1E-126 T 11-10-2018 IPR029017 Enolase-like, N-terminal BED32_14470 c93f115e20d5860621cc9342a18adbfc 323 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 307 2.3E-114 T 11-10-2018 BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 SMART SM00420 18 70 6.9E-21 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 ProSitePatterns PS00894 DeoR-type HTH domain signature. 18 52 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 SMART SM01134 87 248 3.1E-71 T 11-10-2018 BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 SUPERFAMILY SSF100950 88 250 1.76E-33 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 Gene3D G3DSA:1.10.10.10 4 67 2.6E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 Pfam PF08220 DeoR-like helix-turn-helix domain 18 72 2.0E-19 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 SUPERFAMILY SSF46785 16 70 5.33E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10095 8a49cd40a3757d1d40657bc3033ed23c 269 Pfam PF00455 DeoR C terminal sensor domain 89 247 9.3E-56 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_06685 17431446ea44f52b09de7effba9437e8 77 Gene3D G3DSA:1.20.58.250 1 76 3.4E-34 T 11-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06685 17431446ea44f52b09de7effba9437e8 77 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 1 73 1.0E-21 T 11-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06685 17431446ea44f52b09de7effba9437e8 77 Pfam PF06440 DNA polymerase III, theta subunit 3 71 9.3E-37 T 11-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06685 17431446ea44f52b09de7effba9437e8 77 SUPERFAMILY SSF46575 1 73 7.32E-32 T 11-10-2018 BED32_21865 2ec8ebf8942ce9b96a24279aa3cb9e73 288 SUPERFAMILY SSF54423 60 109 2.75E-5 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 BED32_21865 2ec8ebf8942ce9b96a24279aa3cb9e73 288 Pfam PF13098 Thioredoxin-like domain 142 264 1.1E-12 T 11-10-2018 IPR012336 Thioredoxin-like fold BED32_21865 2ec8ebf8942ce9b96a24279aa3cb9e73 288 Pfam PF10411 Disulfide bond isomerase protein N-terminus 55 92 6.1E-8 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal BED32_21865 2ec8ebf8942ce9b96a24279aa3cb9e73 288 SUPERFAMILY SSF52833 121 267 1.14E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_21865 2ec8ebf8942ce9b96a24279aa3cb9e73 288 Gene3D G3DSA:3.40.30.10 107 269 4.6E-26 T 11-10-2018 BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 Pfam PF06725 3D domain 279 356 2.4E-25 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 PIRSF PIRSF019422 1 367 8.9E-87 T 11-10-2018 IPR026044 Membrane-bound lytic murein transglycosylase A BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 SMART SM00925 125 259 6.3E-73 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 Pfam PF03562 MltA specific insert domain 103 259 1.3E-41 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 SUPERFAMILY SSF50685 25 355 4.53E-110 T 11-10-2018 IPR036908 RlpA-like domain superfamily BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 Gene3D G3DSA:2.40.40.10 54 355 1.6E-154 T 11-10-2018 IPR036908 RlpA-like domain superfamily BED32_16990 8bf9bd0ad2b4324911a0e916eec297b6 390 Gene3D G3DSA:2.40.240.50 125 264 1.6E-154 T 11-10-2018 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Hamap MF_01162 Bifunctional protein Aas [aas]. 1 717 57.507 T 11-10-2018 IPR023775 Bifunctional protein Aas GO:0006631|GO:0008654|GO:0008779|GO:0008922 KEGG: 00071+6.2.1.20|KEGG: 00564+2.3.1.40|MetaCyc: PWY-6622|MetaCyc: PWY-7032 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 ProSitePatterns PS00455 Putative AMP-binding domain signature. 370 381 - T 11-10-2018 IPR020845 AMP-binding, conserved site BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Gene3D G3DSA:3.40.50.12780 194 614 2.1E-75 T 11-10-2018 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Pfam PF00501 AMP-binding enzyme 233 619 5.8E-65 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 SUPERFAMILY SSF69593 10 167 3.66E-17 T 11-10-2018 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Pfam PF01553 Acyltransferase 24 136 3.0E-14 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Pfam PF13193 AMP-binding enzyme C-terminal domain 637 701 1.6E-5 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 SUPERFAMILY SSF56801 215 714 3.53E-97 T 11-10-2018 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 SMART SM00563 30 140 6.4E-22 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_17105 edd23b354eacaef20bb125fa1e01109a 718 Gene3D G3DSA:3.30.300.30 616 715 9.0E-10 T 11-10-2018 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 SUPERFAMILY SSF52518 356 544 6.08E-50 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 384 528 3.6E-20 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 178 5.0E-34 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 SUPERFAMILY SSF52467 167 335 3.93E-31 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 330 1.1E-21 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 SUPERFAMILY SSF52518 5 176 4.12E-42 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Gene3D G3DSA:3.40.50.970 1 184 1.2E-74 T 11-10-2018 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Gene3D G3DSA:3.40.50.970 356 544 1.0E-63 T 11-10-2018 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 PIRSF PIRSF036565 1 552 1.2E-205 T 11-10-2018 IPR012110 Thiamine pyrophosphate (TPP)-dependent enzyme GO:0016831 BED32_15250 54022d9e25d855dbfd8ab1637a931b5a 553 Gene3D G3DSA:3.40.50.1220 191 347 1.6E-44 T 11-10-2018 BED32_12350 d869010df86d473ffa7f2d865060791b 186 Pfam PF06185 YecM protein 10 183 2.0E-68 T 11-10-2018 IPR010393 Protein of unknown function DUF991 BED32_12350 d869010df86d473ffa7f2d865060791b 186 Gene3D G3DSA:3.10.180.10 1 186 4.9E-67 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_12350 d869010df86d473ffa7f2d865060791b 186 SUPERFAMILY SSF54593 5 183 1.24E-66 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_08095 d20a4f8db9f0b82a614b3d632a457d3f 179 SMART SM01118 8 179 2.4E-12 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BED32_08095 d20a4f8db9f0b82a614b3d632a457d3f 179 ProDom PD009560 CYCLASE ADENYLATE CYCLASE ADENYLYL CYAB LYASE CLASS CYAB-TYPE THERMOPHILIC MJ0240 9 148 1.0E-7 T 11-10-2018 BED32_08095 d20a4f8db9f0b82a614b3d632a457d3f 179 SUPERFAMILY SSF55154 8 177 1.64E-36 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 BED32_08095 d20a4f8db9f0b82a614b3d632a457d3f 179 Gene3D G3DSA:2.40.320.10 1 179 5.8E-46 T 11-10-2018 BED32_08095 d20a4f8db9f0b82a614b3d632a457d3f 179 Pfam PF01928 CYTH domain 9 173 6.7E-22 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 BED32_04645 409ac930f5381d1f652838174d32e241 332 Gene3D G3DSA:1.10.10.10 246 322 9.4E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04645 409ac930f5381d1f652838174d32e241 332 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 330 5.0E-144 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_04645 409ac930f5381d1f652838174d32e241 332 Pfam PF04545 Sigma-70, region 4 264 317 2.7E-15 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 12 330 39.918 T 11-10-2018 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_04645 409ac930f5381d1f652838174d32e241 332 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 120 133 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 289 315 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 Gene3D G3DSA:1.10.10.10 169 244 5.7E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04645 409ac930f5381d1f652838174d32e241 332 Gene3D G3DSA:1.10.601.10 86 168 5.5E-46 T 11-10-2018 BED32_04645 409ac930f5381d1f652838174d32e241 332 SUPERFAMILY SSF88659 227 324 1.55E-23 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_04645 409ac930f5381d1f652838174d32e241 332 SUPERFAMILY SSF88659 169 243 8.72E-15 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_04645 409ac930f5381d1f652838174d32e241 332 SUPERFAMILY SSF88946 58 166 1.96E-45 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 93 319 4.2E-35 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 PRINTS PR00046 Major sigma-70 factor signature 268 280 2.5E-27 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 PRINTS PR00046 Major sigma-70 factor signature 304 315 2.5E-27 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 PRINTS PR00046 Major sigma-70 factor signature 289 304 2.5E-27 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 PRINTS PR00046 Major sigma-70 factor signature 120 133 2.5E-27 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 PRINTS PR00046 Major sigma-70 factor signature 144 152 2.5E-27 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 Pfam PF04539 Sigma-70 region 3 176 250 2.5E-20 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 Pfam PF04542 Sigma-70 region 2 96 165 3.2E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_04645 409ac930f5381d1f652838174d32e241 332 Pfam PF00140 Sigma-70 factor, region 1.2 58 89 5.1E-11 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_21350 e932316ef34915eea28cff3497e802b3 476 SUPERFAMILY SSF103473 13 452 4.32E-58 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_21350 e932316ef34915eea28cff3497e802b3 476 PRINTS PR01036 Tetracycline resistance protein TetB signature 396 415 3.6E-6 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 PRINTS PR01036 Tetracycline resistance protein TetB signature 14 38 3.6E-6 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 3.6E-6 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 PRINTS PR01036 Tetracycline resistance protein TetB signature 105 125 3.6E-6 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 Gene3D G3DSA:1.20.1250.20 256 454 1.9E-13 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 Pfam PF07690 Major Facilitator Superfamily 16 405 9.0E-42 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_21350 e932316ef34915eea28cff3497e802b3 476 Gene3D G3DSA:1.20.1720.10 13 246 3.2E-43 T 11-10-2018 BED32_21350 e932316ef34915eea28cff3497e802b3 476 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 17 431 1.5E-70 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 SMART SM00382 184 323 1.9E-26 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Gene3D G3DSA:1.10.8.60 322 396 5.3E-28 T 11-10-2018 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 100 593 1.1E-246 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Gene3D G3DSA:2.40.50.920 24 100 1.2E-36 T 11-10-2018 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Gene3D G3DSA:1.20.58.760 397 600 1.5E-69 T 11-10-2018 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 188 320 6.4E-46 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Pfam PF06480 FtsH Extracellular 5 93 9.8E-15 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 608 37.313 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Pfam PF01434 Peptidase family M41 382 591 9.5E-82 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 SUPERFAMILY SSF140990 402 601 1.44E-72 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 SUPERFAMILY SSF52540 142 391 2.96E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 Gene3D G3DSA:3.40.50.300 141 320 1.1E-70 T 11-10-2018 BED32_18965 202e4d0f4b3a474742053ac48cca73e7 644 ProSitePatterns PS00674 AAA-protein family signature. 291 309 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 BED32_13240 96930485ac1e4431aa6cd09d8287c816 194 SMART SM00421 130 187 8.8E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13240 96930485ac1e4431aa6cd09d8287c816 194 Pfam PF00196 Bacterial regulatory proteins, luxR family 133 183 2.4E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13240 96930485ac1e4431aa6cd09d8287c816 194 SUPERFAMILY SSF46894 127 188 3.74E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_13240 96930485ac1e4431aa6cd09d8287c816 194 Gene3D G3DSA:1.10.10.10 100 190 8.7E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_19505 11a6a93911ce88a2b79b8d76fa8c11af 322 PIRSF PIRSF018266 3 318 7.5E-74 T 11-10-2018 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component BED32_19505 11a6a93911ce88a2b79b8d76fa8c11af 322 Pfam PF16220 Domain of unknown function (DUF4880) 14 55 2.7E-10 T 11-10-2018 IPR032623 FecR, N-terminal BED32_19505 11a6a93911ce88a2b79b8d76fa8c11af 322 Pfam PF04773 FecR protein 117 201 2.2E-19 T 11-10-2018 IPR006860 FecR protein BED32_19505 11a6a93911ce88a2b79b8d76fa8c11af 322 Gene3D G3DSA:2.60.120.1440 102 239 1.4E-23 T 11-10-2018 BED32_02970 4384821a77b8c1d90556b3da321b5b0f 186 Pfam PF02470 MlaD protein 39 116 1.2E-18 T 11-10-2018 IPR003399 Mce/MlaD BED32_02970 4384821a77b8c1d90556b3da321b5b0f 186 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 3 152 8.8E-54 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 Pfam PF02152 Dihydroneopterin aldolase 4 113 3.2E-32 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 SUPERFAMILY SSF55620 1 115 1.89E-37 T 11-10-2018 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 SMART SM00905 4 114 4.0E-48 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 4 114 6.0E-29 T 11-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 TIGRFAM TIGR00526 folB_dom: FolB domain 1 117 1.4E-40 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 BED32_03425 6587405002ef6e4a9c4867ffead46f9c 119 Gene3D G3DSA:3.30.1130.10 1 119 3.9E-45 T 11-10-2018 BED32_03850 9125d4c2050c304d9858f93949957c32 238 Pfam PF02108 Flagellar assembly protein FliH 99 223 1.5E-28 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BED32_03850 9125d4c2050c304d9858f93949957c32 238 Pfam PF09811 Essential protein Yae1, N terminal 49 86 3.2E-9 T 11-10-2018 IPR019191 Essential protein Yae1, N-terminal BED32_03850 9125d4c2050c304d9858f93949957c32 238 PRINTS PR01003 Flagellar assembly protein FliH signature 78 96 4.4E-6 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 BED32_03850 9125d4c2050c304d9858f93949957c32 238 PRINTS PR01003 Flagellar assembly protein FliH signature 55 77 4.4E-6 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 BED32_03850 9125d4c2050c304d9858f93949957c32 238 PRINTS PR01003 Flagellar assembly protein FliH signature 188 204 4.4E-6 T 11-10-2018 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 BED32_16950 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_16950 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_09935 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_09935 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_05980 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_05980 646d18f70f06cd02c349a4b5097a7a6c 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 Gene3D G3DSA:1.10.10.10 2 109 3.8E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 44 55 8.8E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 72 87 8.8E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 57 72 8.8E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 25 40 8.8E-13 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 Pfam PF01022 Bacterial regulatory protein, arsR family 31 76 1.8E-14 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 SMART SM00418 23 101 1.6E-26 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_04400 ed986b353ab7b4ca3a6d7dadaeefd9c0 111 SUPERFAMILY SSF46785 7 105 7.45E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 TIGRFAM TIGR03328 salvage_mtnB: methylthioribulose-1-phosphate dehydratase 11 199 1.2E-70 T 11-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 SUPERFAMILY SSF53639 7 201 1.94E-44 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 Gene3D G3DSA:3.40.225.10 2 199 2.3E-49 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 195 4.7E-41 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 Hamap MF_01677 Methylthioribulose-1-phosphate dehydratase [mtnB]. 1 204 120.476 T 11-10-2018 IPR017714 Methylthioribulose-1-phosphate dehydratase GO:0005737|GO:0019509|GO:0046872 KEGG: 00270+4.2.1.109|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BED32_05600 6aa4ef9c5ed1dbb57265629bd8e59045 210 SMART SM01007 8 196 4.3E-50 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:3.40.50.280 766 917 1.6E-56 T 11-10-2018 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SUPERFAMILY SSF82282 30 422 4.05E-115 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SUPERFAMILY SSF56507 925 1248 1.1E-133 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SMART SM01018 679 762 7.3E-44 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SUPERFAMILY SSF52242 766 916 1.44E-46 T 11-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 TIGRFAM TIGR02082 metH: methionine synthase 36 1214 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SUPERFAMILY SSF51717 379 653 6.02E-88 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 960 1230 1.3E-124 T 11-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:1.10.1240.10 671 759 3.1E-40 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:3.20.20.20 363 665 1.3E-127 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 PIRSF PIRSF000381 24 1217 0.0 T 11-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:3.20.20.330 24 361 3.8E-124 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Pfam PF02574 Homocysteine S-methyltransferase 40 348 1.7E-79 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 SUPERFAMILY SSF47644 675 761 5.49E-28 T 11-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Pfam PF00809 Pterin binding enzyme 383 621 1.1E-60 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:3.10.196.10 931 1245 7.3E-150 T 11-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Pfam PF02607 B12 binding domain 682 755 1.4E-23 T 11-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Gene3D G3DSA:1.10.288.10 958 1114 7.3E-150 T 11-10-2018 BED32_02140 2dc5b1c91855122bca6c4aa53531f2a2 1249 Pfam PF02310 B12 binding domain 770 862 1.4E-18 T 11-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 SUPERFAMILY SSF46548 516 691 4.06E-8 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 Gene3D G3DSA:3.30.465.40 19 210 4.7E-45 T 11-10-2018 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 Pfam PF13183 4Fe-4S dicluster domain 577 688 1.6E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 674 685 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 Pfam PF01565 FAD binding domain 52 192 3.4E-36 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 SUPERFAMILY SSF55103 258 542 1.31E-52 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 Pfam PF02913 FAD linked oxidases, C-terminal domain 281 539 1.2E-63 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 BED32_10795 50c7736bdd692d9997701e92fb84a965 1018 SUPERFAMILY SSF56176 18 282 3.19E-53 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_18475 610714ac6cd4ae2e4d2f64d4d7f8f12f 391 Gene3D G3DSA:1.20.1250.20 8 191 8.1E-10 T 11-10-2018 BED32_18475 610714ac6cd4ae2e4d2f64d4d7f8f12f 391 SUPERFAMILY SSF103473 8 381 1.31E-32 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_18475 610714ac6cd4ae2e4d2f64d4d7f8f12f 391 Pfam PF07690 Major Facilitator Superfamily 15 324 1.1E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_18475 610714ac6cd4ae2e4d2f64d4d7f8f12f 391 Gene3D G3DSA:1.20.1250.20 198 382 2.2E-18 T 11-10-2018 BED32_11560 14535bbc3463aaf8255364449644f0ee 364 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 14 360 28.416 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 BED32_11560 14535bbc3463aaf8255364449644f0ee 364 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 19 359 7.0E-140 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 BED32_11560 14535bbc3463aaf8255364449644f0ee 364 Pfam PF03116 NQR2, RnfD, RnfE family 16 358 4.8E-110 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 BED32_19085 8245d6e653c1cceb4f6475be8ea53249 220 Pfam PF01625 Peptide methionine sulfoxide reductase 54 207 1.6E-63 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BED32_19085 8245d6e653c1cceb4f6475be8ea53249 220 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 52 207 2.5E-65 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BED32_19085 8245d6e653c1cceb4f6475be8ea53249 220 Gene3D G3DSA:3.30.1060.10 13 220 2.5E-85 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BED32_19085 8245d6e653c1cceb4f6475be8ea53249 220 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 51 213 37.838 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BED32_19085 8245d6e653c1cceb4f6475be8ea53249 220 SUPERFAMILY SSF55068 14 216 3.4E-81 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 BED32_03345 a7cd9af2e8aa436f23bacc1740a39ab1 314 TIGRFAM TIGR03814 Gln_ase: glutaminase A 12 309 4.3E-108 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_03345 a7cd9af2e8aa436f23bacc1740a39ab1 314 Hamap MF_00313 Glutaminase [glsA]. 7 309 40.858 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_03345 a7cd9af2e8aa436f23bacc1740a39ab1 314 SUPERFAMILY SSF56601 5 309 1.92E-104 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_03345 a7cd9af2e8aa436f23bacc1740a39ab1 314 Gene3D G3DSA:3.40.710.10 2 311 1.4E-111 T 11-10-2018 BED32_03345 a7cd9af2e8aa436f23bacc1740a39ab1 314 Pfam PF04960 Glutaminase 25 309 1.6E-99 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_16505 019be9e5dd86ba083b5455211270e6a8 268 Gene3D G3DSA:1.10.3720.10 60 263 2.1E-19 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16505 019be9e5dd86ba083b5455211270e6a8 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 262 1.7E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_16505 019be9e5dd86ba083b5455211270e6a8 268 SUPERFAMILY SSF161098 65 256 6.8E-24 T 11-10-2018 IPR035906 MetI-like superfamily BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 Pfam PF00664 ABC transporter transmembrane region 19 289 1.7E-37 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 SUPERFAMILY SSF90123 5 317 3.53E-70 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 Pfam PF00005 ABC transporter 350 498 6.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 Gene3D G3DSA:3.40.50.300 324 584 1.0E-78 T 11-10-2018 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 SUPERFAMILY SSF52540 325 570 2.36E-80 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 Gene3D G3DSA:1.20.1560.10 2 317 8.9E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_06140 f403f067076a461f501af0f06f9cc6bf 586 SMART SM00382 359 545 6.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11055 a27efa77678ff266b048be1892b02339 321 SUPERFAMILY SSF161098 69 300 2.22E-23 T 11-10-2018 IPR035906 MetI-like superfamily BED32_11055 a27efa77678ff266b048be1892b02339 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 4.7E-43 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_21185 4dc49b2e66a19533804a52619d68f445 230 Pfam PF00588 SpoU rRNA Methylase family 20 159 4.2E-35 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BED32_21185 4dc49b2e66a19533804a52619d68f445 230 SUPERFAMILY SSF75217 4 183 2.35E-49 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_21185 4dc49b2e66a19533804a52619d68f445 230 Gene3D G3DSA:3.40.1280.10 1 204 3.9E-63 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_21185 4dc49b2e66a19533804a52619d68f445 230 Hamap MF_02060 tRNA (guanosine(18)-2'-O)-methyltransferase [trmH]. 2 197 36.698 T 11-10-2018 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase GO:0008168|GO:0030488 BED32_21185 4dc49b2e66a19533804a52619d68f445 230 Pfam PF12105 SpoU, rRNA methylase, C-terminal 163 218 1.0E-24 T 11-10-2018 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal GO:0009020 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 PIRSF PIRSF000112 2 362 9.5E-114 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 SUPERFAMILY SSF56796 10 357 3.4E-61 T 11-10-2018 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 152 180 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 Gene3D G3DSA:3.40.50.1970 2 160 4.5E-25 T 11-10-2018 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 350 6.4E-47 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BED32_08770 6a00a664e5e66aa35e1efd8abc05210a 363 Gene3D G3DSA:1.20.1090.10 162 363 2.0E-57 T 11-10-2018 BED32_07645 26ef1d74d8b979ec53505126ae113dfd 212 Pfam PF02669 K+-transporting ATPase, c chain 17 198 1.8E-69 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BED32_07645 26ef1d74d8b979ec53505126ae113dfd 212 PIRSF PIRSF001296 12 204 9.2E-76 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BED32_07645 26ef1d74d8b979ec53505126ae113dfd 212 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 13 200 33.717 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BED32_07645 26ef1d74d8b979ec53505126ae113dfd 212 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 16 199 8.9E-72 T 11-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 BED32_14975 6c7f25569b1587eaaeb8d788b9d45579 154 SUPERFAMILY SSF82093 20 133 4.97E-41 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 BED32_14975 6c7f25569b1587eaaeb8d788b9d45579 154 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 1 137 28.114 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BED32_14975 6c7f25569b1587eaaeb8d788b9d45579 154 Pfam PF03100 CcmE 2 127 9.0E-43 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 BED32_14975 6c7f25569b1587eaaeb8d788b9d45579 154 Gene3D G3DSA:2.40.50.140 20 133 8.8E-43 T 11-10-2018 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Gene3D G3DSA:1.20.58.410 1 44 2.2E-8 T 11-10-2018 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 293 32.121 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Gene3D G3DSA:3.30.70.1660 58 286 6.7E-98 T 11-10-2018 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 SUPERFAMILY SSF75620 2 292 6.41E-130 T 11-10-2018 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Pfam PF00472 RF-1 domain 156 265 1.7E-41 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 291 3.1E-152 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 SMART SM00937 13 123 9.1E-57 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Gene3D G3DSA:3.30.160.20 154 249 6.7E-98 T 11-10-2018 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 Pfam PF03462 PCRF domain 7 147 5.1E-46 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 BED32_17400 37ccc87c385b8855b835b19d6c85621b 293 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 173 189 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_13770 a529c92172818cf718bbcd8564f12493 236 SUPERFAMILY SSF55729 3 229 1.38E-94 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_13770 a529c92172818cf718bbcd8564f12493 236 Gene3D G3DSA:2.30.210.20 2 61 5.1E-27 T 11-10-2018 BED32_13770 a529c92172818cf718bbcd8564f12493 236 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 236 97.264 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BED32_13770 a529c92172818cf718bbcd8564f12493 236 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 36 203 4.6E-73 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BED32_13770 a529c92172818cf718bbcd8564f12493 236 Gene3D G3DSA:3.40.630.70 62 235 5.2E-69 T 11-10-2018 BED32_13770 a529c92172818cf718bbcd8564f12493 236 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 39 214 9.2E-76 T 11-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 SUPERFAMILY SSF53335 396 701 2.11E-67 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Gene3D G3DSA:3.40.50.150 484 702 2.3E-74 T 11-10-2018 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 11-10-2018 IPR000241 Putative RNA methylase domain BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Gene3D G3DSA:3.30.2130.30 5 255 3.8E-144 T 11-10-2018 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 PIRSF PIRSF037618 1 703 2.2E-294 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Gene3D G3DSA:3.30.750.80 392 483 1.1E-35 T 11-10-2018 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 441 663 1.2E-18 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Gene3D G3DSA:3.40.50.150 169 372 3.8E-144 T 11-10-2018 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Pfam PF01170 Putative RNA methylase family UPF0020 162 375 1.5E-60 T 11-10-2018 IPR000241 Putative RNA methylase domain BED32_13520 956acb55848efaa4656083dfad4cc74c 706 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 306 312 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 SUPERFAMILY SSF53335 147 372 2.73E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Pfam PF02926 THUMP domain 23 152 5.5E-15 T 11-10-2018 IPR004114 THUMP domain GO:0003723 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 SMART SM00981 56 154 4.1E-18 T 11-10-2018 IPR004114 THUMP domain GO:0003723 BED32_13520 956acb55848efaa4656083dfad4cc74c 706 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 702 32.177 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 Gene3D G3DSA:3.90.1150.10 10 395 5.4E-183 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 Gene3D G3DSA:3.40.640.10 37 289 5.4E-183 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 SUPERFAMILY SSF53383 6 416 2.06E-181 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 Pfam PF00464 Serine hydroxymethyltransferase 8 386 1.7E-185 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 PIRSF PIRSF000412 1 417 6.2E-170 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BED32_16110 69d3e02e437e4d3243249cea7d40e114 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.455 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 554 32.333 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 420 536 2.4E-6 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 133 2.2E-26 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 SUPERFAMILY SSF52518 366 553 1.55E-30 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Gene3D G3DSA:3.40.50.1220 212 337 3.8E-46 T 11-10-2018 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Pfam PF16582 Middle domain of thiamine pyrophosphate 184 389 1.7E-86 T 11-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 SUPERFAMILY SSF52518 7 175 2.3E-30 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 PIRSF PIRSF004983 1 557 2.1E-175 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 SUPERFAMILY SSF52467 204 360 1.5E-6 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 431 5.5E-139 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Gene3D G3DSA:3.40.50.970 1 196 3.2E-61 T 11-10-2018 BED32_14485 7869eb6a3a5a86161a4cfd94b1ba8c2c 557 Gene3D G3DSA:3.40.50.970 354 557 3.1E-60 T 11-10-2018 BED32_12530 d38ecac328ed585481eaa232259f7127 390 Pfam PF07690 Major Facilitator Superfamily 22 244 2.2E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_12530 d38ecac328ed585481eaa232259f7127 390 SUPERFAMILY SSF103473 22 385 2.62E-39 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_12530 d38ecac328ed585481eaa232259f7127 390 Gene3D G3DSA:1.20.1250.20 200 385 3.1E-20 T 11-10-2018 BED32_12530 d38ecac328ed585481eaa232259f7127 390 Gene3D G3DSA:1.20.1250.20 19 196 1.8E-18 T 11-10-2018 BED32_19335 4edabfa6f1db45e6895d3743a625ca65 112 Pfam PF13698 Domain of unknown function (DUF4156) 22 111 6.1E-31 T 11-10-2018 IPR025294 Protein of unknown function DUF4156 BED32_21295 f010df11bb17221359871d405176df73 328 Gene3D G3DSA:3.30.200.70 13 108 3.6E-124 T 11-10-2018 BED32_21295 f010df11bb17221359871d405176df73 328 Gene3D G3DSA:1.20.1270.170 149 307 3.6E-124 T 11-10-2018 BED32_21295 f010df11bb17221359871d405176df73 328 Pfam PF01636 Phosphotransferase enzyme family 33 258 1.2E-44 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase BED32_21295 f010df11bb17221359871d405176df73 328 Gene3D G3DSA:1.10.510.10 60 258 3.6E-124 T 11-10-2018 BED32_21295 f010df11bb17221359871d405176df73 328 SUPERFAMILY SSF56112 6 327 2.77E-88 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_21295 f010df11bb17221359871d405176df73 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 46.514 T 11-10-2018 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_16340 fec4def8b89eaa4ea880899f82d18e51 293 SUPERFAMILY SSF111331 9 290 8.76E-94 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily BED32_16340 fec4def8b89eaa4ea880899f82d18e51 293 Gene3D G3DSA:2.60.200.30 129 265 1.6E-100 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BED32_16340 fec4def8b89eaa4ea880899f82d18e51 293 Gene3D G3DSA:3.40.50.10330 24 288 1.6E-100 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 BED32_16340 fec4def8b89eaa4ea880899f82d18e51 293 Hamap MF_00361 NAD kinase [nadK]. 7 288 33.865 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BED32_16340 fec4def8b89eaa4ea880899f82d18e51 293 Pfam PF01513 ATP-NAD kinase 9 272 7.6E-76 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 BED32_13870 974451ea21d201e1dbf2c0d159db10b1 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 25 231 3.3E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_13870 974451ea21d201e1dbf2c0d159db10b1 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 4 79 2.9E-12 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_13870 974451ea21d201e1dbf2c0d159db10b1 238 Gene3D G3DSA:1.10.3720.10 2 233 8.3E-47 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13870 974451ea21d201e1dbf2c0d159db10b1 238 SUPERFAMILY SSF161098 7 216 1.06E-35 T 11-10-2018 IPR035906 MetI-like superfamily BED32_09350 eb6e5b4e933c72227dc2cc881ad55501 176 SUPERFAMILY SSF49401 25 175 4.57E-27 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_09350 eb6e5b4e933c72227dc2cc881ad55501 176 Gene3D G3DSA:2.60.40.1090 22 176 1.1E-26 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_09350 eb6e5b4e933c72227dc2cc881ad55501 176 Pfam PF00419 Fimbrial protein 26 175 5.5E-12 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:1.10.132.60 638 782 3.3E-61 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:3.30.70.2250 34 100 6.3E-56 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Pfam PF03104 DNA polymerase family B, exonuclease domain 66 158 3.3E-5 T 11-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Pfam PF03104 DNA polymerase family B, exonuclease domain 202 294 5.0E-5 T 11-10-2018 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:3.90.1600.30 510 635 9.0E-9 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:1.10.287.690 463 509 3.2E-25 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 ProSitePatterns PS00116 DNA polymerase family B signature. 541 549 - T 11-10-2018 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:3.30.420.10 146 345 1.3E-72 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:2.40.50.590 1 143 6.3E-56 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Pfam PF00136 DNA polymerase family B 378 735 9.1E-42 T 11-10-2018 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 SUPERFAMILY SSF56672 383 776 2.84E-118 T 11-10-2018 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 Gene3D G3DSA:3.90.1600.10 346 449 4.2E-30 T 11-10-2018 IPR023211 DNA polymerase, palm domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 SMART SM00486 143 553 3.0E-64 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 SUPERFAMILY SSF53098 1 387 6.17E-91 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 413 426 7.0E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 539 547 7.0E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18040 9ccb37eb8568a8be833bc14801a0c02c 782 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 487 499 7.0E-10 T 11-10-2018 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 SUPERFAMILY SSF46785 2 53 8.95E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Gene3D G3DSA:3.30.930.10 58 263 7.2E-75 T 11-10-2018 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 SUPERFAMILY SSF50037 264 310 1.14E-11 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Pfam PF03099 Biotin/lipoate A/B protein ligase family 77 201 4.4E-25 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Gene3D G3DSA:2.30.30.100 264 306 6.6E-23 T 11-10-2018 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 74 310 1.4E-77 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Gene3D G3DSA:1.10.10.10 1 57 4.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 2 310 32.428 T 11-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Pfam PF02237 Biotin protein ligase C terminal domain 265 310 2.4E-12 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 1 66 7.1E-23 T 11-10-2018 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 SUPERFAMILY SSF55681 64 261 2.41E-59 T 11-10-2018 BED32_19910 a5f724c5cba559f5adfc28102e389440 312 Pfam PF08279 HTH domain 8 51 6.9E-10 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 Pfam PF11892 Domain of unknown function (DUF3412) 333 452 6.7E-57 T 11-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 Pfam PF14793 Domain of unknown function (DUF4478) 4 110 1.4E-46 T 11-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 Pfam PF03641 Possible lysine decarboxylase 190 329 3.9E-33 T 11-10-2018 IPR031100 LOG family BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 Gene3D G3DSA:3.40.50.450 124 452 3.5E-122 T 11-10-2018 BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 SUPERFAMILY SSF102405 120 330 5.34E-42 T 11-10-2018 BED32_16940 e5e533f36a88c7544dbfc38f263de62d 454 Gene3D G3DSA:3.30.1850.10 1 120 3.8E-52 T 11-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 SUPERFAMILY SSF53597 1 160 2.49E-57 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 PIRSF PIRSF000194 1 160 6.9E-58 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 Pfam PF00186 Dihydrofolate reductase 3 159 2.5E-58 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 1.1E-14 T 11-10-2018 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 1.1E-14 T 11-10-2018 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 PRINTS PR00070 Dihydrofolate reductase signature 91 105 1.1E-14 T 11-10-2018 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 1.1E-14 T 11-10-2018 BED32_18095 d445c999e5e99d22fd641fbcd4639228 160 Gene3D G3DSA:3.40.430.10 1 160 1.5E-58 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 SMART SM00862 150 226 1.9E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 SMART SM00448 1 111 5.3E-39 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 SUPERFAMILY SSF46894 127 226 1.42E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 Gene3D G3DSA:3.40.50.2300 1 117 9.0E-33 T 11-10-2018 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 Pfam PF00072 Response regulator receiver domain 3 111 4.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 Gene3D G3DSA:1.10.10.10 118 227 1.9E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 SUPERFAMILY SSF52172 1 121 8.82E-37 T 11-10-2018 IPR011006 CheY-like superfamily BED32_15370 4088ccb60fb30922f5c0a12e490648b7 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 1.2E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_18885 9be493b5e7cd58fa55b638f09b469465 338 Pfam PF00296 Luciferase-like monooxygenase 22 242 9.4E-31 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 BED32_18885 9be493b5e7cd58fa55b638f09b469465 338 Gene3D G3DSA:3.20.20.30 3 330 3.0E-96 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BED32_18885 9be493b5e7cd58fa55b638f09b469465 338 SUPERFAMILY SSF51679 8 327 2.09E-83 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 BED32_18885 9be493b5e7cd58fa55b638f09b469465 338 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 327 3.3E-134 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 BED32_06735 578f28039056bb2f05ee02f02d181dba 348 Gene3D G3DSA:3.30.1930.10 155 290 5.1E-100 T 11-10-2018 BED32_06735 578f28039056bb2f05ee02f02d181dba 348 Pfam PF03864 Phage major capsid protein E 4 346 1.4E-81 T 11-10-2018 IPR005564 Major capsid protein GpE BED32_06735 578f28039056bb2f05ee02f02d181dba 348 Gene3D G3DSA:3.15.30.10 27 337 5.1E-100 T 11-10-2018 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 Gene3D G3DSA:1.10.1020.10 55 154 6.2E-79 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 176 182 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 Gene3D G3DSA:3.40.50.150 6 236 6.2E-79 T 11-10-2018 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 TIGRFAM TIGR00571 dam: DNA adenine methylase 3 265 1.5E-87 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 8 245 1.2E-62 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 173 185 4.8E-17 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 8 24 4.8E-17 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 48 61 4.8E-17 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 29 43 4.8E-17 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 SUPERFAMILY SSF53335 1 264 2.82E-75 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_02625 33598ee2d1628f7374cc6df1d2744d92 298 PIRSF PIRSF000398 1 269 5.4E-66 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 SUPERFAMILY SSF54631 262 318 1.87E-7 T 11-10-2018 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 SUPERFAMILY SSF53697 7 256 2.16E-54 T 11-10-2018 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 SMART SM00116 272 320 0.64 T 11-10-2018 IPR000644 CBS domain BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 SMART SM00116 208 256 0.15 T 11-10-2018 IPR000644 CBS domain BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 PIRSF PIRSF004692 1 321 5.0E-118 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 Gene3D G3DSA:3.40.50.10490 2 193 1.5E-58 T 11-10-2018 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 43 311 1.7E-113 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 Gene3D G3DSA:3.10.580.10 194 318 1.7E-32 T 11-10-2018 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 Pfam PF01380 SIS domain 38 169 1.3E-30 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 Pfam PF00571 CBS domain 199 256 1.9E-6 T 11-10-2018 IPR000644 CBS domain BED32_15825 840fcddd03dced26d2ac28c94e0a89a2 321 Pfam PF00571 CBS domain 275 315 1.8E-5 T 11-10-2018 IPR000644 CBS domain BED32_03835 11358b82359eee24180e61c128baa218 126 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 51 124 1.2E-13 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_03835 11358b82359eee24180e61c128baa218 126 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 21 126 13.52 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_03835 11358b82359eee24180e61c128baa218 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 111 124 1.2E-8 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_03835 11358b82359eee24180e61c128baa218 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 56 72 1.2E-8 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_03835 11358b82359eee24180e61c128baa218 126 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 90 106 1.2E-8 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_03835 11358b82359eee24180e61c128baa218 126 Pfam PF02049 Flagellar hook-basal body complex protein FliE 48 125 3.3E-21 T 11-10-2018 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 BED32_02810 f45adbdd52ca47abd69e4442ec053652 216 Pfam PF14187 Domain of unknown function (DUF4310) 6 213 1.1E-105 T 11-10-2018 IPR025456 Protein of unknown function DUF4310 BED32_02810 f45adbdd52ca47abd69e4442ec053652 216 TIGRFAM TIGR03579 EF_0833: conserved hypothetical protein EF_0833/AHA_3914 7 215 5.2E-118 T 11-10-2018 IPR025456 Protein of unknown function DUF4310 BED32_01885 238b2593ace987d953e258571b3044ef 100 Pfam PF00276 Ribosomal protein L23 9 95 3.2E-32 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BED32_01885 238b2593ace987d953e258571b3044ef 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 11-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01885 238b2593ace987d953e258571b3044ef 100 SUPERFAMILY SSF54189 3 92 5.04E-31 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01885 238b2593ace987d953e258571b3044ef 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 23.063 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 BED32_01885 238b2593ace987d953e258571b3044ef 100 Gene3D G3DSA:3.30.70.330 1 100 1.7E-39 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 174 194 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 88 107 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 68 88 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 219 244 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 49 68 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 195 216 1.4E-66 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 174 189 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 51 244 4.8E-72 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 107 119 1.4E-10 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 47 56 1.4E-10 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 235 245 1.4E-10 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 119 133 1.4E-10 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 167 179 1.4E-10 T 11-10-2018 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 BED32_03815 8e31483e7fa3a7c97215f8b467826127 248 Pfam PF00813 FliP family 51 241 3.4E-74 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Gene3D G3DSA:3.40.50.150 16 260 2.7E-108 T 11-10-2018 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 SUPERFAMILY SSF51905 273 681 3.37E-29 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Gene3D G3DSA:3.30.9.10 358 587 5.5E-148 T 11-10-2018 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 14 677 28.044 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Gene3D G3DSA:3.50.50.60 274 679 5.5E-148 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Pfam PF01266 FAD dependent oxidoreductase 273 652 1.1E-50 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 273 682 1.1E-153 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 126 251 4.0E-48 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 BED32_14885 0c23aa04d7554af337b67b0b81491173 694 SUPERFAMILY SSF54373 495 566 2.88E-5 T 11-10-2018 BED32_02215 e28b5985cf0526a32e607e21593709d0 168 Pfam PF04345 Chorismate lyase 9 167 1.6E-32 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 BED32_02215 e28b5985cf0526a32e607e21593709d0 168 SUPERFAMILY SSF64288 8 166 3.4E-51 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_02215 e28b5985cf0526a32e607e21593709d0 168 Gene3D G3DSA:3.40.1410.10 5 166 9.2E-53 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_02215 e28b5985cf0526a32e607e21593709d0 168 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 12 166 26.257 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 1.8E-31 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 SUPERFAMILY SSF46609 1 90 5.63E-36 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 Gene3D G3DSA:2.40.500.20 94 207 5.7E-50 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PIRSF PIRSF000349 1 207 4.3E-80 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 202 1.6E-41 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 169 176 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 Gene3D G3DSA:1.10.287.990 20 90 5.8E-31 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.8E-27 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PRINTS PR01703 Manganese superoxide dismutase signature 167 179 2.8E-27 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 2.8E-27 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 2.8E-27 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 2.8E-27 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_20685 f0d35688a86eab2bebc196afbc2a7d0e 207 SUPERFAMILY SSF54719 95 206 2.36E-45 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_13680 1ae2037a9b241cf860175c77063e3b67 230 Pfam PF04239 Protein of unknown function (DUF421) 103 168 3.6E-16 T 11-10-2018 IPR007353 Protein of unknown function DUF421 BED32_13680 1ae2037a9b241cf860175c77063e3b67 230 Gene3D G3DSA:3.30.240.20 95 168 5.0E-21 T 11-10-2018 IPR023090 UPF0702, alpha/beta domain superfamily BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 SUPERFAMILY SSF82057 40 111 6.41E-29 T 11-10-2018 BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 Pfam PF03831 PhnA domain 45 111 2.6E-34 T 11-10-2018 IPR013988 PhnA protein, C-terminal BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 111 3.6E-51 T 11-10-2018 IPR004624 PhnA protein BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 Pfam PF08274 PhnA Zinc-Ribbon 3 31 1.7E-11 T 11-10-2018 IPR013987 PhnA protein, N-terminal BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 Gene3D G3DSA:2.30.30.40 42 112 1.2E-35 T 11-10-2018 BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 SUPERFAMILY SSF57783 2 33 5.44E-12 T 11-10-2018 BED32_15075 66cb046dca3236d12b7e0d78920a3bc0 112 Gene3D G3DSA:2.20.25.10 1 41 7.5E-14 T 11-10-2018 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 SMART SM00404 345 459 4.0E-17 T 11-10-2018 IPR003595 Protein-tyrosine phosphatase, catalytic BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 Pfam PF00102 Protein-tyrosine phosphatase 226 456 3.0E-25 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 Gene3D G3DSA:3.30.1570.10 1 136 1.5E-72 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 Gene3D G3DSA:3.90.190.10 187 468 2.0E-68 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 Pfam PF09013 YopH, N-terminal 3 123 3.3E-79 T 11-10-2018 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal GO:0004725|GO:0006470|GO:0009405 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 398 416 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 444 454 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 344 361 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 242 249 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 256 276 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR00700 Protein tyrosine phosphatase signature 427 442 2.4E-12 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 252 265 2.8E-42 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 399 410 2.8E-42 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 104 122 2.8E-42 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 299 315 2.8E-42 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 PRINTS PR01371 Salmonella/Yersinia modular tyrosine phosphatase signature 342 356 2.8E-42 T 11-10-2018 IPR003546 Type III secreted modular tyrosine phosphatase, SptP/YopH GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 SMART SM00194 193 463 9.5E-47 T 11-10-2018 IPR000242 PTP type protein phosphatase GO:0004725|GO:0006470 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 SUPERFAMILY SSF52799 194 457 5.31E-48 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 401 411 - T 11-10-2018 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311 BED32_00295 b7ee3a00028116540d453fbb252b12b8 468 SUPERFAMILY SSF64449 3 125 1.44E-55 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_21710 bd34db047bcee573a9e17cb195d8438a 170 Pfam PF04471 Restriction endonuclease 57 167 3.5E-16 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 BED32_21710 bd34db047bcee573a9e17cb195d8438a 170 SUPERFAMILY SSF52980 61 167 8.58E-10 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_22175 bd34db047bcee573a9e17cb195d8438a 170 Pfam PF04471 Restriction endonuclease 57 167 3.5E-16 T 11-10-2018 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 BED32_22175 bd34db047bcee573a9e17cb195d8438a 170 SUPERFAMILY SSF52980 61 167 8.58E-10 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_16925 42e15708ec055d548202eb06d2947874 110 PIRSF PIRSF006257 1 109 4.5E-42 T 11-10-2018 IPR007384 Protein of unknown function UCP006257 BED32_16925 42e15708ec055d548202eb06d2947874 110 SUPERFAMILY SSF158452 1 108 8.76E-39 T 11-10-2018 IPR036814 YqcC-like superfamily BED32_16925 42e15708ec055d548202eb06d2947874 110 Gene3D G3DSA:1.20.1440.40 1 106 1.3E-35 T 11-10-2018 IPR036814 YqcC-like superfamily BED32_16925 42e15708ec055d548202eb06d2947874 110 Pfam PF04287 tRNA pseudouridine synthase C 6 104 2.2E-35 T 11-10-2018 IPR023376 YqcC-like domain BED32_00360 7bb02625f201e4bb00a15e33a57450e1 32 Pfam PF17551 Family of unknown function (DUF5463) 1 32 1.2E-21 T 11-10-2018 IPR035181 Protein of unknown function DUF5463 BED32_00360 7bb02625f201e4bb00a15e33a57450e1 32 ProDom PD026112 PLASMID PROTEINS VIRULENCE YOP TRANSLOCATION A 1 32 4.0E-11 T 11-10-2018 IPR035181 Protein of unknown function DUF5463 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 SUPERFAMILY SSF56235 12 429 1.39E-150 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Gene3D G3DSA:3.20.20.70 430 792 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Gene3D G3DSA:3.60.20.10 12 545 0.0 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 SUPERFAMILY SSF51395 434 1188 1.18E-251 T 11-10-2018 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Pfam PF01645 Conserved region in glutamate synthase 793 1156 1.8E-157 T 11-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Gene3D G3DSA:2.160.20.60 1194 1468 6.7E-104 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Pfam PF00310 Glutamine amidotransferases class-II 12 425 2.5E-177 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 SUPERFAMILY SSF69336 1211 1465 1.96E-89 T 11-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Pfam PF01493 GXGXG motif 1236 1419 2.9E-76 T 11-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Gene3D G3DSA:3.20.20.70 483 1169 0.0 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_03050 88cf24cb53bcb60605fd5f9352124bf5 1486 Pfam PF04898 Glutamate synthase central domain 457 737 1.3E-103 T 11-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 SUPERFAMILY SSF53955 473 635 1.63E-50 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 495 523 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 Gene3D G3DSA:1.25.20.10 23 384 7.0E-118 T 11-10-2018 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 SUPERFAMILY SSF48435 23 471 1.18E-135 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 Gene3D G3DSA:1.10.1240.20 397 466 1.3E-28 T 11-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 Gene3D G3DSA:1.10.530.10 467 639 1.7E-52 T 11-10-2018 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 Pfam PF14718 Soluble lytic murein transglycosylase L domain 400 466 1.6E-25 T 11-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 BED32_18270 82f3198c78afc65ecd167324bd14de3b 639 Pfam PF01464 Transglycosylase SLT domain 478 590 3.8E-33 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_20435 ff05f2a7cf1d3f71059dbc5ad961ebbe 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 357 1.3E-179 T 11-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 BED32_20435 ff05f2a7cf1d3f71059dbc5ad961ebbe 361 Hamap MF_01002 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase [wecF]. 1 361 67.96 T 11-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 BED32_00980 ed4ed69fab774ebcf71002d459219919 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 79 101 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site BED32_00980 ed4ed69fab774ebcf71002d459219919 535 Gene3D G3DSA:3.10.105.10 292 510 9.2E-197 T 11-10-2018 BED32_00980 ed4ed69fab774ebcf71002d459219919 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 453 1.8E-107 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_00980 ed4ed69fab774ebcf71002d459219919 535 PIRSF PIRSF002741 22 534 1.8E-119 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_00980 ed4ed69fab774ebcf71002d459219919 535 Gene3D G3DSA:3.90.76.10 50 210 9.2E-197 T 11-10-2018 BED32_00980 ed4ed69fab774ebcf71002d459219919 535 Gene3D G3DSA:3.40.190.10 211 523 9.2E-197 T 11-10-2018 BED32_00980 ed4ed69fab774ebcf71002d459219919 535 SUPERFAMILY SSF53850 29 534 6.52E-162 T 11-10-2018 BED32_09280 b4095141416f96fda1017a8bb643ca11 325 PIRSF PIRSF006470 5 325 1.0E-95 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 BED32_09280 b4095141416f96fda1017a8bb643ca11 325 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 310 6.6E-71 T 11-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 BED32_09280 b4095141416f96fda1017a8bb643ca11 325 Gene3D G3DSA:3.40.190.170 28 325 2.5E-109 T 11-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily BED32_09280 b4095141416f96fda1017a8bb643ca11 325 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 34 285 1.0E-62 T 11-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.0E-21 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.4E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.4E-7 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 Gene3D G3DSA:3.40.50.2300 160 289 1.8E-72 T 11-10-2018 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 SUPERFAMILY SSF53822 60 333 5.3E-86 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 SMART SM00354 1 71 3.2E-37 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 Gene3D G3DSA:1.10.260.40 3 59 4.9E-23 T 11-10-2018 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 Gene3D G3DSA:3.40.50.2300 61 305 1.8E-72 T 11-10-2018 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 Pfam PF13377 Periplasmic binding protein-like domain 168 329 1.6E-34 T 11-10-2018 BED32_17115 6c09ea4e9e17cc4c43f55e566526d319 350 SUPERFAMILY SSF47413 1 59 9.57E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_17310 e9e17583846ecdfd526d4242353a50ee 406 Gene3D G3DSA:1.10.150.130 120 209 2.0E-6 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_17310 e9e17583846ecdfd526d4242353a50ee 406 Pfam PF00589 Phage integrase family 228 380 3.1E-9 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_17310 e9e17583846ecdfd526d4242353a50ee 406 Gene3D G3DSA:1.10.443.10 225 401 1.4E-19 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_17310 e9e17583846ecdfd526d4242353a50ee 406 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 122 198 1.7E-6 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BED32_17310 e9e17583846ecdfd526d4242353a50ee 406 SUPERFAMILY SSF56349 115 395 1.85E-34 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_19510 a4de948b8667258620bac1e847c5e315 180 Gene3D G3DSA:1.10.10.10 83 176 1.5E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_19510 a4de948b8667258620bac1e847c5e315 180 SUPERFAMILY SSF88659 93 173 7.2E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_19510 a4de948b8667258620bac1e847c5e315 180 Pfam PF08281 Sigma-70, region 4 115 166 7.9E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_19510 a4de948b8667258620bac1e847c5e315 180 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 168 1.4E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_19510 a4de948b8667258620bac1e847c5e315 180 SUPERFAMILY SSF88946 6 74 1.37E-10 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_19510 a4de948b8667258620bac1e847c5e315 180 Gene3D G3DSA:1.10.1740.10 4 74 8.2E-7 T 11-10-2018 BED32_19510 a4de948b8667258620bac1e847c5e315 180 Pfam PF04542 Sigma-70 region 2 13 77 2.6E-8 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_11880 8f321f7a4e80dcdd787d22e9b9c19eeb 108 PIRSF PIRSF037511 1 108 6.4E-36 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 BED32_11880 8f321f7a4e80dcdd787d22e9b9c19eeb 108 Pfam PF01253 Translation initiation factor SUI1 32 101 1.6E-18 T 11-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 BED32_11880 8f321f7a4e80dcdd787d22e9b9c19eeb 108 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 8 108 1.2E-37 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 BED32_11880 8f321f7a4e80dcdd787d22e9b9c19eeb 108 Gene3D G3DSA:3.30.780.10 28 108 5.4E-33 T 11-10-2018 BED32_11880 8f321f7a4e80dcdd787d22e9b9c19eeb 108 SUPERFAMILY SSF55159 4 104 5.23E-26 T 11-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Pfam PF02142 MGS-like domain 19 132 2.2E-28 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 SUPERFAMILY SSF53927 221 529 2.61E-130 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Gene3D G3DSA:3.40.140.20 218 374 1.4E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 SMART SM00851 19 132 4.4E-59 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 8 529 8.4E-262 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 460 3.7E-120 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 PIRSF PIRSF000414 1 529 6.8E-228 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 SUPERFAMILY SSF52335 7 196 2.09E-70 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Gene3D G3DSA:3.40.50.1380 1 200 8.4E-85 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 SMART SM00798 137 461 5.4E-219 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Gene3D G3DSA:3.40.140.20 392 529 6.7E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_19750 1a6e55585c30207fb30852280cff2aaa 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 529 45.604 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_06665 eef4d9dca5b29332464d8c0bbb2febff 132 SUPERFAMILY SSF55166 5 129 2.24E-17 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_06665 eef4d9dca5b29332464d8c0bbb2febff 132 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 58 129 6.3E-6 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 BED32_06665 eef4d9dca5b29332464d8c0bbb2febff 132 Gene3D G3DSA:3.30.1380.10 4 130 1.5E-13 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 SUPERFAMILY SSF57783 10 48 2.21E-11 T 11-10-2018 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 SUPERFAMILY SSF57783 58 97 8.33E-14 T 11-10-2018 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 60 96 1.3E-17 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 11 47 1.3E-14 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 104 140 2.1E-14 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 PIRSF PIRSF028063 3 51 0.15 T 11-10-2018 IPR014538 Uncharacterised conserved protein, topoisomerase zinc finger BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 PIRSF PIRSF028063 90 143 0.14 T 11-10-2018 IPR014538 Uncharacterised conserved protein, topoisomerase zinc finger BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 PIRSF PIRSF028063 42 100 0.015 T 11-10-2018 IPR014538 Uncharacterised conserved protein, topoisomerase zinc finger BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 Gene3D G3DSA:3.30.65.10 50 96 5.8E-10 T 11-10-2018 BED32_02065 cb22c047dad68f4f6e4ee660567efba7 178 Gene3D G3DSA:3.30.65.10 3 49 8.8E-8 T 11-10-2018 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 TIGRFAM TIGR00861 MIP: MIP family channel proteins 15 253 1.4E-72 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 ProSitePatterns PS00221 MIP family signature. 68 76 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 Gene3D G3DSA:1.20.1080.10 3 261 1.8E-108 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 SUPERFAMILY SSF81338 11 259 3.01E-80 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 Pfam PF00230 Major intrinsic protein 6 253 3.7E-71 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 87 106 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 236 256 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 50 74 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 11 30 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 153 171 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_00530 f1202cdd80f4711a0f32b05413a7b0ec 282 PRINTS PR00783 Major intrinsic protein family signature 186 208 6.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Pfam PF13365 Trypsin-like peptidase domain 116 252 3.2E-32 T 11-10-2018 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Gene3D G3DSA:2.30.42.10 289 388 2.5E-27 T 11-10-2018 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Pfam PF13180 PDZ domain 293 382 1.2E-14 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 SMART SM00228 398 470 1.5E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 SMART SM00228 291 373 8.3E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 40 476 7.8E-165 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 SUPERFAMILY SSF50156 273 382 1.16E-21 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 SUPERFAMILY SSF50494 1 300 2.64E-64 T 11-10-2018 IPR009003 Peptidase S1, PA clan BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Gene3D G3DSA:2.40.10.120 38 285 9.3E-84 T 11-10-2018 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 397 467 3.1E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 Gene3D G3DSA:2.30.42.10 389 478 6.3E-30 T 11-10-2018 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 SUPERFAMILY SSF50156 408 474 1.26E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 147 167 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 331 343 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 188 212 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 126 138 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_17560 a0c88d1c2bcc14a6c90b819781397e1e 478 PRINTS PR00834 HtrA/DegQ protease family signature 245 262 4.1E-60 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_06035 365afc3f2828aba611dea111a50d6545 204 Pfam PF00510 Cytochrome c oxidase subunit III 16 202 1.5E-14 T 11-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06035 365afc3f2828aba611dea111a50d6545 204 Gene3D G3DSA:1.20.120.80 19 204 3.2E-60 T 11-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06035 365afc3f2828aba611dea111a50d6545 204 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 25 204 2.2E-89 T 11-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 BED32_06035 365afc3f2828aba611dea111a50d6545 204 SUPERFAMILY SSF81452 21 202 7.85E-59 T 11-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 Gene3D G3DSA:3.50.80.20 87 186 1.9E-22 T 11-10-2018 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 52 452 1.6E-169 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 26 473 5.4E-165 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 SUPERFAMILY SSF56601 28 479 1.15E-103 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 291 313 1.9E-38 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 350 364 1.9E-38 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 429 442 1.9E-38 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 365 379 1.9E-38 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 63 82 1.9E-38 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_18985 8b46a31e6edc1a67d7c8e434e3a3f064 482 Gene3D G3DSA:3.40.710.10 249 482 2.2E-68 T 11-10-2018 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 SMART SM00448 3 113 1.2E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 139 153 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 153 169 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 181 1.5E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 SUPERFAMILY SSF52172 2 123 2.99E-24 T 11-10-2018 IPR011006 CheY-like superfamily BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 SUPERFAMILY SSF46894 125 194 1.12E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 Pfam PF00196 Bacterial regulatory proteins, luxR family 138 190 2.7E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 ProSitePatterns PS00622 LuxR-type HTH domain signature. 153 180 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 Pfam PF00072 Response regulator receiver domain 5 114 1.4E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 Gene3D G3DSA:3.40.50.12740 4 195 7.8E-50 T 11-10-2018 BED32_00960 ae98b5eed5c79f7a01a00468406a0047 196 SMART SM00421 136 193 1.9E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 Gene3D G3DSA:1.10.150.20 162 251 1.0E-28 T 11-10-2018 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 SUPERFAMILY SSF47807 160 242 9.42E-23 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 160 250 9.6E-26 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 SUPERFAMILY SSF88723 4 159 5.49E-41 T 11-10-2018 IPR029060 PIN-like domain superfamily BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 251 44.948 T 11-10-2018 IPR022895 Flap endonuclease Xni GO:0048256 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 SMART SM00475 3 250 1.3E-93 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 Gene3D G3DSA:3.40.50.1010 1 161 3.5E-59 T 11-10-2018 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 159 1.7E-32 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 BED32_16945 e7d0efa827b818c4c0ff943cf6d97de6 251 SMART SM00279 162 197 3.9E-10 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 BED32_07815 aed3b0e70fe9b10f92178caf17c34b97 142 Gene3D G3DSA:3.30.420.270 60 133 1.3E-25 T 11-10-2018 BED32_07815 aed3b0e70fe9b10f92178caf17c34b97 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 10 141 5.4E-25 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BED32_07815 aed3b0e70fe9b10f92178caf17c34b97 142 TIGRFAM TIGR02801 tolR: protein TolR 13 140 4.7E-39 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 BED32_07815 aed3b0e70fe9b10f92178caf17c34b97 142 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 6 140 28.222 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Gene3D G3DSA:3.20.20.450 604 849 4.9E-95 T 11-10-2018 IPR035919 EAL domain superfamily BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SUPERFAMILY SSF141868 606 848 4.45E-87 T 11-10-2018 IPR035919 EAL domain superfamily BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SUPERFAMILY SSF55785 299 416 1.14E-18 T 11-10-2018 IPR035965 PAS domain superfamily BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Gene3D G3DSA:3.30.450.20 294 423 8.1E-18 T 11-10-2018 BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 304 424 3.5E-13 T 11-10-2018 IPR000014 PAS domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SMART SM00267 418 590 4.3E-66 T 11-10-2018 IPR000160 GGDEF domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Pfam PF00563 EAL domain 608 837 6.9E-72 T 11-10-2018 IPR001633 EAL domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Pfam PF00990 Diguanylate cyclase, GGDEF domain 430 586 2.0E-49 T 11-10-2018 IPR000160 GGDEF domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SMART SM00052 600 842 2.3E-110 T 11-10-2018 IPR001633 EAL domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Pfam PF05228 CHASE4 domain 66 225 7.3E-20 T 11-10-2018 IPR007892 CHASE4 BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Gene3D G3DSA:3.30.70.270 424 603 4.0E-59 T 11-10-2018 BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 Pfam PF00989 PAS fold 306 415 3.6E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SMART SM00091 306 371 2.8E-7 T 11-10-2018 IPR000014 PAS domain BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 SUPERFAMILY SSF55073 434 592 4.32E-50 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_04080 a9b79ee77ba78a95b9990344eb9c9b18 854 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 425 587 4.0E-44 T 11-10-2018 IPR000160 GGDEF domain BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 101 726 43.627 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 SUPERFAMILY SSF81296 117 223 1.75E-35 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 109 723 8.6E-300 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Pfam PF00128 Alpha amylase, catalytic domain 273 347 9.0E-10 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 SUPERFAMILY SSF51011 623 724 3.69E-36 T 11-10-2018 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 SMART SM00642 247 596 3.6E-6 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 SUPERFAMILY SSF81296 16 115 1.47E-16 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 PIRSF PIRSF000463 6 726 8.5E-286 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 125 207 2.0E-24 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Gene3D G3DSA:3.20.20.80 231 612 1.8E-170 T 11-10-2018 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 SUPERFAMILY SSF51445 230 621 3.11E-112 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Gene3D G3DSA:2.60.40.10 2 221 1.6E-77 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 628 724 8.9E-23 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 BED32_01405 82d8028f58c16acd3f603731cc6cdf1c 729 Gene3D G3DSA:2.60.40.1180 623 726 1.9E-40 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta BED32_15985 51b913b8d7562abb387c20933748517e 374 PIRSF PIRSF004640 1 364 3.1E-146 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BED32_15985 51b913b8d7562abb387c20933748517e 374 Gene3D G3DSA:3.30.413.10 262 361 3.5E-22 T 11-10-2018 BED32_15985 51b913b8d7562abb387c20933748517e 374 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 352 2.9E-124 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BED32_15985 51b913b8d7562abb387c20933748517e 374 SUPERFAMILY SSF51604 23 139 3.88E-9 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_15985 51b913b8d7562abb387c20933748517e 374 Pfam PF04551 GcpE protein 14 354 2.5E-130 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BED32_15985 51b913b8d7562abb387c20933748517e 374 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 34.246 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 BED32_15985 51b913b8d7562abb387c20933748517e 374 Gene3D G3DSA:3.20.20.20 1 261 9.0E-104 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_15985 51b913b8d7562abb387c20933748517e 374 SUPERFAMILY SSF56014 265 354 4.8E-11 T 11-10-2018 BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 6 647 36.798 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 Gene3D G3DSA:1.25.40.10 24 147 6.6E-43 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 Gene3D G3DSA:1.25.40.650 148 256 5.9E-41 T 11-10-2018 BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 Pfam PF04348 LppC putative lipoprotein 40 296 4.9E-53 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 Pfam PF04348 LppC putative lipoprotein 327 647 3.6E-90 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA BED32_03090 eb9fbd939e8f2f9da7aa265bd56cf36e 653 SUPERFAMILY SSF53822 258 650 4.41E-77 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 Pfam PF00107 Zinc-binding dehydrogenase 187 310 1.8E-20 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 Gene3D G3DSA:3.90.180.10 10 343 3.9E-134 T 11-10-2018 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 SMART SM00829 10 344 4.0E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 SUPERFAMILY SSF51735 150 314 3.06E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 145 2.8E-25 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 180 207 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 Gene3D G3DSA:3.40.50.720 168 323 3.9E-134 T 11-10-2018 BED32_03175 3eec73df64d29d90a7af48ac930497f9 351 SUPERFAMILY SSF50129 16 175 3.04E-52 T 11-10-2018 IPR011032 GroES-like superfamily BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 SUPERFAMILY SSF52833 25 139 2.25E-37 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 TIGRFAM TIGR01068 thioredoxin: thioredoxin 43 138 6.7E-35 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 Gene3D G3DSA:2.20.28.140 1 34 2.0E-19 T 11-10-2018 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 Gene3D G3DSA:3.40.30.10 35 144 2.2E-34 T 11-10-2018 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 Pfam PF00085 Thioredoxin 37 137 6.8E-27 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 PIRSF PIRSF000077 35 139 8.0E-32 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 PRINTS PR00421 Thioredoxin family signature 103 114 1.0E-7 T 11-10-2018 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 PRINTS PR00421 Thioredoxin family signature 63 72 1.0E-7 T 11-10-2018 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 PRINTS PR00421 Thioredoxin family signature 55 63 1.0E-7 T 11-10-2018 BED32_05120 eeff2ea28b97016ecb8b4cbb1938c2a0 146 ProSitePatterns PS00194 Thioredoxin family active site. 56 74 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_18465 499b39f08b4f410ad001e72064f55821 361 Pfam PF01095 Pectinesterase 30 268 2.0E-34 T 11-10-2018 IPR000070 Pectinesterase, catalytic GO:0005618|GO:0030599|GO:0042545 KEGG: 00040+3.1.1.11|MetaCyc: PWY-1081|MetaCyc: PWY-7246|MetaCyc: PWY-7248 BED32_18465 499b39f08b4f410ad001e72064f55821 361 Gene3D G3DSA:2.160.20.10 41 361 8.1E-138 T 11-10-2018 IPR012334 Pectin lyase fold BED32_18465 499b39f08b4f410ad001e72064f55821 361 SUPERFAMILY SSF51126 26 356 6.7E-61 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 Hamap MF_01429 Iron-binding protein IscA [iscA]. 1 107 38.858 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 Gene3D G3DSA:2.60.300.12 2 107 8.7E-37 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 1.5E-25 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 5.6E-58 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 7.0E-37 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BED32_16060 39070d87428fcc05be3fa083a5e2ee1b 107 SUPERFAMILY SSF89360 1 95 3.66E-33 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_03070 272e3c51cd1e88f333c23de467ac78d5 241 Pfam PF00912 Transglycosylase 59 226 9.8E-51 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_03070 272e3c51cd1e88f333c23de467ac78d5 241 SUPERFAMILY SSF53955 52 231 1.72E-61 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_03070 272e3c51cd1e88f333c23de467ac78d5 241 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 10 232 39.932 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_03070 272e3c51cd1e88f333c23de467ac78d5 241 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 17 230 9.0E-84 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_03070 272e3c51cd1e88f333c23de467ac78d5 241 Gene3D G3DSA:1.10.3810.10 53 239 2.2E-53 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 11-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 SUPERFAMILY SSF81330 12 127 3.01E-35 T 11-10-2018 IPR036019 Gated mechanosensitive channel BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 Gene3D G3DSA:1.10.1200.120 3 134 8.9E-43 T 11-10-2018 IPR036019 Gated mechanosensitive channel BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 7.1E-54 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 3.6E-12 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 3.6E-12 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 3.6E-12 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 132 24.232 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 BED32_02030 dc3a3eb259376aa30fadd79b67b4b5e5 136 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 5.8E-46 T 11-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L BED32_11875 60c9768cb5825e943bd53cf5cd1da81e 70 Pfam PF05433 Glycine zipper 2TM domain 33 69 6.3E-7 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 Gene3D G3DSA:1.20.1600.10 55 474 9.6E-103 T 11-10-2018 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 SUPERFAMILY SSF56954 5 476 5.89E-86 T 11-10-2018 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 Pfam PF02321 Outer membrane efflux protein 292 472 4.4E-14 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 Pfam PF02321 Outer membrane efflux protein 64 259 1.4E-23 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 Gene3D G3DSA:2.20.200.10 100 359 9.6E-103 T 11-10-2018 BED32_05140 afdccd5fabeacf37d4696cb6bfef4f1e 488 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 474 3.1E-99 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BED32_01825 449f7b5022e8510ec229d2255fce31e7 136 Hamap MF_00390 Sulfurtransferase TusD [tusD]. 4 136 40.312 T 11-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 BED32_01825 449f7b5022e8510ec229d2255fce31e7 136 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 136 7.2E-54 T 11-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 BED32_01825 449f7b5022e8510ec229d2255fce31e7 136 Gene3D G3DSA:3.40.1260.10 1 136 5.7E-55 T 11-10-2018 IPR027396 DsrEFH-like BED32_01825 449f7b5022e8510ec229d2255fce31e7 136 Pfam PF02635 DsrE/DsrF-like family 5 136 8.3E-27 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein BED32_01825 449f7b5022e8510ec229d2255fce31e7 136 SUPERFAMILY SSF75169 1 136 2.75E-34 T 11-10-2018 IPR027396 DsrEFH-like BED32_21655 65c3d152024f4c5ed93cd8c389058f68 167 Pfam PF07876 Stress responsive A/B Barrel Domain 49 163 2.2E-21 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel BED32_21655 65c3d152024f4c5ed93cd8c389058f68 167 SUPERFAMILY SSF54909 49 163 9.12E-16 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_21655 65c3d152024f4c5ed93cd8c389058f68 167 Gene3D G3DSA:3.30.70.100 42 163 5.5E-29 T 11-10-2018 BED32_21655 65c3d152024f4c5ed93cd8c389058f68 167 SMART SM00886 49 164 6.8E-21 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel BED32_22120 65c3d152024f4c5ed93cd8c389058f68 167 Pfam PF07876 Stress responsive A/B Barrel Domain 49 163 2.2E-21 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel BED32_22120 65c3d152024f4c5ed93cd8c389058f68 167 SUPERFAMILY SSF54909 49 163 9.12E-16 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_22120 65c3d152024f4c5ed93cd8c389058f68 167 Gene3D G3DSA:3.30.70.100 42 163 5.5E-29 T 11-10-2018 BED32_22120 65c3d152024f4c5ed93cd8c389058f68 167 SMART SM00886 49 164 6.8E-21 T 11-10-2018 IPR013097 Stress responsive alpha-beta barrel BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Gene3D G3DSA:3.30.413.10 432 574 1.1E-37 T 11-10-2018 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 179 335 1.4E-44 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 437 564 1.9E-6 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 SUPERFAMILY SSF56014 435 567 1.7E-36 T 11-10-2018 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 PRINTS PR00397 Sirohaem Fe-binding site signature 436 454 4.1E-8 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 PRINTS PR00397 Sirohaem Fe-binding site signature 484 502 4.1E-8 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 484 500 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 SUPERFAMILY SSF55124 20 148 1.24E-25 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 16 577 58.238 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 25 565 1.1E-287 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Gene3D G3DSA:3.90.480.20 23 423 9.4E-88 T 11-10-2018 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 SUPERFAMILY SSF56014 156 350 8.77E-57 T 11-10-2018 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 86 145 6.2E-13 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 359 423 1.0E-14 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 SUPERFAMILY SSF55124 352 428 1.01E-21 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 BED32_04560 2d5497f2dd0f0aae236afb11d98abf60 582 Gene3D G3DSA:3.30.413.10 147 354 9.4E-88 T 11-10-2018 BED32_20970 25b2b087c495ee0e08f96fa412a570da 425 Gene3D G3DSA:3.40.50.2000 217 403 6.1E-67 T 11-10-2018 BED32_20970 25b2b087c495ee0e08f96fa412a570da 425 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 33 211 7.3E-67 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 BED32_20970 25b2b087c495ee0e08f96fa412a570da 425 Gene3D G3DSA:3.40.50.11720 41 209 1.8E-47 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 BED32_20970 25b2b087c495ee0e08f96fa412a570da 425 Pfam PF00534 Glycosyl transferases group 1 248 398 7.3E-11 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_20970 25b2b087c495ee0e08f96fa412a570da 425 SUPERFAMILY SSF53756 57 420 9.94E-17 T 11-10-2018 BED32_18685 b6a682846c436f9669e1273ca120f014 349 Gene3D G3DSA:1.10.3720.10 101 345 2.2E-27 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18685 b6a682846c436f9669e1273ca120f014 349 SUPERFAMILY SSF161098 106 337 1.44E-21 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18685 b6a682846c436f9669e1273ca120f014 349 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 349 4.1E-42 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_10770 c3d41040b8ca05e4380edb1c225cb255 349 Pfam PF00793 DAHP synthetase I family 41 337 2.2E-101 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_10770 c3d41040b8ca05e4380edb1c225cb255 349 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 5 348 1.4E-167 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_10770 c3d41040b8ca05e4380edb1c225cb255 349 SUPERFAMILY SSF51569 7 346 3.14E-130 T 11-10-2018 BED32_10770 c3d41040b8ca05e4380edb1c225cb255 349 PIRSF PIRSF001361 1 349 9.1E-156 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_10770 c3d41040b8ca05e4380edb1c225cb255 349 Gene3D G3DSA:3.20.20.70 1 348 1.5E-153 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_00320 d16c4a48d7c24f5c47ff23b3527d6368 115 TIGRFAM TIGR02497 yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain 77 112 1.7E-16 T 11-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 BED32_00320 d16c4a48d7c24f5c47ff23b3527d6368 115 Pfam PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI 29 113 1.2E-20 T 11-10-2018 IPR012670 Type III secretion system, YscI/HrpB GO:0009306 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 482 6.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 PRINTS PR00344 Bacterial sensor protein C-terminal signature 486 496 6.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 515 6.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 6.0E-10 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 433 536 2.8E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 SUPERFAMILY SSF55785 220 321 5.14E-6 T 11-10-2018 IPR035965 PAS domain superfamily BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 SUPERFAMILY SSF55874 407 534 2.51E-26 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Pfam PF17203 Single cache domain 3 43 178 6.0E-21 T 11-10-2018 IPR033463 Single cache domain 3 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Pfam PF00989 PAS fold 222 322 3.1E-8 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 SMART SM00387 429 537 3.4E-19 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Gene3D G3DSA:3.30.450.20 40 180 2.3E-39 T 11-10-2018 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 334 383 4.7E-11 T 11-10-2018 IPR039506 SpoOB, alpha-helical domain BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Gene3D G3DSA:3.30.565.10 385 532 2.1E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 Gene3D G3DSA:3.30.450.20 207 324 1.7E-23 T 11-10-2018 BED32_12500 b916b018dac20ee7cc2eecffb3c180b2 558 SUPERFAMILY SSF103190 46 177 6.28E-37 T 11-10-2018 IPR029151 Periplasmic sensor-like domain superfamily BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 Pfam PF03772 Competence protein 207 474 1.6E-53 T 11-10-2018 IPR004477 ComEC/Rec2-related protein BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 228 411 1.1E-37 T 11-10-2018 IPR004477 ComEC/Rec2-related protein BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 71 725 2.6E-178 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 SUPERFAMILY SSF56281 502 749 2.1E-46 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 SMART SM00849 512 696 6.1E-11 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 Pfam PF13567 Domain of unknown function (DUF4131) 32 160 1.1E-8 T 11-10-2018 IPR025405 Domain of unknown function DUF4131 BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 Gene3D G3DSA:3.60.15.10 501 738 6.2E-48 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_13650 b53da98a4ea50687788ab476ea88c11c 761 Pfam PF00753 Metallo-beta-lactamase superfamily 512 687 6.2E-19 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_17825 0803c3cbf5644149920e06f15f303032 68 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 18.179 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 BED32_17825 0803c3cbf5644149920e06f15f303032 68 Pfam PF03884 DNA gyrase inhibitor YacG 8 58 4.8E-24 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 BED32_17825 0803c3cbf5644149920e06f15f303032 68 Gene3D G3DSA:3.30.50.10 2 65 2.2E-25 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 BED32_17825 0803c3cbf5644149920e06f15f303032 68 SUPERFAMILY SSF57716 6 63 3.99E-21 T 11-10-2018 BED32_20165 066750da2793fef47364c6690ae46632 130 Pfam PF12568 Acetyltransferase (GNAT) domain 2 129 7.8E-54 T 11-10-2018 IPR000182 GNAT domain BED32_20165 066750da2793fef47364c6690ae46632 130 Gene3D G3DSA:3.40.630.30 1 130 1.7E-41 T 11-10-2018 BED32_20165 066750da2793fef47364c6690ae46632 130 SUPERFAMILY SSF55729 9 123 4.46E-12 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_20165 066750da2793fef47364c6690ae46632 130 Hamap MF_02018 PanD regulatory factor [panZ]. 1 130 34.056 T 11-10-2018 IPR032900 PanD regulatory factor PanZ GO:0015940|GO:0031638 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Gene3D G3DSA:1.10.10.10 502 561 2.7E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF46785 431 498 3.26E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 622 1.6E-210 T 11-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Pfam PF00009 Elongation factor Tu GTP binding domain 2 166 4.5E-32 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Pfam PF09106 Elongation factor SelB, winged helix 440 495 3.1E-16 T 11-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF46785 503 560 9.08E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Gene3D G3DSA:2.40.30.10 176 289 2.4E-24 T 11-10-2018 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF46785 565 622 7.49E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Gene3D G3DSA:3.40.50.300 1 173 3.8E-45 T 11-10-2018 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF52540 2 167 2.38E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 PRINTS PR00315 GTP-binding elongation factor signature 54 64 1.3E-7 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 PRINTS PR00315 GTP-binding elongation factor signature 2 15 1.3E-7 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 PRINTS PR00315 GTP-binding elongation factor signature 107 116 1.3E-7 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 PRINTS PR00315 GTP-binding elongation factor signature 70 81 1.3E-7 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Gene3D G3DSA:1.10.10.10 562 622 1.3E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF50465 279 364 2.05E-5 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 26 41 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 Pfam PF09107 Elongation factor SelB, winged helix 575 620 5.9E-20 T 11-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 BED32_20645 a21e72651a395fbb46f4e2eed69900e6 630 SUPERFAMILY SSF50447 180 299 3.95E-25 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_08810 b198f7358870532383cd7323cab93c8c 312 Pfam PF02653 Branched-chain amino acid transport system / permease component 27 297 6.9E-42 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 273 1.6E-101 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 Gene3D G3DSA:3.10.310.10 3 270 5.5E-106 T 11-10-2018 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 Pfam PF01678 Diaminopimelate epimerase 3 123 1.4E-33 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 Pfam PF01678 Diaminopimelate epimerase 152 267 1.7E-31 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 SUPERFAMILY SSF54506 2 273 4.82E-53 T 11-10-2018 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 39.102 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 BED32_20350 07b0e2de73a10486b64aabacefcc3ce5 274 Gene3D G3DSA:3.10.310.10 115 261 5.5E-106 T 11-10-2018 BED32_12450 86c5398cec1e9aea1d6ca31a14c01928 467 Pfam PF04945 YHS domain 408 454 1.7E-17 T 11-10-2018 IPR007029 YHS domain BED32_12450 86c5398cec1e9aea1d6ca31a14c01928 467 Pfam PF10080 Predicted membrane protein (DUF2318) 297 400 5.1E-29 T 11-10-2018 IPR018758 Domain of unknown function DUF2318, membrane BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 74 3.1E-16 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 206 2.5E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 SUPERFAMILY SSF47616 84 215 5.29E-23 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 Gene3D G3DSA:1.20.1050.10 86 212 6.8E-27 T 11-10-2018 BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 Gene3D G3DSA:3.40.30.10 1 83 1.0E-36 T 11-10-2018 BED32_02315 d5fb1b88cd33cfd26d27a8a30e2814a4 223 SUPERFAMILY SSF52833 3 78 3.83E-21 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_06715 c6986fcd0ddc5833210d624fa9cefb5e 527 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 16 505 8.0E-78 T 11-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 BED32_06715 c6986fcd0ddc5833210d624fa9cefb5e 527 Pfam PF05136 Phage portal protein, lambda family 18 395 7.1E-115 T 11-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 Gene3D G3DSA:3.20.70.20 60 127 2.3E-25 T 11-10-2018 BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 127 43.282 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 127 1.2E-72 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 Pfam PF01228 Glycine radical 14 108 1.6E-23 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 SUPERFAMILY SSF51998 27 125 7.78E-25 T 11-10-2018 BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 ProSitePatterns PS00850 Glycine radical domain signature. 97 105 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site BED32_16325 df36712b86b3acb7367d5e26c9f1e340 127 PIRSF PIRSF000378 2 127 3.5E-55 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 SUPERFAMILY SSF54631 275 396 7.45E-14 T 11-10-2018 BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 ProSitePatterns PS00211 ABC transporters family signature. 165 179 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 Pfam PF00571 CBS domain 346 393 2.4E-6 T 11-10-2018 IPR000644 CBS domain BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 SUPERFAMILY SSF52540 43 271 2.49E-75 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 37 394 2.3E-176 T 11-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 Gene3D G3DSA:3.10.580.10 295 395 5.2E-10 T 11-10-2018 BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 SMART SM00382 53 242 9.4E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 Pfam PF00005 ABC transporter 44 192 1.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_16620 9e5b89f5586713bf58e778bddd48dcad 399 Gene3D G3DSA:3.40.50.300 34 287 9.4E-79 T 11-10-2018 BED32_20105 45a8e1186a31b24ccfef026b1aa6f54a 441 Gene3D G3DSA:3.40.190.10 147 425 6.1E-165 T 11-10-2018 BED32_20105 45a8e1186a31b24ccfef026b1aa6f54a 441 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 142 159 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 BED32_20105 45a8e1186a31b24ccfef026b1aa6f54a 441 SUPERFAMILY SSF53850 27 426 1.14E-73 T 11-10-2018 BED32_20105 45a8e1186a31b24ccfef026b1aa6f54a 441 Pfam PF13416 Bacterial extracellular solute-binding protein 46 369 3.0E-42 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_20105 45a8e1186a31b24ccfef026b1aa6f54a 441 Gene3D G3DSA:3.40.190.10 31 385 6.1E-165 T 11-10-2018 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 Gene3D G3DSA:1.20.1440.230 343 443 7.4E-27 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 SUPERFAMILY SSF142984 257 339 6.15E-22 T 11-10-2018 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 SMART SM00928 345 390 1.2E-19 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 Gene3D G3DSA:3.10.20.600 248 342 2.0E-28 T 11-10-2018 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 358 369 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 181 196 - T 11-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 SUPERFAMILY SSF140490 343 435 2.22E-30 T 11-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 348 430 1.9E-25 T 11-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 61 233 3.2E-50 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 Gene3D G3DSA:3.40.50.11540 66 245 2.0E-78 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 SUPERFAMILY SSF142019 23 252 1.96E-84 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14590 3731644a6600f874efe821b45af3f6bf 455 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 20 432 3.9E-199 T 11-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 Hamap MF_00020 Acetate kinase [ackA]. 1 400 186.928 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 SUPERFAMILY SSF53067 4 199 2.85E-62 T 11-10-2018 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 380 392 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 6 17 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 325 341 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 206 227 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 302 315 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PRINTS PR00471 Acetate kinase family signature 176 189 1.8E-48 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 SUPERFAMILY SSF53067 160 398 2.85E-84 T 11-10-2018 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 PIRSF PIRSF000722 2 400 9.8E-143 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 206 223 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 Gene3D G3DSA:3.30.420.40 3 198 1.6E-77 T 11-10-2018 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 TIGRFAM TIGR00016 ackA: acetate kinase 1 399 8.1E-183 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 Pfam PF00871 Acetokinase family 6 393 1.3E-173 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 Gene3D G3DSA:3.30.420.40 199 400 5.7E-86 T 11-10-2018 BED32_14655 90799d8595f6fdcbd96e54d2958f079e 400 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Gene3D G3DSA:3.40.50.720 233 366 4.1E-36 T 11-10-2018 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 SUPERFAMILY SSF116726 391 440 5.36E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Gene3D G3DSA:3.30.70.1450 367 458 1.3E-29 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Pfam PF02080 TrkA-C domain 391 451 1.4E-10 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Pfam PF02080 TrkA-C domain 156 225 7.2E-12 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 SUPERFAMILY SSF116726 148 226 3.66E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Pfam PF02254 TrkA-N domain 235 350 9.0E-25 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Pfam PF02254 TrkA-N domain 3 124 1.0E-29 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Gene3D G3DSA:3.30.70.1450 140 232 3.5E-22 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 Gene3D G3DSA:3.40.50.720 2 139 1.2E-49 T 11-10-2018 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 5.2E-35 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 5.2E-35 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 5.2E-35 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 5.2E-35 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 5.2E-35 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 SUPERFAMILY SSF51735 232 376 5.21E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_02035 4a568e96f577c226a8958ad856fcbfdd 458 SUPERFAMILY SSF51735 1 152 1.22E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 168 186 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 92 108 4.7E-22 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 4.7E-22 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 162 174 4.7E-22 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 PRINTS PR00599 Methionine aminopeptidase-1 signature 193 205 4.7E-22 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 Gene3D G3DSA:3.90.230.10 2 254 9.9E-106 T 11-10-2018 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 Pfam PF00557 Metallopeptidase family M24 14 242 3.2E-52 T 11-10-2018 IPR000994 Peptidase M24 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 SUPERFAMILY SSF55920 6 255 3.14E-89 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 Hamap MF_01974 Methionine aminopeptidase [map]. 4 251 39.365 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_04185 75ddc3b207a039cf74d4acff78ac9b61 261 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 5 249 5.0E-90 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 Pfam PF00535 Glycosyl transferase family 2 281 450 6.6E-33 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 SUPERFAMILY SSF141371 699 786 3.92E-6 T 11-10-2018 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 Pfam PF07238 PilZ domain 697 793 5.2E-9 T 11-10-2018 IPR009875 PilZ domain GO:0035438 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 285 304 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 527 553 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 202 222 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 366 390 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 230 255 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 670 691 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 556 575 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 PRINTS PR01439 Cellulose synthase subunit A signature 596 615 4.4E-58 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 SUPERFAMILY SSF53448 278 553 9.38E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 Gene3D G3DSA:3.90.550.10 265 486 2.1E-79 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 Gene3D G3DSA:2.40.10.220 693 802 1.7E-12 T 11-10-2018 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 Pfam PF03552 Cellulose synthase 454 574 3.1E-12 T 11-10-2018 IPR005150 Cellulose synthase GO:0016020|GO:0016760|GO:0030244 BED32_01030 ec85735a3c27cd8480853d0c67d1708b 875 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 150 832 8.0E-288 T 11-10-2018 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 41.151 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 6.2E-174 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 SMART SM00937 63 178 5.5E-72 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 SUPERFAMILY SSF75620 12 353 6.67E-137 T 11-10-2018 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Pfam PF03462 PCRF domain 12 203 7.0E-76 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Gene3D G3DSA:1.20.58.410 2 101 4.1E-6 T 11-10-2018 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Gene3D G3DSA:3.30.70.1660 111 342 2.2E-94 T 11-10-2018 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Gene3D G3DSA:3.30.160.20 210 297 2.2E-94 T 11-10-2018 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 228 244 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_09815 35cea9e4744c40c9ff6735557cabbda7 360 Pfam PF00472 RF-1 domain 216 321 8.3E-41 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 Gene3D G3DSA:3.40.50.1100 103 401 3.4E-141 T 11-10-2018 BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 Gene3D G3DSA:3.40.50.1100 85 394 3.4E-141 T 11-10-2018 BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 SUPERFAMILY SSF53686 1 426 1.02E-132 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 Gene3D G3DSA:3.90.1380.10 1 81 1.9E-33 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 96 370 5.2E-24 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 TIGRFAM TIGR00260 thrC: threonine synthase 52 396 1.4E-119 T 11-10-2018 IPR004450 Threonine synthase-like BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 97 111 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BED32_18220 20e16b30c157a8ea0a5aca59068c1461 429 Pfam PF14821 Threonine synthase N terminus 8 80 1.1E-10 T 11-10-2018 IPR029144 Threonine synthase, N-terminal BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 22 141 2.0E-40 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 Gene3D G3DSA:1.20.1300.10 16 144 1.5E-47 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 99 112 - T 11-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 21 138 4.1E-29 T 11-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 PIRSF PIRSF000178 7 144 3.1E-33 T 11-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 24 48 - T 11-10-2018 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07740 2c500ddac1a02516d158ac74a7ec81d0 144 SUPERFAMILY SSF81343 18 144 6.38E-34 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07370 709a3add025c024dde5716e1680c4560 127 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 19.089 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_07370 709a3add025c024dde5716e1680c4560 127 TIGRFAM TIGR00494 crcB: protein CrcB 6 120 1.7E-36 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_07370 709a3add025c024dde5716e1680c4560 127 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 6 116 2.3E-24 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.334 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 SUPERFAMILY SSF50249 2 125 1.1E-50 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:4.10.950.10 196 273 5.2E-37 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 PIRSF PIRSF002158 12 274 2.8E-100 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 3.9E-34 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 SMART SM01382 124 251 4.1E-90 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.1E-131 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:2.40.50.140 1 114 4.6E-51 T 11-10-2018 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 3.0E-55 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 Gene3D G3DSA:2.30.30.30 115 195 4.3E-33 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 SMART SM01383 42 118 3.6E-48 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01890 6217cbf14a2732c102ed6fdcb7193770 274 SUPERFAMILY SSF50104 127 269 1.08E-59 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 TIGRFAM TIGR01298 RNaseT: ribonuclease T 21 219 4.6E-106 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 Hamap MF_00157 Ribonuclease T [rnt]. 1 232 119.759 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 SMART SM00479 29 214 3.2E-40 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 SUPERFAMILY SSF53098 20 218 3.47E-58 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 Gene3D G3DSA:3.30.420.10 20 225 9.1E-59 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_10905 12cae82fc897d416a7661e0d17c07cad 232 Pfam PF00929 Exonuclease 31 205 1.3E-37 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 Gene3D G3DSA:3.30.70.260 1 80 1.2E-34 T 11-10-2018 BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 Gene3D G3DSA:3.30.70.1150 81 158 5.7E-27 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 Pfam PF10369 Small subunit of acetolactate synthase 85 159 1.4E-23 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 SUPERFAMILY SSF55021 3 75 1.16E-21 T 11-10-2018 BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 Pfam PF01842 ACT domain 5 69 7.1E-15 T 11-10-2018 IPR002912 ACT domain BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 77 8.0E-37 T 11-10-2018 BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 SUPERFAMILY SSF55021 80 163 4.43E-25 T 11-10-2018 BED32_17940 b8926b51cce76f3ffa73000e1ed2ba06 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 3 160 4.0E-66 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_08635 6da9d5fd20076448129e39829cde73d5 307 Gene3D G3DSA:3.90.550.10 1 223 5.3E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08635 6da9d5fd20076448129e39829cde73d5 307 SUPERFAMILY SSF53448 6 289 1.04E-36 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08635 6da9d5fd20076448129e39829cde73d5 307 TIGRFAM TIGR01556 rhamnosyltran: rhamnosyltransferase 13 298 9.0E-131 T 11-10-2018 IPR006446 Rhamnosyltransferase BED32_08635 6da9d5fd20076448129e39829cde73d5 307 Pfam PF00535 Glycosyl transferase family 2 9 179 2.0E-15 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_13445 a7b95995c256993dd7a577708107001e 684 Pfam PF00580 UvrD/REP helicase N-terminal domain 197 490 1.3E-40 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 BED32_13445 a7b95995c256993dd7a577708107001e 684 Gene3D G3DSA:3.40.50.300 500 676 8.8E-26 T 11-10-2018 BED32_13445 a7b95995c256993dd7a577708107001e 684 Pfam PF12462 DNA helicase IV / RNA helicase N terminal 1 164 5.2E-65 T 11-10-2018 IPR022161 DNA helicase IV, N-terminal domain BED32_13445 a7b95995c256993dd7a577708107001e 684 Pfam PF13361 UvrD-like helicase C-terminal domain 544 659 3.0E-14 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 BED32_13445 a7b95995c256993dd7a577708107001e 684 Gene3D G3DSA:3.40.50.300 345 499 5.3E-22 T 11-10-2018 BED32_13445 a7b95995c256993dd7a577708107001e 684 Gene3D G3DSA:3.40.50.300 189 335 4.4E-29 T 11-10-2018 BED32_13445 a7b95995c256993dd7a577708107001e 684 SUPERFAMILY SSF52540 195 675 1.08E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19315 a55b9841b2bf1d6b9e20d0db396b0522 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 9.2E-33 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BED32_19315 a55b9841b2bf1d6b9e20d0db396b0522 104 SUPERFAMILY SSF103481 5 103 3.14E-21 T 11-10-2018 BED32_19315 a55b9841b2bf1d6b9e20d0db396b0522 104 Gene3D G3DSA:1.10.3730.20 1 104 2.4E-33 T 11-10-2018 BED32_00415 6712c1bf3eb4a2269f8598db9d0a8ab0 293 Pfam PF07201 HrpJ-like domain 60 223 3.8E-38 T 11-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 BED32_00415 6712c1bf3eb4a2269f8598db9d0a8ab0 293 SUPERFAMILY SSF140591 74 268 2.75E-53 T 11-10-2018 BED32_00415 6712c1bf3eb4a2269f8598db9d0a8ab0 293 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 36 280 1.1E-42 T 11-10-2018 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 Pfam PF00455 DeoR C terminal sensor domain 64 220 8.6E-54 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_01445 8727f049ecb431d752e76dd2954fc323 240 SUPERFAMILY SSF100950 62 222 9.14E-30 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_01445 8727f049ecb431d752e76dd2954fc323 240 SMART SM00420 1 46 2.2E-18 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 Gene3D G3DSA:3.30.750.70 58 121 3.6E-10 T 11-10-2018 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 Pfam PF08220 DeoR-like helix-turn-helix domain 1 49 8.5E-21 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 SMART SM01134 60 221 2.1E-71 T 11-10-2018 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 SUPERFAMILY SSF46785 3 61 6.94E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01445 8727f049ecb431d752e76dd2954fc323 240 Gene3D G3DSA:1.10.10.10 1 46 8.4E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01445 8727f049ecb431d752e76dd2954fc323 240 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 12 26 5.3E-12 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_01445 8727f049ecb431d752e76dd2954fc323 240 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 44 5.3E-12 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_05540 cdb4cf5d88dfa29bae947487d5d6afe4 586 Pfam PF01464 Transglycosylase SLT domain 399 503 1.1E-20 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_05540 cdb4cf5d88dfa29bae947487d5d6afe4 586 Gene3D G3DSA:1.10.530.10 397 537 4.4E-26 T 11-10-2018 BED32_05540 cdb4cf5d88dfa29bae947487d5d6afe4 586 SUPERFAMILY SSF53955 407 523 1.97E-25 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_02560 d9685822ed833cc6a20fa363f471a7fd 67 Pfam PF07869 Protein of unknown function (DUF1656) 7 61 1.1E-20 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 BED32_02560 d9685822ed833cc6a20fa363f471a7fd 67 Hamap MF_01546 Protein AaeX [aaeX]. 1 67 23.173 T 11-10-2018 IPR012451 Protein of unknown function DUF1656 BED32_00190 7e86503a099ef8f62dc409fd25c4fe18 150 Pfam PF00196 Bacterial regulatory proteins, luxR family 66 114 6.8E-7 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_00190 7e86503a099ef8f62dc409fd25c4fe18 150 SUPERFAMILY SSF46894 55 118 6.12E-8 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_00190 7e86503a099ef8f62dc409fd25c4fe18 150 Gene3D G3DSA:1.10.10.10 31 123 3.9E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01625 3c93cdb6ecf044a970723a956086008e 362 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 357 74.522 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 SUPERFAMILY SSF56796 4 357 1.83E-115 T 11-10-2018 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 355 1.2E-120 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 Gene3D G3DSA:1.20.1090.10 173 361 6.9E-65 T 11-10-2018 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 Pfam PF01761 3-dehydroquinate synthase 67 326 9.3E-109 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 Gene3D G3DSA:3.40.50.1970 1 172 4.2E-64 T 11-10-2018 BED32_01625 3c93cdb6ecf044a970723a956086008e 362 PIRSF PIRSF001455 11 359 9.1E-106 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 1 118 26.189 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 Pfam PF02313 Fumarate reductase subunit D 5 116 2.6E-49 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 PIRSF PIRSF000179 1 118 1.9E-49 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 Gene3D G3DSA:1.20.1300.10 1 118 4.2E-50 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 3 118 3.0E-46 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 BED32_19305 b80bc5e69c108d2ffbae866c1c817f4f 118 SUPERFAMILY SSF81343 1 118 1.79E-50 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07230 1018c68109548a5f0289df7df11a1ebd 365 Gene3D G3DSA:1.10.3290.10 48 278 1.4E-29 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_07230 1018c68109548a5f0289df7df11a1ebd 365 Pfam PF13784 Fic/DOC family N-terminal 27 107 1.6E-21 T 11-10-2018 IPR025758 Fic/DOC N-terminal BED32_07230 1018c68109548a5f0289df7df11a1ebd 365 SUPERFAMILY SSF140931 93 277 1.03E-25 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_07230 1018c68109548a5f0289df7df11a1ebd 365 PIRSF PIRSF038925 1 357 1.2E-104 T 11-10-2018 IPR026287 Adenosine monophosphate-protein transferase BED32_07230 1018c68109548a5f0289df7df11a1ebd 365 Pfam PF02661 Fic/DOC family 146 212 1.8E-13 T 11-10-2018 IPR003812 Fido domain BED32_01060 75d192689d1314507f205c052c907b53 234 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 14 234 3.4E-79 T 11-10-2018 IPR009331 Oligogalacturonate-specific porin BED32_01060 75d192689d1314507f205c052c907b53 234 Gene3D G3DSA:2.40.160.40 21 234 9.8E-76 T 11-10-2018 BED32_01060 75d192689d1314507f205c052c907b53 234 SUPERFAMILY SSF56935 66 234 4.88E-11 T 11-10-2018 BED32_11290 2e6d92b8cbfefbf83101a6d6833b7674 262 Pfam PF05013 N-formylglutamate amidohydrolase 27 234 2.5E-41 T 11-10-2018 IPR007709 N-formylglutamate amidohydrolase BED32_11290 2e6d92b8cbfefbf83101a6d6833b7674 262 PIRSF PIRSF029730 5 262 4.5E-86 T 11-10-2018 IPR011227 Uncharacterised conserved protein UCP029730 BED32_11290 2e6d92b8cbfefbf83101a6d6833b7674 262 Gene3D G3DSA:3.40.630.40 17 259 5.3E-78 T 11-10-2018 BED32_11290 2e6d92b8cbfefbf83101a6d6833b7674 262 SUPERFAMILY SSF53187 14 256 3.98E-70 T 11-10-2018 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 SUPERFAMILY SSF47144 78 171 6.54E-25 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 SUPERFAMILY SSF46565 1 74 2.36E-18 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 Gene3D G3DSA:1.20.1280.20 80 171 1.1E-24 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 SMART SM00271 1 66 1.9E-10 T 11-10-2018 IPR001623 DnaJ domain BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 Pfam PF07743 HSCB C-terminal oligomerisation domain 88 163 3.8E-16 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 9.5E-52 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 Pfam PF00226 DnaJ domain 2 70 5.5E-7 T 11-10-2018 IPR001623 DnaJ domain BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 25.456 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 BED32_16055 a28617ee7b375275f2c0ada02a102d63 175 Gene3D G3DSA:1.10.287.110 1 79 2.7E-24 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_13695 5e558775aef490bcc372b44295e38cbb 271 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 154 164 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site BED32_13695 5e558775aef490bcc372b44295e38cbb 271 Pfam PF01226 Formate/nitrite transporter 2 262 1.4E-75 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BED32_13695 5e558775aef490bcc372b44295e38cbb 271 Gene3D G3DSA:1.20.1080.10 15 271 7.2E-100 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_13695 5e558775aef490bcc372b44295e38cbb 271 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 12 266 2.5E-93 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BED32_13695 5e558775aef490bcc372b44295e38cbb 271 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 69 78 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site BED32_13695 5e558775aef490bcc372b44295e38cbb 271 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 1 265 1.3E-129 T 11-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 BED32_14460 513cc018b208f81d250be54587bb2130 480 Pfam PF06628 Catalase-related immune-responsive 416 477 2.3E-21 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 SUPERFAMILY SSF56634 4 479 3.53E-210 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PIRSF PIRSF038928 1 480 2.4E-221 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 Pfam PF00199 Catalase 9 389 2.5E-187 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 290 317 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 106 123 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 22 45 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 125 143 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 322 348 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 PRINTS PR00067 Catalase signature 85 103 1.2E-70 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 SMART SM01060 9 393 7.3E-281 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 ProSitePatterns PS00438 Catalase proximal active site signature. 45 61 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 BED32_14460 513cc018b208f81d250be54587bb2130 480 Gene3D G3DSA:2.40.180.10 3 480 1.2E-232 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 BED32_15105 e32f25d53f6e41272c1343584c178704 192 Pfam PF04264 YceI-like domain 26 187 4.2E-40 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BED32_15105 e32f25d53f6e41272c1343584c178704 192 SUPERFAMILY SSF101874 23 191 2.62E-55 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BED32_15105 e32f25d53f6e41272c1343584c178704 192 SMART SM00867 25 189 5.2E-70 T 11-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like BED32_15105 e32f25d53f6e41272c1343584c178704 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 44.552 T 11-10-2018 IPR023480 Uncharacterised protein family UPF0312/YceI BED32_15105 e32f25d53f6e41272c1343584c178704 192 Gene3D G3DSA:2.40.128.110 24 192 4.1E-55 T 11-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily BED32_16200 7f1f6f5ec0d14e3ae4b501556527b5d3 227 Gene3D G3DSA:3.40.50.1000 25 225 2.2E-13 T 11-10-2018 IPR023214 HAD superfamily BED32_16200 7f1f6f5ec0d14e3ae4b501556527b5d3 227 Gene3D G3DSA:1.20.1440.100 36 109 2.2E-13 T 11-10-2018 BED32_16200 7f1f6f5ec0d14e3ae4b501556527b5d3 227 Pfam PF12710 haloacid dehalogenase-like hydrolase 25 208 3.9E-13 T 11-10-2018 BED32_16200 7f1f6f5ec0d14e3ae4b501556527b5d3 227 SUPERFAMILY SSF56784 22 212 5.06E-10 T 11-10-2018 IPR036412 HAD-like superfamily BED32_16200 7f1f6f5ec0d14e3ae4b501556527b5d3 227 TIGRFAM TIGR01545 YfhB_g-proteo: HAD hydrolase, family IF 19 227 9.5E-127 T 11-10-2018 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 Gene3D G3DSA:3.40.50.300 16 296 9.0E-106 T 11-10-2018 BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 SUPERFAMILY SSF52540 13 157 5.0E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 Gene3D G3DSA:1.10.20.140 119 190 9.0E-106 T 11-10-2018 BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 12 312 29.866 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 Pfam PF01715 IPP transferase 46 289 7.1E-86 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BED32_19225 3c4e1db810380b8188b3288ac22d550d 313 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 12 299 1.9E-120 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 Gene3D G3DSA:2.70.98.90 56 332 3.4E-109 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 66 87 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 158 178 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 414 437 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 323 343 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 498 521 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 250 265 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 461 483 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR00701 60kDa inner membrane protein signature 217 235 1.1E-105 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 Pfam PF02096 60Kd inner membrane protein 353 532 2.9E-60 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 351 5.5E-119 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR01900 YidC translocation/secretion protein signature 467 482 1.5E-29 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR01900 YidC translocation/secretion protein signature 487 511 1.5E-29 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 PRINTS PR01900 YidC translocation/secretion protein signature 338 354 1.5E-29 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 352 532 1.8E-69 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 Pfam PF14849 YidC periplasmic domain 61 342 1.6E-89 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain BED32_21590 b8bf6d7dc6ebb31a6f14890833c08089 548 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 534 26.538 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 BED32_16930 34079fa99952e3709316205ae347fd97 183 Hamap MF_01104 Protein Syd [syd]. 3 181 36.179 T 11-10-2018 IPR009948 Syd GO:0009898 BED32_16930 34079fa99952e3709316205ae347fd97 183 Gene3D G3DSA:3.40.1580.20 1 181 2.4E-67 T 11-10-2018 IPR038228 Syd superfamily BED32_16930 34079fa99952e3709316205ae347fd97 183 Pfam PF07348 Syd protein (SUKH-2) 7 179 4.7E-71 T 11-10-2018 IPR009948 Syd GO:0009898 BED32_11650 91023a350920314aec68016a75c597bd 541 Pfam PF09979 Uncharacterized protein conserved in bacteria (DUF2213) 167 285 2.5E-5 T 11-10-2018 IPR016913 Uncharacterised conserved protein UCP029215 BED32_11650 91023a350920314aec68016a75c597bd 541 Pfam PF00293 NUDIX domain 14 120 1.9E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_11650 91023a350920314aec68016a75c597bd 541 SUPERFAMILY SSF55811 13 119 3.79E-24 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_11650 91023a350920314aec68016a75c597bd 541 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_11650 91023a350920314aec68016a75c597bd 541 Gene3D G3DSA:3.90.79.10 4 127 1.1E-21 T 11-10-2018 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 SUPERFAMILY SSF52540 96 381 2.22E-95 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.136 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Gene3D G3DSA:3.40.50.300 94 382 1.8E-132 T 11-10-2018 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 9.1E-261 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 SUPERFAMILY SSF50615 10 94 5.1E-26 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 SUPERFAMILY SSF47917 383 511 1.18E-45 T 11-10-2018 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Gene3D G3DSA:2.40.30.20 1 93 8.2E-30 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.9E-45 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 5.1E-74 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Gene3D G3DSA:1.20.150.20 383 513 2.6E-50 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21455 1cad1a29a5784e04e0680b4f50af5bb5 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 92 2.5E-13 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 Gene3D G3DSA:3.10.20.30 1 111 1.4E-37 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 15 92 7.3E-16 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 SUPERFAMILY SSF54292 4 109 1.4E-35 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 4.7E-62 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 PRINTS PR00355 Adrenodoxin signature 42 52 5.4E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 PRINTS PR00355 Adrenodoxin signature 60 74 5.4E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 BED32_16045 133436b9674ee09e7af4e43c50465fb1 111 PRINTS PR00355 Adrenodoxin signature 83 91 5.4E-10 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 2 295 43.497 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 Pfam PF01380 SIS domain 129 208 3.3E-8 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 6 295 1.3E-126 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 185 202 - T 11-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 Gene3D G3DSA:3.40.50.10490 1 218 5.9E-85 T 11-10-2018 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 Gene3D G3DSA:1.10.8.1080 219 295 6.1E-30 T 11-10-2018 BED32_16205 dbfaff5b9cb3e76fc72a6194739b7d7d 295 SUPERFAMILY SSF53697 4 248 1.74E-73 T 11-10-2018 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 Pfam PF00367 phosphotransferase system, EIIB 443 473 1.9E-13 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 404 499 1.4E-18 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 452 469 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 TIGRFAM TIGR02005 PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component 3 513 4.2E-217 T 11-10-2018 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component GO:0008982|GO:0009401 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 Pfam PF02378 Phosphotransferase system, EIIC 10 341 4.6E-62 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 SUPERFAMILY SSF55604 439 514 6.67E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_05770 3bf6479b9a0be511df6f7c0d7f0857f5 514 Gene3D G3DSA:3.30.1360.60 435 514 2.2E-21 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_09245 588be77e3a5c1ab2ae5a2c0462b24c66 296 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 11 230 8.8E-79 T 11-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 BED32_09245 588be77e3a5c1ab2ae5a2c0462b24c66 296 Gene3D G3DSA:3.20.20.60 1 295 1.6E-86 T 11-10-2018 BED32_09245 588be77e3a5c1ab2ae5a2c0462b24c66 296 PIRSF PIRSF015582 2 295 1.2E-74 T 11-10-2018 IPR011206 Citrate lyase beta subunit-like BED32_09245 588be77e3a5c1ab2ae5a2c0462b24c66 296 SUPERFAMILY SSF51621 7 240 1.61E-60 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_05160 c87cb1cb5c09f10786d30f1e76653e76 400 Gene3D G3DSA:1.20.1250.20 11 385 8.5E-48 T 11-10-2018 BED32_05160 c87cb1cb5c09f10786d30f1e76653e76 400 SUPERFAMILY SSF103473 12 390 7.32E-56 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_05160 c87cb1cb5c09f10786d30f1e76653e76 400 Pfam PF07690 Major Facilitator Superfamily 20 298 4.6E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_13840 ea64100e811f66f600a44e5cb4c4362a 339 Gene3D G3DSA:3.90.1150.10 246 336 1.4E-27 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_13840 ea64100e811f66f600a44e5cb4c4362a 339 Gene3D G3DSA:3.40.640.10 1 245 3.3E-98 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_13840 ea64100e811f66f600a44e5cb4c4362a 339 PIRSF PIRSF017617 1 339 1.0E-129 T 11-10-2018 IPR023603 Threonine aldolase BED32_13840 ea64100e811f66f600a44e5cb4c4362a 339 Pfam PF01212 Beta-eliminating lyase 4 284 2.3E-95 T 11-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 BED32_13840 ea64100e811f66f600a44e5cb4c4362a 339 SUPERFAMILY SSF53383 3 336 8.74E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_02495 8dbab59216d405f162d1a04bb20c9b73 286 SUPERFAMILY SSF56317 2 267 2.22E-71 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_02495 8dbab59216d405f162d1a04bb20c9b73 286 Gene3D G3DSA:3.60.110.10 1 272 2.0E-84 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_02495 8dbab59216d405f162d1a04bb20c9b73 286 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site BED32_02495 8dbab59216d405f162d1a04bb20c9b73 286 Pfam PF00795 Carbon-nitrogen hydrolase 6 241 8.8E-48 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 469 479 3.8E-24 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 311 325 3.8E-24 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 522 541 3.8E-24 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 545 557 3.8E-24 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 3.8E-24 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 686 41.114 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 Gene3D G3DSA:3.40.1110.10 325 453 2.8E-55 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 SUPERFAMILY SSF81665 33 576 4.45E-10 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 Pfam PF00122 E1-E2 ATPase 118 288 2.0E-31 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 378 610 2.1E-48 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 72 347 7.4E-34 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 3 683 0.0 T 11-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 SUPERFAMILY SSF81653 115 207 1.57E-20 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 Gene3D G3DSA:2.70.150.20 106 212 4.3E-26 T 11-10-2018 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 SUPERFAMILY SSF56784 299 565 5.77E-37 T 11-10-2018 IPR036412 HAD-like superfamily BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 313 319 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 BED32_07650 d78f4fc9e1bbcac95cc3052ecd0885ec 688 Pfam PF00702 haloacid dehalogenase-like hydrolase 307 536 5.0E-35 T 11-10-2018 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00959 Mevalonate kinase family signature 25 49 4.0E-46 T 11-10-2018 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00959 Mevalonate kinase family signature 328 345 4.0E-46 T 11-10-2018 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00959 Mevalonate kinase family signature 119 141 4.0E-46 T 11-10-2018 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00959 Mevalonate kinase family signature 162 181 4.0E-46 T 11-10-2018 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Pfam PF08544 GHMP kinases C terminal 279 361 2.2E-9 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Gene3D G3DSA:3.30.230.10 2 205 9.4E-67 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Pfam PF00288 GHMP kinases N terminal domain 115 181 4.9E-15 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00473 Galactokinase signature 263 277 2.5E-29 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00473 Galactokinase signature 112 130 2.5E-29 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00473 Galactokinase signature 92 103 2.5E-29 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PRINTS PR00473 Galactokinase signature 27 45 2.5E-29 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 TIGRFAM TIGR00131 gal_kin: galactokinase 5 383 2.1E-153 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Hamap MF_00246 Galactokinase [galK]. 25 382 42.348 T 11-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Gene3D G3DSA:3.30.70.890 206 382 9.9E-60 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 11-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 PIRSF PIRSF000530 1 383 2.1E-119 T 11-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 Pfam PF10509 Galactokinase galactose-binding signature 11 57 4.5E-22 T 11-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 SUPERFAMILY SSF54211 3 203 3.49E-64 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 121 132 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 BED32_07910 b622a098a70ea0407f4aaf58b4ef7c0d 383 SUPERFAMILY SSF55060 205 381 2.4E-53 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_01495 a527377129d0f1afbaaa6dbe2f38b1e3 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 5.6E-21 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_01495 a527377129d0f1afbaaa6dbe2f38b1e3 87 SUPERFAMILY SSF159871 4 87 1.57E-24 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_01495 a527377129d0f1afbaaa6dbe2f38b1e3 87 Gene3D G3DSA:3.30.1660.10 21 87 3.5E-24 T 11-10-2018 IPR025543 Dodecin-like BED32_11165 c226d02823c1a9c8b2cbe2188c305a9a 110 SUPERFAMILY SSF103481 6 105 6.15E-20 T 11-10-2018 BED32_11165 c226d02823c1a9c8b2cbe2188c305a9a 110 Gene3D G3DSA:1.10.3730.20 1 110 3.5E-37 T 11-10-2018 BED32_11165 c226d02823c1a9c8b2cbe2188c305a9a 110 Pfam PF00893 Small Multidrug Resistance protein 4 94 1.8E-27 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 Pfam PF00005 ABC transporter 19 157 2.1E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 Gene3D G3DSA:3.40.50.300 11 227 3.2E-58 T 11-10-2018 BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 SMART SM00382 24 214 1.0E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 210 1.7E-100 T 11-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 BED32_18030 4cdecd9104917f2aa916570ffbdde5f4 233 SUPERFAMILY SSF52540 1 221 2.89E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03760 1ffadba0df0148fb3b551c4ed5dc5b99 347 SUPERFAMILY SSF81345 19 342 6.54E-69 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_03760 1ffadba0df0148fb3b551c4ed5dc5b99 347 Gene3D G3DSA:1.10.3470.10 23 346 9.2E-85 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_03760 1ffadba0df0148fb3b551c4ed5dc5b99 347 Pfam PF01032 FecCD transport family 36 342 1.6E-80 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_09295 38db4d1c9b202292af268b3704f54e1f 257 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 26 179 2.6E-47 T 11-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 BED32_09295 38db4d1c9b202292af268b3704f54e1f 257 Gene3D G3DSA:2.60.120.330 1 184 4.6E-41 T 11-10-2018 IPR027443 Isopenicillin N synthase-like BED32_09295 38db4d1c9b202292af268b3704f54e1f 257 SUPERFAMILY SSF51197 50 191 3.02E-18 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1063 13.141 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 1.1E-39 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 710 724 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-76 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 674 876 2.3E-37 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:1.10.1030.10 404 522 7.3E-39 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF52440 558 676 1.28E-48 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:3.40.50.20 1 116 1.1E-50 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF52335 939 1071 1.26E-34 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:3.40.50.1380 937 1073 2.2E-35 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF52440 1 127 5.75E-50 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF56059 674 934 7.78E-104 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 6.5E-64 T 11-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:3.40.50.20 524 663 3.4E-64 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF48108 396 554 2.88E-53 T 11-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SUPERFAMILY SSF56059 128 401 4.42E-109 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 839 846 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:3.30.470.20 666 936 5.2E-125 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Gene3D G3DSA:3.30.470.20 119 403 6.9E-132 T 11-10-2018 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1068 13.332 T 11-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 Pfam PF02142 MGS-like domain 957 1041 4.7E-18 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SMART SM00851 956 1042 1.3E-30 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_18115 0c468228b99f464c08692b1fec4e8048 1077 SMART SM01096 424 547 2.4E-74 T 11-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 BED32_21395 e04380e574da5abef820c76bb2fbb3b3 488 Hamap MF_01626 Protein ViaA [viaA]. 1 488 58.889 T 11-10-2018 IPR023481 Uncharacterised protein family ViaA BED32_21395 e04380e574da5abef820c76bb2fbb3b3 488 SUPERFAMILY SSF53300 323 465 3.34E-18 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BED32_21395 e04380e574da5abef820c76bb2fbb3b3 488 Gene3D G3DSA:3.40.50.410 315 463 7.4E-6 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily BED32_21395 e04380e574da5abef820c76bb2fbb3b3 488 Pfam PF05762 VWA domain containing CoxE-like protein 309 441 7.8E-9 T 11-10-2018 IPR008912 Uncharacterised protein family CoxE-like BED32_21395 e04380e574da5abef820c76bb2fbb3b3 488 SMART SM00327 324 488 1.2E-7 T 11-10-2018 IPR002035 von Willebrand factor, type A BED32_13090 da7a27cfca899716cf73c0da376b27f6 129 Pfam PF07233 Protein of unknown function (DUF1425) 38 127 7.7E-27 T 11-10-2018 IPR010824 Protein of unknown function DUF1425 BED32_13090 da7a27cfca899716cf73c0da376b27f6 129 Gene3D G3DSA:2.60.40.3230 24 128 6.5E-23 T 11-10-2018 IPR038483 YcfL-like superfamily BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 Gene3D G3DSA:1.10.8.540 484 572 4.5E-31 T 11-10-2018 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PIRSF PIRSF005419 1 673 3.7E-220 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 16 668 3.5E-269 T 11-10-2018 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 Gene3D G3DSA:3.40.30.60 356 483 3.9E-11 T 11-10-2018 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 134 150 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 72 91 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 183 200 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 153 171 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 35 48 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 234 248 2.3E-55 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 Gene3D G3DSA:1.10.490.80 574 668 2.0E-25 T 11-10-2018 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 Pfam PF00771 FHIPEP family 29 660 1.2E-215 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_19570 e45afb12e93c073ba7eae7b8188b65ae 679 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 139 162 - T 11-10-2018 IPR025505 FHIPEP conserved site BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 Gene3D G3DSA:1.20.58.220 333 429 3.6E-5 T 11-10-2018 IPR038078 PhoU-like domain superfamily BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 307 5.0E-102 T 11-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 SUPERFAMILY SSF109755 321 531 7.33E-24 T 11-10-2018 BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 Pfam PF01895 PhoU domain 340 421 1.2E-5 T 11-10-2018 IPR026022 PhoU domain BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 520 6.0E-107 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 Pfam PF02690 Na+/Pi-cotransporter 13 147 2.9E-34 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 BED32_04115 cc76a2165ea6cf92cb39b0d6ba4ba164 539 Pfam PF02690 Na+/Pi-cotransporter 159 251 2.2E-9 T 11-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 BED32_20305 fcbd78ed17f92499d70669aec70fb28b 296 TIGRFAM TIGR00688 rarD: protein RarD 8 261 1.7E-98 T 11-10-2018 IPR004626 RarD protein GO:0005887 BED32_20305 fcbd78ed17f92499d70669aec70fb28b 296 SUPERFAMILY SSF103481 188 285 1.14E-6 T 11-10-2018 BED32_20305 fcbd78ed17f92499d70669aec70fb28b 296 SUPERFAMILY SSF103481 42 145 2.48E-15 T 11-10-2018 BED32_20305 fcbd78ed17f92499d70669aec70fb28b 296 Pfam PF00892 EamA-like transporter family 9 142 4.4E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 271 51.404 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 Pfam PF00149 Calcineurin-like phosphoesterase 2 136 1.1E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 SUPERFAMILY SSF56300 1 261 3.01E-57 T 11-10-2018 BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 PIRSF PIRSF000903 1 275 2.3E-121 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 Gene3D G3DSA:3.60.21.10 1 279 1.7E-82 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_18090 0efc1a4ebf8c4eb44be2ec78a6dcc6d1 291 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 271 6.3E-149 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 Pfam PF00459 Inositol monophosphatase family 4 232 4.8E-46 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 SUPERFAMILY SSF56655 1 242 6.54E-72 T 11-10-2018 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 Gene3D G3DSA:3.30.540.10 1 146 1.8E-42 T 11-10-2018 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 Gene3D G3DSA:3.40.190.80 147 245 1.1E-32 T 11-10-2018 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 1 246 40.225 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 80 93 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 1 244 2.2E-101 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 BED32_19105 f427d1ce7b9e11e566d77ed713dcc77a 246 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 204 218 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BED32_11765 42e8b4e27636f609a580b223217429db 221 Pfam PF00717 Peptidase S24-like 132 205 6.4E-16 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_11765 42e8b4e27636f609a580b223217429db 221 SMART SM00530 8 63 1.2E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11765 42e8b4e27636f609a580b223217429db 221 Gene3D G3DSA:1.10.260.40 8 62 7.5E-12 T 11-10-2018 BED32_11765 42e8b4e27636f609a580b223217429db 221 SUPERFAMILY SSF51306 90 215 4.53E-28 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_11765 42e8b4e27636f609a580b223217429db 221 Pfam PF01381 Helix-turn-helix 11 59 1.2E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_11765 42e8b4e27636f609a580b223217429db 221 SUPERFAMILY SSF47413 3 59 4.28E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11765 42e8b4e27636f609a580b223217429db 221 Gene3D G3DSA:2.10.109.10 87 220 1.5E-47 T 11-10-2018 BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 Gene3D G3DSA:3.40.50.720 3 267 3.1E-49 T 11-10-2018 BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 17 172 7.7E-30 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 204 458 2.0E-69 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 Gene3D G3DSA:1.10.1040.10 272 483 4.8E-61 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 SUPERFAMILY SSF51735 2 265 1.69E-66 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_03250 2d9fa0b9c52c3e2540b818bfe414d35a 483 SUPERFAMILY SSF48179 273 482 1.22E-50 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 Gene3D G3DSA:3.40.720.10 7 511 2.9E-215 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 Pfam PF01676 Metalloenzyme superfamily 6 501 6.7E-82 T 11-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 SUPERFAMILY SSF53649 5 511 1.18E-73 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 85 300 2.5E-82 T 11-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 512 3.9E-239 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 Gene3D G3DSA:3.40.1450.10 79 313 2.9E-215 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 PIRSF PIRSF001492 1 515 1.3E-204 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 SUPERFAMILY SSF64158 79 311 7.06E-86 T 11-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_20920 62ededb41669194aa7a5074f8e819db6 515 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 513 49.939 T 11-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 SUPERFAMILY SSF88659 122 183 5.23E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 1 189 2.4E-99 T 11-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 Pfam PF08281 Sigma-70, region 4 129 180 1.1E-18 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 Gene3D G3DSA:1.10.1740.10 1 120 1.5E-46 T 11-10-2018 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 Pfam PF04542 Sigma-70 region 2 25 91 1.2E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 SUPERFAMILY SSF88946 2 103 6.75E-30 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 183 4.3E-30 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_16280 d72eaa35cf08109f7a6b03c86a4d0396 191 Gene3D G3DSA:1.10.10.10 121 191 7.8E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 2.1E-109 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 SUPERFAMILY SSF52313 6 236 2.88E-97 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.2E-37 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 Gene3D G3DSA:1.10.287.610 103 150 5.5E-94 T 11-10-2018 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 Pfam PF00318 Ribosomal protein S2 9 224 9.3E-95 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.968 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16890 3c321b109ac281a87c97de4b2918f11e 241 Gene3D G3DSA:3.40.50.10490 8 219 5.5E-94 T 11-10-2018 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 278 463 6.6E-20 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 SUPERFAMILY SSF53067 9 259 1.15E-58 T 11-10-2018 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 Gene3D G3DSA:3.30.420.40 254 515 3.7E-52 T 11-10-2018 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 256 9.5E-49 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 Hamap MF_02053 Autoinducer-2 kinase [lsrK]. 11 526 88.073 T 11-10-2018 IPR033676 Autoinducer-2 kinase GO:0009372|GO:0071518 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 SUPERFAMILY SSF53067 258 507 4.59E-48 T 11-10-2018 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 Gene3D G3DSA:3.30.420.40 5 253 1.1E-61 T 11-10-2018 BED32_18555 2d22ef6992fb8783a64d9136ede4b692 526 PIRSF PIRSF000538 7 515 1.6E-116 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 BED32_03020 ff2972d1aa42580437c2c8d7c694cc2f 130 Gene3D G3DSA:3.30.230.10 1 130 2.8E-53 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_03020 ff2972d1aa42580437c2c8d7c694cc2f 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 1.7E-45 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 BED32_03020 ff2972d1aa42580437c2c8d7c694cc2f 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 BED32_03020 ff2972d1aa42580437c2c8d7c694cc2f 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.543 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid BED32_03020 ff2972d1aa42580437c2c8d7c694cc2f 130 SUPERFAMILY SSF54211 5 130 7.59E-49 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_02800 4037963d23cbc66484672d867c18981d 98 TIGRFAM TIGR03578 EF_0831: conserved hypothetical protein EF_0831/AHA_3912 2 96 3.6E-39 T 11-10-2018 IPR020037 Protein of unknown function DUF4312 BED32_02800 4037963d23cbc66484672d867c18981d 98 Pfam PF14189 Domain of unknown function (DUF4312) 6 88 2.1E-37 T 11-10-2018 IPR020037 Protein of unknown function DUF4312 BED32_01510 51be98077eac04769aece5264a191bac 771 SUPERFAMILY SSF52540 4 182 1.23E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01510 51be98077eac04769aece5264a191bac 771 Pfam PF02421 Ferrous iron transport protein B 5 163 2.7E-65 T 11-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 BED32_01510 51be98077eac04769aece5264a191bac 771 Pfam PF07664 Ferrous iron transport protein B C terminus 456 508 7.1E-22 T 11-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 BED32_01510 51be98077eac04769aece5264a191bac 771 Gene3D G3DSA:3.40.50.300 1 168 1.3E-48 T 11-10-2018 BED32_01510 51be98077eac04769aece5264a191bac 771 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 688 1.5E-226 T 11-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 BED32_01510 51be98077eac04769aece5264a191bac 771 Pfam PF07670 Nucleoside recognition 354 444 1.9E-12 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BED32_01510 51be98077eac04769aece5264a191bac 771 Pfam PF07670 Nucleoside recognition 513 690 3.9E-37 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 136 156 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 60 87 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 202 226 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 10 27 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 177 201 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 242 259 9.5E-42 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 6 326 38.014 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 Gene3D G3DSA:1.10.1040.10 193 338 2.7E-53 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 SUPERFAMILY SSF51735 8 182 4.19E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 PIRSF PIRSF000114 1 336 5.6E-101 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 SUPERFAMILY SSF48179 184 335 8.84E-58 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 8 162 3.7E-50 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 184 323 3.7E-53 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 Gene3D G3DSA:3.40.50.720 1 191 5.7E-55 T 11-10-2018 BED32_20900 11a4cf18b58330efdf1e6d96afd10b2f 339 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 192 213 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 BED32_09375 d2e461e2c3a9c329a2800d17c9efb72f 129 SUPERFAMILY SSF53822 37 104 7.5E-9 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_09375 d2e461e2c3a9c329a2800d17c9efb72f 129 Gene3D G3DSA:3.40.50.2300 37 117 2.9E-8 T 11-10-2018 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 232 363 8.2E-33 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 512 653 1.6E-58 T 11-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Gene3D G3DSA:3.40.50.300 13 177 6.2E-103 T 11-10-2018 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Gene3D G3DSA:1.10.8.60 8 240 6.2E-103 T 11-10-2018 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 SMART SM00382 37 179 1.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Gene3D G3DSA:3.30.300.150 510 638 1.4E-44 T 11-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Pfam PF13177 DNA polymerase III, delta subunit 20 177 7.6E-42 T 11-10-2018 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 1.9E-5 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 1.9E-5 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Gene3D G3DSA:1.20.272.10 242 363 6.0E-44 T 11-10-2018 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 SUPERFAMILY SSF48019 243 367 1.67E-35 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 SUPERFAMILY SSF52540 35 221 2.3E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 430 510 3.3E-22 T 11-10-2018 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_06290 751163f5d0f8992f1d4ad6be42777b0b 656 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 356 7.6E-134 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 BED32_01170 5782690e30c47ca281f93e221e09db1a 396 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 1 374 1.6E-119 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like BED32_01170 5782690e30c47ca281f93e221e09db1a 396 Gene3D G3DSA:1.10.8.260 247 307 6.0E-119 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily BED32_01170 5782690e30c47ca281f93e221e09db1a 396 SUPERFAMILY SSF51905 1 375 1.18E-44 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01170 5782690e30c47ca281f93e221e09db1a 396 SUPERFAMILY SSF160996 175 323 1.31E-42 T 11-10-2018 BED32_01170 5782690e30c47ca281f93e221e09db1a 396 Pfam PF03486 HI0933-like protein 1 374 3.6E-144 T 11-10-2018 BED32_01170 5782690e30c47ca281f93e221e09db1a 396 Gene3D G3DSA:3.50.50.60 1 373 6.0E-119 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01170 5782690e30c47ca281f93e221e09db1a 396 Gene3D G3DSA:2.40.30.10 173 324 6.0E-119 T 11-10-2018 BED32_06925 e769467874e034deac4819c07652bf14 242 SUPERFAMILY SSF47413 3 61 1.36E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_06925 e769467874e034deac4819c07652bf14 242 SUPERFAMILY SSF51306 106 235 7.85E-16 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_06925 e769467874e034deac4819c07652bf14 242 Gene3D G3DSA:2.10.109.10 115 239 9.9E-6 T 11-10-2018 BED32_06925 e769467874e034deac4819c07652bf14 242 Pfam PF00717 Peptidase S24-like 157 218 1.3E-9 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_06925 e769467874e034deac4819c07652bf14 242 Pfam PF01381 Helix-turn-helix 8 60 4.7E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_06925 e769467874e034deac4819c07652bf14 242 Gene3D G3DSA:1.10.260.40 1 68 1.5E-17 T 11-10-2018 BED32_06925 e769467874e034deac4819c07652bf14 242 SMART SM00530 6 60 1.0E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 Gene3D G3DSA:3.40.980.10 1 172 3.4E-48 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 400 116.915 T 11-10-2018 IPR008135 Competence-induced protein CinA BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 SMART SM00852 5 172 6.5E-34 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 SUPERFAMILY SSF53218 1 204 4.06E-37 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 SUPERFAMILY SSF142433 249 380 6.41E-5 T 11-10-2018 IPR036653 CinA-like, C-terminal BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 PIRSF PIRSF006728 1 385 1.7E-113 T 11-10-2018 IPR008135 Competence-induced protein CinA BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 398 1.4E-125 T 11-10-2018 IPR008135 Competence-induced protein CinA BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 2.0E-31 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_14445 c1448324e0cc85c08ff177dc07bf1b8c 400 Pfam PF00994 Probable molybdopterin binding domain 6 170 7.5E-33 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_19275 bb55020e1cca6c7db2788ba489680092 292 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 9 286 48.847 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 BED32_19275 bb55020e1cca6c7db2788ba489680092 292 Pfam PF02666 Phosphatidylserine decarboxylase 62 283 4.3E-59 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BED32_19275 bb55020e1cca6c7db2788ba489680092 292 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 48 284 1.7E-92 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 6 460 2.2E-183 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Pfam PF01225 Mur ligase family, catalytic domain 6 103 3.4E-29 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Pfam PF02875 Mur ligase family, glutamate ligase domain 318 403 3.7E-21 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Gene3D G3DSA:3.40.50.720 5 92 3.8E-34 T 11-10-2018 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Pfam PF08245 Mur ligase middle domain 109 289 2.7E-27 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 4 466 43.693 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 SUPERFAMILY SSF53244 308 462 8.79E-47 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 SUPERFAMILY SSF53623 90 307 1.57E-73 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Gene3D G3DSA:3.40.1190.10 93 307 6.2E-87 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 Gene3D G3DSA:3.90.190.20 308 476 2.2E-51 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17875 4bb05c988bf2999c15e8d997dc29c951 476 SUPERFAMILY SSF51984 5 91 2.75E-29 T 11-10-2018 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 TIGRFAM TIGR00077 lspA: signal peptidase II 2 161 9.6E-53 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 101 116 1.3E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 53 61 1.3E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 137 153 1.3E-18 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 ProSitePatterns PS00855 Signal peptidases II signature. 104 116 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 7 162 17.439 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_18140 8704c7fcf56b21d74f66c794953cd0b7 169 Pfam PF01252 Signal peptidase (SPase) II 16 154 1.7E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Gene3D G3DSA:3.30.499.10 373 590 2.2E-102 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 890 0.0 T 11-10-2018 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-917937 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 SUPERFAMILY SSF52016 629 889 1.06E-90 T 11-10-2018 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Pfam PF00694 Aconitase C-terminal domain 691 818 2.8E-49 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Gene3D G3DSA:3.20.19.10 653 890 1.5E-106 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 SUPERFAMILY SSF53732 11 626 7.46E-222 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Pfam PF00330 Aconitase family (aconitate hydratase) 69 562 1.1E-183 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 431 442 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 493 506 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 279 292 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 146 159 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 170 178 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 293 306 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 217 232 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 203 216 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 PRINTS PR00415 Aconitase family signature 372 386 1.6E-41 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 ProSitePatterns PS00450 Aconitase family signature 1. 427 443 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Gene3D G3DSA:1.10.1440.20 592 650 5.1E-17 T 11-10-2018 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 ProSitePatterns PS01244 Aconitase family signature 2. 493 506 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 BED32_11930 5e593d3da73f62ce00b93b1028a136f3 890 Gene3D G3DSA:3.30.499.20 6 372 1.3E-159 T 11-10-2018 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 Gene3D G3DSA:3.40.30.10 171 241 4.2E-25 T 11-10-2018 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 Gene3D G3DSA:3.40.30.10 4 165 2.5E-62 T 11-10-2018 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 Pfam PF00462 Glutaredoxin 173 231 5.3E-19 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 PRINTS PR00160 Glutaredoxin signature 173 191 4.9E-15 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 PRINTS PR00160 Glutaredoxin signature 228 241 4.9E-15 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 PRINTS PR00160 Glutaredoxin signature 214 227 4.9E-15 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 SUPERFAMILY SSF52833 2 242 1.84E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 Pfam PF08534 Redoxin 5 160 8.4E-33 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BED32_00680 f9cf588329d4a8b654c72321fd46d010 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 5.0E-40 T 11-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Pfam PF00384 Molybdopterin oxidoreductase 2 380 2.0E-23 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 4.9E-17 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Gene3D G3DSA:2.40.40.20 628 803 3.5E-75 T 11-10-2018 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Gene3D G3DSA:3.40.228.10 1 271 5.4E-72 T 11-10-2018 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Gene3D G3DSA:3.40.50.740 291 472 2.2E-59 T 11-10-2018 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 Gene3D G3DSA:3.40.228.10 536 627 4.7E-28 T 11-10-2018 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 SUPERFAMILY SSF50692 617 803 7.05E-44 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 11-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 SUPERFAMILY SSF53706 1 638 2.49E-232 T 11-10-2018 BED32_20670 42024b0fcf33f266f38a5c47a9fa367d 803 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 BED32_12015 632857008c47229252f7df9e5341bb54 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12015 632857008c47229252f7df9e5341bb54 268 SUPERFAMILY SSF51366 1 265 5.37E-90 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_12015 632857008c47229252f7df9e5341bb54 268 Gene3D G3DSA:3.20.20.70 1 268 3.4E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_12015 632857008c47229252f7df9e5341bb54 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 1.2E-95 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12015 632857008c47229252f7df9e5341bb54 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 6.1E-103 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12015 632857008c47229252f7df9e5341bb54 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.323 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_14640 ff08d52fd274ac086c9580b3bed9077a 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 188 6.0E-22 T 11-10-2018 BED32_14640 ff08d52fd274ac086c9580b3bed9077a 225 Gene3D G3DSA:1.10.150.240 25 87 3.0E-53 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_14640 ff08d52fd274ac086c9580b3bed9077a 225 SUPERFAMILY SSF56784 11 210 1.52E-41 T 11-10-2018 IPR036412 HAD-like superfamily BED32_14640 ff08d52fd274ac086c9580b3bed9077a 225 Gene3D G3DSA:3.40.50.1000 11 210 3.0E-53 T 11-10-2018 IPR023214 HAD superfamily BED32_14640 ff08d52fd274ac086c9580b3bed9077a 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 123 188 2.6E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_15505 a4c943659b04bf031f5a788200067482 88 Gene3D G3DSA:3.30.70.920 6 76 4.1E-25 T 11-10-2018 BED32_15505 a4c943659b04bf031f5a788200067482 88 Pfam PF03927 NapD protein 6 81 4.9E-25 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly BED32_15505 a4c943659b04bf031f5a788200067482 88 Hamap MF_02200 Chaperone NapD [napD]. 6 83 18.421 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 Pfam PF00710 Asparaginase, N-terminal 25 215 1.0E-60 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 PIRSF PIRSF500176 22 344 5.2E-82 T 11-10-2018 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 SUPERFAMILY SSF53774 23 343 5.1E-106 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 28 36 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 104 114 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 Gene3D G3DSA:3.40.50.1170 23 231 1.7E-83 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 PRINTS PR00139 Asparaginase/glutaminase family signature 26 37 9.2E-23 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 PRINTS PR00139 Asparaginase/glutaminase family signature 103 121 9.2E-23 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 PRINTS PR00139 Asparaginase/glutaminase family signature 279 297 9.2E-23 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 PIRSF PIRSF001220 21 345 7.9E-93 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 4 345 1.2E-152 T 11-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 SMART SM00870 25 339 1.3E-142 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_13685 8bb3648af50e7320c3e27a44cac9e8ec 345 Gene3D G3DSA:3.40.50.40 232 345 1.6E-43 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 BED32_09805 e9dfef5e57274366d006bb49b578be4a 207 Pfam PF03550 Outer membrane lipoprotein LolB 51 204 4.0E-47 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BED32_09805 e9dfef5e57274366d006bb49b578be4a 207 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 7 205 9.2E-76 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BED32_09805 e9dfef5e57274366d006bb49b578be4a 207 SUPERFAMILY SSF89392 21 206 5.49E-57 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX BED32_09805 e9dfef5e57274366d006bb49b578be4a 207 Gene3D G3DSA:2.50.20.10 30 207 2.3E-61 T 11-10-2018 BED32_09805 e9dfef5e57274366d006bb49b578be4a 207 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 6 206 30.241 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 BED32_21575 45cd13c07f9cda4c5025d80bf3f770d2 269 Gene3D G3DSA:3.40.190.10 108 217 6.9E-68 T 11-10-2018 BED32_21575 45cd13c07f9cda4c5025d80bf3f770d2 269 Pfam PF03180 NLPA lipoprotein 29 265 7.6E-57 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_21575 45cd13c07f9cda4c5025d80bf3f770d2 269 SUPERFAMILY SSF53850 29 258 7.0E-51 T 11-10-2018 BED32_21575 45cd13c07f9cda4c5025d80bf3f770d2 269 Gene3D G3DSA:3.40.190.10 43 261 6.9E-68 T 11-10-2018 BED32_18650 a0914fd4cac38dea91502c81eed9a9a5 149 Gene3D G3DSA:3.40.50.10110 1 145 3.7E-51 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily BED32_18650 a0914fd4cac38dea91502c81eed9a9a5 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 3.9E-39 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 BED32_18650 a0914fd4cac38dea91502c81eed9a9a5 149 SUPERFAMILY SSF102400 1 144 8.5E-48 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily BED32_16455 77b6fd89d8a7e9b7c41ba674f1d69dfc 329 Pfam PF03253 Urea transporter 24 319 5.7E-92 T 11-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 BED32_16455 77b6fd89d8a7e9b7c41ba674f1d69dfc 329 TIGRFAM TIGR03441 urea_trans_yut: urea transporter 21 318 3.3E-110 T 11-10-2018 IPR017807 Urea transporter, bacteria GO:0015204|GO:0016021|GO:0071918 BED32_16455 77b6fd89d8a7e9b7c41ba674f1d69dfc 329 PIRSF PIRSF016502 7 329 8.1E-104 T 11-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 BED32_16455 77b6fd89d8a7e9b7c41ba674f1d69dfc 329 Gene3D G3DSA:1.10.3430.10 8 328 2.6E-98 T 11-10-2018 IPR029020 Ammonium/urea transporter BED32_15515 42e5c408cbe917431e6b1385418365f2 209 SUPERFAMILY SSF46894 130 207 6.12E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 SMART SM00448 5 118 2.4E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 2.0E-22 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 Gene3D G3DSA:3.40.50.12740 6 208 5.7E-65 T 11-10-2018 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 Pfam PF00072 Response regulator receiver domain 7 118 2.3E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 SMART SM00421 146 203 1.3E-24 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.2E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.2E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.2E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_15515 42e5c408cbe917431e6b1385418365f2 209 SUPERFAMILY SSF52172 4 135 6.26E-33 T 11-10-2018 IPR011006 CheY-like superfamily BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 Gene3D G3DSA:3.40.50.2300 9 338 6.8E-119 T 11-10-2018 BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 3.9E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 315 330 3.9E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 237 255 3.9E-6 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 Gene3D G3DSA:3.40.50.2300 122 357 6.8E-119 T 11-10-2018 BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 SUPERFAMILY SSF53822 6 368 1.01E-79 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_04825 60c36c6847d504b70c6f6aa462ba8b2f 388 Pfam PF13433 Periplasmic binding protein domain 8 369 5.8E-127 T 11-10-2018 BED32_08290 a0ee1fbc7915bcedf8dca58d78535027 88 Gene3D G3DSA:1.20.120.910 1 73 4.3E-21 T 11-10-2018 BED32_08290 a0ee1fbc7915bcedf8dca58d78535027 88 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 36 68 1.8E-11 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BED32_08290 a0ee1fbc7915bcedf8dca58d78535027 88 SUPERFAMILY SSF57716 38 73 7.84E-6 T 11-10-2018 BED32_20425 b456cba06671a54b295f0cc52a911b56 252 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 67 243 5.4E-73 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BED32_20425 b456cba06671a54b295f0cc52a911b56 252 Hamap MF_01001 UDP-N-acetyl-D-mannosaminuronic acid transferase [wecG]. 7 252 58.718 T 11-10-2018 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase GO:0009246|GO:0016758 BED32_20425 b456cba06671a54b295f0cc52a911b56 252 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 71 237 2.8E-53 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 BED32_18640 72eda7c0bff9e17919f648ebe22569ea 358 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 1 342 9.1E-116 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 BED32_18640 72eda7c0bff9e17919f648ebe22569ea 358 Pfam PF03739 Predicted permease YjgP/YjgQ family 2 339 3.9E-72 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 Gene3D G3DSA:3.40.50.300 4 255 1.1E-58 T 11-10-2018 BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 ProSitePatterns PS00211 ABC transporters family signature. 412 426 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 SUPERFAMILY SSF52540 284 502 2.77E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 SUPERFAMILY SSF52540 18 239 5.1E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 Pfam PF00005 ABC transporter 35 184 1.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 Gene3D G3DSA:3.40.50.300 277 517 2.4E-41 T 11-10-2018 BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 SMART SM00382 293 488 6.2E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 SMART SM00382 44 232 7.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11480 f05b03c06b8a0ea3b19cfbe077632264 523 Pfam PF00005 ABC transporter 286 439 7.6E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 Gene3D G3DSA:2.40.50.140 2 104 1.9E-21 T 11-10-2018 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 SUPERFAMILY SSF55681 99 464 5.38E-96 T 11-10-2018 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 3.2E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 3.2E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 3.2E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 3.2E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 46.525 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 8.8E-83 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 SUPERFAMILY SSF50249 15 102 5.36E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13550 105767a7fbb0514a125d53414cddb34c 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 7.8E-12 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 4.0E-209 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 BED32_13550 105767a7fbb0514a125d53414cddb34c 466 Gene3D G3DSA:3.30.930.10 109 465 1.9E-109 T 11-10-2018 BED32_11460 f13c433d3bd4942f837b516e5f996541 337 Gene3D G3DSA:1.20.1530.20 7 327 4.6E-32 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily BED32_11460 f13c433d3bd4942f837b516e5f996541 337 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 319 5.2E-103 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter BED32_11460 f13c433d3bd4942f837b516e5f996541 337 PIRSF PIRSF026166 1 334 4.7E-135 T 11-10-2018 IPR016833 Putative sodium bile acid cotransporter BED32_11135 f4b0d13100e27bd966df7a52797d160c 235 Gene3D G3DSA:3.40.630.10 2 233 5.8E-54 T 11-10-2018 BED32_11135 f4b0d13100e27bd966df7a52797d160c 235 SUPERFAMILY SSF53187 18 214 4.63E-32 T 11-10-2018 BED32_11135 f4b0d13100e27bd966df7a52797d160c 235 Pfam PF00246 Zinc carboxypeptidase 74 157 1.1E-10 T 11-10-2018 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 BED32_14160 7aa3cc73ded3c2ba8c4eac0d79fa8146 233 Pfam PF01569 PAP2 superfamily 110 200 3.0E-8 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_14160 7aa3cc73ded3c2ba8c4eac0d79fa8146 233 SUPERFAMILY SSF48317 23 219 1.28E-21 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BED32_14160 7aa3cc73ded3c2ba8c4eac0d79fa8146 233 Hamap MF_01945 Lipid A 1-diphosphate synthase [lpxT]. 2 233 42.007 T 11-10-2018 IPR032908 Lipid A 1-diphosphate synthase GO:0005886|GO:0043165|GO:0050380 BED32_14160 7aa3cc73ded3c2ba8c4eac0d79fa8146 233 Gene3D G3DSA:1.20.144.10 121 226 2.2E-10 T 11-10-2018 BED32_14160 7aa3cc73ded3c2ba8c4eac0d79fa8146 233 SMART SM00014 95 210 2.0E-11 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 2.0E-42 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 526 3.8E-41 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 319 8.2E-32 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 SUPERFAMILY SSF52518 2 179 7.58E-45 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 417 436 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Gene3D G3DSA:3.40.50.1220 180 333 2.5E-49 T 11-10-2018 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Gene3D G3DSA:3.40.50.970 1 178 5.8E-61 T 11-10-2018 BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 SUPERFAMILY SSF52518 357 556 1.79E-62 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 SUPERFAMILY SSF52467 185 350 1.4E-43 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_13830 be68dff49e854e6fde441f3adabbc1b9 573 Gene3D G3DSA:3.40.50.970 349 573 1.2E-74 T 11-10-2018 BED32_10200 110053a3ef91b779d5743f58f73cf044 261 Gene3D G3DSA:1.10.3470.10 31 261 3.2E-10 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10200 110053a3ef91b779d5743f58f73cf044 261 SUPERFAMILY SSF81345 3 255 6.02E-42 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10200 110053a3ef91b779d5743f58f73cf044 261 Pfam PF00950 ABC 3 transport family 1 255 5.5E-85 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 BED32_17745 48a1ce8bcaa60a4d34b94aab7ae7c8d9 335 SMART SM00342 247 330 3.4E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_17745 48a1ce8bcaa60a4d34b94aab7ae7c8d9 335 SUPERFAMILY SSF46689 230 281 3.58E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_17745 48a1ce8bcaa60a4d34b94aab7ae7c8d9 335 Pfam PF12833 Helix-turn-helix domain 253 331 4.7E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_17745 48a1ce8bcaa60a4d34b94aab7ae7c8d9 335 SUPERFAMILY SSF46689 283 332 5.38E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_17745 48a1ce8bcaa60a4d34b94aab7ae7c8d9 335 Gene3D G3DSA:1.10.10.60 229 333 3.6E-24 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 SUPERFAMILY SSF53850 104 290 1.85E-57 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Gene3D G3DSA:3.40.190.10 188 273 5.6E-57 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 6 88 2.3E-33 T 11-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 260 282 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 SUPERFAMILY SSF48600 5 91 2.93E-20 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 SMART SM00830 10 90 3.3E-21 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Gene3D G3DSA:3.40.190.10 107 280 5.6E-57 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 324 331 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Gene3D G3DSA:1.20.59.10 1 106 1.3E-32 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 PIRSF PIRSF001500 1 379 1.3E-142 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Gene3D G3DSA:3.30.70.260 290 378 2.2E-23 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Pfam PF01817 Chorismate mutase type II 10 88 3.8E-15 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 SUPERFAMILY SSF55021 279 376 4.76E-23 T 11-10-2018 BED32_05025 b5a7c7090058ee5a1110d6ea934141d1 385 Pfam PF00800 Prephenate dehydratase 105 285 6.6E-63 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 BED32_06790 793a626720aa9d7ad5c1e3a1d2a2ceaf 197 PIRSF PIRSF012337 3 195 4.6E-51 T 11-10-2018 IPR014462 Phage-associated protein Gp45 BED32_06790 793a626720aa9d7ad5c1e3a1d2a2ceaf 197 Gene3D G3DSA:2.20.25.540 84 145 3.9E-6 T 11-10-2018 BED32_06790 793a626720aa9d7ad5c1e3a1d2a2ceaf 197 Pfam PF06890 Bacteriophage Mu Gp45 protein 20 175 6.4E-46 T 11-10-2018 IPR014462 Phage-associated protein Gp45 BED32_09605 5592c8a66332c489ce97e605ae1c2d61 224 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 90 222 1.4E-40 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BED32_09605 5592c8a66332c489ce97e605ae1c2d61 224 Pfam PF13144 Chaperone for flagella basal body P-ring formation 30 222 1.1E-49 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BED32_09605 5592c8a66332c489ce97e605ae1c2d61 224 Gene3D G3DSA:2.30.30.760 165 224 2.8E-25 T 11-10-2018 BED32_09605 5592c8a66332c489ce97e605ae1c2d61 224 SMART SM00858 100 162 3.1E-11 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 BED32_01515 f22064bdab8533794a5f4ba8d1f6f05d 74 Pfam PF04023 FeoA domain 7 63 1.2E-6 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BED32_01515 f22064bdab8533794a5f4ba8d1f6f05d 74 SUPERFAMILY SSF50037 5 70 2.17E-14 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal BED32_01515 f22064bdab8533794a5f4ba8d1f6f05d 74 Gene3D G3DSA:2.30.30.90 1 73 5.7E-28 T 11-10-2018 IPR038157 Ferrous iron transporter, core domain BED32_01515 f22064bdab8533794a5f4ba8d1f6f05d 74 SMART SM00899 1 72 1.1E-7 T 11-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 SUPERFAMILY SSF49373 737 809 8.63E-9 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 PRINTS PR01369 Intimin signature 274 289 1.4E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 PRINTS PR01369 Intimin signature 302 321 1.4E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 PRINTS PR01369 Intimin signature 457 469 1.4E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 PRINTS PR01369 Intimin signature 370 389 1.4E-15 T 11-10-2018 IPR003535 Intimin/invasin bacterial adhesion mediator protein GO:0007155 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 SUPERFAMILY SSF49373 633 729 1.31E-18 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Pfam PF09134 Invasin, domain 3 532 627 1.5E-7 T 11-10-2018 IPR015217 Invasin, domain 3 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Pfam PF09134 Invasin, domain 3 633 731 1.8E-27 T 11-10-2018 IPR015217 Invasin, domain 3 BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Gene3D G3DSA:3.10.350.10 57 127 6.8E-8 T 11-10-2018 IPR036779 LysM domain superfamily BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 SUPERFAMILY SSF49373 531 623 3.66E-10 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 SMART SM00634 636 725 3.6E-6 T 11-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Gene3D G3DSA:2.40.160.160 185 429 5.9E-108 T 11-10-2018 IPR038177 Inverse autotransporter, beta-domain superfamily BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Gene3D G3DSA:2.60.40.10 529 629 9.9E-14 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Pfam PF11924 Inverse autotransporter, beta-domain 155 422 1.1E-107 T 11-10-2018 IPR024519 Inverse autotransporter, beta-domain BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Gene3D G3DSA:2.60.40.10 630 731 2.4E-25 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_21645 1a280b9f95d6e95570e62fc1740eb784 876 Gene3D G3DSA:2.60.40.1080 736 820 1.7E-17 T 11-10-2018 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 Pfam PF03472 Autoinducer binding domain 13 157 9.8E-29 T 11-10-2018 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 SUPERFAMILY SSF46894 178 241 6.8E-15 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 ProSitePatterns PS00622 LuxR-type HTH domain signature. 195 222 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 Gene3D G3DSA:1.10.10.10 179 242 3.0E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 SMART SM00421 178 235 8.7E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 Pfam PF00196 Bacterial regulatory proteins, luxR family 180 233 9.5E-15 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 195 211 1.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 195 1.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 211 223 1.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 Gene3D G3DSA:3.30.450.80 1 178 2.9E-77 T 11-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily BED32_13350 233a562c29a53abc71cef1a1b17b4ab7 244 SUPERFAMILY SSF75516 2 162 3.01E-37 T 11-10-2018 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 Gene3D G3DSA:3.40.50.12240 15 440 3.5E-141 T 11-10-2018 BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 SMART SM00382 159 341 1.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 147 357 1.1E-65 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 6 437 1.1E-158 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_03855 3f43ed81c7043f5032e1ec3f55bd4b51 445 SUPERFAMILY SSF52540 95 362 5.63E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 SMART SM00387 16 127 9.8E-25 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 19 126 9.3E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 Gene3D G3DSA:3.30.565.10 7 127 6.1E-28 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 111 124 1.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 75 85 1.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 87 105 1.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 PRINTS PR00344 Bacterial sensor protein C-terminal signature 57 71 1.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09220 931de535b41ae808ac03be3533c0bfb4 127 SUPERFAMILY SSF55874 18 124 2.89E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_15450 01297d5b3f546eeab711f22cbadbdcf5 203 Pfam PF06572 Protein of unknown function (DUF1131) 30 199 8.4E-82 T 11-10-2018 IPR010938 Protein of unknown function DUF1131 BED32_15450 01297d5b3f546eeab711f22cbadbdcf5 203 ProDom PD105195 LIPOPROTEIN YFEY MEMBRANE OUTER PRECURSOR SIGNAL ESCHERICHIA ECS3303 EXPORTED Y1456 24 199 2.0E-79 T 11-10-2018 IPR010938 Protein of unknown function DUF1131 BED32_15450 01297d5b3f546eeab711f22cbadbdcf5 203 Gene3D G3DSA:2.60.460.10 33 200 4.9E-66 T 11-10-2018 IPR038714 YfeY-like superfamily BED32_16380 d3fc1e972323530487787696a0a598f4 501 Gene3D G3DSA:3.30.750.24 404 498 1.9E-26 T 11-10-2018 IPR036513 STAS domain superfamily BED32_16380 d3fc1e972323530487787696a0a598f4 501 SUPERFAMILY SSF52091 413 487 7.06E-10 T 11-10-2018 IPR036513 STAS domain superfamily BED32_16380 d3fc1e972323530487787696a0a598f4 501 Pfam PF01740 STAS domain 421 486 4.7E-6 T 11-10-2018 IPR002645 STAS domain BED32_16380 d3fc1e972323530487787696a0a598f4 501 Pfam PF00916 Sulfate permease family 33 160 1.1E-17 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BED32_16380 d3fc1e972323530487787696a0a598f4 501 Pfam PF00916 Sulfate permease family 166 372 1.7E-22 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 30.095 T 11-10-2018 IPR007551 Protein of unknown function DUF520 BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 2.2E-65 T 11-10-2018 IPR007551 Protein of unknown function DUF520 BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 Gene3D G3DSA:3.30.70.860 98 163 9.4E-32 T 11-10-2018 IPR035571 UPF0234-like, C-terminal BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 Gene3D G3DSA:3.30.70.990 9 97 3.0E-32 T 11-10-2018 IPR035570 UPF0234, N-terminal BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 SUPERFAMILY SSF89963 91 163 2.88E-29 T 11-10-2018 IPR036183 YajQ-like superfamily BED32_06015 850078f7b9c15020a4bb6cd627a40c90 163 SUPERFAMILY SSF89963 2 89 9.94E-30 T 11-10-2018 IPR036183 YajQ-like superfamily BED32_21900 5504faae273b18c196cb64f30d33baa7 857 Pfam PF11130 F pilus assembly Type-IV secretion system for plasmid transfer 32 234 2.0E-28 T 11-10-2018 IPR025955 Type-IV secretion system protein TraC/Conjugative transfer ATPase BED32_21900 5504faae273b18c196cb64f30d33baa7 857 Pfam PF01935 Domain of unknown function DUF87 456 667 4.8E-6 T 11-10-2018 IPR002789 Helicase HerA, central domain BED32_21900 5504faae273b18c196cb64f30d33baa7 857 Gene3D G3DSA:3.40.50.300 455 766 2.2E-30 T 11-10-2018 BED32_21900 5504faae273b18c196cb64f30d33baa7 857 SUPERFAMILY SSF52540 427 764 1.08E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21900 5504faae273b18c196cb64f30d33baa7 857 Gene3D G3DSA:1.10.8.730 520 656 2.2E-30 T 11-10-2018 BED32_15680 93dca4161445640c32786c541d97185f 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 6.2E-64 T 11-10-2018 BED32_15680 93dca4161445640c32786c541d97185f 208 SUPERFAMILY SSF53271 4 206 1.7E-66 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_15680 93dca4161445640c32786c541d97185f 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 43.773 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BED32_15680 93dca4161445640c32786c541d97185f 208 Gene3D G3DSA:3.40.50.2020 1 208 3.1E-72 T 11-10-2018 BED32_15680 93dca4161445640c32786c541d97185f 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 1.6E-89 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 Gene3D G3DSA:1.20.970.10 17 189 1.6E-122 T 11-10-2018 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 Pfam PF02885 Glycosyl transferase family, helical bundle domain 10 68 6.4E-12 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 Pfam PF00591 Glycosyl transferase family, a/b domain 80 326 7.2E-98 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 11 335 1.6E-124 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 SUPERFAMILY SSF47648 10 73 3.4E-14 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 SUPERFAMILY SSF52418 76 334 9.94E-91 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 9 337 38.808 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 BED32_12000 a7f62ce1117a0b34f844cb86d2f2775f 338 Gene3D G3DSA:3.40.1030.10 73 326 1.6E-122 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_02505 44985b4ae3acb85bf2ebb1007bffc5b9 428 Pfam PF07804 HipA-like C-terminal domain 165 393 1.8E-37 T 11-10-2018 IPR012893 HipA-like, C-terminal BED32_02505 44985b4ae3acb85bf2ebb1007bffc5b9 428 Gene3D G3DSA:1.10.1070.20 280 352 3.4E-5 T 11-10-2018 BED32_02505 44985b4ae3acb85bf2ebb1007bffc5b9 428 Pfam PF13657 HipA N-terminal domain 23 121 4.8E-16 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 BED32_18720 a39b64945535688ae484a01c734b9b86 578 Pfam PF08479 POTRA domain, ShlB-type 73 147 1.4E-15 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type BED32_18720 a39b64945535688ae484a01c734b9b86 578 Gene3D G3DSA:3.10.20.310 67 147 1.2E-12 T 11-10-2018 BED32_18720 a39b64945535688ae484a01c734b9b86 578 Gene3D G3DSA:2.40.160.50 180 576 2.6E-52 T 11-10-2018 BED32_18720 a39b64945535688ae484a01c734b9b86 578 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 357 537 4.1E-11 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal BED32_12355 74df26296adb02768b069e4780adbda6 562 SMART SM01016 1 73 7.3E-20 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_12355 74df26296adb02768b069e4780adbda6 562 Gene3D G3DSA:3.40.50.620 93 439 1.2E-109 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_12355 74df26296adb02768b069e4780adbda6 562 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 108 119 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_12355 74df26296adb02768b069e4780adbda6 562 SUPERFAMILY SSF47323 440 562 7.19E-35 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_12355 74df26296adb02768b069e4780adbda6 562 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 73 1.2E-19 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_12355 74df26296adb02768b069e4780adbda6 562 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 5 562 1.3E-201 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 Gene3D G3DSA:3.30.1360.70 1 92 3.5E-31 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 SMART SM00836 446 562 1.7E-36 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BED32_12355 74df26296adb02768b069e4780adbda6 562 Hamap MF_00123 Arginine--tRNA ligase [argS]. 1 562 28.111 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 115 131 1.4E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 139 152 1.4E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 100 115 1.4E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 PRINTS PR01038 Arginyl-tRNA synthetase signature 289 310 1.4E-25 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 SUPERFAMILY SSF55190 11 85 1.31E-20 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 Gene3D G3DSA:1.10.730.10 440 562 2.7E-32 T 11-10-2018 BED32_12355 74df26296adb02768b069e4780adbda6 562 Pfam PF05746 DALR anticodon binding domain 446 562 8.3E-34 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BED32_12355 74df26296adb02768b069e4780adbda6 562 Pfam PF00750 tRNA synthetases class I (R) 84 432 3.5E-168 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 BED32_12355 74df26296adb02768b069e4780adbda6 562 SUPERFAMILY SSF52374 95 440 4.22E-95 T 11-10-2018 BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 SUPERFAMILY SSF88946 8 106 2.71E-22 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 Pfam PF08281 Sigma-70, region 4 127 178 2.6E-13 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 Gene3D G3DSA:1.10.1740.10 9 91 3.0E-27 T 11-10-2018 BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 SUPERFAMILY SSF88659 120 182 2.62E-14 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 Gene3D G3DSA:1.10.10.10 92 184 4.6E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 Pfam PF04542 Sigma-70 region 2 27 93 5.2E-14 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 BED32_08310 74257cd7912fcbd23f4799f7e8a631be 184 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 181 4.3E-28 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Gene3D G3DSA:3.90.1150.10 425 594 1.3E-67 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 2.3E-27 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Gene3D G3DSA:3.40.50.2300 1 129 5.5E-54 T 11-10-2018 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 PIRSF PIRSF009393 1 712 1.4E-268 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Gene3D G3DSA:3.40.640.10 130 424 4.1E-89 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Gene3D G3DSA:3.90.100.10 595 713 5.5E-40 T 11-10-2018 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 2.2E-183 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 SUPERFAMILY SSF55904 566 708 1.96E-38 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 4.2E-41 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_16805 b983c613a5aa1d053790a8a80cdf8cbc 713 SUPERFAMILY SSF53383 130 561 2.77E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_14980 4cf00174ab4765e0c7ae72e3af1cf191 82 Pfam PF04995 Heme exporter protein D (CcmD) 15 58 1.1E-17 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BED32_14980 4cf00174ab4765e0c7ae72e3af1cf191 82 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 58 4.9E-18 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 SUPERFAMILY SSF48179 511 613 8.5E-29 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 SUPERFAMILY SSF51735 327 508 6.98E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 330 508 7.6E-58 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 26 730 0.0 T 11-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Gene3D G3DSA:3.90.226.10 22 323 5.1E-97 T 11-10-2018 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Pfam PF00378 Enoyl-CoA hydratase/isomerase 45 223 6.0E-41 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 511 604 3.9E-24 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 642 726 2.0E-6 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Gene3D G3DSA:3.40.50.720 328 513 5.1E-61 T 11-10-2018 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Gene3D G3DSA:1.10.1040.50 514 725 2.9E-68 T 11-10-2018 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 20 730 53.907 T 11-10-2018 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 508 533 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 SUPERFAMILY SSF48179 641 730 6.89E-26 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_14930 6260fde6ac92641b15e4edc8c665f9d2 745 SUPERFAMILY SSF52096 24 317 6.54E-65 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 Pfam PF05099 Tellurite resistance protein TerB 45 170 2.5E-11 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 274 40.342 T 11-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 PRINTS PR00625 DnaJ domain signature 253 273 1.4E-6 T 11-10-2018 IPR001623 DnaJ domain BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 PRINTS PR00625 DnaJ domain signature 211 229 1.4E-6 T 11-10-2018 IPR001623 DnaJ domain BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 PRINTS PR00625 DnaJ domain signature 229 244 1.4E-6 T 11-10-2018 IPR001623 DnaJ domain BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 Gene3D G3DSA:1.10.287.110 193 273 3.5E-13 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 SMART SM00271 208 273 5.7E-16 T 11-10-2018 IPR001623 DnaJ domain BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 Pfam PF00226 DnaJ domain 212 271 1.2E-9 T 11-10-2018 IPR001623 DnaJ domain BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 SUPERFAMILY SSF46565 131 271 3.35E-27 T 11-10-2018 IPR036869 Chaperone J-domain superfamily BED32_18060 9fc761a18877e00a2cffa70b8f0af332 275 Gene3D G3DSA:1.10.3680.10 37 182 9.4E-21 T 11-10-2018 IPR029024 TerB-like BED32_15805 d1d143046be5fe98079cf53225c510cb 120 SUPERFAMILY SSF141530 3 119 1.03E-37 T 11-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_15805 d1d143046be5fe98079cf53225c510cb 120 ProDom PD015842 PTS IIA COMPONENT GLUCITOL/SORBITOL-SPECIFIC SYSTEM ENZYME TRANSFERASE SYSTEM PHOSPHOTRANSFERASE EIIA 6 118 6.0E-35 T 11-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 BED32_15805 d1d143046be5fe98079cf53225c510cb 120 Pfam PF03829 PTS system glucitol/sorbitol-specific IIA component 4 115 2.7E-38 T 11-10-2018 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component GO:0005737|GO:0008982|GO:0009401 BED32_15805 d1d143046be5fe98079cf53225c510cb 120 Gene3D G3DSA:2.40.33.40 1 120 2.6E-29 T 11-10-2018 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 SUPERFAMILY SSF51735 1 167 3.73E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 289 6.1E-34 T 11-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 SUPERFAMILY SSF48179 168 289 9.52E-35 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 Gene3D G3DSA:3.40.50.720 1 167 1.3E-54 T 11-10-2018 BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 143 1.5E-23 T 11-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 Gene3D G3DSA:1.10.1040.10 168 290 7.1E-44 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_06010 d0d8c7e3cd720278d46f32d0392ba300 303 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 291 8.4E-82 T 11-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 SUPERFAMILY SSF49354 24 150 1.8E-45 T 11-10-2018 IPR008962 PapD-like superfamily BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 105 122 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 Gene3D G3DSA:2.60.40.10 30 150 3.7E-46 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 SUPERFAMILY SSF49584 152 234 1.44E-19 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 173 230 3.3E-14 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 PRINTS PR00969 Pili chaperone signature 29 38 5.1E-34 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 PRINTS PR00969 Pili chaperone signature 78 99 5.1E-34 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 PRINTS PR00969 Pili chaperone signature 167 182 5.1E-34 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 PRINTS PR00969 Pili chaperone signature 106 123 5.1E-34 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 PRINTS PR00969 Pili chaperone signature 132 147 5.1E-34 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 29 150 7.6E-47 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_03150 63b6ecc2a8ce9dc7e9f9ac12e072f220 239 Gene3D G3DSA:2.60.40.10 153 235 2.1E-18 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_14750 b5db1583aaa916aa683658f418262ffa 245 Gene3D G3DSA:3.30.70.1070 161 238 8.4E-6 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_14750 b5db1583aaa916aa683658f418262ffa 245 Hamap MF_02022 Cell division protein DedD [dedD]. 20 243 25.758 T 11-10-2018 IPR032898 Cell division protein DedD GO:0030428|GO:0032506 BED32_14750 b5db1583aaa916aa683658f418262ffa 245 Pfam PF05036 Sporulation related domain 166 238 3.7E-10 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 BED32_14750 b5db1583aaa916aa683658f418262ffa 245 SUPERFAMILY SSF110997 166 238 8.89E-13 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_09680 7186c3f920a7528f9c2e0d43b603de31 131 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 58 124 5.6E-19 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 BED32_09680 7186c3f920a7528f9c2e0d43b603de31 131 SUPERFAMILY SSF55166 7 125 2.88E-31 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_09680 7186c3f920a7528f9c2e0d43b603de31 131 Gene3D G3DSA:3.30.1380.10 7 124 1.2E-24 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_02885 d2a4e955b684905a7f0a01e10bda28e4 478 SUPERFAMILY SSF56059 21 466 1.71E-64 T 11-10-2018 BED32_02885 d2a4e955b684905a7f0a01e10bda28e4 478 Pfam PF14403 Circularly permuted ATP-grasp type 2 78 451 8.0E-162 T 11-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 BED32_02885 d2a4e955b684905a7f0a01e10bda28e4 478 Gene3D G3DSA:3.30.1490.270 348 407 9.3E-25 T 11-10-2018 BED32_02885 d2a4e955b684905a7f0a01e10bda28e4 478 Gene3D G3DSA:3.40.50.11290 214 311 2.1E-40 T 11-10-2018 BED32_02885 d2a4e955b684905a7f0a01e10bda28e4 478 PIRSF PIRSF005522 1 478 8.3E-233 T 11-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 Gene3D G3DSA:3.90.550.10 1 300 1.6E-94 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 53.226 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 Gene3D G3DSA:2.160.10.10 301 428 2.9E-41 T 11-10-2018 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 SUPERFAMILY SSF53448 19 294 9.46E-79 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 1.2E-156 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 211 221 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 Pfam PF00483 Nucleotidyl transferase 22 291 3.8E-69 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 SUPERFAMILY SSF51161 313 413 3.88E-20 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_01415 8d83db0b88f234bc69ffc02450805ca0 428 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 BED32_11440 71d2954b3672084c972ac001330fcc77 343 SMART SM00354 5 75 1.8E-29 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_11440 71d2954b3672084c972ac001330fcc77 343 Gene3D G3DSA:3.40.50.2300 63 153 8.1E-15 T 11-10-2018 BED32_11440 71d2954b3672084c972ac001330fcc77 343 Gene3D G3DSA:1.10.260.40 3 62 6.2E-21 T 11-10-2018 BED32_11440 71d2954b3672084c972ac001330fcc77 343 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 321 2.6E-57 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_11440 71d2954b3672084c972ac001330fcc77 343 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 11-10-2018 BED32_11440 71d2954b3672084c972ac001330fcc77 343 SUPERFAMILY SSF53822 65 342 1.41E-57 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_11440 71d2954b3672084c972ac001330fcc77 343 SUPERFAMILY SSF47413 4 63 5.32E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11440 71d2954b3672084c972ac001330fcc77 343 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 2.1E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_11440 71d2954b3672084c972ac001330fcc77 343 Gene3D G3DSA:3.40.50.2300 158 343 2.2E-42 T 11-10-2018 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 SUPERFAMILY SSF53955 290 451 4.22E-35 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 5 475 49.217 T 11-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 SMART SM00062 44 268 2.1E-33 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 309 337 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 SUPERFAMILY SSF53850 40 267 2.76E-37 T 11-10-2018 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Gene3D G3DSA:3.40.190.10 129 224 1.4E-61 T 11-10-2018 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Pfam PF01464 Transglycosylase SLT domain 297 402 3.7E-23 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 51 267 3.6E-31 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Gene3D G3DSA:3.40.190.10 38 263 1.4E-61 T 11-10-2018 BED32_16185 6eb70af33e1cd3dc5e0e0eb789c160f2 486 Gene3D G3DSA:1.10.530.10 286 468 1.4E-33 T 11-10-2018 BED32_04725 ca73688c1b77694069d134896baf488b 391 Gene3D G3DSA:2.40.30.170 54 319 2.6E-81 T 11-10-2018 BED32_04725 ca73688c1b77694069d134896baf488b 391 SUPERFAMILY SSF111369 57 242 7.19E-23 T 11-10-2018 BED32_04725 ca73688c1b77694069d134896baf488b 391 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 383 2.7E-41 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_04725 ca73688c1b77694069d134896baf488b 391 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 269 2.6E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_04725 ca73688c1b77694069d134896baf488b 391 Gene3D G3DSA:2.40.50.100 65 227 2.6E-81 T 11-10-2018 BED32_04725 ca73688c1b77694069d134896baf488b 391 Gene3D G3DSA:1.10.287.470 99 190 2.6E-81 T 11-10-2018 BED32_04725 ca73688c1b77694069d134896baf488b 391 Gene3D G3DSA:2.40.420.20 49 379 2.6E-81 T 11-10-2018 BED32_15925 2663aeede22dc2af18ab58e5c1097b6c 622 Gene3D G3DSA:2.60.20.10 18 120 2.0E-12 T 11-10-2018 BED32_16065 339e41e4cd74fd82fec6b3b6a1553d41 128 Pfam PF01592 NifU-like N terminal domain 2 126 5.1E-56 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 BED32_16065 339e41e4cd74fd82fec6b3b6a1553d41 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 4.0E-68 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 BED32_16065 339e41e4cd74fd82fec6b3b6a1553d41 128 Gene3D G3DSA:3.90.1010.10 1 128 3.2E-58 T 11-10-2018 BED32_16065 339e41e4cd74fd82fec6b3b6a1553d41 128 SUPERFAMILY SSF82649 1 125 2.38E-47 T 11-10-2018 BED32_06455 ae7319e235580788ae1b39ae1f9596b6 240 SUPERFAMILY SSF56300 3 237 2.22E-34 T 11-10-2018 BED32_06455 ae7319e235580788ae1b39ae1f9596b6 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 127.345 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 BED32_06455 ae7319e235580788ae1b39ae1f9596b6 240 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 7.7E-10 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_06455 ae7319e235580788ae1b39ae1f9596b6 240 Gene3D G3DSA:3.60.21.10 1 236 5.8E-19 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_06455 ae7319e235580788ae1b39ae1f9596b6 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 232 2.3E-104 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 BED32_07050 edb7592c98c6b1a9cd071fd396fea8e3 175 SMART SM01252 9 110 4.2E-21 T 11-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding BED32_07050 edb7592c98c6b1a9cd071fd396fea8e3 175 Pfam PF04383 KilA-N domain 10 106 3.6E-12 T 11-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 SUPERFAMILY SSF55816 337 547 3.01E-24 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 Gene3D G3DSA:3.60.21.10 17 323 2.3E-76 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 SUPERFAMILY SSF56300 15 323 1.99E-76 T 11-10-2018 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 ProSitePatterns PS00786 5'-nucleotidase signature 2. 103 114 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 Gene3D G3DSA:3.90.780.10 326 538 5.0E-29 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 PRINTS PR01607 Apyrase family signature 226 249 4.6E-11 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 PRINTS PR01607 Apyrase family signature 253 273 4.6E-11 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 PRINTS PR01607 Apyrase family signature 22 40 4.6E-11 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 PRINTS PR01607 Apyrase family signature 199 216 4.6E-11 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 Pfam PF02872 5'-nucleotidase, C-terminal domain 338 488 1.3E-19 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 BED32_07780 b9e80be3b8ac6f56b483ac3e9f9a9d9b 632 Pfam PF00149 Calcineurin-like phosphoesterase 25 243 4.3E-14 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_13955 e3f827a48c2918e5552440b5bd12f595 431 Pfam PF03222 Tryptophan/tyrosine permease family 32 397 9.1E-11 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 BED32_13955 e3f827a48c2918e5552440b5bd12f595 431 TIGRFAM TIGR00814 stp: serine transporter 20 419 6.2E-180 T 11-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 BED32_19440 cfd2ad50bba1c7bf27eb3cb308de73b6 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 29 157 5.5E-44 T 11-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 BED32_19440 cfd2ad50bba1c7bf27eb3cb308de73b6 345 Pfam PF05171 Haemin-degrading HemS.ChuX domain 207 338 4.4E-41 T 11-10-2018 IPR007845 Haemin-degrading HemS/ChuX domain GO:0006826 BED32_19440 cfd2ad50bba1c7bf27eb3cb308de73b6 345 Gene3D G3DSA:3.40.1570.10 13 281 1.0E-138 T 11-10-2018 BED32_19440 cfd2ad50bba1c7bf27eb3cb308de73b6 345 SUPERFAMILY SSF144064 5 338 1.08E-132 T 11-10-2018 BED32_19440 cfd2ad50bba1c7bf27eb3cb308de73b6 345 Gene3D G3DSA:3.40.1570.10 82 332 1.0E-138 T 11-10-2018 BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 Pfam PF02687 FtsX-like permease family 554 642 3.8E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 SUPERFAMILY SSF52540 4 225 4.52E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 Pfam PF00005 ABC transporter 24 172 2.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 Pfam PF12704 MacB-like periplasmic core domain 273 491 1.1E-39 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 SMART SM00382 33 220 1.1E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13795 deffd41cdfb46caf2aa187e48ba6f09a 649 Gene3D G3DSA:3.40.50.300 1 271 3.7E-70 T 11-10-2018 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 SUPERFAMILY SSF52794 104 204 1.74E-34 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 SUPERFAMILY SSF52794 4 88 8.11E-9 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 Pfam PF02378 Phosphotransferase system, EIIC 230 493 3.0E-15 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 107 193 8.4E-18 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 106 189 7.7E-39 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 214 549 1.0E-142 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 BED32_14085 abdf1a174ec484afaa16f8bd6734cc63 559 Gene3D G3DSA:3.40.50.2300 95 205 5.5E-38 T 11-10-2018 BED32_04075 4d168a7c25abc0b7de190a575a8b6c61 227 Pfam PF11769 Protein of unknown function (DUF3313) 18 213 1.7E-49 T 11-10-2018 IPR021747 Protein of unknown function DUF3313 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 180 201 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 156 175 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 207 226 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 333 344 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 92 114 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 271 298 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 133 153 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 300 311 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 PRINTS PR00688 Xylose isomerase signature 229 253 7.3E-85 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 52.809 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 Gene3D G3DSA:3.20.20.150 2 439 1.6E-180 T 11-10-2018 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 3.7E-215 T 11-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 BED32_20610 292329ced2eda07cecbd2e3aa56cd897 439 SUPERFAMILY SSF51658 4 438 5.93E-172 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily BED32_10975 1a672fa24ff2a5cf036dddce1c689c04 105 Gene3D G3DSA:2.40.128.200 27 104 2.5E-26 T 11-10-2018 IPR036328 C-type lysozyme inhibitor superfamily BED32_10975 1a672fa24ff2a5cf036dddce1c689c04 105 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 34 95 5.3E-17 T 11-10-2018 IPR018660 C-type lysozyme inhibitor BED32_10975 1a672fa24ff2a5cf036dddce1c689c04 105 SUPERFAMILY SSF141488 29 102 1.44E-23 T 11-10-2018 IPR036328 C-type lysozyme inhibitor superfamily BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 Gene3D G3DSA:3.40.1410.10 84 241 1.1E-36 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 SMART SM00866 96 236 7.1E-27 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 SMART SM00345 17 75 7.9E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 SUPERFAMILY SSF46785 8 82 4.12E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 Gene3D G3DSA:1.10.10.10 10 75 1.2E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 TIGRFAM TIGR02325 C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF 7 241 1.2E-85 T 11-10-2018 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 2.6E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 Pfam PF07702 UTRA domain 96 235 2.4E-29 T 11-10-2018 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 BED32_18730 524ce7a5510216777430fd6bcfd95e90 241 SUPERFAMILY SSF64288 63 240 2.83E-36 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily BED32_05805 fbf31c9b1a7959ea21ea81238410992e 89 Pfam PF07338 Protein of unknown function (DUF1471) 33 89 6.3E-20 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_05805 fbf31c9b1a7959ea21ea81238410992e 89 Gene3D G3DSA:3.30.1660.10 20 89 8.6E-22 T 11-10-2018 IPR025543 Dodecin-like BED32_05805 fbf31c9b1a7959ea21ea81238410992e 89 SUPERFAMILY SSF159871 2 89 5.23E-25 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_13210 b26109cee653f6065f038604c955a38c 1161 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 425 1.5E-169 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BED32_13210 b26109cee653f6065f038604c955a38c 1161 Pfam PF10150 Ribonuclease E/G family 121 391 7.1E-92 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BED32_13210 b26109cee653f6065f038604c955a38c 1161 Hamap MF_00970 Ribonuclease E [rne]. 1 1147 39.261 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 BED32_13210 b26109cee653f6065f038604c955a38c 1161 SMART SM00316 37 119 8.4E-13 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_13210 b26109cee653f6065f038604c955a38c 1161 Pfam PF00575 S1 RNA binding domain 36 118 1.4E-16 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_13210 b26109cee653f6065f038604c955a38c 1161 SUPERFAMILY SSF50249 40 124 8.19E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13210 b26109cee653f6065f038604c955a38c 1161 Gene3D G3DSA:2.40.50.140 32 125 8.9E-34 T 11-10-2018 BED32_13210 b26109cee653f6065f038604c955a38c 1161 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 1125 1158 2.1E-13 T 11-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal BED32_13210 b26109cee653f6065f038604c955a38c 1161 Gene3D G3DSA:3.40.1260.20 401 510 3.9E-42 T 11-10-2018 BED32_06915 bd80077f62eeaf46c19d90ebcdd56d50 147 Pfam PF15968 Membrane-anchored ion channel, Abi component 9 146 4.0E-42 T 11-10-2018 IPR031892 Abi component, membrane-anchored ion channel RexB BED32_05330 bd80077f62eeaf46c19d90ebcdd56d50 147 Pfam PF15968 Membrane-anchored ion channel, Abi component 9 146 4.0E-42 T 11-10-2018 IPR031892 Abi component, membrane-anchored ion channel RexB BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 SUPERFAMILY SSF51735 458 631 1.46E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Pfam PF00696 Amino acid kinase family 13 285 1.2E-40 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Pfam PF00742 Homoserine dehydrogenase 609 804 3.2E-43 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 SUPERFAMILY SSF53633 13 300 1.36E-56 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:3.30.70.260 390 453 9.8E-6 T 11-10-2018 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 SUPERFAMILY SSF55347 609 792 1.05E-46 T 11-10-2018 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 PIRSF PIRSF000727 13 811 4.5E-290 T 11-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 466 601 1.8E-21 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:3.30.70.260 376 389 9.8E-6 T 11-10-2018 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 16 454 4.3E-63 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 655 677 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:3.40.1160.10 16 299 5.4E-72 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:1.20.120.1320 52 146 5.4E-72 T 11-10-2018 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:3.40.50.720 461 807 6.1E-104 T 11-10-2018 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 ProSitePatterns PS00324 Aspartokinase signature. 15 23 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_00595 fce39eeb40e328d57782c5d32737ed89 811 Gene3D G3DSA:3.30.360.10 620 790 6.1E-104 T 11-10-2018 BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 Pfam PF09059 TyeA 269 333 5.1E-6 T 11-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 Pfam PF07201 HrpJ-like domain 49 202 7.0E-12 T 11-10-2018 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 TIGRFAM TIGR02511 type_III_tyeA: type III secretion effector delivery regulator, TyeA family 266 336 1.5E-10 T 11-10-2018 IPR013351 Type III secretion system effector delivery regulator TyeA-related BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 ProDom PD029314 TYEA PLASMID ACR1 SECRETION CONTROL TARGETING TYPE LSSA VP1666 TARGET 269 331 0.009 T 11-10-2018 IPR015144 Type III secretion system effector delivery regulator TyeA BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 SUPERFAMILY SSF140591 264 336 5.89E-21 T 11-10-2018 BED32_19580 b7e5ee3c70e8128f63b20d823a4998c3 337 Gene3D G3DSA:1.20.1280.80 263 336 1.9E-7 T 11-10-2018 IPR038347 TyeA superfamily BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 5 241 4.6E-90 T 11-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 SMART SM00062 22 241 2.5E-86 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 Gene3D G3DSA:3.40.190.10 26 240 8.5E-85 T 11-10-2018 BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 SMART SM00079 22 243 1.4E-5 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 Gene3D G3DSA:3.40.190.10 108 201 8.5E-85 T 11-10-2018 BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 SUPERFAMILY SSF53850 1 242 5.09E-74 T 11-10-2018 BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 45 58 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_13865 a6cf0c56694c8cdb98e425249fe13464 243 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 23 242 3.1E-71 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 Gene3D G3DSA:2.40.50.940 223 348 6.7E-26 T 11-10-2018 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 SUPERFAMILY SSF52540 4 242 2.51E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 Pfam PF00005 ABC transporter 21 162 3.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 Pfam PF08402 TOBE domain 278 347 2.0E-4 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 Gene3D G3DSA:2.40.50.140 285 339 6.7E-26 T 11-10-2018 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 Gene3D G3DSA:3.40.50.300 3 222 2.1E-63 T 11-10-2018 BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 SUPERFAMILY SSF50331 237 355 2.92E-26 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_20090 6fe25de66bf57edaeab80f4959d19159 357 SMART SM00382 29 212 4.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 Pfam PF00108 Thiolase, N-terminal domain 15 288 1.7E-62 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 ProSitePatterns PS00737 Thiolases signature 2. 382 398 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 Gene3D G3DSA:3.40.47.10 8 435 1.8E-114 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 SUPERFAMILY SSF53901 15 295 7.57E-63 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 SUPERFAMILY SSF53901 297 435 4.58E-32 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 17 434 1.0E-131 T 11-10-2018 IPR002155 Thiolase GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 95 113 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 Pfam PF02803 Thiolase, C-terminal domain 296 434 9.2E-37 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 PIRSF PIRSF000429 9 436 3.2E-122 T 11-10-2018 IPR002155 Thiolase GO:0016747 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 7 436 3.6E-253 T 11-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 2 436 69.568 T 11-10-2018 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 BED32_14935 d3c294be29e780e9d4494f81bd1ae314 436 ProSitePatterns PS00099 Thiolases active site. 417 430 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Gene3D G3DSA:3.30.565.10 1 216 1.2E-70 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Gene3D G3DSA:2.30.42.20 455 630 6.2E-68 T 11-10-2018 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Pfam PF08676 MutL C terminal dimerisation domain 455 584 2.0E-26 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Gene3D G3DSA:3.30.230.10 217 329 2.4E-42 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 SMART SM01340 212 330 5.1E-59 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 3.5E-39 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 SUPERFAMILY SSF118116 453 633 5.36E-43 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 SUPERFAMILY SSF54211 191 330 1.9E-38 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 SMART SM00853 458 593 2.4E-13 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Gene3D G3DSA:3.30.1370.100 499 587 6.2E-68 T 11-10-2018 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 632 25.958 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 SUPERFAMILY SSF55874 1 204 4.98E-55 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 120 5.8E-12 T 11-10-2018 BED32_19230 57a0a42a63b89d1cf129020e8c0d9f37 635 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 7.7E-102 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 BED32_16870 58ac49857537f779184e77cd52f6f984 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 3.9E-39 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 45.61 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 PIRSF PIRSF006205 1 398 1.3E-151 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 SUPERFAMILY SSF69055 301 395 9.29E-29 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 396 3.4E-176 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 Gene3D G3DSA:1.10.1740.10 312 398 3.0E-29 T 11-10-2018 BED32_16870 58ac49857537f779184e77cd52f6f984 398 Gene3D G3DSA:3.40.50.720 1 150 1.6E-55 T 11-10-2018 BED32_16870 58ac49857537f779184e77cd52f6f984 398 SUPERFAMILY SSF51735 2 150 2.08E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_16870 58ac49857537f779184e77cd52f6f984 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 1.0E-45 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_16870 58ac49857537f779184e77cd52f6f984 398 SUPERFAMILY SSF55347 126 274 1.9E-61 T 11-10-2018 BED32_16870 58ac49857537f779184e77cd52f6f984 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 2.5E-35 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 BED32_19005 a0cbb2b89847953c350b900c74597ab5 319 Pfam PF00892 EamA-like transporter family 161 271 1.4E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_19005 a0cbb2b89847953c350b900c74597ab5 319 Pfam PF00892 EamA-like transporter family 9 144 9.0E-29 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_19005 a0cbb2b89847953c350b900c74597ab5 319 SUPERFAMILY SSF103481 43 147 1.7E-14 T 11-10-2018 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 Gene3D G3DSA:3.30.2350.10 85 316 4.7E-71 T 11-10-2018 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 Pfam PF01479 S4 domain 18 65 1.7E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 313 9.9E-108 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 Gene3D G3DSA:3.10.290.10 2 76 4.6E-26 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 SUPERFAMILY SSF55120 77 321 3.5E-79 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 Pfam PF00849 RNA pseudouridylate synthase 92 242 2.7E-32 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 SMART SM00363 18 83 4.1E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_05045 192bd9c4a1b08728fe1456f3d5361df7 325 SUPERFAMILY SSF55174 17 69 1.6E-11 T 11-10-2018 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 SMART SM00662 23 234 1.4E-105 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 1.7E-23 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 3.9E-24 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 7.5E-24 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Gene3D G3DSA:2.170.120.12 53 177 4.2E-86 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 5.9E-113 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 SUPERFAMILY SSF47789 251 325 1.26E-25 T 11-10-2018 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 SUPERFAMILY SSF55257 6 231 1.57E-30 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.627 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 SUPERFAMILY SSF56553 53 178 2.09E-41 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 328 7.0E-36 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Gene3D G3DSA:3.30.1360.10 17 228 4.2E-86 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_02000 4b9d9ab2444a10a15a888f84a80fffbc 330 Gene3D G3DSA:1.10.150.20 244 329 1.1E-38 T 11-10-2018 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 78 131 5.0E-21 T 11-10-2018 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 74 89 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 Gene3D G3DSA:3.30.930.10 3 207 2.9E-61 T 11-10-2018 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 SUPERFAMILY SSF55681 6 208 1.24E-68 T 11-10-2018 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 Hamap MF_00013 Octanoyltransferase [lipB]. 8 209 36.742 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 PIRSF PIRSF016262 4 217 7.2E-56 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 33 206 7.8E-72 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 BED32_07390 a5295a1ceaf117715a3e6cfb6cae756f 227 Pfam PF03099 Biotin/lipoate A/B protein ligase family 65 162 2.3E-6 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 BED32_10720 472fb82d0b58dcbc33ed63b733733a2b 554 Hamap MF_01165 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase [arnT]. 3 553 43.309 T 11-10-2018 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase GO:0016763 BED32_10720 472fb82d0b58dcbc33ed63b733733a2b 554 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 11 239 5.1E-41 T 11-10-2018 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 Reactome: R-HSA-5173105 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 SUPERFAMILY SSF53383 8 401 1.75E-126 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 Gene3D G3DSA:3.90.1150.10 43 392 6.0E-139 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 TIGRFAM TIGR01822 2am3keto_CoA: glycine C-acetyltransferase 10 402 5.1E-218 T 11-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 Hamap MF_00985 2-amino-3-ketobutyrate coenzyme A ligase [kbl]. 7 400 53.679 T 11-10-2018 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase GO:0006567|GO:0008890 KEGG: 00260+2.3.1.29|Reactome: R-HSA-8849175 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 Pfam PF00155 Aminotransferase class I and II 48 391 4.6E-78 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 Gene3D G3DSA:3.40.640.10 63 301 6.0E-139 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_20950 6ef85ed2cfe4c8e04248ff549180c6df 403 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 246 255 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 308 2.2E-114 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 SUPERFAMILY SSF53328 2 203 1.22E-65 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 Gene3D G3DSA:3.40.50.170 1 205 1.2E-87 T 11-10-2018 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 Gene3D G3DSA:3.10.25.10 206 311 2.5E-39 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 Pfam PF02911 Formyl transferase, C-terminal domain 203 300 3.1E-31 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 Pfam PF00551 Formyl transferase 2 177 6.2E-51 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 132 155 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 303 36.632 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 BED32_02045 1538ec2a4edd1b659de713ba960a5443 311 SUPERFAMILY SSF50486 204 305 7.53E-37 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 BED32_14510 84123221b67988281592fa1bb3b5a6b6 438 Gene3D G3DSA:1.20.1250.20 224 416 5.2E-27 T 11-10-2018 BED32_14510 84123221b67988281592fa1bb3b5a6b6 438 Gene3D G3DSA:1.20.1250.20 2 203 4.7E-47 T 11-10-2018 BED32_14510 84123221b67988281592fa1bb3b5a6b6 438 Pfam PF07690 Major Facilitator Superfamily 17 379 2.3E-54 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_14510 84123221b67988281592fa1bb3b5a6b6 438 SUPERFAMILY SSF103473 4 415 2.75E-84 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Pfam PF02780 Transketolase, C-terminal domain 545 655 2.3E-18 T 11-10-2018 IPR033248 Transketolase, C-terminal domain BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Pfam PF02779 Transketolase, pyrimidine binding domain 354 524 2.6E-47 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Gene3D G3DSA:3.40.50.970 1 326 4.7E-136 T 11-10-2018 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Gene3D G3DSA:3.40.50.970 327 537 2.3E-85 T 11-10-2018 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 4.2E-170 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 SMART SM00861 355 525 2.6E-69 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 SUPERFAMILY SSF52518 5 330 6.96E-121 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 Gene3D G3DSA:3.40.50.920 538 664 2.0E-43 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 663 0.0 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 SUPERFAMILY SSF52922 533 664 4.71E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 SUPERFAMILY SSF52518 333 526 1.35E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_04440 d2333f7a25da7f7d58f9d5f37ac46eea 664 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_02200 a6dc6e56342f021c91f6cdae2bdc334d 432 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 31 427 0.0 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_02200 a6dc6e56342f021c91f6cdae2bdc334d 432 SUPERFAMILY SSF56935 25 432 1.28E-146 T 11-10-2018 BED32_02200 a6dc6e56342f021c91f6cdae2bdc334d 432 Pfam PF02264 LamB porin 27 432 6.4E-144 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_02200 a6dc6e56342f021c91f6cdae2bdc334d 432 Hamap MF_01301 Maltoporin [lamB]. 3 432 43.084 T 11-10-2018 IPR023738 Maltoporin GO:0009279|GO:0015481|GO:0015768|GO:0042956|GO:0042958 BED32_02200 a6dc6e56342f021c91f6cdae2bdc334d 432 Gene3D G3DSA:2.40.170.10 25 432 2.9E-170 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 BED32_11505 6feec4d326219cb23ed27058af761092 393 SUPERFAMILY SSF52540 1 373 3.24E-25 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11505 6feec4d326219cb23ed27058af761092 393 Pfam PF13175 AAA ATPase domain 1 46 1.7E-8 T 11-10-2018 BED32_11505 6feec4d326219cb23ed27058af761092 393 Gene3D G3DSA:3.40.50.300 231 381 6.6E-9 T 11-10-2018 BED32_11505 6feec4d326219cb23ed27058af761092 393 Gene3D G3DSA:3.40.50.300 1 101 2.9E-10 T 11-10-2018 BED32_11505 6feec4d326219cb23ed27058af761092 393 PIRSF PIRSF029347 1 393 4.8E-134 T 11-10-2018 IPR014555 RecF-like BED32_11505 6feec4d326219cb23ed27058af761092 393 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 206 358 2.8E-15 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_09560 78e128c9a57d903485408e4878f26b0e 129 SMART SM00448 6 120 3.4E-35 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09560 78e128c9a57d903485408e4878f26b0e 129 Pfam PF00072 Response regulator receiver domain 9 120 6.0E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09560 78e128c9a57d903485408e4878f26b0e 129 SUPERFAMILY SSF52172 5 125 3.42E-36 T 11-10-2018 IPR011006 CheY-like superfamily BED32_09560 78e128c9a57d903485408e4878f26b0e 129 Gene3D G3DSA:3.40.50.2300 2 129 2.1E-38 T 11-10-2018 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PIRSF PIRSF001369 37 426 1.4E-173 T 11-10-2018 IPR024176 Citrate synthase, bacterial-type BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 SUPERFAMILY SSF48256 3 421 8.24E-168 T 11-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 13 420 1.2E-236 T 11-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 Gene3D G3DSA:2.20.28.60 1 49 9.7E-19 T 11-10-2018 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 Gene3D G3DSA:1.10.230.10 267 375 3.9E-152 T 11-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 295 315 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 378 392 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 218 233 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 240 268 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 164 177 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 PRINTS PR00143 Citrate synthase signature 358 374 7.1E-56 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 Gene3D G3DSA:1.10.580.10 56 409 3.9E-152 T 11-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 ProSitePatterns PS00480 Citrate synthase signature. 302 314 - T 11-10-2018 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 BED32_07735 9c857fc5314421e7f107fc78f3c2ccba 426 Pfam PF00285 Citrate synthase, C-terminal domain 45 409 7.7E-133 T 11-10-2018 IPR002020 Citrate synthase GO:0046912 BED32_18795 389608882c9f860de0e9474bdd2d93e2 150 Hamap MF_00764 UPF0306 protein YhbP [yhbP]. 9 146 34.856 T 11-10-2018 IPR011194 Uncharacterised protein family UPF0306 BED32_18795 389608882c9f860de0e9474bdd2d93e2 150 Gene3D G3DSA:2.30.110.10 2 146 6.3E-9 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BED32_18795 389608882c9f860de0e9474bdd2d93e2 150 SUPERFAMILY SSF50475 13 146 3.02E-13 T 11-10-2018 BED32_18795 389608882c9f860de0e9474bdd2d93e2 150 PIRSF PIRSF009554 6 150 1.1E-61 T 11-10-2018 IPR011194 Uncharacterised protein family UPF0306 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 89 2.3E-8 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 12 331 7.5E-118 T 11-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 SMART SM00829 14 331 5.5E-10 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 SUPERFAMILY SSF50129 16 143 2.13E-30 T 11-10-2018 IPR011032 GroES-like superfamily BED32_18310 4215c5e85d4114275325fedb62b1d495 333 Gene3D G3DSA:3.40.50.720 127 272 5.0E-95 T 11-10-2018 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 Gene3D G3DSA:3.90.180.10 26 330 5.0E-95 T 11-10-2018 BED32_18310 4215c5e85d4114275325fedb62b1d495 333 SUPERFAMILY SSF51735 117 281 1.77E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_18310 4215c5e85d4114275325fedb62b1d495 333 Pfam PF13602 Zinc-binding dehydrogenase 192 331 8.6E-20 T 11-10-2018 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 SMART SM00354 5 75 1.6E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 SUPERFAMILY SSF53822 62 317 1.71E-51 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 Gene3D G3DSA:1.10.260.40 1 61 1.0E-15 T 11-10-2018 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 Gene3D G3DSA:3.40.50.2300 67 309 4.1E-57 T 11-10-2018 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 11-10-2018 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 Gene3D G3DSA:3.40.50.2300 161 292 4.1E-57 T 11-10-2018 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 SUPERFAMILY SSF47413 4 53 9.64E-12 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 50 1.7E-17 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14520 e75f5cf6aefe0fbe4827077f630687b4 330 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 311 1.2E-23 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Pfam PF03412 Peptidase C39 family 8 133 3.9E-23 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Gene3D G3DSA:3.40.50.300 476 710 3.5E-63 T 11-10-2018 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Gene3D G3DSA:3.90.70.10 16 140 1.7E-23 T 11-10-2018 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Pfam PF00005 ABC transporter 500 649 4.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Pfam PF00664 ABC transporter transmembrane region 171 430 6.6E-11 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 SMART SM00382 509 697 8.4E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 SUPERFAMILY SSF52540 473 703 4.28E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 ProSitePatterns PS00211 ABC transporters family signature. 621 635 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 SUPERFAMILY SSF90123 167 447 1.7E-32 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_04720 7c72a2c52b45b319f8d9c4610c73e2c8 716 Gene3D G3DSA:1.20.1560.10 162 448 2.5E-25 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_20235 9b4b423c5a2d6afe4f7f6774af931ad7 226 Pfam PF02592 Putative vitamin uptake transporter 43 199 1.9E-33 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BED32_20235 9b4b423c5a2d6afe4f7f6774af931ad7 226 Hamap MF_02088 Probable queuosine precursor transporter. 7 217 15.409 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BED32_20235 9b4b423c5a2d6afe4f7f6774af931ad7 226 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 12 205 3.2E-62 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 BED32_00135 cabdace9bac4c2a2d49afcc071308e1a 181 Pfam PF13091 PLD-like domain 48 171 7.7E-24 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BED32_00135 cabdace9bac4c2a2d49afcc071308e1a 181 SMART SM00155 115 142 8.6E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BED32_00135 cabdace9bac4c2a2d49afcc071308e1a 181 SUPERFAMILY SSF56024 34 176 1.05E-32 T 11-10-2018 BED32_00135 cabdace9bac4c2a2d49afcc071308e1a 181 Gene3D G3DSA:3.30.870.10 28 181 5.3E-40 T 11-10-2018 BED32_15470 53ae394ccee839d3d1ebb67a34dae68a 152 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 7.4E-51 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 BED32_15470 53ae394ccee839d3d1ebb67a34dae68a 152 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.954 T 11-10-2018 IPR003791 Protein of unknown function UPF0178 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 150 174 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 89 101 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 296 308 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 185 202 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 PRINTS PR00834 HtrA/DegQ protease family signature 110 130 2.6E-46 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 SUPERFAMILY SSF50156 239 346 3.15E-20 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 SMART SM00228 256 338 3.5E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 349 7.5E-156 T 11-10-2018 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 Gene3D G3DSA:2.30.42.10 257 351 2.9E-19 T 11-10-2018 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 Pfam PF13180 PDZ domain 278 346 1.6E-12 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 Gene3D G3DSA:2.40.10.10 141 256 5.3E-39 T 11-10-2018 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 SUPERFAMILY SSF50494 45 253 2.08E-58 T 11-10-2018 IPR009003 Peptidase S1, PA clan BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 Gene3D G3DSA:2.40.10.10 36 140 1.1E-27 T 11-10-2018 BED32_02995 131b2cd9d69c8a3cebfb89512604c306 362 Pfam PF13365 Trypsin-like peptidase domain 80 214 1.1E-26 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 SUPERFAMILY SSF55021 304 381 7.56E-23 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 PIRSF PIRSF000727 1 817 0.0 T 11-10-2018 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+1.1.1.3+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+1.1.1.3+2.7.2.4|KEGG: 00300+1.1.1.3+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 605 6.3E-27 T 11-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Pfam PF00696 Amino acid kinase family 2 284 2.3E-46 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Gene3D G3DSA:3.40.1160.10 3 295 5.8E-85 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_18230 199153941761ca6e3ea7cfa333521010 819 SUPERFAMILY SSF55021 384 476 7.53E-22 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Pfam PF13840 ACT domain 395 453 9.1E-8 T 11-10-2018 IPR027795 CASTOR, ACT domain BED32_18230 199153941761ca6e3ea7cfa333521010 819 Pfam PF00742 Homoserine dehydrogenase 614 810 8.8E-49 T 11-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BED32_18230 199153941761ca6e3ea7cfa333521010 819 SUPERFAMILY SSF51735 464 636 2.5E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_18230 199153941761ca6e3ea7cfa333521010 819 SUPERFAMILY SSF53633 1 297 7.02E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_18230 199153941761ca6e3ea7cfa333521010 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 9.5E-144 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Gene3D G3DSA:3.30.2130.10 304 464 1.2E-47 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 11-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 BED32_18230 199153941761ca6e3ea7cfa333521010 819 SUPERFAMILY SSF55347 614 797 8.5E-52 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Gene3D G3DSA:3.30.360.10 625 795 1.3E-118 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Gene3D G3DSA:3.40.50.720 466 811 1.3E-118 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Gene3D G3DSA:1.20.120.1320 41 142 5.8E-85 T 11-10-2018 BED32_18230 199153941761ca6e3ea7cfa333521010 819 Pfam PF01842 ACT domain 324 377 9.0E-9 T 11-10-2018 IPR002912 ACT domain BED32_18230 199153941761ca6e3ea7cfa333521010 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 SUPERFAMILY SSF52374 3 647 1.03E-136 T 11-10-2018 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 640 2.4E-224 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 SUPERFAMILY SSF50677 204 403 4.71E-56 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 843 2.9E-298 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 929 21.391 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Gene3D G3DSA:1.10.730.20 640 929 3.8E-92 T 11-10-2018 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 SUPERFAMILY SSF47323 652 929 5.98E-78 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Gene3D G3DSA:3.40.50.620 25 629 1.6E-232 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_18145 09387a5742d9511203ef122fa0a69a97 938 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Pfam PF08264 Anticodon-binding domain of tRNA 685 840 1.6E-29 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Pfam PF06827 Zinc finger found in FPG and IleRS 898 926 8.6E-10 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 Gene3D G3DSA:3.90.740.10 195 408 1.6E-232 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 401 416 4.8E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 526 539 4.8E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 4.8E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 238 261 4.8E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_18145 09387a5742d9511203ef122fa0a69a97 938 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 561 570 4.8E-32 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 BED32_07285 333fbe1bf7a4c7a671b9fe0d73b2fba4 126 SUPERFAMILY SSF51306 1 113 7.32E-20 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_07285 333fbe1bf7a4c7a671b9fe0d73b2fba4 126 Gene3D G3DSA:2.10.109.10 2 116 1.1E-30 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 SUPERFAMILY SSF52009 125 246 5.23E-37 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 7.2E-23 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 SUPERFAMILY SSF47831 23 143 1.2E-33 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 1.8E-29 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.5E-31 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.5E-31 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.5E-31 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.5E-31 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 252 541 4.2E-125 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 PIRSF PIRSF000732 1 574 4.0E-218 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Gene3D G3DSA:3.50.30.10 4 233 5.8E-82 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 SUPERFAMILY SSF51621 252 549 5.5E-110 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Gene3D G3DSA:3.20.20.60 234 575 9.0E-128 T 11-10-2018 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 Gene3D G3DSA:1.10.274.10 21 146 5.8E-82 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BED32_15355 f76f3e278336489b8b2ddadca542730b 575 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 3.9E-258 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Gene3D G3DSA:1.10.10.1020 1 114 5.3E-35 T 11-10-2018 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Pfam PF13538 UvrD-like helicase C-terminal domain 558 604 1.6E-15 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Gene3D G3DSA:3.40.50.300 115 377 6.2E-76 T 11-10-2018 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Gene3D G3DSA:3.40.50.300 503 618 1.2E-27 T 11-10-2018 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Gene3D G3DSA:3.40.50.300 387 502 3.7E-27 T 11-10-2018 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 5 629 9.6E-189 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 SUPERFAMILY SSF52540 298 629 1.15E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Pfam PF13604 AAA domain 173 333 5.0E-32 T 11-10-2018 BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 SUPERFAMILY SSF52540 7 382 4.22E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17020 cca85fb8ced33d5fd5449b8e905507c0 633 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 627 52.359 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 SUPERFAMILY SSF50447 245 331 7.51E-23 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 86 101 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 22 478 53.192 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 Gene3D G3DSA:2.40.30.10 245 332 5.7E-25 T 11-10-2018 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 SUPERFAMILY SSF50465 338 438 6.71E-29 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 Pfam PF00009 Elongation factor Tu GTP binding domain 29 234 9.5E-45 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 37 217 1.1E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 Gene3D G3DSA:3.40.50.300 9 243 1.6E-72 T 11-10-2018 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 PRINTS PR00315 GTP-binding elongation factor signature 166 175 8.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 PRINTS PR00315 GTP-binding elongation factor signature 113 123 8.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 PRINTS PR00315 GTP-binding elongation factor signature 129 140 8.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 PRINTS PR00315 GTP-binding elongation factor signature 32 45 8.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 PRINTS PR00315 GTP-binding elongation factor signature 93 101 8.4E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 31 437 2.5E-204 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 SUPERFAMILY SSF52540 24 238 2.3E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04595 4b2ab5c77c5980dd41f57fa4a7cadb7f 478 Gene3D G3DSA:2.40.30.10 335 438 8.6E-29 T 11-10-2018 BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 SUPERFAMILY SSF51338 3 574 6.37E-18 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 Pfam PF07969 Amidohydrolase family 55 573 3.4E-74 T 11-10-2018 IPR013108 Amidohydrolase 3 BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 Gene3D G3DSA:3.20.20.140 67 532 7.9E-114 T 11-10-2018 BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 SUPERFAMILY SSF51556 66 533 1.74E-28 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 Gene3D G3DSA:3.10.310.70 85 200 7.9E-114 T 11-10-2018 BED32_15155 cd44999e29b625fa0441a96a00acaaf3 576 Gene3D G3DSA:2.30.40.10 13 549 7.9E-114 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 Gene3D G3DSA:2.40.170.20 156 678 1.2E-104 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 33 678 6.3E-142 T 11-10-2018 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0015232|GO:0015886|GO:0019867 BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 Gene3D G3DSA:2.170.130.10 33 155 6.1E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 SUPERFAMILY SSF56935 33 678 4.4E-88 T 11-10-2018 BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 33 678 3.9E-110 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 Pfam PF00593 TonB dependent receptor 195 676 3.9E-35 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_10760 20f7dd074b1dc57f2333387e665dfe99 678 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 150 5.8E-23 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_20320 cbd414c74ed07ebf1e701d48db17886b 410 Gene3D G3DSA:3.40.50.12020 2 175 9.9E-58 T 11-10-2018 BED32_20320 cbd414c74ed07ebf1e701d48db17886b 410 Hamap MF_00677 UPF0261 protein . 2 407 52.513 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 BED32_20320 cbd414c74ed07ebf1e701d48db17886b 410 PIRSF PIRSF033271 1 408 1.0E-195 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 BED32_20320 cbd414c74ed07ebf1e701d48db17886b 410 Gene3D G3DSA:3.40.50.12030 188 407 8.4E-85 T 11-10-2018 BED32_20320 cbd414c74ed07ebf1e701d48db17886b 410 Pfam PF06792 Uncharacterised protein family (UPF0261) 4 404 1.3E-159 T 11-10-2018 IPR008322 Uncharacterised protein family UPF0261 BED32_12705 6bf953825696fd8886cb07adb8c0ad57 265 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 265 2.9E-124 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BED32_12705 6bf953825696fd8886cb07adb8c0ad57 265 Pfam PF03609 PTS system sorbose-specific iic component 6 237 9.5E-75 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BED32_09360 585923ec95ada167affd350ab80967f4 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.1E-21 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 SMART SM00421 147 204 7.7E-25 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 SMART SM00448 3 116 6.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09360 585923ec95ada167affd350ab80967f4 210 SUPERFAMILY SSF52172 2 131 9.96E-31 T 11-10-2018 IPR011006 CheY-like superfamily BED32_09360 585923ec95ada167affd350ab80967f4 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 SUPERFAMILY SSF46894 141 210 1.36E-20 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 Pfam PF00072 Response regulator receiver domain 5 113 1.2E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09360 585923ec95ada167affd350ab80967f4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 5.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 5.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 5.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09360 585923ec95ada167affd350ab80967f4 210 Gene3D G3DSA:3.40.50.12740 4 210 2.9E-54 T 11-10-2018 BED32_10000 ea714558d7c2d6b55e3de291b3b483ed 265 Gene3D G3DSA:3.30.420.10 103 251 1.7E-14 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_10000 ea714558d7c2d6b55e3de291b3b483ed 265 Pfam PF00665 Integrase core domain 107 219 2.3E-22 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_10000 ea714558d7c2d6b55e3de291b3b483ed 265 SUPERFAMILY SSF53098 104 260 9.1E-38 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00325 435651f7e1800e850e83faf31d0b8895 165 TIGRFAM TIGR02509 type_III_yopR: type III secretion effector, YopR family 34 163 1.6E-54 T 11-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 BED32_00325 435651f7e1800e850e83faf31d0b8895 165 SUPERFAMILY SSF140591 43 145 4.71E-41 T 11-10-2018 BED32_00325 435651f7e1800e850e83faf31d0b8895 165 Pfam PF09025 YopR, type III needle-polymerisation regulator 30 164 2.8E-58 T 11-10-2018 IPR013349 Type III secretion system effector YopR GO:0009405|GO:0030254|GO:0030257 BED32_00325 435651f7e1800e850e83faf31d0b8895 165 Gene3D G3DSA:1.10.10.1000 38 149 1.2E-58 T 11-10-2018 BED32_09765 4617910d1dd7ef4de46b0cdd3f6782b4 388 ProSitePatterns PS00336 Beta-lactamase class-C active site. 85 92 - T 11-10-2018 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 BED32_09765 4617910d1dd7ef4de46b0cdd3f6782b4 388 Gene3D G3DSA:3.40.710.10 27 387 2.4E-121 T 11-10-2018 BED32_09765 4617910d1dd7ef4de46b0cdd3f6782b4 388 SUPERFAMILY SSF56601 31 387 6.18E-98 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_09765 4617910d1dd7ef4de46b0cdd3f6782b4 388 Pfam PF00144 Beta-lactamase 38 386 7.4E-78 T 11-10-2018 IPR001466 Beta-lactamase-related BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 390 1.5E-89 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 6.0E-29 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 SUPERFAMILY SSF54211 9 169 6.07E-28 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 SUPERFAMILY SSF52540 189 502 3.41E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 SMART SM00382 210 390 1.6E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 Gene3D G3DSA:3.40.50.300 187 499 7.6E-57 T 11-10-2018 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 3.6E-7 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 3.6E-7 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 3.6E-7 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 3.6E-7 T 11-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 3.2E-44 T 11-10-2018 BED32_00785 2cd8fdc174372369e641eeb1eba090a5 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 9.0E-212 T 11-10-2018 IPR004482 Mg chelatase-related protein BED32_20975 172ac93d88cf9016235cefae9e4a7ec6 260 Gene3D G3DSA:3.90.550.10 1 210 2.4E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_20975 172ac93d88cf9016235cefae9e4a7ec6 260 SUPERFAMILY SSF53448 3 148 2.91E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_20975 172ac93d88cf9016235cefae9e4a7ec6 260 Pfam PF00535 Glycosyl transferase family 2 8 134 2.6E-20 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 Gene3D G3DSA:1.20.1510.10 8 206 3.9E-67 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 Gene3D G3DSA:3.30.70.1350 207 290 4.3E-31 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 SUPERFAMILY SSF160240 209 287 1.96E-23 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 SUPERFAMILY SSF161111 9 207 2.22E-51 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 6.1E-23 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 Pfam PF01545 Cation efflux family 16 206 5.5E-45 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 Hamap MF_01425 Ferrous-iron efflux pump FieF [fieF]. 1 300 61.366 T 11-10-2018 IPR023783 Cation efflux pump FieF GO:0006829|GO:0015684|GO:0016021|GO:0046873 BED32_20865 620e7d0d16f8077be8df4bf35460da67 300 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 11 286 7.2E-72 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 SMART SM00359 276 359 9.2E-20 T 11-10-2018 IPR002478 PUA domain GO:0003723 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PIRSF PIRSF000729 1 367 1.2E-140 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 Gene3D G3DSA:2.30.130.10 266 367 1.3E-28 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 263 35.882 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 SUPERFAMILY SSF53633 6 256 1.96E-65 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 Gene3D G3DSA:3.40.1160.10 2 258 1.4E-87 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 2.0E-56 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 2.0E-56 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 2.0E-56 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 2.0E-56 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 2.0E-56 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 365 2.0E-151 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 Pfam PF00696 Amino acid kinase family 6 234 3.1E-44 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 Pfam PF01472 PUA domain 276 350 4.5E-20 T 11-10-2018 IPR002478 PUA domain GO:0003723 BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 SUPERFAMILY SSF88697 276 366 8.84E-23 T 11-10-2018 IPR015947 PUA-like superfamily BED32_05755 3692f790fa15234b3d5f788da9ea2901 367 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 BED32_03115 1cf0798825cb70857ceddecf1d576d6f 189 SUPERFAMILY SSF53041 1 139 3.92E-42 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 BED32_03115 1cf0798825cb70857ceddecf1d576d6f 189 SMART SM00857 3 140 1.2E-48 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_03115 1cf0798825cb70857ceddecf1d576d6f 189 Pfam PF00239 Resolvase, N terminal domain 4 139 2.9E-41 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_03115 1cf0798825cb70857ceddecf1d576d6f 189 Gene3D G3DSA:3.40.50.1390 1 123 3.4E-41 T 11-10-2018 BED32_03115 1cf0798825cb70857ceddecf1d576d6f 189 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 Pfam PF03466 LysR substrate binding domain 89 294 5.1E-40 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 Gene3D G3DSA:3.40.190.10 90 290 1.7E-30 T 11-10-2018 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 Gene3D G3DSA:3.40.190.10 165 269 1.7E-30 T 11-10-2018 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 6.5E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 Gene3D G3DSA:1.10.10.10 1 83 1.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.2E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 SUPERFAMILY SSF53850 89 297 1.57E-35 T 11-10-2018 BED32_00825 fc0247f7622ef461a0e61d168f246d97 298 SUPERFAMILY SSF46785 1 111 4.49E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 4.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 4.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 4.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.995 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.4E-26 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 Pfam PF01632 Ribosomal protein L35 2 60 1.4E-22 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 Gene3D G3DSA:2.40.50.530 1 65 4.8E-19 T 11-10-2018 BED32_10650 dedc5837c42fa6f23456f303a912e8c1 65 SUPERFAMILY SSF143034 2 64 3.14E-22 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 15 402 71.531 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 SUPERFAMILY SSF53383 17 400 9.93E-126 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 PIRSF PIRSF000521 173 402 1.1E-35 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 PIRSF PIRSF000521 27 156 1.9E-7 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 Pfam PF00202 Aminotransferase class-III 24 399 3.2E-135 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 Gene3D G3DSA:3.40.640.10 59 304 2.2E-155 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 403 2.8E-207 T 11-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 Gene3D G3DSA:3.90.1150.10 29 391 2.2E-155 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_01710 4ddfb8f3fe0587384196fe35765f5e37 405 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 1.1E-151 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 BED32_08990 268889e18b32e37f91f4624c8c7296b2 241 Gene3D G3DSA:3.30.950.10 111 241 1.6E-52 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 BED32_08990 268889e18b32e37f91f4624c8c7296b2 241 Gene3D G3DSA:3.40.1010.10 1 110 5.0E-29 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 BED32_08990 268889e18b32e37f91f4624c8c7296b2 241 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 2 239 7.2E-103 T 11-10-2018 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 BED32_08990 268889e18b32e37f91f4624c8c7296b2 241 SUPERFAMILY SSF53790 1 239 7.85E-54 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 BED32_08990 268889e18b32e37f91f4624c8c7296b2 241 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 1 208 1.1E-35 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 BED32_18675 2db2c35f1e8498afc7ad8380b324701c 152 Gene3D G3DSA:2.60.120.370 1 152 8.5E-41 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily BED32_18675 2db2c35f1e8498afc7ad8380b324701c 152 Pfam PF04074 Domain of unknown function (DUF386) 1 149 1.2E-44 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_18675 2db2c35f1e8498afc7ad8380b324701c 152 SUPERFAMILY SSF51197 1 151 2.72E-44 T 11-10-2018 BED32_18675 2db2c35f1e8498afc7ad8380b324701c 152 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 1.4E-51 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 SMART SM00091 3 73 68.0 T 11-10-2018 IPR000014 PAS domain BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 SMART SM00091 133 202 2.9E-5 T 11-10-2018 IPR000014 PAS domain BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 SMART SM00267 246 414 1.8E-58 T 11-10-2018 IPR000160 GGDEF domain BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 Pfam PF08448 PAS fold 152 248 2.7E-8 T 11-10-2018 IPR013656 PAS fold-4 BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 Gene3D G3DSA:3.30.450.20 138 254 3.6E-17 T 11-10-2018 BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 SUPERFAMILY SSF55785 153 254 6.93E-17 T 11-10-2018 IPR035965 PAS domain superfamily BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 Gene3D G3DSA:3.30.70.270 255 413 8.5E-53 T 11-10-2018 BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 SUPERFAMILY SSF55073 262 412 6.67E-47 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 253 412 4.7E-47 T 11-10-2018 IPR000160 GGDEF domain BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 130 253 1.8E-15 T 11-10-2018 IPR000014 PAS domain BED32_17260 2b86cbae12cd303853bb863e4e1d2619 414 Pfam PF00990 Diguanylate cyclase, GGDEF domain 258 410 7.9E-46 T 11-10-2018 IPR000160 GGDEF domain BED32_02240 272690f55b6a6421a35be36ce0c684ad 69 Gene3D G3DSA:1.10.1470.10 1 69 1.8E-35 T 11-10-2018 IPR036629 YjbJ superfamily BED32_02240 272690f55b6a6421a35be36ce0c684ad 69 PIRSF PIRSF039008 1 66 9.4E-33 T 11-10-2018 IPR026042 Stress response protein YjbJ BED32_02240 272690f55b6a6421a35be36ce0c684ad 69 Pfam PF05532 CsbD-like 4 56 7.8E-23 T 11-10-2018 IPR008462 CsbD-like domain BED32_02240 272690f55b6a6421a35be36ce0c684ad 69 SUPERFAMILY SSF69047 1 69 9.42E-28 T 11-10-2018 IPR036629 YjbJ superfamily BED32_12615 f2fb6d34020efca1d46be38cdc843c22 128 Pfam PF04234 CopC domain 31 127 5.4E-24 T 11-10-2018 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 BED32_12615 f2fb6d34020efca1d46be38cdc843c22 128 Gene3D G3DSA:2.60.40.1220 30 128 5.4E-27 T 11-10-2018 BED32_12615 f2fb6d34020efca1d46be38cdc843c22 128 SUPERFAMILY SSF81296 30 128 5.46E-27 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_08030 fd9a69b75d25aa59268eee932a1171ae 150 SUPERFAMILY SSF54690 5 150 4.58E-54 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BED32_08030 fd9a69b75d25aa59268eee932a1171ae 150 Gene3D G3DSA:3.90.1170.40 1 150 4.3E-55 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BED32_08030 fd9a69b75d25aa59268eee932a1171ae 150 Pfam PF02391 MoaE protein 14 121 2.1E-35 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 332 3.1E-84 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 620 634 1.8E-5 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 377 399 1.8E-5 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 Gene3D G3DSA:3.20.20.70 3 370 1.4E-122 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 Gene3D G3DSA:3.40.50.720 376 667 3.6E-117 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 SUPERFAMILY SSF51905 461 651 1.46E-23 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 377 642 4.7E-21 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 SUPERFAMILY SSF51395 3 363 6.28E-110 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 Gene3D G3DSA:3.50.50.60 470 626 3.6E-117 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 498 516 4.2E-11 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 619 635 4.2E-11 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 4.2E-11 T 11-10-2018 BED32_03315 f7c7e981f0178dfea76bd3362966ab58 673 SUPERFAMILY SSF51971 334 518 7.06E-40 T 11-10-2018 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 Gene3D G3DSA:3.40.1260.20 402 488 6.3E-6 T 11-10-2018 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 SMART SM00316 37 122 2.1E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 3.3E-174 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 Gene3D G3DSA:2.40.50.140 31 127 4.1E-31 T 11-10-2018 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.2E-101 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 SUPERFAMILY SSF50249 39 128 6.0E-19 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_02485 ae88987d64f814515cfb3b364d8ef1dc 489 Pfam PF00575 S1 RNA binding domain 38 109 3.2E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 104 118 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 SMART SM00363 7 63 1.4E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 Gene3D G3DSA:3.30.70.1560 134 207 1.9E-55 T 11-10-2018 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 Pfam PF00849 RNA pseudouridylate synthase 69 195 3.0E-14 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 Gene3D G3DSA:3.10.290.10 1 62 4.4E-22 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 73 225 1.6E-51 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 SUPERFAMILY SSF55120 69 229 1.7E-36 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 Pfam PF01479 S4 domain 8 52 1.4E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 Gene3D G3DSA:3.30.70.580 70 228 1.9E-55 T 11-10-2018 BED32_10115 faf27f5c0f51dbf057ae513387431bbf 290 SUPERFAMILY SSF55174 7 62 9.92E-13 T 11-10-2018 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Gene3D G3DSA:3.30.450.20 9 112 1.1E-16 T 11-10-2018 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Pfam PF00512 His Kinase A (phospho-acceptor) domain 131 190 3.3E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Gene3D G3DSA:3.30.565.10 192 348 8.9E-42 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SMART SM00388 129 194 1.6E-14 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SUPERFAMILY SSF47384 121 190 1.28E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Pfam PF00989 PAS fold 12 98 6.2E-5 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SMART SM00091 7 75 7.6E-4 T 11-10-2018 IPR000014 PAS domain BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SMART SM00387 233 349 1.6E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 4.0E-15 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 Gene3D G3DSA:1.10.287.130 116 191 4.6E-14 T 11-10-2018 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SUPERFAMILY SSF55874 198 346 4.06E-35 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 SUPERFAMILY SSF55785 12 97 1.14E-5 T 11-10-2018 IPR035965 PAS domain superfamily BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 346 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_21260 1d8e8a347a87cbb34de482d517d62119 349 PRINTS PR00344 Bacterial sensor protein C-terminal signature 281 295 2.6E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_09745 77925d5735924202e3411425714eefde 160 Gene3D G3DSA:1.10.530.40 1 160 4.2E-46 T 11-10-2018 BED32_09745 77925d5735924202e3411425714eefde 160 Pfam PF00959 Phage lysozyme 46 150 2.5E-23 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 BED32_09745 77925d5735924202e3411425714eefde 160 SUPERFAMILY SSF53955 7 160 1.48E-49 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_12320 10eb2e07f77d75084e3c8bc51a2832de 524 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 524 363.194 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 BED32_12320 10eb2e07f77d75084e3c8bc51a2832de 524 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 511 7.0E-277 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 BED32_12320 10eb2e07f77d75084e3c8bc51a2832de 524 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 512 2.5E-277 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 BED32_06350 97fc429b1121762a455ace28071ae4da 478 Pfam PF02719 Polysaccharide biosynthesis protein 121 414 4.0E-129 T 11-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain BED32_06350 97fc429b1121762a455ace28071ae4da 478 SUPERFAMILY SSF51735 119 428 1.3E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_06350 97fc429b1121762a455ace28071ae4da 478 Gene3D G3DSA:3.40.50.720 116 446 4.2E-114 T 11-10-2018 BED32_06350 97fc429b1121762a455ace28071ae4da 478 Gene3D G3DSA:3.40.50.720 1 102 5.4E-24 T 11-10-2018 BED32_06350 97fc429b1121762a455ace28071ae4da 478 SUPERFAMILY SSF53335 6 166 6.48E-9 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_00925 4e34ab904466177f3ddc596f3c711f34 468 Gene3D G3DSA:2.160.20.10 61 345 3.9E-66 T 11-10-2018 IPR012334 Pectin lyase fold BED32_00925 4e34ab904466177f3ddc596f3c711f34 468 SUPERFAMILY SSF51126 68 338 2.48E-40 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_00925 4e34ab904466177f3ddc596f3c711f34 468 SMART SM00912 69 186 3.6E-33 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_00925 4e34ab904466177f3ddc596f3c711f34 468 Pfam PF05860 haemagglutination activity domain 64 185 2.3E-25 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_00925 4e34ab904466177f3ddc596f3c711f34 468 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 88 181 4.7E-17 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Pfam PF12631 MnmE helical domain 123 451 8.1E-61 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Gene3D G3DSA:3.30.1360.120 1 121 5.1E-38 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 370 6.7E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 454 1.5E-100 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 454 33.203 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 SUPERFAMILY SSF116878 121 454 2.35E-51 T 11-10-2018 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Gene3D G3DSA:1.20.120.430 122 454 1.4E-103 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Pfam PF01926 50S ribosome-binding GTPase 218 307 1.6E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 SUPERFAMILY SSF52540 72 372 3.98E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 3.5E-34 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 BED32_21585 05e5d16d45ad2d27bac0606ebbbed6b7 454 Gene3D G3DSA:3.40.50.300 217 382 1.4E-103 T 11-10-2018 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 ProSitePatterns PS01275 Elongation factor P signature. 154 173 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Gene3D G3DSA:2.40.50.140 132 189 9.3E-20 T 11-10-2018 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 PIRSF PIRSF005901 1 190 1.1E-59 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 SUPERFAMILY SSF50249 132 189 1.88E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 189 7.4E-97 T 11-10-2018 IPR011897 Translation elongation factor P-like, YeiP BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Pfam PF09285 Elongation factor P, C-terminal 133 188 1.1E-17 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 1.2E-13 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Gene3D G3DSA:2.30.30.30 1 65 3.1E-14 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 SUPERFAMILY SSF50249 67 130 4.71E-11 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 SUPERFAMILY SSF50104 1 64 8.42E-10 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 SMART SM01185 69 125 7.3E-14 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 SMART SM00841 133 188 3.3E-24 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 189 42.998 T 11-10-2018 IPR011897 Translation elongation factor P-like, YeiP BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Gene3D G3DSA:2.40.50.140 66 130 2.2E-15 T 11-10-2018 BED32_14125 7a4d3b2a746bcc4acad8288df772ca49 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 61 2.4E-15 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like BED32_14725 bd1ef672ab46aa9478c6e60f189a20b0 228 SUPERFAMILY SSF161098 8 205 1.57E-39 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14725 bd1ef672ab46aa9478c6e60f189a20b0 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 114 5.3E-20 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_14725 bd1ef672ab46aa9478c6e60f189a20b0 228 Gene3D G3DSA:1.10.3720.10 1 223 1.1E-50 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14725 bd1ef672ab46aa9478c6e60f189a20b0 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 28 220 2.0E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 234 503 23.319 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Gene3D G3DSA:3.40.50.10260 15 225 2.2E-53 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 SUPERFAMILY SSF53613 233 499 2.12E-72 T 11-10-2018 IPR029056 Ribokinase-like BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 19 220 21.456 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Pfam PF03853 YjeF-related protein N-terminus 40 199 1.0E-40 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 20 220 2.3E-48 T 11-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 SUPERFAMILY SSF64153 16 256 5.23E-59 T 11-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Pfam PF01256 Carbohydrate kinase 258 496 1.3E-68 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 PIRSF PIRSF017184 15 504 6.2E-143 T 11-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 233 499 6.2E-79 T 11-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 BED32_19245 5d9c4046c453b599decbb9d9e502ecb5 504 Gene3D G3DSA:3.40.1190.20 227 499 1.0E-83 T 11-10-2018 IPR029056 Ribokinase-like BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 214 229 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 51 69 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 Gene3D G3DSA:3.20.20.10 33 279 3.1E-143 T 11-10-2018 IPR029066 PLP-binding barrel BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 5.4E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 51 69 5.4E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 376 389 5.4E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 5.4E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 71 83 5.4E-20 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 418 1.5E-127 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 Gene3D G3DSA:2.40.37.10 22 416 3.1E-143 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 69 86 2.8E-26 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 386 408 2.8E-26 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 293 311 2.8E-26 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 PRINTS PR01181 Diaminopimelate decarboxylase signature 157 166 2.8E-26 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 48 275 1.3E-56 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 SUPERFAMILY SSF51419 25 277 5.38E-55 T 11-10-2018 IPR029066 PLP-binding barrel BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 419 38.217 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 SUPERFAMILY SSF50621 251 419 1.17E-57 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_17120 7a2c024d1ff29d964be1e215b9509575 420 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 276 376 7.9E-25 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 BED32_14535 990f6edc70c6872bed298ca3dcebe1ba 155 Gene3D G3DSA:2.60.120.370 1 154 1.3E-36 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily BED32_14535 990f6edc70c6872bed298ca3dcebe1ba 155 SUPERFAMILY SSF51197 1 154 1.46E-37 T 11-10-2018 BED32_14535 990f6edc70c6872bed298ca3dcebe1ba 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 1.1E-33 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_14535 990f6edc70c6872bed298ca3dcebe1ba 155 Pfam PF04074 Domain of unknown function (DUF386) 1 150 5.1E-35 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 Gene3D G3DSA:1.10.10.10 1 63 3.6E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 SMART SM00344 12 121 7.5E-55 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 58 5.0E-21 T 11-10-2018 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 Gene3D G3DSA:3.30.70.920 64 159 2.1E-25 T 11-10-2018 BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 7.5E-25 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 SUPERFAMILY SSF46785 12 70 4.55E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_13750 d05cb03c2bcc435df66c109c69695ac8 164 SUPERFAMILY SSF54909 74 158 2.01E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_14220 86f6f09d1b7d28159ba3ead620f90b03 95 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 2 95 26.061 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 BED32_14220 86f6f09d1b7d28159ba3ead620f90b03 95 SUPERFAMILY SSF50715 1 95 6.28E-27 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_14220 86f6f09d1b7d28159ba3ead620f90b03 95 Gene3D G3DSA:2.40.240.10 1 95 4.0E-31 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 BED32_14220 86f6f09d1b7d28159ba3ead620f90b03 95 Pfam PF01386 Ribosomal L25p family 4 92 2.6E-22 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BED32_14220 86f6f09d1b7d28159ba3ead620f90b03 95 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 95 2.0E-41 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PIRSF PIRSF000722 1 403 2.1E-143 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 SUPERFAMILY SSF53067 4 202 1.75E-61 T 11-10-2018 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 Hamap MF_00020 Acetate kinase [ackA]. 1 404 170.526 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 Hamap MF_01882 Probable propionate kinase [pduW]. 1 399 78.063 T 11-10-2018 IPR024896 Propionate kinase PduW GO:0008980|GO:0019543|GO:0051144 KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 SUPERFAMILY SSF53067 165 399 3.59E-85 T 11-10-2018 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 Pfam PF00871 Acetokinase family 4 394 5.6E-143 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 Gene3D G3DSA:3.30.420.40 203 405 7.3E-77 T 11-10-2018 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 Gene3D G3DSA:3.30.420.40 3 202 1.0E-62 T 11-10-2018 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 210 227 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 TIGRFAM TIGR00016 ackA: acetate kinase 4 399 7.1E-150 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 210 231 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 307 320 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 180 193 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 329 345 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 381 393 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_08840 544d0a396841619d4e60735a5ceb9c98 412 PRINTS PR00471 Acetate kinase family signature 5 16 1.4E-41 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Gene3D G3DSA:3.30.70.260 663 743 2.5E-18 T 11-10-2018 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Gene3D G3DSA:1.10.3210.10 34 207 6.3E-39 T 11-10-2018 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 SUPERFAMILY SSF109604 27 207 2.26E-45 T 11-10-2018 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 SUPERFAMILY SSF81271 398 464 3.92E-22 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 SUPERFAMILY SSF55021 665 741 1.22E-13 T 11-10-2018 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Pfam PF04607 Region found in RelA / SpoT proteins 251 360 2.3E-36 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Pfam PF13291 ACT domain 664 740 8.0E-18 T 11-10-2018 IPR002912 ACT domain BED32_17545 48d687a2defcbb04d97494d76841daf7 744 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 739 1.7E-187 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Gene3D G3DSA:3.30.460.10 209 341 7.0E-50 T 11-10-2018 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Pfam PF02824 TGS domain 405 464 7.5E-21 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 SMART SM00954 251 361 3.5E-66 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Pfam PF13328 HD domain 46 191 2.8E-41 T 11-10-2018 IPR003607 HD/PDEase domain BED32_17545 48d687a2defcbb04d97494d76841daf7 744 Gene3D G3DSA:3.10.20.30 399 472 5.6E-33 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_17545 48d687a2defcbb04d97494d76841daf7 744 SUPERFAMILY SSF81301 196 409 1.8E-64 T 11-10-2018 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 SMART SM01130 3 294 2.8E-69 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 5.3E-51 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.3E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.3E-7 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 PIRSF PIRSF001365 1 295 5.0E-66 T 11-10-2018 IPR002220 DapA-like GO:0016829 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 SUPERFAMILY SSF51569 1 292 4.08E-72 T 11-10-2018 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 40 57 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 BED32_15435 0557c168a9afa6e3d5d817d2d8c7fe4e 296 Gene3D G3DSA:3.20.20.70 1 296 4.4E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 Gene3D G3DSA:2.40.50.140 1 100 5.4E-38 T 11-10-2018 BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 Hamap MF_00720 Primosomal replication protein N [priB]. 1 96 20.566 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 PIRSF PIRSF003135 1 97 1.6E-48 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 SUPERFAMILY SSF50249 1 99 4.46E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 1 96 5.1E-36 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 BED32_19145 863a7ac345d90b18635dbb3a26668d93 100 Pfam PF00436 Single-strand binding protein family 2 82 8.0E-12 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 BED32_13310 d7a03fea9c0fc772446eede910069775 860 Pfam PF00535 Glycosyl transferase family 2 263 445 4.2E-22 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_13310 d7a03fea9c0fc772446eede910069775 860 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 83 762 51.546 T 11-10-2018 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 BED32_13310 d7a03fea9c0fc772446eede910069775 860 Gene3D G3DSA:3.90.550.10 257 485 1.7E-12 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_13310 d7a03fea9c0fc772446eede910069775 860 SUPERFAMILY SSF53448 261 548 2.81E-27 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_07540 7478db33adf845584fc299266ba5080c 554 Gene3D G3DSA:3.40.50.620 194 514 3.6E-114 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07540 7478db33adf845584fc299266ba5080c 554 SUPERFAMILY SSF52402 212 483 2.38E-74 T 11-10-2018 BED32_07540 7478db33adf845584fc299266ba5080c 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 371 4.3E-123 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BED32_07540 7478db33adf845584fc299266ba5080c 554 SUPERFAMILY SSF56235 1 196 1.03E-57 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_07540 7478db33adf845584fc299266ba5080c 554 Gene3D G3DSA:3.60.20.10 2 193 1.5E-75 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_07540 7478db33adf845584fc299266ba5080c 554 Pfam PF13537 Glutamine amidotransferase domain 48 165 1.6E-40 T 11-10-2018 IPR017932 Glutamine amidotransferase type 2 domain BED32_07540 7478db33adf845584fc299266ba5080c 554 PIRSF PIRSF001589 363 507 4.9E-28 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BED32_07540 7478db33adf845584fc299266ba5080c 554 PIRSF PIRSF001589 1 368 3.0E-108 T 11-10-2018 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 BED32_07540 7478db33adf845584fc299266ba5080c 554 Pfam PF00733 Asparagine synthase 211 511 3.0E-99 T 11-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 262 387 8.9E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 Gene3D G3DSA:1.10.3720.10 77 171 1.9E-8 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 SUPERFAMILY SSF161098 82 212 9.42E-15 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 SUPERFAMILY SSF161098 180 374 3.14E-24 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 Gene3D G3DSA:1.10.3720.10 176 388 1.1E-31 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02355 c32a11170e83e0494a4ad4908289c97a 392 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 83 146 2.3E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 172 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 160 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 130 144 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 SMART SM00421 127 184 3.6E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 Pfam PF00196 Bacterial regulatory proteins, luxR family 129 184 2.6E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 SUPERFAMILY SSF46894 122 188 1.05E-13 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_09065 d1c7d86e1a457ae00e9d66c1ae41bfd7 200 Gene3D G3DSA:1.10.10.10 120 192 8.2E-14 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 SMART SM00829 22 339 1.6E-6 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 Gene3D G3DSA:3.90.180.10 19 339 8.1E-134 T 11-10-2018 BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 SUPERFAMILY SSF50129 7 146 2.46E-45 T 11-10-2018 IPR011032 GroES-like superfamily BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 Pfam PF00107 Zinc-binding dehydrogenase 161 289 1.6E-18 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 SUPERFAMILY SSF51735 126 307 7.74E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 Gene3D G3DSA:3.40.50.720 130 311 8.1E-134 T 11-10-2018 BED32_09500 5b5a6fd261b6c3c4d04049ab2d85ff56 344 Pfam PF16884 N-terminal domain of oxidoreductase 9 114 9.4E-43 T 11-10-2018 BED32_14285 23a4576f2e2b1b73e3cd031e66ca6175 244 Gene3D G3DSA:3.10.200.10 22 244 4.0E-79 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily BED32_14285 23a4576f2e2b1b73e3cd031e66ca6175 244 Pfam PF00194 Eukaryotic-type carbonic anhydrase 24 242 3.9E-47 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain BED32_14285 23a4576f2e2b1b73e3cd031e66ca6175 244 SUPERFAMILY SSF51069 24 242 3.21E-75 T 11-10-2018 IPR036398 Alpha carbonic anhydrase domain superfamily BED32_14285 23a4576f2e2b1b73e3cd031e66ca6175 244 ProSitePatterns PS00162 Alpha-carbonic anhydrases signature. 114 130 - T 11-10-2018 IPR018338 Carbonic anhydrase, alpha-class, conserved site GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117|Reactome: R-HSA-1475029 BED32_14285 23a4576f2e2b1b73e3cd031e66ca6175 244 SMART SM01057 25 243 2.4E-93 T 11-10-2018 IPR001148 Alpha carbonic anhydrase domain BED32_13265 fef681f2a54be0d76ac78272b6d51c82 244 SUPERFAMILY SSF54862 40 222 1.67E-65 T 11-10-2018 BED32_13265 fef681f2a54be0d76ac78272b6d51c82 244 Gene3D G3DSA:3.30.70.20 30 84 2.5E-9 T 11-10-2018 BED32_13265 fef681f2a54be0d76ac78272b6d51c82 244 Gene3D G3DSA:3.30.70.20 85 240 1.0E-57 T 11-10-2018 BED32_13265 fef681f2a54be0d76ac78272b6d51c82 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_13265 fef681f2a54be0d76ac78272b6d51c82 244 Pfam PF13247 4Fe-4S dicluster domain 94 187 1.9E-29 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_09405 7231f8fd7488d8a80a579dd0b2dc85f5 247 Gene3D G3DSA:2.60.40.10 47 155 3.7E-9 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09405 7231f8fd7488d8a80a579dd0b2dc85f5 247 SUPERFAMILY SSF49584 162 240 5.76E-7 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_09405 7231f8fd7488d8a80a579dd0b2dc85f5 247 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 47 158 4.4E-18 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_09405 7231f8fd7488d8a80a579dd0b2dc85f5 247 SUPERFAMILY SSF49354 43 157 3.27E-18 T 11-10-2018 IPR008962 PapD-like superfamily BED32_13050 2a3f02ae4076204fe03e9669e3f4eaf3 400 Pfam PF12704 MacB-like periplasmic core domain 27 209 9.9E-12 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_13050 2a3f02ae4076204fe03e9669e3f4eaf3 400 Pfam PF02687 FtsX-like permease family 297 393 3.9E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_13050 2a3f02ae4076204fe03e9669e3f4eaf3 400 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 400 1.2E-138 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 166.076 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 SUPERFAMILY SSF55620 186 266 2.22E-9 T 11-10-2018 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 Pfam PF14489 QueF-like protein 195 269 1.2E-27 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 131 1.2E-48 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 Gene3D G3DSA:3.30.1130.10 144 281 2.1E-59 T 11-10-2018 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 Gene3D G3DSA:3.30.1130.10 21 139 2.5E-44 T 11-10-2018 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 TIGRFAM TIGR03138 QueF: queuine synthase 10 281 1.6E-127 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BED32_16935 559608d592c7de3d19aa7d8cac17a7c8 281 PIRSF PIRSF004750 6 281 6.0E-125 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 SUPERFAMILY SSF53633 26 314 3.4E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_02160 7964650d2da0f6f146403bb5316baaae 471 Gene3D G3DSA:3.30.70.260 331 405 1.4E-50 T 11-10-2018 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 Gene3D G3DSA:3.30.70.260 325 469 1.4E-50 T 11-10-2018 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 Gene3D G3DSA:3.40.1160.10 28 311 6.6E-101 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_02160 7964650d2da0f6f146403bb5316baaae 471 ProSitePatterns PS00324 Aspartokinase signature. 28 36 - T 11-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 Pfam PF00696 Amino acid kinase family 26 299 2.5E-45 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 PIRSF PIRSF000726 24 471 2.5E-150 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 25 471 2.3E-129 T 11-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 25 471 4.9E-140 T 11-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 SUPERFAMILY SSF55021 399 470 8.01E-15 T 11-10-2018 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 Gene3D G3DSA:1.20.120.1320 64 156 6.6E-101 T 11-10-2018 BED32_02160 7964650d2da0f6f146403bb5316baaae 471 SUPERFAMILY SSF55021 318 415 5.89E-17 T 11-10-2018 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 SUPERFAMILY SSF47345 3 83 8.89E-32 T 11-10-2018 IPR035900 Colicin E immunity protein superfamily BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 3 21 1.1E-24 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 38 54 1.1E-24 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 61 82 1.1E-24 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 3 82 1.7E-33 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 8 82 1.0E-30 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00840 25f3c84bfc9043828f4efedccdd2d49e 83 Gene3D G3DSA:1.10.1200.20 1 83 5.5E-34 T 11-10-2018 IPR035900 Colicin E immunity protein superfamily BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 Pfam PF00343 Carbohydrate phosphorylase 102 810 0.0 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 SUPERFAMILY SSF53756 12 814 0.0 T 11-10-2018 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 654 666 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 PIRSF PIRSF000460 2 815 1.2E-230 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 14 810 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 Gene3D G3DSA:3.40.50.2000 472 795 1.7E-147 T 11-10-2018 BED32_01425 abd221891acf43d5e12f03cc18dbdc18 815 Gene3D G3DSA:3.40.50.2000 6 471 1.6E-205 T 11-10-2018 BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Gene3D G3DSA:2.60.40.420 30 165 7.1E-32 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 SUPERFAMILY SSF49503 173 292 7.48E-31 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Pfam PF07731 Multicopper oxidase 361 469 8.5E-13 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 469 57.867 T 11-10-2018 IPR026589 Cell division protein FtsP GO:0043093 BED32_03550 d4a3049809820f15b951507f8cec01d5 475 SUPERFAMILY SSF49503 3 166 4.77E-26 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Pfam PF00394 Multicopper oxidase 230 288 5.3E-4 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Gene3D G3DSA:2.60.40.420 166 346 2.4E-54 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Gene3D G3DSA:2.60.40.420 347 473 2.6E-23 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 SUPERFAMILY SSF49503 316 466 6.2E-17 T 11-10-2018 IPR008972 Cupredoxin BED32_03550 d4a3049809820f15b951507f8cec01d5 475 Pfam PF07732 Multicopper oxidase 53 167 1.8E-26 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 BED32_08000 294b226a442acb011e61541ddec8f08d 670 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 663 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BED32_08000 294b226a442acb011e61541ddec8f08d 670 SUPERFAMILY SSF52540 4 415 4.57E-139 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08000 294b226a442acb011e61541ddec8f08d 670 SUPERFAMILY SSF46600 618 666 1.44E-12 T 11-10-2018 IPR036876 UVR domain superfamily BED32_08000 294b226a442acb011e61541ddec8f08d 670 Pfam PF00271 Helicase conserved C-terminal domain 439 544 1.2E-17 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_08000 294b226a442acb011e61541ddec8f08d 670 Gene3D G3DSA:3.40.50.300 415 596 1.8E-48 T 11-10-2018 BED32_08000 294b226a442acb011e61541ddec8f08d 670 Gene3D G3DSA:3.40.50.300 271 414 4.3E-52 T 11-10-2018 BED32_08000 294b226a442acb011e61541ddec8f08d 670 Gene3D G3DSA:3.40.50.300 1 241 4.0E-76 T 11-10-2018 BED32_08000 294b226a442acb011e61541ddec8f08d 670 Gene3D G3DSA:4.10.860.10 613 670 2.8E-22 T 11-10-2018 BED32_08000 294b226a442acb011e61541ddec8f08d 670 SUPERFAMILY SSF52540 37 579 1.54E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08000 294b226a442acb011e61541ddec8f08d 670 SMART SM00487 9 426 4.8E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_08000 294b226a442acb011e61541ddec8f08d 670 SMART SM00490 460 546 6.3E-20 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_08000 294b226a442acb011e61541ddec8f08d 670 Pfam PF12344 Ultra-violet resistance protein B 552 593 7.5E-20 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain BED32_08000 294b226a442acb011e61541ddec8f08d 670 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 665 44.042 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 BED32_08000 294b226a442acb011e61541ddec8f08d 670 Pfam PF02151 UvrB/uvrC motif 631 665 2.3E-9 T 11-10-2018 IPR001943 UVR domain GO:0005515 BED32_08000 294b226a442acb011e61541ddec8f08d 670 Pfam PF04851 Type III restriction enzyme, res subunit 11 92 1.0E-9 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BED32_08325 85d014d35556a642667466a8c388c330 295 Pfam PF00892 EamA-like transporter family 150 278 1.2E-15 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_08325 85d014d35556a642667466a8c388c330 295 SUPERFAMILY SSF103481 187 281 7.06E-10 T 11-10-2018 BED32_15315 29921ee543d161f4e048c15d8424fe5a 186 Pfam PF06042 Nucleotidyltransferase 23 183 1.1E-65 T 11-10-2018 IPR009267 Putative nucleotidyltransferase BED32_19175 7ab376eb3c2fa955b4b880d80acdcd01 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_19175 7ab376eb3c2fa955b4b880d80acdcd01 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 286 6.6E-25 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Gene3D G3DSA:3.30.43.10 1 103 5.8E-11 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Pfam PF09330 D-lactate dehydrogenase, membrane binding 278 567 3.0E-147 T 11-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 SUPERFAMILY SSF56176 10 271 1.2E-69 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Gene3D G3DSA:3.30.1370.20 435 519 5.0E-41 T 11-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Gene3D G3DSA:3.30.70.610 352 434 1.7E-19 T 11-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Gene3D G3DSA:3.30.70.610 269 350 7.9E-19 T 11-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 PIRSF PIRSF000101 4 569 3.3E-290 T 11-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Pfam PF01565 FAD binding domain 48 167 3.7E-7 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BED32_08090 6792b50c61ff4e401319140b6871955f 570 SUPERFAMILY SSF55103 275 567 4.8E-116 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 10 568 58.751 T 11-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 BED32_08090 6792b50c61ff4e401319140b6871955f 570 Gene3D G3DSA:3.30.465.10 106 268 1.4E-76 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 PRINTS PR00112 Acylphosphatase signature 26 51 9.0E-5 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 PRINTS PR00112 Acylphosphatase signature 61 81 9.0E-5 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 PRINTS PR00112 Acylphosphatase signature 5 20 9.0E-5 T 11-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 Hamap MF_01450 Acylphosphatase [yccX]. 2 91 29.807 T 11-10-2018 IPR028627 Acylphosphatase, bacteria GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 Pfam PF00708 Acylphosphatase 8 90 9.9E-25 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 SUPERFAMILY SSF54975 3 92 8.94E-29 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_13405 d035161c547bb2e7246f8e7f571cb1e7 92 Gene3D G3DSA:3.30.70.100 1 91 6.7E-31 T 11-10-2018 BED32_01525 7e495b136c655e674fe8079e3138b456 387 SUPERFAMILY SSF103473 4 378 1.83E-23 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_01525 7e495b136c655e674fe8079e3138b456 387 Gene3D G3DSA:1.20.1250.20 1 380 2.1E-21 T 11-10-2018 BED32_01525 7e495b136c655e674fe8079e3138b456 387 Pfam PF07690 Major Facilitator Superfamily 5 344 5.5E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 ProSitePatterns PS00567 Phosphoribulokinase signature. 164 177 - T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 Gene3D G3DSA:3.40.50.300 1 289 4.0E-114 T 11-10-2018 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 6.0E-29 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 6.0E-29 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 6.0E-29 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 6.0E-29 T 11-10-2018 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 SUPERFAMILY SSF52540 4 286 5.7E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01730 e13b54d94d8d4b7518ee27a8a2c6ee9e 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 7.5E-74 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 BED32_21605 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 30 1.0E-10 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_21605 9240acf8a3d6a0bb107ba66b40cbdf89 46 Pfam PF00468 Ribosomal protein L34 1 44 3.9E-23 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_21605 9240acf8a3d6a0bb107ba66b40cbdf89 46 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 3.9E-26 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_21605 9240acf8a3d6a0bb107ba66b40cbdf89 46 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 15.553 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_21605 9240acf8a3d6a0bb107ba66b40cbdf89 46 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_04705 648bcca2be32fa8c678b96aef8b8cd90 62 Pfam PF15959 Domain of unknown function (DUF4762) 1 62 7.7E-19 T 11-10-2018 IPR031882 Protein of unknown function DUF4762 BED32_00640 047a42befa3e7b240da96943c5ce19b3 205 Gene3D G3DSA:3.30.1500.10 1 193 2.3E-75 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_00640 047a42befa3e7b240da96943c5ce19b3 205 SUPERFAMILY SSF54621 2 175 1.27E-40 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_00640 047a42befa3e7b240da96943c5ce19b3 205 Pfam PF06438 Heme-binding protein A (HasA) 1 205 1.8E-74 T 11-10-2018 IPR010495 Haem-binding HasA BED32_07335 1ab5a02b7d24d9e31e58ac14ff32daa5 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 4.7E-14 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BED32_07335 1ab5a02b7d24d9e31e58ac14ff32daa5 95 SUPERFAMILY SSF54909 1 91 5.37E-27 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_07335 1ab5a02b7d24d9e31e58ac14ff32daa5 95 Gene3D G3DSA:3.30.70.100 2 94 7.7E-34 T 11-10-2018 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 SMART SM01228 546 617 5.5E-45 T 11-10-2018 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 3.2E-295 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Gene3D G3DSA:1.10.150.570 570 622 1.6E-23 T 11-10-2018 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Pfam PF01134 Glucose inhibited division protein A 8 398 2.4E-169 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 SUPERFAMILY SSF51905 6 261 5.65E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Gene3D G3DSA:3.50.50.60 294 458 6.4E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Gene3D G3DSA:3.50.50.60 2 244 2.2E-91 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Gene3D G3DSA:1.10.10.1800 459 550 2.0E-31 T 11-10-2018 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Pfam PF13932 GidA associated domain 403 616 1.3E-76 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 BED32_21420 6faaad06bf239dff15bf5e99b642f8d4 629 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.746 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 SUPERFAMILY SSF52540 326 551 1.52E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 SUPERFAMILY SSF52540 7 230 2.05E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 SMART SM00382 356 537 1.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 SMART SM00382 34 268 1.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 Pfam PF00005 ABC transporter 28 167 3.8E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 Gene3D G3DSA:3.40.50.300 321 559 1.8E-63 T 11-10-2018 BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 Gene3D G3DSA:3.40.50.300 4 240 1.8E-58 T 11-10-2018 BED32_08050 35f381ab06dc9074286c9ffa08da09a2 583 Pfam PF00005 ABC transporter 348 491 6.3E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12070 3baafe0aabde40fb5b43845b95ca0723 210 Gene3D G3DSA:3.20.20.450 1 201 3.7E-38 T 11-10-2018 IPR035919 EAL domain superfamily BED32_12070 3baafe0aabde40fb5b43845b95ca0723 210 SUPERFAMILY SSF141868 40 191 2.48E-21 T 11-10-2018 IPR035919 EAL domain superfamily BED32_12070 3baafe0aabde40fb5b43845b95ca0723 210 Pfam PF00563 EAL domain 18 190 6.7E-15 T 11-10-2018 IPR001633 EAL domain BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 Gene3D G3DSA:3.40.50.1100 53 383 1.7E-180 T 11-10-2018 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 PIRSF PIRSF001413 1 396 9.4E-169 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 Gene3D G3DSA:3.40.50.1100 9 204 1.7E-180 T 11-10-2018 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 376 3.7E-48 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 7 388 1.1E-188 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.19 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 BED32_12010 95d2a333334e7c860c0b8373c23b38d7 396 SUPERFAMILY SSF53686 4 389 5.24E-141 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 4.0E-135 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 6.8E-59 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Gene3D G3DSA:3.40.50.720 1 208 1.2E-86 T 11-10-2018 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 342 5.2E-27 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 483 7.4E-22 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 SUPERFAMILY SSF51735 31 209 6.37E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 SUPERFAMILY SSF48179 210 343 6.29E-40 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Gene3D G3DSA:1.10.1040.10 209 492 3.6E-127 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 SUPERFAMILY SSF48179 348 485 2.72E-41 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_00830 c3cd7292ff80e95c34607e47312b6842 492 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 486 39.299 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 Gene3D G3DSA:3.20.20.80 3 458 4.1E-150 T 11-10-2018 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 SUPERFAMILY SSF51445 1 460 2.43E-158 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 Pfam PF00232 Glycosyl hydrolase family 1 2 458 5.4E-131 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 394 4.7E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 428 440 4.7E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 4.7E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 421 4.7E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14855 481d743d4ec873d89242f87b0a9f426a 460 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 4.7E-15 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_13665 a983d06f63fab303f8fae71a7c47df51 230 SUPERFAMILY SSF52540 6 224 4.72E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13665 a983d06f63fab303f8fae71a7c47df51 230 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 2.0E-92 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BED32_13665 a983d06f63fab303f8fae71a7c47df51 230 Gene3D G3DSA:3.40.50.300 1 230 1.8E-86 T 11-10-2018 BED32_13665 a983d06f63fab303f8fae71a7c47df51 230 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 33.866 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BED32_13665 a983d06f63fab303f8fae71a7c47df51 230 Pfam PF02224 Cytidylate kinase 8 221 2.3E-81 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 BED32_13435 c4e16738e5397b644ad415b7dddd8b69 227 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 220 1.5E-45 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 BED32_13435 c4e16738e5397b644ad415b7dddd8b69 227 Hamap MF_00789 UPF0319 protein YccT [yccT]. 4 223 25.507 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 PIRSF PIRSF006232 2 290 2.9E-92 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 Gene3D G3DSA:2.60.120.10 149 253 4.7E-85 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 Pfam PF05726 Pirin C-terminal cupin domain 182 284 2.9E-29 T 11-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 SUPERFAMILY SSF51182 4 288 4.5E-87 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 Pfam PF02678 Pirin 21 127 2.6E-34 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BED32_12285 62251f54d7ab1a4f4f779c42bff2f86c 290 Gene3D G3DSA:2.60.120.10 17 279 4.7E-85 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 263 275 - T 11-10-2018 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 Pfam PF09632 Rac1-binding domain 433 729 5.5E-198 T 11-10-2018 IPR019093 Rac1-binding domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 SUPERFAMILY SSF56112 151 407 2.56E-20 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 Pfam PF00069 Protein kinase domain 185 405 2.3E-11 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 Gene3D G3DSA:1.20.120.1330 428 578 3.6E-96 T 11-10-2018 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 420 441 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 500 522 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 554 571 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 215 234 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 105 127 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 177 202 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 327 347 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 21 44 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 378 398 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 634 655 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 PRINTS PR01373 Yersinia serine/threonine protein kinase signature 669 689 6.8E-153 T 11-10-2018 IPR003547 Serine/threonine protein kinase, yersinia-type GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1|KEGG: 04714+2.7.11.1|KEGG: 04926+2.7.11.1|KEGG: 05163+2.7.11.1|KEGG: 05165+2.7.11.1|KEGG: 05170+2.7.11.1 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 SMART SM00220 146 405 1.0E-5 T 11-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 Gene3D G3DSA:1.20.58.1230 582 729 9.6E-84 T 11-10-2018 BED32_00080 5e32654efba7ecb1043a428d957bbe24 729 Gene3D G3DSA:1.10.510.10 207 410 3.1E-17 T 11-10-2018 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 283 6.5E-96 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 PIRSF PIRSF001359 1 284 6.1E-113 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 8.5E-154 T 11-10-2018 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 84 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 SUPERFAMILY SSF51569 3 283 6.01E-97 T 11-10-2018 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 Gene3D G3DSA:3.20.20.70 1 291 7.2E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_10060 8a4f5d16d5437d09a8afab2d5de26ad0 292 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 3.4E-109 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 SMART SM00644 7 158 4.1E-36 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 SUPERFAMILY SSF47090 178 255 4.47E-20 T 11-10-2018 IPR036365 PGBD-like superfamily BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 SUPERFAMILY SSF55846 12 174 1.57E-46 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 17 159 2.1E-26 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 Gene3D G3DSA:3.40.80.10 17 172 3.2E-52 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_11350 6ac504580805d9a23d5722c48571e8ab 258 Gene3D G3DSA:1.10.101.10 173 254 3.7E-29 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BED32_20460 f524ea870cf478fb9e5180397a15e335 355 SUPERFAMILY SSF51735 2 339 4.96E-95 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20460 f524ea870cf478fb9e5180397a15e335 355 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 340 3.9E-160 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 BED32_20460 f524ea870cf478fb9e5180397a15e335 355 Gene3D G3DSA:3.90.25.10 202 334 2.3E-139 T 11-10-2018 BED32_20460 f524ea870cf478fb9e5180397a15e335 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 327 3.2E-99 T 11-10-2018 IPR016040 NAD(P)-binding domain BED32_20460 f524ea870cf478fb9e5180397a15e335 355 Gene3D G3DSA:3.40.50.720 3 326 2.3E-139 T 11-10-2018 BED32_17185 30f4c947740e15573c36a5039f26a506 295 Pfam PF03934 Type II secretion system (T2SS), protein K 51 288 4.9E-14 T 11-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 BED32_17185 30f4c947740e15573c36a5039f26a506 295 Gene3D G3DSA:3.30.1300.30 58 279 4.7E-14 T 11-10-2018 BED32_17185 30f4c947740e15573c36a5039f26a506 295 Gene3D G3DSA:1.10.40.60 78 183 4.7E-14 T 11-10-2018 IPR038072 GspK, central domain superfamily BED32_17185 30f4c947740e15573c36a5039f26a506 295 SUPERFAMILY SSF158544 183 236 6.02E-13 T 11-10-2018 IPR038072 GspK, central domain superfamily BED32_17185 30f4c947740e15573c36a5039f26a506 295 Gene3D G3DSA:1.10.40.60 184 256 4.7E-14 T 11-10-2018 IPR038072 GspK, central domain superfamily BED32_00045 397ae2b33f02a851bca78850ef201e66 217 SUPERFAMILY SSF53098 110 212 3.95E-20 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00045 397ae2b33f02a851bca78850ef201e66 217 Pfam PF13276 HTH-like domain 41 99 5.5E-7 T 11-10-2018 IPR025948 HTH-like domain BED32_00045 397ae2b33f02a851bca78850ef201e66 217 Gene3D G3DSA:3.30.420.10 108 216 4.3E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_00045 397ae2b33f02a851bca78850ef201e66 217 Pfam PF00665 Integrase core domain 114 212 1.8E-13 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 190 336 1.0E-17 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 8 166 2.3E-41 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 SUPERFAMILY SSF55120 2 339 1.02E-104 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 4 340 9.9E-80 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 Gene3D G3DSA:3.30.2350.20 16 336 2.6E-120 T 11-10-2018 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 76 89 - T 11-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 Gene3D G3DSA:3.30.2340.10 166 300 2.6E-120 T 11-10-2018 BED32_04625 dfaae829481ceb64a9f2ab3152ff6b72 349 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 4 341 28.121 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_03205 91e6524f82ed24d73a80e7f9f86f0bd9 131 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 16 127 7.3E-20 T 11-10-2018 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III BED32_04900 8061ca035029dad367800449028066c1 354 SUPERFAMILY SSF52540 6 269 6.1E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04900 8061ca035029dad367800449028066c1 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 6 326 3.2E-170 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 SMART SM00382 59 230 1.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04900 8061ca035029dad367800449028066c1 354 Pfam PF00154 recA bacterial DNA recombination protein 9 270 7.5E-141 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 Hamap MF_00268 Protein RecA [recA]. 7 331 50.644 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 SUPERFAMILY SSF54752 272 327 3.79E-20 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 212 240 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 299 316 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 129 158 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 167 196 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 245 274 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 PRINTS PR00142 RecA protein signature 95 124 1.4E-84 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 BED32_04900 8061ca035029dad367800449028066c1 354 Gene3D G3DSA:3.30.250.10 271 329 8.2E-25 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal BED32_04900 8061ca035029dad367800449028066c1 354 ProSitePatterns PS00321 recA signature. 215 223 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 BED32_04900 8061ca035029dad367800449028066c1 354 Gene3D G3DSA:3.40.50.300 28 269 4.1E-81 T 11-10-2018 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 TIGRFAM TIGR02491 NrdG: anaerobic ribonucleoside-triphosphate reductase activating protein 2 153 3.4E-64 T 11-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 Pfam PF13353 4Fe-4S single cluster domain 12 151 4.3E-52 T 11-10-2018 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 ProSitePatterns PS01087 Radical activating enzymes signature. 14 35 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 Gene3D G3DSA:3.20.20.70 2 154 3.8E-21 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 SUPERFAMILY SSF102114 16 114 6.28E-7 T 11-10-2018 BED32_18715 9504d28f63acaddd8ff4ba98c440b954 154 PIRSF PIRSF000368 1 154 1.6E-60 T 11-10-2018 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic GO:0005737|GO:0043365|GO:0051539|GO:0055114 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 Gene3D G3DSA:3.40.50.150 7 239 1.7E-85 T 11-10-2018 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 3.6E-95 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 9.8E-19 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 9.8E-19 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 9.8E-19 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 9.8E-19 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 SUPERFAMILY SSF53335 5 268 6.95E-73 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 9.6E-75 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 PIRSF PIRSF000398 1 270 3.5E-65 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 BED32_01635 e6ce9c3e65184573ca8ec1d4237cf8c5 270 Gene3D G3DSA:1.10.1020.10 57 156 1.7E-85 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 BED32_08915 916dc56e54339af14c0fe40b1026f044 174 PIRSF PIRSF018505 1 174 5.1E-72 T 11-10-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 BED32_08915 916dc56e54339af14c0fe40b1026f044 174 Pfam PF02287 Dehydratase small subunit 40 171 6.1E-59 T 11-10-2018 IPR003207 Propanediol/glycerol dehydratase, small subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 BED32_08915 916dc56e54339af14c0fe40b1026f044 174 Gene3D G3DSA:1.10.1510.20 82 174 1.9E-40 T 11-10-2018 IPR036091 Propanediol/glycerol dehydratase, small subunit superfamily KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 BED32_08915 916dc56e54339af14c0fe40b1026f044 174 SUPERFAMILY SSF47148 40 174 1.31E-59 T 11-10-2018 IPR036091 Propanediol/glycerol dehydratase, small subunit superfamily KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 BED32_20265 ea42e6313c2545399df589d2551b5bd1 368 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 41 356 1.3E-71 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BED32_20265 ea42e6313c2545399df589d2551b5bd1 368 Gene3D G3DSA:3.20.20.190 34 362 1.1E-133 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_20265 ea42e6313c2545399df589d2551b5bd1 368 SUPERFAMILY SSF51695 37 361 6.02E-91 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 Gene3D G3DSA:2.60.410.10 286 377 1.0E-25 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 125 142 1.3E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 152 165 1.3E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 66 77 1.3E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 SUPERFAMILY SSF69189 286 379 6.28E-24 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 33 266 5.2E-97 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 SMART SM00936 286 377 1.0E-30 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 SUPERFAMILY SSF56601 9 286 8.7E-81 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 286 377 2.2E-20 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_13970 42e9f13917b2368bcd2194a19be41e58 397 Gene3D G3DSA:3.40.710.10 26 285 6.5E-90 T 11-10-2018 BED32_00450 814da358703488dcb023c2aa19af90a9 95 TIGRFAM TIGR02573 LcrG_PcrG: type III secretion protein LcrG 7 95 6.0E-45 T 11-10-2018 IPR009863 Type III secretion protein, LcrG BED32_00450 814da358703488dcb023c2aa19af90a9 95 Pfam PF07216 LcrG protein 5 95 7.7E-45 T 11-10-2018 IPR009863 Type III secretion protein, LcrG BED32_00450 814da358703488dcb023c2aa19af90a9 95 ProDom PD020116 PLASMID ACRG TYPE III G SECRETION REGULATOR LCRG LOCUS RESPONSE 11 95 2.0E-43 T 11-10-2018 IPR009863 Type III secretion protein, LcrG BED32_01970 e34d84d1e046af74aec80a2293155302 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 11-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01970 e34d84d1e046af74aec80a2293155302 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 1.2E-30 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P BED32_01970 e34d84d1e046af74aec80a2293155302 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.213 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 BED32_01970 e34d84d1e046af74aec80a2293155302 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 5.8E-51 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01970 e34d84d1e046af74aec80a2293155302 144 SUPERFAMILY SSF52080 4 143 1.7E-46 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily BED32_01970 e34d84d1e046af74aec80a2293155302 144 Gene3D G3DSA:3.100.10.10 70 144 2.1E-11 T 11-10-2018 BED32_16495 5a832a281113545c0f959d4835ce49bb 221 SUPERFAMILY SSF52540 3 194 1.03E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16495 5a832a281113545c0f959d4835ce49bb 221 Pfam PF00005 ABC transporter 18 150 1.0E-15 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_16495 5a832a281113545c0f959d4835ce49bb 221 SMART SM00382 26 199 1.7E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_16495 5a832a281113545c0f959d4835ce49bb 221 Gene3D G3DSA:3.40.50.300 3 200 1.2E-40 T 11-10-2018 BED32_16495 5a832a281113545c0f959d4835ce49bb 221 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_19290 1d47b86767bf6987df8b790147688798 621 Gene3D G3DSA:1.20.58.100 438 552 8.2E-35 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 SUPERFAMILY SSF51905 9 434 1.47E-72 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_19290 1d47b86767bf6987df8b790147688798 621 SUPERFAMILY SSF46977 458 597 2.09E-44 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 PIRSF PIRSF000171 11 586 6.2E-42 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 57 66 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 Pfam PF00890 FAD binding domain 21 411 3.5E-114 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 Pfam PF02910 Fumarate reductase flavoprotein C-term 467 595 1.3E-37 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 SUPERFAMILY SSF56425 241 372 3.14E-43 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 21 595 1.8E-244 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 Gene3D G3DSA:4.10.80.40 557 591 5.9E-19 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 Gene3D G3DSA:3.50.50.60 21 423 7.3E-164 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_19290 1d47b86767bf6987df8b790147688798 621 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 21 43 2.2E-5 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 389 396 2.2E-5 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 Gene3D G3DSA:3.90.700.10 251 377 7.3E-164 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19290 1d47b86767bf6987df8b790147688798 621 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 17 596 0.0 T 11-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 BED32_19290 1d47b86767bf6987df8b790147688798 621 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 22 41 6.8E-10 T 11-10-2018 BED32_19290 1d47b86767bf6987df8b790147688798 621 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 374 396 6.8E-10 T 11-10-2018 BED32_18990 54e5b578902c1fb88c53421476809ce9 219 SMART SM00862 145 216 1.2E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_18990 54e5b578902c1fb88c53421476809ce9 219 Gene3D G3DSA:1.10.10.10 122 218 9.5E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18990 54e5b578902c1fb88c53421476809ce9 219 SUPERFAMILY SSF52172 1 175 9.23E-38 T 11-10-2018 IPR011006 CheY-like superfamily BED32_18990 54e5b578902c1fb88c53421476809ce9 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.6E-19 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_18990 54e5b578902c1fb88c53421476809ce9 219 SMART SM00448 1 112 8.8E-36 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_18990 54e5b578902c1fb88c53421476809ce9 219 Pfam PF00072 Response regulator receiver domain 4 113 6.6E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_18990 54e5b578902c1fb88c53421476809ce9 219 Gene3D G3DSA:3.40.50.2300 1 121 5.4E-38 T 11-10-2018 BED32_04890 1118412ef842c9c8695bfa51c87f9205 431 Pfam PF07690 Major Facilitator Superfamily 3 267 1.3E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_04890 1118412ef842c9c8695bfa51c87f9205 431 Gene3D G3DSA:1.20.1250.20 183 363 7.1E-19 T 11-10-2018 BED32_04890 1118412ef842c9c8695bfa51c87f9205 431 Gene3D G3DSA:1.20.1250.20 2 167 3.5E-13 T 11-10-2018 BED32_04890 1118412ef842c9c8695bfa51c87f9205 431 SUPERFAMILY SSF103473 3 353 6.93E-40 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_03335 2db2ce60537f3c75f355496ce3285477 466 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 33 383 8.5E-104 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 BED32_03335 2db2ce60537f3c75f355496ce3285477 466 SUPERFAMILY SSF53383 8 450 2.62E-125 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_03335 2db2ce60537f3c75f355496ce3285477 466 Gene3D G3DSA:3.40.640.10 66 358 2.4E-78 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_03335 2db2ce60537f3c75f355496ce3285477 466 Gene3D G3DSA:3.90.1150.160 360 466 2.4E-36 T 11-10-2018 BED32_03335 2db2ce60537f3c75f355496ce3285477 466 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 269 290 - T 11-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 BED32_03335 2db2ce60537f3c75f355496ce3285477 466 TIGRFAM TIGR01788 Glu-decarb-GAD: glutamate decarboxylase 16 448 6.6E-199 T 11-10-2018 IPR010107 Glutamate decarboxylase GO:0004351|GO:0006536|GO:0030170 KEGG: 00250+4.1.1.15|KEGG: 00410+4.1.1.15|KEGG: 00430+4.1.1.15|KEGG: 00650+4.1.1.15|MetaCyc: PWY-4321 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 Pfam PF01418 Helix-turn-helix domain, rpiR family 8 70 3.7E-15 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 SUPERFAMILY SSF53697 86 230 5.63E-31 T 11-10-2018 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 Gene3D G3DSA:3.40.50.10490 80 243 2.1E-30 T 11-10-2018 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 Pfam PF01380 SIS domain 108 223 2.8E-16 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 SUPERFAMILY SSF46689 6 72 1.06E-20 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_14300 9d07ddf5637ed5234c4720a676a107f2 246 Gene3D G3DSA:1.10.10.10 3 71 1.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 Gene3D G3DSA:3.40.50.720 1 248 2.1E-76 T 11-10-2018 BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 SUPERFAMILY SSF51735 5 247 2.58E-74 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 247 1.8E-58 T 11-10-2018 BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 181 3.0E-5 T 11-10-2018 BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 2.6E-30 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.6E-30 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 2.6E-30 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.6E-30 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_17240 6f49aac8e839456066e12e8e4b63e4a0 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.6E-30 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_12880 11ab8d14662e385e2fb6d9e72806e0bb 134 SUPERFAMILY SSF46785 20 126 1.69E-30 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12880 11ab8d14662e385e2fb6d9e72806e0bb 134 Pfam PF01638 HxlR-like helix-turn-helix 36 123 2.8E-27 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type BED32_12880 11ab8d14662e385e2fb6d9e72806e0bb 134 Gene3D G3DSA:1.10.10.10 9 133 3.0E-38 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15670 2d0873bc4bac08e0353238349c952df9 238 Gene3D G3DSA:1.10.8.60 172 238 1.6E-27 T 11-10-2018 BED32_15670 2d0873bc4bac08e0353238349c952df9 238 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 11 236 1.1E-84 T 11-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 BED32_15670 2d0873bc4bac08e0353238349c952df9 238 Hamap MF_01158 DnaA regulatory inactivator Hda [hda]. 10 238 58.607 T 11-10-2018 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae BED32_15670 2d0873bc4bac08e0353238349c952df9 238 SUPERFAMILY SSF52540 23 216 1.98E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15670 2d0873bc4bac08e0353238349c952df9 238 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 136 163 1.3E-6 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_15670 2d0873bc4bac08e0353238349c952df9 238 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 48 68 1.3E-6 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like BED32_15670 2d0873bc4bac08e0353238349c952df9 238 Gene3D G3DSA:3.40.50.300 3 169 1.4E-35 T 11-10-2018 BED32_15670 2d0873bc4bac08e0353238349c952df9 238 Pfam PF00308 Bacterial dnaA protein 21 217 2.5E-17 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 Gene3D G3DSA:3.50.50.60 1 66 3.0E-6 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 SUPERFAMILY SSF51905 1 419 2.35E-25 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 Pfam PF00890 FAD binding domain 4 404 4.4E-61 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 PIRSF PIRSF000141 1 423 1.1E-171 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 420 50.61 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BED32_20250 04d967700c499e72700c2ea02f6c6f26 424 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 417 3.0E-178 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 SUPERFAMILY SSF52540 1 206 6.5E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 SUPERFAMILY SSF48019 208 329 3.4E-36 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 Pfam PF13177 DNA polymerase III, delta subunit 9 164 9.2E-39 T 11-10-2018 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 Gene3D G3DSA:1.20.272.10 208 330 1.6E-40 T 11-10-2018 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 Gene3D G3DSA:3.40.50.300 1 166 5.8E-46 T 11-10-2018 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 12 201 7.5E-62 T 11-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_13140 f6bb5d382185bc991f0bd643151b7c40 335 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 207 322 1.4E-40 T 11-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_09735 00ba2a2836e539a5421986913be20234 58 Pfam PF10753 Toxin GhoT_OrtT 7 58 4.6E-19 T 11-10-2018 IPR019689 Toxin GhoT/OrtT BED32_15255 c5161c479970ac1c6272a753a9b7066c 336 Gene3D G3DSA:3.20.20.100 15 330 7.1E-117 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_15255 c5161c479970ac1c6272a753a9b7066c 336 Pfam PF00248 Aldo/keto reductase family 28 327 1.5E-65 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_15255 c5161c479970ac1c6272a753a9b7066c 336 SUPERFAMILY SSF51430 13 328 2.1E-86 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 SMART SM00228 352 449 1.2E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 SMART SM00228 269 351 1.0E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Gene3D G3DSA:2.30.42.10 267 367 7.3E-29 T 11-10-2018 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 455 2.0E-160 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 SUPERFAMILY SSF50494 40 265 5.83E-65 T 11-10-2018 IPR009003 Peptidase S1, PA clan BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Gene3D G3DSA:2.30.42.10 368 457 1.7E-25 T 11-10-2018 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Gene3D G3DSA:2.40.10.120 39 263 6.4E-87 T 11-10-2018 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Pfam PF13365 Trypsin-like peptidase domain 94 230 7.3E-33 T 11-10-2018 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 125 145 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 166 190 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 104 116 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 223 240 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 201 218 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 PRINTS PR00834 HtrA/DegQ protease family signature 309 321 1.2E-58 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Pfam PF13180 PDZ domain 271 360 1.1E-15 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 SUPERFAMILY SSF50156 227 352 3.68E-24 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 SUPERFAMILY SSF50156 382 456 1.31E-15 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 BED32_03000 41a7d635f9b1d7189397f3df0b323a31 457 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 376 445 1.7E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 BED32_16245 7f265c998fad2420d6092567b85744cf 226 ProSitePatterns PS00517 Ribonuclease III family signature. 38 46 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BED32_16245 7f265c998fad2420d6092567b85744cf 226 SUPERFAMILY SSF54768 109 223 1.29E-27 T 11-10-2018 BED32_16245 7f265c998fad2420d6092567b85744cf 226 Gene3D G3DSA:3.30.160.20 154 224 2.7E-20 T 11-10-2018 BED32_16245 7f265c998fad2420d6092567b85744cf 226 Pfam PF00035 Double-stranded RNA binding motif 156 223 3.0E-15 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain BED32_16245 7f265c998fad2420d6092567b85744cf 226 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 223 2.1E-73 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BED32_16245 7f265c998fad2420d6092567b85744cf 226 Pfam PF14622 Ribonuclease-III-like 20 142 5.0E-33 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BED32_16245 7f265c998fad2420d6092567b85744cf 226 Gene3D G3DSA:1.10.1520.10 4 146 1.6E-43 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BED32_16245 7f265c998fad2420d6092567b85744cf 226 SMART SM00358 156 224 1.5E-23 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain BED32_16245 7f265c998fad2420d6092567b85744cf 226 SUPERFAMILY SSF69065 5 159 2.79E-49 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 BED32_16245 7f265c998fad2420d6092567b85744cf 226 SMART SM00535 21 149 3.6E-54 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 BED32_16245 7f265c998fad2420d6092567b85744cf 226 Hamap MF_00104 Ribonuclease 3 [rnc]. 9 220 29.519 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 BED32_13510 d6d6e7d50fd744dccb107733263d5714 405 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 1 391 4.5E-152 T 11-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type BED32_13510 d6d6e7d50fd744dccb107733263d5714 405 Pfam PF04403 Paraquat-inducible protein A 236 392 9.3E-54 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like BED32_13510 d6d6e7d50fd744dccb107733263d5714 405 Pfam PF04403 Paraquat-inducible protein A 33 183 3.9E-40 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like BED32_13490 4277f348fd137f6367a534bb8bc50450 180 Pfam PF01638 HxlR-like helix-turn-helix 20 105 1.4E-20 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type BED32_13490 4277f348fd137f6367a534bb8bc50450 180 Gene3D G3DSA:1.10.10.10 1 168 3.2E-50 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13490 4277f348fd137f6367a534bb8bc50450 180 SUPERFAMILY SSF46785 6 143 3.8E-36 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Gene3D G3DSA:3.40.50.10750 524 677 1.9E-135 T 11-10-2018 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 401 701 2.9E-136 T 11-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 PIRSF PIRSF006107 1 709 0.0 T 11-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 SUPERFAMILY SSF52540 1 235 2.55E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Gene3D G3DSA:3.40.50.300 1 224 4.3E-15 T 11-10-2018 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 SUPERFAMILY SSF53659 387 704 5.76E-94 T 11-10-2018 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Gene3D G3DSA:3.40.1390.20 225 360 1.5E-14 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 SUPERFAMILY SSF75138 224 348 6.8E-26 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Pfam PF13500 AAA domain 1 224 1.3E-49 T 11-10-2018 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Pfam PF07085 DRTGG domain 228 339 6.3E-29 T 11-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Pfam PF01515 Phosphate acetyl/butaryl transferase 386 701 1.1E-127 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 BED32_14660 df75c314a3b5325a11a01a186ba35fe7 712 Gene3D G3DSA:3.40.50.10950 393 703 1.9E-135 T 11-10-2018 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 SUPERFAMILY SSF141729 29 161 2.88E-24 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Gene3D G3DSA:2.60.40.2070 756 841 3.7E-27 T 11-10-2018 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Gene3D G3DSA:2.60.40.3110 271 360 9.8E-36 T 11-10-2018 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Gene3D G3DSA:3.10.20.410 48 173 1.6E-37 T 11-10-2018 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Pfam PF00577 Outer membrane usher protein 201 750 1.5E-179 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Gene3D G3DSA:2.60.40.2610 665 755 1.6E-24 T 11-10-2018 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 313 323 - T 11-10-2018 IPR018030 Fimbrial membrane usher, conserved site BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Pfam PF13954 PapC N-terminal domain 30 184 1.1E-34 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 BED32_14060 f0a579b215bb39d8d6a47169d231e1a6 841 Pfam PF13953 PapC C-terminal domain 759 824 3.3E-23 T 11-10-2018 IPR025949 PapC-like, C-terminal domain BED32_01485 9c8a38e551c1e71422eb3b6aeee5086b 227 SUPERFAMILY SSF53271 43 225 2.42E-34 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_01485 9c8a38e551c1e71422eb3b6aeee5086b 227 Gene3D G3DSA:3.40.50.2020 105 226 1.0E-13 T 11-10-2018 BED32_12255 40a8994bc9ba47ab63069d58942519a4 243 Pfam PF06629 MltA-interacting protein MipA 22 242 5.0E-55 T 11-10-2018 IPR010583 MltA-interacting MipA BED32_12255 40a8994bc9ba47ab63069d58942519a4 243 Gene3D G3DSA:2.40.160.20 137 242 1.9E-5 T 11-10-2018 BED32_12255 40a8994bc9ba47ab63069d58942519a4 243 SUPERFAMILY SSF56935 18 242 4.76E-5 T 11-10-2018 BED32_15400 ce5ec7e12b04492bb71c5615207590f4 278 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 9 272 1.5E-113 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 BED32_15400 ce5ec7e12b04492bb71c5615207590f4 278 Gene3D G3DSA:1.10.3720.10 14 273 1.5E-69 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15400 ce5ec7e12b04492bb71c5615207590f4 278 SUPERFAMILY SSF161098 17 266 5.1E-57 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15400 ce5ec7e12b04492bb71c5615207590f4 278 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 6 270 5.1E-110 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 BED32_15400 ce5ec7e12b04492bb71c5615207590f4 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 275 9.4E-30 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_19240 574ef9c9c5ff1e71aa47ab96136b0e99 156 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 9.4E-41 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BED32_19240 574ef9c9c5ff1e71aa47ab96136b0e99 156 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 140 4.6E-52 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 BED32_19240 574ef9c9c5ff1e71aa47ab96136b0e99 156 SUPERFAMILY SSF52540 26 134 1.78E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19240 574ef9c9c5ff1e71aa47ab96136b0e99 156 Gene3D G3DSA:3.40.50.300 1 153 5.8E-47 T 11-10-2018 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 22 232 5.4E-88 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 SUPERFAMILY SSF52402 11 197 5.71E-54 T 11-10-2018 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 11 231 1.2E-93 T 11-10-2018 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 Gene3D G3DSA:3.40.50.620 1 205 9.6E-63 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 37 208 3.8E-50 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 PIRSF PIRSF000857 2 233 6.3E-55 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BED32_04565 d7c0f444241d4ac85dce758afe1e2bca 233 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 1 232 39.09 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 Pfam PF00106 short chain dehydrogenase 14 210 1.5E-50 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 6.3E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 SUPERFAMILY SSF51735 10 243 3.29E-61 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 13 199 0.0042 T 11-10-2018 BED32_11960 b1c555f795fcde79da97190d6204dfc3 253 Gene3D G3DSA:3.40.50.720 1 249 4.7E-72 T 11-10-2018 BED32_11745 43438aaf7b320a6b8c624243a4e44614 274 Gene3D G3DSA:1.10.10.10 17 115 2.3E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11745 43438aaf7b320a6b8c624243a4e44614 274 Pfam PF04492 Bacteriophage replication protein O 19 113 3.5E-35 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_11745 43438aaf7b320a6b8c624243a4e44614 274 TIGRFAM TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain 21 113 1.3E-25 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_15150 00a00c66c4f316a9630adccb5aa4309f 205 Gene3D G3DSA:1.10.357.10 15 204 5.6E-27 T 11-10-2018 BED32_15150 00a00c66c4f316a9630adccb5aa4309f 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 60 2.2E-11 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_15150 00a00c66c4f316a9630adccb5aa4309f 205 SUPERFAMILY SSF48498 100 198 7.53E-16 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_15150 00a00c66c4f316a9630adccb5aa4309f 205 SUPERFAMILY SSF46689 13 79 1.13E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_15150 00a00c66c4f316a9630adccb5aa4309f 205 Pfam PF13977 BetI-type transcriptional repressor, C-terminal 100 199 5.9E-8 T 11-10-2018 IPR039538 BetI-type transcriptional repressor, C-terminal BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 PIRSF PIRSF001495 1 481 2.4E-228 T 11-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 Gene3D G3DSA:3.20.20.240 1 416 1.9E-171 T 11-10-2018 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 Pfam PF06368 Methylaspartate mutase E chain (MutE) 43 481 1.5E-210 T 11-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 Gene3D G3DSA:3.90.970.10 417 481 2.6E-27 T 11-10-2018 IPR014714 Glutamate mutase E subunit, C-terminal domain superfamily GO:0016866|GO:0019670|GO:0031419 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 Hamap MF_01923 Glutamate mutase epsilon subunit [glmE]. 2 481 53.873 T 11-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 TIGRFAM TIGR01503 MthylAspMut_E: methylaspartate mutase, E subunit 4 481 3.7E-240 T 11-10-2018 IPR006396 Glutamate mutase epsilon subunit GO:0019670|GO:0050097 KEGG: 00630+5.4.99.1|KEGG: 00660+5.4.99.1|MetaCyc: PWY-5087|MetaCyc: PWY-5103|MetaCyc: PWY-6728 BED32_01255 8cf3a0f1fedc1080b02749a7c3277a86 481 SUPERFAMILY SSF51703 1 481 5.1E-199 T 11-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 571 1.6E-283 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 Gene3D G3DSA:2.30.40.10 4 485 3.5E-278 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 Gene3D G3DSA:3.20.20.140 134 569 3.5E-278 T 11-10-2018 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 SUPERFAMILY SSF51338 2 183 2.33E-56 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 432 445 3.8E-27 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 300 317 3.8E-27 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 406 421 3.8E-27 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 339 355 3.8E-27 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 SUPERFAMILY SSF51556 135 571 1.45E-178 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 Hamap MF_01953 Urease subunit alpha [ureC]. 2 572 53.625 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 ProSitePatterns PS01120 Urease nickel ligands signature. 132 145 - T 11-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 SUPERFAMILY SSF51338 429 482 6.69E-5 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 Pfam PF01979 Amidohydrolase family 130 459 8.9E-71 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 ProSitePatterns PS00145 Urease active site. 322 338 - T 11-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_16480 acd4a9a4012aa115f4026d4c094d6f06 572 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 124 8.6E-51 T 11-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 BED32_03380 20ac15c057df8e92a9b37dee4caec512 361 SUPERFAMILY SSF56935 121 361 2.84E-7 T 11-10-2018 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.268 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 Pfam PF00572 Ribosomal protein L13 15 138 2.9E-56 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 PIRSF PIRSF002181 1 142 1.2E-50 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 SUPERFAMILY SSF52161 1 140 3.4E-60 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 Gene3D G3DSA:3.90.1180.10 1 142 1.7E-64 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 11-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 BED32_03015 206779735ac24d6f3f6ac319c1bc53b1 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 6.3E-67 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 352 362 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 9 26 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 Gene3D G3DSA:3.50.50.60 5 366 1.7E-146 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 SUPERFAMILY SSF51905 1 375 9.85E-36 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 Pfam PF01266 FAD dependent oxidoreductase 5 323 5.2E-50 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 SUPERFAMILY SSF54373 226 319 4.32E-8 T 11-10-2018 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 313 319 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 33 45 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 17 27 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 78 90 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 347 359 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 4 16 4.8E-28 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 Gene3D G3DSA:3.30.9.10 82 320 1.7E-146 T 11-10-2018 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 381 486 5.5E-12 T 11-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_01430 af8031e17021f06a6cb8e4d8a748b09b 504 Gene3D G3DSA:1.10.8.870 391 460 3.7E-27 T 11-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 BED32_09750 ab305cc3cb56f7a5411656c3079c032b 294 Pfam PF00561 alpha/beta hydrolase fold 9 201 3.2E-12 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_09750 ab305cc3cb56f7a5411656c3079c032b 294 SUPERFAMILY SSF53474 8 266 4.61E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_09750 ab305cc3cb56f7a5411656c3079c032b 294 Gene3D G3DSA:3.40.50.1820 7 294 5.8E-81 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_12060 a010b214102cfff6d49ad467749b9464 98 Gene3D G3DSA:3.30.70.1060 1 98 5.6E-39 T 11-10-2018 BED32_12060 a010b214102cfff6d49ad467749b9464 98 Pfam PF03795 YCII-related domain 1 94 1.8E-29 T 11-10-2018 IPR005545 YCII-related BED32_12060 a010b214102cfff6d49ad467749b9464 98 SUPERFAMILY SSF54909 1 98 1.02E-31 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_13785 28d34fce532015e4ff48f66ff8f54b09 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 6.8E-34 T 11-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 BED32_13785 28d34fce532015e4ff48f66ff8f54b09 106 Gene3D G3DSA:3.30.1390.10 1 106 3.0E-47 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BED32_13785 28d34fce532015e4ff48f66ff8f54b09 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 21 101 28.33 T 11-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS BED32_13785 28d34fce532015e4ff48f66ff8f54b09 106 SUPERFAMILY SSF54736 21 105 4.24E-33 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Gene3D G3DSA:1.10.150.80 528 612 1.3E-29 T 11-10-2018 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Gene3D G3DSA:3.40.50.300 213 344 7.9E-44 T 11-10-2018 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Pfam PF00570 HRDC domain 539 605 1.3E-23 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SMART SM00490 254 335 5.9E-28 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Pfam PF00271 Helicase conserved C-terminal domain 232 334 1.2E-19 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Pfam PF00270 DEAD/DEAH box helicase 32 189 4.9E-21 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Pfam PF16124 RecQ zinc-binding 347 408 1.3E-15 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SMART SM00956 415 518 8.3E-53 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 18 607 1.2E-265 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 468 2.7E-200 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SMART SM00341 535 615 8.4E-28 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Gene3D G3DSA:1.10.10.10 345 527 1.7E-50 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SMART SM00487 26 222 2.5E-32 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SUPERFAMILY SSF47819 536 611 5.01E-26 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Pfam PF09382 RQC domain 410 521 2.0E-37 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SUPERFAMILY SSF52540 212 461 6.18E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 SUPERFAMILY SSF52540 19 205 1.27E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20290 cc78bc3f5fb1a9e234a991f7b9c9b59d 620 Gene3D G3DSA:3.40.50.300 6 212 6.0E-87 T 11-10-2018 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 28 490 7.8E-173 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 Gene3D G3DSA:3.30.1370.120 171 265 6.3E-12 T 11-10-2018 IPR038591 NolW-like superfamily BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 Gene3D G3DSA:3.55.50.30 14 99 5.3E-23 T 11-10-2018 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 435 468 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 Pfam PF00263 Bacterial type II and III secretion system protein 330 486 2.0E-35 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 269 289 1.7E-39 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 343 362 1.7E-39 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 468 487 1.7E-39 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 187 204 1.7E-39 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 377 392 1.7E-39 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 Pfam PF03958 Bacterial type II/III secretion system short domain 175 266 3.1E-16 T 11-10-2018 IPR005644 NolW-like BED32_19670 fc106c91dd98a2e882583ac67f8f57e0 493 Gene3D G3DSA:3.30.1370.120 101 168 2.6E-29 T 11-10-2018 IPR038591 NolW-like superfamily BED32_02210 181225b40bb54c12735c749d6f65cb33 916 Gene3D G3DSA:3.30.200.20 744 819 1.6E-25 T 11-10-2018 BED32_02210 181225b40bb54c12735c749d6f65cb33 916 SUPERFAMILY SSF56112 749 885 3.6E-10 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_02210 181225b40bb54c12735c749d6f65cb33 916 Gene3D G3DSA:1.10.510.10 820 914 4.5E-23 T 11-10-2018 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 SMART SM00927 59 157 3.4E-66 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 SUPERFAMILY SSF52980 10 227 1.55E-82 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 Gene3D G3DSA:3.40.600.10 6 228 1.0E-53 T 11-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 Pfam PF02976 DNA mismatch repair enzyme MutH 59 157 1.8E-34 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 11 226 1.3E-106 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 BED32_17085 dc131d78a05219b501ebd3ce13a2951a 228 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 228 153.969 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 806 32.614 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 PIRSF PIRSF500064 2 813 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 798 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 SUPERFAMILY SSF69593 270 487 1.18E-25 T 11-10-2018 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 Pfam PF01553 Acyltransferase 281 423 3.6E-26 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 SMART SM00563 299 426 6.3E-28 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_02225 bd114575a92f3c7f51526ccf9014d393 822 PIRSF PIRSF000437 19 810 0.0 T 11-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.024 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.9E-103 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 PIRSF PIRSF005650 4 248 2.4E-90 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 Gene3D G3DSA:3.40.1160.10 3 247 1.7E-75 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 Pfam PF00696 Amino acid kinase family 11 219 4.3E-27 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_16880 bcf917503014c9fe5d4c0e1bbe072370 248 SUPERFAMILY SSF53633 7 240 9.95E-73 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 SUPERFAMILY SSF53748 3 383 3.3E-144 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PIRSF PIRSF000724 1 387 2.1E-132 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 Gene3D G3DSA:3.40.50.1260 10 378 1.5E-154 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 Gene3D G3DSA:3.40.50.1260 165 373 1.5E-154 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 Pfam PF00162 Phosphoglycerate kinase 6 373 9.4E-139 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 11-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 39.149 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_04450 44847221ce44b2f0e78e2a7b3469ac47 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.9E-82 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02520 2f7d666c70f82eeb99d05a6e7af2935f 119 Pfam PF10828 Protein of unknown function (DUF2570) 13 109 3.7E-7 T 11-10-2018 IPR022538 Protein of unknown function DUF2570 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 11 335 2.4E-148 T 11-10-2018 IPR014189 Quinone oxidoreductase PIG3 Reactome: R-HSA-6803205 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 Gene3D G3DSA:3.40.50.720 130 273 3.9E-104 T 11-10-2018 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 Pfam PF00107 Zinc-binding dehydrogenase 161 285 1.1E-26 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 Gene3D G3DSA:3.90.180.10 24 334 3.9E-104 T 11-10-2018 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 SMART SM00829 20 334 1.6E-56 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 38 114 4.2E-10 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 SUPERFAMILY SSF51735 122 298 1.75E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_09445 6b247dd0fada0224ddf43128da2ac513 336 SUPERFAMILY SSF50129 11 149 4.41E-37 T 11-10-2018 IPR011032 GroES-like superfamily BED32_11485 9ff1f60bd00b2c0372e8a79f6f5359a7 327 Gene3D G3DSA:3.40.50.2300 132 317 2.4E-132 T 11-10-2018 BED32_11485 9ff1f60bd00b2c0372e8a79f6f5359a7 327 Gene3D G3DSA:3.40.50.2300 27 308 2.4E-132 T 11-10-2018 BED32_11485 9ff1f60bd00b2c0372e8a79f6f5359a7 327 PIRSF PIRSF002816 2 326 1.4E-149 T 11-10-2018 IPR026266 L-arabinose-binding periplasmic protein GO:0042882 BED32_11485 9ff1f60bd00b2c0372e8a79f6f5359a7 327 SUPERFAMILY SSF53822 26 324 3.77E-68 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_11485 9ff1f60bd00b2c0372e8a79f6f5359a7 327 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 26 319 9.2E-85 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_09840 a53072acb055374263a4eed4bda428bb 566 Gene3D G3DSA:3.30.750.24 446 563 6.1E-20 T 11-10-2018 IPR036513 STAS domain superfamily BED32_09840 a53072acb055374263a4eed4bda428bb 566 ProSitePatterns PS01130 SLC26A transporters signature. 58 79 - T 11-10-2018 IPR018045 Sulphate anion transporter, conserved site GO:0008271|GO:0008272 Reactome: R-HSA-427601 BED32_09840 a53072acb055374263a4eed4bda428bb 566 Pfam PF00916 Sulfate permease family 29 414 2.4E-81 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 BED32_09840 a53072acb055374263a4eed4bda428bb 566 TIGRFAM TIGR00815 sulP: sulfate permease 18 559 9.4E-132 T 11-10-2018 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 BED32_09840 a53072acb055374263a4eed4bda428bb 566 SUPERFAMILY SSF52091 456 563 4.71E-13 T 11-10-2018 IPR036513 STAS domain superfamily BED32_09840 a53072acb055374263a4eed4bda428bb 566 Pfam PF01740 STAS domain 457 558 2.4E-7 T 11-10-2018 IPR002645 STAS domain BED32_09845 b6cf6b6aae72d10583fd399b79a7bc38 372 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 192 351 3.9E-43 T 11-10-2018 IPR000160 GGDEF domain BED32_09845 b6cf6b6aae72d10583fd399b79a7bc38 372 SMART SM00267 183 351 2.1E-50 T 11-10-2018 IPR000160 GGDEF domain BED32_09845 b6cf6b6aae72d10583fd399b79a7bc38 372 SUPERFAMILY SSF55073 199 350 2.67E-42 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_09845 b6cf6b6aae72d10583fd399b79a7bc38 372 Gene3D G3DSA:3.30.70.270 186 352 5.5E-50 T 11-10-2018 BED32_09845 b6cf6b6aae72d10583fd399b79a7bc38 372 Pfam PF00990 Diguanylate cyclase, GGDEF domain 194 347 1.1E-40 T 11-10-2018 IPR000160 GGDEF domain BED32_21020 c200214985fd17f4d5d055aa1a5822c9 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 3.3E-67 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_21020 c200214985fd17f4d5d055aa1a5822c9 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 35.953 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 BED32_21020 c200214985fd17f4d5d055aa1a5822c9 213 Gene3D G3DSA:3.40.50.2020 1 213 3.1E-78 T 11-10-2018 BED32_21020 c200214985fd17f4d5d055aa1a5822c9 213 SUPERFAMILY SSF53271 2 212 4.12E-50 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_21020 c200214985fd17f4d5d055aa1a5822c9 213 Pfam PF00156 Phosphoribosyl transferase domain 49 159 2.6E-12 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 50 156 2.2E-15 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Pfam PF12002 MgsA AAA+ ATPase C terminal 265 431 3.4E-64 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Gene3D G3DSA:1.10.3710.10 343 444 1.1E-37 T 11-10-2018 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Pfam PF16193 AAA C-terminal domain 185 264 8.9E-22 T 11-10-2018 IPR032423 AAA C-terminal domain BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Gene3D G3DSA:3.40.50.300 1 161 1.6E-46 T 11-10-2018 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 SUPERFAMILY SSF48019 249 431 5.67E-71 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Gene3D G3DSA:1.20.272.10 238 342 9.9E-44 T 11-10-2018 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 Gene3D G3DSA:1.10.8.60 162 237 1.0E-28 T 11-10-2018 BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 SUPERFAMILY SSF52540 3 231 7.76E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13735 5e9bf411abeaae159e6c3555595be20f 444 SMART SM00382 46 162 1.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01860 56eb1ce5c3d8d7e68c47ce7e27e7a1f6 64 Gene3D G3DSA:1.10.10.1100 1 57 1.9E-19 T 11-10-2018 BED32_01860 56eb1ce5c3d8d7e68c47ce7e27e7a1f6 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 4.2E-15 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 SMART SM00938 4 105 9.7E-69 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 83 103 1.2E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 2 17 1.2E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 23 41 1.2E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 PRINTS PR00340 P-II protein signature 52 75 1.2E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.4E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 PIRSF PIRSF039144 1 112 4.5E-58 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 Gene3D G3DSA:3.30.70.120 1 112 7.8E-49 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal BED32_16150 1e929a88e07fba04ea99e462ea391b5c 112 SUPERFAMILY SSF54913 1 112 5.4E-47 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta BED32_20190 e2920b04b1327f740abc8394330bf65c 222 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20190 e2920b04b1327f740abc8394330bf65c 222 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 6.7E-94 T 11-10-2018 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 BED32_20190 e2920b04b1327f740abc8394330bf65c 222 Pfam PF00005 ABC transporter 18 165 8.4E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_20190 e2920b04b1327f740abc8394330bf65c 222 Gene3D G3DSA:3.40.50.300 1 221 4.6E-62 T 11-10-2018 BED32_20190 e2920b04b1327f740abc8394330bf65c 222 SMART SM00382 27 214 3.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20190 e2920b04b1327f740abc8394330bf65c 222 SUPERFAMILY SSF52540 1 216 2.18E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09975 84038984c508ef4841743507581112f4 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BED32_09975 84038984c508ef4841743507581112f4 493 Gene3D G3DSA:3.40.309.10 250 440 2.7E-142 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_09975 84038984c508ef4841743507581112f4 493 SUPERFAMILY SSF53720 4 458 2.23E-122 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_09975 84038984c508ef4841743507581112f4 493 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 58.148 T 11-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 BED32_09975 84038984c508ef4841743507581112f4 493 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 6 489 2.5E-260 T 11-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 BED32_09975 84038984c508ef4841743507581112f4 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BED32_09975 84038984c508ef4841743507581112f4 493 Pfam PF00171 Aldehyde dehydrogenase family 12 461 6.1E-121 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_09975 84038984c508ef4841743507581112f4 493 Gene3D G3DSA:3.40.605.10 10 452 2.7E-142 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_04430 54ba75055240c788b2a25c58ae51839f 104 SUPERFAMILY SSF50022 1 101 1.7E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BED32_04430 54ba75055240c788b2a25c58ae51839f 104 Gene3D G3DSA:2.102.10.10 1 102 5.9E-32 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BED32_04430 54ba75055240c788b2a25c58ae51839f 104 Pfam PF00355 Rieske [2Fe-2S] domain 3 89 7.1E-20 T 11-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 Gene3D G3DSA:1.10.287.40 1 104 1.1E-18 T 11-10-2018 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 228 406 3.9E-35 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 Gene3D G3DSA:3.30.930.10 105 430 1.9E-115 T 11-10-2018 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 SUPERFAMILY SSF55681 116 425 1.49E-99 T 11-10-2018 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PRINTS PR00981 Seryl-tRNA synthetase signature 282 295 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PRINTS PR00981 Seryl-tRNA synthetase signature 270 282 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PRINTS PR00981 Seryl-tRNA synthetase signature 322 335 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PRINTS PR00981 Seryl-tRNA synthetase signature 357 373 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PRINTS PR00981 Seryl-tRNA synthetase signature 339 355 1.2E-33 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 PIRSF PIRSF001529 1 430 1.0E-182 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 423 3.5E-181 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.2E-29 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 SUPERFAMILY SSF46589 1 112 2.62E-30 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BED32_13730 889cec898a5415bf21c2fd885674ed96 430 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 428 41.668 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 BED32_02780 f95643452d5103479b449995d933be86 128 SUPERFAMILY SSF47175 23 128 1.37E-33 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 BED32_02780 f95643452d5103479b449995d933be86 128 Pfam PF07361 Cytochrome b562 25 128 7.4E-31 T 11-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 BED32_02780 f95643452d5103479b449995d933be86 128 Gene3D G3DSA:1.20.120.10 18 128 1.7E-41 T 11-10-2018 BED32_02780 f95643452d5103479b449995d933be86 128 PIRSF PIRSF000029 1 128 5.5E-55 T 11-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 26 188 4.5E-43 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 216 463 2.8E-95 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 218 230 - T 11-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 SUPERFAMILY SSF48179 283 488 4.76E-66 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 Gene3D G3DSA:3.40.50.720 7 281 1.0E-106 T 11-10-2018 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 SUPERFAMILY SSF51735 3 282 1.65E-95 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 Gene3D G3DSA:1.10.1040.10 282 490 4.5E-79 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 PRINTS PR00084 Mannitol dehydrogenase signature 27 37 7.5E-22 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 PRINTS PR00084 Mannitol dehydrogenase signature 218 231 7.5E-22 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 PRINTS PR00084 Mannitol dehydrogenase signature 179 192 7.5E-22 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_14140 9881d86b362e9bfbd5b9a18e1d886b4f 490 PRINTS PR00084 Mannitol dehydrogenase signature 248 263 7.5E-22 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 3.2E-13 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Gene3D G3DSA:3.40.50.300 550 764 3.1E-92 T 11-10-2018 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 1.3E-10 T 11-10-2018 IPR004176 Clp, N-terminal BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 5.1E-15 T 11-10-2018 IPR004176 Clp, N-terminal BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Gene3D G3DSA:1.10.8.60 766 857 1.9E-26 T 11-10-2018 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SUPERFAMILY SSF81923 4 156 7.75E-43 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SMART SM00382 597 738 5.3E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SMART SM00382 198 344 1.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Gene3D G3DSA:1.10.1780.10 1 147 1.3E-35 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 760 2.6E-57 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.6E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SUPERFAMILY SSF52540 546 851 1.59E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SMART SM01086 766 855 1.2E-36 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 844 9.4E-26 T 11-10-2018 IPR019489 Clp ATPase, C-terminal BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 SUPERFAMILY SSF52540 159 545 1.17E-99 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Gene3D G3DSA:3.40.50.300 148 342 2.5E-74 T 11-10-2018 BED32_05035 ad45e49c89024c89b6eaafeab4d2d079 857 Gene3D G3DSA:3.40.50.300 343 544 1.1E-70 T 11-10-2018 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 SMART SM00382 286 482 8.5E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 SMART SM00382 29 219 3.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 Pfam PF00005 ABC transporter 278 433 3.2E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 4 502 3.8E-265 T 11-10-2018 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 Gene3D G3DSA:3.40.50.300 256 509 2.3E-43 T 11-10-2018 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 Gene3D G3DSA:3.40.50.300 3 240 1.5E-51 T 11-10-2018 BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 SUPERFAMILY SSF52540 244 485 6.88E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 SUPERFAMILY SSF52540 3 229 2.55E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_20600 e8bc69a2de459de6c270c5a1a8d839ad 510 Pfam PF00005 ABC transporter 20 171 3.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 Hamap MF_01234 N-acetylmannosamine kinase [nanK]. 2 296 47.906 T 11-10-2018 IPR023945 N-acetylmannosamine kinase, bacterial GO:0005524|GO:0008270|GO:0009384|GO:0019262 KEGG: 00520+2.7.1.60|MetaCyc: PWY-6138 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 ProSitePatterns PS01125 ROK family signature. 135 162 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 SUPERFAMILY SSF53067 2 294 1.65E-50 T 11-10-2018 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 Gene3D G3DSA:3.30.420.40 6 289 8.5E-76 T 11-10-2018 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 Gene3D G3DSA:3.30.420.40 119 276 8.5E-76 T 11-10-2018 BED32_15425 9ad990fa0cd8f394b25e7607de9eb225 296 Pfam PF00480 ROK family 5 294 1.2E-68 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 9.2E-6 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 9.2E-6 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 Pfam PF00117 Glutamine amidotransferase class-I 3 189 1.4E-53 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 Gene3D G3DSA:3.40.50.880 1 191 7.2E-61 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 7.5E-14 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 7.5E-14 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 7.5E-14 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 190 4.9E-93 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 SUPERFAMILY SSF52317 1 190 2.13E-53 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.5E-36 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 47 56 1.5E-36 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 2 16 1.5E-36 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 74 85 1.5E-36 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 119 131 1.5E-36 T 11-10-2018 BED32_01705 5a80d57a5cca6a6698005ab1e16a834b 191 PRINTS PR00097 Anthranilate synthase component II signature 99 107 1.5E-36 T 11-10-2018 BED32_06395 1ed302d629388ec3df7a9e67ef5bb005 269 Pfam PF01963 TraB family 31 265 1.1E-37 T 11-10-2018 IPR002816 Pheromone shutdown, TraB BED32_21045 bb17f87a2e4b29c73eb64ec5a403875e 69 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 14 62 6.4E-11 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA BED32_21045 bb17f87a2e4b29c73eb64ec5a403875e 69 SUPERFAMILY SSF46955 14 64 5.68E-6 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 6.0E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 Gene3D G3DSA:3.40.50.720 1 253 1.2E-81 T 11-10-2018 BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 8.4E-14 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 TIGRFAM TIGR01832 kduD: 2-deoxy-D-gluconate 3-dehydrogenase 6 253 3.6E-135 T 11-10-2018 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase GO:0008678|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.127|MetaCyc: PWY-6507|MetaCyc: PWY-7562 BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 5.4E-57 T 11-10-2018 BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 SUPERFAMILY SSF51735 9 252 7.16E-77 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_10520 7f1ac5539550b3f6c6400f0388c1306f 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 SUPERFAMILY SSF52540 75 361 2.67E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 SMART SM00490 259 340 2.3E-32 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 Pfam PF00271 Helicase conserved C-terminal domain 236 339 3.9E-26 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 Gene3D G3DSA:3.40.50.300 215 395 5.8E-49 T 11-10-2018 BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 Gene3D G3DSA:3.40.50.300 1 211 1.9E-76 T 11-10-2018 BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 SMART SM00487 20 223 4.7E-58 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 450 50.982 T 11-10-2018 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BED32_08065 ebae8205602dddf2e9212a7ca3b167af 451 Pfam PF00270 DEAD/DEAH box helicase 25 195 4.7E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.507 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 Gene3D G3DSA:2.40.50.140 1 124 1.2E-63 T 11-10-2018 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 SUPERFAMILY SSF50249 3 123 2.23E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PIRSF PIRSF002133 1 124 1.9E-54 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 7.5E-43 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.1E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01840 3fda9daf32cf0360a89b79e758bae6a6 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 9.8E-71 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10515 48952d393fc2714fc00ef7ec237f98ed 555 PIRSF PIRSF001432 1 555 1.6E-283 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 BED32_10515 48952d393fc2714fc00ef7ec237f98ed 555 Pfam PF06917 Periplasmic pectate lyase 12 540 1.0E-122 T 11-10-2018 IPR010702 Periplasmic pectate lyase GO:0016837|GO:0042597|GO:0045490 BED32_10515 48952d393fc2714fc00ef7ec237f98ed 555 Gene3D G3DSA:1.50.10.20 322 519 6.2E-37 T 11-10-2018 BED32_10515 48952d393fc2714fc00ef7ec237f98ed 555 Gene3D G3DSA:1.50.10.20 16 309 1.4E-96 T 11-10-2018 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 152 6.2E-62 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 155 7.0E-81 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PIRSF PIRSF006160 1 162 2.7E-66 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 Gene3D G3DSA:3.30.1360.80 1 171 6.9E-73 T 11-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 SUPERFAMILY SSF63411 4 162 1.56E-67 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 3.1E-50 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 3.1E-50 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 3.1E-50 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 3.1E-50 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 3.1E-50 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_04950 8ad39ffcd4bfc9c15157b348a93d0e0b 171 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 35.733 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 SUPERFAMILY SSF46894 144 208 3.33E-19 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 SUPERFAMILY SSF52172 2 132 5.27E-33 T 11-10-2018 IPR011006 CheY-like superfamily BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 SMART SM00421 146 203 6.0E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 Gene3D G3DSA:3.40.50.12740 3 208 1.1E-61 T 11-10-2018 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 SMART SM00448 3 116 3.8E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 Pfam PF00072 Response regulator receiver domain 6 116 2.9E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 1.5E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_19685 c4a3db3bcf43ec5e12c2c2888a7e1271 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 SMART SM00347 46 148 2.6E-31 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 108 124 1.9E-22 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 88 1.9E-22 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 89 104 1.9E-22 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 PRINTS PR00598 Bacterial regulatory protein MarR family signature 138 158 1.9E-22 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 SUPERFAMILY SSF46785 21 165 3.18E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 ProSitePatterns PS01117 MarR-type HTH domain signature. 87 121 - T 11-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 Pfam PF01047 MarR family 53 112 2.5E-16 T 11-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 BED32_05145 13674c19774733f8dd3f20cdeeb3424d 170 Gene3D G3DSA:1.10.10.10 8 164 8.3E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Gene3D G3DSA:2.40.30.110 277 365 1.2E-33 T 11-10-2018 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Gene3D G3DSA:4.10.1250.10 232 276 5.4E-26 T 11-10-2018 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 5.7E-153 T 11-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 43.615 T 11-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 254 8.7E-82 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Gene3D G3DSA:3.30.1360.120 6 231 2.8E-86 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Gene3D G3DSA:3.30.70.1400 51 138 2.8E-86 T 11-10-2018 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 263 353 5.2E-19 T 11-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 SUPERFAMILY SSF101790 270 360 8.99E-26 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 PIRSF PIRSF006487 1 362 8.9E-80 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 BED32_17490 5c674e1dcb4851a64d720d0889310bce 365 SUPERFAMILY SSF103025 3 277 1.57E-90 T 11-10-2018 BED32_20270 920f2348807ee5f4d32b60890be1b011 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 260 3.1E-63 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_20270 920f2348807ee5f4d32b60890be1b011 269 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-10-2018 BED32_20270 920f2348807ee5f4d32b60890be1b011 269 SUPERFAMILY SSF56784 1 265 3.83E-69 T 11-10-2018 IPR036412 HAD-like superfamily BED32_20270 920f2348807ee5f4d32b60890be1b011 269 Gene3D G3DSA:3.40.50.1000 5 256 4.8E-81 T 11-10-2018 IPR023214 HAD superfamily BED32_20270 920f2348807ee5f4d32b60890be1b011 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 260 8.0E-62 T 11-10-2018 BED32_20270 920f2348807ee5f4d32b60890be1b011 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 7.5E-27 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_20270 920f2348807ee5f4d32b60890be1b011 269 Gene3D G3DSA:3.30.1240.10 82 186 4.8E-81 T 11-10-2018 BED32_13355 0b97e368e0c5b7268c097e5c0e4c6eb7 222 SUPERFAMILY SSF48452 84 208 2.42E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_13355 0b97e368e0c5b7268c097e5c0e4c6eb7 222 Gene3D G3DSA:1.25.40.10 127 219 3.0E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_21220 be0ec28a7c14e5b00b8bcfa90f91ae14 81 SUPERFAMILY SSF47413 2 68 2.81E-25 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_21220 be0ec28a7c14e5b00b8bcfa90f91ae14 81 Pfam PF13693 Winged helix-turn-helix DNA-binding 4 75 5.1E-31 T 11-10-2018 IPR038722 Ner, winged helix-turn-helix DNA-binding domain BED32_21220 be0ec28a7c14e5b00b8bcfa90f91ae14 81 Gene3D G3DSA:1.10.260.40 1 68 9.7E-31 T 11-10-2018 BED32_10805 5c1c3cf553f74a54c41c5e28ddf8028c 123 Pfam PF01521 Iron-sulphur cluster biosynthesis 19 119 4.0E-18 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 BED32_10805 5c1c3cf553f74a54c41c5e28ddf8028c 123 Gene3D G3DSA:2.60.300.12 18 123 1.9E-33 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_10805 5c1c3cf553f74a54c41c5e28ddf8028c 123 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 19 122 9.8E-32 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 BED32_10805 5c1c3cf553f74a54c41c5e28ddf8028c 123 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 104 121 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 BED32_10805 5c1c3cf553f74a54c41c5e28ddf8028c 123 SUPERFAMILY SSF89360 19 112 1.73E-26 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 153 7.0E-31 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 6.4E-25 T 11-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 SUPERFAMILY SSF46785 3 77 8.98E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.5E-23 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.5E-23 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.5E-23 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.5E-23 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 11 151 1.9E-45 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 Gene3D G3DSA:3.30.1360.40 79 156 1.5E-29 T 11-10-2018 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 148 5.7E-21 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 59.237 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 SUPERFAMILY SSF55252 82 151 2.35E-18 T 11-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 BED32_19040 04a8818ab8c3c79611538e19dc06da3c 156 Gene3D G3DSA:1.10.10.10 1 78 1.1E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09565 43e57e58b52921e69823a1c730804290 214 Gene3D G3DSA:1.10.287.500 35 168 1.7E-51 T 11-10-2018 BED32_09565 43e57e58b52921e69823a1c730804290 214 PIRSF PIRSF002884 1 214 1.3E-88 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BED32_09565 43e57e58b52921e69823a1c730804290 214 SUPERFAMILY SSF75708 13 213 1.7E-66 T 11-10-2018 BED32_09565 43e57e58b52921e69823a1c730804290 214 Pfam PF04344 Chemotaxis phosphatase, CheZ 16 214 5.9E-77 T 11-10-2018 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 BED32_09565 43e57e58b52921e69823a1c730804290 214 Gene3D G3DSA:1.20.5.590 6 34 5.7E-11 T 11-10-2018 BED32_05185 7668ced82d3d0beb9999444929f4e476 279 Gene3D G3DSA:1.10.10.10 1 76 1.2E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_05185 7668ced82d3d0beb9999444929f4e476 279 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 71 9.5E-13 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_05185 7668ced82d3d0beb9999444929f4e476 279 Gene3D G3DSA:3.40.50.10490 90 274 1.7E-27 T 11-10-2018 BED32_05185 7668ced82d3d0beb9999444929f4e476 279 SUPERFAMILY SSF53697 94 254 9.57E-13 T 11-10-2018 BED32_05185 7668ced82d3d0beb9999444929f4e476 279 Pfam PF01380 SIS domain 124 247 2.9E-12 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_05185 7668ced82d3d0beb9999444929f4e476 279 SUPERFAMILY SSF46689 2 79 2.69E-18 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_02460 168c29c99670908c2c31843cdbee6acb 639 SUPERFAMILY SSF141868 399 630 1.57E-33 T 11-10-2018 IPR035919 EAL domain superfamily BED32_02460 168c29c99670908c2c31843cdbee6acb 639 Pfam PF00990 Diguanylate cyclase, GGDEF domain 224 376 7.1E-20 T 11-10-2018 IPR000160 GGDEF domain BED32_02460 168c29c99670908c2c31843cdbee6acb 639 SUPERFAMILY SSF55073 230 383 1.45E-17 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_02460 168c29c99670908c2c31843cdbee6acb 639 SMART SM00267 213 382 1.3E-14 T 11-10-2018 IPR000160 GGDEF domain BED32_02460 168c29c99670908c2c31843cdbee6acb 639 Pfam PF00563 EAL domain 400 627 4.6E-38 T 11-10-2018 IPR001633 EAL domain BED32_02460 168c29c99670908c2c31843cdbee6acb 639 Gene3D G3DSA:3.20.20.450 391 628 3.5E-31 T 11-10-2018 IPR035919 EAL domain superfamily BED32_02460 168c29c99670908c2c31843cdbee6acb 639 Gene3D G3DSA:3.30.70.270 207 383 2.4E-19 T 11-10-2018 BED32_02460 168c29c99670908c2c31843cdbee6acb 639 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 33 130 5.6E-30 T 11-10-2018 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 BED32_02460 168c29c99670908c2c31843cdbee6acb 639 SMART SM00052 392 632 3.3E-22 T 11-10-2018 IPR001633 EAL domain BED32_11340 54940c4e134599cacfc6873634086575 555 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 553 4.2E-199 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_11340 54940c4e134599cacfc6873634086575 555 SUPERFAMILY SSF52467 187 350 7.89E-55 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_11340 54940c4e134599cacfc6873634086575 555 Gene3D G3DSA:3.40.50.970 1 181 2.5E-68 T 11-10-2018 BED32_11340 54940c4e134599cacfc6873634086575 555 SUPERFAMILY SSF52518 357 552 9.37E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_11340 54940c4e134599cacfc6873634086575 555 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 530 6.9E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_11340 54940c4e134599cacfc6873634086575 555 Gene3D G3DSA:3.40.50.970 351 553 9.7E-63 T 11-10-2018 BED32_11340 54940c4e134599cacfc6873634086575 555 SUPERFAMILY SSF52518 1 175 1.35E-59 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_11340 54940c4e134599cacfc6873634086575 555 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 171 1.3E-58 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_11340 54940c4e134599cacfc6873634086575 555 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 419 438 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_11340 54940c4e134599cacfc6873634086575 555 Gene3D G3DSA:3.40.50.1220 187 349 2.1E-54 T 11-10-2018 BED32_11340 54940c4e134599cacfc6873634086575 555 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 326 1.4E-42 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 SUPERFAMILY SSF53623 95 308 3.27E-49 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Gene3D G3DSA:3.90.190.20 314 451 2.4E-28 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 SUPERFAMILY SSF53244 312 448 1.1E-34 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Pfam PF02875 Mur ligase family, glutamate ligase domain 312 360 5.6E-9 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 450 58.951 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 1.3E-255 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Pfam PF08245 Mur ligase middle domain 108 291 3.4E-18 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Gene3D G3DSA:3.40.50.720 1 90 4.6E-36 T 11-10-2018 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Pfam PF01225 Mur ligase family, catalytic domain 2 98 7.2E-19 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 Gene3D G3DSA:3.40.1190.10 91 313 3.4E-51 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_19050 139d7217ceaa957d43179dc2e4d6d79a 461 SUPERFAMILY SSF51984 1 90 5.76E-24 T 11-10-2018 BED32_20010 a9ae57de5451831cb9bb5968517fdd04 210 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 1 72 4.4E-26 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BED32_20010 a9ae57de5451831cb9bb5968517fdd04 210 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 132 14.691 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 BED32_20010 a9ae57de5451831cb9bb5968517fdd04 210 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 13 32 1.7E-17 T 11-10-2018 BED32_20010 a9ae57de5451831cb9bb5968517fdd04 210 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 32 50 1.7E-17 T 11-10-2018 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 PIRSF PIRSF036918 1 611 6.3E-235 T 11-10-2018 IPR017069 Maltodextrin glucosidase GO:0004558|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.20|KEGG: 00500+3.2.1.20|MetaCyc: PWY-842 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 SUPERFAMILY SSF51011 532 610 1.7E-8 T 11-10-2018 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 Pfam PF02903 Alpha amylase, N-terminal ig-like domain 5 107 9.3E-5 T 11-10-2018 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain GO:0004553|GO:0005975 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 SMART SM00642 129 523 4.2E-82 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 Gene3D G3DSA:2.60.40.1180 527 610 8.5E-7 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 Gene3D G3DSA:3.20.20.80 118 525 1.3E-126 T 11-10-2018 BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 SUPERFAMILY SSF51445 119 532 3.35E-94 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_05880 6091f4ccdf1766ba5e3a6a838e154094 612 Pfam PF00128 Alpha amylase, catalytic domain 179 495 1.0E-74 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 SMART SM00530 17 76 1.1E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 Pfam PF00717 Peptidase S24-like 145 220 5.7E-13 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 Gene3D G3DSA:1.10.260.40 1 90 8.7E-35 T 11-10-2018 BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 SUPERFAMILY SSF47413 4 90 2.95E-21 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 Gene3D G3DSA:2.10.109.10 101 240 9.4E-48 T 11-10-2018 BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 SUPERFAMILY SSF51306 138 235 2.62E-24 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_05340 35bd76bf26a96953ad5878741c09c32e 240 Pfam PF01381 Helix-turn-helix 27 76 2.1E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_04910 ae416e5108da97f1583260d947373b1a 875 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 854 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 SUPERFAMILY SSF55186 552 711 1.11E-52 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BED32_04910 ae416e5108da97f1583260d947373b1a 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 306 319 2.1E-33 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 236 249 2.1E-33 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 2.1E-33 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 282 298 2.1E-33 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 PRINTS PR00980 Alanyl-tRNA synthetase signature 209 220 2.1E-33 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Gene3D G3DSA:3.30.54.20 624 677 3.6E-51 T 11-10-2018 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Gene3D G3DSA:3.10.310.40 764 872 2.9E-35 T 11-10-2018 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 875 205.898 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 653 696 9.0E-17 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Pfam PF02272 DHHA1 domain 733 871 3.2E-30 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Pfam PF01411 tRNA synthetases class II (A) 7 555 4.0E-234 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 SUPERFAMILY SSF55681 4 255 7.21E-108 T 11-10-2018 BED32_04910 ae416e5108da97f1583260d947373b1a 875 SMART SM00863 653 696 2.5E-20 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BED32_04910 ae416e5108da97f1583260d947373b1a 875 SUPERFAMILY SSF50447 456 552 3.46E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_04910 ae416e5108da97f1583260d947373b1a 875 Gene3D G3DSA:2.40.30.130 462 552 4.3E-10 T 11-10-2018 BED32_04910 ae416e5108da97f1583260d947373b1a 875 SUPERFAMILY SSF101353 256 465 1.24E-61 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Gene3D G3DSA:3.30.930.10 2 252 4.7E-123 T 11-10-2018 BED32_04910 ae416e5108da97f1583260d947373b1a 875 Gene3D G3DSA:3.30.980.10 563 697 3.6E-51 T 11-10-2018 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 SUPERFAMILY SSF48498 85 203 1.25E-13 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 2.8E-18 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 4.6E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 4.6E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 203 8.3E-55 T 11-10-2018 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 SUPERFAMILY SSF46689 2 67 1.28E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_06255 01c57d8b63f08ddb47da922f766b554d 216 Gene3D G3DSA:1.10.357.10 1 215 8.7E-79 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Pfam PF01590 GAF domain 18 151 2.3E-15 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 SUPERFAMILY SSF47831 200 309 9.81E-27 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 630 645 7.6E-25 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 666 678 7.6E-25 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 613 628 7.6E-25 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 7.6E-25 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Gene3D G3DSA:3.30.450.40 1 163 3.3E-44 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Gene3D G3DSA:3.50.30.10 175 399 3.1E-57 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 SUPERFAMILY SSF51621 420 715 9.16E-93 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 SMART SM00065 17 164 5.0E-27 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 176 730 2.1E-132 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 SUPERFAMILY SSF55781 2 159 1.68E-30 T 11-10-2018 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 419 707 4.8E-101 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 320 391 6.4E-16 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 SUPERFAMILY SSF52009 293 413 1.83E-26 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 613 631 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Gene3D G3DSA:1.10.274.10 190 313 3.1E-57 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 174 294 4.8E-24 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 BED32_17070 d8a1ed7db6941b0c6ab26c9a1c4d7df1 748 Gene3D G3DSA:3.20.20.60 400 741 3.4E-99 T 11-10-2018 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 Gene3D G3DSA:2.40.30.10 2 98 2.5E-23 T 11-10-2018 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 Pfam PF00175 Oxidoreductase NAD-binding domain 108 211 4.7E-22 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 SUPERFAMILY SSF63380 3 97 5.2E-20 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 Pfam PF00970 Oxidoreductase FAD-binding domain 6 96 1.1E-4 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 31 43 1.1E-12 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 132 141 1.1E-12 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 91 100 1.1E-12 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 107 126 1.1E-12 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 PRINTS PR00410 Phenol hydroxylase reductase family signature 47 54 1.1E-12 T 11-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 Gene3D G3DSA:3.40.50.80 99 233 1.1E-27 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_19980 15bdb483736b07255c2daef4f3b96cda 233 SUPERFAMILY SSF52343 100 231 1.19E-33 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_13070 0159223bb03a7ab3058bcfd1e737fe97 180 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 6.5E-69 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA BED32_13070 0159223bb03a7ab3058bcfd1e737fe97 180 Gene3D G3DSA:3.40.50.1820 1 179 2.0E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_13070 0159223bb03a7ab3058bcfd1e737fe97 180 SUPERFAMILY SSF53474 1 176 9.87E-7 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_13070 0159223bb03a7ab3058bcfd1e737fe97 180 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 51.198 T 11-10-2018 IPR022987 Uncharacterised protein family UPF0227 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 Gene3D G3DSA:3.40.50.720 1 180 1.0E-56 T 11-10-2018 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 SMART SM01350 179 468 8.1E-224 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 179 467 1.2E-133 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 SUPERFAMILY SSF51735 4 172 5.03E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 357 379 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 66 95 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 249 276 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 4 27 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 168 196 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 119 144 1.5E-89 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 Gene3D G3DSA:1.20.5.320 436 468 7.9E-22 T 11-10-2018 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 Gene3D G3DSA:1.10.1040.10 181 435 1.0E-110 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 PIRSF PIRSF000109 1 468 1.1E-240 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 174 1.3E-51 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 5 468 1.3E-227 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 SUPERFAMILY SSF48179 177 467 5.1E-132 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_08710 3119b032b9aac923c0066c2ac22825ee 468 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 253 265 - T 11-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 BED32_07575 79f0fd2cafcc65f9278973e6dd8ad49d 467 Gene3D G3DSA:2.40.160.10 29 466 3.3E-32 T 11-10-2018 IPR023614 Porin domain superfamily BED32_07575 79f0fd2cafcc65f9278973e6dd8ad49d 467 Pfam PF03573 outer membrane porin, OprD family 33 436 4.8E-22 T 11-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 BED32_14270 ac90e2cd186b809b701b09004676fc91 134 Pfam PF13276 HTH-like domain 24 74 1.2E-6 T 11-10-2018 IPR025948 HTH-like domain BED32_05605 1d81fd654a824ed565f53362965279e5 229 Hamap MF_01681 Enolase-phosphatase E1 [mtnC]. 1 222 41.571 T 11-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 BED32_05605 1d81fd654a824ed565f53362965279e5 229 TIGRFAM TIGR01691 enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 2 221 1.5E-88 T 11-10-2018 IPR023943 Enolase-phosphatase E1 GO:0000287|GO:0019509|GO:0043874 KEGG: 00270+3.1.3.77|Reactome: R-HSA-1237112 BED32_05605 1d81fd654a824ed565f53362965279e5 229 SUPERFAMILY SSF56784 1 221 6.68E-57 T 11-10-2018 IPR036412 HAD-like superfamily BED32_05605 1d81fd654a824ed565f53362965279e5 229 Gene3D G3DSA:3.40.50.1000 5 206 8.8E-74 T 11-10-2018 IPR023214 HAD superfamily BED32_05605 1d81fd654a824ed565f53362965279e5 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 164 184 2.3E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_05605 1d81fd654a824ed565f53362965279e5 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 191 204 2.3E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_05605 1d81fd654a824ed565f53362965279e5 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.3E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_05605 1d81fd654a824ed565f53362965279e5 229 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 114 127 2.3E-6 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_05605 1d81fd654a824ed565f53362965279e5 229 Gene3D G3DSA:1.10.720.60 16 99 8.8E-74 T 11-10-2018 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Gene3D G3DSA:1.20.200.10 139 407 5.5E-119 T 11-10-2018 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00145 Argininosuccinate lyase family signature 175 195 1.1E-5 T 11-10-2018 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00145 Argininosuccinate lyase family signature 317 333 1.1E-5 T 11-10-2018 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 5 461 1.1E-241 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 1.9E-33 T 11-10-2018 IPR000362 Fumarate lyase family BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 1.9E-33 T 11-10-2018 IPR000362 Fumarate lyase family BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 1.9E-33 T 11-10-2018 IPR000362 Fumarate lyase family BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 1.9E-33 T 11-10-2018 IPR000362 Fumarate lyase family BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Gene3D G3DSA:1.10.40.30 408 464 1.4E-31 T 11-10-2018 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 462 91.314 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 SUPERFAMILY SSF48557 4 462 2.51E-157 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Pfam PF10415 Fumarase C C-terminus 408 461 2.3E-26 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Gene3D G3DSA:1.10.275.10 5 138 2.7E-56 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal BED32_11420 47ba82f1ffa14fa99e1a885f10e4dce9 464 Pfam PF00206 Lyase 12 342 1.9E-118 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal BED32_18635 442914e513d07c251e785623aa633746 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 1.1E-140 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 BED32_18635 442914e513d07c251e785623aa633746 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 354 2.7E-74 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 BED32_05885 d92ee31bea2911b19023652e60f71953 226 Gene3D G3DSA:3.40.50.720 1 226 1.7E-51 T 11-10-2018 BED32_05885 d92ee31bea2911b19023652e60f71953 226 SUPERFAMILY SSF51735 7 226 3.26E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_05885 d92ee31bea2911b19023652e60f71953 226 Pfam PF00106 short chain dehydrogenase 8 187 1.8E-25 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_05885 d92ee31bea2911b19023652e60f71953 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 1.7E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_05885 d92ee31bea2911b19023652e60f71953 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 1.7E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_05885 d92ee31bea2911b19023652e60f71953 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.7E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_05885 d92ee31bea2911b19023652e60f71953 226 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 71 82 1.7E-13 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_18460 8f8433215ad329a42827700ecdcee620 639 Gene3D G3DSA:1.10.10.60 583 626 2.3E-10 T 11-10-2018 BED32_18460 8f8433215ad329a42827700ecdcee620 639 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 347 360 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 BED32_18460 8f8433215ad329a42827700ecdcee620 639 Gene3D G3DSA:3.40.50.300 313 490 5.2E-46 T 11-10-2018 BED32_18460 8f8433215ad329a42827700ecdcee620 639 SMART SM00091 199 267 0.0024 T 11-10-2018 IPR000014 PAS domain BED32_18460 8f8433215ad329a42827700ecdcee620 639 Pfam PF02954 Bacterial regulatory protein, Fis family 584 622 4.3E-9 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_18460 8f8433215ad329a42827700ecdcee620 639 SUPERFAMILY SSF46689 532 626 7.53E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18460 8f8433215ad329a42827700ecdcee620 639 Gene3D G3DSA:3.30.450.20 209 312 4.0E-21 T 11-10-2018 BED32_18460 8f8433215ad329a42827700ecdcee620 639 Gene3D G3DSA:3.30.450.40 1 186 7.7E-52 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_18460 8f8433215ad329a42827700ecdcee620 639 Gene3D G3DSA:1.10.8.60 491 568 2.0E-17 T 11-10-2018 BED32_18460 8f8433215ad329a42827700ecdcee620 639 Pfam PF00158 Sigma-54 interaction domain 327 486 1.4E-38 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_18460 8f8433215ad329a42827700ecdcee620 639 Pfam PF00989 PAS fold 200 300 4.6E-10 T 11-10-2018 IPR013767 PAS fold GO:0006355 BED32_18460 8f8433215ad329a42827700ecdcee620 639 SUPERFAMILY SSF52540 328 563 7.06E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18460 8f8433215ad329a42827700ecdcee620 639 SUPERFAMILY SSF55785 195 298 6.81E-9 T 11-10-2018 IPR035965 PAS domain superfamily BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 422 8.0E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 8.0E-8 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 Gene3D G3DSA:3.30.450.140 42 193 1.5E-66 T 11-10-2018 IPR038429 PhoQ Sensor superfamily BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 SUPERFAMILY SSF55874 335 475 1.96E-30 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 Pfam PF08918 PhoQ Sensor 8 185 3.5E-89 T 11-10-2018 IPR015014 PhoQ Sensor GO:0000160|GO:0004673|GO:0005524|GO:0016020|GO:0018106|GO:0046872 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 SUPERFAMILY SSF47384 247 322 3.34E-5 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 SMART SM00387 373 479 1.1E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 SMART SM00388 264 328 0.0049 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 Gene3D G3DSA:1.10.287.130 214 321 2.6E-8 T 11-10-2018 BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 Gene3D G3DSA:3.30.565.10 334 483 4.3E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_13015 f66eaa8350bb1eae89d5c0ba2979bee8 485 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 375 475 3.9E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_03320 e270d57f8fd134ddb48ffe1f9a7db9de 289 Pfam PF00892 EamA-like transporter family 2 121 1.6E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_03320 e270d57f8fd134ddb48ffe1f9a7db9de 289 Pfam PF00892 EamA-like transporter family 131 268 2.8E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_03320 e270d57f8fd134ddb48ffe1f9a7db9de 289 SUPERFAMILY SSF103481 32 122 7.45E-10 T 11-10-2018 BED32_03320 e270d57f8fd134ddb48ffe1f9a7db9de 289 SUPERFAMILY SSF103481 192 271 1.14E-7 T 11-10-2018 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 1 326 1.0E-149 T 11-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 Gene3D G3DSA:3.40.50.2300 153 332 8.2E-29 T 11-10-2018 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 1 48 2.5E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 Gene3D G3DSA:3.40.50.2300 60 152 4.6E-25 T 11-10-2018 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 SUPERFAMILY SSF47413 2 56 1.03E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 60 302 1.9E-15 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 SMART SM00354 1 71 4.9E-30 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 Gene3D G3DSA:1.10.260.40 1 59 8.7E-28 T 11-10-2018 BED32_17935 33f5f51926af9c47fdf4ec2e54226665 332 SUPERFAMILY SSF53822 58 312 3.73E-40 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 PIRSF PIRSF006485 1 470 1.4E-177 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 3.8E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 3.8E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Hamap MF_00195 GTPase Der [der]. 2 465 38.664 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Gene3D G3DSA:3.40.50.300 2 160 1.6E-42 T 11-10-2018 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 SMART SM00382 205 352 0.35 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 SMART SM00382 1 174 3.4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 SUPERFAMILY SSF52540 204 468 3.81E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 382 462 2.6E-25 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Gene3D G3DSA:3.40.50.300 205 378 1.9E-47 T 11-10-2018 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Pfam PF01926 50S ribosome-binding GTPase 5 119 6.4E-27 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Pfam PF01926 50S ribosome-binding GTPase 209 326 7.4E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 207 370 3.9E-21 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 153 2.2E-20 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 Gene3D G3DSA:3.30.300.20 382 464 1.5E-19 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 462 3.1E-177 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 BED32_15960 bcc266925e4ea9bd2d8f26f6d407fa44 494 SUPERFAMILY SSF52540 4 175 4.15E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 86 3.2E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 Pfam PF03466 LysR substrate binding domain 118 312 2.0E-19 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 SUPERFAMILY SSF53850 108 313 2.35E-41 T 11-10-2018 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 63 74 4.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 63 4.9E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 Gene3D G3DSA:1.10.10.10 18 105 2.1E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 SUPERFAMILY SSF46785 22 101 9.07E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 Gene3D G3DSA:3.40.190.10 189 286 8.0E-37 T 11-10-2018 BED32_17955 2e2ed2bfaec4aafa410f2c225f953355 318 Gene3D G3DSA:3.40.190.10 108 310 8.0E-37 T 11-10-2018 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 Pfam PF00281 Ribosomal protein L5 24 80 1.4E-28 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 SUPERFAMILY SSF55282 4 179 3.53E-79 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 PIRSF PIRSF002161 1 179 3.9E-67 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.774 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 Gene3D G3DSA:3.30.1440.10 1 179 8.4E-82 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01935 7f441aa56bd262bd2d84ebb291a6b5d8 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.6E-41 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 4 169 25.554 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 PIRSF PIRSF005784 3 190 7.4E-86 T 11-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Pfam PF14697 4Fe-4S dicluster domain 110 164 2.0E-17 T 11-10-2018 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 2 187 1.0E-84 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Gene3D G3DSA:3.30.70.20 101 139 3.2E-7 T 11-10-2018 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Pfam PF04060 Putative Fe-S cluster 44 76 5.7E-14 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Gene3D G3DSA:3.20.20.20 37 100 2.3E-12 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 SUPERFAMILY SSF54862 38 176 7.91E-30 T 11-10-2018 BED32_11540 2e01899783807cb25a1d1152431eb4b0 207 Gene3D G3DSA:3.30.70.20 140 183 6.9E-7 T 11-10-2018 BED32_08220 1545ffe7fd33ad609a7875b7b4b946dc 296 Pfam PF00892 EamA-like transporter family 153 287 2.2E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_08220 1545ffe7fd33ad609a7875b7b4b946dc 296 Pfam PF00892 EamA-like transporter family 16 144 1.0E-20 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_08220 1545ffe7fd33ad609a7875b7b4b946dc 296 SUPERFAMILY SSF103481 187 290 1.19E-11 T 11-10-2018 BED32_08220 1545ffe7fd33ad609a7875b7b4b946dc 296 SUPERFAMILY SSF103481 45 147 2.09E-11 T 11-10-2018 BED32_14265 3f17ce7fa316af8218644947af2286c5 103 SUPERFAMILY SSF46689 5 96 1.22E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_14265 3f17ce7fa316af8218644947af2286c5 103 Pfam PF01527 Transposase 4 77 7.1E-13 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_14265 3f17ce7fa316af8218644947af2286c5 103 Gene3D G3DSA:1.10.10.60 10 91 3.3E-8 T 11-10-2018 BED32_03880 e979f48f7f80a8f692f68c1424a31ba2 119 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 18 38 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BED32_03880 e979f48f7f80a8f692f68c1424a31ba2 119 Pfam PF00460 Flagella basal body rod protein 17 42 2.4E-5 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03880 e979f48f7f80a8f692f68c1424a31ba2 119 PIRSF PIRSF002889 58 119 8.0E-17 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BED32_03880 e979f48f7f80a8f692f68c1424a31ba2 119 PIRSF PIRSF002889 4 64 1.5E-16 T 11-10-2018 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 BED32_07800 5c5ba5679a09ae00b57a50b25c8ace67 99 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 19 96 8.4E-30 T 11-10-2018 IPR011846 Cyd operon protein YbgE BED32_07800 5c5ba5679a09ae00b57a50b25c8ace67 99 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 8 99 7.8E-40 T 11-10-2018 IPR011846 Cyd operon protein YbgE BED32_04655 9147f6872b959ab13eadb79c2fd34ac8 555 Pfam PF04932 O-Antigen ligase 212 352 5.6E-14 T 11-10-2018 IPR007016 O-antigen ligase-related BED32_04655 9147f6872b959ab13eadb79c2fd34ac8 555 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 373 553 1.9E-13 T 11-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal BED32_04655 9147f6872b959ab13eadb79c2fd34ac8 555 Pfam PF15864 Protein glycosylation ligase 172 197 5.5E-10 T 11-10-2018 IPR031726 Protein glycosylation ligase domain BED32_04025 da2fe530e1c97dd09849ca5b7f9b0186 172 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 12 162 2.7E-43 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE BED32_04025 da2fe530e1c97dd09849ca5b7f9b0186 172 Gene3D G3DSA:3.30.1460.40 1 143 2.5E-43 T 11-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily BED32_04025 da2fe530e1c97dd09849ca5b7f9b0186 172 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 16 161 1.8E-51 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE BED32_04025 da2fe530e1c97dd09849ca5b7f9b0186 172 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 16 161 6.0E-38 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.7E-22 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 SUPERFAMILY SSF57840 1 38 5.49E-17 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.971 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 11-10-2018 BED32_01980 4d06cdcbdaa96a508fb6a347610bdc61 38 Pfam PF00444 Ribosomal protein L36 1 38 1.7E-20 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 Pfam PF08013 Tagatose 6 phosphate kinase 31 450 4.7E-200 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 SUPERFAMILY SSF51569 32 450 2.75E-166 T 11-10-2018 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 33 450 4.7E-205 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 Gene3D G3DSA:1.10.400.20 314 437 1.1E-174 T 11-10-2018 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 Gene3D G3DSA:3.20.20.70 36 443 1.1E-174 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_10090 65b6a1aacd1da1ea49e5a57caf82196d 471 PIRSF PIRSF009264 26 454 6.1E-198 T 11-10-2018 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 BED32_12765 93ee65ec9a5820e4e6e38da9d7bc8119 204 Pfam PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP 57 201 5.1E-69 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP BED32_12765 93ee65ec9a5820e4e6e38da9d7bc8119 204 SUPERFAMILY SSF56925 46 204 5.26E-78 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_12765 93ee65ec9a5820e4e6e38da9d7bc8119 204 Hamap MF_00837 Lipid A palmitoyltransferase PagP [pagP]. 3 204 41.673 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP BED32_12765 93ee65ec9a5820e4e6e38da9d7bc8119 204 Gene3D G3DSA:2.40.160.20 44 204 1.5E-71 T 11-10-2018 BED32_12765 93ee65ec9a5820e4e6e38da9d7bc8119 204 ProDom PD103779 CRCA ANTIMICROBIAL RESISTANCE LIPOPROTEIN RCP A PEPTIDE ACYLATION LIPID EXPORTED 56 192 1.0E-62 T 11-10-2018 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP BED32_12815 719a21185b032964115ad15ae248235e 139 SUPERFAMILY SSF55729 31 137 7.77E-23 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_12815 719a21185b032964115ad15ae248235e 139 Gene3D G3DSA:3.40.630.30 35 137 2.5E-24 T 11-10-2018 BED32_12815 719a21185b032964115ad15ae248235e 139 Pfam PF00583 Acetyltransferase (GNAT) family 38 115 6.8E-11 T 11-10-2018 IPR000182 GNAT domain BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82693 559 634 7.85E-6 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Pfam PF00873 AcrB/AcrD/AcrF family 8 1012 3.1E-158 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82693 136 326 9.24E-23 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82714 184 268 5.1E-12 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.70.1430 40 807 2.1E-247 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.2090.10 179 271 2.1E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:1.20.1640.10 508 1010 2.1E-247 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82693 40 135 2.22E-19 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.2090.10 709 799 2.1E-247 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.70.1320 136 328 2.1E-247 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.70.1430 559 657 2.1E-247 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:1.20.1640.10 13 507 2.1E-247 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82866 795 1014 2.49E-45 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82714 722 792 1.31E-8 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.0E-19 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.0E-19 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.0E-19 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 2.0E-19 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.0E-19 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 SUPERFAMILY SSF82866 294 489 7.72E-37 T 11-10-2018 BED32_18525 f251e20aeaa07b43d720355680f5a4e9 1028 Gene3D G3DSA:3.30.70.1440 658 859 2.1E-247 T 11-10-2018 BED32_12655 f59502252b0062c14139284958a9a721 106 Pfam PF07130 YebG protein 1 74 2.4E-35 T 11-10-2018 IPR009813 Uncharacterised protein family YebG BED32_12655 f59502252b0062c14139284958a9a721 106 Gene3D G3DSA:1.10.10.710 21 90 1.7E-13 T 11-10-2018 IPR038627 YebG-like superfamily BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Pfam PF04073 Aminoacyl-tRNA editing domain 257 377 3.1E-26 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 PIRSF PIRSF001535 1 572 4.7E-276 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 42.978 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 4.2E-49 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 SUPERFAMILY SSF55826 218 390 9.29E-33 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Gene3D G3DSA:3.30.930.10 11 465 4.4E-243 T 11-10-2018 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Gene3D G3DSA:3.90.960.10 240 389 4.4E-243 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 1.1E-271 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.9E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.9E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.9E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.9E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 SUPERFAMILY SSF52954 463 571 6.64E-33 T 11-10-2018 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Pfam PF03129 Anticodon binding domain 475 568 5.4E-21 T 11-10-2018 IPR004154 Anticodon-binding BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 SUPERFAMILY SSF55681 10 478 1.58E-107 T 11-10-2018 BED32_16760 dc74e920c81c2f994a2ed9454f1affa4 572 Gene3D G3DSA:3.40.50.800 4 554 4.4E-243 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 Pfam PF03737 Aldolase/RraA 5 152 9.0E-36 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 Gene3D G3DSA:3.50.30.40 1 161 1.1E-61 T 11-10-2018 BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 47.193 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 2.7E-62 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 161 5.2E-87 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 BED32_00545 fdea92dfee4f44fbfefb9f40266cb0d3 161 SUPERFAMILY SSF89562 2 158 2.75E-44 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily BED32_19545 dbc7790f7369fb13279a00216af1b412 216 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 Pfam PF00813 FliP family 13 211 3.7E-65 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 10 211 5.4E-85 T 11-10-2018 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 50 69 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 11 30 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 30 50 2.3E-69 T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19545 dbc7790f7369fb13279a00216af1b412 216 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 11-10-2018 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 BED32_19180 55416192609acf01fd0a3035ac61adf9 246 Gene3D G3DSA:3.30.1330.30 1 75 1.3E-28 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like BED32_19180 55416192609acf01fd0a3035ac61adf9 246 SMART SM00967 4 80 6.4E-22 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BED32_19180 55416192609acf01fd0a3035ac61adf9 246 Pfam PF00588 SpoU rRNA Methylase family 96 236 1.3E-39 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BED32_19180 55416192609acf01fd0a3035ac61adf9 246 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 4 76 8.2E-20 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 BED32_19180 55416192609acf01fd0a3035ac61adf9 246 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 242 5.7E-90 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 BED32_19180 55416192609acf01fd0a3035ac61adf9 246 Gene3D G3DSA:3.40.1280.10 77 243 4.1E-66 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_19180 55416192609acf01fd0a3035ac61adf9 246 SUPERFAMILY SSF75217 69 243 4.97E-49 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_19180 55416192609acf01fd0a3035ac61adf9 246 SUPERFAMILY SSF55315 2 75 6.0E-20 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like BED32_19180 55416192609acf01fd0a3035ac61adf9 246 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 243 44.178 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Pfam PF00874 PRD domain 295 381 5.2E-21 T 11-10-2018 IPR011608 PRD domain GO:0006355 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 SUPERFAMILY SSF52794 396 473 1.26E-8 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Gene3D G3DSA:1.10.1790.10 288 384 7.7E-19 T 11-10-2018 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 494 621 3.2E-18 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Pfam PF05043 Mga helix-turn-helix domain 74 155 3.6E-13 T 11-10-2018 IPR007737 Mga helix-turn-helix domain BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 SUPERFAMILY SSF63520 287 386 2.62E-23 T 11-10-2018 IPR036634 PRD domain superfamily GO:0006355 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 SUPERFAMILY SSF55804 485 624 3.31E-25 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Gene3D G3DSA:3.40.50.2300 395 481 3.5E-5 T 11-10-2018 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Gene3D G3DSA:1.10.10.10 5 143 2.0E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Gene3D G3DSA:3.40.930.10 489 625 3.9E-18 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_02835 c9cae3dc76c24d9117768354d94ecff4 632 Pfam PF08279 HTH domain 7 53 5.1E-7 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 Pfam PF01380 SIS domain 132 260 1.4E-18 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 SUPERFAMILY SSF46689 1 78 3.76E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 Gene3D G3DSA:3.40.50.10490 100 279 2.7E-36 T 11-10-2018 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 76 3.5E-21 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 SUPERFAMILY SSF53697 111 274 8.49E-34 T 11-10-2018 BED32_03370 e1fb4d6c3d31b31522ef452c2aa69d2c 286 Gene3D G3DSA:1.10.10.10 1 76 3.4E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21005 75da0516a87411b026d85f7130b5fd46 410 Gene3D G3DSA:3.40.50.10300 193 410 1.1E-87 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 Gene3D G3DSA:3.40.50.1950 6 192 3.6E-54 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 SUPERFAMILY SSF52507 9 186 1.7E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 Pfam PF02441 Flavoprotein 13 185 4.8E-43 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 SUPERFAMILY SSF102645 191 406 2.35E-80 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 194 375 4.5E-75 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 BED32_21005 75da0516a87411b026d85f7130b5fd46 410 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 11 401 1.1E-162 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 8 490 3.5E-217 T 11-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 Gene3D G3DSA:3.40.1080.20 334 473 1.7E-36 T 11-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 Gene3D G3DSA:3.40.1080.10 4 171 1.4E-13 T 11-10-2018 BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 2 213 1.2E-58 T 11-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 SUPERFAMILY SSF100950 8 219 6.47E-57 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 317 461 6.8E-42 T 11-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain BED32_10555 21d4aed79ff523cfbc7d7289a152fa99 493 SUPERFAMILY SSF100950 227 490 6.61E-68 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 Gene3D G3DSA:2.40.50.100 75 218 3.7E-68 T 11-10-2018 BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 Gene3D G3DSA:2.40.30.170 69 301 3.7E-68 T 11-10-2018 BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 307 1.1E-11 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 SUPERFAMILY SSF111369 66 314 1.57E-57 T 11-10-2018 BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 51 391 1.0E-75 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 Gene3D G3DSA:1.10.287.470 110 183 3.7E-68 T 11-10-2018 BED32_04085 58d4d04dfecbdc1be33afdd145960e93 400 Gene3D G3DSA:2.40.420.20 302 392 5.2E-22 T 11-10-2018 BED32_08530 157194980895397d90aa7b81ce3cebce 92 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site BED32_08530 157194980895397d90aa7b81ce3cebce 92 SUPERFAMILY SSF159127 1 87 1.23E-28 T 11-10-2018 IPR037254 HupF/HypC superfamily BED32_08530 157194980895397d90aa7b81ce3cebce 92 Pfam PF01455 HupF/HypC family 1 74 4.8E-27 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 4.3E-22 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 4.3E-22 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 47 63 4.3E-22 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 65 77 4.3E-22 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 84 1.6E-26 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC BED32_08530 157194980895397d90aa7b81ce3cebce 92 Gene3D G3DSA:2.40.50.970 1 83 1.9E-26 T 11-10-2018 IPR037254 HupF/HypC superfamily BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 SUPERFAMILY SSF53955 155 357 6.48E-37 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 Pfam PF01464 Transglycosylase SLT domain 195 317 5.3E-33 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 Pfam PF11873 Domain of unknown function (DUF3393) 3 190 1.5E-77 T 11-10-2018 IPR024570 Murein transglycosylase-C, N-terminal BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 Gene3D G3DSA:1.10.530.10 178 354 2.0E-49 T 11-10-2018 BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 1 357 60.589 T 11-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 BED32_04290 cd5b12387abd064cbdbd1d027265a1f5 358 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 212 240 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BED32_06805 7e16b83a688dae1994fffded4d0ba3bf 198 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 196 6.6E-42 T 11-10-2018 IPR018755 Bacteriophage Mu-like, Gp48 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 SUPERFAMILY SSF52210 123 288 1.11E-56 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 Pfam PF00549 CoA-ligase 151 271 4.0E-21 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.093 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 Pfam PF02629 CoA binding domain 6 99 1.0E-32 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 Gene3D G3DSA:3.40.50.720 2 123 8.0E-52 T 11-10-2018 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 287 4.3E-146 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.1E-40 T 11-10-2018 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.1E-40 T 11-10-2018 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.1E-40 T 11-10-2018 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.1E-40 T 11-10-2018 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 SMART SM00881 4 100 6.1E-39 T 11-10-2018 IPR003781 CoA-binding GO:0048037 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 PIRSF PIRSF001553 1 291 1.3E-134 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 SUPERFAMILY SSF51735 1 122 4.22E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_07775 44df0319653f350e29eeb33a2a6d135f 292 Gene3D G3DSA:3.40.50.261 124 289 4.9E-76 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Gene3D G3DSA:1.20.58.850 581 852 1.2E-138 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 PIRSF PIRSF005246 1 1478 0.0 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Gene3D G3DSA:3.40.1140.10 1383 1468 2.8E-38 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 SUPERFAMILY SSF52540 22 224 8.77E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Pfam PF16330 MukB hinge domain 645 810 2.5E-73 T 11-10-2018 IPR032520 MukB, hinge domain BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Gene3D G3DSA:1.20.1060.30 667 778 1.2E-138 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Gene3D G3DSA:3.40.1140.10 1 227 2.7E-102 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1471 11.068 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1336 1424 4.5E-15 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 SUPERFAMILY SSF52540 21 1433 4.36E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Gene3D G3DSA:1.20.58.850 620 830 1.2E-138 T 11-10-2018 BED32_13585 64ac422a005c2f1314e116927e79867a 1481 Pfam PF04310 MukB N-terminal 2 227 3.9E-124 T 11-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 BED32_03340 4c259d76c1b95deeb433d62f96fa9ccb 518 Gene3D G3DSA:1.20.1740.10 18 482 1.1E-32 T 11-10-2018 BED32_03340 4c259d76c1b95deeb433d62f96fa9ccb 518 Pfam PF13520 Amino acid permease 23 456 4.2E-60 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_03340 4c259d76c1b95deeb433d62f96fa9ccb 518 PIRSF PIRSF006060 3 493 6.9E-54 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_03340 4c259d76c1b95deeb433d62f96fa9ccb 518 TIGRFAM TIGR03813 put_Glu_GABA_T: putative glutamate/gamma-aminobutyrate antiporter 16 489 2.0E-268 T 11-10-2018 IPR022520 Putative glutamate/gamma-aminobutyrate antiporter BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 429 8.2E-143 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 432 5.1E-242 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 Pfam PF13520 Amino acid permease 9 415 3.4E-48 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 Gene3D G3DSA:1.20.1740.10 1 436 1.8E-57 T 11-10-2018 BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 Hamap MF_02073 Putrescine transporter PotE [potE]. 8 435 36.521 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 BED32_18840 8ddfa8e3dfd345d7bec1ec545556c5a8 438 PIRSF PIRSF006060 1 436 6.0E-49 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 149 220 1.3E-5 T 11-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 13 240 4.2E-114 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 Gene3D G3DSA:2.60.40.420 113 283 1.2E-59 T 11-10-2018 IPR008972 Cupredoxin BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 Gene3D G3DSA:1.10.287.90 28 112 3.3E-32 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 Pfam PF06481 COX Aromatic Rich Motif 240 286 2.8E-21 T 11-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 PIRSF PIRSF000292 1 313 2.2E-132 T 11-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 SUPERFAMILY SSF81464 18 116 2.29E-23 T 11-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_06045 285800b18d1e41eccc2f0a9388e9bf30 318 SUPERFAMILY SSF49503 124 282 7.74E-53 T 11-10-2018 IPR008972 Cupredoxin BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 57 223 5.6E-38 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 SUPERFAMILY SSF51126 6 67 2.64E-6 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 Gene3D G3DSA:2.40.128.130 10 228 1.5E-45 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 Pfam PF03797 Autotransporter beta-domain 57 215 2.4E-28 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 SMART SM00869 2 226 2.7E-9 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_10045 26645f70dc957051012d3c4a8ed073a7 228 SUPERFAMILY SSF103515 53 222 1.27E-24 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 3 335 5.3E-130 T 11-10-2018 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 SUPERFAMILY SSF53774 3 335 2.22E-111 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 4.5E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 4.5E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 4.5E-17 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 SMART SM00870 5 323 6.1E-138 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 PIRSF PIRSF500176 2 332 1.7E-113 T 11-10-2018 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 PIRSF PIRSF001220 1 334 1.5E-98 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 Gene3D G3DSA:3.40.50.1170 1 208 5.7E-91 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 Gene3D G3DSA:3.40.50.40 209 338 5.4E-49 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 Pfam PF00710 Asparaginase, N-terminal 6 186 2.2E-63 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 BED32_12220 587750a32ccc67add2c21236ebf7c46b 338 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 Pfam PF00717 Peptidase S24-like 93 165 4.3E-20 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 151 163 2.7E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 272 291 2.7E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 87 103 2.7E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 Gene3D G3DSA:2.10.109.10 87 312 1.3E-74 T 11-10-2018 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 ProSitePatterns PS00501 Signal peptidases I serine active site. 96 103 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 72 166 8.8E-25 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 266 312 1.7E-17 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 Gene3D G3DSA:2.170.230.10 162 271 1.3E-74 T 11-10-2018 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 ProSitePatterns PS00760 Signal peptidases I lysine active site. 153 165 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 SUPERFAMILY SSF51306 85 331 2.82E-78 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 Pfam PF10502 Signal peptidase, peptidase S26 270 310 3.1E-7 T 11-10-2018 IPR019533 Peptidase S26 BED32_16250 98415be9877cf4508ad90c8ecce711b3 332 ProSitePatterns PS00761 Signal peptidases I signature 3. 277 290 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 BED32_16430 1589bf71b16eb29ca6cbfab065596fc1 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 126 18.347 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_16430 1589bf71b16eb29ca6cbfab065596fc1 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 121 3.4E-20 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 Pfam PF00072 Response regulator receiver domain 6 113 2.6E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 SUPERFAMILY SSF52172 2 125 1.32E-35 T 11-10-2018 IPR011006 CheY-like superfamily BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 SMART SM00862 156 232 2.1E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 Gene3D G3DSA:1.10.10.10 126 236 1.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 Gene3D G3DSA:3.40.50.2300 1 123 8.7E-33 T 11-10-2018 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 SUPERFAMILY SSF46894 137 234 2.72E-21 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 232 7.3E-18 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_18240 aff0b30d35a2841b3d2eb46d1396fa88 238 SMART SM00448 4 114 2.6E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 5 14 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 200 6.2E-52 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 SUPERFAMILY SSF53254 1 203 6.71E-54 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_09045 9875cba78201c45eda635b944cf85c4d 211 PIRSF PIRSF000709 2 189 5.5E-8 T 11-10-2018 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 SMART SM00855 2 162 6.6E-20 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 3 187 3.4E-49 T 11-10-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BED32_09045 9875cba78201c45eda635b944cf85c4d 211 Gene3D G3DSA:3.40.50.1240 1 209 2.7E-54 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 Pfam PF01791 DeoC/LacD family aldolase 52 258 4.0E-18 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 PIRSF PIRSF038992 31 289 2.1E-77 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 SMART SM01133 51 259 7.6E-27 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 Hamap MF_02052 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase [lsrF]. 1 291 75.206 T 11-10-2018 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase GO:0016747 BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 Gene3D G3DSA:3.20.20.70 1 291 2.7E-100 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_18585 8f88a723d079ae4cb5c46bde9fea1f1d 291 SUPERFAMILY SSF51569 35 274 8.79E-62 T 11-10-2018 BED32_17655 e3edda07174a5f887a000ea29e9a9e0f 159 SUPERFAMILY SSF55083 1 156 7.46E-54 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BED32_17655 e3edda07174a5f887a000ea29e9a9e0f 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BED32_17655 e3edda07174a5f887a000ea29e9a9e0f 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 8.1E-37 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BED32_17655 e3edda07174a5f887a000ea29e9a9e0f 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 9.1E-46 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BED32_17655 e3edda07174a5f887a000ea29e9a9e0f 159 Gene3D G3DSA:3.30.70.560 1 159 4.5E-60 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 Gene3D G3DSA:3.40.50.300 97 270 1.3E-47 T 11-10-2018 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 Pfam PF03193 RsgA GTPase 94 271 1.3E-54 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 Gene3D G3DSA:2.40.50.140 29 96 1.7E-26 T 11-10-2018 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 SUPERFAMILY SSF52540 108 335 3.46E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 34 335 37.405 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 67 329 9.3E-93 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 BED32_19270 0fc02fe3f4390d98c50f789beb00a1db 345 Gene3D G3DSA:1.10.40.50 271 344 3.2E-28 T 11-10-2018 BED32_15635 6f4286dc9572a8e44cdb5b13441d86bf 352 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 9 344 38.988 T 11-10-2018 IPR014524 Outer membrane protein assembly factor BamC BED32_15635 6f4286dc9572a8e44cdb5b13441d86bf 352 Gene3D G3DSA:3.30.310.170 227 351 1.9E-47 T 11-10-2018 BED32_15635 6f4286dc9572a8e44cdb5b13441d86bf 352 PIRSF PIRSF026343 9 346 8.1E-111 T 11-10-2018 IPR014524 Outer membrane protein assembly factor BamC BED32_15635 6f4286dc9572a8e44cdb5b13441d86bf 352 Pfam PF06804 NlpB/DapX lipoprotein 40 343 1.1E-111 T 11-10-2018 IPR010653 NlpB/DapX lipoprotein BED32_15635 6f4286dc9572a8e44cdb5b13441d86bf 352 Gene3D G3DSA:3.30.530.50 101 213 2.0E-45 T 11-10-2018 BED32_20095 2e1cab42b5e1cf2f86c382cce174dd76 281 SUPERFAMILY SSF161098 4 277 2.62E-58 T 11-10-2018 IPR035906 MetI-like superfamily BED32_20095 2e1cab42b5e1cf2f86c382cce174dd76 281 Gene3D G3DSA:1.10.3720.10 2 274 3.2E-53 T 11-10-2018 IPR035906 MetI-like superfamily BED32_20095 2e1cab42b5e1cf2f86c382cce174dd76 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 276 8.7E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_11030 9cead8ffb11150f2dce01e6b27ed2fc3 403 Gene3D G3DSA:1.20.1290.10 284 403 9.8E-23 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_11030 9cead8ffb11150f2dce01e6b27ed2fc3 403 SUPERFAMILY SSF69118 260 401 6.33E-25 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_11030 9cead8ffb11150f2dce01e6b27ed2fc3 403 Gene3D G3DSA:1.20.1290.10 91 207 2.4E-8 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_11030 9cead8ffb11150f2dce01e6b27ed2fc3 403 SUPERFAMILY SSF69118 72 207 1.46E-15 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 BED32_04170 b363a45d73695d78a8a81b6cd8ca208e 319 SUPERFAMILY SSF81345 5 313 9.29E-68 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_04170 b363a45d73695d78a8a81b6cd8ca208e 319 Pfam PF01032 FecCD transport family 13 313 2.1E-64 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_04170 b363a45d73695d78a8a81b6cd8ca208e 319 Gene3D G3DSA:1.10.3470.10 2 318 1.0E-64 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_14020 55c1d2146b44f5e53cbf611f3cfdd327 262 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_14020 55c1d2146b44f5e53cbf611f3cfdd327 262 SMART SM00382 30 215 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14020 55c1d2146b44f5e53cbf611f3cfdd327 262 Pfam PF00005 ABC transporter 28 165 1.3E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14020 55c1d2146b44f5e53cbf611f3cfdd327 262 SUPERFAMILY SSF52540 5 229 1.47E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14020 55c1d2146b44f5e53cbf611f3cfdd327 262 Gene3D G3DSA:3.40.50.300 5 254 2.2E-56 T 11-10-2018 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 Pfam PF01196 Ribosomal protein L17 20 116 1.4E-34 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 7.1E-51 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 SUPERFAMILY SSF64263 1 118 4.71E-51 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 27.022 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02005 f6910a6ed93f4c8642971b5d7ef5abd9 129 Gene3D G3DSA:3.90.1030.10 1 117 3.4E-48 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 SUPERFAMILY SSF46785 2 109 3.7E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 Gene3D G3DSA:3.40.190.290 89 289 4.6E-45 T 11-10-2018 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 Pfam PF03466 LysR substrate binding domain 86 289 3.6E-47 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 4.0E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-5 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 Gene3D G3DSA:1.10.10.10 1 84 1.8E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14035 06214198af3e7d54a514c41dcb15a0cc 290 SUPERFAMILY SSF53850 89 289 3.75E-47 T 11-10-2018 BED32_08420 dc69ea0ec6d795ff2941de4f74fb40d1 390 SUPERFAMILY SSF103473 6 377 2.09E-22 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_08420 dc69ea0ec6d795ff2941de4f74fb40d1 390 Gene3D G3DSA:1.20.1250.20 1 380 7.1E-14 T 11-10-2018 BED32_08420 dc69ea0ec6d795ff2941de4f74fb40d1 390 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 13 370 5.0E-89 T 11-10-2018 IPR010645 Uncharacterised MFS-type transporter YbfB BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 Pfam PF13377 Periplasmic binding protein-like domain 169 321 1.8E-30 T 11-10-2018 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.5E-19 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 SUPERFAMILY SSF47413 1 59 7.51E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 Gene3D G3DSA:1.10.260.40 1 54 5.6E-23 T 11-10-2018 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 1.3E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 1.3E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 Gene3D G3DSA:3.40.50.2300 55 303 6.0E-65 T 11-10-2018 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 SMART SM00354 1 71 3.0E-30 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 SUPERFAMILY SSF53822 61 324 6.48E-68 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_01685 1027edb9f17b471d970e28afa8477eb4 326 Gene3D G3DSA:3.40.50.2300 160 287 6.0E-65 T 11-10-2018 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 6.3E-62 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.1E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.1E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.1E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.1E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.1E-27 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 SUPERFAMILY SSF47928 3 104 3.27E-27 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 Gene3D G3DSA:1.10.520.20 2 106 2.3E-37 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 19.098 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 174 5.4E-51 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21450 76abdb253cd0352663399de171a9e9d1 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 11-10-2018 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_06220 65b83eda387525fb62fd7853c986e44e 427 Pfam PF10797 Protein of unknown function 8 423 1.8E-141 T 11-10-2018 IPR019733 Uncharacterised protein family YhfT BED32_17790 015991455556ccf0aa6079a768b13bf5 302 PIRSF PIRSF006250 17 302 7.7E-105 T 11-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 Gene3D G3DSA:3.20.20.70 139 291 1.8E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 SUPERFAMILY SSF54675 14 129 3.92E-31 T 11-10-2018 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 SUPERFAMILY SSF51690 130 301 2.55E-57 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 300 5.3E-60 T 11-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 Gene3D G3DSA:3.90.1170.20 21 300 1.8E-116 T 11-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 43 128 2.8E-25 T 11-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 BED32_17790 015991455556ccf0aa6079a768b13bf5 302 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 27 301 5.2E-98 T 11-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 BED32_09510 192f9f03fcdd62183d9e06ff2947583b 116 ProDom PD015582 ACTIVATOR TRANSCRIPTIONAL TRANSCRIPTION FLAGELLUM FLHD FLAGELLAR DNA-BINDING REGULATION REGULATOR PROBABLE 9 94 2.0E-45 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 BED32_09510 192f9f03fcdd62183d9e06ff2947583b 116 SUPERFAMILY SSF63592 1 98 4.84E-39 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily BED32_09510 192f9f03fcdd62183d9e06ff2947583b 116 Gene3D G3DSA:1.10.4000.10 1 116 3.5E-48 T 11-10-2018 IPR036194 Flagellar transcriptional activator FlhD superfamily BED32_09510 192f9f03fcdd62183d9e06ff2947583b 116 Hamap MF_00725 Flagellar transcriptional regulator FlhD [flhD]. 1 104 28.706 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 BED32_09510 192f9f03fcdd62183d9e06ff2947583b 116 Pfam PF05247 Flagellar transcriptional activator (FlhD) 1 100 5.1E-40 T 11-10-2018 IPR023559 Flagellar transcriptional activator FlhD GO:0044780|GO:0045893 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 Gene3D G3DSA:3.20.70.20 7 764 0.0 T 11-10-2018 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 Pfam PF01228 Glycine radical 634 745 8.5E-39 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 SUPERFAMILY SSF51998 9 762 7.78E-275 T 11-10-2018 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 PIRSF PIRSF000379 12 764 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 ProSitePatterns PS00850 Glycine radical domain signature. 734 742 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 15 764 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 BED32_19395 235e3b29bfb1d5d2bad9c46549b6cbc4 764 Pfam PF02901 Pyruvate formate lyase-like 26 618 3.5E-191 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 BED32_18810 4626b8546301fb18fa95972aa93988c8 279 Gene3D G3DSA:1.10.3720.10 1 270 7.4E-61 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18810 4626b8546301fb18fa95972aa93988c8 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 272 2.1E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_18810 4626b8546301fb18fa95972aa93988c8 279 SUPERFAMILY SSF161098 3 279 7.48E-66 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 Gene3D G3DSA:1.10.287.470 96 187 1.2E-16 T 11-10-2018 BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 SUPERFAMILY SSF111369 54 264 2.09E-22 T 11-10-2018 BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 274 5.7E-37 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 Gene3D G3DSA:2.40.30.170 220 319 7.0E-32 T 11-10-2018 BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 269 1.4E-18 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_15375 9e4671982d52f6b5f8e733017bf90dc2 402 Gene3D G3DSA:2.40.420.20 320 399 1.8E-15 T 11-10-2018 BED32_17050 9f8648830552af0bedd07748f2989765 209 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 22 45 1.5E-6 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17050 9f8648830552af0bedd07748f2989765 209 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 23 43 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17050 9f8648830552af0bedd07748f2989765 209 Pfam PF07963 Prokaryotic N-terminal methylation motif 22 44 1.6E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17050 9f8648830552af0bedd07748f2989765 209 PIRSF PIRSF004525 14 209 7.7E-67 T 11-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 SMART SM00382 28 230 3.5E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 SMART SM00382 344 514 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Pfam PF00005 ABC transporter 336 469 2.4E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Pfam PF12848 ABC transporter 224 298 2.0E-9 T 11-10-2018 IPR032781 ABC-transporter extension domain BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Gene3D G3DSA:3.40.50.300 11 279 2.5E-66 T 11-10-2018 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 SUPERFAMILY SSF52540 4 244 6.55E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Gene3D G3DSA:3.40.50.300 283 550 5.5E-64 T 11-10-2018 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Pfam PF16326 ABC transporter C-terminal domain 564 632 4.9E-20 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 SUPERFAMILY SSF52540 310 501 1.0E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Gene3D G3DSA:1.10.287.380 555 637 1.4E-28 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13515 6a13af39ec93bd5557a084fd5c175cae 637 Pfam PF00005 ABC transporter 19 185 8.4E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_07705 5c12dda659ce9de81c6053560be48c68 210 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 1 194 1.9E-67 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BED32_07705 5c12dda659ce9de81c6053560be48c68 210 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 1 203 2.6E-92 T 11-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 BED32_07705 5c12dda659ce9de81c6053560be48c68 210 SUPERFAMILY SSF50891 80 205 6.83E-44 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_07705 5c12dda659ce9de81c6053560be48c68 210 SMART SM00796 1 194 1.5E-87 T 11-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D BED32_07705 5c12dda659ce9de81c6053560be48c68 210 Gene3D G3DSA:2.40.100.10 79 209 3.4E-54 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_07705 5c12dda659ce9de81c6053560be48c68 210 SUPERFAMILY SSF160467 1 84 1.31E-7 T 11-10-2018 BED32_04750 e00dec6b19ca0558a2b3195870a04085 82 Pfam PF00550 Phosphopantetheine attachment site 9 75 7.3E-9 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain BED32_04750 e00dec6b19ca0558a2b3195870a04085 82 SUPERFAMILY SSF47336 4 80 1.02E-12 T 11-10-2018 IPR036736 ACP-like superfamily BED32_04750 e00dec6b19ca0558a2b3195870a04085 82 Gene3D G3DSA:1.10.1200.10 1 82 2.2E-11 T 11-10-2018 IPR036736 ACP-like superfamily BED32_06760 2976ac63074ef1d73cb667b861e72bc5 496 PIRSF PIRSF007349 1 492 1.6E-165 T 11-10-2018 IPR007067 Tail sheath protein BED32_06760 2976ac63074ef1d73cb667b861e72bc5 496 Pfam PF04984 Phage tail sheath protein subtilisin-like domain 206 369 3.1E-21 T 11-10-2018 IPR035089 Tail sheath protein, subtilisin-like domain BED32_06760 2976ac63074ef1d73cb667b861e72bc5 496 Pfam PF17482 Phage tail sheath C-terminal domain 378 490 3.8E-9 T 11-10-2018 IPR020287 Tail sheath protein, C-terminal domain BED32_19985 b484b2e1d9ed750b944b941772070289 498 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 9 458 1.2E-186 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BED32_19985 b484b2e1d9ed750b944b941772070289 498 Gene3D G3DSA:1.20.5.570 458 497 1.4E-19 T 11-10-2018 BED32_19985 b484b2e1d9ed750b944b941772070289 498 Gene3D G3DSA:3.40.1670.10 340 457 3.9E-52 T 11-10-2018 BED32_19985 b484b2e1d9ed750b944b941772070289 498 SUPERFAMILY SSF143968 326 489 1.26E-68 T 11-10-2018 BED32_19985 b484b2e1d9ed750b944b941772070289 498 SUPERFAMILY SSF50475 6 325 1.33E-127 T 11-10-2018 BED32_19985 b484b2e1d9ed750b944b941772070289 498 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 4 490 73.764 T 11-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BED32_19985 b484b2e1d9ed750b944b941772070289 498 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 14 434 2.6E-173 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BED32_15650 8d508566ad122b03c0816a60c13a1b4d 156 PIRSF PIRSF000239 1 149 1.2E-17 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_15650 8d508566ad122b03c0816a60c13a1b4d 156 SUPERFAMILY SSF52833 3 153 4.88E-49 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_15650 8d508566ad122b03c0816a60c13a1b4d 156 Gene3D G3DSA:3.40.30.10 4 155 5.0E-47 T 11-10-2018 BED32_15650 8d508566ad122b03c0816a60c13a1b4d 156 Pfam PF00578 AhpC/TSA family 7 134 1.0E-38 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 SUPERFAMILY SSF56104 2 232 1.93E-75 T 11-10-2018 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 Pfam PF01259 SAICAR synthetase 7 231 4.2E-58 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 Gene3D G3DSA:3.30.200.20 7 231 6.3E-90 T 11-10-2018 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 28.801 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 234 2.2E-79 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 Gene3D G3DSA:3.30.470.20 85 220 6.3E-90 T 11-10-2018 BED32_15630 a3cadd5d7b074735e9dc8edc7f41646f 237 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_08880 0bccfb7291ab5bbd7df45a38a0b12737 91 Pfam PF03319 Ethanolamine utilisation protein EutN/carboxysome 1 87 4.6E-29 T 11-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml BED32_08880 0bccfb7291ab5bbd7df45a38a0b12737 91 ProDom PD012510 UTILIZATION ETHANOLAMINE CARBOXYSOME CCML PEPTIDE EUTN/CARBOXYSOME STRUCTURAL EUTN A B 11 87 5.0E-26 T 11-10-2018 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml BED32_08880 0bccfb7291ab5bbd7df45a38a0b12737 91 SUPERFAMILY SSF159133 1 90 4.19E-25 T 11-10-2018 IPR036677 EutN/Ccml superfamily BED32_08880 0bccfb7291ab5bbd7df45a38a0b12737 91 Gene3D G3DSA:2.40.50.220 1 91 3.5E-31 T 11-10-2018 IPR036677 EutN/Ccml superfamily BED32_09715 6bd84a7c09483b2a1158aa0856b90680 139 SMART SM00530 15 69 1.0E-4 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_09715 6bd84a7c09483b2a1158aa0856b90680 139 SUPERFAMILY SSF47413 11 71 3.66E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_09715 6bd84a7c09483b2a1158aa0856b90680 139 Gene3D G3DSA:1.10.260.40 12 76 3.8E-10 T 11-10-2018 BED32_09715 6bd84a7c09483b2a1158aa0856b90680 139 Pfam PF01381 Helix-turn-helix 24 69 7.7E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_12885 fd4427bd7df8fed63f90e15f68e57eb3 285 Pfam PF13460 NAD(P)H-binding 6 184 8.5E-23 T 11-10-2018 IPR016040 NAD(P)-binding domain BED32_12885 fd4427bd7df8fed63f90e15f68e57eb3 285 Gene3D G3DSA:3.40.50.720 3 267 2.7E-91 T 11-10-2018 BED32_12885 fd4427bd7df8fed63f90e15f68e57eb3 285 Gene3D G3DSA:3.90.25.10 137 269 2.7E-91 T 11-10-2018 BED32_12885 fd4427bd7df8fed63f90e15f68e57eb3 285 SUPERFAMILY SSF51735 2 255 5.14E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_13995 18d55c178c47a682b092729766df8a40 274 Pfam PF03180 NLPA lipoprotein 32 269 3.1E-76 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_13995 18d55c178c47a682b092729766df8a40 274 SUPERFAMILY SSF53850 32 270 2.04E-66 T 11-10-2018 BED32_13995 18d55c178c47a682b092729766df8a40 274 Gene3D G3DSA:3.40.190.10 111 219 2.1E-87 T 11-10-2018 BED32_13995 18d55c178c47a682b092729766df8a40 274 Gene3D G3DSA:3.40.190.10 32 267 2.1E-87 T 11-10-2018 BED32_13995 18d55c178c47a682b092729766df8a40 274 PIRSF PIRSF002854 1 271 4.1E-97 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 SUPERFAMILY SSF51735 4 243 1.64E-86 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.0E-66 T 11-10-2018 BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.3E-49 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 Gene3D G3DSA:3.40.50.720 1 244 4.7E-86 T 11-10-2018 BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 2.8E-100 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 3.2E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 3.2E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 3.2E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_13170 775b4fb54b146a58ab1c199df4053bc6 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.7E-5 T 11-10-2018 BED32_11080 f36a259497e1e1ebafacdfd5a83d1264 221 Pfam PF04012 PspA/IM30 family 2 216 7.6E-44 T 11-10-2018 IPR007157 PspA/IM30 BED32_11080 f36a259497e1e1ebafacdfd5a83d1264 221 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 218 8.6E-95 T 11-10-2018 IPR014319 Phage shock protein, PspA BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 99 122 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 417 7.1E-159 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 30.707 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 SUPERFAMILY SSF69742 1 158 2.62E-47 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Gene3D G3DSA:3.40.50.720 161 313 1.1E-44 T 11-10-2018 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 172 306 3.1E-49 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 SUPERFAMILY SSF69075 317 418 3.66E-28 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Gene3D G3DSA:3.30.460.30 1 158 7.4E-59 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 SUPERFAMILY SSF51735 162 315 7.1E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 156 1.1E-49 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 416 3.4E-24 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_09810 c501ad6d8ae7d11b6727fdcd5ad3dabf 420 PIRSF PIRSF000445 1 420 3.5E-156 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 BED32_20930 cd561a3aa30423acc8cedf053dc8adef 334 Pfam PF04748 Divergent polysaccharide deacetylase 28 238 1.1E-78 T 11-10-2018 IPR006837 Divergent polysaccharide deacetylase BED32_20930 cd561a3aa30423acc8cedf053dc8adef 334 Gene3D G3DSA:3.20.20.370 23 239 2.1E-76 T 11-10-2018 BED32_20930 cd561a3aa30423acc8cedf053dc8adef 334 SUPERFAMILY SSF88713 24 238 1.0E-73 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BED32_08870 faca9d3778764d5eba406b027bf317c6 462 Gene3D G3DSA:3.40.605.10 33 237 1.9E-108 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_08870 faca9d3778764d5eba406b027bf317c6 462 Gene3D G3DSA:3.40.309.10 238 417 1.9E-108 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_08870 faca9d3778764d5eba406b027bf317c6 462 Pfam PF00171 Aldehyde dehydrogenase family 28 416 8.4E-31 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_08870 faca9d3778764d5eba406b027bf317c6 462 PIRSF PIRSF036410 1 462 1.8E-207 T 11-10-2018 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related BED32_08870 faca9d3778764d5eba406b027bf317c6 462 SUPERFAMILY SSF53720 17 453 2.75E-60 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 Gene3D G3DSA:2.30.30.30 2 104 3.8E-40 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 8.0E-40 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 20.052 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 SUPERFAMILY SSF50104 4 100 9.03E-33 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 SMART SM00739 4 31 0.0014 T 11-10-2018 IPR005824 KOW BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 Pfam PF00467 KOW motif 8 32 7.7E-5 T 11-10-2018 IPR005824 KOW BED32_01930 9e3fed48ee66402aee55fea0a390cc77 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 4.2E-23 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16465 98f74a4bff82a69b86cf10523f711b8a 186 Gene3D G3DSA:3.40.50.300 1 177 9.2E-37 T 11-10-2018 BED32_16465 98f74a4bff82a69b86cf10523f711b8a 186 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 5 151 9.4E-24 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BED32_16465 98f74a4bff82a69b86cf10523f711b8a 186 PIRSF PIRSF005624 1 183 2.1E-38 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 BED32_16465 98f74a4bff82a69b86cf10523f711b8a 186 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 10 175 1.1E-70 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 BED32_16465 98f74a4bff82a69b86cf10523f711b8a 186 SUPERFAMILY SSF52540 1 172 1.49E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 151 168 - T 11-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 3 176 3.6E-72 T 11-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 PIRSF PIRSF000808 1 360 8.4E-122 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 183 365 3.2E-62 T 11-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 SUPERFAMILY SSF54197 179 364 8.68E-52 T 11-10-2018 IPR036265 HIT-like superfamily BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 Gene3D G3DSA:3.30.428.10 176 367 1.8E-68 T 11-10-2018 IPR036265 HIT-like superfamily BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 Gene3D G3DSA:3.30.428.10 44 175 8.6E-59 T 11-10-2018 IPR036265 HIT-like superfamily BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 SUPERFAMILY SSF54197 4 177 1.09E-73 T 11-10-2018 IPR036265 HIT-like superfamily BED32_07915 c5c5d8c61c622c51c3e488c24e804453 368 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 1 366 7.1E-196 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 SUPERFAMILY SSF53244 334 486 8.39E-51 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 16 486 6.3E-166 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Pfam PF01225 Mur ligase family, catalytic domain 20 97 4.4E-13 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 SUPERFAMILY SSF63418 1 98 7.98E-24 T 11-10-2018 IPR035911 MurE/MurF, N-terminal BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 419 2.8E-25 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 486 34.23 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Gene3D G3DSA:3.40.1390.10 1 99 1.1E-32 T 11-10-2018 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Gene3D G3DSA:3.40.1190.10 100 336 1.6E-88 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Pfam PF08245 Mur ligase middle domain 109 313 2.2E-51 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 SUPERFAMILY SSF53623 100 333 4.71E-77 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17905 aa8dc76b6aeeca03e9e90d851e5aa91e 490 Gene3D G3DSA:3.90.190.20 337 489 8.8E-56 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 SUPERFAMILY SSF50129 1 96 5.75E-31 T 11-10-2018 IPR011032 GroES-like superfamily BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 PRINTS PR00297 10kDa chaperonin signature 25 46 2.1E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 PRINTS PR00297 10kDa chaperonin signature 3 18 2.1E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 PRINTS PR00297 10kDa chaperonin signature 60 72 2.1E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 PRINTS PR00297 10kDa chaperonin signature 82 95 2.1E-27 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 23.826 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 Gene3D G3DSA:2.30.33.40 1 97 1.1E-36 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 SMART SM00883 2 95 5.0E-48 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_19350 3aca239d2e1e65e815365b21ebe58510 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 5.6E-29 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 1.0E-40 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 4.5E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 4.5E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 4.5E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 4.5E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 4.5E-22 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 Gene3D G3DSA:1.10.287.990 20 82 3.8E-26 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 SUPERFAMILY SSF46609 1 84 2.88E-35 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 PIRSF PIRSF000349 1 192 1.3E-86 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 Gene3D G3DSA:2.40.500.20 83 192 1.8E-44 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 82 1.8E-34 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_10890 72d2f29d90d017febfb67a4bb9eb4e9a 192 SUPERFAMILY SSF54719 82 191 2.36E-44 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 222 231 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 SMART SM00382 28 180 1.8E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 Pfam PF00158 Sigma-54 interaction domain 9 170 8.0E-60 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 Gene3D G3DSA:3.40.50.300 2 179 1.4E-56 T 11-10-2018 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 SUPERFAMILY SSF52540 8 243 1.5E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 312 332 1.3E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 295 312 1.3E-6 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 8 329 3.3E-165 T 11-10-2018 IPR014317 Transcription activator PspF BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 Pfam PF02954 Bacterial regulatory protein, Fis family 292 327 4.4E-7 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 94 109 - T 11-10-2018 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 Gene3D G3DSA:1.10.10.60 261 332 2.1E-8 T 11-10-2018 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 Gene3D G3DSA:1.10.8.60 180 260 1.2E-28 T 11-10-2018 BED32_11075 9a2c1588ed2efaa23c6c49e77a8978f9 336 SUPERFAMILY SSF46689 222 331 7.17E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 Gene3D G3DSA:3.40.50.1470 1 186 2.4E-67 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 Pfam PF01195 Peptidyl-tRNA hydrolase 1 180 1.8E-49 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 SUPERFAMILY SSF53178 1 184 2.49E-65 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 8 21 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 1 182 1.4E-64 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 102 112 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 BED32_09780 e56a25e67fa332295b05e5e22f20c92a 188 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 174 31.183 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 SUPERFAMILY SSF90123 12 323 3.01E-69 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 SMART SM00382 366 557 1.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 Gene3D G3DSA:3.40.50.300 333 584 1.8E-80 T 11-10-2018 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 SUPERFAMILY SSF52540 336 576 3.02E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 ProSitePatterns PS00211 ABC transporters family signature. 477 491 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 Pfam PF00664 ABC transporter transmembrane region 26 295 9.3E-42 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 Pfam PF00005 ABC transporter 357 505 3.5E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_06145 8a2170e4d51e37c56150d7d6d27a7420 592 Gene3D G3DSA:1.20.1560.10 1 327 7.6E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 Pfam PF04055 Radical SAM superfamily 83 220 2.6E-10 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 Gene3D G3DSA:3.20.20.70 13 366 8.3E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 SUPERFAMILY SSF102114 39 362 4.45E-53 T 11-10-2018 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 5 369 3.0E-164 T 11-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 259 361 2.8E-23 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_19820 6922e86b7517ba64d576b42a0948bbc1 376 SMART SM00876 259 362 1.5E-30 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 3.0E-168 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 SUPERFAMILY SSF52540 1 514 2.96E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 Pfam PF02463 RecF/RecN/SMC N terminal domain 1 512 2.1E-19 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 PIRSF PIRSF003128 1 553 5.3E-158 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 Gene3D G3DSA:3.40.50.300 310 553 1.3E-51 T 11-10-2018 BED32_16345 0ee06b08c2fe3585a6a99a52a7e29604 553 Gene3D G3DSA:3.40.50.300 1 223 3.3E-44 T 11-10-2018 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 SMART SM00345 13 72 3.9E-15 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 Pfam PF00155 Aminotransferase class I and II 140 449 6.5E-24 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 Gene3D G3DSA:3.90.1150.10 96 467 2.2E-90 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 Gene3D G3DSA:1.10.10.10 5 74 5.6E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 SUPERFAMILY SSF53383 99 467 2.42E-80 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 Gene3D G3DSA:3.40.640.10 144 362 2.2E-90 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 1.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_20715 862f7802211ba3f5e206f7f89e6a0f5f 493 SUPERFAMILY SSF46785 9 76 4.54E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 71 - T 11-10-2018 IPR010916 TonB box, conserved site BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 752 769 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 Gene3D G3DSA:2.40.170.20 204 769 1.3E-219 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 Pfam PF00593 TonB dependent receptor 289 767 2.0E-49 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 Gene3D G3DSA:2.170.130.10 53 198 4.8E-42 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 SUPERFAMILY SSF56935 64 769 1.25E-126 T 11-10-2018 BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 Pfam PF07715 TonB-dependent Receptor Plug Domain 80 193 4.3E-27 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_17740 1fd781adf046b9cb36e694b242e98b97 769 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 81 769 6.2E-108 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BED32_12505 f490293cb4e6d3e69f966f2bbb60697e 239 Gene3D G3DSA:3.40.50.2300 1 143 3.0E-26 T 11-10-2018 BED32_12505 f490293cb4e6d3e69f966f2bbb60697e 239 PIRSF PIRSF006171 1 230 5.9E-78 T 11-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BED32_12505 f490293cb4e6d3e69f966f2bbb60697e 239 SUPERFAMILY SSF52172 1 136 3.27E-30 T 11-10-2018 IPR011006 CheY-like superfamily BED32_12505 f490293cb4e6d3e69f966f2bbb60697e 239 Pfam PF00072 Response regulator receiver domain 4 117 3.8E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_12505 f490293cb4e6d3e69f966f2bbb60697e 239 SMART SM00448 2 117 5.4E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_10820 3edaff786221f8f05616a941e09314d5 437 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 147 422 5.5E-88 T 11-10-2018 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 BED32_10820 3edaff786221f8f05616a941e09314d5 437 SUPERFAMILY SSF101960 42 433 4.97E-109 T 11-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BED32_10820 3edaff786221f8f05616a941e09314d5 437 Pfam PF01458 Uncharacterized protein family (UPF0051) 184 407 5.3E-71 T 11-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BED32_01390 2461986e7480484d2bd21710f9054407 261 TIGRFAM TIGR01252 acetolac_decarb: alpha-acetolactate decarboxylase 31 258 1.0E-92 T 11-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BED32_01390 2461986e7480484d2bd21710f9054407 261 Gene3D G3DSA:3.30.1330.80 31 247 3.9E-81 T 11-10-2018 BED32_01390 2461986e7480484d2bd21710f9054407 261 Gene3D G3DSA:3.30.1330.80 106 228 3.9E-81 T 11-10-2018 BED32_01390 2461986e7480484d2bd21710f9054407 261 PIRSF PIRSF001332 13 261 4.4E-95 T 11-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BED32_01390 2461986e7480484d2bd21710f9054407 261 Pfam PF03306 Alpha-acetolactate decarboxylase 31 248 1.0E-85 T 11-10-2018 IPR005128 Alpha-acetolactate decarboxylase GO:0045151|GO:0047605 KEGG: 00650+4.1.1.5|KEGG: 00660+4.1.1.5|MetaCyc: PWY-5939 BED32_01390 2461986e7480484d2bd21710f9054407 261 SUPERFAMILY SSF117856 31 260 5.75E-84 T 11-10-2018 BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 Gene3D G3DSA:3.20.20.140 52 445 4.3E-184 T 11-10-2018 BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 Pfam PF01979 Amidohydrolase family 48 429 1.6E-34 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 453 6.7E-222 T 11-10-2018 IPR010252 Formiminoglutamate deiminase BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 SUPERFAMILY SSF51338 378 436 5.37E-5 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 SUPERFAMILY SSF51556 50 357 1.23E-72 T 11-10-2018 IPR032466 Metal-dependent hydrolase BED32_10025 b15de7e6d022cb51668ebfec6e5aaf3b 456 Gene3D G3DSA:2.30.40.10 9 433 4.3E-184 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 BED32_19430 735165b36995a60dda5527123641d4b1 81 Pfam PF10636 Hemin uptake protein hemP 46 81 3.5E-17 T 11-10-2018 IPR019600 Hemin uptake protein HemP BED32_19430 735165b36995a60dda5527123641d4b1 81 Gene3D G3DSA:2.10.70.10 44 81 3.9E-17 T 11-10-2018 BED32_04050 5829b22a611a922f224e410d994bca95 335 SUPERFAMILY SSF56042 165 333 2.39E-42 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_04050 5829b22a611a922f224e410d994bca95 335 PIRSF PIRSF005644 1 335 1.6E-122 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE BED32_04050 5829b22a611a922f224e410d994bca95 335 Gene3D G3DSA:3.30.1330.10 7 160 1.6E-57 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_04050 5829b22a611a922f224e410d994bca95 335 Gene3D G3DSA:3.90.650.10 161 335 9.1E-51 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_04050 5829b22a611a922f224e410d994bca95 335 SUPERFAMILY SSF55326 5 158 4.19E-34 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_04050 5829b22a611a922f224e410d994bca95 335 Pfam PF02769 AIR synthase related protein, C-terminal domain 167 314 2.2E-27 T 11-10-2018 IPR010918 PurM-like, C-terminal domain BED32_04050 5829b22a611a922f224e410d994bca95 335 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 6 335 1.6E-135 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE BED32_04050 5829b22a611a922f224e410d994bca95 335 Pfam PF00586 AIR synthase related protein, N-terminal domain 55 155 2.1E-17 T 11-10-2018 IPR016188 PurM-like, N-terminal domain BED32_20375 12147da77475da865b387307c6d2e807 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 3.4E-112 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 1.4E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 1.4E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 1.4E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 1.4E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 1.4E-49 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.401 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 Gene3D G3DSA:3.40.190.10 6 216 1.1E-82 T 11-10-2018 BED32_20375 12147da77475da865b387307c6d2e807 313 SUPERFAMILY SSF53850 5 219 1.52E-84 T 11-10-2018 BED32_20375 12147da77475da865b387307c6d2e807 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 SUPERFAMILY SSF54782 220 309 5.1E-30 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 PIRSF PIRSF001438 1 311 9.7E-121 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 Gene3D G3DSA:3.40.190.10 100 199 1.1E-82 T 11-10-2018 BED32_20375 12147da77475da865b387307c6d2e807 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 9.0E-77 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 226 295 7.0E-23 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20375 12147da77475da865b387307c6d2e807 313 Gene3D G3DSA:3.30.160.40 221 306 4.6E-32 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_10120 3c0ad795ca9caf41b2e7041350c201fa 403 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 397 1.5E-180 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_10120 3c0ad795ca9caf41b2e7041350c201fa 403 Pfam PF03616 Sodium/glutamate symporter 2 366 5.1E-152 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_10120 3c0ad795ca9caf41b2e7041350c201fa 403 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.27 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_18830 c89e62507e80a79cd5181732f278af43 674 Pfam PF07940 Heparinase II/III-like protein 375 553 7.5E-19 T 11-10-2018 IPR012480 Heparinase II/III-like GO:0016829 BED32_18830 c89e62507e80a79cd5181732f278af43 674 Gene3D G3DSA:1.50.10.100 71 357 1.1E-67 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_18830 c89e62507e80a79cd5181732f278af43 674 Gene3D G3DSA:2.70.98.70 373 670 5.7E-43 T 11-10-2018 BED32_18830 c89e62507e80a79cd5181732f278af43 674 SUPERFAMILY SSF48230 24 317 2.47E-36 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_06110 3ebe9651edaa0c198396e038c43aeb83 135 PIRSF PIRSF003230 1 134 6.1E-22 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BED32_06110 3ebe9651edaa0c198396e038c43aeb83 135 Pfam PF13279 Thioesterase-like superfamily 12 126 7.1E-15 T 11-10-2018 BED32_06110 3ebe9651edaa0c198396e038c43aeb83 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 6 118 1.2E-28 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 BED32_06110 3ebe9651edaa0c198396e038c43aeb83 135 SUPERFAMILY SSF54637 2 130 1.61E-36 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_06110 3ebe9651edaa0c198396e038c43aeb83 135 Gene3D G3DSA:3.10.129.10 1 133 3.8E-34 T 11-10-2018 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 1.5E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 1.5E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 1.5E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 1.5E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 SMART SM00418 6 84 2.8E-32 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 Gene3D G3DSA:1.10.10.10 1 88 1.3E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 Pfam PF01022 Bacterial regulatory protein, arsR family 13 58 7.3E-16 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 SUPERFAMILY SSF46785 2 98 1.28E-26 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_00165 9a74a5ed1657c0ec7b1848d026bdf544 106 ProSitePatterns PS00846 Bacterial regulatory proteins, arsR family signature. 30 48 - T 11-10-2018 IPR018334 ArsR-type transcription regulator, HTH motif GO:0003700|GO:0005622|GO:0006355 BED32_13040 840ab561462e96637981821acbfd18d7 415 Pfam PF12704 MacB-like periplasmic core domain 28 239 6.3E-15 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_13040 840ab561462e96637981821acbfd18d7 415 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 414 2.6E-157 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 BED32_13040 840ab561462e96637981821acbfd18d7 415 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 6 415 4.7E-212 T 11-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 BED32_13040 840ab561462e96637981821acbfd18d7 415 Pfam PF02687 FtsX-like permease family 303 408 1.8E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 PIRSF PIRSF004848 1 231 1.5E-73 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 1.8E-91 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 Pfam PF01168 Alanine racemase, N-terminal domain 7 230 8.9E-28 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 SUPERFAMILY SSF51419 1 228 4.58E-80 T 11-10-2018 IPR029066 PLP-binding barrel BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 229 33.184 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 BED32_04350 02229e6c1f59b5641143da9bcedd2b24 231 Gene3D G3DSA:3.20.20.10 1 231 9.2E-83 T 11-10-2018 IPR029066 PLP-binding barrel BED32_19635 3b93f246813544fcd82c6d439c258c0d 196 Pfam PF05802 Enterobacterial EspB protein 34 192 3.4E-5 T 11-10-2018 IPR008611 Protein EaeB BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 SUPERFAMILY SSF53850 41 345 1.23E-65 T 11-10-2018 BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 27 347 6.8E-165 T 11-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 Gene3D G3DSA:3.40.190.10 43 317 2.0E-120 T 11-10-2018 BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 39 341 1.3E-145 T 11-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 Pfam PF01547 Bacterial extracellular solute-binding protein 60 292 1.5E-17 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_18020 4dfd9ed1a342aaa7d7182f36f5d22f93 347 Gene3D G3DSA:3.40.190.10 143 342 2.0E-120 T 11-10-2018 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 SUPERFAMILY SSF52540 20 258 1.18E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 SMART SM00382 44 227 2.6E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 Gene3D G3DSA:3.40.50.300 19 237 3.1E-70 T 11-10-2018 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 Gene3D G3DSA:2.40.50.940 238 353 5.0E-11 T 11-10-2018 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 SUPERFAMILY SSF50331 254 358 2.33E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 Gene3D G3DSA:2.40.50.140 294 350 5.0E-11 T 11-10-2018 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 Pfam PF00005 ABC transporter 36 177 1.1E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 Pfam PF08402 TOBE domain 287 358 4.7E-10 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_09185 0c419cfe3dff02b351b2cfe0210500c5 363 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_20725 db9d39e06e9ea3079cc744ccd983e369 184 SUPERFAMILY SSF158668 6 170 1.7E-57 T 11-10-2018 IPR038026 MtlR-like superfamily BED32_20725 db9d39e06e9ea3079cc744ccd983e369 184 Gene3D G3DSA:1.20.120.330 3 172 5.6E-62 T 11-10-2018 BED32_20725 db9d39e06e9ea3079cc744ccd983e369 184 Pfam PF05068 Mannitol repressor 9 170 1.2E-62 T 11-10-2018 IPR007761 Mannitol repressor MtlR-like BED32_07240 55f8019940959ca989d804e6dfe80b17 107 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 16 102 1.3E-7 T 11-10-2018 IPR009241 Toxin HigB-like BED32_20560 55f8019940959ca989d804e6dfe80b17 107 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 16 102 1.3E-7 T 11-10-2018 IPR009241 Toxin HigB-like BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 Pfam PF02277 Phosphoribosyltransferase 11 344 2.1E-118 T 11-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 13 347 33.364 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 Gene3D G3DSA:3.40.50.10210 57 328 4.6E-128 T 11-10-2018 BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 15 345 1.2E-119 T 11-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 SUPERFAMILY SSF52733 6 346 7.59E-111 T 11-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BED32_09050 586f09a955f3f53db5c82cc5bb92c32d 352 Gene3D G3DSA:1.10.1610.10 11 337 4.6E-128 T 11-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 BED32_18180 656f99a85e893a9288f6880f033faae1 635 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 1.4E-289 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BED32_18180 656f99a85e893a9288f6880f033faae1 635 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Pfam PF00012 Hsp70 protein 4 602 1.8E-264 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 SUPERFAMILY SSF100920 384 540 1.22E-60 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Gene3D G3DSA:1.20.1270.10 524 603 3.4E-29 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 SUPERFAMILY SSF100934 535 608 7.85E-7 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 631 36.711 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Gene3D G3DSA:3.90.640.10 229 316 6.1E-171 T 11-10-2018 BED32_18180 656f99a85e893a9288f6880f033faae1 635 SUPERFAMILY SSF53067 187 382 8.43E-68 T 11-10-2018 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Gene3D G3DSA:2.60.34.10 383 523 8.3E-67 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Gene3D G3DSA:3.30.420.40 180 366 6.1E-171 T 11-10-2018 BED32_18180 656f99a85e893a9288f6880f033faae1 635 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 SUPERFAMILY SSF53067 4 183 1.3E-65 T 11-10-2018 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 138 158 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 334 350 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 469 485 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 198 208 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 388 407 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 PRINTS PR00301 70kDa heat shock protein signature 365 385 4.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 BED32_18180 656f99a85e893a9288f6880f033faae1 635 Gene3D G3DSA:3.30.420.40 5 379 6.1E-171 T 11-10-2018 BED32_08705 d65bdd3f48dbd9de69dd0bfdb20110dc 297 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 5 273 3.1E-103 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 BED32_08705 d65bdd3f48dbd9de69dd0bfdb20110dc 297 SUPERFAMILY SSF53448 1 290 1.51E-57 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08705 d65bdd3f48dbd9de69dd0bfdb20110dc 297 Pfam PF00483 Nucleotidyl transferase 5 253 4.4E-22 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_08705 d65bdd3f48dbd9de69dd0bfdb20110dc 297 Gene3D G3DSA:3.90.550.10 2 297 2.4E-80 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_20230 8586470db2c827487b653e85ed20f4e3 84 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 11-10-2018 IPR001455 TusA-like domain BED32_20230 8586470db2c827487b653e85ed20f4e3 84 Gene3D G3DSA:3.30.110.40 1 81 1.5E-31 T 11-10-2018 IPR036868 TusA-like domain superfamily BED32_20230 8586470db2c827487b653e85ed20f4e3 84 Hamap MF_00413 Sulfur carrier protein TusA [tusA]. 3 81 29.368 T 11-10-2018 IPR022931 Sulfur carrier protein TusA GO:0002143|GO:0097163 BED32_20230 8586470db2c827487b653e85ed20f4e3 84 Pfam PF01206 Sulfurtransferase TusA 10 79 8.7E-25 T 11-10-2018 IPR001455 TusA-like domain BED32_20230 8586470db2c827487b653e85ed20f4e3 84 SUPERFAMILY SSF64307 4 80 9.29E-27 T 11-10-2018 IPR036868 TusA-like domain superfamily BED32_16385 528bf3adcd3e9846467d88ce5a272f26 253 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 3 250 40.484 T 11-10-2018 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 BED32_16385 528bf3adcd3e9846467d88ce5a272f26 253 Pfam PF04794 YdjC-like protein 5 241 1.5E-62 T 11-10-2018 IPR006879 Carbohydrate deacetylase YdjC-like BED32_16385 528bf3adcd3e9846467d88ce5a272f26 253 SUPERFAMILY SSF88713 1 253 2.67E-77 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BED32_16385 528bf3adcd3e9846467d88ce5a272f26 253 Gene3D G3DSA:3.20.20.370 1 253 1.1E-71 T 11-10-2018 BED32_02975 a83b9962d63bda2bbfb870e4ada223d9 208 Pfam PF05494 MlaC protein 31 195 4.0E-52 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BED32_02975 a83b9962d63bda2bbfb870e4ada223d9 208 Gene3D G3DSA:3.10.450.710 21 200 1.4E-41 T 11-10-2018 BED32_02975 a83b9962d63bda2bbfb870e4ada223d9 208 PIRSF PIRSF004649 1 208 1.2E-58 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC BED32_06100 203f20c2ddb4fca9b3688532eb4165d7 628 Gene3D G3DSA:3.10.50.40 266 366 2.7E-30 T 11-10-2018 BED32_06100 203f20c2ddb4fca9b3688532eb4165d7 628 Pfam PF13145 PPIC-type PPIASE domain 249 370 7.7E-25 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 BED32_06100 203f20c2ddb4fca9b3688532eb4165d7 628 SUPERFAMILY SSF109998 39 240 3.27E-36 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily BED32_06100 203f20c2ddb4fca9b3688532eb4165d7 628 SUPERFAMILY SSF54534 225 356 4.32E-23 T 11-10-2018 BED32_06100 203f20c2ddb4fca9b3688532eb4165d7 628 Pfam PF13624 SurA N-terminal domain 1 166 3.3E-53 T 11-10-2018 BED32_19020 e7e9603c72d9bc2ef6e812f65ab4f2d8 323 Gene3D G3DSA:1.10.600.10 1 322 4.1E-122 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily BED32_19020 e7e9603c72d9bc2ef6e812f65ab4f2d8 323 SUPERFAMILY SSF48576 5 322 1.76E-97 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily BED32_19020 e7e9603c72d9bc2ef6e812f65ab4f2d8 323 Pfam PF00348 Polyprenyl synthetase 32 261 2.6E-76 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BED32_19020 e7e9603c72d9bc2ef6e812f65ab4f2d8 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site BED32_19020 e7e9603c72d9bc2ef6e812f65ab4f2d8 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site BED32_12260 b1e64adec643fbd296735df28e245c77 644 PIRSF PIRSF000549 1 644 2.0E-285 T 11-10-2018 IPR016230 Serine-protein kinase, PrkA GO:0004672 BED32_12260 b1e64adec643fbd296735df28e245c77 644 SUPERFAMILY SSF52540 75 368 1.58E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12260 b1e64adec643fbd296735df28e245c77 644 SMART SM00763 19 380 6.6E-214 T 11-10-2018 IPR013153 PrkA AAA domain BED32_12260 b1e64adec643fbd296735df28e245c77 644 Pfam PF08298 PrkA AAA domain 20 380 4.6E-175 T 11-10-2018 IPR013153 PrkA AAA domain BED32_12260 b1e64adec643fbd296735df28e245c77 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 1.4E-72 T 11-10-2018 IPR010650 PrkA C-terminal domain BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 SUPERFAMILY SSF55021 7 87 5.83E-17 T 11-10-2018 BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 Gene3D G3DSA:3.30.70.260 5 89 8.1E-26 T 11-10-2018 BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 PIRSF PIRSF028103 5 180 1.2E-64 T 11-10-2018 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 SUPERFAMILY SSF55021 91 179 2.12E-18 T 11-10-2018 BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 Pfam PF13740 ACT domain 7 82 4.0E-26 T 11-10-2018 BED32_15645 f356a16a000d4d0c2cef32e91bc77ea9 189 Gene3D G3DSA:3.30.70.260 91 188 3.5E-32 T 11-10-2018 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 18 569 46.08 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Gene3D G3DSA:3.90.1310.30 58 234 1.7E-44 T 11-10-2018 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Pfam PF03717 Penicillin-binding Protein dimerisation domain 67 219 1.1E-18 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Gene3D G3DSA:3.40.710.10 295 475 3.6E-111 T 11-10-2018 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Pfam PF00905 Penicillin binding protein transpeptidase domain 259 553 1.6E-81 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 SUPERFAMILY SSF56519 62 233 9.03E-45 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 SUPERFAMILY SSF56601 234 562 9.98E-86 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_17910 2275d930c636b8813fb0a4fd06dcb1a9 587 Gene3D G3DSA:3.30.450.330 236 549 3.6E-111 T 11-10-2018 BED32_08960 5a3ac7d5c37e90a9d1e97e2e0448634b 210 SUPERFAMILY SSF63965 9 207 4.19E-64 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 BED32_08960 5a3ac7d5c37e90a9d1e97e2e0448634b 210 Gene3D G3DSA:3.40.50.10230 1 209 6.5E-71 T 11-10-2018 IPR036588 Precorrin-8X methylmutase CobH/CbiC superfamily GO:0009236|GO:0016993 BED32_08960 5a3ac7d5c37e90a9d1e97e2e0448634b 210 Pfam PF02570 Precorrin-8X methylmutase 9 204 1.0E-66 T 11-10-2018 IPR003722 Cobalamin biosynthesis precorrin-8X methylmutase CobH/CbiC GO:0009236|GO:0016993 BED32_00365 32333ad3d7024661422670168da8b03a 271 SMART SM00342 180 263 1.0E-30 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_00365 32333ad3d7024661422670168da8b03a 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 232 247 5.0E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_00365 32333ad3d7024661422670168da8b03a 271 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 247 263 5.0E-8 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_00365 32333ad3d7024661422670168da8b03a 271 SUPERFAMILY SSF46689 216 263 1.22E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00365 32333ad3d7024661422670168da8b03a 271 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 217 259 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_00365 32333ad3d7024661422670168da8b03a 271 SUPERFAMILY SSF51215 21 145 9.68E-7 T 11-10-2018 IPR037923 Transcription regulator HTH-like BED32_00365 32333ad3d7024661422670168da8b03a 271 Gene3D G3DSA:1.10.10.60 159 268 2.2E-27 T 11-10-2018 BED32_00365 32333ad3d7024661422670168da8b03a 271 Pfam PF12833 Helix-turn-helix domain 187 263 2.9E-23 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_05960 9ab4c5807aac2dea3ce26371c801295d 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 4.1E-59 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_05960 9ab4c5807aac2dea3ce26371c801295d 156 Gene3D G3DSA:3.40.50.960 1 156 8.5E-64 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_05960 9ab4c5807aac2dea3ce26371c801295d 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 1.2E-55 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_05960 9ab4c5807aac2dea3ce26371c801295d 156 SUPERFAMILY SSF52121 3 154 4.45E-60 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_05960 9ab4c5807aac2dea3ce26371c801295d 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.977 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_21235 c9444ae2d363c606921f21f10e8f75f3 296 PIRSF PIRSF035875 5 295 1.5E-60 T 11-10-2018 IPR017039 Virulence factor BrkB BED32_21235 c9444ae2d363c606921f21f10e8f75f3 296 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 19 277 1.1E-90 T 11-10-2018 IPR017039 Virulence factor BrkB BED32_21235 c9444ae2d363c606921f21f10e8f75f3 296 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 13 288 23.123 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial BED32_21235 c9444ae2d363c606921f21f10e8f75f3 296 Pfam PF03631 Virulence factor BrkB 29 276 3.7E-54 T 11-10-2018 IPR017039 Virulence factor BrkB BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 2.8E-17 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 2.8E-17 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 2.8E-17 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 2.8E-17 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 Pfam PF01165 Ribosomal protein S21 4 56 6.3E-22 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 Gene3D G3DSA:1.20.5.1150 16 54 2.1E-21 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 1.0E-15 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.1E-24 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03410 e0f63aa874b218a4c9d359851efe3e90 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.283 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_09240 9f010670a331e75b6089a1422c31659d 97 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 1 80 4.0E-26 T 11-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 BED32_09240 9f010670a331e75b6089a1422c31659d 97 PIRSF PIRSF002736 1 97 3.1E-36 T 11-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 BED32_09240 9f010670a331e75b6089a1422c31659d 97 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 1.5E-29 T 11-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 BED32_09240 9f010670a331e75b6089a1422c31659d 97 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 25.529 T 11-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 BED32_09240 9f010670a331e75b6089a1422c31659d 97 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 9.1E-28 T 11-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein BED32_03360 9c7f75e854e75a1a02acdf0049c843e3 120 Gene3D G3DSA:3.30.1360.60 3 79 2.9E-19 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_03360 9c7f75e854e75a1a02acdf0049c843e3 120 SUPERFAMILY SSF55604 9 80 2.09E-17 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_03360 9c7f75e854e75a1a02acdf0049c843e3 120 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_03360 9c7f75e854e75a1a02acdf0049c843e3 120 Pfam PF00367 phosphotransferase system, EIIB 11 42 2.8E-12 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 SMART SM00644 36 182 4.8E-28 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 Gene3D G3DSA:1.10.101.10 197 280 1.6E-29 T 11-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 45 183 1.9E-28 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 Gene3D G3DSA:3.40.80.10 46 196 1.7E-49 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 SUPERFAMILY SSF55846 29 198 1.44E-53 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 Pfam PF01471 Putative peptidoglycan binding domain 216 269 3.0E-10 T 11-10-2018 IPR002477 Peptidoglycan binding-like BED32_10470 c0804150da0fe569d413d39c5f9d4ac6 283 SUPERFAMILY SSF47090 201 280 2.67E-22 T 11-10-2018 IPR036365 PGBD-like superfamily BED32_08920 9111954ea5b3c73356e6987a851fb5b8 223 Pfam PF02288 Dehydratase medium subunit 68 180 6.7E-33 T 11-10-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor BED32_08920 9111954ea5b3c73356e6987a851fb5b8 223 Gene3D G3DSA:3.40.50.10150 45 223 1.0E-88 T 11-10-2018 IPR010254 B12-dependent dehydratases, beta subunit BED32_08920 9111954ea5b3c73356e6987a851fb5b8 223 PIRSF PIRSF018506 1 223 2.7E-109 T 11-10-2018 IPR025541 Propanediol/glycerol dehydratase, medium subunit KEGG: 00640+4.2.1.28|MetaCyc: PWY-7013 BED32_08920 9111954ea5b3c73356e6987a851fb5b8 223 SUPERFAMILY SSF52968 46 223 4.71E-71 T 11-10-2018 IPR010254 B12-dependent dehydratases, beta subunit BED32_03375 ac5236f05210b501257868c3e34a9b63 623 Gene3D G3DSA:3.40.50.1700 415 622 1.4E-27 T 11-10-2018 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 Gene3D G3DSA:3.20.20.300 31 414 3.3E-120 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 PRINTS PR00133 Glycosyl hydrolase family 3 signature 139 158 1.2E-5 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 PRINTS PR00133 Glycosyl hydrolase family 3 signature 303 321 1.2E-5 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 PRINTS PR00133 Glycosyl hydrolase family 3 signature 217 233 1.2E-5 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 PRINTS PR00133 Glycosyl hydrolase family 3 signature 114 130 1.2E-5 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 SUPERFAMILY SSF51445 25 419 1.54E-83 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_03375 ac5236f05210b501257868c3e34a9b63 623 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 303 320 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 BED32_03375 ac5236f05210b501257868c3e34a9b63 623 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 45 389 6.4E-85 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 BED32_17160 e7119f83b82e7e468e1ad2203978255c 236 SMART SM00862 39 112 4.4E-14 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_17160 e7119f83b82e7e468e1ad2203978255c 236 SUPERFAMILY SSF46894 20 112 3.4E-17 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_17160 e7119f83b82e7e468e1ad2203978255c 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 43 112 1.2E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_17160 e7119f83b82e7e468e1ad2203978255c 236 Gene3D G3DSA:1.10.10.10 17 128 4.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 Pfam PF07690 Major Facilitator Superfamily 34 400 9.1E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 Gene3D G3DSA:1.20.1250.20 240 450 4.3E-63 T 11-10-2018 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 440 4.1E-261 T 11-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 ProSitePatterns PS00942 glpT family of transporters signature. 153 169 - T 11-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 Gene3D G3DSA:1.20.1250.20 18 226 7.1E-58 T 11-10-2018 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 35 417 3.8E-164 T 11-10-2018 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 PIRSF PIRSF002808 5 451 1.4E-171 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 BED32_20260 79adf12deb8a83c77112fa1ae1841bd4 451 SUPERFAMILY SSF103473 13 442 1.44E-83 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_05020 9fa4de24fc08e475636c0488f877064b 373 Gene3D G3DSA:3.40.50.720 81 246 1.7E-43 T 11-10-2018 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 SUPERFAMILY SSF48179 241 366 1.13E-41 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 Gene3D G3DSA:1.20.59.10 1 80 2.0E-16 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 8.0E-45 T 11-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 SMART SM00830 9 89 5.9E-31 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 SUPERFAMILY SSF48600 4 88 4.94E-24 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 SUPERFAMILY SSF51735 91 238 9.05E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_05020 9fa4de24fc08e475636c0488f877064b 373 PIRSF PIRSF001499 1 373 6.3E-184 T 11-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 Gene3D G3DSA:1.10.3660.10 248 373 2.7E-51 T 11-10-2018 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 Pfam PF02153 Prephenate dehydrogenase 138 344 9.1E-33 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 BED32_05020 9fa4de24fc08e475636c0488f877064b 373 Pfam PF01817 Chorismate mutase type II 9 86 1.1E-20 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 PIRSF PIRSF001362 1 435 9.2E-225 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 SUPERFAMILY SSF51621 5 435 4.35E-154 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 Pfam PF00463 Isocitrate lyase family 257 435 1.3E-48 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 Pfam PF00463 Isocitrate lyase family 9 256 3.1E-61 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 257 435 1.1E-88 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 9 256 4.2E-114 T 11-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 Gene3D G3DSA:3.20.20.60 1 418 3.0E-186 T 11-10-2018 BED32_02125 98406fa7a394c183855df2e0cc386f98 435 ProSitePatterns PS00161 Isocitrate lyase signature. 194 199 - T 11-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 BED32_03055 ebae7029468e1544972167895c55eb4c 300 SMART SM00729 23 247 4.6E-41 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_03055 ebae7029468e1544972167895c55eb4c 300 Pfam PF16199 Radical_SAM C-terminal domain 208 283 8.7E-18 T 11-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 BED32_03055 ebae7029468e1544972167895c55eb4c 300 SUPERFAMILY SSF102114 13 267 1.44E-45 T 11-10-2018 BED32_03055 ebae7029468e1544972167895c55eb4c 300 Pfam PF04055 Radical SAM superfamily 43 202 5.2E-17 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_03055 ebae7029468e1544972167895c55eb4c 300 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 295 3.3E-132 T 11-10-2018 IPR005911 Protein YhcC-like GO:0051536 BED32_03055 ebae7029468e1544972167895c55eb4c 300 Gene3D G3DSA:3.80.30.20 42 290 3.4E-17 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 Gene3D G3DSA:3.40.718.10 1 333 5.6E-120 T 11-10-2018 BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 PIRSF PIRSF002465 1 334 1.9E-121 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 332 1.3E-131 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 SUPERFAMILY SSF53659 1 330 2.67E-99 T 11-10-2018 BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 334 143.287 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 BED32_13185 ae80acdeff2ca8e183105eb819a146d4 334 Pfam PF02504 Fatty acid synthesis protein 1 321 2.7E-114 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 PRINTS PR00160 Glutaredoxin signature 66 79 3.4E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 PRINTS PR00160 Glutaredoxin signature 52 65 3.4E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 PRINTS PR00160 Glutaredoxin signature 3 21 3.4E-12 T 11-10-2018 IPR014025 Glutaredoxin subgroup BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 3.2E-50 T 11-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 Pfam PF00462 Glutaredoxin 4 69 2.6E-17 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 SUPERFAMILY SSF52833 4 82 1.15E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 Gene3D G3DSA:3.40.30.10 3 85 1.9E-25 T 11-10-2018 BED32_13925 e8e122269cbe4b0a09197b2caf5577e7 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 BED32_13640 5df51a9e1f1394c24f93402552264186 328 Gene3D G3DSA:2.20.25.120 94 127 5.1E-5 T 11-10-2018 BED32_13640 5df51a9e1f1394c24f93402552264186 328 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 19 320 2.0E-110 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BED32_13640 5df51a9e1f1394c24f93402552264186 328 Gene3D G3DSA:3.40.50.300 58 145 5.1E-5 T 11-10-2018 BED32_13640 5df51a9e1f1394c24f93402552264186 328 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 321 40.868 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BED32_13640 5df51a9e1f1394c24f93402552264186 328 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 13 319 1.5E-114 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 BED32_13640 5df51a9e1f1394c24f93402552264186 328 SUPERFAMILY SSF52540 46 182 2.34E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 Pfam PF01197 Ribosomal protein L31 1 78 1.5E-24 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 Gene3D G3DSA:2.30.170.50 1 83 1.1E-21 T 11-10-2018 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 PRINTS PR01249 Ribosomal protein L31 signature 59 77 2.4E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.4E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 PRINTS PR01249 Ribosomal protein L31 signature 44 59 2.4E-14 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 SUPERFAMILY SSF143800 1 80 3.88E-22 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 2.5E-16 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06215 7db8c1721dd6445259ea2c66eb80bc2a 86 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 26.024 T 11-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 SUPERFAMILY SSF63411 36 263 8.62E-52 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 SUPERFAMILY SSF63411 267 503 4.22E-68 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 SUPERFAMILY SSF63411 748 956 2.17E-42 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 SUPERFAMILY SSF63411 506 731 1.83E-48 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 77 100 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Pfam PF16187 Middle or third domain of peptidase_M16 402 672 3.2E-58 T 11-10-2018 IPR032632 Peptidase M16, middle/third domain BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Pfam PF05193 Peptidase M16 inactive domain 683 860 1.5E-9 T 11-10-2018 IPR007863 Peptidase M16, C-terminal BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Pfam PF05193 Peptidase M16 inactive domain 218 394 1.5E-19 T 11-10-2018 IPR007863 Peptidase M16, C-terminal BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Gene3D G3DSA:3.30.830.10 506 887 5.1E-131 T 11-10-2018 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Gene3D G3DSA:3.30.830.10 275 504 3.0E-70 T 11-10-2018 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Gene3D G3DSA:3.30.830.10 27 273 2.1E-78 T 11-10-2018 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Gene3D G3DSA:3.30.830.10 654 919 5.1E-131 T 11-10-2018 BED32_17030 e92bd47ef756baf1b0c5534e3a29198e 963 Pfam PF00675 Insulinase (Peptidase family M16) 57 193 2.5E-34 T 11-10-2018 IPR011765 Peptidase M16, N-terminal BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 TIGRFAM TIGR01502 B_methylAsp_ase: methylaspartate ammonia-lyase 2 411 6.3E-162 T 11-10-2018 IPR006395 Methylaspartate ammonia-lyase GO:0050096 KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 SUPERFAMILY SSF51604 164 411 3.01E-76 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 SUPERFAMILY SSF54826 1 159 9.28E-58 T 11-10-2018 BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 Gene3D G3DSA:3.20.20.120 165 413 2.3E-106 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 PIRSF PIRSF017107 1 413 1.8E-221 T 11-10-2018 IPR006395 Methylaspartate ammonia-lyase GO:0050096 KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 Pfam PF05034 Methylaspartate ammonia-lyase N-terminus 1 159 1.2E-70 T 11-10-2018 IPR022665 Methylaspartate ammonia-lyase, N-terminal KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 Gene3D G3DSA:3.30.390.10 1 164 8.1E-72 T 11-10-2018 IPR029017 Enolase-like, N-terminal BED32_01250 324df38ab61a21df72a0fe7dfba93820 414 Pfam PF07476 Methylaspartate ammonia-lyase C-terminus 162 409 2.4E-115 T 11-10-2018 IPR022662 Methylaspartate ammonia-lyase, C-terminal KEGG: 00630+4.3.1.2|KEGG: 00660+4.3.1.2|MetaCyc: PWY-5087|MetaCyc: PWY-6728 BED32_21085 d427f82bdbc697ebda432269f62e122c 902 SMART SM00778 31 67 1.9E-12 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_21085 d427f82bdbc697ebda432269f62e122c 902 SUPERFAMILY SSF57783 17 97 4.59E-10 T 11-10-2018 BED32_21085 d427f82bdbc697ebda432269f62e122c 902 Pfam PF06048 Domain of unknown function (DUF927) 349 628 5.0E-58 T 11-10-2018 IPR009270 Domain of unknown function DUF927 BED32_21085 d427f82bdbc697ebda432269f62e122c 902 Pfam PF08273 Zinc-binding domain of primase-helicase 33 67 1.7E-12 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_21085 d427f82bdbc697ebda432269f62e122c 902 Pfam PF13362 Toprim domain 198 303 6.3E-7 T 11-10-2018 IPR006171 TOPRIM domain BED32_02960 a0f4e1b009524a81602a3feeb2130e82 267 SUPERFAMILY SSF52540 8 237 1.61E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02960 a0f4e1b009524a81602a3feeb2130e82 267 Pfam PF00005 ABC transporter 26 172 3.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02960 a0f4e1b009524a81602a3feeb2130e82 267 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_02960 a0f4e1b009524a81602a3feeb2130e82 267 SMART SM00382 33 230 3.1E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_02960 a0f4e1b009524a81602a3feeb2130e82 267 Gene3D G3DSA:3.40.50.300 6 249 5.3E-64 T 11-10-2018 BED32_08650 e0cdb243c47c0a134a73f6772dd0d1a7 187 Gene3D G3DSA:2.60.120.10 1 187 3.8E-66 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_08650 e0cdb243c47c0a134a73f6772dd0d1a7 187 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 187 2.0E-107 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BED32_08650 e0cdb243c47c0a134a73f6772dd0d1a7 187 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 182 5.0E-67 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BED32_08650 e0cdb243c47c0a134a73f6772dd0d1a7 187 SUPERFAMILY SSF51182 1 185 3.95E-68 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_08650 e0cdb243c47c0a134a73f6772dd0d1a7 187 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 3 184 7.5E-73 T 11-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 SMART SM00421 148 205 1.9E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 Gene3D G3DSA:3.30.450.20 10 125 2.1E-5 T 11-10-2018 BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 SUPERFAMILY SSF46894 141 210 8.16E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 Pfam PF08448 PAS fold 16 126 1.4E-6 T 11-10-2018 IPR013656 PAS fold-4 BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 SUPERFAMILY SSF55785 5 123 8.19E-5 T 11-10-2018 IPR035965 PAS domain superfamily BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 Gene3D G3DSA:1.10.10.10 145 211 3.3E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21210 ad05bd934b87b4254e7c9a9dbb02aa4c 228 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 3.0E-12 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 ProSitePatterns PS00694 Enterobacterial virulence outer membrane protein signature 1. 47 55 - T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 Pfam PF13505 Outer membrane protein beta-barrel domain 9 175 1.4E-23 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 Gene3D G3DSA:2.40.160.20 25 175 8.5E-49 T 11-10-2018 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 87 110 4.5E-36 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 163 174 4.5E-36 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 46 58 4.5E-36 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 PRINTS PR00316 Enterobacterial virulence outer membrane protein signature 136 157 4.5E-36 T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_08335 ab8b4e33718677a5e2b9ebf16760808a 175 SUPERFAMILY SSF56925 28 175 1.7E-30 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_15440 e4b34d5184fa9a383c3e5c626ba208ff 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 6.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_15440 e4b34d5184fa9a383c3e5c626ba208ff 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 Pfam PF17152 Periplasmic sensor domain 55 156 1.3E-31 T 11-10-2018 IPR033417 Periplasmic sensor domain CHASE8 BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 Pfam PF00990 Diguanylate cyclase, GGDEF domain 259 412 4.1E-49 T 11-10-2018 IPR000160 GGDEF domain BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 SUPERFAMILY SSF55073 264 414 4.63E-47 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 Gene3D G3DSA:3.30.70.270 253 418 1.2E-54 T 11-10-2018 BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 255 412 8.5E-45 T 11-10-2018 IPR000160 GGDEF domain BED32_18285 55a21812f5f6c420ffef4a239f0ffbb7 448 SMART SM00267 248 420 4.3E-63 T 11-10-2018 IPR000160 GGDEF domain BED32_00700 96d74e09f25583b4bedbb0a65e4fa0e7 146 Pfam PF07226 Protein of unknown function (DUF1422) 15 126 2.6E-50 T 11-10-2018 IPR009867 Protein of unknown function DUF1422 BED32_00700 96d74e09f25583b4bedbb0a65e4fa0e7 146 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 14 126 1.0E-40 T 11-10-2018 IPR009867 Protein of unknown function DUF1422 BED32_12030 87c236c3863f1f96f4fc280fd481b8d7 135 Pfam PF03692 Putative zinc- or iron-chelating domain 7 98 1.2E-9 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 Gene3D G3DSA:3.90.226.10 317 539 1.1E-163 T 11-10-2018 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 Pfam PF01343 Peptidase family S49 390 541 4.0E-47 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 Pfam PF01343 Peptidase family S49 139 289 1.7E-36 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 SUPERFAMILY SSF52096 34 286 4.77E-28 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 607 1.4E-223 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 Gene3D G3DSA:3.90.226.10 95 316 1.1E-163 T 11-10-2018 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 326 539 2.2E-51 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 Gene3D G3DSA:3.40.1750.10 187 496 1.1E-163 T 11-10-2018 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 PIRSF PIRSF001217 8 616 1.1E-215 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 BED32_12215 a9eea779dd8bd7ab668fc500bf5dc841 617 SUPERFAMILY SSF52096 316 528 2.44E-41 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_14175 1d6f274bc280560426ab27cd13b7bc41 520 Pfam PF00563 EAL domain 272 505 4.0E-63 T 11-10-2018 IPR001633 EAL domain BED32_14175 1d6f274bc280560426ab27cd13b7bc41 520 Gene3D G3DSA:3.20.20.450 265 520 4.2E-75 T 11-10-2018 IPR035919 EAL domain superfamily BED32_14175 1d6f274bc280560426ab27cd13b7bc41 520 SMART SM00052 265 510 3.5E-82 T 11-10-2018 IPR001633 EAL domain BED32_14175 1d6f274bc280560426ab27cd13b7bc41 520 SUPERFAMILY SSF141868 271 517 7.06E-72 T 11-10-2018 IPR035919 EAL domain superfamily BED32_14175 1d6f274bc280560426ab27cd13b7bc41 520 Pfam PF12792 CSS motif domain associated with EAL 46 243 9.7E-35 T 11-10-2018 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 SUPERFAMILY SSF51126 29 331 6.28E-29 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 SMART SM00869 388 637 8.0E-41 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 229 648 6.9E-115 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 Pfam PF03797 Autotransporter beta-domain 391 627 5.4E-50 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 Pfam PF03212 Pertactin 211 331 4.2E-31 T 11-10-2018 IPR004899 Pertactin, central region BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 Pfam PF16168 Adhesin of bacterial autotransporter system, probable stalk 77 127 3.2E-7 T 11-10-2018 IPR030930 Adhesin of bacterial autotransporter system BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 99 127 1.0E-5 T 11-10-2018 IPR030930 Adhesin of bacterial autotransporter system BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 PRINTS PR01484 Pertactin virulence factor family signature 429 453 1.6E-9 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 PRINTS PR01484 Pertactin virulence factor family signature 603 628 1.6E-9 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 PRINTS PR01484 Pertactin virulence factor family signature 628 648 1.6E-9 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 PRINTS PR01484 Pertactin virulence factor family signature 367 385 1.6E-9 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 PRINTS PR01484 Pertactin virulence factor family signature 565 586 1.6E-9 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 Gene3D G3DSA:2.160.20.20 22 336 2.8E-38 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 Gene3D G3DSA:2.40.128.130 346 648 8.9E-72 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_21965 546c3c56e981c184e7d58a51a9f28841 648 SUPERFAMILY SSF103515 357 648 8.89E-50 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_02380 662857b6a4c56e61c23933f4fa0ce2de 470 PIRSF PIRSF002457 2 470 2.0E-129 T 11-10-2018 IPR030676 Citrate carrier CitT-related BED32_02380 662857b6a4c56e61c23933f4fa0ce2de 470 Pfam PF00939 Sodium:sulfate symporter transmembrane region 7 470 3.8E-140 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BED32_02380 662857b6a4c56e61c23933f4fa0ce2de 470 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 25 464 1.7E-111 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 BED32_09955 47c173559ae1868cc3e425c5cc02e87d 482 PIRSF PIRSF006446 2 462 1.4E-229 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BED32_09955 47c173559ae1868cc3e425c5cc02e87d 482 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 2.4E-169 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 SMART SM00646 250 404 9.8E-63 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 Gene3D G3DSA:3.40.630.40 175 415 5.6E-90 T 11-10-2018 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 190 404 4.5E-51 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 SUPERFAMILY SSF53187 188 407 2.07E-54 T 11-10-2018 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 Gene3D G3DSA:2.60.40.3500 24 145 2.7E-35 T 11-10-2018 BED32_17010 260a14043a6734b1f605b0da7d4c962a 416 Pfam PF11741 AMIN domain 39 142 5.3E-28 T 11-10-2018 IPR021731 AMIN domain BED32_05430 320213786a907bc79c1cb1d59b19ea87 170 Pfam PF00959 Phage lysozyme 56 162 1.9E-27 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 BED32_05430 320213786a907bc79c1cb1d59b19ea87 170 SUPERFAMILY SSF53955 12 169 2.66E-56 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_05430 320213786a907bc79c1cb1d59b19ea87 170 Gene3D G3DSA:1.10.530.40 29 170 3.6E-44 T 11-10-2018 BED32_11680 320213786a907bc79c1cb1d59b19ea87 170 Pfam PF00959 Phage lysozyme 56 162 1.9E-27 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 BED32_11680 320213786a907bc79c1cb1d59b19ea87 170 SUPERFAMILY SSF53955 12 169 2.66E-56 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_11680 320213786a907bc79c1cb1d59b19ea87 170 Gene3D G3DSA:1.10.530.40 29 170 3.6E-44 T 11-10-2018 BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 Gene3D G3DSA:3.40.50.300 219 388 1.7E-48 T 11-10-2018 BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 Pfam PF00270 DEAD/DEAH box helicase 28 196 1.9E-46 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 SMART SM00487 23 225 4.7E-58 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 155 163 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 Pfam PF00271 Helicase conserved C-terminal domain 236 343 5.4E-26 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 SMART SM00490 262 343 1.8E-27 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 SUPERFAMILY SSF52540 35 354 2.91E-66 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 4 427 49.403 T 11-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 BED32_16295 0a0877c7232c5988c326abda7ffde4d5 441 Gene3D G3DSA:3.40.50.300 1 212 2.0E-71 T 11-10-2018 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 231 1.1E-71 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 225 7.6E-57 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 Gene3D G3DSA:3.40.50.1860 105 216 2.2E-89 T 11-10-2018 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 Gene3D G3DSA:3.40.50.1860 5 225 2.2E-89 T 11-10-2018 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 SUPERFAMILY SSF53681 119 230 3.27E-32 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_14870 f88926890b17cf449ae927d6bc1d81d1 232 SUPERFAMILY SSF53681 2 117 5.89E-36 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_05405 1b1aa3babbd505a95f8156601fed4674 120 PIRSF PIRSF001007 1 120 1.8E-48 T 11-10-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 BED32_05405 1b1aa3babbd505a95f8156601fed4674 120 Pfam PF05866 Endodeoxyribonuclease RusA 9 114 9.1E-21 T 11-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 BED32_05405 1b1aa3babbd505a95f8156601fed4674 120 SUPERFAMILY SSF103084 1 117 1.7E-31 T 11-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 BED32_05405 1b1aa3babbd505a95f8156601fed4674 120 Gene3D G3DSA:3.30.1330.70 1 120 9.7E-46 T 11-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 BED32_06640 1b1aa3babbd505a95f8156601fed4674 120 PIRSF PIRSF001007 1 120 1.8E-48 T 11-10-2018 IPR016281 Crossover junction endodeoxyribonuclease, RusA GO:0008821 BED32_06640 1b1aa3babbd505a95f8156601fed4674 120 Pfam PF05866 Endodeoxyribonuclease RusA 9 114 9.1E-21 T 11-10-2018 IPR008822 Holliday junction resolvase RusA-like GO:0000287|GO:0006281|GO:0006310 BED32_06640 1b1aa3babbd505a95f8156601fed4674 120 SUPERFAMILY SSF103084 1 117 1.7E-31 T 11-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 BED32_06640 1b1aa3babbd505a95f8156601fed4674 120 Gene3D G3DSA:3.30.1330.70 1 120 9.7E-46 T 11-10-2018 IPR036614 Holliday junction resolvase RusA-like superfamily GO:0000287|GO:0006281|GO:0006310 BED32_15540 b89e99b16babea17b41d7aad2099433b 157 Pfam PF12688 Tetratrico peptide repeat 35 153 3.3E-13 T 11-10-2018 BED32_15540 b89e99b16babea17b41d7aad2099433b 157 Gene3D G3DSA:1.25.40.10 1 154 1.3E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15540 b89e99b16babea17b41d7aad2099433b 157 SUPERFAMILY SSF48452 9 150 1.05E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 SUPERFAMILY SSF52540 197 375 1.26E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 8.6E-29 T 11-10-2018 IPR025121 GTPase HflX, N-terminal BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Gene3D G3DSA:3.40.50.11060 17 138 9.6E-36 T 11-10-2018 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Hamap MF_00900 GTPase HflX [hflX]. 27 390 47.303 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 1.8E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 1.8E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 1.8E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 2.2E-28 T 11-10-2018 IPR032305 GTP-binding protein, middle domain BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 SUPERFAMILY SSF54980 366 422 5.75E-14 T 11-10-2018 IPR035647 EF-G domain III/V-like BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 PIRSF PIRSF006809 4 422 9.8E-146 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Pfam PF01926 50S ribosome-binding GTPase 200 318 7.5E-20 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 1.9E-150 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 BED32_19215 4152ea0aa892b47f7d95e3274c7f5767 433 Gene3D G3DSA:3.40.50.300 197 365 9.3E-38 T 11-10-2018 BED32_13600 d6758be452356395971d4302c86b32ac 261 Pfam PF13847 Methyltransferase domain 44 147 4.5E-19 T 11-10-2018 IPR025714 Methyltransferase domain BED32_13600 d6758be452356395971d4302c86b32ac 261 SUPERFAMILY SSF53335 4 255 8.75E-37 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_13600 d6758be452356395971d4302c86b32ac 261 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 2 255 41.765 T 11-10-2018 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 BED32_13600 d6758be452356395971d4302c86b32ac 261 Gene3D G3DSA:3.40.50.150 8 261 1.8E-69 T 11-10-2018 BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 SUPERFAMILY SSF46689 11 85 2.69E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 Pfam PF01380 SIS domain 142 268 4.6E-24 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 Gene3D G3DSA:3.40.50.10490 111 277 5.6E-36 T 11-10-2018 BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 Pfam PF01418 Helix-turn-helix domain, rpiR family 10 80 7.1E-13 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 Gene3D G3DSA:1.10.10.10 6 83 5.0E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01325 1a1c78db34644c156f70fd6ddab71f09 277 SUPERFAMILY SSF53697 117 270 6.27E-27 T 11-10-2018 BED32_01865 e8564acc03e332458277640c50f630f9 157 Pfam PF00210 Ferritin-like domain 8 143 8.3E-39 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PIRSF PIRSF002560 1 157 4.6E-71 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 156 8.2E-80 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 107 127 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 3 22 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 44 64 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 65 85 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 86 106 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 23 43 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 PRINTS PR00601 Bacterioferritin signature 128 149 5.3E-75 T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 BED32_01865 e8564acc03e332458277640c50f630f9 157 SUPERFAMILY SSF47240 1 154 3.42E-53 T 11-10-2018 IPR009078 Ferritin-like superfamily BED32_01865 e8564acc03e332458277640c50f630f9 157 Gene3D G3DSA:1.20.1260.10 1 157 3.9E-71 T 11-10-2018 IPR012347 Ferritin-like BED32_14845 71ecae485608e3aec2a40f3d4f0beee9 104 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 94 1.5E-19 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BED32_14845 71ecae485608e3aec2a40f3d4f0beee9 104 SUPERFAMILY SSF52794 1 101 2.22E-35 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_14845 71ecae485608e3aec2a40f3d4f0beee9 104 Gene3D G3DSA:3.40.50.2300 1 103 3.0E-34 T 11-10-2018 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 Gene3D G3DSA:3.30.420.370 149 214 2.3E-48 T 11-10-2018 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 PIRSF PIRSF015761 20 270 2.4E-10 T 11-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 PIRSF PIRSF015761 326 387 320.0 T 11-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 Pfam PF05134 Type II secretion system (T2SS), protein L 14 236 4.5E-39 T 11-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 SUPERFAMILY SSF53067 153 236 1.55E-13 T 11-10-2018 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 SUPERFAMILY SSF53067 11 151 1.28E-25 T 11-10-2018 BED32_17180 ba9fe398ee12afa0e0a221ef6ba885ab 398 Gene3D G3DSA:3.30.420.380 13 236 2.3E-48 T 11-10-2018 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 Pfam PF13464 Domain of unknown function (DUF4115) 261 335 8.2E-25 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 SMART SM00530 18 79 1.4E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 Pfam PF13413 Helix-turn-helix domain 18 79 2.7E-15 T 11-10-2018 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 Gene3D G3DSA:1.10.260.40 4 111 2.7E-20 T 11-10-2018 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 SUPERFAMILY SSF47413 12 80 3.66E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_15990 2e36b1bed10a2291728432c0d7279e6b 338 Hamap MF_02017 Cytoskeleton protein RodZ [rodZ]. 1 338 44.484 T 11-10-2018 IPR023690 Cytoskeleton protein RodZ GO:0008360|GO:0016021 BED32_01570 f03abe47db9e523765bb492ee217ad29 135 SMART SM00363 11 72 5.8E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01570 f03abe47db9e523765bb492ee217ad29 135 PIRSF PIRSF016821 8 135 2.2E-42 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 BED32_01570 f03abe47db9e523765bb492ee217ad29 135 SUPERFAMILY SSF55174 10 106 4.97E-31 T 11-10-2018 BED32_01570 f03abe47db9e523765bb492ee217ad29 135 Pfam PF01479 S4 domain 11 57 1.4E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01570 f03abe47db9e523765bb492ee217ad29 135 Gene3D G3DSA:3.10.290.10 3 110 6.4E-39 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 BED32_19605 597a510dd7e6bb47e536ad2cbfbdd137 91 Pfam PF06287 Protein of unknown function (DUF1039) 17 81 2.1E-30 T 11-10-2018 IPR010437 Type III secretion system SsaH BED32_19605 597a510dd7e6bb47e536ad2cbfbdd137 91 TIGRFAM TIGR02498 type_III_ssaH: type III secretion system protein, SsaH family 5 81 1.9E-31 T 11-10-2018 IPR010437 Type III secretion system SsaH BED32_11395 a9d888571ae312095323d858f9b096dc 423 Pfam PF07690 Major Facilitator Superfamily 48 346 4.7E-30 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_11395 a9d888571ae312095323d858f9b096dc 423 Gene3D G3DSA:1.20.1250.20 239 423 5.9E-10 T 11-10-2018 BED32_11395 a9d888571ae312095323d858f9b096dc 423 Gene3D G3DSA:1.20.1250.20 40 238 2.5E-30 T 11-10-2018 BED32_11395 a9d888571ae312095323d858f9b096dc 423 ProSitePatterns PS00216 Sugar transport proteins signature 1. 97 113 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BED32_11395 a9d888571ae312095323d858f9b096dc 423 SUPERFAMILY SSF103473 32 416 3.66E-56 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_03280 744ac07fb438f9ace0bb9dcccfabacc8 333 Gene3D G3DSA:3.30.360.10 135 325 1.3E-50 T 11-10-2018 BED32_03280 744ac07fb438f9ace0bb9dcccfabacc8 333 SUPERFAMILY SSF55347 126 291 3.27E-22 T 11-10-2018 BED32_03280 744ac07fb438f9ace0bb9dcccfabacc8 333 SUPERFAMILY SSF51735 2 152 8.36E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_03280 744ac07fb438f9ace0bb9dcccfabacc8 333 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 118 8.5E-25 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BED32_03280 744ac07fb438f9ace0bb9dcccfabacc8 333 Gene3D G3DSA:3.40.50.720 1 134 7.0E-35 T 11-10-2018 BED32_16835 99e570904cf27c65ba55536d6fc88509 173 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 8 146 4.4E-60 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_16835 99e570904cf27c65ba55536d6fc88509 173 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 8 149 37.239 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_16835 99e570904cf27c65ba55536d6fc88509 173 Pfam PF07977 FabA-like domain 17 141 2.0E-40 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_16835 99e570904cf27c65ba55536d6fc88509 173 Gene3D G3DSA:3.10.129.10 5 148 3.5E-68 T 11-10-2018 BED32_16835 99e570904cf27c65ba55536d6fc88509 173 SUPERFAMILY SSF54637 10 151 9.64E-51 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_12085 97d382ade5d45e60d517f110304f0016 333 Pfam PF00005 ABC transporter 40 191 2.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12085 97d382ade5d45e60d517f110304f0016 333 SUPERFAMILY SSF52540 22 263 2.18E-74 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12085 97d382ade5d45e60d517f110304f0016 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 310 1.0E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_12085 97d382ade5d45e60d517f110304f0016 333 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_12085 97d382ade5d45e60d517f110304f0016 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 2.5E-29 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_12085 97d382ade5d45e60d517f110304f0016 333 Gene3D G3DSA:3.40.50.300 8 332 7.9E-98 T 11-10-2018 BED32_12085 97d382ade5d45e60d517f110304f0016 333 SMART SM00382 48 241 4.0E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14100 793abcd122369c56ae783e25d1ddb923 140 Gene3D G3DSA:3.90.79.10 1 132 1.3E-36 T 11-10-2018 BED32_14100 793abcd122369c56ae783e25d1ddb923 140 SUPERFAMILY SSF55811 4 133 1.29E-33 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_14100 793abcd122369c56ae783e25d1ddb923 140 PRINTS PR00502 NUDIX hydrolase family signature 31 45 4.8E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_14100 793abcd122369c56ae783e25d1ddb923 140 PRINTS PR00502 NUDIX hydrolase family signature 45 60 4.8E-9 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_14100 793abcd122369c56ae783e25d1ddb923 140 Pfam PF00293 NUDIX domain 5 127 4.3E-27 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_14100 793abcd122369c56ae783e25d1ddb923 140 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_08375 f3585210bf1bea92f4401b758535597d 179 Gene3D G3DSA:1.25.40.10 79 179 1.4E-29 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_08375 f3585210bf1bea92f4401b758535597d 179 SUPERFAMILY SSF48452 2 175 9.86E-64 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_08375 f3585210bf1bea92f4401b758535597d 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 176 1.4E-58 T 11-10-2018 IPR010323 Protein of unknown function DUF924 BED32_08375 f3585210bf1bea92f4401b758535597d 179 Gene3D G3DSA:1.20.58.320 1 78 7.1E-26 T 11-10-2018 BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 Pfam PF03796 DnaB-like helicase C terminal domain 203 459 1.8E-111 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 SMART SM00382 220 426 3.6E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 125 2.2E-36 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 SUPERFAMILY SSF48024 22 133 4.18E-38 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 Gene3D G3DSA:3.40.50.300 181 460 1.3E-105 T 11-10-2018 BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 SUPERFAMILY SSF52540 201 452 9.86E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 Gene3D G3DSA:1.10.860.10 17 180 1.6E-54 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BED32_02275 3b6260b4cbb6007b70efa3e82a22789f 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 461 4.7E-175 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 BED32_06730 3c985186aa097cdad12ef9e89b3db42e 133 Pfam PF02924 Bacteriophage lambda head decoration protein D 29 115 5.4E-17 T 11-10-2018 IPR004195 Head decoration protein D BED32_08160 e472598b20603e7404c8b853feaff386 232 SUPERFAMILY SSF52540 2 219 1.39E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08160 e472598b20603e7404c8b853feaff386 232 Gene3D G3DSA:3.40.50.300 1 226 4.4E-59 T 11-10-2018 BED32_08160 e472598b20603e7404c8b853feaff386 232 SMART SM00382 26 199 9.7E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08160 e472598b20603e7404c8b853feaff386 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 5.1E-105 T 11-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE BED32_08160 e472598b20603e7404c8b853feaff386 232 Pfam PF00005 ABC transporter 17 161 1.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_11125 5fc8024a0e72f5899c34084c45c9d205 167 Gene3D G3DSA:3.40.30.10 1 167 1.5E-49 T 11-10-2018 BED32_11125 5fc8024a0e72f5899c34084c45c9d205 167 Pfam PF08534 Redoxin 20 163 4.5E-28 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BED32_11125 5fc8024a0e72f5899c34084c45c9d205 167 Hamap MF_00269 Thiol peroxidase [tpx]. 4 167 39.958 T 11-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 BED32_11125 5fc8024a0e72f5899c34084c45c9d205 167 SUPERFAMILY SSF52833 4 164 2.66E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_11125 5fc8024a0e72f5899c34084c45c9d205 167 ProSitePatterns PS01265 Tpx family signature. 84 95 - T 11-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 BED32_20120 795a23a8472c582dd5745cc7c28908e3 227 Gene3D G3DSA:2.60.40.10 23 152 2.5E-28 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_20120 795a23a8472c582dd5745cc7c28908e3 227 SUPERFAMILY SSF49354 20 129 1.2E-7 T 11-10-2018 IPR008962 PapD-like superfamily BED32_20120 795a23a8472c582dd5745cc7c28908e3 227 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 24 133 8.2E-5 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 Pfam PF01063 Amino-transferase class IV 24 247 1.4E-47 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 SUPERFAMILY SSF56752 1 251 3.4E-65 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 Gene3D G3DSA:3.30.470.10 1 108 4.9E-28 T 11-10-2018 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 Gene3D G3DSA:3.20.10.10 121 271 4.0E-47 T 11-10-2018 BED32_13155 105dc639bb02528c0fa5a06ac0a8a7bd 274 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 268 1.3E-109 T 11-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 BED32_20965 3a6e817097d6c8751580fd1d15a39f85 321 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 3 319 1.6E-125 T 11-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 BED32_20965 3a6e817097d6c8751580fd1d15a39f85 321 Gene3D G3DSA:3.40.50.2000 164 320 7.7E-56 T 11-10-2018 BED32_20965 3a6e817097d6c8751580fd1d15a39f85 321 Gene3D G3DSA:3.40.50.2000 1 163 6.9E-62 T 11-10-2018 BED32_20965 3a6e817097d6c8751580fd1d15a39f85 321 SUPERFAMILY SSF53756 1 320 2.28E-76 T 11-10-2018 BED32_20965 3a6e817097d6c8751580fd1d15a39f85 321 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 78 312 1.2E-71 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 BED32_05620 5265ce33b9902b81afe31996b2b37354 399 Hamap MF_01683 Methylthioribose kinase [mtnK]. 1 399 212.49 T 11-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BED32_05620 5265ce33b9902b81afe31996b2b37354 399 TIGRFAM TIGR01767 MTRK: S-methyl-5-thioribose kinase 33 395 1.1E-159 T 11-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BED32_05620 5265ce33b9902b81afe31996b2b37354 399 SUPERFAMILY SSF56112 1 397 4.23E-90 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_05620 5265ce33b9902b81afe31996b2b37354 399 Gene3D G3DSA:3.90.1200.10 116 398 2.1E-101 T 11-10-2018 BED32_05620 5265ce33b9902b81afe31996b2b37354 399 Gene3D G3DSA:3.30.200.20 1 115 3.0E-38 T 11-10-2018 BED32_05620 5265ce33b9902b81afe31996b2b37354 399 Pfam PF01636 Phosphotransferase enzyme family 33 263 1.6E-13 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase BED32_05620 5265ce33b9902b81afe31996b2b37354 399 PIRSF PIRSF031134 1 399 1.0E-164 T 11-10-2018 IPR009212 Methylthioribose kinase GO:0009086|GO:0046522 KEGG: 00270+2.7.1.100|MetaCyc: PWY-6754 BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 SMART SM00257 409 454 8.2E-8 T 11-10-2018 IPR018392 LysM domain BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 SMART SM00257 355 399 6.3E-13 T 11-10-2018 IPR018392 LysM domain BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Gene3D G3DSA:3.10.350.10 351 406 3.8E-15 T 11-10-2018 IPR036779 LysM domain superfamily BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 SUPERFAMILY SSF54106 407 454 2.22E-9 T 11-10-2018 BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 130 158 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Pfam PF01464 Transglycosylase SLT domain 115 223 6.3E-28 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Gene3D G3DSA:1.10.530.10 106 259 3.8E-32 T 11-10-2018 BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Pfam PF01476 LysM domain 410 453 9.6E-9 T 11-10-2018 IPR018392 LysM domain BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Pfam PF01476 LysM domain 356 397 7.4E-13 T 11-10-2018 IPR018392 LysM domain BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 SUPERFAMILY SSF53955 108 260 9.38E-41 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 Gene3D G3DSA:3.10.350.10 407 456 1.8E-12 T 11-10-2018 IPR036779 LysM domain superfamily BED32_16660 e848f9a6cd38fa475757c7b9510a8d7b 463 SUPERFAMILY SSF54106 354 398 3.4E-10 T 11-10-2018 BED32_20640 3014ba01b9d9e14679eabbd03ea6471a 409 Gene3D G3DSA:1.20.1720.10 19 402 2.1E-64 T 11-10-2018 BED32_20640 3014ba01b9d9e14679eabbd03ea6471a 409 SUPERFAMILY SSF103473 7 401 5.89E-52 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_20640 3014ba01b9d9e14679eabbd03ea6471a 409 Pfam PF07690 Major Facilitator Superfamily 25 364 4.4E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_14165 e13df43e3da68dc0cb6f1dc3cc88b22a 194 Gene3D G3DSA:3.90.1720.10 65 193 1.3E-44 T 11-10-2018 BED32_14165 e13df43e3da68dc0cb6f1dc3cc88b22a 194 Pfam PF00877 NlpC/P60 family 82 185 1.6E-31 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BED32_14165 e13df43e3da68dc0cb6f1dc3cc88b22a 194 SUPERFAMILY SSF54001 70 188 3.27E-39 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 Gene3D G3DSA:1.20.58.340 280 337 2.2E-11 T 11-10-2018 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 SUPERFAMILY SSF143865 20 269 7.59E-53 T 11-10-2018 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 Gene3D G3DSA:1.20.58.340 150 272 7.6E-42 T 11-10-2018 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 Gene3D G3DSA:3.30.460.20 10 149 4.1E-44 T 11-10-2018 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 Pfam PF01544 CorA-like Mg2+ transporter protein 49 333 6.7E-67 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 SUPERFAMILY SSF144083 273 334 1.7E-13 T 11-10-2018 BED32_11145 377f7e7a387b6678c5c674206a9bc17c 337 Hamap MF_01565 Zinc transport protein ZntB [zntB]. 11 337 68.695 T 11-10-2018 IPR023714 Zinc transport protein ZntB GO:0005385|GO:0005886|GO:0071577 BED32_00565 30b48c5fcad176b2fd9dff936aaa58d4 256 Hamap MF_02039 Cell division protein FtsN [ftsN]. 1 256 34.237 T 11-10-2018 IPR011930 Cell division protein FtsN GO:0005515 BED32_00565 30b48c5fcad176b2fd9dff936aaa58d4 256 Pfam PF05036 Sporulation related domain 182 250 6.1E-20 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 BED32_00565 30b48c5fcad176b2fd9dff936aaa58d4 256 Gene3D G3DSA:3.30.70.1070 177 256 6.0E-31 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_00565 30b48c5fcad176b2fd9dff936aaa58d4 256 SUPERFAMILY SSF110997 182 251 2.09E-21 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_00565 30b48c5fcad176b2fd9dff936aaa58d4 256 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 2 250 2.1E-73 T 11-10-2018 IPR011930 Cell division protein FtsN GO:0005515 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 373 3.6E-178 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 Pfam PF07687 Peptidase dimerisation domain 175 282 4.5E-24 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 375 52.325 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 Gene3D G3DSA:3.40.630.10 8 360 7.8E-126 T 11-10-2018 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 Gene3D G3DSA:3.30.70.360 179 292 7.8E-126 T 11-10-2018 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 61 70 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 SUPERFAMILY SSF53187 5 373 3.93E-64 T 11-10-2018 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 Pfam PF01546 Peptidase family M20/M25/M40 62 371 7.7E-43 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 BED32_15550 d29af643e6884200d9d6e5c6256e9de9 375 SUPERFAMILY SSF55031 179 286 7.18E-28 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain BED32_11665 0eb4e0c347656a8903dce8eedaed612c 440 Gene3D G3DSA:3.40.50.300 3 187 9.1E-27 T 11-10-2018 BED32_11665 0eb4e0c347656a8903dce8eedaed612c 440 Pfam PF03237 Terminase-like family 31 238 4.5E-7 T 11-10-2018 IPR004921 Terminase large subunit, T4likevirus-type BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 Gene3D G3DSA:3.40.50.1390 2 169 2.1E-29 T 11-10-2018 BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 SMART SM00857 3 159 9.3E-36 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 Pfam PF00239 Resolvase, N terminal domain 5 158 4.4E-27 T 11-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 ProSitePatterns PS00398 Site-specific recombinases signature 2. 62 74 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_21960 1e470e1a7690ab3f46518c210f7396e5 212 SUPERFAMILY SSF53041 1 158 3.4E-29 T 11-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 BED32_19365 826d6fd1bfd561cb90f6411a48574c35 433 PIRSF PIRSF004539 1 433 5.8E-174 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_19365 826d6fd1bfd561cb90f6411a48574c35 433 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 433 1.2E-195 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_19365 826d6fd1bfd561cb90f6411a48574c35 433 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 365 1.7E-141 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 346 1.8E-135 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 1.0E-140 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 SUPERFAMILY SSF51726 2 353 3.66E-119 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.249 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 Gene3D G3DSA:3.20.20.210 1 354 4.0E-161 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 BED32_19780 04ddba842a7658fe270dca9c2757127b 355 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 BED32_12645 3df7fb66430c5021e7ff7e941ccf3072 118 ProDom PD077599 YEBF LIPOPROTEIN EXPORTED PERIPLASMIC PRECURSOR SIGNAL SIMILAR PALMITATE MEMBRANE ESCHERICHIA 25 114 2.0E-39 T 11-10-2018 IPR025603 YebF/Colicin-M immunity protein BED32_12645 3df7fb66430c5021e7ff7e941ccf3072 118 Gene3D G3DSA:3.10.450.300 21 116 4.8E-39 T 11-10-2018 IPR038703 YebF/Cmi superfamily BED32_12645 3df7fb66430c5021e7ff7e941ccf3072 118 Pfam PF13995 YebF-like protein 27 114 2.1E-39 T 11-10-2018 IPR025603 YebF/Colicin-M immunity protein BED32_14385 78af3cec6633d901b0c3dfc7cfdde8ae 384 Gene3D G3DSA:1.20.1250.20 201 382 6.3E-20 T 11-10-2018 BED32_14385 78af3cec6633d901b0c3dfc7cfdde8ae 384 Gene3D G3DSA:1.20.1250.20 18 189 2.9E-14 T 11-10-2018 BED32_14385 78af3cec6633d901b0c3dfc7cfdde8ae 384 Pfam PF07690 Major Facilitator Superfamily 22 323 4.5E-15 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_14385 78af3cec6633d901b0c3dfc7cfdde8ae 384 SUPERFAMILY SSF103473 22 377 8.5E-35 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 9 157 2.0E-44 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 Pfam PF01923 Cobalamin adenosyltransferase 3 166 1.6E-51 T 11-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 Gene3D G3DSA:1.20.1200.10 12 191 8.6E-50 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 SUPERFAMILY SSF89028 1 176 4.9E-51 T 11-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 Pfam PF03928 Haem-degrading 207 330 5.8E-26 T 11-10-2018 IPR005624 Haem-degrading BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 Gene3D G3DSA:3.30.450.150 194 337 6.6E-46 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 4 177 1.5E-46 T 11-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 PIRSF PIRSF036411 1 335 3.2E-103 T 11-10-2018 IPR009221 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, bifunctional PduO BED32_08875 700934b34d9abc38a0b15a02d15f91fd 338 SUPERFAMILY SSF143744 203 334 1.96E-36 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 SUPERFAMILY SSF159871 5 94 2.49E-22 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 SUPERFAMILY SSF159871 109 179 2.88E-17 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Gene3D G3DSA:3.30.1660.10 22 91 9.8E-26 T 11-10-2018 IPR025543 Dodecin-like BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Gene3D G3DSA:3.30.1660.10 245 317 1.5E-29 T 11-10-2018 IPR025543 Dodecin-like BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Gene3D G3DSA:3.30.1660.10 107 176 5.1E-23 T 11-10-2018 IPR025543 Dodecin-like BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 PIRSF PIRSF014774 1 317 7.4E-185 T 11-10-2018 IPR025539 YdgH protein BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Pfam PF07338 Protein of unknown function (DUF1471) 261 317 3.4E-20 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Pfam PF07338 Protein of unknown function (DUF1471) 36 91 5.0E-20 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 Pfam PF07338 Protein of unknown function (DUF1471) 120 176 1.5E-19 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_11255 9059b95edcd7e7920f5b70f4bf1830c8 317 SUPERFAMILY SSF159871 241 317 1.26E-18 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_01090 3136bf07cff2a6780d5d19d4f6acbce4 66 SUPERFAMILY SSF55331 2 64 2.4E-23 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily BED32_01090 3136bf07cff2a6780d5d19d4f6acbce4 66 Pfam PF01361 Tautomerase enzyme 2 61 5.5E-25 T 11-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 BED32_01090 3136bf07cff2a6780d5d19d4f6acbce4 66 Gene3D G3DSA:3.30.429.10 2 65 5.7E-27 T 11-10-2018 IPR014347 Tautomerase/MIF superfamily BED32_01090 3136bf07cff2a6780d5d19d4f6acbce4 66 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 64 7.7E-30 T 11-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 7 276 32.371 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 Gene3D G3DSA:3.30.70.890 166 284 7.0E-27 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 Pfam PF00288 GHMP kinases N terminal domain 92 149 9.6E-12 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 6 281 2.1E-107 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 PIRSF PIRSF010376 5 284 3.3E-84 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 Pfam PF08544 GHMP kinases C terminal 207 261 7.1E-6 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 SUPERFAMILY SSF54211 7 162 3.04E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 Gene3D G3DSA:3.30.230.10 6 164 2.6E-55 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_09800 27d7426d8dba10b48d68ec183520eaa4 293 SUPERFAMILY SSF55060 168 282 4.03E-36 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_19585 012e66a2abdc979154d7ec312624f53d 205 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 17 193 5.4E-28 T 11-10-2018 IPR012842 Type III secretion system HrpE/YscL BED32_17990 9a86d56f62e5166944e9e45cd585d2e8 393 Pfam PF07690 Major Facilitator Superfamily 19 346 5.1E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_17990 9a86d56f62e5166944e9e45cd585d2e8 393 Gene3D G3DSA:1.20.1250.20 207 392 1.5E-18 T 11-10-2018 BED32_17990 9a86d56f62e5166944e9e45cd585d2e8 393 Gene3D G3DSA:1.20.1250.20 11 202 3.6E-20 T 11-10-2018 BED32_17990 9a86d56f62e5166944e9e45cd585d2e8 393 SUPERFAMILY SSF103473 10 391 1.28E-47 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17990 9a86d56f62e5166944e9e45cd585d2e8 393 TIGRFAM TIGR00899 2A0120: sugar efflux transporter 17 391 1.7E-159 T 11-10-2018 IPR004750 Sugar efflux GO:0005351|GO:0008643|GO:0016021 BED32_09875 97922393d9c635e6968723bcdf328c91 186 PIRSF PIRSF004690 1 186 8.1E-63 T 11-10-2018 IPR026269 Tat proofreading chaperone DmsD-type BED32_09875 97922393d9c635e6968723bcdf328c91 186 SUPERFAMILY SSF89155 2 180 2.22E-46 T 11-10-2018 IPR036411 TorD-like superfamily BED32_09875 97922393d9c635e6968723bcdf328c91 186 Pfam PF02613 Nitrate reductase delta subunit 47 147 1.5E-14 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone BED32_09875 97922393d9c635e6968723bcdf328c91 186 Gene3D G3DSA:1.10.3480.10 1 185 3.6E-32 T 11-10-2018 BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 Pfam PF00675 Insulinase (Peptidase family M16) 51 183 7.5E-11 T 11-10-2018 IPR011765 Peptidase M16, N-terminal BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 SUPERFAMILY SSF63411 29 240 1.75E-26 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 Pfam PF05193 Peptidase M16 inactive domain 202 376 2.8E-15 T 11-10-2018 IPR007863 Peptidase M16, C-terminal BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 Gene3D G3DSA:3.30.830.10 257 472 6.9E-103 T 11-10-2018 BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 SUPERFAMILY SSF63411 342 456 1.67E-5 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 BED32_01080 0a7aa548dc0205fa7036bfbec5e0a3e4 496 Gene3D G3DSA:3.30.830.10 8 256 1.3E-50 T 11-10-2018 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 SUPERFAMILY SSF56712 1 608 4.71E-187 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 SMART SM00493 1 124 9.4E-32 T 11-10-2018 IPR006171 TOPRIM domain BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 3.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 323 332 3.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 402 418 3.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 3.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 521 535 3.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Gene3D G3DSA:1.10.290.10 289 416 1.5E-174 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Gene3D G3DSA:2.70.20.10 217 488 1.5E-174 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Gene3D G3DSA:3.40.50.140 1 156 3.8E-62 T 11-10-2018 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 332 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Gene3D G3DSA:1.10.460.10 162 602 1.5E-174 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Pfam PF01131 DNA topoisomerase 158 593 1.7E-109 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 641 65.546 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 Pfam PF01751 Toprim domain 3 135 5.7E-18 T 11-10-2018 IPR006171 TOPRIM domain BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 SMART SM00436 128 223 9.5E-36 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 SMART SM00437 280 558 3.6E-104 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 BED32_12200 63bc7ef1c011e41b6e4e91b39f2fbd69 641 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 634 6.0E-277 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 BED32_02585 86e3d9676769f70b4d3994993c51161a 88 Pfam PF01337 Barstar (barnase inhibitor) 6 80 8.7E-12 T 11-10-2018 IPR000468 Barstar (barnase inhibitor) BED32_02585 86e3d9676769f70b4d3994993c51161a 88 SUPERFAMILY SSF52038 1 87 5.49E-29 T 11-10-2018 IPR035905 Barstar-like superfamily BED32_02585 86e3d9676769f70b4d3994993c51161a 88 Gene3D G3DSA:3.30.370.10 1 88 1.4E-35 T 11-10-2018 IPR035905 Barstar-like superfamily BED32_20740 213f0c888766fdb36e212e9b8d7b53be 239 Pfam PF11254 Protein of unknown function (DUF3053) 17 234 7.7E-93 T 11-10-2018 IPR021413 Protein of unknown function DUF3053 BED32_08620 055e1099234739582f2cd1458916e293 478 Pfam PF05598 Transposase domain (DUF772) 52 127 8.5E-22 T 11-10-2018 IPR008490 Transposase InsH, N-terminal BED32_08620 055e1099234739582f2cd1458916e293 478 Pfam PF13751 Transposase DDE domain 328 446 1.3E-26 T 11-10-2018 IPR025668 Transposase DDE domain BED32_20565 221cb8a69e695003d52e1ed9b1fbc02b 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 5.7E-19 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA BED32_20565 221cb8a69e695003d52e1ed9b1fbc02b 66 SUPERFAMILY SSF46955 6 61 3.48E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_20565 221cb8a69e695003d52e1ed9b1fbc02b 66 Gene3D G3DSA:1.10.238.160 5 63 1.5E-6 T 11-10-2018 BED32_07245 221cb8a69e695003d52e1ed9b1fbc02b 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 5.7E-19 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA BED32_07245 221cb8a69e695003d52e1ed9b1fbc02b 66 SUPERFAMILY SSF46955 6 61 3.48E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_07245 221cb8a69e695003d52e1ed9b1fbc02b 66 Gene3D G3DSA:1.10.238.160 5 63 1.5E-6 T 11-10-2018 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Gene3D G3DSA:3.30.870.10 111 306 1.3E-35 T 11-10-2018 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 SMART SM00155 219 246 0.001 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 SMART SM00155 399 426 7.3E-5 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 59 2.3E-7 T 11-10-2018 IPR027379 Cardiolipin synthase N-terminal BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 486 52.189 T 11-10-2018 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 6 486 3.1E-206 T 11-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Pfam PF13091 PLD-like domain 135 244 3.3E-11 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Pfam PF13091 PLD-like domain 331 448 3.3E-23 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 SUPERFAMILY SSF56024 66 315 8.9E-48 T 11-10-2018 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 SUPERFAMILY SSF56024 274 473 2.92E-49 T 11-10-2018 BED32_12075 7f3ba8b72bf2d7cb1a8d2b3ea19d8ef0 486 Gene3D G3DSA:3.30.870.10 316 458 1.2E-25 T 11-10-2018 BED32_03510 727b679565b236140e1130caab70de61 275 SUPERFAMILY SSF56300 16 273 6.38E-61 T 11-10-2018 BED32_03510 727b679565b236140e1130caab70de61 275 Gene3D G3DSA:3.60.21.10 3 272 3.2E-70 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_03510 727b679565b236140e1130caab70de61 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 15 261 40.004 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 BED32_03510 727b679565b236140e1130caab70de61 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 2.0E-24 T 11-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 BED32_03510 727b679565b236140e1130caab70de61 275 Pfam PF00149 Calcineurin-like phosphoesterase 16 207 4.3E-20 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_18390 1fcaf9ac46675b6c540c147c283415f9 145 SUPERFAMILY SSF102220 27 135 6.93E-35 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18390 1fcaf9ac46675b6c540c147c283415f9 145 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 34 125 1.0E-38 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18390 1fcaf9ac46675b6c540c147c283415f9 145 Gene3D G3DSA:3.40.50.10220 33 137 8.5E-37 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18390 1fcaf9ac46675b6c540c147c283415f9 145 Pfam PF03603 DNA polymerase III psi subunit 3 127 2.7E-46 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_18390 1fcaf9ac46675b6c540c147c283415f9 145 PIRSF PIRSF029225 2 131 1.1E-50 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_11755 33864621c23c5fe50f1783a5174db909 97 Pfam PF05269 Bacteriophage CII protein 1 90 1.4E-36 T 11-10-2018 IPR007933 Transcription activator CII GO:0003677|GO:0006355 BED32_11755 33864621c23c5fe50f1783a5174db909 97 SUPERFAMILY SSF47413 6 78 8.44E-23 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_11755 33864621c23c5fe50f1783a5174db909 97 Gene3D G3DSA:1.10.260.40 2 82 4.8E-36 T 11-10-2018 BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 SUPERFAMILY SSF161093 163 332 3.4E-45 T 11-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 Pfam PF01769 Divalent cation transporter 206 327 4.0E-26 T 11-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 SMART SM00116 92 139 0.0032 T 11-10-2018 IPR000644 CBS domain BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 Pfam PF00571 CBS domain 87 138 2.4E-4 T 11-10-2018 IPR000644 CBS domain BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 SUPERFAMILY SSF54631 27 159 4.42E-20 T 11-10-2018 BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 Gene3D G3DSA:3.10.580.10 24 144 1.1E-18 T 11-10-2018 BED32_08080 738f7943055ec7fabc4b924ebc5fbc7d 338 Gene3D G3DSA:1.10.357.20 158 334 3.0E-50 T 11-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain BED32_06180 e170c44f73704e57c10cc6de67d4d054 67 Pfam PF05321 Haemolysin expression modulating protein 8 64 4.1E-33 T 11-10-2018 IPR007985 Haemolysin expression modulating, HHA BED32_06180 e170c44f73704e57c10cc6de67d4d054 67 SUPERFAMILY SSF68989 1 67 1.22E-30 T 11-10-2018 IPR036666 HHA superfamily BED32_06180 e170c44f73704e57c10cc6de67d4d054 67 Gene3D G3DSA:1.20.1280.40 1 67 3.7E-37 T 11-10-2018 IPR036666 HHA superfamily BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 Pfam PF00072 Response regulator receiver domain 6 117 2.3E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 Pfam PF12431 Transcriptional regulator 133 161 7.9E-8 T 11-10-2018 IPR028141 Transcriptional regulator BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 Gene3D G3DSA:3.40.50.2300 4 150 1.5E-27 T 11-10-2018 BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 SMART SM00448 4 117 1.9E-26 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 PIRSF PIRSF006171 2 227 1.1E-74 T 11-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 BED32_09215 fb224e6ea4453ea74bc4db83a1c66da0 228 SUPERFAMILY SSF52172 4 157 1.99E-32 T 11-10-2018 IPR011006 CheY-like superfamily BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 SMART SM00448 3 114 2.8E-30 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 171 7.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 183 7.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 141 155 7.2E-13 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 Pfam PF00072 Response regulator receiver domain 5 114 1.2E-25 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 ProSitePatterns PS00622 LuxR-type HTH domain signature. 155 182 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 Gene3D G3DSA:1.10.10.10 132 196 2.0E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 Gene3D G3DSA:3.40.50.2300 1 131 6.2E-38 T 11-10-2018 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 SUPERFAMILY SSF52172 3 162 4.98E-35 T 11-10-2018 IPR011006 CheY-like superfamily BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 140 193 1.3E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21545 74f85b54730ca5860024d45c0cc538cb 205 SMART SM00421 138 195 3.9E-17 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_02080 28c994f20d09471214840c604bf76bf0 180 Gene3D G3DSA:2.160.10.10 1 180 2.9E-56 T 11-10-2018 BED32_02080 28c994f20d09471214840c604bf76bf0 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 9.1E-8 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_02080 28c994f20d09471214840c604bf76bf0 180 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 46 2.9E-5 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_02080 28c994f20d09471214840c604bf76bf0 180 SUPERFAMILY SSF51161 4 175 1.8E-45 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_17515 0a5eb3c326c082716ff5c4c1cd089a4b 109 Hamap MF_02012 Cell division protein ZapA [zapA]. 1 109 33.686 T 11-10-2018 IPR023771 Cell division protein ZapA, eubacteria BED32_17515 0a5eb3c326c082716ff5c4c1cd089a4b 109 Gene3D G3DSA:1.10.20.30 1 47 5.0E-26 T 11-10-2018 BED32_17515 0a5eb3c326c082716ff5c4c1cd089a4b 109 Pfam PF05164 Cell division protein ZapA 6 90 2.6E-19 T 11-10-2018 IPR007838 Cell division protein ZapA-like BED32_17515 0a5eb3c326c082716ff5c4c1cd089a4b 109 Gene3D G3DSA:1.20.5.50 48 102 4.1E-6 T 11-10-2018 BED32_17515 0a5eb3c326c082716ff5c4c1cd089a4b 109 SUPERFAMILY SSF102829 6 94 4.97E-25 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily BED32_06775 c174d8bac2ef1c839a30457cab85100f 600 Gene3D G3DSA:1.10.530.10 399 523 1.2E-27 T 11-10-2018 BED32_06775 c174d8bac2ef1c839a30457cab85100f 600 SUPERFAMILY SSF53955 403 518 4.73E-27 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_06775 c174d8bac2ef1c839a30457cab85100f 600 Pfam PF01464 Transglycosylase SLT domain 404 505 1.7E-16 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_14345 8175850ee03ce8da334bd150ec2c8a1c 329 Gene3D G3DSA:3.60.15.10 50 328 4.8E-82 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_14345 8175850ee03ce8da334bd150ec2c8a1c 329 Pfam PF12706 Beta-lactamase superfamily domain 89 286 4.3E-39 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_14345 8175850ee03ce8da334bd150ec2c8a1c 329 PIRSF PIRSF038896 3 328 2.8E-95 T 11-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 BED32_14345 8175850ee03ce8da334bd150ec2c8a1c 329 SUPERFAMILY SSF56281 66 293 1.62E-34 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_20100 e0661550b9c92ffe5a13910b74b14582 295 SUPERFAMILY SSF161098 56 283 1.15E-49 T 11-10-2018 IPR035906 MetI-like superfamily BED32_20100 e0661550b9c92ffe5a13910b74b14582 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 293 1.4E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_20100 e0661550b9c92ffe5a13910b74b14582 295 Gene3D G3DSA:1.10.3720.10 52 293 3.6E-57 T 11-10-2018 IPR035906 MetI-like superfamily BED32_09515 d98516912697dabbc2380c490fe88976 193 ProDom PD016592 ACTIVATOR TRANSCRIPTIONAL FLAGELLUM FLAGELLAR TRANSCRIPTION FLHC RNA DNA-BINDING REGULATION DNA-DIRECTED 1 193 3.0E-112 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 BED32_09515 d98516912697dabbc2380c490fe88976 193 Hamap MF_01891 Flagellar transcriptional regulator FlhC [flhC]. 1 187 46.422 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 BED32_09515 d98516912697dabbc2380c490fe88976 193 PIRSF PIRSF003159 1 182 6.2E-91 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 BED32_09515 d98516912697dabbc2380c490fe88976 193 Pfam PF05280 Flagellar transcriptional activator (FlhC) 1 173 2.9E-84 T 11-10-2018 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 BED32_09515 d98516912697dabbc2380c490fe88976 193 SUPERFAMILY SSF160930 5 161 1.23E-65 T 11-10-2018 BED32_08895 9ed15639af6cc7445f15f042a5e2c030 196 Gene3D G3DSA:3.30.70.1710 1 107 1.8E-24 T 11-10-2018 BED32_08895 9ed15639af6cc7445f15f042a5e2c030 196 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 62 1.0E-20 T 11-10-2018 BED32_08895 9ed15639af6cc7445f15f042a5e2c030 196 Pfam PF00936 BMC domain 1 76 3.1E-20 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08895 9ed15639af6cc7445f15f042a5e2c030 196 SUPERFAMILY SSF143414 1 87 1.44E-22 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08895 9ed15639af6cc7445f15f042a5e2c030 196 SMART SM00877 1 76 6.0E-23 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_21910 bc830e22b28edf58c594637997dc39b3 591 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 223 482 1.3E-21 T 11-10-2018 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 SUPERFAMILY SSF52402 1 221 3.75E-67 T 11-10-2018 BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 220 50.895 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 Pfam PF06508 Queuosine biosynthesis protein QueC 3 212 6.2E-81 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 PIRSF PIRSF006293 1 226 9.4E-83 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 Gene3D G3DSA:3.40.50.620 1 232 1.1E-82 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_06115 2021d6d21fb35b4fe3569daded161b5a 232 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 207 2.0E-82 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 BED32_07075 1b28cb157ead1ba2dea4013839ad6df3 487 Gene3D G3DSA:3.40.50.300 1 194 5.9E-39 T 11-10-2018 BED32_13175 f9840860c37a072fb5986e957bd2d561 309 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 6.1E-129 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BED32_13175 f9840860c37a072fb5986e957bd2d561 309 Gene3D G3DSA:3.40.366.10 6 286 3.2E-108 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 BED32_13175 f9840860c37a072fb5986e957bd2d561 309 Pfam PF00698 Acyl transferase domain 7 293 1.1E-35 T 11-10-2018 IPR014043 Acyl transferase BED32_13175 f9840860c37a072fb5986e957bd2d561 309 Gene3D G3DSA:3.30.70.250 125 197 3.2E-108 T 11-10-2018 BED32_13175 f9840860c37a072fb5986e957bd2d561 309 SUPERFAMILY SSF55048 128 197 1.07E-17 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding BED32_13175 f9840860c37a072fb5986e957bd2d561 309 SUPERFAMILY SSF52151 4 307 1.41E-80 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BED32_13175 f9840860c37a072fb5986e957bd2d561 309 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 7.6E-41 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain BED32_13175 f9840860c37a072fb5986e957bd2d561 309 PIRSF PIRSF000446 1 309 2.1E-137 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 BED32_09880 7dd704ca238706871b1deff3bce83313 187 Gene3D G3DSA:3.15.10.40 17 187 1.8E-70 T 11-10-2018 BED32_09880 7dd704ca238706871b1deff3bce83313 187 Pfam PF07273 Protein of unknown function (DUF1439) 29 180 1.3E-57 T 11-10-2018 IPR010835 Protein of unknown function DUF1439 BED32_15830 d440030fca58c6fdf37b323a97ab8b22 181 Gene3D G3DSA:3.40.1420.10 51 181 1.0E-41 T 11-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily BED32_15830 d440030fca58c6fdf37b323a97ab8b22 181 SUPERFAMILY SSF89872 54 181 7.98E-44 T 11-10-2018 IPR036501 Inhibitor of vertebrate lysozyme superfamily BED32_15830 d440030fca58c6fdf37b323a97ab8b22 181 PIRSF PIRSF009103 17 181 9.6E-54 T 11-10-2018 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 BED32_15830 d440030fca58c6fdf37b323a97ab8b22 181 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 61 179 4.1E-47 T 11-10-2018 BED32_11040 55fabe47e0376ad6b0c34906c48de2d5 271 Pfam PF00005 ABC transporter 31 178 4.2E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_11040 55fabe47e0376ad6b0c34906c48de2d5 271 SMART SM00382 39 228 1.6E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11040 55fabe47e0376ad6b0c34906c48de2d5 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_11040 55fabe47e0376ad6b0c34906c48de2d5 271 Gene3D G3DSA:3.40.50.300 3 266 3.4E-73 T 11-10-2018 BED32_11040 55fabe47e0376ad6b0c34906c48de2d5 271 SUPERFAMILY SSF52540 5 249 7.24E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16240 71806fc0f935911840ce9d940ff512af 303 Gene3D G3DSA:3.40.50.300 3 185 9.3E-51 T 11-10-2018 BED32_16240 71806fc0f935911840ce9d940ff512af 303 Pfam PF07650 KH domain 210 286 2.3E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_16240 71806fc0f935911840ce9d940ff512af 303 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 80 98 1.0E-5 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_16240 71806fc0f935911840ce9d940ff512af 303 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 12 32 1.0E-5 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_16240 71806fc0f935911840ce9d940ff512af 303 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 281 6.3E-118 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16240 71806fc0f935911840ce9d940ff512af 303 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 171 8.8E-41 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 BED32_16240 71806fc0f935911840ce9d940ff512af 303 SUPERFAMILY SSF52540 12 206 7.15E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_16240 71806fc0f935911840ce9d940ff512af 303 Pfam PF01926 50S ribosome-binding GTPase 12 126 1.3E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_16240 71806fc0f935911840ce9d940ff512af 303 Hamap MF_00367 GTPase Era [era]. 7 298 35.871 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16240 71806fc0f935911840ce9d940ff512af 303 SUPERFAMILY SSF54814 183 298 1.44E-42 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 BED32_16240 71806fc0f935911840ce9d940ff512af 303 Gene3D G3DSA:3.30.300.20 187 303 1.2E-43 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_14355 c08082bd5b0259bf68152310dcd695e6 380 Gene3D G3DSA:3.40.710.10 28 378 1.7E-132 T 11-10-2018 BED32_14355 c08082bd5b0259bf68152310dcd695e6 380 SUPERFAMILY SSF56601 35 359 1.07E-67 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_14355 c08082bd5b0259bf68152310dcd695e6 380 Pfam PF00144 Beta-lactamase 47 359 1.1E-61 T 11-10-2018 IPR001466 Beta-lactamase-related BED32_10930 fe122e32a00c87647088d5e8d815bac4 543 Pfam PF00884 Sulfatase 237 525 1.2E-45 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BED32_10930 fe122e32a00c87647088d5e8d815bac4 543 Pfam PF08019 Domain of unknown function (DUF1705) 56 208 8.5E-49 T 11-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 BED32_10930 fe122e32a00c87647088d5e8d815bac4 543 Gene3D G3DSA:3.40.720.10 224 543 3.1E-87 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_10930 fe122e32a00c87647088d5e8d815bac4 543 SUPERFAMILY SSF53649 237 539 4.58E-22 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 262 282 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 SUPERFAMILY SSF56796 1 384 1.83E-107 T 11-10-2018 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 Gene3D G3DSA:1.20.1090.10 183 385 3.0E-47 T 11-10-2018 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 171 199 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 359 3.5E-89 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BED32_03565 1f7626a8a381b614c5d6214b544fba23 385 Gene3D G3DSA:3.40.50.1970 1 182 7.7E-49 T 11-10-2018 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 1.2E-39 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 1.6E-68 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 Gene3D G3DSA:3.40.50.720 6 259 3.7E-107 T 11-10-2018 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 SUPERFAMILY SSF51735 123 286 1.22E-52 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 6.5E-88 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 Gene3D G3DSA:3.40.50.10860 8 276 3.7E-107 T 11-10-2018 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 38.02 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 BED32_06475 5fd1b08ab19daa0a7a5bbd1f94276bf9 288 SUPERFAMILY SSF53223 1 122 1.44E-40 T 11-10-2018 BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 SUPERFAMILY SSF50331 243 340 2.3E-5 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 SMART SM00382 28 213 8.0E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 SUPERFAMILY SSF52540 4 239 9.72E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 Gene3D G3DSA:3.40.50.300 2 270 5.8E-70 T 11-10-2018 BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_15180 ee6cc13d14aff1c5a757a6b823a2e641 349 Pfam PF00005 ABC transporter 19 163 4.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14580 e037f0ae384146e1f49feb6d0fb99a24 321 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 321 23.5 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14580 e037f0ae384146e1f49feb6d0fb99a24 321 Pfam PF00146 NADH dehydrogenase 17 316 2.4E-120 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14580 e037f0ae384146e1f49feb6d0fb99a24 321 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14580 e037f0ae384146e1f49feb6d0fb99a24 321 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 211 224 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 SUPERFAMILY SSF103515 952 1243 8.5E-42 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 Gene3D G3DSA:2.40.128.130 941 1243 6.0E-50 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 Gene3D G3DSA:2.160.20.20 306 433 8.6E-6 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 Gene3D G3DSA:2.160.20.20 500 940 6.6E-31 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 846 1243 4.0E-77 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 SUPERFAMILY SSF51126 542 938 1.82E-17 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 Pfam PF03797 Autotransporter beta-domain 985 1219 3.7E-33 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 SMART SM00869 982 1232 1.5E-31 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 Pfam PF03212 Pertactin 830 937 1.1E-12 T 11-10-2018 IPR004899 Pertactin, central region BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 PRINTS PR01484 Pertactin virulence factor family signature 1198 1223 2.0E-8 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 PRINTS PR01484 Pertactin virulence factor family signature 1131 1154 2.0E-8 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 PRINTS PR01484 Pertactin virulence factor family signature 1160 1181 2.0E-8 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_16025 d3dbe45feeb92e19ded0b83582fdeddb 1243 PRINTS PR01484 Pertactin virulence factor family signature 1223 1243 2.0E-8 T 11-10-2018 IPR003991 Pertactin virulence factor family GO:0007155 BED32_09015 eb8ed544699528faa1dac85ec6b4f0ad 93 TIGRFAM TIGR01165 cbiN: cobalt transport protein 1 85 2.7E-37 T 11-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 BED32_09015 eb8ed544699528faa1dac85ec6b4f0ad 93 Hamap MF_00330 Cobalt transport protein CbiN [cbiN]. 1 93 41.7 T 11-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 BED32_09015 eb8ed544699528faa1dac85ec6b4f0ad 93 Pfam PF02553 Cobalt transport protein component CbiN 5 69 3.1E-27 T 11-10-2018 IPR003705 Cobalt transport protein CbiN GO:0006824|GO:0009236|GO:0015087|GO:0016020 BED32_05475 f858d7f01476d7b99f7702aee9293aca 231 TIGRFAM TIGR01641 phageSPP1_gp7: phage head morphogenesis protein, SPP1 gp7 family 114 225 2.7E-12 T 11-10-2018 IPR006528 Phage head morphogenesis domain BED32_05475 f858d7f01476d7b99f7702aee9293aca 231 Pfam PF04233 Phage Mu protein F like protein 112 220 1.1E-14 T 11-10-2018 IPR006528 Phage head morphogenesis domain BED32_00860 ed73d8390a9559b7efc69e3ab2f5a33b 413 SUPERFAMILY SSF49401 243 411 4.87E-10 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_00860 ed73d8390a9559b7efc69e3ab2f5a33b 413 Gene3D G3DSA:2.60.40.1090 241 411 8.9E-9 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_00860 ed73d8390a9559b7efc69e3ab2f5a33b 413 Pfam PF00419 Fimbrial protein 235 413 1.5E-28 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_00860 ed73d8390a9559b7efc69e3ab2f5a33b 413 PIRSF PIRSF029766 14 413 7.3E-169 T 11-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 BED32_03960 8cb7d8038545da3cad5f99b8b12dd542 127 Pfam PF02561 Flagellar protein FliS 9 122 4.9E-27 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BED32_03960 8cb7d8038545da3cad5f99b8b12dd542 127 PIRSF PIRSF039090 1 127 2.4E-33 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BED32_03960 8cb7d8038545da3cad5f99b8b12dd542 127 TIGRFAM TIGR00208 fliS: flagellar protein FliS 2 123 1.7E-20 T 11-10-2018 IPR003713 Flagellar protein FliS GO:0044780 BED32_03960 8cb7d8038545da3cad5f99b8b12dd542 127 Gene3D G3DSA:1.20.120.340 1 127 1.1E-30 T 11-10-2018 BED32_03960 8cb7d8038545da3cad5f99b8b12dd542 127 SUPERFAMILY SSF101116 8 123 5.75E-29 T 11-10-2018 IPR036584 Flagellar protein FliS superfamily GO:0044780 BED32_00225 7094d31ccc67c9c916a7026dd2c1846f 217 Pfam PF13276 HTH-like domain 41 99 6.6E-7 T 11-10-2018 IPR025948 HTH-like domain BED32_00225 7094d31ccc67c9c916a7026dd2c1846f 217 Gene3D G3DSA:3.30.420.10 108 216 6.5E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_00225 7094d31ccc67c9c916a7026dd2c1846f 217 SUPERFAMILY SSF53098 110 212 6.98E-20 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00225 7094d31ccc67c9c916a7026dd2c1846f 217 Pfam PF00665 Integrase core domain 114 212 3.3E-13 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_00230 7094d31ccc67c9c916a7026dd2c1846f 217 Pfam PF13276 HTH-like domain 41 99 6.6E-7 T 11-10-2018 IPR025948 HTH-like domain BED32_00230 7094d31ccc67c9c916a7026dd2c1846f 217 Gene3D G3DSA:3.30.420.10 108 216 6.5E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_00230 7094d31ccc67c9c916a7026dd2c1846f 217 SUPERFAMILY SSF53098 110 212 6.98E-20 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00230 7094d31ccc67c9c916a7026dd2c1846f 217 Pfam PF00665 Integrase core domain 114 212 3.3E-13 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_03255 b00e4cdce46c604096f9d5d625cafcae 496 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 108 495 5.7E-154 T 11-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 BED32_03255 b00e4cdce46c604096f9d5d625cafcae 496 Gene3D G3DSA:3.90.1210.30 3 85 8.9E-25 T 11-10-2018 BED32_03255 b00e4cdce46c604096f9d5d625cafcae 496 SMART SM00858 11 82 1.4E-11 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 BED32_03255 b00e4cdce46c604096f9d5d625cafcae 496 Pfam PF08666 SAF domain 11 80 5.7E-12 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Gene3D G3DSA:1.20.200.10 108 446 1.6E-148 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 41.136 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 3.3E-210 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Gene3D G3DSA:1.10.275.10 1 107 6.2E-37 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Gene3D G3DSA:1.10.40.30 363 433 1.6E-148 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 SUPERFAMILY SSF48557 3 456 6.28E-141 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Pfam PF00206 Lyase 6 301 4.3E-97 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.4E-23 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 6.1E-68 T 11-10-2018 BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.7E-28 T 11-10-2018 IPR000362 Fumarate lyase family BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.7E-28 T 11-10-2018 IPR000362 Fumarate lyase family BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.7E-28 T 11-10-2018 IPR000362 Fumarate lyase family BED32_00625 e9d3235d1668e73fed45d3bfd14d7c37 457 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.7E-28 T 11-10-2018 IPR000362 Fumarate lyase family BED32_21580 4d4db8535ae1f89d1eeac8aa9fcdec7c 399 Gene3D G3DSA:3.40.50.720 1 399 3.5E-184 T 11-10-2018 BED32_21580 4d4db8535ae1f89d1eeac8aa9fcdec7c 399 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 393 54.313 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_21580 4d4db8535ae1f89d1eeac8aa9fcdec7c 399 Pfam PF07055 Enoyl reductase FAD binding domain 324 387 4.0E-28 T 11-10-2018 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_21580 4d4db8535ae1f89d1eeac8aa9fcdec7c 399 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 2.3E-38 T 11-10-2018 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_21580 4d4db8535ae1f89d1eeac8aa9fcdec7c 399 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 1.0E-107 T 11-10-2018 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_15705 458750d7c927fbbf654d40401574f21a 270 Gene3D G3DSA:3.40.50.300 20 266 4.4E-63 T 11-10-2018 BED32_15705 458750d7c927fbbf654d40401574f21a 270 SMART SM00382 48 245 1.7E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15705 458750d7c927fbbf654d40401574f21a 270 Pfam PF00005 ABC transporter 39 195 2.6E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_15705 458750d7c927fbbf654d40401574f21a 270 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 24 270 8.1E-118 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 BED32_15705 458750d7c927fbbf654d40401574f21a 270 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_15705 458750d7c927fbbf654d40401574f21a 270 SUPERFAMILY SSF52540 21 257 8.11E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12025 cc5070b3c02de8c58b09b67e85e0db75 215 SUPERFAMILY SSF56925 27 215 1.05E-27 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_12025 cc5070b3c02de8c58b09b67e85e0db75 215 Gene3D G3DSA:2.40.160.20 26 215 1.4E-77 T 11-10-2018 BED32_12025 cc5070b3c02de8c58b09b67e85e0db75 215 Pfam PF03922 OmpW family 27 215 3.2E-65 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 BED32_12025 cc5070b3c02de8c58b09b67e85e0db75 215 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 207 215 - T 11-10-2018 IPR000758 Virulence-related outer membrane protein GO:0009279 BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 319 2.6E-24 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 SUPERFAMILY SSF51735 108 289 1.08E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 116 288 1.3E-48 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 Gene3D G3DSA:3.40.50.720 27 313 1.5E-108 T 11-10-2018 BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 SUPERFAMILY SSF52283 10 143 3.78E-30 T 11-10-2018 BED32_14515 73e96cadefbd7fb6f98e6147bdcdf797 321 Gene3D G3DSA:3.40.50.720 108 291 1.5E-108 T 11-10-2018 BED32_04305 23887971eecc25d34650814285c214d1 239 Pfam PF02390 Putative methyltransferase 64 233 1.9E-60 T 11-10-2018 BED32_04305 23887971eecc25d34650814285c214d1 239 Gene3D G3DSA:3.40.50.150 30 239 2.0E-71 T 11-10-2018 BED32_04305 23887971eecc25d34650814285c214d1 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 24 238 31.042 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BED32_04305 23887971eecc25d34650814285c214d1 239 SUPERFAMILY SSF53335 17 237 9.97E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_04305 23887971eecc25d34650814285c214d1 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 49 238 1.4E-70 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 SUPERFAMILY SSF56935 56 713 3.85E-126 T 11-10-2018 BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 Gene3D G3DSA:2.170.130.10 48 177 3.0E-34 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 Gene3D G3DSA:2.40.170.20 178 713 6.7E-123 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 Pfam PF07715 TonB-dependent Receptor Plug Domain 71 168 3.0E-18 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 72 713 8.9E-104 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BED32_05820 d7b1b3d57a863b0608beb6b007b214d3 713 Pfam PF00593 TonB dependent receptor 241 711 1.6E-62 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 TIGRFAM TIGR04299 antiport_PotE: putrescine-ornithine antiporter 5 433 5.7E-244 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 PIRSF PIRSF006060 1 440 3.4E-52 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 Pfam PF13520 Amino acid permease 10 404 9.7E-51 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 Hamap MF_02073 Putrescine transporter PotE [potE]. 9 436 36.512 T 11-10-2018 IPR027566 Putrescine transporter PotE GO:0015496|GO:0015822|GO:0015847 BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 1 430 5.1E-148 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 BED32_04225 b21676ba2d52f9a00305eaddfaa09766 443 Gene3D G3DSA:1.20.1740.10 3 441 5.0E-63 T 11-10-2018 BED32_00330 ab2b348536c9860b589fc3aea2028cfb 115 Pfam PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) 1 115 2.7E-58 T 11-10-2018 IPR013348 Type III secretion system YscG GO:0009405 BED32_00330 ab2b348536c9860b589fc3aea2028cfb 115 TIGRFAM TIGR02508 type_III_yscG: type III secretion protein, YscG family 1 115 1.6E-60 T 11-10-2018 IPR013348 Type III secretion system YscG GO:0009405 BED32_00330 ab2b348536c9860b589fc3aea2028cfb 115 Gene3D G3DSA:1.25.40.10 1 115 1.4E-59 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_04235 d39404d4023fee58b7400b5cd00329eb 357 Gene3D G3DSA:3.60.60.10 26 347 3.4E-128 T 11-10-2018 BED32_04235 d39404d4023fee58b7400b5cd00329eb 357 SUPERFAMILY SSF56235 29 326 1.08E-95 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_04235 d39404d4023fee58b7400b5cd00329eb 357 Pfam PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family 29 315 5.8E-47 T 11-10-2018 IPR029132 Choloylglycine hydrolase/NAAA C-terminal BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 SUPERFAMILY SSF48557 10 454 1.26E-104 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 5.8E-52 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 Gene3D G3DSA:1.20.200.10 118 446 1.1E-157 T 11-10-2018 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 4.7E-17 T 11-10-2018 IPR000362 Fumarate lyase family BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 4.7E-17 T 11-10-2018 IPR000362 Fumarate lyase family BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 4.7E-17 T 11-10-2018 IPR000362 Fumarate lyase family BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 4.7E-17 T 11-10-2018 IPR000362 Fumarate lyase family BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 1.4E-151 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 Gene3D G3DSA:1.10.40.30 382 445 1.1E-157 T 11-10-2018 BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 Gene3D G3DSA:1.10.275.10 1 117 1.9E-53 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal BED32_13000 0d7b7d783efdce0e150b38e5e7f40f17 456 Pfam PF00206 Lyase 14 312 1.2E-77 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal BED32_14650 d4721140aeb6ce962384e3d5af9bfe91 151 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 9 151 36.225 T 11-10-2018 IPR007334 Uncharacterised protein family UPF0208 BED32_14650 d4721140aeb6ce962384e3d5af9bfe91 151 Pfam PF04217 Protein of unknown function, DUF412 11 149 5.0E-60 T 11-10-2018 IPR007334 Uncharacterised protein family UPF0208 BED32_08085 9748cb5a214b355a94d56b800281272f 311 SUPERFAMILY SSF56601 5 281 5.64E-62 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_08085 9748cb5a214b355a94d56b800281272f 311 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 37 265 4.7E-81 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 BED32_08085 9748cb5a214b355a94d56b800281272f 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 147 160 5.0E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_08085 9748cb5a214b355a94d56b800281272f 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 70 81 5.0E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_08085 9748cb5a214b355a94d56b800281272f 311 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 120 137 5.0E-14 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 BED32_08085 9748cb5a214b355a94d56b800281272f 311 Gene3D G3DSA:3.40.710.10 22 307 2.8E-64 T 11-10-2018 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 Gene3D G3DSA:3.40.47.10 1 265 1.3E-84 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 PIRSF PIRSF000447 1 426 1.4E-161 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 SUPERFAMILY SSF53901 3 262 6.1E-72 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 Gene3D G3DSA:3.40.47.10 271 426 7.4E-47 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 378 1.4E-35 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 422 4.4E-164 T 11-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 3 257 5.6E-59 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 SUPERFAMILY SSF53901 225 424 1.7E-62 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 SMART SM00825 Beta-ketoacyl synthase 6 426 2.1E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BED32_13495 79fb28719220bc5abc1f60307346f9d8 426 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 164 180 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 SUPERFAMILY SSF53822 70 339 9.24E-80 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 SUPERFAMILY SSF47413 10 68 8.94E-19 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 Gene3D G3DSA:1.10.260.40 9 64 4.7E-24 T 11-10-2018 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 ProSitePatterns PS00356 LacI-type HTH domain signature. 13 31 - T 11-10-2018 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 22 32 3.7E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 12 22 3.7E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 Gene3D G3DSA:3.40.50.2300 65 314 9.2E-68 T 11-10-2018 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 Gene3D G3DSA:3.40.50.2300 169 298 9.2E-68 T 11-10-2018 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 SMART SM00354 10 80 4.3E-31 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 Pfam PF13377 Periplasmic binding protein-like domain 180 338 9.1E-34 T 11-10-2018 BED32_08435 789a48b71a50a28755025b99a48dc1b1 345 Pfam PF00356 Bacterial regulatory proteins, lacI family 12 57 2.0E-19 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 199 331 4.9E-29 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Gene3D G3DSA:3.40.50.970 366 559 1.7E-56 T 11-10-2018 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 TIGRFAM TIGR02418 acolac_catab: acetolactate synthase, catabolic 13 551 8.9E-260 T 11-10-2018 IPR012782 Acetolactate synthase, catabolic GO:0000287|GO:0003984|GO:0030976|GO:0034077 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Gene3D G3DSA:3.40.50.1220 190 357 2.3E-38 T 11-10-2018 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 SUPERFAMILY SSF52518 13 182 7.85E-46 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 430 449 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 538 3.3E-38 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 SUPERFAMILY SSF52518 371 551 7.86E-51 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 SUPERFAMILY SSF52467 195 352 5.45E-37 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 13 177 7.9E-48 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_01385 c310b6c514a3c6d50519d8685f1c55e9 559 Gene3D G3DSA:3.40.50.970 4 188 1.4E-62 T 11-10-2018 BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 SUPERFAMILY SSF57716 111 149 5.7E-10 T 11-10-2018 BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 Gene3D G3DSA:1.20.120.910 20 150 1.4E-35 T 11-10-2018 BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 32 140 7.0E-51 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 PRINTS PR00618 DksA/TraR zinc finger signature 126 138 9.9E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 PRINTS PR00618 DksA/TraR zinc finger signature 114 125 9.9E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 114 138 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 SUPERFAMILY SSF109635 9 110 2.88E-37 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 111 143 3.1E-10 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 BED32_17640 6e4a5c9c555b0da2501b1a6b54d0d155 151 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 28 150 29.866 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 BED32_22030 a82735d8e44cb4ebd18c823e49e5f5a1 1616 SUPERFAMILY SSF56399 1330 1362 1.78E-5 T 11-10-2018 BED32_22030 a82735d8e44cb4ebd18c823e49e5f5a1 1616 Gene3D G3DSA:2.180.10.10 901 1367 9.5E-21 T 11-10-2018 BED32_22030 a82735d8e44cb4ebd18c823e49e5f5a1 1616 Pfam PF05593 RHS Repeat 780 817 9.7E-5 T 11-10-2018 IPR031325 RHS repeat BED32_22030 a82735d8e44cb4ebd18c823e49e5f5a1 1616 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1289 1368 3.7E-19 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 BED32_17235 6c8f0b617b99234571dfbeb290a6f5bc 127 Pfam PF01638 HxlR-like helix-turn-helix 32 120 3.1E-25 T 11-10-2018 IPR002577 Helix-turn-helix, HxlR type BED32_17235 6c8f0b617b99234571dfbeb290a6f5bc 127 SUPERFAMILY SSF46785 21 123 2.85E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_17235 6c8f0b617b99234571dfbeb290a6f5bc 127 Gene3D G3DSA:1.10.10.10 8 126 1.3E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 Gene3D G3DSA:1.10.1390.10 507 547 1.9E-20 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 46 524 42.833 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 497 514 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 SUPERFAMILY SSF53697 5 547 1.45E-227 T 11-10-2018 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 Gene3D G3DSA:3.40.50.10490 11 506 6.4E-242 T 11-10-2018 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 265 278 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 Gene3D G3DSA:3.40.50.10490 98 291 6.4E-242 T 11-10-2018 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 Pfam PF00342 Phosphoglucose isomerase 52 541 1.9E-257 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 465 483 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 150 169 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 497 510 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 261 279 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 483 497 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_02165 bc1e57e17fd5b1047c0b33348359843b 548 PRINTS PR00662 Glucose-6-phosphate isomerase signature 338 359 1.5E-55 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 Pfam PF00772 DnaB-like helicase N terminal domain 3 95 5.9E-9 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 Gene3D G3DSA:3.40.50.300 147 426 8.1E-72 T 11-10-2018 BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 SUPERFAMILY SSF52540 172 414 3.42E-38 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 Gene3D G3DSA:1.10.860.10 1 112 3.2E-11 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 SMART SM00382 188 383 4.1E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 Pfam PF03796 DnaB-like helicase C terminal domain 172 416 1.3E-65 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 BED32_06950 d270a88f7a137a77e92ffa07663f9853 445 SUPERFAMILY SSF48024 3 102 1.7E-11 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 BED32_14680 0b8935c0af7f02d528b9b5fb5180fb11 418 Pfam PF03611 PTS system sugar-specific permease component 11 405 3.0E-148 T 11-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 BED32_14955 9d3eeec216a7248c86370562d4a32136 406 SUPERFAMILY SSF48452 162 266 1.93E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_14955 9d3eeec216a7248c86370562d4a32136 406 Gene3D G3DSA:1.25.40.10 152 292 5.4E-19 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_14955 9d3eeec216a7248c86370562d4a32136 406 Pfam PF14559 Tetratricopeptide repeat 175 242 1.9E-12 T 11-10-2018 BED32_14955 9d3eeec216a7248c86370562d4a32136 406 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 112 2.7E-30 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI BED32_00970 dcf09385b81d89fcfd7ec2a7649435d0 141 Gene3D G3DSA:3.30.300.20 48 141 9.9E-33 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_00970 dcf09385b81d89fcfd7ec2a7649435d0 141 Pfam PF02566 OsmC-like protein 45 138 1.6E-16 T 11-10-2018 IPR003718 OsmC/Ohr family BED32_00970 dcf09385b81d89fcfd7ec2a7649435d0 141 SUPERFAMILY SSF82784 1 140 3.93E-43 T 11-10-2018 IPR036102 OsmC/Ohr superfamily BED32_00970 dcf09385b81d89fcfd7ec2a7649435d0 141 Gene3D G3DSA:2.20.25.10 1 47 1.0E-22 T 11-10-2018 BED32_00970 dcf09385b81d89fcfd7ec2a7649435d0 141 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 5.6E-55 T 11-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 BED32_08200 b3e48fb2a50ecbfdc23862258fbd5743 259 SUPERFAMILY SSF53850 63 220 2.91E-14 T 11-10-2018 BED32_08200 b3e48fb2a50ecbfdc23862258fbd5743 259 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 81 236 8.0E-20 T 11-10-2018 BED32_08200 b3e48fb2a50ecbfdc23862258fbd5743 259 Gene3D G3DSA:3.40.190.10 83 190 3.8E-18 T 11-10-2018 BED32_08200 b3e48fb2a50ecbfdc23862258fbd5743 259 Gene3D G3DSA:3.40.190.10 81 220 3.8E-18 T 11-10-2018 BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 Pfam PF00072 Response regulator receiver domain 4 112 9.6E-31 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 228 4.6E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 Gene3D G3DSA:1.10.10.10 130 232 1.7E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 SMART SM00448 2 111 1.0E-46 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 Gene3D G3DSA:3.40.50.2300 1 129 6.0E-42 T 11-10-2018 BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 SUPERFAMILY SSF52172 1 188 1.05E-41 T 11-10-2018 IPR011006 CheY-like superfamily BED32_20875 b57d244d8d7030ae1f699026f383d9b5 232 SMART SM00862 152 228 1.0E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_01005 63d484db580304a783992a41dc3685c7 550 Pfam PF11658 Cellulose biosynthesis protein BcsG 23 545 1.5E-237 T 11-10-2018 IPR017744 Cellulose biosynthesis protein BcsG BED32_01005 63d484db580304a783992a41dc3685c7 550 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 21 548 7.1E-233 T 11-10-2018 IPR017744 Cellulose biosynthesis protein BcsG BED32_13855 d693394cb637889b552a7d3dca40b49d 191 Pfam PF12883 Protein of unknown function (DUF3828) 41 174 6.3E-14 T 11-10-2018 IPR024289 Domain of unknown function DUF3828 BED32_05670 8c03ef3ecb4783175b35150f6991cc4c 279 Pfam PF04205 FMN-binding domain 164 259 1.5E-15 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 BED32_05670 8c03ef3ecb4783175b35150f6991cc4c 279 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 23 274 36.228 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 BED32_05670 8c03ef3ecb4783175b35150f6991cc4c 279 PIRSF PIRSF009437 15 277 3.3E-101 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 BED32_05670 8c03ef3ecb4783175b35150f6991cc4c 279 SMART SM00900 164 262 3.2E-34 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 BED32_05670 8c03ef3ecb4783175b35150f6991cc4c 279 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 22 270 3.3E-100 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 BED32_12490 5de03f450fbea2de439f5646a80f2be4 420 Gene3D G3DSA:3.40.980.20 243 419 1.5E-58 T 11-10-2018 BED32_12490 5de03f450fbea2de439f5646a80f2be4 420 Pfam PF07005 Putative sugar-binding N-terminal domain 3 226 1.3E-67 T 11-10-2018 IPR010737 Four-carbon acid sugar kinase, N-terminal domain BED32_12490 5de03f450fbea2de439f5646a80f2be4 420 Gene3D G3DSA:3.40.50.10840 1 234 9.7E-85 T 11-10-2018 IPR037051 Four-carbon acid sugar kinase, N-terminal domain superfamily BED32_12490 5de03f450fbea2de439f5646a80f2be4 420 SUPERFAMILY SSF142764 3 416 2.75E-129 T 11-10-2018 BED32_12490 5de03f450fbea2de439f5646a80f2be4 420 Pfam PF17042 Putative nucleotide-binding of sugar-metabolising enzyme 254 411 7.3E-39 T 11-10-2018 IPR031475 Four-carbon acid sugar kinase, C-terminal domain BED32_03420 6e0572b5e60157f94a6274b307cbedeb 217 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.742 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BED32_03420 6e0572b5e60157f94a6274b307cbedeb 217 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 1.9E-51 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BED32_03420 6e0572b5e60157f94a6274b307cbedeb 217 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 1 195 5.6E-82 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BED32_03420 6e0572b5e60157f94a6274b307cbedeb 217 SMART SM01207 10 185 6.1E-86 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Gene3D G3DSA:1.20.58.1510 287 494 2.6E-96 T 11-10-2018 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 SMART SM00382 38 187 3.1E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Gene3D G3DSA:2.40.128.430 331 441 2.6E-96 T 11-10-2018 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Pfam PF07728 AAA domain (dynein-related subfamily) 41 171 1.4E-24 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Gene3D G3DSA:1.10.8.300 222 285 6.9E-28 T 11-10-2018 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 SUPERFAMILY SSF52540 21 289 2.34E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Hamap MF_01625 ATPase RavA [ravA]. 1 498 58.208 T 11-10-2018 IPR023671 ATPase RavA GO:0005737|GO:0016887 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Pfam PF12592 Protein of unknown function (DUF3763) 444 497 1.1E-19 T 11-10-2018 IPR022547 ATPase, RavA, C-terminal GO:0042626 BED32_21390 a3869087d6c50a6597c5dea85720337d 502 Gene3D G3DSA:3.40.50.300 1 221 1.3E-61 T 11-10-2018 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.544 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 SUPERFAMILY SSF53137 15 129 7.19E-48 T 11-10-2018 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 4.7E-55 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 Pfam PF00411 Ribosomal protein S11 19 128 1.9E-54 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 PIRSF PIRSF002131 1 129 1.6E-52 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 Gene3D G3DSA:3.30.420.80 1 129 2.8E-58 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01990 a9ea688fdcce9ae56c0fdb81b15346ce 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site BED32_00200 98ede2b1548549700326706574849f24 178 PRINTS PR01756 Yersinia outer membrane adhesin signature 54 69 1.1E-25 T 11-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 BED32_00200 98ede2b1548549700326706574849f24 178 PRINTS PR01756 Yersinia outer membrane adhesin signature 2 20 1.1E-25 T 11-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 BED32_00200 98ede2b1548549700326706574849f24 178 PRINTS PR01756 Yersinia outer membrane adhesin signature 81 97 1.1E-25 T 11-10-2018 IPR008126 Outer membrane adhesion, Yersinia GO:0005518|GO:0007155|GO:0009405|GO:0019867 BED32_00200 98ede2b1548549700326706574849f24 178 Pfam PF03895 YadA-like membrane anchor domain 119 178 1.5E-16 T 11-10-2018 IPR005594 YadA-like, C-terminal BED32_00200 98ede2b1548549700326706574849f24 178 SUPERFAMILY SSF54523 85 178 2.82E-21 T 11-10-2018 BED32_00200 98ede2b1548549700326706574849f24 178 Gene3D G3DSA:3.30.1300.30 75 178 1.1E-31 T 11-10-2018 BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 33 136 1.8E-8 T 11-10-2018 IPR000560 Histidine phosphatase superfamily, clade-2 BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 34 48 - T 11-10-2018 IPR033379 Histidine acid phosphatase active site BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 Gene3D G3DSA:3.40.50.1240 32 423 2.9E-135 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 Gene3D G3DSA:3.40.50.1240 47 285 2.9E-135 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 SUPERFAMILY SSF53254 30 429 6.39E-68 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14835 a4101f20e14e579e67abfaf2c3a654f3 433 ProSitePatterns PS00778 Histidine acid phosphatases active site signature. 324 340 - T 11-10-2018 IPR033379 Histidine acid phosphatase active site BED32_09135 ffb51de08078dd2da9af62459fe53ced 279 SUPERFAMILY SSF51366 37 261 3.77E-20 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_09135 ffb51de08078dd2da9af62459fe53ced 279 Gene3D G3DSA:3.20.20.70 1 279 2.2E-126 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_18085 8dbdadb39708826e5b6e61f53c7a3d6a 125 Hamap MF_00791 Protein ApaG [apaG]. 1 125 31.663 T 11-10-2018 IPR023065 Uncharacterised protein family ApaG BED32_18085 8dbdadb39708826e5b6e61f53c7a3d6a 125 SUPERFAMILY SSF110069 5 125 3.4E-47 T 11-10-2018 IPR036767 ApaG domain superfamily BED32_18085 8dbdadb39708826e5b6e61f53c7a3d6a 125 Pfam PF04379 ApaG domain 18 102 1.2E-33 T 11-10-2018 IPR007474 ApaG domain BED32_18085 8dbdadb39708826e5b6e61f53c7a3d6a 125 Gene3D G3DSA:2.60.40.1470 1 125 3.6E-45 T 11-10-2018 IPR036767 ApaG domain superfamily BED32_12610 613b0ebc07254c688ce012cbc71c5c50 294 Pfam PF05425 Copper resistance protein D 189 287 6.7E-14 T 11-10-2018 IPR008457 Copper resistance protein D GO:0016021 BED32_17685 201b16016d5bec1fc725d254cc2c9ab0 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_17685 201b16016d5bec1fc725d254cc2c9ab0 308 SUPERFAMILY SSF52540 3 232 1.28E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17685 201b16016d5bec1fc725d254cc2c9ab0 308 Gene3D G3DSA:3.40.50.300 1 236 2.2E-66 T 11-10-2018 BED32_17685 201b16016d5bec1fc725d254cc2c9ab0 308 Pfam PF00005 ABC transporter 21 165 1.5E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_17685 201b16016d5bec1fc725d254cc2c9ab0 308 SMART SM00382 30 213 5.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_11430 fc26a767629dbf6dcdd692b4306bc233 522 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 474 5.3E-141 T 11-10-2018 IPR010352 Protein of unknown function DUF945 BED32_18375 80871784dc7c17da7e35d32ef2911edb 204 SMART SM00749 62 125 4.5E-11 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BED32_18375 80871784dc7c17da7e35d32ef2911edb 204 SMART SM00749 141 204 8.4E-13 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BED32_18375 80871784dc7c17da7e35d32ef2911edb 204 Pfam PF04972 BON domain 137 203 8.2E-19 T 11-10-2018 IPR007055 BON domain BED32_18375 80871784dc7c17da7e35d32ef2911edb 204 Pfam PF04972 BON domain 58 124 5.3E-21 T 11-10-2018 IPR007055 BON domain BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 SUPERFAMILY SSF51430 5 267 4.98E-88 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 229 244 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PRINTS PR00069 Aldo-keto reductase signature 123 140 1.2E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PRINTS PR00069 Aldo-keto reductase signature 91 109 1.2E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PRINTS PR00069 Aldo-keto reductase signature 157 186 1.2E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PRINTS PR00069 Aldo-keto reductase signature 196 220 1.2E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PRINTS PR00069 Aldo-keto reductase signature 37 61 1.2E-45 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 PIRSF PIRSF000097 1 271 1.8E-92 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 Gene3D G3DSA:3.20.20.100 1 275 4.3E-118 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 41 58 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 Pfam PF00248 Aldo/keto reductase family 18 192 1.1E-36 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 Pfam PF00248 Aldo/keto reductase family 202 260 2.3E-9 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_03560 aad168a674a8d74566c0054c7c6c2e10 277 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 123 140 - T 11-10-2018 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 BED32_16800 309bd711a5d183a40ce686ca3a4bfdaa 132 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 126 2.6E-19 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain BED32_16800 309bd711a5d183a40ce686ca3a4bfdaa 132 Gene3D G3DSA:3.10.180.10 9 128 2.4E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_16800 309bd711a5d183a40ce686ca3a4bfdaa 132 SUPERFAMILY SSF54593 4 129 8.46E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase BED32_17950 d8a384808c091b8e0c48ac4f2bfdd0ad 599 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 11-10-2018 IPR020845 AMP-binding, conserved site BED32_17950 d8a384808c091b8e0c48ac4f2bfdd0ad 599 Gene3D G3DSA:3.40.50.12780 2 314 1.6E-55 T 11-10-2018 BED32_17950 d8a384808c091b8e0c48ac4f2bfdd0ad 599 Gene3D G3DSA:3.40.50.12780 318 459 3.0E-34 T 11-10-2018 BED32_17950 d8a384808c091b8e0c48ac4f2bfdd0ad 599 Pfam PF00501 AMP-binding enzyme 15 468 1.1E-94 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 BED32_17950 d8a384808c091b8e0c48ac4f2bfdd0ad 599 SUPERFAMILY SSF56801 9 597 1.01E-113 T 11-10-2018 BED32_16435 f5947d9405559e95f9a79b2503fb30df 134 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 117 7.8E-19 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_16435 f5947d9405559e95f9a79b2503fb30df 134 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 122 17.368 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 BED32_10150 ea94348702c7ea4e5f2044d6505ea6e1 131 SUPERFAMILY SSF161084 4 124 2.22E-30 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily BED32_10150 ea94348702c7ea4e5f2044d6505ea6e1 131 Pfam PF01124 MAPEG family 4 120 2.2E-25 T 11-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein BED32_10150 ea94348702c7ea4e5f2044d6505ea6e1 131 Gene3D G3DSA:1.20.120.550 1 128 1.4E-25 T 11-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily BED32_15800 883782b920eb2317fcc62638c828d2ef 341 Pfam PF03612 Sorbitol phosphotransferase enzyme II N-terminus 5 193 1.3E-70 T 11-10-2018 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 BED32_15800 883782b920eb2317fcc62638c828d2ef 341 Pfam PF07663 Sorbitol phosphotransferase enzyme II C-terminus 248 340 6.6E-42 T 11-10-2018 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 BED32_15800 883782b920eb2317fcc62638c828d2ef 341 TIGRFAM TIGR00825 EIIBC-GUT: PTS system, glucitol/sorbitol-specific, IIBC component 5 341 2.1E-178 T 11-10-2018 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.198 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 Gene3D G3DSA:3.30.300.30 86 193 4.6E-38 T 11-10-2018 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 110 123 4.6E-30 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 18 28 4.6E-30 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 90 105 4.6E-30 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 159 171 4.6E-30 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 70 83 4.6E-30 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 Pfam PF01514 Secretory protein of YscJ/FliF family 4 180 1.4E-24 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 Gene3D G3DSA:3.30.70.1530 13 84 1.1E-27 T 11-10-2018 BED32_00315 8878f397fccf0b5aa6d20051b0043826 238 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 2 187 1.0E-73 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 194 1.2E-57 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 SMART SM00855 3 157 3.0E-22 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 6 15 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 Gene3D G3DSA:3.40.50.1240 1 212 6.2E-57 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 PIRSF PIRSF000709 2 175 6.7E-12 T 11-10-2018 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 Hamap MF_01040 Probable phosphoglycerate mutase GpmB [gpmB]. 1 215 50.832 T 11-10-2018 IPR023086 Phosphoglycerate mutase, GpmB, probable GO:0004619|GO:0006096 BED32_18255 3cb54efd454bbb02a35e118a7a7cfa4d 215 SUPERFAMILY SSF53254 1 208 1.19E-56 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_14905 6dcbbac73670abbd9d28814d69cfb159 275 Gene3D G3DSA:3.30.1380.10 20 273 7.8E-100 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_14905 6dcbbac73670abbd9d28814d69cfb159 275 PIRSF PIRSF018455 3 275 2.5E-117 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 BED32_14905 6dcbbac73670abbd9d28814d69cfb159 275 Pfam PF03411 Penicillin-insensitive murein endopeptidase 36 269 1.9E-95 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 BED32_14905 6dcbbac73670abbd9d28814d69cfb159 275 SUPERFAMILY SSF55166 21 271 2.12E-99 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_11250 e59bc8e03d4235254aff293e4f2484fe 463 Gene3D G3DSA:1.20.1740.10 1 446 1.2E-56 T 11-10-2018 BED32_11250 e59bc8e03d4235254aff293e4f2484fe 463 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 5.6E-170 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 BED32_11250 e59bc8e03d4235254aff293e4f2484fe 463 PIRSF PIRSF006060 1 462 1.5E-49 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_11250 e59bc8e03d4235254aff293e4f2484fe 463 Pfam PF13520 Amino acid permease 5 416 4.9E-74 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 3.6E-65 T 11-10-2018 IPR023798 Ribosomal protein S7 domain BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.144 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 Gene3D G3DSA:1.10.455.10 2 155 5.6E-64 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 SUPERFAMILY SSF47973 6 149 7.59E-60 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 PIRSF PIRSF002122 3 156 2.3E-63 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 BED32_01845 8fe87bc8d61e31dd523adc4cb6199cb6 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 3.4E-71 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 BED32_20280 ecbfea2dc9d5f7fb1c8a35f122d1960b 206 Pfam PF01810 LysE type translocator 14 202 3.5E-45 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_20280 ecbfea2dc9d5f7fb1c8a35f122d1960b 206 PIRSF PIRSF006324 1 205 3.8E-54 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_12020 caf60d0ab4c3326bd279d3494e7f4f9d 104 Pfam PF04972 BON domain 37 103 5.4E-21 T 11-10-2018 IPR007055 BON domain BED32_12020 caf60d0ab4c3326bd279d3494e7f4f9d 104 SMART SM00749 42 104 3.5E-7 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BED32_10675 8fe7992693a7d1950ae35bc027803f56 343 SUPERFAMILY SSF46689 18 140 2.87E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_10675 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13358 DDE superfamily endonuclease 177 316 2.3E-23 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_10675 8fe7992693a7d1950ae35bc027803f56 343 Gene3D G3DSA:3.30.420.470 143 332 1.9E-12 T 11-10-2018 BED32_10675 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13384 Homeodomain-like domain 28 73 1.2E-8 T 11-10-2018 BED32_00880 8fe7992693a7d1950ae35bc027803f56 343 SUPERFAMILY SSF46689 18 140 2.87E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00880 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13358 DDE superfamily endonuclease 177 316 2.3E-23 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_00880 8fe7992693a7d1950ae35bc027803f56 343 Gene3D G3DSA:3.30.420.470 143 332 1.9E-12 T 11-10-2018 BED32_00880 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13384 Homeodomain-like domain 28 73 1.2E-8 T 11-10-2018 BED32_20530 8fe7992693a7d1950ae35bc027803f56 343 SUPERFAMILY SSF46689 18 140 2.87E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20530 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13358 DDE superfamily endonuclease 177 316 2.3E-23 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_20530 8fe7992693a7d1950ae35bc027803f56 343 Gene3D G3DSA:3.30.420.470 143 332 1.9E-12 T 11-10-2018 BED32_20530 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13384 Homeodomain-like domain 28 73 1.2E-8 T 11-10-2018 BED32_21150 8fe7992693a7d1950ae35bc027803f56 343 SUPERFAMILY SSF46689 18 140 2.87E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_21150 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13358 DDE superfamily endonuclease 177 316 2.3E-23 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_21150 8fe7992693a7d1950ae35bc027803f56 343 Gene3D G3DSA:3.30.420.470 143 332 1.9E-12 T 11-10-2018 BED32_21150 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13384 Homeodomain-like domain 28 73 1.2E-8 T 11-10-2018 BED32_18490 8fe7992693a7d1950ae35bc027803f56 343 SUPERFAMILY SSF46689 18 140 2.87E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18490 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13358 DDE superfamily endonuclease 177 316 2.3E-23 T 11-10-2018 IPR038717 Tc1-like transposase, DDE domain BED32_18490 8fe7992693a7d1950ae35bc027803f56 343 Gene3D G3DSA:3.30.420.470 143 332 1.9E-12 T 11-10-2018 BED32_18490 8fe7992693a7d1950ae35bc027803f56 343 Pfam PF13384 Homeodomain-like domain 28 73 1.2E-8 T 11-10-2018 BED32_09925 05d8693e9ddb94b918ea8d3edff5604a 260 Pfam PF08021 Siderophore-interacting FAD-binding domain 3 118 1.8E-35 T 11-10-2018 IPR013113 FAD-binding 9, siderophore-interacting BED32_09925 05d8693e9ddb94b918ea8d3edff5604a 260 Gene3D G3DSA:3.40.50.80 121 259 5.4E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_09925 05d8693e9ddb94b918ea8d3edff5604a 260 Pfam PF04954 Siderophore-interacting protein 127 241 3.7E-34 T 11-10-2018 IPR007037 Siderophore-interacting protein, C-terminal domain BED32_09925 05d8693e9ddb94b918ea8d3edff5604a 260 Gene3D G3DSA:2.40.30.10 1 118 1.6E-30 T 11-10-2018 BED32_09925 05d8693e9ddb94b918ea8d3edff5604a 260 SUPERFAMILY SSF63380 3 123 6.13E-11 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_08655 f14d5e6b7c0fcf38f94b0ef5ee1e5cd8 289 SUPERFAMILY SSF51735 4 284 2.04E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08655 f14d5e6b7c0fcf38f94b0ef5ee1e5cd8 289 Pfam PF04321 RmlD substrate binding domain 4 260 6.9E-59 T 11-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 BED32_08655 f14d5e6b7c0fcf38f94b0ef5ee1e5cd8 289 Gene3D G3DSA:3.90.25.10 165 257 4.3E-84 T 11-10-2018 BED32_08655 f14d5e6b7c0fcf38f94b0ef5ee1e5cd8 289 Gene3D G3DSA:3.40.50.720 5 262 4.3E-84 T 11-10-2018 BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 SUPERFAMILY SSF52540 282 484 3.64E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 SUPERFAMILY SSF52540 10 227 5.11E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 Gene3D G3DSA:3.40.50.300 280 501 1.9E-40 T 11-10-2018 BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 SMART SM00382 291 483 5.5E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 SMART SM00382 36 257 2.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 Pfam PF00005 ABC transporter 27 169 1.3E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 Gene3D G3DSA:3.40.50.300 8 237 2.0E-57 T 11-10-2018 BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 ProSitePatterns PS00211 ABC transporters family signature. 407 421 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18565 6b02292f21aea094b4f4d61e69e8b448 521 Pfam PF00005 ABC transporter 284 434 1.9E-17 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 168 189 6.0E-30 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 208 225 6.0E-30 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 189 207 6.0E-30 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 103 113 6.0E-30 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 Pfam PF16031 TonB N-terminal region 37 170 5.2E-23 T 11-10-2018 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 173 233 8.0E-16 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 Gene3D G3DSA:3.30.2420.10 163 251 8.5E-28 T 11-10-2018 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 SUPERFAMILY SSF74653 169 240 1.31E-18 T 11-10-2018 BED32_12055 b051ef23ba9724ea74dc25eb618351c5 251 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 174 244 9.6E-18 T 11-10-2018 IPR006260 TonB/TolA, C-terminal BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 SUPERFAMILY SSF47413 5 63 2.6E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 64 306 1.2E-31 T 11-10-2018 IPR001761 Periplasmic binding protein/LacI sugar binding domain BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 Gene3D G3DSA:1.10.260.40 1 61 1.1E-15 T 11-10-2018 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 8 26 - T 11-10-2018 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 Gene3D G3DSA:3.40.50.2300 67 308 2.0E-63 T 11-10-2018 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 SUPERFAMILY SSF53822 63 316 9.62E-56 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 SMART SM00354 5 75 3.5E-25 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 52 2.1E-16 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_01360 70ef8d9910d1bdcfec6d1f63113e218d 331 Gene3D G3DSA:3.40.50.2300 161 292 2.0E-63 T 11-10-2018 BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 Gene3D G3DSA:3.40.30.10 11 202 1.4E-81 T 11-10-2018 BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 Gene3D G3DSA:1.20.1050.10 89 193 1.4E-81 T 11-10-2018 BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 1.4E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 SUPERFAMILY SSF52833 11 110 1.39E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 SUPERFAMILY SSF47616 82 208 2.84E-27 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_03025 c206ae6b38332c83b0db9f88ebbabdad 213 Pfam PF00043 Glutathione S-transferase, C-terminal domain 102 194 1.3E-12 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 234 248 - T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 Pfam PF00437 Type II/IV secretion system protein 53 307 5.3E-43 T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 SUPERFAMILY SSF52540 24 371 1.0E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 Gene3D G3DSA:3.30.450.90 38 140 7.1E-23 T 11-10-2018 BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 Gene3D G3DSA:3.40.50.300 144 377 1.1E-86 T 11-10-2018 BED32_04355 37b44e510382f3f0c7c42be46eaa1e7e 377 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 46 372 5.8E-124 T 11-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 BED32_15820 521603f984659e37dcac0d67469197a0 256 Gene3D G3DSA:1.10.10.10 1 58 6.6E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15820 521603f984659e37dcac0d67469197a0 256 Pfam PF00455 DeoR C terminal sensor domain 74 232 6.2E-51 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_15820 521603f984659e37dcac0d67469197a0 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 2.2E-18 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_15820 521603f984659e37dcac0d67469197a0 256 SMART SM00420 6 58 9.2E-19 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_15820 521603f984659e37dcac0d67469197a0 256 SUPERFAMILY SSF100950 73 233 1.07E-35 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_15820 521603f984659e37dcac0d67469197a0 256 SMART SM01134 72 233 1.9E-71 T 11-10-2018 BED32_15820 521603f984659e37dcac0d67469197a0 256 SUPERFAMILY SSF46785 4 64 1.16E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_15820 521603f984659e37dcac0d67469197a0 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BED32_05335 d60cd3d0ca9be168947781d9c0eda9df 281 Pfam PF15969 Intracellular sensor of Lambda phage, Abi component 1 273 1.2E-73 T 11-10-2018 IPR031894 Abi component, intracellular sensor of Lambda phage RexA BED32_06920 d60cd3d0ca9be168947781d9c0eda9df 281 Pfam PF15969 Intracellular sensor of Lambda phage, Abi component 1 273 1.2E-73 T 11-10-2018 IPR031894 Abi component, intracellular sensor of Lambda phage RexA BED32_16500 0ebd6d4085d2ad208a5122fed9285647 268 Gene3D G3DSA:3.40.50.300 9 266 4.9E-52 T 11-10-2018 BED32_16500 0ebd6d4085d2ad208a5122fed9285647 268 Pfam PF00005 ABC transporter 26 175 2.0E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_16500 0ebd6d4085d2ad208a5122fed9285647 268 SMART SM00382 35 223 9.4E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_16500 0ebd6d4085d2ad208a5122fed9285647 268 SUPERFAMILY SSF52540 23 237 1.43E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17705 ee4ced44e8f01db9aabd35cd85ff8bc1 115 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 21 106 4.6E-10 T 11-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like BED32_17705 ee4ced44e8f01db9aabd35cd85ff8bc1 115 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 14 113 5.0E-39 T 11-10-2018 BED32_17705 ee4ced44e8f01db9aabd35cd85ff8bc1 115 Gene3D G3DSA:1.20.58.1630 23 114 1.3E-10 T 11-10-2018 IPR038432 PulS/OutS-like superfamily BED32_06670 d9b4b5459365a619d13edecbb9251da6 166 ProDom PD033200 ENDOPEPTIDASE GENE LYSIS PROBABLE PHAGE PROTEASE 3.4.-.- HYDROLASE BACTERIOPHAGE CELL 30 159 0.003 T 11-10-2018 IPR016417 Spanin, inner membrane subunit, T7likevirus-type GO:0019076 BED32_06670 d9b4b5459365a619d13edecbb9251da6 166 Pfam PF10721 Protein of unknown function (DUF2514) 3 143 1.0E-9 T 11-10-2018 IPR019659 Protein of unknown function DUF2514 BED32_09910 0d5800f8e27ed4efac5e78cb07c5b28f 319 SUPERFAMILY SSF51735 15 149 4.49E-42 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_09910 0d5800f8e27ed4efac5e78cb07c5b28f 319 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 16 133 7.5E-27 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BED32_09910 0d5800f8e27ed4efac5e78cb07c5b28f 319 Gene3D G3DSA:3.40.50.720 12 132 1.6E-31 T 11-10-2018 BED32_09910 0d5800f8e27ed4efac5e78cb07c5b28f 319 SUPERFAMILY SSF55347 135 276 2.35E-46 T 11-10-2018 BED32_09910 0d5800f8e27ed4efac5e78cb07c5b28f 319 Gene3D G3DSA:3.30.360.10 133 319 1.3E-56 T 11-10-2018 BED32_18855 75bad2073fbbd863467c11540f919052 172 SUPERFAMILY SSF55718 41 136 2.35E-22 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily BED32_18855 75bad2073fbbd863467c11540f919052 172 Gene3D G3DSA:3.30.1050.10 43 138 7.2E-9 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily BED32_18855 75bad2073fbbd863467c11540f919052 172 Pfam PF02036 SCP-2 sterol transfer family 45 132 4.2E-20 T 11-10-2018 IPR003033 SCP2 sterol-binding domain BED32_18855 75bad2073fbbd863467c11540f919052 172 PIRSF PIRSF025550 1 172 4.6E-82 T 11-10-2018 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT BED32_22075 5fd519294817a2347b4b12862817fa94 986 Gene3D G3DSA:2.60.40.10 115 218 1.9E-8 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22075 5fd519294817a2347b4b12862817fa94 986 Gene3D G3DSA:2.60.40.10 234 330 5.0E-6 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22075 5fd519294817a2347b4b12862817fa94 986 Gene3D G3DSA:2.60.40.10 18 104 1.1E-5 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_22075 5fd519294817a2347b4b12862817fa94 986 SUPERFAMILY SSF49373 234 325 1.49E-7 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22075 5fd519294817a2347b4b12862817fa94 986 SUPERFAMILY SSF49373 20 100 3.14E-5 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_22075 5fd519294817a2347b4b12862817fa94 986 SUPERFAMILY SSF49373 121 212 2.16E-7 T 11-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments BED32_10900 625bd5aef644d7f089b59a00853a9cbf 116 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 3.1E-47 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related BED32_10900 625bd5aef644d7f089b59a00853a9cbf 116 Gene3D G3DSA:3.40.30.10 1 107 1.1E-33 T 11-10-2018 BED32_10900 625bd5aef644d7f089b59a00853a9cbf 116 SUPERFAMILY SSF52833 2 101 6.32E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_10900 625bd5aef644d7f089b59a00853a9cbf 116 Pfam PF00462 Glutaredoxin 16 80 9.3E-19 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BED32_10900 625bd5aef644d7f089b59a00853a9cbf 116 PIRSF PIRSF005894 1 107 4.4E-52 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 BED32_14610 cd7ef8a598d387fc4cfda69f360ca9f8 163 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 9 126 19.967 T 11-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 BED32_14610 cd7ef8a598d387fc4cfda69f360ca9f8 163 Gene3D G3DSA:1.20.58.1610 1 126 5.1E-43 T 11-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14610 cd7ef8a598d387fc4cfda69f360ca9f8 163 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 29 125 1.6E-31 T 11-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 99 117 2.3E-59 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 29 50 2.3E-59 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 4 27 2.3E-59 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 62 78 2.3E-59 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PRINTS PR01596 Gram-negative bacterial type III secretion SycE chaperone signature 81 99 2.3E-59 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 SUPERFAMILY SSF69635 3 129 3.92E-45 T 11-10-2018 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 Pfam PF05932 Tir chaperone protein (CesT) family 6 118 3.0E-24 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 Gene3D G3DSA:3.30.1460.10 1 130 1.7E-55 T 11-10-2018 BED32_00275 6d14a702f89d95c662ab81eca7e95eca 130 PIRSF PIRSF011271 1 120 1.1E-63 T 11-10-2018 IPR005416 Type III secretion chaperone SycE GO:0009405|GO:0050708 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 Gene3D G3DSA:3.20.20.70 25 266 1.4E-72 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 Pfam PF01207 Dihydrouridine synthase (Dus) 30 330 1.4E-93 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 27 341 6.8E-161 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 PIRSF PIRSF006621 21 341 4.7E-70 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 21 343 52.657 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 108 126 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 SUPERFAMILY SSF51395 27 334 7.33E-72 T 11-10-2018 BED32_02255 9f85b7ef98bbfb13e1304a10e2e48fd4 348 Gene3D G3DSA:1.20.120.1460 273 344 2.0E-21 T 11-10-2018 BED32_07480 6783bc1924666b0c9fe6248c0cadce69 525 Pfam PF00795 Carbon-nitrogen hydrolase 224 476 2.8E-36 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_07480 6783bc1924666b0c9fe6248c0cadce69 525 Gene3D G3DSA:3.60.110.10 214 483 1.6E-8 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_07480 6783bc1924666b0c9fe6248c0cadce69 525 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 10 496 24.305 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 BED32_07480 6783bc1924666b0c9fe6248c0cadce69 525 SUPERFAMILY SSF56317 217 491 9.55E-38 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_07480 6783bc1924666b0c9fe6248c0cadce69 525 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 63 458 6.9E-105 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 BED32_01725 8fae8d253a7eb782ca7c8454b2c8a54c 135 Gene3D G3DSA:3.30.300.20 35 133 3.5E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta BED32_01725 8fae8d253a7eb782ca7c8454b2c8a54c 135 Gene3D G3DSA:2.20.25.10 1 34 1.6E-21 T 11-10-2018 BED32_01725 8fae8d253a7eb782ca7c8454b2c8a54c 135 SUPERFAMILY SSF82784 1 131 3.93E-42 T 11-10-2018 IPR036102 OsmC/Ohr superfamily BED32_01725 8fae8d253a7eb782ca7c8454b2c8a54c 135 Pfam PF02566 OsmC-like protein 30 127 3.2E-19 T 11-10-2018 IPR003718 OsmC/Ohr family BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 163 180 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 19 38 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 119 140 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 39 61 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 141 162 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 62 80 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 PRINTS PR01549 Autoinducer synthesis protein signature 94 106 6.7E-61 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 ProSitePatterns PS00949 Autoinducer synthase family signature. 23 48 - T 11-10-2018 IPR018311 Autoinducer synthesis, conserved site KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 Pfam PF00765 Autoinducer synthase 8 188 2.5E-85 T 11-10-2018 IPR001690 Autoinducer synthase GO:0016740 KEGG: 00270+2.3.1.184|MetaCyc: PWY-6157 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 Gene3D G3DSA:3.40.630.30 1 211 2.9E-50 T 11-10-2018 BED32_13345 a6631fb1eb170af1be80c6bf34af59db 214 SUPERFAMILY SSF55729 1 209 6.62E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_06095 17815ce810006347676c1bd4c254418a 85 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 41 60 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 PRINTS PR01727 Prokaryotic integration host factor signature 53 66 1.1E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 PRINTS PR01727 Prokaryotic integration host factor signature 35 50 1.1E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 PRINTS PR01727 Prokaryotic integration host factor signature 69 83 1.1E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 Gene3D G3DSA:4.10.520.10 1 85 1.2E-33 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 Pfam PF00216 Bacterial DNA-binding protein 1 85 8.2E-30 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 SMART SM00411 1 85 2.5E-36 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06095 17815ce810006347676c1bd4c254418a 85 SUPERFAMILY SSF47729 1 85 3.53E-29 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_00695 86234878541b0e2841641b48f092b3bc 210 Hamap MF_01190 HTH-type transcriptional repressor FabR [fabR]. 1 209 52.469 T 11-10-2018 IPR023764 Transcriptional repressor HTH, FabR BED32_00695 86234878541b0e2841641b48f092b3bc 210 SUPERFAMILY SSF46689 3 77 2.32E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00695 86234878541b0e2841641b48f092b3bc 210 Gene3D G3DSA:1.10.10.60 2 52 1.8E-22 T 11-10-2018 BED32_00695 86234878541b0e2841641b48f092b3bc 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 58 2.4E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_00695 86234878541b0e2841641b48f092b3bc 210 Gene3D G3DSA:1.10.357.10 53 209 4.4E-43 T 11-10-2018 BED32_09010 02e7bbcc52816bd6fd60b287cfbd7c70 243 Gene3D G3DSA:1.10.1760.20 29 239 4.4E-52 T 11-10-2018 BED32_09010 02e7bbcc52816bd6fd60b287cfbd7c70 243 TIGRFAM TIGR00123 cbiM: cobalamin biosynthesis protein CbiM 29 237 2.8E-108 T 11-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 BED32_09010 02e7bbcc52816bd6fd60b287cfbd7c70 243 Hamap MF_01462 Cobalt transport protein CbiM [cbiM]. 29 241 27.737 T 11-10-2018 IPR018024 Cobalamin (vitamin B12) transport protein CbiM GO:0006824|GO:0009236|GO:0016021|GO:0043190 BED32_09010 02e7bbcc52816bd6fd60b287cfbd7c70 243 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 30 235 3.1E-52 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 SUPERFAMILY SSF51445 1 455 5.29E-159 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 288 302 2.2E-14 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 405 422 2.2E-14 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 429 441 2.2E-14 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 360 368 2.2E-14 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 PRINTS PR00131 Glycosyl hydrolase family 1 signature 384 395 2.2E-14 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 360 368 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 Gene3D G3DSA:3.20.20.80 3 459 4.5E-152 T 11-10-2018 BED32_16400 e4350ba5fa6d5ed9a31347c45eaa773f 461 Pfam PF00232 Glycosyl hydrolase family 1 2 460 3.1E-136 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 Gene3D G3DSA:3.40.50.300 8 281 3.7E-67 T 11-10-2018 BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 SMART SM00382 39 226 3.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 Pfam PF02687 FtsX-like permease family 565 653 5.9E-10 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 Pfam PF00005 ABC transporter 30 178 1.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 Pfam PF12704 MacB-like periplasmic core domain 284 503 1.8E-39 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_15380 1fe9d8a141e7ce1e652b72b7379ac355 660 SUPERFAMILY SSF52540 10 232 1.24E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Gene3D G3DSA:3.30.1360.30 271 420 2.7E-199 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 SUPERFAMILY SSF50249 1 105 1.33E-34 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 1 584 33.775 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 SUPERFAMILY SSF55681 108 583 3.13E-105 T 11-10-2018 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Gene3D G3DSA:3.30.930.10 118 578 2.7E-199 T 11-10-2018 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 584 2.1E-276 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 3.0E-109 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 3.2E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 3.2E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 3.2E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 3.2E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Pfam PF02938 GAD domain 307 406 4.2E-30 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Gene3D G3DSA:2.40.50.140 1 106 8.0E-36 T 11-10-2018 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 1.3E-17 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 BED32_10165 63f99e6b919e51dc92ff798276c61802 598 SUPERFAMILY SSF55261 288 419 6.54E-46 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 BED32_19120 4d46e05019b0046a2fbdc10ed278764e 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 203 4.4E-27 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BED32_19120 4d46e05019b0046a2fbdc10ed278764e 206 Gene3D G3DSA:3.10.50.40 68 206 2.9E-50 T 11-10-2018 BED32_19120 4d46e05019b0046a2fbdc10ed278764e 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 3 108 1.3E-22 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BED32_19120 4d46e05019b0046a2fbdc10ed278764e 206 SUPERFAMILY SSF54534 8 205 5.5E-55 T 11-10-2018 BED32_19120 4d46e05019b0046a2fbdc10ed278764e 206 Gene3D G3DSA:1.10.287.460 5 67 4.0E-18 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 Pfam PF01266 FAD dependent oxidoreductase 2 397 6.4E-75 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 410 51.986 T 11-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 SUPERFAMILY SSF51905 1 416 1.42E-54 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 SUPERFAMILY SSF54373 269 359 3.14E-17 T 11-10-2018 BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 Gene3D G3DSA:3.30.9.10 134 361 2.1E-50 T 11-10-2018 BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 Gene3D G3DSA:3.50.50.60 1 79 7.7E-14 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_12305 42a64e6737c3c3f1387998a008bc622b 434 Gene3D G3DSA:3.50.50.60 106 403 2.1E-50 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_20075 f9ae0e4b2836846582d06d87c3a80af7 296 SUPERFAMILY SSF103481 32 128 4.58E-8 T 11-10-2018 BED32_20075 f9ae0e4b2836846582d06d87c3a80af7 296 SUPERFAMILY SSF103481 196 275 1.31E-8 T 11-10-2018 BED32_20075 f9ae0e4b2836846582d06d87c3a80af7 296 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 8 270 1.5E-85 T 11-10-2018 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 BED32_20075 f9ae0e4b2836846582d06d87c3a80af7 296 Pfam PF00892 EamA-like transporter family 2 126 3.8E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_20075 f9ae0e4b2836846582d06d87c3a80af7 296 Pfam PF00892 EamA-like transporter family 135 271 5.7E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 7 255 5.2E-76 T 11-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 Pfam PF01311 Bacterial export proteins, family 1 11 245 7.1E-51 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 1.0E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 19 40 1.0E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 1.0E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_00380 200f7d5ea475b4108c14c120ab15b4fd 261 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 79 98 1.0E-30 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 129 6.9E-25 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 Pfam PF00107 Zinc-binding dehydrogenase 200 327 7.8E-24 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 SUPERFAMILY SSF50129 2 190 6.7E-74 T 11-10-2018 IPR011032 GroES-like superfamily BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 Gene3D G3DSA:3.40.50.720 177 315 6.7E-156 T 11-10-2018 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 SMART SM00829 13 370 4.3E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 SUPERFAMILY SSF50129 321 372 2.26E-12 T 11-10-2018 IPR011032 GroES-like superfamily BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 SUPERFAMILY SSF51735 163 337 4.91E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 1.2E-224 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 BED32_08410 4c5f7d68ef979738a9a73569f3831343 384 Gene3D G3DSA:3.90.180.10 9 367 6.7E-156 T 11-10-2018 BED32_12455 b4e260d7bf39bdd69191ce18ecb18aad 175 Pfam PF10634 Fe2+ transport protein 25 173 1.7E-70 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type BED32_12455 b4e260d7bf39bdd69191ce18ecb18aad 175 Gene3D G3DSA:2.60.40.2480 23 175 2.7E-77 T 11-10-2018 IPR038482 Periplasmic metal-binding protein tp34-type superfamily BED32_12455 b4e260d7bf39bdd69191ce18ecb18aad 175 PIRSF PIRSF017018 1 175 3.2E-73 T 11-10-2018 IPR018470 Periplasmic metal-binding protein Tp34-type BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 Hamap MF_00465 S-adenosylmethionine decarboxylase proenzyme [speD]. 1 264 177.744 T 11-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 Gene3D G3DSA:3.60.90.10 96 185 1.2E-5 T 11-10-2018 BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 SUPERFAMILY SSF56276 43 173 4.32E-23 T 11-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 PIRSF PIRSF001356 1 263 1.9E-157 T 11-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 Pfam PF02675 S-adenosylmethionine decarboxylase 33 169 1.6E-29 T 11-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BED32_17715 ceebdf7343ea2fde99f4a37ba832852f 264 TIGRFAM TIGR03331 SAM_DCase_Eco: S-adenosylmethionine decarboxylase proenzyme 3 261 1.8E-148 T 11-10-2018 IPR009165 S-adenosylmethionine decarboxylase, bacterial GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 320 2.1E-130 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 Pfam PF00152 tRNA synthetases class II (D, K and N) 14 321 1.1E-46 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 Gene3D G3DSA:3.30.930.10 1 325 1.2E-123 T 11-10-2018 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 31 41 4.5E-6 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 PRINTS PR00982 Lysyl-tRNA synthetase signature 99 116 4.5E-6 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 2 325 56.727 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 BED32_19285 5322b4d6c2a234d4e47391c6d859aab5 325 SUPERFAMILY SSF55681 13 322 6.37E-84 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Pfam PF00708 Acylphosphatase 2 80 1.4E-14 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 SUPERFAMILY SSF55821 167 384 4.88E-46 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Gene3D G3DSA:3.30.420.350 484 735 5.2E-127 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Gene3D G3DSA:3.30.110.120 246 366 6.8E-139 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 1 747 1.1E-257 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 SUPERFAMILY SSF53067 660 724 5.51E-5 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Gene3D G3DSA:3.90.870.50 2 357 6.8E-139 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Pfam PF01300 Telomere recombination 203 379 9.4E-48 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Gene3D G3DSA:3.30.420.360 378 747 5.2E-127 T 11-10-2018 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 SUPERFAMILY SSF54975 2 83 1.0E-17 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Pfam PF07503 HypF finger 100 133 1.1E-17 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 Pfam PF07503 HypF finger 150 182 2.7E-16 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 ProSitePatterns PS00150 Acylphosphatase signature 1. 3 13 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 BED32_04055 dd7723e9cf7b22aa542c12ec2b45b352 751 PIRSF PIRSF006256 1 751 8.0E-271 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 333 3.1E-127 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 Gene3D G3DSA:3.30.360.10 153 312 1.2E-127 T 11-10-2018 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 Gene3D G3DSA:3.40.50.720 6 330 1.2E-127 T 11-10-2018 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 11-10-2018 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 SMART SM00859 3 146 2.7E-51 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 SUPERFAMILY SSF51735 2 183 5.0E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 163 311 1.6E-13 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 334 40.079 T 11-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 SUPERFAMILY SSF55347 154 308 2.15E-50 T 11-10-2018 BED32_00615 158554a99203fbcb15de1e772b1fbdf7 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 5 146 9.1E-34 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_15385 14d64789a842be9c578021681a44f899 281 TIGRFAM TIGR01138 cysM: cysteine synthase B 1 280 3.6E-144 T 11-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BED32_15385 14d64789a842be9c578021681a44f899 281 Gene3D G3DSA:3.40.50.1100 23 128 5.7E-108 T 11-10-2018 BED32_15385 14d64789a842be9c578021681a44f899 281 SUPERFAMILY SSF53686 1 277 1.23E-86 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_15385 14d64789a842be9c578021681a44f899 281 TIGRFAM TIGR01136 cysKM: cysteine synthase 1 280 2.0E-117 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 BED32_15385 14d64789a842be9c578021681a44f899 281 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 1 269 6.6E-63 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_15385 14d64789a842be9c578021681a44f899 281 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 18 36 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 BED32_15385 14d64789a842be9c578021681a44f899 281 Gene3D G3DSA:3.40.50.1100 1 276 5.7E-108 T 11-10-2018 BED32_10725 8cc1aeed02015796b4e0a58a958ed740 114 Hamap MF_01869 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE [arnE]. 2 114 29.985 T 11-10-2018 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE BED32_10725 8cc1aeed02015796b4e0a58a958ed740 114 Pfam PF00892 EamA-like transporter family 13 111 1.1E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_10725 8cc1aeed02015796b4e0a58a958ed740 114 SUPERFAMILY SSF103481 33 113 1.7E-13 T 11-10-2018 BED32_10725 8cc1aeed02015796b4e0a58a958ed740 114 Gene3D G3DSA:1.10.3730.20 1 113 1.8E-6 T 11-10-2018 BED32_07210 ef425cab12ed05f22031db330c6d4650 268 Pfam PF00589 Phage integrase family 129 266 1.5E-18 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_07210 ef425cab12ed05f22031db330c6d4650 268 Gene3D G3DSA:1.10.443.10 123 267 1.0E-14 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_07210 ef425cab12ed05f22031db330c6d4650 268 SUPERFAMILY SSF56349 17 266 1.15E-51 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_07210 ef425cab12ed05f22031db330c6d4650 268 Gene3D G3DSA:1.10.150.130 9 122 5.8E-31 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_01810 ecc31f7712faa8c2eee1a8e6b70bc0da 72 Hamap MF_00715 Protein SlyX [slyX]. 5 72 16.74 T 11-10-2018 IPR007236 SlyX BED32_01810 ecc31f7712faa8c2eee1a8e6b70bc0da 72 Pfam PF04102 SlyX 7 72 2.7E-24 T 11-10-2018 IPR007236 SlyX BED32_00490 ebbcacc403e9a9164f8988d6d85e5035 319 Gene3D G3DSA:3.40.50.1100 51 147 4.0E-111 T 11-10-2018 BED32_00490 ebbcacc403e9a9164f8988d6d85e5035 319 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 43 56 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BED32_00490 ebbcacc403e9a9164f8988d6d85e5035 319 Gene3D G3DSA:3.40.50.1100 8 308 4.0E-111 T 11-10-2018 BED32_00490 ebbcacc403e9a9164f8988d6d85e5035 319 SUPERFAMILY SSF53686 6 308 1.2E-93 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_00490 ebbcacc403e9a9164f8988d6d85e5035 319 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 305 1.9E-84 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_00340 ec7f41e66e955d41814327af271c40f3 67 Gene3D G3DSA:1.20.5.420 2 66 1.2E-38 T 11-10-2018 BED32_00340 ec7f41e66e955d41814327af271c40f3 67 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 1 64 1.5E-23 T 11-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 BED32_00340 ec7f41e66e955d41814327af271c40f3 67 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 1 66 6.1E-28 T 11-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 BED32_01880 77bb53d567cbe5d67739fdf4c0ce8dac 201 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 6 201 34.167 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01880 77bb53d567cbe5d67739fdf4c0ce8dac 201 Pfam PF00573 Ribosomal protein L4/L1 family 13 198 6.4E-64 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 BED32_01880 77bb53d567cbe5d67739fdf4c0ce8dac 201 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 13 198 7.4E-75 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01880 77bb53d567cbe5d67739fdf4c0ce8dac 201 Gene3D G3DSA:3.40.1370.10 1 201 7.2E-69 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01880 77bb53d567cbe5d67739fdf4c0ce8dac 201 SUPERFAMILY SSF52166 9 200 8.5E-73 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 PRINTS PR00969 Pili chaperone signature 21 30 4.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 PRINTS PR00969 Pili chaperone signature 164 179 4.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 PRINTS PR00969 Pili chaperone signature 98 115 4.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 PRINTS PR00969 Pili chaperone signature 70 91 4.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 PRINTS PR00969 Pili chaperone signature 125 140 4.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 Gene3D G3DSA:2.60.40.10 147 245 1.4E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 Gene3D G3DSA:2.60.40.10 22 144 4.3E-41 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 SUPERFAMILY SSF49584 137 237 9.55E-13 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 169 236 3.1E-11 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 97 114 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 SUPERFAMILY SSF49354 15 143 3.92E-40 T 11-10-2018 IPR008962 PapD-like superfamily BED32_09330 f7658cd5d3914242c2f58a75c2b6553b 246 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 20 143 6.5E-42 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_12570 7efe3c3a94833cf5447c0b7331182519 254 Pfam PF08448 PAS fold 22 129 4.6E-9 T 11-10-2018 IPR013656 PAS fold-4 BED32_12570 7efe3c3a94833cf5447c0b7331182519 254 Gene3D G3DSA:1.10.10.10 151 216 5.7E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_12570 7efe3c3a94833cf5447c0b7331182519 254 SUPERFAMILY SSF46894 142 217 5.1E-10 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_02260 4b6d0685bfc40cc3430e26a11927b05c 72 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 64 7.4E-27 T 11-10-2018 IPR014318 Phage shock protein, PspG BED32_02260 4b6d0685bfc40cc3430e26a11927b05c 72 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 3 65 1.0E-28 T 11-10-2018 IPR014318 Phage shock protein, PspG BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 Hamap MF_00020 Acetate kinase [ackA]. 1 397 163.928 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 Hamap MF_01881 Propionate kinase [tdcD]. 1 402 77.69 T 11-10-2018 IPR024917 Propionate kinase KEGG: 00640+2.7.2.15|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 Gene3D G3DSA:3.30.420.40 4 191 6.3E-71 T 11-10-2018 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 7 18 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 7 18 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 199 220 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 374 386 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 169 182 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 296 309 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PRINTS PR00471 Acetate kinase family signature 318 334 1.2E-46 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 PIRSF PIRSF000722 3 397 1.3E-136 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 TIGRFAM TIGR00016 ackA: acetate kinase 6 392 7.1E-154 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 SUPERFAMILY SSF53067 6 191 1.12E-62 T 11-10-2018 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 Gene3D G3DSA:3.30.420.40 192 401 7.4E-79 T 11-10-2018 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 Pfam PF00871 Acetokinase family 7 386 1.5E-148 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 199 216 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 BED32_19400 a788344c6c67eb8187d1bd7ebbee83b6 406 SUPERFAMILY SSF53067 153 392 8.98E-84 T 11-10-2018 BED32_03160 2fa9da37f4331147699376d437f34408 389 Gene3D G3DSA:2.60.40.3310 34 221 4.4E-11 T 11-10-2018 BED32_03160 2fa9da37f4331147699376d437f34408 389 Gene3D G3DSA:2.60.40.1090 222 388 1.4E-23 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_03160 2fa9da37f4331147699376d437f34408 389 SUPERFAMILY SSF49401 219 388 2.49E-15 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 28.136 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 184 1.6E-54 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 Gene3D G3DSA:3.90.950.10 2 193 4.7E-58 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 PIRSF PIRSF006305 1 192 1.4E-38 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 SUPERFAMILY SSF52972 1 186 4.19E-56 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_13200 d554494646dc3f7d7371fbbadb5410e8 193 Pfam PF02545 Maf-like protein 3 185 2.3E-42 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 Pfam PF01368 DHH family 72 177 6.3E-9 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 Pfam PF02272 DHHA1 domain 320 450 4.0E-27 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 Gene3D G3DSA:3.10.310.30 326 456 1.1E-30 T 11-10-2018 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 Gene3D G3DSA:2.40.50.460 457 574 2.2E-7 T 11-10-2018 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 SUPERFAMILY SSF64182 47 464 1.57E-116 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 21 571 2.0E-161 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 BED32_17405 8bdf8d5b1b024fd8a12f7fa6cd3743f5 575 Gene3D G3DSA:3.90.1640.30 46 324 8.1E-90 T 11-10-2018 BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 257 7.6E-41 T 11-10-2018 IPR000150 Cof family GO:0016787 BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 Gene3D G3DSA:3.40.50.1000 5 258 7.1E-58 T 11-10-2018 IPR023214 HAD superfamily BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 SUPERFAMILY SSF56784 1 262 6.84E-56 T 11-10-2018 IPR036412 HAD-like superfamily BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 11-10-2018 BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 255 2.9E-44 T 11-10-2018 BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 231 1.1E-20 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 BED32_01295 6a20086b5a8bd6b87a897ec130edcbfd 265 Gene3D G3DSA:3.30.1240.10 82 188 7.1E-58 T 11-10-2018 BED32_10995 914b5907a07c9c235334b600ab5da57c 202 Pfam PF00043 Glutathione S-transferase, C-terminal domain 101 189 2.3E-17 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal BED32_10995 914b5907a07c9c235334b600ab5da57c 202 Gene3D G3DSA:3.40.30.10 3 193 3.0E-78 T 11-10-2018 BED32_10995 914b5907a07c9c235334b600ab5da57c 202 SUPERFAMILY SSF47616 84 199 1.53E-28 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_10995 914b5907a07c9c235334b600ab5da57c 202 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 5.5E-12 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_10995 914b5907a07c9c235334b600ab5da57c 202 SUPERFAMILY SSF52833 1 79 1.51E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_10995 914b5907a07c9c235334b600ab5da57c 202 Gene3D G3DSA:1.20.1050.10 82 188 3.0E-78 T 11-10-2018 BED32_17730 e346f44bc5c33e5d70d288ceecb1b941 120 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 119 30.309 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 BED32_17730 e346f44bc5c33e5d70d288ceecb1b941 120 PIRSF PIRSF006287 1 120 4.6E-51 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 BED32_17730 e346f44bc5c33e5d70d288ceecb1b941 120 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 117 1.3E-45 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 BED32_17730 e346f44bc5c33e5d70d288ceecb1b941 120 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 117 8.0E-57 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 BED32_13150 d1899506e9d867c9f06da638d4bee676 341 Pfam PF02618 YceG-like family 44 329 8.0E-83 T 11-10-2018 IPR003770 Endolytic murein transglycosylase BED32_13150 d1899506e9d867c9f06da638d4bee676 341 Gene3D G3DSA:3.30.160.60 72 110 1.8E-23 T 11-10-2018 BED32_13150 d1899506e9d867c9f06da638d4bee676 341 Gene3D G3DSA:3.30.160.60 303 341 8.1E-21 T 11-10-2018 BED32_13150 d1899506e9d867c9f06da638d4bee676 341 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 9 333 33.514 T 11-10-2018 IPR003770 Endolytic murein transglycosylase BED32_13150 d1899506e9d867c9f06da638d4bee676 341 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 17 337 4.8E-122 T 11-10-2018 IPR003770 Endolytic murein transglycosylase BED32_13125 cd859f2a84f101874e49904469569f60 271 Gene3D G3DSA:2.40.70.10 159 270 7.2E-9 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily BED32_13125 cd859f2a84f101874e49904469569f60 271 Gene3D G3DSA:2.40.70.10 1 140 9.3E-8 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily BED32_13125 cd859f2a84f101874e49904469569f60 271 SUPERFAMILY SSF50630 142 259 8.92E-8 T 11-10-2018 IPR021109 Aspartic peptidase domain superfamily BED32_13125 cd859f2a84f101874e49904469569f60 271 Pfam PF13650 Aspartyl protease 15 114 3.8E-5 T 11-10-2018 BED32_13125 cd859f2a84f101874e49904469569f60 271 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 172 183 - T 11-10-2018 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 3.6E-92 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 40.962 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 SUPERFAMILY SSF50447 1 208 1.15E-79 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 Gene3D G3DSA:2.40.50.620 32 94 6.1E-15 T 11-10-2018 BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 Pfam PF00297 Ribosomal protein L3 94 182 2.9E-12 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01875 a0390d77be1154b924ab7b5a15831ca0 209 Gene3D G3DSA:2.40.30.10 128 209 4.6E-18 T 11-10-2018 BED32_13030 fd9e24f62c5e30e11321a969417a40da 278 SUPERFAMILY SSF52467 41 267 3.27E-74 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_13030 fd9e24f62c5e30e11321a969417a40da 278 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 39 269 59.131 T 11-10-2018 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 Reactome: R-HSA-2151201 BED32_13030 fd9e24f62c5e30e11321a969417a40da 278 Gene3D G3DSA:3.30.1600.10 55 191 1.7E-81 T 11-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily BED32_13030 fd9e24f62c5e30e11321a969417a40da 278 Gene3D G3DSA:3.40.50.1220 41 261 1.7E-81 T 11-10-2018 BED32_13030 fd9e24f62c5e30e11321a969417a40da 278 Pfam PF02146 Sir2 family 46 219 5.4E-51 T 11-10-2018 IPR003000 Sirtuin family GO:0070403 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 Pfam PF00293 NUDIX domain 4 122 7.4E-18 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 PRINTS PR00502 NUDIX hydrolase family signature 44 59 1.8E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 PRINTS PR00502 NUDIX hydrolase family signature 30 44 1.8E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 SUPERFAMILY SSF55811 3 125 6.23E-33 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 Gene3D G3DSA:3.90.79.10 1 128 9.3E-38 T 11-10-2018 BED32_12190 e0b37acd204b43b6f4c0dbbda0d9da2b 128 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 362 3.1E-30 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 SUPERFAMILY SSF53901 216 405 2.34E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 Gene3D G3DSA:3.40.47.10 261 407 2.6E-51 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 SMART SM00825 Beta-ketoacyl synthase 4 407 3.4E-13 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 247 4.9E-41 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 Gene3D G3DSA:3.40.47.10 6 260 5.0E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_14880 a7a30881d09c65cd14ac7d8d6581240d 407 SUPERFAMILY SSF53901 1 254 6.05E-61 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_01475 f2f6fc4cd8ff1c6cdd5eac76d0dab9ca 698 Gene3D G3DSA:3.20.20.80 144 688 1.4E-124 T 11-10-2018 BED32_01475 f2f6fc4cd8ff1c6cdd5eac76d0dab9ca 698 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 103 690 3.6E-242 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BED32_01475 f2f6fc4cd8ff1c6cdd5eac76d0dab9ca 698 SUPERFAMILY SSF51445 145 687 2.53E-148 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_01475 f2f6fc4cd8ff1c6cdd5eac76d0dab9ca 698 Pfam PF02446 4-alpha-glucanotransferase 151 669 6.3E-132 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 84 7.8E-28 T 11-10-2018 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 Gene3D G3DSA:1.20.1540.10 92 271 4.2E-59 T 11-10-2018 IPR035952 Rhomboid-like superfamily BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 Gene3D G3DSA:3.30.70.2350 1 68 1.2E-21 T 11-10-2018 IPR038236 GlpG peptidase, N-terminal domain superfamily BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 Pfam PF01694 Rhomboid family 132 271 1.2E-28 T 11-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 Hamap MF_01594 Rhomboid protease GlpG [glpG]. 1 275 48.747 T 11-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 271 1.1E-121 T 11-10-2018 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 BED32_01450 531b48ea8474dc4ddf216eb9138dc3eb 278 SUPERFAMILY SSF144091 94 271 1.14E-43 T 11-10-2018 BED32_19025 457b25136e1ebb5b5b1c7c7f0e5f508c 115 Gene3D G3DSA:1.10.10.10 2 74 1.0E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_19025 457b25136e1ebb5b5b1c7c7f0e5f508c 115 SUPERFAMILY SSF46955 3 73 2.11E-23 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_19025 457b25136e1ebb5b5b1c7c7f0e5f508c 115 Pfam PF02316 Mu DNA-binding domain 9 61 1.9E-14 T 11-10-2018 IPR003314 Mu-type HTH domain GO:0003677 BED32_19025 457b25136e1ebb5b5b1c7c7f0e5f508c 115 ProDom PD060594 TRANSCRIPTION YFED YFEC DNA-BINDING REGULATION NEGATIVE REGULATOR STY2653 ECS3274 STY2652 10 112 0.009 T 11-10-2018 IPR010749 Protein of unknown function DUF1323 BED32_03270 50c1704af6fac7db6d0f60b58914e061 328 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 8 312 2.0E-121 T 11-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 BED32_03270 50c1704af6fac7db6d0f60b58914e061 328 Pfam PF03741 Integral membrane protein TerC family 81 283 1.3E-56 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BED32_16125 980b96291ab41bbe75a1be426495bdee 126 Pfam PF00874 PRD domain 28 110 2.2E-5 T 11-10-2018 IPR011608 PRD domain GO:0006355 BED32_16125 980b96291ab41bbe75a1be426495bdee 126 SUPERFAMILY SSF63520 19 115 2.35E-8 T 11-10-2018 IPR036634 PRD domain superfamily GO:0006355 BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 1 443 58.148 T 11-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 Gene3D G3DSA:3.90.230.10 161 443 2.2E-76 T 11-10-2018 BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 SUPERFAMILY SSF55920 163 439 1.7E-53 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 335 347 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 Pfam PF00557 Metallopeptidase family M24 168 430 1.2E-41 T 11-10-2018 IPR000994 Peptidase M24 BED32_19965 67e6f1a1621adac2f11b90dd88574fda 443 Gene3D G3DSA:3.40.350.10 1 159 7.6E-63 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 421 2.7E-153 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 11 427 35.703 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 Gene3D G3DSA:3.65.10.10 21 224 2.2E-159 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 SUPERFAMILY SSF55205 4 424 3.27E-145 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 Gene3D G3DSA:3.65.10.10 242 421 2.2E-159 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 15 425 1.6E-142 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 ProSitePatterns PS00104 EPSP synthase signature 1. 91 105 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 PIRSF PIRSF000505 2 428 2.3E-154 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BED32_13670 4c5f6ad935e04867bf39aa300cc2a2d2 428 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 BED32_11535 c02f2bd8dee66972661ff01550fc446c 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 26.487 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 BED32_11535 c02f2bd8dee66972661ff01550fc446c 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 1.4E-60 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_11535 c02f2bd8dee66972661ff01550fc446c 193 PIRSF PIRSF006102 1 193 2.1E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_11535 c02f2bd8dee66972661ff01550fc446c 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 8.4E-91 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 BED32_06825 b7f3284c996390c5a9b1d3ab970a2b92 387 SUPERFAMILY SSF56349 57 358 5.0E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_06825 b7f3284c996390c5a9b1d3ab970a2b92 387 Gene3D G3DSA:1.10.443.10 184 368 1.7E-36 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_06825 b7f3284c996390c5a9b1d3ab970a2b92 387 Gene3D G3DSA:1.10.150.130 55 183 6.9E-7 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_06825 b7f3284c996390c5a9b1d3ab970a2b92 387 Pfam PF00589 Phage integrase family 185 353 1.9E-42 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_12710 08e7158ac0b2262ba78728591b50e894 287 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 16 285 3.7E-111 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BED32_12710 08e7158ac0b2262ba78728591b50e894 287 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 15 285 7.6E-142 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 104 12.999 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 SUPERFAMILY SSF54211 1 103 1.47E-29 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 Gene3D G3DSA:3.30.230.10 1 108 1.0E-40 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 103 3.5E-34 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 6 87 3.0E-41 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 Pfam PF00825 Ribonuclease P 1 100 6.6E-30 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 BED32_21600 e79ca192ca1f6250799d8d5bbe75929b 108 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 45 59 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 Pfam PF07514 Putative helicase 35 246 8.4E-43 T 11-10-2018 IPR011119 Uncharacterised domain, helicase/relaxase, putative BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 TIGRFAM TIGR03760 ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class 34 249 5.2E-84 T 11-10-2018 IPR022391 Integrating conjugative element relaxase, PFGI-1 class BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 Gene3D G3DSA:1.10.10.10 291 357 2.4E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 SUPERFAMILY SSF46785 288 408 5.17E-29 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 Gene3D G3DSA:2.40.10.200 307 403 2.4E-25 T 11-10-2018 BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 Pfam PF07515 Putative conjugal transfer nickase/helicase TraI C-term 291 396 7.9E-21 T 11-10-2018 IPR011093 Putative conjugal transfer nickase/helicase TraI, C-terminal BED32_04250 1d25d99af0e28b8663badd90bf1e4e2f 410 Gene3D G3DSA:1.10.3210.40 38 259 3.5E-17 T 11-10-2018 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 177 405 1.2E-81 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 407 3.3E-189 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 SUPERFAMILY SSF51230 2 91 3.14E-24 T 11-10-2018 IPR011053 Single hybrid motif BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Pfam PF02817 e3 binding domain 114 146 1.2E-11 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 SUPERFAMILY SSF52777 177 406 6.23E-89 T 11-10-2018 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Gene3D G3DSA:3.30.559.10 175 407 1.7E-97 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Gene3D G3DSA:2.40.50.100 2 79 1.1E-23 T 11-10-2018 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Gene3D G3DSA:4.10.320.10 103 152 1.8E-21 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 SUPERFAMILY SSF47005 107 149 1.29E-10 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 BED32_07765 8ef744863a8fa2819fbc7d769f0b8825 407 Pfam PF00364 Biotin-requiring enzyme 5 77 2.6E-19 T 11-10-2018 IPR000089 Biotin/lipoyl attachment BED32_01915 8b2fd8a4265bcf8859aa63a35e3fcda4 63 Gene3D G3DSA:1.10.287.310 1 63 8.5E-30 T 11-10-2018 BED32_01915 8b2fd8a4265bcf8859aa63a35e3fcda4 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.366 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01915 8b2fd8a4265bcf8859aa63a35e3fcda4 63 SUPERFAMILY SSF46561 1 61 1.03E-21 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01915 8b2fd8a4265bcf8859aa63a35e3fcda4 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 3.4E-22 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01915 8b2fd8a4265bcf8859aa63a35e3fcda4 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.3E-22 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 15 208 27.513 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 20 206 6.2E-95 T 11-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 Pfam PF01728 FtsJ-like methyltransferase 31 206 1.1E-58 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 Gene3D G3DSA:3.40.50.150 30 208 2.3E-61 T 11-10-2018 BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 SUPERFAMILY SSF53335 31 207 3.14E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_18970 440270500cc89eb3ab6b4afef695a4ce 209 PIRSF PIRSF005461 1 209 9.1E-82 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 PIRSF PIRSF006614 8 151 3.0E-65 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 Pfam PF02142 MGS-like domain 26 118 1.1E-18 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 3.8E-66 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 32.795 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 Gene3D G3DSA:3.40.50.1380 1 152 1.1E-68 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 SUPERFAMILY SSF52335 6 151 1.01E-57 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 72 - T 11-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 BED32_13440 c651eb83fd6d4089b6b646dc1f213a34 152 SMART SM00851 25 118 8.4E-27 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 9 92 5.0E-41 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 SUPERFAMILY SSF56214 3 125 2.49E-30 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 2 126 3.1E-52 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 Gene3D G3DSA:3.90.470.20 1 126 2.4E-39 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 5 122 4.7E-25 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 4 126 26.251 T 11-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BED32_16225 d0cda576a9123e788a5a20fdc7f5e81f 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 3 126 2.1E-37 T 11-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 BED32_07870 daff846b8b2a6d81a0dd5800f4d2e3dd 310 SUPERFAMILY SSF161111 10 209 1.7E-63 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_07870 daff846b8b2a6d81a0dd5800f4d2e3dd 310 SUPERFAMILY SSF160240 212 287 2.35E-9 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 BED32_07870 daff846b8b2a6d81a0dd5800f4d2e3dd 310 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 288 2.1E-96 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_07870 daff846b8b2a6d81a0dd5800f4d2e3dd 310 Gene3D G3DSA:1.20.1510.10 12 208 1.2E-51 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily BED32_07870 daff846b8b2a6d81a0dd5800f4d2e3dd 310 Pfam PF01545 Cation efflux family 16 208 5.5E-54 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_13935 8a8a4fc92e6add5b56dcc0078ea892af 223 Gene3D G3DSA:1.20.144.10 130 223 6.7E-8 T 11-10-2018 BED32_13935 8a8a4fc92e6add5b56dcc0078ea892af 223 SUPERFAMILY SSF48317 6 212 1.31E-11 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BED32_13935 8a8a4fc92e6add5b56dcc0078ea892af 223 Pfam PF01569 PAP2 superfamily 91 212 7.9E-8 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 Gene3D G3DSA:3.40.30.10 104 186 1.2E-22 T 11-10-2018 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 PIRSF PIRSF000216 18 187 4.5E-52 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 45 186 3.8E-50 T 11-10-2018 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 Gene3D G3DSA:1.10.10.1590 33 103 7.2E-18 T 11-10-2018 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 43 186 1.0E-51 T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 144 162 - T 11-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14595 ef78086e29a0633f13bb47ea62d64473 187 SUPERFAMILY SSF52833 36 186 1.45E-48 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_04780 823e36ea76e0be8abef4d614d00355ca 115 Gene3D G3DSA:1.10.10.10 3 111 4.9E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04780 823e36ea76e0be8abef4d614d00355ca 115 Pfam PF12840 Helix-turn-helix domain 15 65 8.3E-9 T 11-10-2018 BED32_04780 823e36ea76e0be8abef4d614d00355ca 115 SUPERFAMILY SSF46785 3 92 1.38E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04780 823e36ea76e0be8abef4d614d00355ca 115 SMART SM00418 15 92 3.1E-11 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 13 382 3.6E-174 T 11-10-2018 IPR014180 Sugar isomerase, AgaS GO:0016853 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 Gene3D G3DSA:3.40.50.10490 2 197 2.3E-59 T 11-10-2018 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 SUPERFAMILY SSF53697 15 373 8.79E-52 T 11-10-2018 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 Gene3D G3DSA:3.40.50.10490 198 376 2.2E-71 T 11-10-2018 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 Pfam PF01380 SIS domain 225 351 4.6E-16 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_10065 09008166ca23efda24e62066f80b8f3f 384 Pfam PF01380 SIS domain 49 187 1.0E-24 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_01595 3bdf90ba1af5fc02c169025f7ac79d18 290 SUPERFAMILY SSF53067 44 163 5.83E-5 T 11-10-2018 BED32_01595 3bdf90ba1af5fc02c169025f7ac79d18 290 Gene3D G3DSA:3.30.420.40 8 166 3.4E-11 T 11-10-2018 BED32_01595 3bdf90ba1af5fc02c169025f7ac79d18 290 Pfam PF11104 Type IV pilus assembly protein PilM; 9 165 7.6E-17 T 11-10-2018 IPR005883 Type IV pilus assembly protein PilM BED32_01595 3bdf90ba1af5fc02c169025f7ac79d18 290 Gene3D G3DSA:3.30.1490.300 82 135 3.4E-11 T 11-10-2018 BED32_09930 f8fc276f3f5b17a4a7df86a039071ea6 388 Gene3D G3DSA:1.20.1250.20 199 377 2.5E-15 T 11-10-2018 BED32_09930 f8fc276f3f5b17a4a7df86a039071ea6 388 Gene3D G3DSA:1.20.1250.20 2 198 2.2E-29 T 11-10-2018 BED32_09930 f8fc276f3f5b17a4a7df86a039071ea6 388 Pfam PF07690 Major Facilitator Superfamily 9 339 1.0E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_09930 f8fc276f3f5b17a4a7df86a039071ea6 388 SUPERFAMILY SSF103473 3 379 6.41E-53 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 SMART SM00382 28 231 3.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 8.6E-122 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 215 236 6.3E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 Pfam PF00005 ABC transporter 20 166 5.2E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 SUPERFAMILY SSF52540 4 236 2.37E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02930 886d86f55aa56218bba10f65a081d4bc 241 Gene3D G3DSA:3.40.50.300 2 241 4.6E-71 T 11-10-2018 BED32_08905 b0674a8fc01620c20050baf1dea50d7c 113 PIRSF PIRSF011503 1 113 1.5E-36 T 11-10-2018 IPR009192 Diol/glycerol dehydratase reactivating factor, small subunit BED32_08905 b0674a8fc01620c20050baf1dea50d7c 113 Pfam PF02288 Dehydratase medium subunit 7 113 2.1E-32 T 11-10-2018 IPR003208 Diol/glycerol dehydratase/dehydratase reactivating factor BED32_08905 b0674a8fc01620c20050baf1dea50d7c 113 SUPERFAMILY SSF52968 2 113 1.16E-35 T 11-10-2018 IPR010254 B12-dependent dehydratases, beta subunit BED32_08905 b0674a8fc01620c20050baf1dea50d7c 113 Gene3D G3DSA:3.40.50.10150 1 113 8.4E-37 T 11-10-2018 IPR010254 B12-dependent dehydratases, beta subunit BED32_20240 29e98e26478033c0b6e9e84108ed5fe0 174 Gene3D G3DSA:3.40.1000.10 37 174 1.4E-8 T 11-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich BED32_20240 29e98e26478033c0b6e9e84108ed5fe0 174 Pfam PF08786 DcrB 41 170 2.8E-28 T 11-10-2018 IPR014894 Protein DcrB BED32_20475 b0dea20d386fc89b6d59872ee595b8f0 358 Hamap MF_02025 ECA polysaccharide chain length modulation protein [wzzE]. 15 355 57.678 T 11-10-2018 IPR032895 ECA polysaccharide chain length modulation protein WzzE GO:0009246|GO:0016021 BED32_20475 b0dea20d386fc89b6d59872ee595b8f0 358 SUPERFAMILY SSF160355 61 326 1.2E-83 T 11-10-2018 BED32_20475 b0dea20d386fc89b6d59872ee595b8f0 358 Pfam PF02706 Chain length determinant protein 22 92 5.5E-14 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 BED32_04210 ed559fd61a3ab238132fb24a9bad606f 634 Pfam PF04632 Fusaric acid resistance protein family 290 523 3.5E-26 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 BED32_02305 17a718660b34f12fb3b266562b37143b 442 Pfam PF07804 HipA-like C-terminal domain 155 406 9.9E-49 T 11-10-2018 IPR012893 HipA-like, C-terminal BED32_02305 17a718660b34f12fb3b266562b37143b 442 Pfam PF13657 HipA N-terminal domain 8 108 8.1E-22 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 BED32_02305 17a718660b34f12fb3b266562b37143b 442 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 8 108 9.3E-29 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 BED32_02820 4fe3525efb4cdaf97d975d5c8ecde48b 370 SUPERFAMILY SSF53383 7 368 9.03E-35 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_02820 4fe3525efb4cdaf97d975d5c8ecde48b 370 TIGRFAM TIGR01437 selA_rel: uncharacterized pyridoxal phosphate-dependent enzyme 4 366 2.3E-178 T 11-10-2018 IPR006337 Pyridoxal phosphate-dependent enzyme, SelA-like KEGG: 00030+4.3.1.29|MetaCyc: PWY-7310 BED32_02820 4fe3525efb4cdaf97d975d5c8ecde48b 370 Pfam PF03841 L-seryl-tRNA selenium transferase 14 270 2.2E-13 T 11-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BED32_02820 4fe3525efb4cdaf97d975d5c8ecde48b 370 Gene3D G3DSA:3.40.640.10 23 277 2.3E-50 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_05700 6a996fc3806c7393d1f3ae97c940002f 316 Gene3D G3DSA:3.20.20.190 12 316 1.1E-42 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_05700 6a996fc3806c7393d1f3ae97c940002f 316 SUPERFAMILY SSF51695 30 311 2.88E-51 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_05700 6a996fc3806c7393d1f3ae97c940002f 316 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 36 306 2.2E-21 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BED32_10365 813bbf76e0ed8c0fd17877c82a82f71a 182 SUPERFAMILY SSF55729 1 151 2.41E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_10365 813bbf76e0ed8c0fd17877c82a82f71a 182 Pfam PF13302 Acetyltransferase (GNAT) domain 8 148 1.1E-29 T 11-10-2018 IPR000182 GNAT domain BED32_10365 813bbf76e0ed8c0fd17877c82a82f71a 182 Gene3D G3DSA:3.40.630.30 1 157 5.7E-41 T 11-10-2018 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 SUPERFAMILY SSF53850 30 256 1.76E-68 T 11-10-2018 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 PIRSF PIRSF004846 2 258 1.0E-76 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 Gene3D G3DSA:3.40.190.10 108 219 8.1E-86 T 11-10-2018 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 35 254 2.1E-79 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 Gene3D G3DSA:3.40.190.10 31 255 8.1E-86 T 11-10-2018 BED32_07945 b20194b58ac2b33b064595dd736e2f5b 258 Pfam PF13531 Bacterial extracellular solute-binding protein 31 255 2.4E-47 T 11-10-2018 BED32_04980 a589ca72213566fd140ba11f16025406 82 SUPERFAMILY SSF54565 1 76 1.83E-28 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04980 a589ca72213566fd140ba11f16025406 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.924 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04980 a589ca72213566fd140ba11f16025406 82 Gene3D G3DSA:3.30.1320.10 1 82 4.4E-30 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04980 a589ca72213566fd140ba11f16025406 82 Pfam PF00886 Ribosomal protein S16 8 68 1.4E-23 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04980 a589ca72213566fd140ba11f16025406 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_04980 a589ca72213566fd140ba11f16025406 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 4.0E-29 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16450 19a184466237ba6ed71acc9c66ff3196 352 TIGRFAM TIGR00802 nico: transition metal uptake transporter, Ni2+-Co2+ transporter (NiCoT) family 52 333 1.5E-126 T 11-10-2018 IPR004688 Transition metal uptake transporter nickel/cobalt GO:0015099|GO:0016021|GO:0035444|GO:0046872 BED32_16450 19a184466237ba6ed71acc9c66ff3196 352 Pfam PF03824 High-affinity nickel-transport protein 48 338 1.9E-91 T 11-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 14 271 8.6E-145 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 SUPERFAMILY SSF53850 33 271 9.37E-83 T 11-10-2018 BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 Pfam PF03180 NLPA lipoprotein 33 271 2.4E-98 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 Gene3D G3DSA:3.40.190.10 34 265 9.4E-101 T 11-10-2018 BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 PIRSF PIRSF002854 1 271 4.2E-105 T 11-10-2018 IPR004872 Lipoprotein NlpA family BED32_16745 25c630642f27c4c90ce3cb51af78c41f 271 Gene3D G3DSA:3.40.190.10 115 221 9.4E-101 T 11-10-2018 BED32_05660 9391b7d23feb1143e2f32560d0ded299 447 Pfam PF11973 NQRA C-terminal domain 262 310 4.2E-20 T 11-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 BED32_05660 9391b7d23feb1143e2f32560d0ded299 447 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 447 1.0E-185 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 BED32_05660 9391b7d23feb1143e2f32560d0ded299 447 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 257 2.0E-118 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 BED32_05660 9391b7d23feb1143e2f32560d0ded299 447 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 447 47.049 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 BED32_10895 dc17efce9231ae652aec3dc496be1d6a 296 SUPERFAMILY SSF54001 159 290 4.9E-40 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_10895 dc17efce9231ae652aec3dc496be1d6a 296 Gene3D G3DSA:3.90.1720.10 84 289 3.9E-42 T 11-10-2018 BED32_10895 dc17efce9231ae652aec3dc496be1d6a 296 Pfam PF00877 NlpC/P60 family 178 288 7.3E-31 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BED32_07020 7e718918301adbbf9ae9bf95b68e411b 162 Pfam PF06530 Phage antitermination protein Q 19 98 1.5E-5 T 11-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 BED32_00470 eacb17b718db780f37f03465fc62d420 361 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 361 98.775 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BED32_00470 eacb17b718db780f37f03465fc62d420 361 SUPERFAMILY SSF52540 1 339 6.6E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00470 eacb17b718db780f37f03465fc62d420 361 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 342 7.1E-39 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal BED32_00470 eacb17b718db780f37f03465fc62d420 361 Gene3D G3DSA:1.20.1050.90 120 297 1.5E-79 T 11-10-2018 BED32_00470 eacb17b718db780f37f03465fc62d420 361 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 1.6E-131 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 BED32_00470 eacb17b718db780f37f03465fc62d420 361 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BED32_00470 eacb17b718db780f37f03465fc62d420 361 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 BED32_00470 eacb17b718db780f37f03465fc62d420 361 Gene3D G3DSA:3.40.50.300 8 331 1.5E-79 T 11-10-2018 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 SUPERFAMILY SSF54995 1 103 1.83E-37 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 Gene3D G3DSA:3.30.70.60 1 92 8.1E-33 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 1.0E-37 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.959 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 Pfam PF01250 Ribosomal protein S6 3 91 9.4E-28 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19150 0a784ffdf5113f66e902cce07d92495a 130 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 11-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 BED32_21300 d82783c7e720025264bf5813c48c3fdf 89 Gene3D G3DSA:1.10.1580.20 1 89 5.1E-46 T 11-10-2018 IPR038134 YihD-like superfamily BED32_21300 d82783c7e720025264bf5813c48c3fdf 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 4.0E-43 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 BED32_21300 d82783c7e720025264bf5813c48c3fdf 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 5.9E-46 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 BED32_03480 7f53c213bf5d5075e1d04ae5aff3cff0 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 3.3E-165 T 11-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain BED32_03480 7f53c213bf5d5075e1d04ae5aff3cff0 386 Gene3D G3DSA:3.30.1490.330 263 343 4.7E-29 T 11-10-2018 BED32_03480 7f53c213bf5d5075e1d04ae5aff3cff0 386 SUPERFAMILY SSF52440 174 279 1.04E-41 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily BED32_03480 7f53c213bf5d5075e1d04ae5aff3cff0 386 SUPERFAMILY SSF56059 1 383 2.47E-93 T 11-10-2018 BED32_04045 69351db5347d998a1348b979fc166cb0 367 Gene3D G3DSA:1.10.10.2140 318 367 1.8E-21 T 11-10-2018 BED32_04045 69351db5347d998a1348b979fc166cb0 367 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 2 367 7.3E-154 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 BED32_04045 69351db5347d998a1348b979fc166cb0 367 PIRSF PIRSF005622 1 367 2.1E-153 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 BED32_04045 69351db5347d998a1348b979fc166cb0 367 Gene3D G3DSA:3.40.50.11750 27 263 1.2E-110 T 11-10-2018 BED32_04045 69351db5347d998a1348b979fc166cb0 367 Gene3D G3DSA:3.40.50.11740 66 304 1.2E-110 T 11-10-2018 BED32_04045 69351db5347d998a1348b979fc166cb0 367 Pfam PF01924 Hydrogenase formation hypA family 18 367 1.5E-149 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 8 136 1.1E-57 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 SUPERFAMILY SSF53098 4 137 1.35E-42 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 SMART SM00732 4 104 3.3E-42 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 Pfam PF03652 Holliday junction resolvase 5 137 4.1E-43 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 4 139 26.109 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 BED32_04370 367753a8016d3b37f2bd815bde9c73ba 140 Gene3D G3DSA:3.30.420.140 2 139 8.3E-47 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 BED32_14965 d94677d438efce23406bc619622cd107 188 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 11 183 1.4E-75 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 BED32_14965 d94677d438efce23406bc619622cd107 188 Gene3D G3DSA:3.40.30.10 26 186 3.8E-45 T 11-10-2018 BED32_14965 d94677d438efce23406bc619622cd107 188 SUPERFAMILY SSF52833 51 184 4.13E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_14965 d94677d438efce23406bc619622cd107 188 Pfam PF08534 Redoxin 47 169 2.7E-23 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BED32_14965 d94677d438efce23406bc619622cd107 188 ProSitePatterns PS00194 Thioredoxin family active site. 77 95 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 Gene3D G3DSA:3.40.190.10 123 214 2.0E-54 T 11-10-2018 BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 4.5E-48 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 SUPERFAMILY SSF53850 3 255 4.07E-54 T 11-10-2018 BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 SMART SM00062 36 256 3.9E-44 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_05190 c2e5268ea8f90bb40f6d278097a6cad3 263 Gene3D G3DSA:3.40.190.10 28 246 2.0E-54 T 11-10-2018 BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 SUPERFAMILY SSF47240 9 323 1.15E-106 T 11-10-2018 IPR009078 Ferritin-like superfamily BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 Gene3D G3DSA:1.10.620.20 5 292 1.8E-115 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 11 323 3.5E-146 T 11-10-2018 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 101 117 - T 11-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 PIRSF PIRSF000355 2 320 2.3E-83 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_16615 bfc2cdb7ad5990de68e93579ec03f2a5 323 Pfam PF00268 Ribonucleotide reductase, small chain 13 283 8.4E-87 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_06975 988774aca83911107e600959338a691f 79 Pfam PF15944 Domain of unknown function (DUF4752) 3 79 1.0E-30 T 11-10-2018 IPR031858 Protein of unknown function DUF4752 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 3.0E-111 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 2.2E-38 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 1.0E-43 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 PIRSF PIRSF000804 1 366 2.1E-115 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Gene3D G3DSA:3.10.150.10 248 366 3.5E-41 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 SUPERFAMILY SSF55979 1 121 2.47E-26 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 SUPERFAMILY SSF55979 245 366 9.42E-37 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 SUPERFAMILY SSF55979 125 244 9.42E-31 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Gene3D G3DSA:3.10.150.10 1 123 2.3E-42 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 SMART SM00480 17 362 5.3E-165 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Gene3D G3DSA:3.10.150.10 124 247 8.4E-40 T 11-10-2018 BED32_00465 03114528ca550b8114ee1ce16e723f64 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 129 243 5.1E-40 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 BED32_16360 0ed4b09ce77321ae8d0b57e1e6f4f1ba 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 7.0E-34 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 BED32_16360 0ed4b09ce77321ae8d0b57e1e6f4f1ba 144 Gene3D G3DSA:3.30.530.20 3 143 2.9E-40 T 11-10-2018 IPR023393 START-like domain superfamily BED32_16360 0ed4b09ce77321ae8d0b57e1e6f4f1ba 144 SUPERFAMILY SSF55961 1 142 4.02E-36 T 11-10-2018 BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 SUPERFAMILY SSF53383 116 234 1.01E-19 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 SUPERFAMILY SSF46785 24 91 5.34E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 SMART SM00345 22 81 7.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 81 1.6E-11 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 Pfam PF00155 Aminotransferase class I and II 173 229 1.3E-4 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 Gene3D G3DSA:1.10.10.10 22 123 4.3E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_09165 ee0d723b13ef3095c037355e67ba123f 325 Gene3D G3DSA:3.40.640.10 124 241 6.2E-23 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Gene3D G3DSA:1.10.287.470 91 158 2.6E-27 T 11-10-2018 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 SUPERFAMILY SSF56954 2 398 1.09E-63 T 11-10-2018 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Gene3D G3DSA:1.20.1600.10 286 403 1.4E-30 T 11-10-2018 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 96 397 6.9E-73 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Pfam PF02321 Outer membrane efflux protein 216 395 1.1E-28 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Gene3D G3DSA:2.20.200.10 212 285 5.0E-25 T 11-10-2018 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Gene3D G3DSA:2.40.50.100 56 90 2.6E-27 T 11-10-2018 BED32_18880 9a13ef5b9e52eb599f1f5bd545be9123 404 Pfam PF13533 Biotin-lipoyl like 59 105 4.3E-10 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_18750 99faeef9d29453a18d3e0820c7942f21 288 Pfam PF06007 Phosphonate metabolism protein PhnJ 7 278 2.7E-144 T 11-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_18750 99faeef9d29453a18d3e0820c7942f21 288 PIRSF PIRSF011468 1 288 1.0E-162 T 11-10-2018 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase GO:0016829|GO:0019700|GO:0051539 KEGG: 00440+4.7.1.1|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Gene3D G3DSA:3.40.1350.30 134 270 6.4E-117 T 11-10-2018 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Gene3D G3DSA:2.40.50.140 1 87 2.1E-31 T 11-10-2018 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 369 399 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 SUPERFAMILY SSF50249 2 66 6.28E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 24 430 2.8E-135 T 11-10-2018 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 SUPERFAMILY SSF53335 75 435 2.76E-81 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 420 430 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 129 435 1.6E-23 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 18 438 62.71 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Gene3D G3DSA:3.40.50.150 88 432 6.4E-117 T 11-10-2018 BED32_17550 2ad9a2e7780c7fab1a2d684d03e2a8aa 443 Pfam PF01938 TRAM domain 12 66 9.0E-12 T 11-10-2018 IPR002792 TRAM domain BED32_15545 adc50e62ddb7a365706d46afc9af0581 140 Pfam PF03960 ArsC family 13 122 9.6E-14 T 11-10-2018 IPR006660 Arsenate reductase-like BED32_15545 adc50e62ddb7a365706d46afc9af0581 140 SUPERFAMILY SSF52833 11 123 8.35E-31 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_15545 adc50e62ddb7a365706d46afc9af0581 140 Gene3D G3DSA:3.40.30.10 10 124 6.2E-40 T 11-10-2018 BED32_15545 adc50e62ddb7a365706d46afc9af0581 140 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 11 123 1.9E-38 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR BED32_05975 b5fe3a3e886d06232f5a5e3df0cbbf7f 165 SUPERFAMILY SSF101307 8 155 1.44E-50 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 BED32_05975 b5fe3a3e886d06232f5a5e3df0cbbf7f 165 PIRSF PIRSF006162 4 162 2.8E-61 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 BED32_05975 b5fe3a3e886d06232f5a5e3df0cbbf7f 165 Pfam PF04608 Phosphatidylglycerophosphatase A 15 154 1.0E-53 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 SUPERFAMILY SSF56935 22 657 5.68E-126 T 11-10-2018 BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 Gene3D G3DSA:2.40.170.20 166 657 1.5E-138 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 Pfam PF00593 TonB dependent receptor 220 655 1.9E-57 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 155 2.1E-28 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 11-10-2018 IPR010916 TonB box, conserved site BED32_14015 b48ecb37286f8d66e1ef1b3a76425499 657 Gene3D G3DSA:2.170.130.10 31 160 1.4E-40 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 SUPERFAMILY SSF52540 263 484 4.04E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 Gene3D G3DSA:3.40.50.300 260 492 2.0E-48 T 11-10-2018 BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 SUPERFAMILY SSF52540 3 228 2.57E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 ProSitePatterns PS00211 ABC transporters family signature. 398 412 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 SMART SM00382 280 474 6.6E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 SMART SM00382 29 217 1.6E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 Pfam PF00005 ABC transporter 272 425 8.4E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 Gene3D G3DSA:3.40.50.300 1 238 6.0E-58 T 11-10-2018 BED32_00760 f6647d0f60f0bd7d3c19c0cce88dab46 496 Pfam PF00005 ABC transporter 20 169 1.6E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 Gene3D G3DSA:3.40.190.10 113 321 6.7E-33 T 11-10-2018 BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 SUPERFAMILY SSF53850 117 550 9.59E-68 T 11-10-2018 BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 SUPERFAMILY SSF46785 4 56 1.96E-5 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 Pfam PF12793 Sugar transport-related sRNA regulator N-term 5 118 3.2E-43 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 Hamap MF_01449 HTH-type transcriptional regulator SgrR [sgrR]. 1 553 67.522 T 11-10-2018 IPR023767 Transcriptional regulator SgrR BED32_18005 77cc5c21c07597dc2475893f8d5279e6 553 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 164 309 7.3E-20 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_01790 70db6258f73be852fdf4292826ec02d9 183 Gene3D G3DSA:3.40.50.360 6 179 2.5E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_01790 70db6258f73be852fdf4292826ec02d9 183 SUPERFAMILY SSF52218 5 176 9.31E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_01790 70db6258f73be852fdf4292826ec02d9 183 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 1 182 50.899 T 11-10-2018 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 BED32_01790 70db6258f73be852fdf4292826ec02d9 183 Pfam PF02525 Flavodoxin-like fold 6 173 3.8E-40 T 11-10-2018 IPR003680 Flavodoxin-like fold BED32_16775 c743e034bddb42f7916a891ec00bb885 182 Gene3D G3DSA:3.10.640.10 1 181 1.9E-76 T 11-10-2018 IPR038590 YaeQ superfamily BED32_16775 c743e034bddb42f7916a891ec00bb885 182 PIRSF PIRSF011484 1 180 1.3E-69 T 11-10-2018 IPR009822 YaeQ BED32_16775 c743e034bddb42f7916a891ec00bb885 182 SMART SM01322 1 176 2.4E-119 T 11-10-2018 IPR009822 YaeQ BED32_16775 c743e034bddb42f7916a891ec00bb885 182 Pfam PF07152 YaeQ protein 1 173 1.6E-75 T 11-10-2018 IPR009822 YaeQ BED32_16775 c743e034bddb42f7916a891ec00bb885 182 SUPERFAMILY SSF52980 2 179 1.47E-71 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 Gene3D G3DSA:3.40.190.10 116 211 3.4E-50 T 11-10-2018 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 38 260 2.0E-22 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 SUPERFAMILY SSF53850 48 320 3.35E-46 T 11-10-2018 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 Gene3D G3DSA:3.40.190.10 40 318 3.4E-50 T 11-10-2018 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 SMART SM00062 38 253 3.1E-21 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_01755 6a28f7f81795567921d869b10165a1bc 342 Gene3D G3DSA:1.10.8.450 247 286 3.4E-50 T 11-10-2018 BED32_01755 6a28f7f81795567921d869b10165a1bc 342 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 39 334 4.2E-137 T 11-10-2018 IPR010068 Taurine ABC transporter, substrate-binding protein TauA GO:0015734|GO:0042597 BED32_08235 fed486454942171780ba6694c2ebd435 727 Hamap MF_02205 ATP-dependent DNA helicase DinG [dinG]. 34 696 34.347 T 11-10-2018 IPR039000 ATP-dependent DNA helicase DinG GO:0004003 BED32_08235 fed486454942171780ba6694c2ebd435 727 Gene3D G3DSA:3.40.50.300 26 289 1.5E-39 T 11-10-2018 BED32_08235 fed486454942171780ba6694c2ebd435 727 SMART SM00491 545 677 7.1E-31 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BED32_08235 fed486454942171780ba6694c2ebd435 727 Pfam PF13307 Helicase C-terminal domain 534 688 1.4E-23 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BED32_08235 fed486454942171780ba6694c2ebd435 727 SUPERFAMILY SSF52540 47 670 5.1E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08235 fed486454942171780ba6694c2ebd435 727 SMART SM00488 18 294 0.0037 T 11-10-2018 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 BED32_08235 fed486454942171780ba6694c2ebd435 727 SMART SM00487 23 307 0.0015 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_08235 fed486454942171780ba6694c2ebd435 727 Gene3D G3DSA:3.40.50.300 505 690 1.0E-19 T 11-10-2018 BED32_08235 fed486454942171780ba6694c2ebd435 727 Pfam PF06733 DEAD_2 197 263 2.0E-7 T 11-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 236 5.9E-122 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 2.7E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 2.7E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 239 162.157 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 SUPERFAMILY SSF46785 12 87 3.7E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 SUPERFAMILY SSF48008 79 230 1.01E-65 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 Pfam PF07840 FadR C-terminal domain 72 234 8.2E-74 T 11-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 SMART SM00345 12 71 1.0E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 Gene3D G3DSA:1.10.10.10 1 79 1.3E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 5.3E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_12315 778b8642142a0b13483c200d7f0d2fe9 239 Gene3D G3DSA:1.20.120.530 80 239 3.2E-44 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_00335 07b31c658924c6b8dad75e677481df03 87 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 16 86 3.0E-26 T 11-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 BED32_00335 07b31c658924c6b8dad75e677481df03 87 Gene3D G3DSA:1.20.58.90 7 86 1.1E-11 T 11-10-2018 BED32_00335 07b31c658924c6b8dad75e677481df03 87 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 15 86 2.6E-31 T 11-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 BED32_00335 07b31c658924c6b8dad75e677481df03 87 SUPERFAMILY SSF140129 12 82 3.92E-22 T 11-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 BED32_08340 f0a227a84a605ff09a855ef214e20e1c 230 SUPERFAMILY SSF53474 7 224 5.7E-30 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_08340 f0a227a84a605ff09a855ef214e20e1c 230 Gene3D G3DSA:3.40.50.1820 2 228 1.6E-40 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_08340 f0a227a84a605ff09a855ef214e20e1c 230 Pfam PF12697 Alpha/beta hydrolase family 7 220 2.7E-17 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_04570 7de803a550dc65565f49af34dcd74ff7 135 Gene3D G3DSA:3.30.160.250 1 86 3.6E-20 T 11-10-2018 BED32_04570 7de803a550dc65565f49af34dcd74ff7 135 Gene3D G3DSA:1.10.1220.10 101 135 9.2E-6 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BED32_04570 7de803a550dc65565f49af34dcd74ff7 135 SUPERFAMILY SSF143100 1 59 3.4E-14 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like BED32_04570 7de803a550dc65565f49af34dcd74ff7 135 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 129 2.4E-29 T 11-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system BED32_11300 850b0e2c13564616015e69d9de16b473 157 SMART SM00871 1 154 4.4E-34 T 11-10-2018 IPR010499 Bacterial transcription activator, effector binding BED32_11300 850b0e2c13564616015e69d9de16b473 157 Hamap MF_01896 DNA gyrase inhibitor [sbmC]. 1 156 38.33 T 11-10-2018 IPR024911 DNA gyrase inhibitor GyrI GO:0008657 BED32_11300 850b0e2c13564616015e69d9de16b473 157 Gene3D G3DSA:3.20.80.10 1 157 9.1E-39 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_11300 850b0e2c13564616015e69d9de16b473 157 SUPERFAMILY SSF55136 1 155 3.14E-36 T 11-10-2018 IPR011256 Regulatory factor, effector binding domain superfamily BED32_11300 850b0e2c13564616015e69d9de16b473 157 Pfam PF06445 GyrI-like small molecule binding domain 1 150 9.4E-28 T 11-10-2018 IPR029442 GyrI-like small molecule binding domain BED32_02360 a7814829d1c06b626ff271ee2726524f 341 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 6.0E-32 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_02360 a7814829d1c06b626ff271ee2726524f 341 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_02360 a7814829d1c06b626ff271ee2726524f 341 Gene3D G3DSA:3.40.190.10 128 223 1.1E-52 T 11-10-2018 BED32_02360 a7814829d1c06b626ff271ee2726524f 341 Gene3D G3DSA:3.40.190.10 26 255 1.1E-52 T 11-10-2018 BED32_02360 a7814829d1c06b626ff271ee2726524f 341 SUPERFAMILY SSF53850 27 257 1.28E-48 T 11-10-2018 BED32_02360 a7814829d1c06b626ff271ee2726524f 341 SMART SM00062 36 265 8.8E-58 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_17285 af016549cbb771c07f296e6bd5058f31 142 TIGRFAM TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family 4 132 3.7E-43 T 11-10-2018 IPR022452 Antitoxin MqsA BED32_17285 af016549cbb771c07f296e6bd5058f31 142 Gene3D G3DSA:1.10.260.40 65 132 1.4E-21 T 11-10-2018 BED32_17285 af016549cbb771c07f296e6bd5058f31 142 SMART SM00530 74 128 6.6E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_17285 af016549cbb771c07f296e6bd5058f31 142 SUPERFAMILY SSF47413 64 121 6.61E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_17285 af016549cbb771c07f296e6bd5058f31 142 Gene3D G3DSA:1.20.58.720 1 64 1.8E-27 T 11-10-2018 BED32_17285 af016549cbb771c07f296e6bd5058f31 142 TIGRFAM TIGR03831 YgiT_finger: YgiT-type zinc finger domain 4 48 1.2E-15 T 11-10-2018 IPR022453 Zinc finger, MqsA-type BED32_17285 af016549cbb771c07f296e6bd5058f31 142 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 2 132 2.5E-60 T 11-10-2018 IPR032758 Antitoxin MqsA/HigA-2 BED32_12700 7a1023389d40932688039cdf7de2380d 305 Gene3D G3DSA:3.40.35.10 141 305 2.0E-62 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_12700 7a1023389d40932688039cdf7de2380d 305 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 99 1.0E-37 T 11-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 BED32_12700 7a1023389d40932688039cdf7de2380d 305 Gene3D G3DSA:3.40.50.510 1 119 1.2E-33 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_12700 7a1023389d40932688039cdf7de2380d 305 SUPERFAMILY SSF53062 1 112 1.05E-29 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_12700 7a1023389d40932688039cdf7de2380d 305 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 146 293 1.6E-57 T 11-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 BED32_12700 7a1023389d40932688039cdf7de2380d 305 Pfam PF03830 PTS system sorbose subfamily IIB component 146 292 3.1E-57 T 11-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 BED32_12700 7a1023389d40932688039cdf7de2380d 305 Pfam PF03610 PTS system fructose IIA component 2 99 5.0E-27 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BED32_12700 7a1023389d40932688039cdf7de2380d 305 SUPERFAMILY SSF52728 144 303 1.31E-56 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 BED32_13130 f0392a1d771641484af13014d4f608b5 477 SUPERFAMILY SSF55604 402 474 2.35E-20 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_13130 f0392a1d771641484af13014d4f608b5 477 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 475 1.5E-228 T 11-10-2018 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0016021|GO:1904659 BED32_13130 f0392a1d771641484af13014d4f608b5 477 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 378 460 3.5E-25 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 BED32_13130 f0392a1d771641484af13014d4f608b5 477 Gene3D G3DSA:3.30.1360.60 397 477 4.5E-31 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_13130 f0392a1d771641484af13014d4f608b5 477 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 414 431 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_13130 f0392a1d771641484af13014d4f608b5 477 Pfam PF00367 phosphotransferase system, EIIB 405 436 5.9E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_13130 f0392a1d771641484af13014d4f608b5 477 TIGRFAM TIGR00852 pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component 52 331 8.1E-88 T 11-10-2018 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component GO:0008982|GO:0009401|GO:0016021 BED32_13130 f0392a1d771641484af13014d4f608b5 477 Pfam PF02378 Phosphotransferase system, EIIC 13 320 1.5E-83 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 Gene3D G3DSA:3.40.50.150 96 343 3.9E-66 T 11-10-2018 BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 Gene3D G3DSA:1.10.10.10 4 94 6.7E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 SUPERFAMILY SSF53335 100 340 6.79E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 PIRSF PIRSF005739 1 343 1.6E-44 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 SUPERFAMILY SSF46785 9 98 8.07E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04160 8d3faa9099d8b688cc69726524f06a66 343 Pfam PF00891 O-methyltransferase 107 322 4.2E-37 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 Pfam PF14503 YhfZ C-terminal domain 76 299 1.0E-82 T 11-10-2018 IPR032791 Uncharacterised protein YhfZ, C-terminal domain BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 Pfam PF14502 Helix-turn-helix domain 25 71 1.7E-22 T 11-10-2018 BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 Gene3D G3DSA:3.40.190.10 91 299 3.1E-68 T 11-10-2018 BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 Gene3D G3DSA:1.10.10.10 19 76 2.0E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 SUPERFAMILY SSF53850 74 299 1.02E-83 T 11-10-2018 BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 SUPERFAMILY SSF46785 18 71 8.65E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_16120 d40c2292e20a623c0ec16d21c10caed9 299 Gene3D G3DSA:3.40.190.10 167 256 3.1E-68 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 Pfam PF00117 Glutamine amidotransferase class-I 6 186 4.8E-44 T 11-10-2018 IPR017926 Glutamine amidotransferase BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.6E-14 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.6E-14 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.6E-14 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 Gene3D G3DSA:3.40.50.880 1 192 4.3E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 2.8E-6 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 2.8E-6 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 104 112 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 4 18 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 79 90 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 52 61 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 166 179 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 PRINTS PR00097 Anthranilate synthase component II signature 124 136 1.2E-36 T 11-10-2018 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 187 1.3E-55 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_11995 7a4066be8aab6e7079e53518d7682a42 196 SUPERFAMILY SSF52317 3 191 8.46E-47 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_02910 65b26e51c57250547c0ae110e53bef17 283 SUPERFAMILY SSF52540 2 151 1.68E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02910 65b26e51c57250547c0ae110e53bef17 283 Pfam PF03668 P-loop ATPase protein family 1 282 2.3E-144 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 BED32_02910 65b26e51c57250547c0ae110e53bef17 283 PIRSF PIRSF005052 1 283 1.0E-113 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 BED32_02910 65b26e51c57250547c0ae110e53bef17 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 281 40.967 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Gene3D G3DSA:2.30.40.20 10 73 7.5E-42 T 11-10-2018 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 350 3.2E-18 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 SUPERFAMILY SSF56672 1 236 3.91E-67 T 11-10-2018 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Pfam PF13438 Domain of unknown function (DUF4113) 370 417 7.7E-18 T 11-10-2018 IPR025188 Domain of unknown function DUF4113 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 SUPERFAMILY SSF100879 248 334 2.88E-6 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Gene3D G3DSA:3.30.70.270 4 154 7.5E-42 T 11-10-2018 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Gene3D G3DSA:3.30.1490.100 245 353 4.2E-7 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Pfam PF11798 IMS family HHH motif 172 199 1.4E-6 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Pfam PF00817 impB/mucB/samB family 5 150 7.8E-34 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 BED32_12905 be9f21a9268fd8c813c20a8f6cdd9cc6 422 Gene3D G3DSA:1.10.150.20 172 228 1.6E-9 T 11-10-2018 BED32_21540 22696e169a5ff584f4c9ba87ed44142a 163 Pfam PF03928 Haem-degrading 31 156 6.5E-26 T 11-10-2018 IPR005624 Haem-degrading BED32_21540 22696e169a5ff584f4c9ba87ed44142a 163 SUPERFAMILY SSF143744 25 158 3.79E-33 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_21540 22696e169a5ff584f4c9ba87ed44142a 163 Gene3D G3DSA:3.30.450.150 31 160 1.8E-36 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_01010 a0e1f4638f10895a28905a64d2f01a92 62 Pfam PF11120 Cellulose biosynthesis protein BcsF 1 59 3.4E-31 T 11-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT BED32_01010 a0e1f4638f10895a28905a64d2f01a92 62 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 1 62 3.3E-19 T 11-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT BED32_01010 a0e1f4638f10895a28905a64d2f01a92 62 ProDom PD053231 YHJT MEMBRANE INNER BCSF 1 62 1.0E-7 T 11-10-2018 IPR019995 Cellulose biosynthesis, BcsF/YhjT BED32_21175 95887177c283af69ca7efab5965e76e3 91 Pfam PF01192 RNA polymerase Rpb6 10 60 8.2E-17 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BED32_21175 95887177c283af69ca7efab5965e76e3 91 Gene3D G3DSA:3.90.940.10 1 91 1.3E-30 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BED32_21175 95887177c283af69ca7efab5965e76e3 91 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.1E-28 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_21175 95887177c283af69ca7efab5965e76e3 91 SMART SM01409 8 61 1.0E-16 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BED32_21175 95887177c283af69ca7efab5965e76e3 91 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.134 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 BED32_21175 95887177c283af69ca7efab5965e76e3 91 SUPERFAMILY SSF63562 1 79 2.44E-25 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 BED32_21825 ede3c0f173d28fe2dde7bf4d7c32c06d 289 Pfam PF13614 AAA domain 35 201 4.9E-18 T 11-10-2018 IPR025669 AAA domain BED32_21825 ede3c0f173d28fe2dde7bf4d7c32c06d 289 SUPERFAMILY SSF52540 37 283 6.45E-31 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21825 ede3c0f173d28fe2dde7bf4d7c32c06d 289 Gene3D G3DSA:3.40.50.300 3 287 2.0E-40 T 11-10-2018 BED32_11950 7639eda8967ef7c8be7b12a094e76702 83 Gene3D G3DSA:1.10.1900.30 9 77 1.2E-37 T 11-10-2018 IPR038191 YciN superfamily BED32_11950 7639eda8967ef7c8be7b12a094e76702 83 Pfam PF10692 Protein of unknown function (DUF2498) 5 81 3.5E-43 T 11-10-2018 IPR019633 Protein of unknown function DUF2498 BED32_03290 c0ac9a5612fb1828b51739477233e9ea 424 Gene3D G3DSA:2.40.128.130 85 424 3.5E-74 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_03290 c0ac9a5612fb1828b51739477233e9ea 424 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 57 424 6.8E-58 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_03290 c0ac9a5612fb1828b51739477233e9ea 424 Pfam PF03797 Autotransporter beta-domain 130 401 8.0E-34 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_03290 c0ac9a5612fb1828b51739477233e9ea 424 SUPERFAMILY SSF103515 96 424 1.24E-36 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_03290 c0ac9a5612fb1828b51739477233e9ea 424 SMART SM00869 127 413 2.0E-29 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 48.219 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 3.0E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 3.0E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 3.0E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 3.0E-34 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 Pfam PF01018 GTP1/OBG 4 156 2.0E-58 T 11-10-2018 IPR006169 GTP1/OBG domain BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 Pfam PF01926 50S ribosome-binding GTPase 161 284 6.2E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 Gene3D G3DSA:3.40.50.300 159 339 2.2E-52 T 11-10-2018 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 Gene3D G3DSA:2.70.210.12 1 158 1.0E-62 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 SUPERFAMILY SSF52540 151 338 1.33E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 PIRSF PIRSF002401 1 378 1.6E-140 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 1.8E-146 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 BED32_19000 223ba7b7b3b87e9e63439cdf175b3a51 390 SUPERFAMILY SSF82051 2 157 3.79E-57 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily BED32_07325 cad0623a94891a2a12c24c64dd778287 491 SUPERFAMILY SSF143968 316 483 1.44E-26 T 11-10-2018 BED32_07325 cad0623a94891a2a12c24c64dd778287 491 Hamap MF_01983 UbiD-like decarboxylase. 2 489 38.906 T 11-10-2018 IPR032903 UbiD-like decarboxylase/ferulic acid decarboxylase 1 BED32_07325 cad0623a94891a2a12c24c64dd778287 491 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 12 422 1.7E-92 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BED32_07325 cad0623a94891a2a12c24c64dd778287 491 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 7 455 2.1E-75 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 BED32_07325 cad0623a94891a2a12c24c64dd778287 491 Gene3D G3DSA:3.40.1670.10 330 457 2.8E-34 T 11-10-2018 BED32_07325 cad0623a94891a2a12c24c64dd778287 491 SUPERFAMILY SSF50475 4 314 7.85E-75 T 11-10-2018 BED32_15785 7313487fb055c5450ed011b76033bc76 467 ProSitePatterns PS01276 Peptidase family U32 signature. 175 193 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BED32_15785 7313487fb055c5450ed011b76033bc76 467 Pfam PF16325 Peptidase family U32 C-terminal domain 372 453 4.1E-21 T 11-10-2018 IPR032525 Peptidase family U32, C-terminal BED32_15785 7313487fb055c5450ed011b76033bc76 467 Gene3D G3DSA:2.40.30.10 368 454 3.3E-10 T 11-10-2018 BED32_15785 7313487fb055c5450ed011b76033bc76 467 Pfam PF01136 Peptidase family U32 89 356 2.7E-96 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 Pfam PF03466 LysR substrate binding domain 114 280 6.8E-18 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 SUPERFAMILY SSF46785 8 91 2.07E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 Gene3D G3DSA:1.10.10.10 6 94 6.7E-19 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 5.0E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 SUPERFAMILY SSF53850 93 288 5.74E-22 T 11-10-2018 BED32_03185 07836ff7ac4e216f52e885bd86e63f0d 298 Gene3D G3DSA:3.40.190.290 114 288 1.0E-12 T 11-10-2018 BED32_10765 f2ef4b6d860e3bf7480a64ff41896298 59 Pfam PF10636 Hemin uptake protein hemP 23 59 2.6E-17 T 11-10-2018 IPR019600 Hemin uptake protein HemP BED32_10765 f2ef4b6d860e3bf7480a64ff41896298 59 Gene3D G3DSA:2.10.70.10 18 59 4.7E-21 T 11-10-2018 BED32_08600 f9430d9daa43a8347d1d7c24e645f4c3 193 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 35.024 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 BED32_08600 f9430d9daa43a8347d1d7c24e645f4c3 193 Gene3D G3DSA:2.70.40.10 1 162 3.9E-52 T 11-10-2018 IPR036157 dUTPase-like superfamily BED32_08600 f9430d9daa43a8347d1d7c24e645f4c3 193 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 1.9E-70 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 BED32_08600 f9430d9daa43a8347d1d7c24e645f4c3 193 SUPERFAMILY SSF51283 1 193 1.31E-61 T 11-10-2018 IPR036157 dUTPase-like superfamily BED32_08600 f9430d9daa43a8347d1d7c24e645f4c3 193 Pfam PF00692 dUTPase 79 185 1.5E-10 T 11-10-2018 IPR029054 dUTPase-like BED32_16530 96fcc371f5928d84a21280d4e0c4e639 145 Pfam PF00581 Rhodanese-like domain 36 122 2.7E-9 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_16530 96fcc371f5928d84a21280d4e0c4e639 145 SMART SM00450 30 127 3.6E-8 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_16530 96fcc371f5928d84a21280d4e0c4e639 145 Gene3D G3DSA:3.40.250.10 11 129 2.3E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_16530 96fcc371f5928d84a21280d4e0c4e639 145 SUPERFAMILY SSF52821 24 131 3.67E-23 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_16530 96fcc371f5928d84a21280d4e0c4e639 145 ProSitePatterns PS00380 Rhodanese signature 1. 55 66 - T 11-10-2018 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927|Reactome: R-HSA-1614558 BED32_04760 76c6e98ff6506e7a6a2ef599b7e2b9de 387 SUPERFAMILY SSF53383 36 379 3.34E-59 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_04760 76c6e98ff6506e7a6a2ef599b7e2b9de 387 Pfam PF00155 Aminotransferase class I and II 47 373 6.6E-39 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_04760 76c6e98ff6506e7a6a2ef599b7e2b9de 387 Gene3D G3DSA:3.40.640.10 59 288 9.5E-105 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_04760 76c6e98ff6506e7a6a2ef599b7e2b9de 387 Gene3D G3DSA:3.90.1150.10 40 370 9.5E-105 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 1 375 81.654 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 2 374 3.2E-215 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 Gene3D G3DSA:3.40.50.150 14 368 1.3E-75 T 11-10-2018 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 307 338 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 Gene3D G3DSA:3.40.1350.30 56 211 1.3E-75 T 11-10-2018 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 21 374 4.6E-20 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 3 367 8.9E-58 T 11-10-2018 BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 357 367 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site BED32_13885 aed6fbf257a314a90746af4ad04392b8 375 SUPERFAMILY SSF53335 4 374 2.18E-56 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_08475 5fc4810eb29f76f8c5c7bd4899a5659e 133 Pfam PF07450 Formate hydrogenlyase maturation protein HycH 3 131 1.6E-56 T 11-10-2018 IPR010005 Formate hydrogenlyase maturation HycH BED32_08475 5fc4810eb29f76f8c5c7bd4899a5659e 133 ProDom PD021295 MATURATION HYDROGENLYASE FORMATE HYCH LYASE HYCE PROCESSING OXIDOREDUCTASE J COMPONENT 3 131 3.0E-38 T 11-10-2018 IPR010005 Formate hydrogenlyase maturation HycH BED32_16740 149341c122956ed9072e44ad7c6bd33e 217 Gene3D G3DSA:1.10.3720.10 1 217 6.0E-61 T 11-10-2018 IPR035906 MetI-like superfamily BED32_16740 149341c122956ed9072e44ad7c6bd33e 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 214 2.1E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_16740 149341c122956ed9072e44ad7c6bd33e 217 SUPERFAMILY SSF161098 10 201 9.29E-48 T 11-10-2018 IPR035906 MetI-like superfamily BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 SUPERFAMILY SSF46785 4 85 1.38E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.3E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 Gene3D G3DSA:1.10.10.10 5 92 9.2E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 Gene3D G3DSA:3.40.190.10 94 293 1.6E-54 T 11-10-2018 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 SUPERFAMILY SSF53850 92 294 5.61E-42 T 11-10-2018 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 Pfam PF03466 LysR substrate binding domain 90 294 1.5E-39 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 Gene3D G3DSA:3.40.190.10 166 269 1.6E-54 T 11-10-2018 BED32_03165 17510be9dc09ba2f6f8e6aafadc16414 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.7E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 Pfam PF01245 Ribosomal protein L19 3 113 1.3E-49 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 3.1E-52 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 PIRSF PIRSF002191 1 118 7.0E-50 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 SUPERFAMILY SSF50104 2 116 1.4E-47 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.023 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_04995 6c5ea3f8324fe4de6951058ab83f3e3c 118 Gene3D G3DSA:2.30.30.790 2 118 2.3E-16 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_03665 240cbba9b83070c02bda19403dfe1ecb 221 SUPERFAMILY SSF51197 18 214 4.67E-57 T 11-10-2018 BED32_03665 240cbba9b83070c02bda19403dfe1ecb 221 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 25 213 4.9E-50 T 11-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like BED32_03665 240cbba9b83070c02bda19403dfe1ecb 221 Gene3D G3DSA:2.60.120.590 15 219 9.5E-55 T 11-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily BED32_15620 23b29570b7729fdf779add0eb006f1b1 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 5 150 18.841 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BED32_15620 23b29570b7729fdf779add0eb006f1b1 150 Pfam PF04284 Protein of unknown function (DUF441) 9 147 5.8E-47 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BED32_15620 23b29570b7729fdf779add0eb006f1b1 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 5 132 1.0E-34 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame BED32_18500 3cbaea7f797a512abe15ababcda0e12c 401 Gene3D G3DSA:3.40.50.2000 190 380 6.8E-22 T 11-10-2018 BED32_18500 3cbaea7f797a512abe15ababcda0e12c 401 Gene3D G3DSA:3.40.50.2000 70 385 6.8E-22 T 11-10-2018 BED32_18500 3cbaea7f797a512abe15ababcda0e12c 401 Pfam PF00534 Glycosyl transferases group 1 213 360 2.9E-12 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_18500 3cbaea7f797a512abe15ababcda0e12c 401 SUPERFAMILY SSF53756 67 385 1.53E-28 T 11-10-2018 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 SUPERFAMILY SSF46894 130 229 3.4E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 Gene3D G3DSA:1.10.10.10 133 232 1.5E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 1.4E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 SMART SM00862 151 228 2.1E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 Pfam PF00072 Response regulator receiver domain 5 114 2.7E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 Gene3D G3DSA:3.40.50.2300 1 132 1.2E-31 T 11-10-2018 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 SMART SM00448 3 114 3.0E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_17435 7dbf25c514f56ef6450c26f81d4366a9 232 SUPERFAMILY SSF52172 2 130 2.85E-36 T 11-10-2018 IPR011006 CheY-like superfamily BED32_19075 6fb426acec0abfef298d037b991707cf 1294 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 958 1294 4.3E-65 T 11-10-2018 IPR007452 Translocation and assembly module TamB BED32_09835 9c451665424207de8610b4446eca90f9 284 Gene3D G3DSA:3.20.20.70 1 284 8.3E-99 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_09835 9c451665424207de8610b4446eca90f9 284 Pfam PF00793 DAHP synthetase I family 10 275 5.2E-68 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_09835 9c451665424207de8610b4446eca90f9 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.209 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_09835 9c451665424207de8610b4446eca90f9 284 SUPERFAMILY SSF51569 3 278 1.74E-103 T 11-10-2018 BED32_09835 9c451665424207de8610b4446eca90f9 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 2.7E-119 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_08360 2cc6fa6839384b213ee7ffba8ee3ec5c 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_08360 2cc6fa6839384b213ee7ffba8ee3ec5c 339 Pfam PF01548 Transposase 6 146 6.3E-14 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_03545 6a9a7f54d51f31c47320d6c2e177760a 243 SMART SM00563 67 182 1.7E-39 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_03545 6a9a7f54d51f31c47320d6c2e177760a 243 SUPERFAMILY SSF69593 2 238 8.89E-63 T 11-10-2018 BED32_03545 6a9a7f54d51f31c47320d6c2e177760a 243 Pfam PF01553 Acyltransferase 64 180 5.1E-32 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 BED32_03545 6a9a7f54d51f31c47320d6c2e177760a 243 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 3.0E-47 T 11-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF00990 Diguanylate cyclase, GGDEF domain 688 844 1.7E-40 T 11-10-2018 IPR000160 GGDEF domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00086 377 419 4.6E-8 T 11-10-2018 IPR001610 PAC motif BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00086 504 546 0.0029 T 11-10-2018 IPR001610 PAC motif BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00086 635 677 0.16 T 11-10-2018 IPR001610 PAC motif BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 685 848 5.0E-39 T 11-10-2018 IPR000160 GGDEF domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00052 861 1106 4.4E-9 T 11-10-2018 IPR001633 EAL domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:3.30.450.20 548 674 1.2E-20 T 11-10-2018 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SUPERFAMILY SSF55785 297 416 1.08E-22 T 11-10-2018 IPR035965 PAS domain superfamily BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 301 423 5.7E-28 T 11-10-2018 IPR000014 PAS domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 555 681 2.9E-11 T 11-10-2018 IPR000014 PAS domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00267 677 849 9.6E-56 T 11-10-2018 IPR000160 GGDEF domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:2.10.70.100 500 547 1.1E-9 T 11-10-2018 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:3.30.450.20 295 416 2.6E-21 T 11-10-2018 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:3.30.70.270 677 852 1.1E-52 T 11-10-2018 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:3.30.450.20 429 498 5.2E-13 T 11-10-2018 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF00563 EAL domain 869 1100 2.6E-27 T 11-10-2018 IPR001633 EAL domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF08448 PAS fold 564 678 3.7E-8 T 11-10-2018 IPR013656 PAS fold-4 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SUPERFAMILY SSF141868 868 1108 8.63E-26 T 11-10-2018 IPR035919 EAL domain superfamily BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SUPERFAMILY SSF55785 440 547 2.74E-17 T 11-10-2018 IPR035965 PAS domain superfamily BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF05231 MASE1 22 280 8.9E-19 T 11-10-2018 IPR007895 MASE1 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF08447 PAS fold 328 411 1.6E-11 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Pfam PF08447 PAS fold 454 539 7.5E-16 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SUPERFAMILY SSF55073 693 851 8.63E-45 T 11-10-2018 IPR029787 Nucleotide cyclase BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SUPERFAMILY SSF55785 542 672 3.22E-17 T 11-10-2018 IPR035965 PAS domain superfamily BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 Gene3D G3DSA:3.20.20.450 861 1109 5.6E-32 T 11-10-2018 IPR035919 EAL domain superfamily BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00091 431 498 0.058 T 11-10-2018 IPR000014 PAS domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00091 304 370 4.7E-10 T 11-10-2018 IPR000014 PAS domain BED32_15740 5a844a15b108e5ec40529a1c6612f85b 1116 SMART SM00091 558 627 2.0E-5 T 11-10-2018 IPR000014 PAS domain BED32_07900 1d4b5ae716417e1c6d1046de8c8b01e5 111 Pfam PF07769 psiF repeat 76 108 2.7E-19 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat BED32_07900 1d4b5ae716417e1c6d1046de8c8b01e5 111 Pfam PF07769 psiF repeat 33 65 1.6E-16 T 11-10-2018 IPR011690 Phosphate-starvation-induced PsiF repeat BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 6.8E-65 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 Pfam PF01327 Polypeptide deformylase 4 152 2.0E-49 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 Gene3D G3DSA:3.90.45.10 2 169 5.9E-67 T 11-10-2018 IPR036821 Peptide deformylase superfamily BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 SUPERFAMILY SSF56420 3 165 7.2E-62 T 11-10-2018 IPR036821 Peptide deformylase superfamily BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 PRINTS PR01576 Peptide deformylase signature 120 149 3.6E-38 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 PRINTS PR01576 Peptide deformylase signature 101 119 3.6E-38 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 PRINTS PR01576 Peptide deformylase signature 89 100 3.6E-38 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 PRINTS PR01576 Peptide deformylase signature 33 62 3.6E-38 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 PIRSF PIRSF004749 1 169 1.1E-54 T 11-10-2018 IPR023635 Peptide deformylase BED32_02050 f8200ae5128c1fbb86acebebf62dc974 170 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.257 T 11-10-2018 IPR023635 Peptide deformylase BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 PIRSF PIRSF016184 1 260 2.6E-52 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 235 7.9E-30 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 Gene3D G3DSA:3.10.310.10 120 248 7.2E-87 T 11-10-2018 BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 SUPERFAMILY SSF54506 1 259 1.41E-69 T 11-10-2018 BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 Gene3D G3DSA:3.10.310.10 5 252 7.2E-87 T 11-10-2018 BED32_01750 bfaa5bd504dd705e0c5fece145c3d927 260 Pfam PF02567 Phenazine biosynthesis-like protein 8 240 5.9E-48 T 11-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 BED32_11155 bb2b021276ca4c8b31c77d8a66ae2fb6 284 SMART SM00148 11 155 6.3E-9 T 11-10-2018 IPR000909 Phosphatidylinositol-specific phospholipase C, X domain BED32_11155 bb2b021276ca4c8b31c77d8a66ae2fb6 284 SUPERFAMILY SSF51695 1 283 6.8E-52 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_11155 bb2b021276ca4c8b31c77d8a66ae2fb6 284 Gene3D G3DSA:3.20.20.190 1 284 2.2E-73 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_11155 bb2b021276ca4c8b31c77d8a66ae2fb6 284 Pfam PF00388 Phosphatidylinositol-specific phospholipase C, X domain 20 155 3.8E-10 T 11-10-2018 IPR000909 Phosphatidylinositol-specific phospholipase C, X domain BED32_02895 622cf914b13e78c09118e6b25822c615 154 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 103 149 6.9E-20 T 11-10-2018 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal BED32_02895 622cf914b13e78c09118e6b25822c615 154 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 151 3.4E-65 T 11-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 BED32_02895 622cf914b13e78c09118e6b25822c615 154 Gene3D G3DSA:3.30.70.140 1 100 7.6E-37 T 11-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily BED32_02895 622cf914b13e78c09118e6b25822c615 154 SUPERFAMILY SSF54893 1 100 4.58E-35 T 11-10-2018 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily BED32_02895 622cf914b13e78c09118e6b25822c615 154 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 1.0E-45 T 11-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal BED32_02895 622cf914b13e78c09118e6b25822c615 154 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 2.5E-29 T 11-10-2018 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal BED32_02895 622cf914b13e78c09118e6b25822c615 154 Gene3D G3DSA:2.30.30.20 101 153 1.4E-25 T 11-10-2018 BED32_02895 622cf914b13e78c09118e6b25822c615 154 SUPERFAMILY SSF57825 101 151 4.71E-16 T 11-10-2018 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily BED32_02895 622cf914b13e78c09118e6b25822c615 154 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 32.92 T 11-10-2018 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 BED32_10970 0a206ebca85c9ea69a0a07c8831e68cd 370 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 367 40.715 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BED32_10970 0a206ebca85c9ea69a0a07c8831e68cd 370 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 366 1.1E-160 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 BED32_10970 0a206ebca85c9ea69a0a07c8831e68cd 370 Gene3D G3DSA:3.30.420.40 11 362 1.3E-129 T 11-10-2018 BED32_10970 0a206ebca85c9ea69a0a07c8831e68cd 370 Gene3D G3DSA:3.30.420.40 145 327 1.3E-129 T 11-10-2018 BED32_10970 0a206ebca85c9ea69a0a07c8831e68cd 370 SUPERFAMILY SSF53067 6 341 3.63E-26 T 11-10-2018 BED32_10205 143e66e008bdaaa8229dbd1392423732 252 SMART SM00382 29 199 1.0E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_10205 143e66e008bdaaa8229dbd1392423732 252 Pfam PF00005 ABC transporter 20 149 1.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_10205 143e66e008bdaaa8229dbd1392423732 252 Gene3D G3DSA:3.40.50.300 1 241 6.5E-60 T 11-10-2018 BED32_10205 143e66e008bdaaa8229dbd1392423732 252 SUPERFAMILY SSF52540 3 224 1.31E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Gene3D G3DSA:4.10.520.10 1 98 7.5E-38 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 31.046 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SUPERFAMILY SSF47729 3 92 2.21E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 9.9E-31 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.1E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.1E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.1E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 97 1.4E-53 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 BED32_10670 d0a1162ac8bd49845a74ad5bc8fc2a32 98 SMART SM00411 3 92 2.2E-42 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 SMART SM00244 18 176 2.8E-59 T 11-10-2018 IPR001107 Band 7 domain BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 ProSitePatterns PS01270 Band 7 protein family signature. 132 160 - T 11-10-2018 IPR018080 Band 7/stomatin-like, conserved site BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 SUPERFAMILY SSF117892 49 183 6.93E-41 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 Gene3D G3DSA:3.30.479.30 46 178 2.8E-42 T 11-10-2018 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 Pfam PF01145 SPFH domain / Band 7 family 22 200 8.0E-31 T 11-10-2018 IPR001107 Band 7 domain BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 PRINTS PR00721 Stomatin signature 128 151 2.0E-27 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 PRINTS PR00721 Stomatin signature 171 192 2.0E-27 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 PRINTS PR00721 Stomatin signature 108 125 2.0E-27 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 PRINTS PR00721 Stomatin signature 152 170 2.0E-27 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_06415 c98976f306395d5a16acfc0d39b5c01f 304 PRINTS PR00721 Stomatin signature 73 94 2.0E-27 T 11-10-2018 IPR001972 Stomatin family GO:0016020 BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 ProSitePatterns PS00894 DeoR-type HTH domain signature. 8 42 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 Pfam PF08220 DeoR-like helix-turn-helix domain 8 57 1.6E-10 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 SMART SM01134 75 236 3.2E-56 T 11-10-2018 BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 Pfam PF00455 DeoR C terminal sensor domain 77 234 1.4E-44 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 SMART SM00420 8 57 2.3E-8 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_13950 d7b2796c3b8ab273a52a9c4cee194e9d 254 SUPERFAMILY SSF100950 76 238 6.28E-24 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 155 28.574 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 4 157 2.8E-73 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Gene3D G3DSA:1.10.287.180 2 77 4.8E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Hamap MF_00930 Transcription elongation factor GreB [greB]. 2 157 53.146 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 PIRSF PIRSF006092 1 158 2.1E-61 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 SUPERFAMILY SSF46557 4 79 2.49E-26 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 5.5E-24 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Gene3D G3DSA:3.10.50.30 79 158 1.1E-32 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 SUPERFAMILY SSF54534 81 156 3.01E-24 T 11-10-2018 BED32_01545 b64fa0d822f0fb4732ae888fe495bbfc 165 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 1.8E-27 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 Gene3D G3DSA:3.40.190.10 114 207 9.3E-85 T 11-10-2018 BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 SMART SM00062 28 248 2.8E-85 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 SUPERFAMILY SSF53850 1 248 4.35E-74 T 11-10-2018 BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 51 64 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 29 248 1.6E-71 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 Gene3D G3DSA:3.40.190.10 32 246 9.3E-85 T 11-10-2018 BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 3 247 8.3E-89 T 11-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 BED32_13880 fcd55f06b0a858feb98ad8ce0593e482 249 SMART SM00079 28 249 0.0013 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BED32_20020 2b172c9cf7d917da8f7429d572d06f2d 543 Pfam PF03109 ABC1 family 113 231 6.6E-34 T 11-10-2018 IPR004147 UbiB domain BED32_20020 2b172c9cf7d917da8f7429d572d06f2d 543 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.447 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 BED32_20020 2b172c9cf7d917da8f7429d572d06f2d 543 SUPERFAMILY SSF56112 94 435 8.72E-46 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_20020 2b172c9cf7d917da8f7429d572d06f2d 543 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 444 5.7E-178 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 BED32_07495 5c90851f551c8420945064bd767dc95b 351 Pfam PF02562 PhoH-like protein 118 321 4.5E-94 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 BED32_07495 5c90851f551c8420945064bd767dc95b 351 SUPERFAMILY SSF52540 117 298 2.77E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07495 5c90851f551c8420945064bd767dc95b 351 Gene3D G3DSA:3.40.50.300 115 321 5.4E-74 T 11-10-2018 BED32_12475 316b047a6587aa8da03dd319f2a09fe2 335 Pfam PF04960 Glutaminase 42 326 8.5E-96 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_12475 316b047a6587aa8da03dd319f2a09fe2 335 Gene3D G3DSA:3.40.710.10 21 328 1.2E-102 T 11-10-2018 BED32_12475 316b047a6587aa8da03dd319f2a09fe2 335 Hamap MF_00313 Glutaminase [glsA]. 24 326 40.74 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_12475 316b047a6587aa8da03dd319f2a09fe2 335 SUPERFAMILY SSF56601 25 326 1.19E-100 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_12475 316b047a6587aa8da03dd319f2a09fe2 335 TIGRFAM TIGR03814 Gln_ase: glutaminase A 27 326 5.4E-101 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 SMART SM00382 358 544 6.2E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 Gene3D G3DSA:1.20.1560.10 1 315 4.4E-73 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 Gene3D G3DSA:3.40.50.300 329 572 2.1E-91 T 11-10-2018 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 SUPERFAMILY SSF52540 322 569 2.77E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 ProSitePatterns PS00211 ABC transporters family signature. 470 484 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 Pfam PF00664 ABC transporter transmembrane region 20 287 1.8E-49 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 Pfam PF00005 ABC transporter 351 498 1.1E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_12820 bc52ac9b7b75ac1af358423b3b2977bf 572 SUPERFAMILY SSF90123 3 321 5.23E-73 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_16670 cafe18d48ea40b86635e08afa803a9df 253 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 40 244 3.6E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BED32_16670 cafe18d48ea40b86635e08afa803a9df 253 Gene3D G3DSA:3.60.10.10 35 253 4.5E-19 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BED32_16670 cafe18d48ea40b86635e08afa803a9df 253 SUPERFAMILY SSF56219 36 251 2.36E-25 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BED32_14705 4da272dd482be2e921e8908ad34d4b43 302 Pfam PF08338 Domain of unknown function (DUF1731) 250 295 4.5E-19 T 11-10-2018 IPR013549 Domain of unknown function DUF1731 BED32_14705 4da272dd482be2e921e8908ad34d4b43 302 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 214 9.8E-18 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_14705 4da272dd482be2e921e8908ad34d4b43 302 Gene3D G3DSA:3.40.50.720 2 301 5.4E-76 T 11-10-2018 BED32_14705 4da272dd482be2e921e8908ad34d4b43 302 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 293 1.4E-111 T 11-10-2018 IPR010099 Epimerase family protein SDR39U1 BED32_14705 4da272dd482be2e921e8908ad34d4b43 302 SUPERFAMILY SSF51735 1 297 5.75E-43 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20550 efd59f5402c59352d4901791afc50097 367 Gene3D G3DSA:1.10.3290.10 48 280 1.1E-33 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_20550 efd59f5402c59352d4901791afc50097 367 Pfam PF13784 Fic/DOC family N-terminal 27 107 1.6E-21 T 11-10-2018 IPR025758 Fic/DOC N-terminal BED32_20550 efd59f5402c59352d4901791afc50097 367 Pfam PF02661 Fic/DOC family 136 212 3.5E-15 T 11-10-2018 IPR003812 Fido domain BED32_20550 efd59f5402c59352d4901791afc50097 367 SUPERFAMILY SSF140931 93 280 7.98E-31 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_20550 efd59f5402c59352d4901791afc50097 367 PIRSF PIRSF038925 1 359 1.0E-110 T 11-10-2018 IPR026287 Adenosine monophosphate-protein transferase BED32_03220 a8d1b6601e371553782f07182a866be1 112 Pfam PF13721 SecD export protein N-terminal TM region 3 89 1.0E-17 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain BED32_03220 a8d1b6601e371553782f07182a866be1 112 Gene3D G3DSA:3.30.70.260 16 96 2.4E-33 T 11-10-2018 BED32_03220 a8d1b6601e371553782f07182a866be1 112 Hamap MF_00904 Modulator protein MzrA [mzrA]. 1 102 24.608 T 11-10-2018 IPR026574 Modulator protein MzrA BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 SUPERFAMILY SSF103661 466 498 3.66E-11 T 11-10-2018 IPR036292 Proline/betaine transporter ProP, C-terminal BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 433 8.3E-142 T 11-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 Pfam PF08946 Osmosensory transporter coiled coil 455 500 7.9E-21 T 11-10-2018 IPR015041 Osmosensory transporter coiled coil BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 Pfam PF00083 Sugar (and other) transporter 29 449 2.7E-64 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 SUPERFAMILY SSF103473 25 445 2.09E-70 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BED32_04100 e2e27d13c53eb257abbe4d5c3ce1ca8e 500 Gene3D G3DSA:1.20.1250.20 25 461 4.2E-72 T 11-10-2018 BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 115 18.956 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 115 2.4E-34 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 11-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 114 2.8E-27 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 Gene3D G3DSA:3.30.2320.80 1 115 3.7E-24 T 11-10-2018 BED32_08525 f9ebe9595258d3cfd57c4204cb925de2 115 PIRSF PIRSF004761 1 115 4.1E-31 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 BED32_05745 a52336b5471f86a64a6707bacbf53422 415 Gene3D G3DSA:3.40.50.1820 16 414 1.2E-106 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_05745 a52336b5471f86a64a6707bacbf53422 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 1 414 5.5E-216 T 11-10-2018 IPR010520 UPF0255 family BED32_05745 a52336b5471f86a64a6707bacbf53422 415 SUPERFAMILY SSF53474 46 411 9.36E-53 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_05745 a52336b5471f86a64a6707bacbf53422 415 Hamap MF_01063 Esterase FrsA [frsA]. 1 415 60.824 T 11-10-2018 IPR010520 UPF0255 family BED32_02345 1322038dd8182a14751c902c59e33f9f 253 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_02345 1322038dd8182a14751c902c59e33f9f 253 SUPERFAMILY SSF52540 13 247 9.78E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02345 1322038dd8182a14751c902c59e33f9f 253 Pfam PF00005 ABC transporter 29 177 7.6E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02345 1322038dd8182a14751c902c59e33f9f 253 SMART SM00382 38 225 3.3E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_02345 1322038dd8182a14751c902c59e33f9f 253 Gene3D G3DSA:3.40.50.300 11 253 1.6E-79 T 11-10-2018 BED32_02345 1322038dd8182a14751c902c59e33f9f 253 PIRSF PIRSF039085 10 253 2.2E-108 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 545 5.3E-216 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Gene3D G3DSA:3.40.50.1220 186 343 1.2E-119 T 11-10-2018 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 374 522 1.8E-48 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 164 1.4E-57 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Gene3D G3DSA:3.40.50.970 344 522 1.2E-119 T 11-10-2018 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 SUPERFAMILY SSF52518 357 545 7.68E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 186 321 7.0E-42 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 Gene3D G3DSA:3.40.50.970 1 172 2.9E-69 T 11-10-2018 BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 SUPERFAMILY SSF52467 184 342 9.65E-58 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily BED32_00790 f4ba561c60782054e9e84b6bb0ff5421 548 SUPERFAMILY SSF52518 1 176 6.39E-64 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 SMART SM00116 78 127 3.9 T 11-10-2018 IPR000644 CBS domain BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 SMART SM00116 141 189 3.7 T 11-10-2018 IPR000644 CBS domain BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 Pfam PF00571 CBS domain 69 123 5.3E-8 T 11-10-2018 IPR000644 CBS domain BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 Pfam PF00571 CBS domain 143 189 9.6E-5 T 11-10-2018 IPR000644 CBS domain BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 Gene3D G3DSA:3.10.580.10 51 197 4.0E-56 T 11-10-2018 BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 SUPERFAMILY SSF54631 66 202 3.16E-32 T 11-10-2018 BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 Pfam PF03471 Transporter associated domain 206 281 3.2E-22 T 11-10-2018 IPR005170 Transporter-associated domain BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 SUPERFAMILY SSF56176 203 289 3.54E-24 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 Gene3D G3DSA:3.30.465.10 198 292 1.1E-34 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_07485 81d44765ab7e9f764ee8d0a47de76be9 292 SMART SM01091 205 283 1.1E-30 T 11-10-2018 IPR005170 Transporter-associated domain BED32_13005 0ea8525cf2f66291188081adb02d2181 207 Pfam PF13505 Outer membrane protein beta-barrel domain 8 187 2.9E-9 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel BED32_13005 0ea8525cf2f66291188081adb02d2181 207 SUPERFAMILY SSF56925 20 207 1.57E-10 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_05155 022b5113db18565ad0cb7d1f623f75cf 257 Pfam PF03591 AzlC protein 27 167 5.2E-39 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease BED32_13380 9f21685d797206621e801184e9b41ec7 223 Gene3D G3DSA:3.30.70.20 98 151 3.1E-55 T 11-10-2018 BED32_13380 9f21685d797206621e801184e9b41ec7 223 SUPERFAMILY SSF54862 36 215 1.26E-57 T 11-10-2018 BED32_13380 9f21685d797206621e801184e9b41ec7 223 Pfam PF13247 4Fe-4S dicluster domain 84 181 2.6E-24 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_13380 9f21685d797206621e801184e9b41ec7 223 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 125 136 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_13380 9f21685d797206621e801184e9b41ec7 223 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 4 221 7.7E-118 T 11-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein BED32_13380 9f21685d797206621e801184e9b41ec7 223 Pfam PF12800 4Fe-4S binding domain 45 56 0.089 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_13380 9f21685d797206621e801184e9b41ec7 223 Gene3D G3DSA:3.30.70.20 37 212 3.1E-55 T 11-10-2018 BED32_21010 1999fe9f0ad6544aa273426d71902f38 152 TIGRFAM TIGR00576 dut: dUTP diphosphatase 11 151 2.0E-48 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 BED32_21010 1999fe9f0ad6544aa273426d71902f38 152 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 7 151 34.082 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 BED32_21010 1999fe9f0ad6544aa273426d71902f38 152 Gene3D G3DSA:2.70.40.10 1 151 6.0E-53 T 11-10-2018 IPR036157 dUTPase-like superfamily BED32_21010 1999fe9f0ad6544aa273426d71902f38 152 SUPERFAMILY SSF51283 1 151 3.27E-55 T 11-10-2018 IPR036157 dUTPase-like superfamily BED32_21010 1999fe9f0ad6544aa273426d71902f38 152 Pfam PF00692 dUTPase 17 150 4.4E-42 T 11-10-2018 IPR029054 dUTPase-like BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 PIRSF PIRSF004669 1 89 1.0E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 6 84 2.7E-32 T 11-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.6E-25 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.6E-25 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.6E-25 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_19540 dc45a0ce706d4a5f553755291722a17c 89 Pfam PF01313 Bacterial export proteins, family 3 6 78 8.7E-27 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 Gene3D G3DSA:3.30.230.10 4 167 4.2E-100 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PIRSF PIRSF000676 1 308 8.9E-83 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 Pfam PF08544 GHMP kinases C terminal 218 285 1.9E-8 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 TIGRFAM TIGR00191 thrB: homoserine kinase 2 307 3.4E-112 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 90 101 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PRINTS PR00958 Homoserine kinase signature 254 269 1.3E-32 T 11-10-2018 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PRINTS PR00958 Homoserine kinase signature 175 192 1.3E-32 T 11-10-2018 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PRINTS PR00958 Homoserine kinase signature 137 150 1.3E-32 T 11-10-2018 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PRINTS PR00958 Homoserine kinase signature 9 24 1.3E-32 T 11-10-2018 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 PRINTS PR00958 Homoserine kinase signature 97 112 1.3E-32 T 11-10-2018 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 Hamap MF_00384 Homoserine kinase [thrB]. 4 308 28.225 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 SUPERFAMILY SSF54211 1 178 1.82E-32 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 Pfam PF00288 GHMP kinases N terminal domain 84 150 3.9E-14 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 Gene3D G3DSA:3.30.70.890 168 277 4.2E-100 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_18225 b40bbb3f7eba05fbe1cb677f2646e5e6 309 SUPERFAMILY SSF55060 173 289 1.4E-33 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily BED32_19630 2c24257754572eadd80e74ef4e01dd1e 136 Pfam PF09621 Type III secretion system regulator (LcrR) 10 67 6.3E-5 T 11-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 BED32_05225 6978f5cb1d8f9da5316729f6f8355251 386 SUPERFAMILY SSF53383 9 385 3.19E-99 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_05225 6978f5cb1d8f9da5316729f6f8355251 386 Gene3D G3DSA:3.90.1150.10 20 383 1.5E-141 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_05225 6978f5cb1d8f9da5316729f6f8355251 386 Gene3D G3DSA:3.40.640.10 45 284 1.5E-141 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_05225 6978f5cb1d8f9da5316729f6f8355251 386 Pfam PF00155 Aminotransferase class I and II 32 383 4.7E-62 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_05230 1732fc965f6cf94b777594e677264c81 422 SUPERFAMILY SSF56349 78 398 5.18E-54 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_05230 1732fc965f6cf94b777594e677264c81 422 Gene3D G3DSA:1.10.443.10 195 405 3.9E-37 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_05230 1732fc965f6cf94b777594e677264c81 422 Pfam PF12167 Arm DNA-binding domain 6 69 2.8E-24 T 11-10-2018 IPR022000 Min27-like integrase, DNA-binding domain BED32_05230 1732fc965f6cf94b777594e677264c81 422 Gene3D G3DSA:1.10.150.130 75 192 4.9E-12 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_05230 1732fc965f6cf94b777594e677264c81 422 Pfam PF00589 Phage integrase family 198 388 4.4E-20 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_19170 d2276a522b19e884c0c8a7d9956723d9 489 SUPERFAMILY SSF47203 233 393 1.61E-37 T 11-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 BED32_19170 d2276a522b19e884c0c8a7d9956723d9 489 Gene3D G3DSA:1.20.140.10 218 394 5.7E-36 T 11-10-2018 BED32_19170 d2276a522b19e884c0c8a7d9956723d9 489 SUPERFAMILY SSF56645 79 235 2.11E-12 T 11-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 BED32_19170 d2276a522b19e884c0c8a7d9956723d9 489 Gene3D G3DSA:2.40.110.20 134 209 1.6E-18 T 11-10-2018 BED32_19170 d2276a522b19e884c0c8a7d9956723d9 489 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 235 387 3.0E-29 T 11-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 Pfam PF00920 Dehydratase family 67 597 7.5E-158 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 Gene3D G3DSA:3.50.30.80 419 567 1.5E-48 T 11-10-2018 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 600 0.0 T 11-10-2018 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 SUPERFAMILY SSF52016 419 599 9.42E-56 T 11-10-2018 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 SUPERFAMILY SSF143975 1 418 4.97E-148 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_14500 3b3ae90f9c4791d2766fc046b8292148 602 Hamap MF_02094 Phosphogluconate dehydratase [edd]. 1 601 57.414 T 11-10-2018 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 2 128 28.041 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 PIRSF PIRSF000180 2 130 8.5E-56 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 Pfam PF02300 Fumarate reductase subunit C 3 128 2.3E-53 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 114 5.0E-52 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 SUPERFAMILY SSF81343 2 129 5.56E-56 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19300 fb604c5a7a9c375434e06e3a6fbe40d6 130 Gene3D G3DSA:1.20.1300.10 2 130 1.4E-49 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 SUPERFAMILY SSF55021 250 328 2.63E-11 T 11-10-2018 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 SMART SM00382 30 226 1.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 SUPERFAMILY SSF52540 1 236 2.48E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 Gene3D G3DSA:3.30.70.260 241 328 3.7E-8 T 11-10-2018 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 Pfam PF00005 ABC transporter 21 169 6.5E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 SMART SM00930 251 328 5.1E-15 T 11-10-2018 IPR018449 NIL domain BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 Gene3D G3DSA:3.40.50.300 1 238 2.5E-71 T 11-10-2018 BED32_13990 6492cfaeb4a0b40ae6c947f61b08057a 328 Pfam PF09383 NIL domain 254 326 1.2E-12 T 11-10-2018 IPR018449 NIL domain BED32_04060 482636a4443616f513d413598836302b 349 Gene3D G3DSA:1.10.3290.10 18 263 1.6E-46 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_04060 482636a4443616f513d413598836302b 349 Pfam PF08279 HTH domain 295 345 1.9E-6 T 11-10-2018 IPR013196 Helix-turn-helix, type 11 BED32_04060 482636a4443616f513d413598836302b 349 Pfam PF02661 Fic/DOC family 101 196 9.8E-22 T 11-10-2018 IPR003812 Fido domain BED32_04060 482636a4443616f513d413598836302b 349 Gene3D G3DSA:1.10.10.10 279 347 1.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04060 482636a4443616f513d413598836302b 349 SUPERFAMILY SSF140931 78 255 1.15E-37 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_04060 482636a4443616f513d413598836302b 349 SUPERFAMILY SSF46785 288 348 5.77E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 Pfam PF01514 Secretory protein of YscJ/FliF family 8 191 2.6E-25 T 11-10-2018 IPR006182 Secretory protein YscJ/FliF BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 Gene3D G3DSA:3.30.300.30 98 193 9.5E-33 T 11-10-2018 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 97 112 8.7E-20 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 117 130 8.7E-20 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 77 90 8.7E-20 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 164 176 8.7E-20 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 PRINTS PR01338 Type III secretion system outer membrane K protein family signature 25 35 8.7E-20 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 Gene3D G3DSA:3.30.70.1530 21 91 3.1E-28 T 11-10-2018 BED32_19595 a69053b06a558190b2d311c3c0af8cc8 243 TIGRFAM TIGR02544 III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family 5 192 1.3E-71 T 11-10-2018 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ GO:0009306 BED32_09635 170226d8eea06c4cbd0d512177d0808d 71 Pfam PF04606 Ogr/Delta-like zinc finger 3 49 4.2E-18 T 11-10-2018 IPR007684 Zinc finger, Ogr/Delta-type BED32_02740 ebf9203bb2561b9c0d827d79de8200ef 157 Pfam PF02413 Caudovirales tail fibre assembly protein, lambda gpK 74 154 2.6E-17 T 11-10-2018 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly BED32_08975 62a4cabd999fa682428d84465484aa31 189 Pfam PF13847 Methyltransferase domain 30 103 1.3E-7 T 11-10-2018 IPR025714 Methyltransferase domain BED32_08975 62a4cabd999fa682428d84465484aa31 189 SUPERFAMILY SSF53335 3 146 2.34E-26 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_08975 62a4cabd999fa682428d84465484aa31 189 Gene3D G3DSA:3.40.50.150 1 189 1.5E-58 T 11-10-2018 BED32_08975 62a4cabd999fa682428d84465484aa31 189 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 13 132 5.1E-38 T 11-10-2018 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00860+2.1.1.196|MetaCyc: PWY-7377 BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 PIRSF PIRSF036407 1 347 4.2E-119 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 Gene3D G3DSA:3.30.1330.10 2 162 2.6E-47 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 335 3.9E-28 T 11-10-2018 IPR010918 PurM-like, C-terminal domain BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 Gene3D G3DSA:3.90.650.10 164 347 7.2E-52 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 SUPERFAMILY SSF55326 7 160 2.84E-40 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 TIGRFAM TIGR00476 selD: selenide, water dikinase 7 313 6.6E-137 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 Hamap MF_00625 Selenide, water dikinase [selD]. 5 347 45.571 T 11-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 Pfam PF00586 AIR synthase related protein, N-terminal domain 50 157 3.0E-18 T 11-10-2018 IPR016188 PurM-like, N-terminal domain BED32_12205 8bd815db2fd7e69f56b56862a501409f 348 SUPERFAMILY SSF56042 165 334 2.84E-49 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_10430 0e415c58eb939bb02d24c430ce689f88 165 Pfam PF13185 GAF domain 39 147 1.3E-9 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_10430 0e415c58eb939bb02d24c430ce689f88 165 SMART SM00065 9 161 0.0067 T 11-10-2018 IPR003018 GAF domain GO:0005515 BED32_10430 0e415c58eb939bb02d24c430ce689f88 165 SUPERFAMILY SSF55781 2 151 9.38E-41 T 11-10-2018 BED32_10430 0e415c58eb939bb02d24c430ce689f88 165 Gene3D G3DSA:3.30.450.40 1 165 9.9E-66 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 367 6.2E-214 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 Gene3D G3DSA:3.30.360.10 135 350 4.4E-151 T 11-10-2018 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 SUPERFAMILY SSF51735 1 147 1.15E-53 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 33.924 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 SMART SM00859 3 122 3.5E-24 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 6.6E-58 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 SUPERFAMILY SSF55347 134 354 6.55E-79 T 11-10-2018 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 2.0E-23 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 PIRSF PIRSF000148 1 367 6.7E-68 T 11-10-2018 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 BED32_01380 31cd2a3ef5fbaab3708bfe88e38795e4 367 Gene3D G3DSA:3.40.50.720 4 356 4.4E-151 T 11-10-2018 BED32_02940 60ee064d416aa8162373e2b9997945d0 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 4 186 27.716 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BED32_02940 60ee064d416aa8162373e2b9997945d0 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 7 183 4.6E-56 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BED32_02940 60ee064d416aa8162373e2b9997945d0 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 184 1.7E-54 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related BED32_02940 60ee064d416aa8162373e2b9997945d0 187 PIRSF PIRSF028513 1 187 3.9E-40 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 BED32_02940 60ee064d416aa8162373e2b9997945d0 187 Gene3D G3DSA:2.60.450.10 60 187 1.2E-49 T 11-10-2018 BED32_19660 a23bb373cc36755b89136d152a35fa13 71 Pfam PF08988 Type III secretion system, cytoplasmic E component of needle 4 69 8.7E-19 T 11-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 BED32_19660 a23bb373cc36755b89136d152a35fa13 71 TIGRFAM TIGR02501 type_III_yscE: type III secretion system protein, YseE family 4 70 7.2E-12 T 11-10-2018 IPR012671 Type III secretion system, secretion protein E GO:0009405 BED32_09390 98918bde67c952f34f719988bf67d0a8 211 Pfam PF06551 Protein of unknown function (DUF1120) 29 102 4.1E-9 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 BED32_03640 923f5ab094fef9837ad8e5e30df45bfd 453 Pfam PF00263 Bacterial type II and III secretion system protein 248 405 4.1E-38 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 BED32_03640 923f5ab094fef9837ad8e5e30df45bfd 453 PRINTS PR00811 Bacterial general secretion pathway protein D signature 370 388 1.3E-5 T 11-10-2018 IPR001775 GspD/PilQ family BED32_03640 923f5ab094fef9837ad8e5e30df45bfd 453 PRINTS PR00811 Bacterial general secretion pathway protein D signature 193 203 1.3E-5 T 11-10-2018 IPR001775 GspD/PilQ family BED32_03640 923f5ab094fef9837ad8e5e30df45bfd 453 Pfam PF13629 Pilus formation protein N terminal region 32 101 1.0E-11 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal BED32_06270 01d17253943c3167530a811154619825 51 Pfam PF10689 Protein of unknown function (DUF2496) 2 44 1.0E-22 T 11-10-2018 IPR019630 Protein of unknown function DUF2496, YbaM-related BED32_08590 895e9bb55772f37fffdaa7578cd2626e 370 Hamap MF_02040 Iron-sulfur cluster carrier protein. 102 351 37.096 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein BED32_08590 895e9bb55772f37fffdaa7578cd2626e 370 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 107 350 1.9E-100 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 BED32_08590 895e9bb55772f37fffdaa7578cd2626e 370 SUPERFAMILY SSF52540 109 356 5.0E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08590 895e9bb55772f37fffdaa7578cd2626e 370 ProSitePatterns PS01215 Mrp family signature. 214 230 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 BED32_08590 895e9bb55772f37fffdaa7578cd2626e 370 Gene3D G3DSA:3.40.50.300 96 349 8.5E-81 T 11-10-2018 BED32_18510 81441ff849a3bcf227734a58419cfce4 210 Gene3D G3DSA:1.25.40.340 1 209 7.6E-72 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BED32_18510 81441ff849a3bcf227734a58419cfce4 210 SMART SM01120 32 206 2.2E-81 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BED32_18510 81441ff849a3bcf227734a58419cfce4 210 SUPERFAMILY SSF101473 3 206 3.53E-58 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BED32_18510 81441ff849a3bcf227734a58419cfce4 210 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 205 2.3E-77 T 11-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 BED32_18510 81441ff849a3bcf227734a58419cfce4 210 Pfam PF02734 DAK2 domain 32 205 3.6E-55 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BED32_19955 f284ee307b8547b96dab4d66ff1140fd 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 84 466 2.0E-126 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 BED32_19955 f284ee307b8547b96dab4d66ff1140fd 483 PIRSF PIRSF006247 1 483 9.3E-183 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 BED32_19955 f284ee307b8547b96dab4d66ff1140fd 483 Pfam PF02386 Cation transport protein 37 477 1.3E-91 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 BED32_02195 c11b16050ac361619462faeb92696ef6 369 Gene3D G3DSA:2.40.50.140 292 345 1.2E-29 T 11-10-2018 BED32_02195 c11b16050ac361619462faeb92696ef6 369 Gene3D G3DSA:3.40.50.300 1 236 2.9E-70 T 11-10-2018 BED32_02195 c11b16050ac361619462faeb92696ef6 369 SUPERFAMILY SSF50331 234 362 3.16E-31 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_02195 c11b16050ac361619462faeb92696ef6 369 Pfam PF00005 ABC transporter 20 159 1.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02195 c11b16050ac361619462faeb92696ef6 369 SMART SM00382 28 209 2.9E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_02195 c11b16050ac361619462faeb92696ef6 369 SUPERFAMILY SSF52540 4 241 3.84E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02195 c11b16050ac361619462faeb92696ef6 369 Pfam PF08402 TOBE domain 281 353 6.3E-11 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_02195 c11b16050ac361619462faeb92696ef6 369 Gene3D G3DSA:2.40.50.100 237 291 1.2E-19 T 11-10-2018 BED32_12600 a76b75a4c03bd399f398550c7784463b 314 Gene3D G3DSA:1.10.443.10 130 298 2.8E-48 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_12600 a76b75a4c03bd399f398550c7784463b 314 Pfam PF00589 Phage integrase family 135 280 9.7E-21 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_12600 a76b75a4c03bd399f398550c7784463b 314 SUPERFAMILY SSF56349 21 288 1.53E-47 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 SUPERFAMILY SSF55874 324 473 1.27E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 Gene3D G3DSA:3.30.565.10 324 478 9.8E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 428 9.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 435 453 9.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 414 9.6E-9 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 364 474 5.0E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 SMART SM00388 252 320 8.3E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 Gene3D G3DSA:1.10.287.130 196 316 6.3E-17 T 11-10-2018 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 316 9.1E-13 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 SUPERFAMILY SSF47384 235 316 1.35E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_16170 bcbe1d0742c2a8426c20e1c2b0892ee6 478 SMART SM00387 363 475 9.6E-28 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_17770 aee20d6cdd19734b14c602271513c871 254 SUPERFAMILY SSF46785 5 76 2.45E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_17770 aee20d6cdd19734b14c602271513c871 254 SUPERFAMILY SSF48008 95 235 8.63E-22 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_17770 aee20d6cdd19734b14c602271513c871 254 Gene3D G3DSA:1.10.10.10 1 75 5.4E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17770 aee20d6cdd19734b14c602271513c871 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 2.7E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_17770 aee20d6cdd19734b14c602271513c871 254 SMART SM00345 15 74 1.6E-26 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_17770 aee20d6cdd19734b14c602271513c871 254 Gene3D G3DSA:1.20.120.530 97 236 1.2E-29 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_17770 aee20d6cdd19734b14c602271513c871 254 Pfam PF07729 FCD domain 99 226 2.5E-19 T 11-10-2018 IPR011711 GntR, C-terminal BED32_17770 aee20d6cdd19734b14c602271513c871 254 SMART SM00895 99 227 1.6E-19 T 11-10-2018 IPR011711 GntR, C-terminal BED32_17770 aee20d6cdd19734b14c602271513c871 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_17770 aee20d6cdd19734b14c602271513c871 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.0E-9 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_20110 964685ceb4fb137d8cb59aa1f344ffa3 161 Gene3D G3DSA:2.60.40.2040 19 160 4.6E-12 T 11-10-2018 BED32_20110 964685ceb4fb137d8cb59aa1f344ffa3 161 Pfam PF04449 CS1 type fimbrial major subunit 26 157 6.1E-17 T 11-10-2018 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 BED32_15195 38813a96962a8724aa17f04a9747ffd8 161 SUPERFAMILY SSF143100 18 82 9.94E-5 T 11-10-2018 IPR035069 TTHA1013/TTHA0281-like BED32_15195 38813a96962a8724aa17f04a9747ffd8 161 Pfam PF15970 HicB_like antitoxin of bacterial toxin-antitoxin system 22 101 3.1E-40 T 11-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system BED32_18700 54c9ab16505f9abb961e0e1762501f0e 236 SUPERFAMILY SSF52540 1 227 3.18E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18700 54c9ab16505f9abb961e0e1762501f0e 236 Gene3D G3DSA:3.40.50.300 1 234 6.7E-74 T 11-10-2018 BED32_18700 54c9ab16505f9abb961e0e1762501f0e 236 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18700 54c9ab16505f9abb961e0e1762501f0e 236 SMART SM00382 30 218 6.3E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18700 54c9ab16505f9abb961e0e1762501f0e 236 Pfam PF00005 ABC transporter 22 169 7.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18385 121a0b01e11cb59d6790dd254282f1cc 147 Gene3D G3DSA:3.40.630.30 1 147 2.0E-45 T 11-10-2018 BED32_18385 121a0b01e11cb59d6790dd254282f1cc 147 Pfam PF00583 Acetyltransferase (GNAT) family 15 120 4.5E-16 T 11-10-2018 IPR000182 GNAT domain BED32_18385 121a0b01e11cb59d6790dd254282f1cc 147 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 142 3.4E-44 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 BED32_18385 121a0b01e11cb59d6790dd254282f1cc 147 SUPERFAMILY SSF55729 3 145 8.87E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 1.0E-17 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 28.818 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 Pfam PF01016 Ribosomal L27 protein 2 82 3.4E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 SUPERFAMILY SSF110324 2 79 1.05E-33 T 11-10-2018 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 3.1E-42 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 4.6E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 4.6E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 4.6E-38 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 Gene3D G3DSA:2.40.50.100 21 85 5.7E-30 T 11-10-2018 BED32_19010 dead036fc3a26c259f7876fa50adbec6 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_14110 f950383f3652921834a14939acf2fdc1 826 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 62 823 0.0 T 11-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 BED32_14110 f950383f3652921834a14939acf2fdc1 826 SUPERFAMILY SSF53706 63 683 7.72E-171 T 11-10-2018 BED32_14110 f950383f3652921834a14939acf2fdc1 826 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 506 523 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 BED32_14110 f950383f3652921834a14939acf2fdc1 826 Gene3D G3DSA:3.40.50.740 105 572 3.1E-235 T 11-10-2018 BED32_14110 f950383f3652921834a14939acf2fdc1 826 SUPERFAMILY SSF50692 676 820 4.52E-38 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily BED32_14110 f950383f3652921834a14939acf2fdc1 826 Gene3D G3DSA:3.40.228.10 198 649 3.1E-235 T 11-10-2018 BED32_14110 f950383f3652921834a14939acf2fdc1 826 Gene3D G3DSA:2.40.40.20 657 820 3.0E-49 T 11-10-2018 BED32_14110 f950383f3652921834a14939acf2fdc1 826 Gene3D G3DSA:3.90.55.10 61 623 3.1E-235 T 11-10-2018 BED32_14110 f950383f3652921834a14939acf2fdc1 826 Pfam PF00384 Molybdopterin oxidoreductase 105 563 6.9E-94 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_14110 f950383f3652921834a14939acf2fdc1 826 Pfam PF01568 Molydopterin dinucleotide binding domain 683 797 4.0E-24 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 BED32_06360 6ccfe06413eec1deed8c52235a3190c7 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 260 2.0E-55 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_06360 6ccfe06413eec1deed8c52235a3190c7 336 SUPERFAMILY SSF51735 1 334 1.16E-92 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_06360 6ccfe06413eec1deed8c52235a3190c7 336 Gene3D G3DSA:3.90.25.10 194 327 1.7E-134 T 11-10-2018 BED32_06360 6ccfe06413eec1deed8c52235a3190c7 336 Gene3D G3DSA:3.40.50.720 3 272 1.7E-134 T 11-10-2018 BED32_06360 6ccfe06413eec1deed8c52235a3190c7 336 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 333 1.6E-132 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 BED32_09920 887ed16de81ecefdaca3b3be015da560 369 Pfam PF01699 Sodium/calcium exchanger protein 42 192 2.0E-13 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BED32_09920 887ed16de81ecefdaca3b3be015da560 369 Pfam PF01699 Sodium/calcium exchanger protein 227 366 1.8E-7 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 BED32_09920 887ed16de81ecefdaca3b3be015da560 369 TIGRFAM TIGR00846 caca2: calcium/proton exchanger 11 367 3.4E-103 T 11-10-2018 IPR004713 Calcium/proton exchanger GO:0006812|GO:0008324|GO:0016021|GO:0055085 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 SUPERFAMILY SSF159672 6 238 1.44E-58 T 11-10-2018 IPR038029 GbiG N-terminal domain superfamily KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 SUPERFAMILY SSF159664 225 349 2.22E-30 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 Gene3D G3DSA:3.40.50.11220 6 129 2.7E-30 T 11-10-2018 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 Gene3D G3DSA:3.30.420.180 222 350 1.7E-28 T 11-10-2018 IPR036518 CobE/GbiG C-terminal domain superfamily GO:0009236 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 Pfam PF01890 Cobalamin synthesis G C-terminus 231 346 5.6E-22 T 11-10-2018 IPR002750 CobE/GbiG C-terminal domain GO:0009236 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 Pfam PF11761 Cobalamin biosynthesis central region 140 215 9.2E-8 T 11-10-2018 IPR021745 Cobalamin biosynthesis central region KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BED32_08985 e7725cee1a526e9c5048983c7bb5a5b3 351 Pfam PF11760 Cobalamin synthesis G N-terminal 54 134 7.6E-35 T 11-10-2018 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 8 441 4.6E-126 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Gene3D G3DSA:3.40.1190.10 94 305 1.1E-79 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 443 34.877 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 SUPERFAMILY SSF53623 95 303 1.7E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 SUPERFAMILY SSF53244 305 443 1.19E-50 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 363 4.1E-8 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Pfam PF08245 Mur ligase middle domain 110 286 6.0E-28 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Gene3D G3DSA:3.90.190.20 306 440 6.4E-45 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 SUPERFAMILY SSF51984 3 94 6.93E-25 T 11-10-2018 BED32_17890 7d3a70e670f008dcc21dcb93b7fc0dd6 444 Gene3D G3DSA:3.40.50.720 2 93 7.2E-26 T 11-10-2018 BED32_15950 f6a5125ed69851c506875454de10a9dd 316 Pfam PF03547 Membrane transport protein 14 148 1.3E-8 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BED32_15950 f6a5125ed69851c506875454de10a9dd 316 Pfam PF03547 Membrane transport protein 166 305 1.9E-10 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 5.3E-19 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 187 200 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 15 217 38.101 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 4 217 4.3E-93 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 SUPERFAMILY SSF50475 20 217 6.55E-67 T 11-10-2018 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 39 121 8.2E-23 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 Gene3D G3DSA:2.30.110.10 19 217 2.7E-76 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BED32_10980 966d52c2c7524ad648c0bbbea86ddf16 217 PIRSF PIRSF000190 1 217 8.9E-81 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_05965 4ef6bc80a0191033543dbf227e8353e7 117 Gene3D G3DSA:1.10.940.10 1 117 1.4E-41 T 11-10-2018 IPR035926 NusB-like superfamily BED32_05965 4ef6bc80a0191033543dbf227e8353e7 117 Pfam PF01029 NusB family 10 110 2.5E-30 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 BED32_05965 4ef6bc80a0191033543dbf227e8353e7 117 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 1 114 18.428 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 BED32_05965 4ef6bc80a0191033543dbf227e8353e7 117 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 2 111 4.9E-37 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 BED32_05965 4ef6bc80a0191033543dbf227e8353e7 117 SUPERFAMILY SSF48013 3 114 1.57E-34 T 11-10-2018 IPR035926 NusB-like superfamily BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 Pfam PF00696 Amino acid kinase family 18 259 3.3E-32 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 Pfam PF00583 Acetyltransferase (GNAT) family 328 405 2.5E-7 T 11-10-2018 IPR000182 GNAT domain BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 434 238.507 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 PIRSF PIRSF000423 1 434 8.9E-210 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 Gene3D G3DSA:3.40.1160.10 1 285 5.7E-86 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 SUPERFAMILY SSF55729 228 409 5.23E-19 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 SUPERFAMILY SSF53633 2 283 1.4E-69 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 Gene3D G3DSA:3.40.630.30 286 434 1.4E-38 T 11-10-2018 BED32_17015 9cffaf933770c699aa9efa7641b829e8 434 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 1 433 8.6E-202 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 BED32_01805 fbf0d0c300aa804da76da8911c62c4f0 194 Gene3D G3DSA:2.40.10.330 71 121 2.4E-59 T 11-10-2018 BED32_01805 fbf0d0c300aa804da76da8911c62c4f0 194 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 4.2E-8 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BED32_01805 fbf0d0c300aa804da76da8911c62c4f0 194 Gene3D G3DSA:3.10.50.40 3 154 2.4E-59 T 11-10-2018 BED32_01805 fbf0d0c300aa804da76da8911c62c4f0 194 SUPERFAMILY SSF54534 2 140 7.07E-32 T 11-10-2018 BED32_16470 c9e6480218cd3df9e243d9319a7b87d1 228 Gene3D G3DSA:1.10.4190.10 2 204 1.2E-41 T 11-10-2018 IPR038277 UreF domain superfamily BED32_16470 c9e6480218cd3df9e243d9319a7b87d1 228 Pfam PF01730 UreF 37 185 4.4E-22 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BED32_16470 c9e6480218cd3df9e243d9319a7b87d1 228 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 228 22.134 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BED32_16470 c9e6480218cd3df9e243d9319a7b87d1 228 PIRSF PIRSF009467 2 228 3.5E-59 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 BED32_09825 9cc813129b72ecd458bb1125a9f09096 133 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 126 1.4E-44 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB BED32_09825 9cc813129b72ecd458bb1125a9f09096 133 PIRSF PIRSF005610 1 125 7.8E-28 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB BED32_04120 ef0551570adcc3206519c72b631668c9 349 Gene3D G3DSA:3.90.245.10 1 326 1.4E-77 T 11-10-2018 IPR036452 Ribonucleoside hydrolase-like BED32_04120 ef0551570adcc3206519c72b631668c9 349 SUPERFAMILY SSF53590 2 322 2.49E-69 T 11-10-2018 IPR036452 Ribonucleoside hydrolase-like BED32_04120 ef0551570adcc3206519c72b631668c9 349 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 2 316 7.3E-61 T 11-10-2018 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 SUPERFAMILY SSF55874 186 349 4.71E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 Gene3D G3DSA:1.10.287.130 87 197 3.7E-18 T 11-10-2018 BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 SMART SM00387 242 351 1.1E-24 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 SMART SM00388 136 196 3.6E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 Pfam PF00512 His Kinase A (phospho-acceptor) domain 138 195 6.2E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 349 7.4E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 Gene3D G3DSA:3.30.565.10 205 352 1.7E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 279 293 2.8E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 PRINTS PR00344 Bacterial sensor protein C-terminal signature 310 328 2.8E-7 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_18995 6b1597e16a3ea67c2b84af7e3f24d111 353 SUPERFAMILY SSF47384 121 194 4.12E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_03530 b6266ac80eca1ac2ddbf006c9620c0e3 101 Gene3D G3DSA:3.30.70.100 1 101 3.8E-27 T 11-10-2018 BED32_03530 b6266ac80eca1ac2ddbf006c9620c0e3 101 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 84 7.5E-17 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BED32_03530 b6266ac80eca1ac2ddbf006c9620c0e3 101 SUPERFAMILY SSF54909 1 97 9.91E-29 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 SUPERFAMILY SSF75217 1 143 3.3E-45 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 144 21.98 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 Pfam PF02590 Predicted SPOUT methyltransferase 2 143 2.5E-42 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 PIRSF PIRSF004505 1 144 6.8E-37 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 Gene3D G3DSA:3.40.1280.10 1 145 2.4E-47 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_07420 0296ab2fd0206b8ca3619468ca8d575d 145 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 145 4.3E-76 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 BED32_01310 de10655aa7ecebae8fdd1ec94e757618 404 Gene3D G3DSA:1.20.1250.20 221 399 1.8E-18 T 11-10-2018 BED32_01310 de10655aa7ecebae8fdd1ec94e757618 404 Pfam PF07690 Major Facilitator Superfamily 28 332 1.0E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_01310 de10655aa7ecebae8fdd1ec94e757618 404 Gene3D G3DSA:1.20.1250.20 22 220 5.1E-21 T 11-10-2018 BED32_01310 de10655aa7ecebae8fdd1ec94e757618 404 SUPERFAMILY SSF103473 23 398 1.15E-49 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_01150 50f2b09bcd37d4dff9ea264abaa35d1d 148 Pfam PF00582 Universal stress protein family 3 138 2.9E-20 T 11-10-2018 IPR006016 UspA BED32_01150 50f2b09bcd37d4dff9ea264abaa35d1d 148 Gene3D G3DSA:3.40.50.620 2 142 1.3E-50 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_01150 50f2b09bcd37d4dff9ea264abaa35d1d 148 PIRSF PIRSF006276 1 141 7.7E-54 T 11-10-2018 IPR006015 Universal stress protein A BED32_01150 50f2b09bcd37d4dff9ea264abaa35d1d 148 SUPERFAMILY SSF52402 3 139 4.6E-31 T 11-10-2018 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 Gene3D G3DSA:1.10.287.950 214 516 9.7E-95 T 11-10-2018 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 SMART SM00319 44 180 6.5E-31 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 482 7.8E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 SMART SM00304 214 266 2.4E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 Gene3D G3DSA:1.20.120.30 22 191 1.3E-42 T 11-10-2018 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 SUPERFAMILY SSF58104 234 515 5.75E-76 T 11-10-2018 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 Pfam PF02203 Tar ligand binding domain homologue 1 170 3.8E-50 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 191 211 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 442 471 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 288 317 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 365 392 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 394 423 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 60 75 1.3E-80 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 SUPERFAMILY SSF47170 25 177 2.49E-41 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 SMART SM00283 267 514 2.5E-100 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_09545 c9669a8df37be005b7fc03645b065a1b 545 Pfam PF00672 HAMP domain 217 262 1.1E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_09830 9db6cbdb0ab8caa9e3b0b3ca61a7257c 269 SUPERFAMILY SSF48452 190 258 1.99E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_09830 9db6cbdb0ab8caa9e3b0b3ca61a7257c 269 Pfam PF13369 Transglutaminase-like superfamily 33 184 8.6E-42 T 11-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 BED32_09830 9db6cbdb0ab8caa9e3b0b3ca61a7257c 269 Pfam PF13371 Tetratricopeptide repeat 187 258 1.4E-25 T 11-10-2018 BED32_19295 a29f512fc8a463d015fbff055711a500 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 1.2E-31 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19295 a29f512fc8a463d015fbff055711a500 244 Gene3D G3DSA:3.10.20.30 3 106 1.3E-34 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_19295 a29f512fc8a463d015fbff055711a500 244 SUPERFAMILY SSF54292 4 106 1.62E-29 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_19295 a29f512fc8a463d015fbff055711a500 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_19295 a29f512fc8a463d015fbff055711a500 244 Pfam PF13183 4Fe-4S dicluster domain 146 219 8.1E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_19295 a29f512fc8a463d015fbff055711a500 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 6.3E-98 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_19295 a29f512fc8a463d015fbff055711a500 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 BED32_19295 a29f512fc8a463d015fbff055711a500 244 Gene3D G3DSA:1.10.1060.10 107 244 6.2E-52 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_19295 a29f512fc8a463d015fbff055711a500 244 SUPERFAMILY SSF46548 107 229 1.43E-31 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Gene3D G3DSA:3.30.465.10 72 221 1.9E-53 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 SUPERFAMILY SSF56194 205 342 7.72E-52 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 SUPERFAMILY SSF56176 7 194 4.53E-44 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Gene3D G3DSA:3.30.43.10 7 71 1.0E-15 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Pfam PF01565 FAD binding domain 22 153 1.8E-24 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 345 87.688 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 332 2.5E-34 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 Gene3D G3DSA:3.90.78.10 222 345 5.4E-46 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_19915 3eb1c6f4e8b4e550267b3cdf417824ff 345 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 8 332 1.2E-105 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_03085 3a62d5b45d577ec7ea1a09c097f4602e 117 Pfam PF02021 Uncharacterised protein family UPF0102 10 102 3.7E-23 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 BED32_03085 3a62d5b45d577ec7ea1a09c097f4602e 117 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 3 116 4.7E-40 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 BED32_03085 3a62d5b45d577ec7ea1a09c097f4602e 117 Gene3D G3DSA:3.40.1350.10 10 117 4.2E-30 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 BED32_03085 3a62d5b45d577ec7ea1a09c097f4602e 117 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 115 22.793 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 BED32_03085 3a62d5b45d577ec7ea1a09c097f4602e 117 SUPERFAMILY SSF52980 4 113 7.19E-22 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 BED32_20370 8aeb91e4b0b3eb3e888d03e777ca73c2 847 Pfam PF12633 Adenylate cyclase NT domain 5 200 3.5E-80 T 11-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 BED32_20370 8aeb91e4b0b3eb3e888d03e777ca73c2 847 Pfam PF01295 Adenylate cyclase, class-I 228 825 5.4E-262 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 BED32_20370 8aeb91e4b0b3eb3e888d03e777ca73c2 847 ProSitePatterns PS01092 Adenylate cyclase class-I signature 1. 242 253 - T 11-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 BED32_20370 8aeb91e4b0b3eb3e888d03e777ca73c2 847 PIRSF PIRSF001444 1 847 0.0 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 BED32_20370 8aeb91e4b0b3eb3e888d03e777ca73c2 847 ProSitePatterns PS01093 Adenylate cyclase class-I signature 2. 598 612 - T 11-10-2018 IPR024686 Adenylate cyclase class-I, conserved site KEGG: 00230+4.6.1.1 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Pfam PF00549 CoA-ligase 262 382 4.4E-24 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 SUPERFAMILY SSF52210 239 385 5.1E-53 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 PIRSF PIRSF001554 1 388 3.3E-155 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Pfam PF08442 ATP-grasp domain 2 203 3.1E-83 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Gene3D G3DSA:3.30.1490.20 21 104 9.8E-98 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 43.42 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 384 3.9E-182 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Gene3D G3DSA:3.40.50.261 240 387 1.4E-55 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 SUPERFAMILY SSF56059 1 238 6.36E-81 T 11-10-2018 BED32_07770 bc3c6204acd10fc8d720ff95120f3fc7 388 Gene3D G3DSA:3.30.470.20 1 234 9.8E-98 T 11-10-2018 BED32_08285 bc516ad067fad449370fca394a7f38c8 247 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 48 61 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_08285 bc516ad067fad449370fca394a7f38c8 247 SUPERFAMILY SSF53850 8 244 1.09E-73 T 11-10-2018 BED32_08285 bc516ad067fad449370fca394a7f38c8 247 Gene3D G3DSA:3.40.190.10 35 242 3.7E-83 T 11-10-2018 BED32_08285 bc516ad067fad449370fca394a7f38c8 247 SMART SM00079 26 244 2.2E-7 T 11-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 BED32_08285 bc516ad067fad449370fca394a7f38c8 247 Gene3D G3DSA:3.40.190.10 110 205 3.7E-83 T 11-10-2018 BED32_08285 bc516ad067fad449370fca394a7f38c8 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 243 3.7E-67 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_08285 bc516ad067fad449370fca394a7f38c8 247 SMART SM00062 26 245 2.0E-70 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 Pfam PF13307 Helicase C-terminal domain 467 624 3.5E-34 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 Gene3D G3DSA:3.40.50.300 449 640 9.2E-36 T 11-10-2018 BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 Gene3D G3DSA:3.40.50.300 26 291 6.0E-46 T 11-10-2018 BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 Pfam PF06733 DEAD_2 189 255 1.6E-4 T 11-10-2018 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 SMART SM00487 24 350 0.0041 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 SUPERFAMILY SSF52540 21 240 3.26E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 SUPERFAMILY SSF52540 48 604 2.28E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10270 ea08a0b4dc596fb73f8e3b50087971e0 642 SMART SM00491 482 611 2.4E-54 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 10 214 32.417 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Pfam PF14520 Helix-hairpin-helix domain 81 139 4.7E-18 T 11-10-2018 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 10 214 1.5E-66 T 11-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Gene3D G3DSA:1.10.8.10 168 214 5.5E-22 T 11-10-2018 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 SUPERFAMILY SSF50249 11 72 1.14E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 SMART SM00278 82 101 0.054 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 SMART SM00278 117 136 0.15 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 SUPERFAMILY SSF46929 169 212 7.46E-10 T 11-10-2018 IPR036267 RuvA, C-terminal domain superfamily BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Gene3D G3DSA:1.10.150.20 76 151 1.5E-30 T 11-10-2018 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 SUPERFAMILY SSF47781 75 145 4.89E-23 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Gene3D G3DSA:2.40.50.140 10 75 7.7E-26 T 11-10-2018 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Pfam PF07499 RuvA, C-terminal domain 171 212 1.7E-13 T 11-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 BED32_10185 2c6b71b964cc0edf0993d51546dd25cd 214 Pfam PF01330 RuvA N terminal domain 11 71 2.4E-18 T 11-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 SUPERFAMILY SSF55904 572 719 8.11E-46 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Gene3D G3DSA:3.40.640.10 109 420 2.2E-85 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 PIRSF PIRSF009393 1 720 1.1E-289 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 SUPERFAMILY SSF53383 109 567 2.94E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 718 0.0 T 11-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 4 103 2.7E-20 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Gene3D G3DSA:3.90.100.10 601 720 3.9E-41 T 11-10-2018 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 548 1.4E-193 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 705 1.4E-48 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Gene3D G3DSA:3.40.50.220 1 108 1.4E-22 T 11-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 SUPERFAMILY SSF52172 1 108 2.88E-30 T 11-10-2018 IPR011006 CheY-like superfamily BED32_04280 d21b8f301ed82e4fbb3ef7a4fd73559f 720 Gene3D G3DSA:3.90.1150.10 421 600 1.8E-71 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_08155 8287ae718abe1f2078fe28a18f7f8dea 278 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 37 278 1.9E-110 T 11-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD BED32_08155 8287ae718abe1f2078fe28a18f7f8dea 278 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 255 277 5.1E-9 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal BED32_08155 8287ae718abe1f2078fe28a18f7f8dea 278 Pfam PF00005 ABC transporter 53 207 2.5E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08155 8287ae718abe1f2078fe28a18f7f8dea 278 SUPERFAMILY SSF52540 36 276 4.11E-56 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08155 8287ae718abe1f2078fe28a18f7f8dea 278 Gene3D G3DSA:3.40.50.300 21 276 1.6E-55 T 11-10-2018 BED32_15065 280081f131d8db1719577fa85ee3d067 64 Gene3D G3DSA:1.10.238.160 4 61 1.4E-5 T 11-10-2018 BED32_15065 280081f131d8db1719577fa85ee3d067 64 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 4 53 3.0E-21 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA BED32_04835 33cc58fb70cd8b813705e791cd78eab3 239 Gene3D G3DSA:3.40.50.300 1 235 2.3E-58 T 11-10-2018 BED32_04835 33cc58fb70cd8b813705e791cd78eab3 239 SMART SM00382 30 201 1.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04835 33cc58fb70cd8b813705e791cd78eab3 239 SUPERFAMILY SSF52540 4 230 2.5E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04835 33cc58fb70cd8b813705e791cd78eab3 239 Pfam PF00005 ABC transporter 21 167 3.6E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 125 143 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 TIGRFAM TIGR01273 speA: arginine decarboxylase 32 657 6.1E-269 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 302 315 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PIRSF PIRSF001336 17 659 3.0E-253 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 Gene3D G3DSA:1.20.58.930 387 482 1.6E-232 T 11-10-2018 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 Gene3D G3DSA:3.20.20.10 94 370 1.6E-232 T 11-10-2018 IPR029066 PLP-binding barrel BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 264 277 8.7E-19 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 125 143 8.7E-19 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 358 377 8.7E-19 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 147 159 8.7E-19 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 567 580 8.7E-19 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 SUPERFAMILY SSF50621 482 588 3.03E-8 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 93 108 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 567 588 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 221 243 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 348 365 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 489 510 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 197 218 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 117 131 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 514 539 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 PRINTS PR01180 Arginine decarboxylase signature 171 186 3.0E-73 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 101 368 2.1E-67 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 28 658 42.497 T 11-10-2018 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 SUPERFAMILY SSF51419 93 370 4.49E-67 T 11-10-2018 IPR029066 PLP-binding barrel BED32_04425 ff2b33488b4330335c3cc5c718a731ea 659 Gene3D G3DSA:2.40.37.10 39 591 1.6E-232 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 BED32_17290 bd5eff477300d989e756e0c44e98d511 98 Gene3D G3DSA:3.30.2310.40 1 98 1.9E-40 T 11-10-2018 IPR038493 Toxin MqsR superfamily BED32_17290 bd5eff477300d989e756e0c44e98d511 98 Pfam PF15723 Motility quorum-sensing regulator, toxin of MqsA 5 97 2.1E-32 T 11-10-2018 IPR031451 mRNA interferase toxin MqsR GO:0009372|GO:0017148|GO:0044010 BED32_11450 07dee550043cb4ee27fa0fcf066c02ba 392 Gene3D G3DSA:3.40.640.10 42 284 1.2E-126 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_11450 07dee550043cb4ee27fa0fcf066c02ba 392 SUPERFAMILY SSF53383 1 384 1.46E-87 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_11450 07dee550043cb4ee27fa0fcf066c02ba 392 Gene3D G3DSA:3.90.1150.10 32 379 1.2E-126 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_11450 07dee550043cb4ee27fa0fcf066c02ba 392 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 4 385 1.1E-114 T 11-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 BED32_11450 07dee550043cb4ee27fa0fcf066c02ba 392 Pfam PF00155 Aminotransferase class I and II 30 380 7.3E-52 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_13555 3140680aea0db50d37049beae4366969 371 SUPERFAMILY SSF56935 23 371 5.95E-83 T 11-10-2018 BED32_13555 3140680aea0db50d37049beae4366969 371 Gene3D G3DSA:2.40.160.10 23 371 3.1E-152 T 11-10-2018 IPR023614 Porin domain superfamily BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 52 70 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 97 119 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 152 174 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 278 297 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 247 264 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00183 E.coli/Salmonella-type porin signature 23 39 5.2E-70 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 323 339 - T 11-10-2018 IPR013793 Porin, Gram-negative type, conserved site BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 97 107 3.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 241 253 3.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 323 340 3.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 154 165 3.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 53 64 3.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_13555 3140680aea0db50d37049beae4366969 371 Pfam PF00267 Gram-negative porin 28 371 2.4E-146 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_02445 1f845f8b3459f9a41c287b6ac6b12778 199 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 5 197 21.156 T 11-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 BED32_02445 1f845f8b3459f9a41c287b6ac6b12778 199 Pfam PF01794 Ferric reductase like transmembrane component 48 161 4.5E-15 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 Pfam PF08218 Citrate lyase ligase C-terminal domain 145 331 1.0E-79 T 11-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 145 201 5.5E-9 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 SMART SM00764 145 331 1.1E-127 T 11-10-2018 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 5 339 7.9E-157 T 11-10-2018 IPR005216 Citrate lyase ligase GO:0008771 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 Gene3D G3DSA:3.40.50.620 141 353 5.9E-17 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 SUPERFAMILY SSF52374 144 333 6.95E-26 T 11-10-2018 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 114 335 8.0E-95 T 11-10-2018 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 PIRSF PIRSF005751 1 349 2.9E-136 T 11-10-2018 IPR005216 Citrate lyase ligase GO:0008771 BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 SUPERFAMILY SSF55729 36 117 1.62E-9 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_09235 30c4a76e419e61ee4415760a091cb9a4 358 Gene3D G3DSA:3.40.630.30 6 122 6.2E-8 T 11-10-2018 BED32_16600 0ff5fd212e9c0b0454ecfb1c029e7064 78 Pfam PF00462 Glutaredoxin 3 61 2.5E-14 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 BED32_16600 0ff5fd212e9c0b0454ecfb1c029e7064 78 Gene3D G3DSA:3.40.30.10 1 78 3.3E-28 T 11-10-2018 BED32_16600 0ff5fd212e9c0b0454ecfb1c029e7064 78 SUPERFAMILY SSF52833 1 71 9.54E-19 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_16600 0ff5fd212e9c0b0454ecfb1c029e7064 78 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 73 5.3E-34 T 11-10-2018 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 SUPERFAMILY SSF53474 191 434 1.89E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 Gene3D G3DSA:3.40.50.1820 173 438 1.0E-65 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 Gene3D G3DSA:2.60.40.10 20 171 5.5E-49 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 SUPERFAMILY SSF81296 24 176 9.1E-44 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 Pfam PF00756 Putative esterase 205 433 6.0E-35 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 BED32_03750 c68db5cd92047ccb1e1b17f890060269 440 Pfam PF11806 Domain of unknown function (DUF3327) 53 182 5.8E-39 T 11-10-2018 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 BED32_21695 0a9eb8102aa5919d8df3ef6b7ba490ee 210 Pfam PF01464 Transglycosylase SLT domain 26 142 2.0E-16 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_21695 0a9eb8102aa5919d8df3ef6b7ba490ee 210 SUPERFAMILY SSF53955 19 133 1.24E-25 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_21695 0a9eb8102aa5919d8df3ef6b7ba490ee 210 Gene3D G3DSA:1.10.530.10 20 162 4.9E-15 T 11-10-2018 BED32_22160 0a9eb8102aa5919d8df3ef6b7ba490ee 210 Pfam PF01464 Transglycosylase SLT domain 26 142 2.0E-16 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 BED32_22160 0a9eb8102aa5919d8df3ef6b7ba490ee 210 SUPERFAMILY SSF53955 19 133 1.24E-25 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_22160 0a9eb8102aa5919d8df3ef6b7ba490ee 210 Gene3D G3DSA:1.10.530.10 20 162 4.9E-15 T 11-10-2018 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 SMART SM00840 341 402 2.2E-27 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 6.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 6.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 6.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 6.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 461 39.211 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 Pfam PF09190 DALR domain 341 402 2.3E-24 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 460 4.4E-192 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 Gene3D G3DSA:3.40.50.620 1 305 1.4E-133 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 SUPERFAMILY SSF47323 316 460 1.2E-42 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 SUPERFAMILY SSF52374 1 313 3.75E-102 T 11-10-2018 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 5.2E-142 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 BED32_06465 4630fefa06dd23a9c970f947d76bd364 461 Gene3D G3DSA:1.20.120.640 306 461 4.3E-56 T 11-10-2018 BED32_12430 768ddcce2c677457754b2fc789923004 162 Gene3D G3DSA:3.40.30.10 16 161 1.1E-36 T 11-10-2018 BED32_12430 768ddcce2c677457754b2fc789923004 162 Pfam PF08534 Redoxin 25 147 2.1E-19 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 BED32_12430 768ddcce2c677457754b2fc789923004 162 SUPERFAMILY SSF52833 23 160 2.87E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_02130 7d10666e2c50074b2ea43536bee7f6b1 575 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 7 572 0.0 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 BED32_02130 7d10666e2c50074b2ea43536bee7f6b1 575 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 9 566 9.1E-253 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 BED32_02130 7d10666e2c50074b2ea43536bee7f6b1 575 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 1 570 43.806 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 BED32_02130 7d10666e2c50074b2ea43536bee7f6b1 575 PIRSF PIRSF000719 1 575 4.0E-297 T 11-10-2018 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 BED32_08180 ce56954586ed55f8bb9e4ad6bdfa637e 310 Gene3D G3DSA:3.40.190.10 32 306 6.6E-99 T 11-10-2018 BED32_08180 ce56954586ed55f8bb9e4ad6bdfa637e 310 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 304 8.9E-57 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BED32_08180 ce56954586ed55f8bb9e4ad6bdfa637e 310 Gene3D G3DSA:3.40.190.120 133 246 6.6E-99 T 11-10-2018 BED32_08180 ce56954586ed55f8bb9e4ad6bdfa637e 310 SUPERFAMILY SSF53850 29 308 2.09E-61 T 11-10-2018 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 86 4.4E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 1.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 1.7E-5 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 SMART SM00345 27 86 1.3E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 Pfam PF00155 Aminotransferase class I and II 163 457 3.8E-20 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 Gene3D G3DSA:1.10.10.10 13 97 6.5E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 SUPERFAMILY SSF46785 21 89 5.62E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 SUPERFAMILY SSF53383 105 489 3.89E-82 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_04145 b383345e35c1d9226cd9acd2e9daad28 496 Gene3D G3DSA:3.40.640.10 118 484 5.6E-107 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 Gene3D G3DSA:3.20.140.10 1 401 4.1E-170 T 11-10-2018 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 5 396 48.613 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 8 395 1.1E-167 T 11-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 SUPERFAMILY SSF54675 3 138 7.65E-44 T 11-10-2018 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 169 394 2.5E-80 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 PIRSF PIRSF000484 1 380 7.6E-60 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 BED32_13545 1093ff334e877f347191a8b3200b7f52 401 SUPERFAMILY SSF51690 120 392 5.89E-86 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 BED32_20810 265859a41e61fb51d0ec245df5bd4bc0 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 6.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_20810 265859a41e61fb51d0ec245df5bd4bc0 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_20380 f46c681a7f7f471798f40b5dd44ee09f 248 Gene3D G3DSA:3.40.50.10090 4 245 5.7E-69 T 11-10-2018 BED32_20380 f46c681a7f7f471798f40b5dd44ee09f 248 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 242 1.3E-44 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_20380 f46c681a7f7f471798f40b5dd44ee09f 248 Gene3D G3DSA:3.40.50.10090 32 165 5.7E-69 T 11-10-2018 BED32_20380 f46c681a7f7f471798f40b5dd44ee09f 248 SUPERFAMILY SSF69618 1 247 7.85E-57 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 BED32_04855 6ee4650286d06b64d4c82e2a27062ad6 388 TIGRFAM TIGR03669 urea_ABC_arch: urea ABC transporter, substrate-binding protein 7 381 7.2E-183 T 11-10-2018 IPR019968 Urea ABC transporter, substrate-binding protein BED32_04855 6ee4650286d06b64d4c82e2a27062ad6 388 Pfam PF13433 Periplasmic binding protein domain 7 351 3.4E-82 T 11-10-2018 BED32_04855 6ee4650286d06b64d4c82e2a27062ad6 388 SUPERFAMILY SSF53822 6 352 2.12E-93 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_04855 6ee4650286d06b64d4c82e2a27062ad6 388 Gene3D G3DSA:3.40.50.2300 122 351 8.7E-114 T 11-10-2018 BED32_04855 6ee4650286d06b64d4c82e2a27062ad6 388 Gene3D G3DSA:3.40.50.2300 9 336 8.7E-114 T 11-10-2018 BED32_09870 21adddd7f2f799f401048551ee08e0ef 245 SMART SM00481 4 78 5.7E-14 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BED32_09870 21adddd7f2f799f401048551ee08e0ef 245 SUPERFAMILY SSF89550 3 241 6.15E-62 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BED32_09870 21adddd7f2f799f401048551ee08e0ef 245 Gene3D G3DSA:3.20.20.140 1 245 3.2E-64 T 11-10-2018 BED32_09870 21adddd7f2f799f401048551ee08e0ef 245 Pfam PF02811 PHP domain 5 158 8.0E-6 T 11-10-2018 IPR004013 PHP domain GO:0003824 BED32_09870 21adddd7f2f799f401048551ee08e0ef 245 Hamap MF_01561 Probable phosphatase YcdX [ycdX]. 1 243 49.421 T 11-10-2018 IPR023710 Probable phosphatase YcdX GO:0008270 BED32_07745 1cf9e6fda426e3dafd2b613ba329bb40 115 PIRSF PIRSF000169 1 115 2.4E-41 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 BED32_07745 1cf9e6fda426e3dafd2b613ba329bb40 115 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 113 7.5E-36 T 11-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 BED32_07745 1cf9e6fda426e3dafd2b613ba329bb40 115 Gene3D G3DSA:1.20.1300.10 1 115 2.4E-30 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07745 1cf9e6fda426e3dafd2b613ba329bb40 115 SUPERFAMILY SSF81343 5 114 8.5E-29 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_21375 19221cded36e2a55129a09564bde52fe 500 Gene3D G3DSA:3.40.50.300 258 497 2.6E-47 T 11-10-2018 BED32_21375 19221cded36e2a55129a09564bde52fe 500 SUPERFAMILY SSF52540 3 231 2.66E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21375 19221cded36e2a55129a09564bde52fe 500 SMART SM00382 29 225 7.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21375 19221cded36e2a55129a09564bde52fe 500 SMART SM00382 277 473 2.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21375 19221cded36e2a55129a09564bde52fe 500 Gene3D G3DSA:3.40.50.300 1 250 2.0E-53 T 11-10-2018 BED32_21375 19221cded36e2a55129a09564bde52fe 500 SUPERFAMILY SSF52540 267 482 9.87E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21375 19221cded36e2a55129a09564bde52fe 500 Pfam PF00005 ABC transporter 269 423 9.6E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_21375 19221cded36e2a55129a09564bde52fe 500 ProSitePatterns PS00211 ABC transporters family signature. 396 410 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_21375 19221cded36e2a55129a09564bde52fe 500 Pfam PF00005 ABC transporter 22 169 9.9E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_09125 3a6f030479210afb027725dce7a73a89 465 TIGRFAM TIGR00797 matE: MATE efflux family protein 30 434 1.6E-63 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BED32_09125 3a6f030479210afb027725dce7a73a89 465 Pfam PF01554 MatE 30 190 4.5E-35 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BED32_09125 3a6f030479210afb027725dce7a73a89 465 Pfam PF01554 MatE 260 421 2.1E-19 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BED32_09125 3a6f030479210afb027725dce7a73a89 465 PIRSF PIRSF006603 11 461 7.3E-65 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 BED32_10560 2e877de35ad127c9a2d93a927acb83e6 261 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 100 120 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 BED32_10560 2e877de35ad127c9a2d93a927acb83e6 261 SUPERFAMILY SSF52096 1 260 1.9E-61 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_10560 2e877de35ad127c9a2d93a927acb83e6 261 Gene3D G3DSA:3.90.226.10 2 184 1.6E-56 T 11-10-2018 BED32_10560 2e877de35ad127c9a2d93a927acb83e6 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 259 6.7E-44 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BED32_10560 2e877de35ad127c9a2d93a927acb83e6 261 Gene3D G3DSA:1.10.12.10 203 260 5.8E-30 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 334 7.0E-42 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 SUPERFAMILY SSF52540 23 255 9.99E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Gene3D G3DSA:1.10.10.10 260 334 1.1E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 SUPERFAMILY SSF46785 260 331 3.27E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 SMART SM00382 54 181 6.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Gene3D G3DSA:1.10.8.60 185 258 2.6E-29 T 11-10-2018 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Gene3D G3DSA:3.40.50.300 23 184 1.3E-39 T 11-10-2018 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 7 238 3.3E-117 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 8.0E-149 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 185.269 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 BED32_10190 c8305c821a44fdfbf2d6a4b8b0edab67 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 1.2E-33 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 BED32_10255 fd9e221b6fb05b58da17764698681e56 125 Gene3D G3DSA:1.10.3730.20 1 109 2.0E-29 T 11-10-2018 BED32_10255 fd9e221b6fb05b58da17764698681e56 125 Pfam PF00893 Small Multidrug Resistance protein 3 93 2.8E-23 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BED32_10255 fd9e221b6fb05b58da17764698681e56 125 Hamap MF_01598 Spermidine export protein MdtJ [mdtJ]. 1 125 32.717 T 11-10-2018 IPR023740 Spermidine export protein MdtJ GO:0005886|GO:0015606|GO:0015848 BED32_10255 fd9e221b6fb05b58da17764698681e56 125 SUPERFAMILY SSF103481 6 107 1.05E-16 T 11-10-2018 BED32_20150 9948d34d7436a582d2b482548ff35ea5 428 Pfam PF02653 Branched-chain amino acid transport system / permease component 113 398 3.3E-57 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_20150 9948d34d7436a582d2b482548ff35ea5 428 Pfam PF11862 Domain of unknown function (DUF3382) 5 103 7.0E-25 T 11-10-2018 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 28 44 2.0E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 207 217 2.0E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 154 175 2.0E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 78 97 2.0E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 24 33 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 Gene3D G3DSA:1.10.240.10 198 310 6.6E-144 T 11-10-2018 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 Gene3D G3DSA:3.40.50.620 18 341 6.6E-144 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 Pfam PF00579 tRNA synthetases class I (W and Y) 13 297 5.4E-88 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 15 342 1.4E-119 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 15 343 42.943 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 BED32_01650 7444bcfcd9488bb2c2960b8cf62480b5 346 SUPERFAMILY SSF52374 17 342 8.04E-99 T 11-10-2018 BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 Gene3D G3DSA:3.40.350.10 18 181 1.2E-13 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 SUPERFAMILY SSF55920 179 408 4.71E-50 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 Pfam PF01321 Creatinase/Prolidase N-terminal domain 20 182 7.8E-26 T 11-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 Gene3D G3DSA:3.90.230.10 182 408 4.0E-47 T 11-10-2018 BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 Pfam PF00557 Metallopeptidase family M24 190 392 3.8E-35 T 11-10-2018 IPR000994 Peptidase M24 BED32_12400 3441937c0c2c0edc2d9d295e5b202012 410 SUPERFAMILY SSF53092 14 181 7.32E-13 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BED32_21275 05715e113b64dab3414bc021bfd54f0d 188 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 182 17.15 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 BED32_21275 05715e113b64dab3414bc021bfd54f0d 188 Pfam PF04220 Der GTPase activator (YihI) 20 178 8.8E-57 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 BED32_19265 1260f38bffac6abcb52a7594c79e2de6 181 Pfam PF00929 Exonuclease 9 170 4.0E-35 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_19265 1260f38bffac6abcb52a7594c79e2de6 181 Gene3D G3DSA:3.30.420.10 1 181 1.1E-71 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_19265 1260f38bffac6abcb52a7594c79e2de6 181 SUPERFAMILY SSF53098 4 179 3.93E-48 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_19265 1260f38bffac6abcb52a7594c79e2de6 181 SMART SM00479 7 180 9.4E-22 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_19265 1260f38bffac6abcb52a7594c79e2de6 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 44.829 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 BED32_16575 bbb9e3efdecd27831c44111d62c60682 238 SUPERFAMILY SSF53474 2 201 1.25E-10 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_16575 bbb9e3efdecd27831c44111d62c60682 238 Pfam PF03403 Platelet-activating factor acetylhydrolase, isoform II 42 158 1.8E-5 T 11-10-2018 IPR005065 Platelet-activating factor acetylhydrolase-like GO:0003847|GO:0016042 KEGG: 00565+3.1.1.47 BED32_14550 3bdeb20f55c7326d225cc8026925b8ba 485 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 9 475 5.4E-135 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BED32_14550 3bdeb20f55c7326d225cc8026925b8ba 485 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 475 17.74 T 11-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 BED32_14550 3bdeb20f55c7326d225cc8026925b8ba 485 Pfam PF00361 Proton-conducting membrane transporter 122 420 8.6E-84 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_12270 44c48638cd28d98293d4913272ed409f 349 SUPERFAMILY SSF103481 55 148 3.27E-11 T 11-10-2018 BED32_12270 44c48638cd28d98293d4913272ed409f 349 Pfam PF00892 EamA-like transporter family 10 144 2.5E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_12270 44c48638cd28d98293d4913272ed409f 349 Pfam PF00892 EamA-like transporter family 155 284 9.0E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_12270 44c48638cd28d98293d4913272ed409f 349 SUPERFAMILY SSF103481 193 289 1.57E-6 T 11-10-2018 BED32_07895 2ff98ab500ecddef6f95f2db8745e62c 590 Gene3D G3DSA:3.40.50.200 1 247 1.6E-50 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BED32_07895 2ff98ab500ecddef6f95f2db8745e62c 590 Pfam PF00082 Subtilase family 5 208 1.8E-24 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BED32_07895 2ff98ab500ecddef6f95f2db8745e62c 590 SUPERFAMILY SSF52743 7 211 2.62E-42 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BED32_07895 2ff98ab500ecddef6f95f2db8745e62c 590 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 8 18 - T 11-10-2018 IPR022398 Peptidase S8, subtilisin, His-active site BED32_07895 2ff98ab500ecddef6f95f2db8745e62c 590 TIGRFAM TIGR03895 protease_PatA: cyanobactin maturation protease, PatA/PatG family 8 589 4.7E-138 T 11-10-2018 IPR023830 Peptidase S8A, PatG BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 269 4.1E-28 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 Gene3D G3DSA:3.40.50.720 2 165 1.2E-49 T 11-10-2018 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 PIRSF PIRSF000193 3 271 1.7E-73 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 247 - T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 SUPERFAMILY SSF48179 163 271 2.21E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 100 3.2E-18 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 Gene3D G3DSA:1.10.3730.10 166 273 8.4E-33 T 11-10-2018 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 SUPERFAMILY SSF51735 4 162 1.29E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 269 2.3E-69 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BED32_04345 8e71b46b139a1357ef0b1ed6a542c20a 273 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 269 24.572 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 BED32_12740 b7fa430991e773110d45e9e58e230210 286 Gene3D G3DSA:3.40.50.150 1 272 5.0E-78 T 11-10-2018 BED32_12740 b7fa430991e773110d45e9e58e230210 286 SUPERFAMILY SSF53335 4 259 1.67E-42 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_12740 b7fa430991e773110d45e9e58e230210 286 PIRSF PIRSF018249 1 271 2.7E-81 T 11-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 BED32_12740 b7fa430991e773110d45e9e58e230210 286 Pfam PF13847 Methyltransferase domain 86 199 1.2E-10 T 11-10-2018 IPR025714 Methyltransferase domain BED32_01180 47dcdee9c40cfab8456ff290248e96cd 711 Gene3D G3DSA:3.30.420.10 284 483 1.5E-15 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_01180 47dcdee9c40cfab8456ff290248e96cd 711 Pfam PF00665 Integrase core domain 290 427 7.6E-9 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_01180 47dcdee9c40cfab8456ff290248e96cd 711 SUPERFAMILY SSF53098 310 437 1.23E-5 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_20115 1fa7b0607501969aae5b2b24677754ae 725 Pfam PF16967 E-set like domain 217 285 1.3E-21 T 11-10-2018 IPR032636 Pilus assembly protein, E-set like domain BED32_16035 79f46d17e25897591bb835620913c708 431 Pfam PF12404 Peptidase 6 82 6.9E-35 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 BED32_16035 79f46d17e25897591bb835620913c708 431 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 110 422 1.3E-106 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 SUPERFAMILY SSF53187 108 427 2.64E-104 T 11-10-2018 BED32_16035 79f46d17e25897591bb835620913c708 431 Gene3D G3DSA:3.40.630.10 96 430 3.4E-108 T 11-10-2018 BED32_16035 79f46d17e25897591bb835620913c708 431 PRINTS PR00481 Cytosol aminopeptidase signature 191 208 1.5E-47 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 PRINTS PR00481 Cytosol aminopeptidase signature 213 234 1.5E-47 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 PRINTS PR00481 Cytosol aminopeptidase signature 300 315 1.5E-47 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 PRINTS PR00481 Cytosol aminopeptidase signature 250 271 1.5E-47 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 PRINTS PR00481 Cytosol aminopeptidase signature 272 292 1.5E-47 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 Hamap MF_00504 Peptidase B [pepB]. 4 428 68.544 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 BED32_16035 79f46d17e25897591bb835620913c708 431 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 276 283 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 BED32_16035 79f46d17e25897591bb835620913c708 431 PIRSF PIRSF036388 2 431 5.3E-237 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 BED32_15085 03d0dffd4300023f50aa96d866037b03 103 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 95 2.2E-35 T 11-10-2018 IPR024476 Protein of unknown function DUF3861 BED32_15085 03d0dffd4300023f50aa96d866037b03 103 Gene3D G3DSA:1.10.225.20 1 96 1.1E-30 T 11-10-2018 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 Pfam PF07719 Tetratricopeptide repeat 96 129 5.3E-5 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 Pfam PF13181 Tetratricopeptide repeat 62 94 0.033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 SMART SM00028 96 129 2.0E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 SMART SM00028 62 95 0.0033 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 Gene3D G3DSA:1.25.40.10 20 294 5.1E-118 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 SUPERFAMILY SSF48452 27 283 7.85E-76 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_18900 e32289c3fdf02421ff85b378258b0c35 294 PIRSF PIRSF004654 1 292 6.4E-117 T 11-10-2018 IPR023605 Lipoprotein NlpI BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 Pfam PF00005 ABC transporter 20 161 1.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 Pfam PF08402 TOBE domain 287 358 1.3E-8 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 SMART SM00382 28 211 1.0E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 SUPERFAMILY SSF50331 236 366 1.7E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 SUPERFAMILY SSF52540 4 241 3.5E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 Gene3D G3DSA:2.40.50.940 222 359 3.9E-26 T 11-10-2018 BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 Gene3D G3DSA:3.40.50.300 4 221 2.4E-65 T 11-10-2018 BED32_18805 0354cab228aa88da1ee40e7fb84658d1 371 Gene3D G3DSA:2.40.50.140 293 350 3.9E-26 T 11-10-2018 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 11-10-2018 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site BED32_14290 8604e496f33844822ee1c25db3095e9e 478 Pfam PF00232 Glycosyl hydrolase family 1 3 475 8.1E-128 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 SUPERFAMILY SSF51445 2 471 2.08E-158 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily BED32_14290 8604e496f33844822ee1c25db3095e9e 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 372 380 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site BED32_14290 8604e496f33844822ee1c25db3095e9e 478 Gene3D G3DSA:3.20.20.80 1 478 1.7E-162 T 11-10-2018 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 432 1.5E-16 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.5E-16 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 1.5E-16 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 372 380 1.5E-16 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_14290 8604e496f33844822ee1c25db3095e9e 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 1.5E-16 T 11-10-2018 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 BED32_20430 d96c7f02d0b34e7d80d47ef9b0b085eb 458 Hamap MF_01003 Probable ECA polymerase [wzyE]. 1 447 38.384 T 11-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 BED32_20430 d96c7f02d0b34e7d80d47ef9b0b085eb 458 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 1 441 2.2E-261 T 11-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Gene3D G3DSA:3.90.100.10 601 721 4.7E-42 T 11-10-2018 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Gene3D G3DSA:3.40.50.220 1 108 7.1E-23 T 11-10-2018 IPR027464 Ornithine decarboxylase, N-terminal KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 TIGRFAM TIGR04301 ODC_inducible: ornithine decarboxylase SpeF 1 719 0.0 T 11-10-2018 IPR027568 Ornithine decarboxylase SpeF GO:0004586 KEGG: 00330+4.1.1.17|KEGG: 00480+4.1.1.17|MetaCyc: PWY-46|MetaCyc: PWY-6305 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 PIRSF PIRSF009393 1 720 5.3E-292 T 11-10-2018 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 SUPERFAMILY SSF52172 1 108 2.83E-34 T 11-10-2018 IPR011006 CheY-like superfamily BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 576 704 2.3E-45 T 11-10-2018 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Gene3D G3DSA:3.90.1150.10 421 600 2.3E-68 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Gene3D G3DSA:3.40.640.10 109 420 6.9E-86 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 350 364 - T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 SUPERFAMILY SSF55904 572 719 1.57E-45 T 11-10-2018 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 SUPERFAMILY SSF53383 109 566 4.34E-120 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 109 549 2.3E-196 T 11-10-2018 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 BED32_18835 4c4ff9009d124a38e53ec364dd6d93de 721 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 5 103 4.3E-25 T 11-10-2018 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 TIGRFAM TIGR00861 MIP: MIP family channel proteins 11 249 1.5E-67 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 Gene3D G3DSA:1.20.1080.10 1 257 8.7E-99 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 SUPERFAMILY SSF81338 6 255 6.15E-76 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 46 70 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 7 26 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 232 252 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 182 204 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 149 167 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 PRINTS PR00783 Major intrinsic protein family signature 83 102 1.7E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 Pfam PF00230 Major intrinsic protein 6 249 1.8E-65 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 BED32_08940 68fc8d13a6c7f23beecf7b67f6ba21fd 271 ProSitePatterns PS00221 MIP family signature. 64 72 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 BED32_09305 36dc91625e8760e5ed1d0c580c6b7b5d 143 SUPERFAMILY SSF55804 4 141 1.57E-27 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_09305 36dc91625e8760e5ed1d0c580c6b7b5d 143 Gene3D G3DSA:3.40.930.10 1 143 1.7E-29 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_09305 36dc91625e8760e5ed1d0c580c6b7b5d 143 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 142 2.4E-22 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_18355 8be6fe46a6abc17c40aee6a2d778d324 421 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 2 418 6.6E-151 T 11-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 BED32_18355 8be6fe46a6abc17c40aee6a2d778d324 421 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 4 77 5.0E-21 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BED32_18355 8be6fe46a6abc17c40aee6a2d778d324 421 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 197 418 4.2E-75 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BED32_18355 8be6fe46a6abc17c40aee6a2d778d324 421 Pfam PF07670 Nucleoside recognition 95 191 7.7E-9 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 PIRSF PIRSF000156 1 887 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 Gene3D G3DSA:3.40.50.970 57 471 7.0E-136 T 11-10-2018 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 SUPERFAMILY SSF52922 702 885 3.14E-62 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 Gene3D G3DSA:3.40.50.920 707 887 2.2E-73 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 Gene3D G3DSA:3.40.50.970 472 706 8.6E-111 T 11-10-2018 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 111 294 4.2E-8 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 362 427 1.0E-4 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 886 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 BED32_17765 6292ef882d389b732996716c4b54ddfa 887 SUPERFAMILY SSF52518 474 701 1.88E-98 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_17765 6292ef882d389b732996716c4b54ddfa 887 SUPERFAMILY SSF52518 59 469 1.2E-142 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_05990 291754e65aa307a1cda792e0b274b9ed 306 SUPERFAMILY SSF48576 9 285 2.16E-89 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily BED32_05990 291754e65aa307a1cda792e0b274b9ed 306 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 222 234 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site BED32_05990 291754e65aa307a1cda792e0b274b9ed 306 Pfam PF00348 Polyprenyl synthetase 39 270 1.0E-58 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 BED32_05990 291754e65aa307a1cda792e0b274b9ed 306 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 88 104 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site BED32_05990 291754e65aa307a1cda792e0b274b9ed 306 Gene3D G3DSA:1.10.600.10 8 306 7.8E-109 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily BED32_22050 1ddf402ef8182bb886767cb1a763a090 182 Pfam PF07180 CaiF/GrlA transcriptional regulator 43 155 3.8E-8 T 11-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 BED32_22050 1ddf402ef8182bb886767cb1a763a090 182 Gene3D G3DSA:1.10.10.10 43 136 7.3E-17 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 TIGRFAM TIGR00444 mazG: MazG family protein 19 272 2.4E-106 T 11-10-2018 IPR011551 NTP pyrophosphohydrolase MazG BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 Gene3D G3DSA:1.10.287.1080 144 277 9.9E-47 T 11-10-2018 BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 SUPERFAMILY SSF101386 12 112 4.11E-25 T 11-10-2018 BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 Gene3D G3DSA:1.10.287.1080 10 140 7.7E-45 T 11-10-2018 BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 SUPERFAMILY SSF101386 151 251 4.86E-23 T 11-10-2018 BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 36 109 1.1E-27 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BED32_17540 20c2b63f4d7eeb881b37a848b7527739 278 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 183 244 1.8E-6 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core BED32_20355 75d8a45a16e823337c5c1475e6c2253f 67 Pfam PF13627 Prokaryotic lipoprotein-attachment site 12 29 2.1E-8 T 11-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site BED32_20185 2acafcc2ee4a5318932712220dcb9a8c 319 PIRSF PIRSF003097 18 315 2.7E-96 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 BED32_20185 2acafcc2ee4a5318932712220dcb9a8c 319 Pfam PF02687 FtsX-like permease family 220 309 1.9E-6 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_20185 2acafcc2ee4a5318932712220dcb9a8c 319 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 21 318 5.2E-131 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 BED32_07395 4c5273fdcf735a3932b35d0f0c63a0b0 87 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 1 87 26.829 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 BED32_07395 4c5273fdcf735a3932b35d0f0c63a0b0 87 Pfam PF04359 Protein of unknown function (DUF493) 7 87 3.8E-30 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 BED32_07395 4c5273fdcf735a3932b35d0f0c63a0b0 87 Gene3D G3DSA:3.30.70.260 1 87 3.2E-35 T 11-10-2018 BED32_07395 4c5273fdcf735a3932b35d0f0c63a0b0 87 SUPERFAMILY SSF117991 1 87 3.27E-32 T 11-10-2018 IPR027471 YbeD-like domain superfamily BED32_17530 17caeb7d7ff070539c3143071347e959 431 Gene3D G3DSA:3.20.20.120 128 431 9.7E-137 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_17530 17caeb7d7ff070539c3143071347e959 431 SUPERFAMILY SSF54826 3 138 3.16E-56 T 11-10-2018 BED32_17530 17caeb7d7ff070539c3143071347e959 431 Pfam PF03952 Enolase, N-terminal domain 4 134 2.6E-58 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 SMART SM01193 4 134 5.3E-93 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 429 1.2E-139 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 428 1.1E-205 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 ProSitePatterns PS00164 Enolase signature. 339 352 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PIRSF PIRSF001400 1 429 1.7E-191 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 Gene3D G3DSA:3.30.390.10 3 127 1.0E-54 T 11-10-2018 IPR029017 Enolase-like, N-terminal BED32_17530 17caeb7d7ff070539c3143071347e959 431 SMART SM01192 143 430 1.8E-212 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 Hamap MF_00318 Enolase [eno]. 2 416 44.217 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 368 385 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 316 327 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 PRINTS PR00148 Enolase signature 339 353 1.2E-44 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 BED32_17530 17caeb7d7ff070539c3143071347e959 431 SUPERFAMILY SSF51604 143 427 3.54E-127 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_12385 a3de7726f6de5c43911d922cd2de8f19 444 Pfam PF00535 Glycosyl transferase family 2 78 245 1.3E-35 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_12385 a3de7726f6de5c43911d922cd2de8f19 444 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 30 438 9.4E-192 T 11-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 BED32_12385 a3de7726f6de5c43911d922cd2de8f19 444 SUPERFAMILY SSF53448 66 345 2.81E-63 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_12385 a3de7726f6de5c43911d922cd2de8f19 444 Gene3D G3DSA:3.90.550.10 68 285 1.0E-43 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 Pfam PF00005 ABC transporter 29 189 8.0E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 PIRSF PIRSF039085 10 265 3.7E-119 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 Gene3D G3DSA:3.40.50.300 9 264 6.2E-84 T 11-10-2018 BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 SMART SM00382 38 237 1.4E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 SUPERFAMILY SSF52540 14 259 1.02E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14715 eee8ffb691ba73a059186c3fca7faf6d 265 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_05175 369643c1315d1ba6f3860a6e5d21366e 465 Pfam PF01425 Amidase 28 445 2.2E-97 T 11-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BED32_05175 369643c1315d1ba6f3860a6e5d21366e 465 Gene3D G3DSA:3.90.1300.10 3 459 6.8E-128 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BED32_05175 369643c1315d1ba6f3860a6e5d21366e 465 TIGRFAM TIGR02715 amido_AtzE: amidohydrolase, AtzE family 9 459 7.4E-227 T 11-10-2018 IPR014087 Amidohydrolase, AtzE type KEGG: 00791+3.5.1.84|MetaCyc: PWY-5169 BED32_05175 369643c1315d1ba6f3860a6e5d21366e 465 SUPERFAMILY SSF75304 2 454 2.49E-129 T 11-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 BED32_06930 c7493d7d4f9d5c72215b01d074fe831e 76 Pfam PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT 7 64 1.7E-19 T 11-10-2018 IPR031856 Putative bacterial antitoxin YdaS BED32_06930 c7493d7d4f9d5c72215b01d074fe831e 76 Gene3D G3DSA:1.10.260.40 4 73 1.0E-16 T 11-10-2018 BED32_06930 c7493d7d4f9d5c72215b01d074fe831e 76 SUPERFAMILY SSF47413 6 64 7.1E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_20245 101a7757644a205b2724df9e1784f8d9 421 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 71 82 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_20245 101a7757644a205b2724df9e1784f8d9 421 Gene3D G3DSA:1.10.1060.10 2 106 5.2E-10 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_20245 101a7757644a205b2724df9e1784f8d9 421 SUPERFAMILY SSF46548 20 96 5.23E-16 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_20245 101a7757644a205b2724df9e1784f8d9 421 Pfam PF13183 4Fe-4S dicluster domain 21 85 9.0E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_20245 101a7757644a205b2724df9e1784f8d9 421 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 18 417 1.8E-231 T 11-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 BED32_20245 101a7757644a205b2724df9e1784f8d9 421 Pfam PF02754 Cysteine-rich domain 314 397 1.3E-13 T 11-10-2018 IPR004017 Cysteine-rich domain BED32_20245 101a7757644a205b2724df9e1784f8d9 421 Pfam PF02754 Cysteine-rich domain 178 264 9.1E-14 T 11-10-2018 IPR004017 Cysteine-rich domain BED32_03475 f559fb0782a4de2e01fbbcc6f9212822 260 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 258 5.4E-31 T 11-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 BED32_03475 f559fb0782a4de2e01fbbcc6f9212822 260 Gene3D G3DSA:3.40.830.10 1 260 6.4E-93 T 11-10-2018 BED32_03475 f559fb0782a4de2e01fbbcc6f9212822 260 PIRSF PIRSF006157 1 260 9.5E-93 T 11-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 BED32_03475 f559fb0782a4de2e01fbbcc6f9212822 260 SUPERFAMILY SSF53213 5 259 1.57E-91 T 11-10-2018 BED32_08995 463788bc8d01d65d4697181acb0e63cf 275 TIGRFAM TIGR00715 precor6x_red: precorrin-6x reductase 9 256 5.7E-50 T 11-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 BED32_08995 463788bc8d01d65d4697181acb0e63cf 275 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 8 256 2.5E-72 T 11-10-2018 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 11-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 Gene3D G3DSA:3.30.60.20 144 190 3.9E-10 T 11-10-2018 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 PIRSF PIRSF035805 1 197 7.6E-58 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 SUPERFAMILY SSF52540 1 141 2.79E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 Gene3D G3DSA:3.40.50.300 1 141 1.2E-26 T 11-10-2018 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 35.97 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 Pfam PF00265 Thymidine kinase 2 186 7.8E-62 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 BED32_12125 7a13599cc8dd18d2b3effefd2682e0ad 199 SUPERFAMILY SSF57716 142 191 1.24E-17 T 11-10-2018 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 11-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 162 26.765 T 11-10-2018 IPR022973 Ribosomal protein L10 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 Pfam PF00466 Ribosomal protein L10 6 101 7.6E-27 T 11-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 SUPERFAMILY SSF160369 4 162 5.89E-49 T 11-10-2018 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 Gene3D G3DSA:3.30.70.1730 1 126 1.2E-35 T 11-10-2018 BED32_19845 c5f6274d8b3797f7050f8f13ec8e77f0 167 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 78 157 4.0E-4 T 11-10-2018 BED32_02630 6c5a1454afb1298ccb81165119aa45df 345 SUPERFAMILY SSF52402 25 242 7.94E-25 T 11-10-2018 BED32_02630 6c5a1454afb1298ccb81165119aa45df 345 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 24 247 1.0E-47 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 SUPERFAMILY SSF53720 24 495 7.85E-169 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 44 490 8.6E-205 T 11-10-2018 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 Gene3D G3DSA:3.40.309.10 272 461 6.3E-181 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 Pfam PF00171 Aldehyde dehydrogenase family 35 491 3.5E-171 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 268 275 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 BED32_02575 8c3edf7ab11191cd8c97f840d146ce82 497 Gene3D G3DSA:3.40.605.10 39 486 6.3E-181 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_18590 fe3978afc70807b70236da2e431758d2 96 Gene3D G3DSA:3.30.70.100 1 96 6.2E-37 T 11-10-2018 BED32_18590 fe3978afc70807b70236da2e431758d2 96 Hamap MF_02051 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase [lsrG]. 1 96 36.822 T 11-10-2018 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase GO:0016853 BED32_18590 fe3978afc70807b70236da2e431758d2 96 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 4.5E-18 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BED32_18590 fe3978afc70807b70236da2e431758d2 96 SUPERFAMILY SSF54909 1 91 1.42E-24 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_09470 515df38b0df969cb70ecdbf8d023ba01 63 Hamap MF_01549 Protein DsrB [dsrB]. 1 62 27.223 T 11-10-2018 IPR019717 Dextransucrase DSRB BED32_09470 515df38b0df969cb70ecdbf8d023ba01 63 Pfam PF10781 Dextransucrase DSRB 1 60 7.1E-38 T 11-10-2018 IPR019717 Dextransucrase DSRB BED32_21215 19294269b0977db68f4a774511c4570d 228 Pfam PF08448 PAS fold 16 125 2.2E-10 T 11-10-2018 IPR013656 PAS fold-4 BED32_21215 19294269b0977db68f4a774511c4570d 228 Gene3D G3DSA:1.10.10.10 145 211 2.6E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21215 19294269b0977db68f4a774511c4570d 228 SUPERFAMILY SSF46894 138 210 6.46E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_21215 19294269b0977db68f4a774511c4570d 228 Gene3D G3DSA:3.30.450.20 1 128 4.8E-6 T 11-10-2018 BED32_21215 19294269b0977db68f4a774511c4570d 228 SMART SM00421 148 205 2.7E-4 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_21215 19294269b0977db68f4a774511c4570d 228 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 204 8.3E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_04670 3a27a7ae68411564351e7cfe7be2926e 167 Gene3D G3DSA:2.60.40.1090 32 166 6.5E-27 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_04670 3a27a7ae68411564351e7cfe7be2926e 167 SUPERFAMILY SSF49401 21 166 2.78E-32 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_05325 ade8688ccc364afb05a225c4b2167c5b 67 Pfam PF10965 Protein of unknown function (DUF2767) 3 65 2.2E-21 T 11-10-2018 IPR024493 Fumarase D KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BED32_05325 ade8688ccc364afb05a225c4b2167c5b 67 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 5 65 1.0E-7 T 11-10-2018 BED32_06910 ade8688ccc364afb05a225c4b2167c5b 67 Pfam PF10965 Protein of unknown function (DUF2767) 3 65 2.2E-21 T 11-10-2018 IPR024493 Fumarase D KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BED32_06910 ade8688ccc364afb05a225c4b2167c5b 67 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 5 65 1.0E-7 T 11-10-2018 BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 SUPERFAMILY SSF52540 256 490 1.3E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 Gene3D G3DSA:3.40.50.300 250 494 4.4E-49 T 11-10-2018 BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 Pfam PF00005 ABC transporter 282 435 8.9E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 Pfam PF00005 ABC transporter 36 169 6.4E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 SUPERFAMILY SSF52540 37 231 2.79E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 Gene3D G3DSA:3.40.50.300 33 233 2.3E-35 T 11-10-2018 BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 SMART SM00382 34 225 4.6E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_07930 abdc0d52048d321df9fb6630ac5ef508 497 SMART SM00382 291 486 2.1E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13340 6fb6c6538ca2e398ba0f39c2dd6468e1 326 Pfam PF00892 EamA-like transporter family 32 173 1.2E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_13340 6fb6c6538ca2e398ba0f39c2dd6468e1 326 Pfam PF00892 EamA-like transporter family 185 319 3.1E-16 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_13340 6fb6c6538ca2e398ba0f39c2dd6468e1 326 SUPERFAMILY SSF103481 219 321 1.19E-11 T 11-10-2018 BED32_13340 6fb6c6538ca2e398ba0f39c2dd6468e1 326 SUPERFAMILY SSF103481 71 176 8.5E-15 T 11-10-2018 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 348 360 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 Pfam PF00557 Metallopeptidase family M24 182 412 6.3E-66 T 11-10-2018 IPR000994 Peptidase M24 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 SMART SM01011 1 136 9.3E-59 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 SUPERFAMILY SSF53092 1 174 9.16E-54 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 371 383 3.2E-5 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 PRINTS PR00599 Methionine aminopeptidase-1 signature 253 269 3.2E-5 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 Pfam PF05195 Aminopeptidase P, N-terminal domain 6 126 4.8E-36 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 Gene3D G3DSA:3.40.350.10 1 171 7.0E-66 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 Gene3D G3DSA:3.90.230.10 172 437 1.8E-104 T 11-10-2018 BED32_17505 3d8e1e1a43b7c8a1e49900f6e4cc0902 437 SUPERFAMILY SSF55920 175 434 9.32E-88 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like BED32_19070 5e97090ccd7fa7f1a78aa2fa23cfeceb 120 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 109 1.9E-22 T 11-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like BED32_19070 5e97090ccd7fa7f1a78aa2fa23cfeceb 120 Gene3D G3DSA:3.10.490.10 1 119 4.6E-41 T 11-10-2018 BED32_19070 5e97090ccd7fa7f1a78aa2fa23cfeceb 120 SUPERFAMILY SSF110857 1 115 1.44E-33 T 11-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily BED32_16585 c8556190e34156593930a88540e6870a 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 11 102 7.9E-28 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 Gene3D G3DSA:3.40.50.2300 1 125 1.6E-34 T 11-10-2018 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 SUPERFAMILY SSF52172 4 181 1.57E-38 T 11-10-2018 IPR011006 CheY-like superfamily BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 Pfam PF00072 Response regulator receiver domain 8 117 5.6E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 SMART SM00862 151 227 1.3E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 SMART SM00448 6 116 4.8E-38 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 3.8E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_07635 318d50ff777b500a10f23f6b79a5034e 229 Gene3D G3DSA:1.10.10.10 126 229 2.2E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14180 c667452a6768e3c6730fa0e22696b540 602 Gene3D G3DSA:3.40.190.10 29 588 1.2E-223 T 11-10-2018 BED32_14180 c667452a6768e3c6730fa0e22696b540 602 Gene3D G3DSA:3.10.105.10 310 568 1.2E-223 T 11-10-2018 BED32_14180 c667452a6768e3c6730fa0e22696b540 602 SUPERFAMILY SSF53850 50 591 1.54E-112 T 11-10-2018 BED32_14180 c667452a6768e3c6730fa0e22696b540 602 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 99 503 7.1E-73 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_14180 c667452a6768e3c6730fa0e22696b540 602 PIRSF PIRSF002741 6 593 5.1E-146 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 PIRSF PIRSF004440 1 351 2.9E-70 T 11-10-2018 IPR026276 Baseplate protein GpP BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 Gene3D G3DSA:3.55.50.10 91 175 9.4E-96 T 11-10-2018 BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 Gene3D G3DSA:3.30.1920.10 199 277 9.4E-96 T 11-10-2018 IPR023399 Baseplate-like, two-layer sandwich fold BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 Pfam PF05954 Phage late control gene D protein (GPD) 30 179 2.6E-6 T 11-10-2018 BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 SUPERFAMILY SSF69279 1 175 4.31E-50 T 11-10-2018 BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 Gene3D G3DSA:2.30.300.10 7 337 9.4E-96 T 11-10-2018 BED32_06785 7a420a3d3a76e20f4d8624ee45ace1b7 357 SUPERFAMILY SSF69279 177 346 1.93E-45 T 11-10-2018 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 29 664 1.3E-243 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Pfam PF00270 DEAD/DEAH box helicase 272 431 2.6E-19 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Gene3D G3DSA:3.40.50.300 457 630 3.1E-50 T 11-10-2018 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Gene3D G3DSA:3.40.50.300 208 450 6.4E-82 T 11-10-2018 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 SMART SM00490 505 589 2.0E-21 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 SMART SM00487 265 459 1.7E-30 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 SUPERFAMILY SSF52540 292 653 2.34E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 SUPERFAMILY SSF50249 9 174 3.34E-42 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Pfam PF00271 Helicase conserved C-terminal domain 480 588 2.3E-16 T 11-10-2018 IPR001650 Helicase, C-terminal BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Gene3D G3DSA:2.40.50.140 47 141 7.2E-14 T 11-10-2018 BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 SUPERFAMILY SSF52540 208 453 2.15E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21190 d673ad976bd1ec397a9ed62e74abc0e4 693 Pfam PF17191 RecG wedge domain 15 172 1.9E-21 T 11-10-2018 IPR033454 RecG, wedge domain BED32_17300 52bc03f26623e2e00bb9c991ea392ada 86 Gene3D G3DSA:3.30.2310.20 2 86 1.6E-16 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_17300 52bc03f26623e2e00bb9c991ea392ada 86 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 72 9.3E-8 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BED32_17300 52bc03f26623e2e00bb9c991ea392ada 86 SUPERFAMILY SSF143011 1 81 1.96E-16 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 SUPERFAMILY SSF56176 344 429 8.18E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 Pfam PF00571 CBS domain 287 333 0.003 T 11-10-2018 IPR000644 CBS domain BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 Gene3D G3DSA:3.10.580.10 193 346 5.1E-33 T 11-10-2018 BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 Pfam PF03471 Transporter associated domain 348 425 5.8E-20 T 11-10-2018 IPR005170 Transporter-associated domain BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 Gene3D G3DSA:3.30.465.10 347 428 3.6E-29 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 Pfam PF01595 Domain of unknown function DUF21 6 197 1.1E-37 T 11-10-2018 IPR002550 CNNM, transmembrane domain BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 SMART SM01091 346 426 1.6E-26 T 11-10-2018 IPR005170 Transporter-associated domain BED32_19090 d4c6cf1de28e3f3f92ce35d28cd81d3c 443 SUPERFAMILY SSF54631 200 335 1.05E-20 T 11-10-2018 BED32_08105 9947647bc6061a187cf4519215d863b3 367 Pfam PF05076 Suppressor of fused protein (SUFU) 201 363 1.6E-19 T 11-10-2018 IPR020941 Suppressor of fused-like domain Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5610787|Reactome: R-HSA-5632684 BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 SUPERFAMILY SSF103642 134 153 1.01E-7 T 11-10-2018 BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 SUPERFAMILY SSF54427 26 130 1.05E-35 T 11-10-2018 IPR032710 NTF2-like domain superfamily BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 Pfam PF02810 SEC-C motif 3 19 3.8E-6 T 11-10-2018 IPR004027 SEC-C motif BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 Pfam PF02810 SEC-C motif 136 154 1.4E-10 T 11-10-2018 IPR004027 SEC-C motif BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 1 130 28.513 T 11-10-2018 IPR023006 Uncharacterised protein family UPF0225 BED32_12160 081d5d86e15296f0c91fd25fceab2778 154 Gene3D G3DSA:3.10.450.50 1 154 6.7E-56 T 11-10-2018 BED32_08575 46286315e7cd19a89e7ac0d629f6a1a7 358 SUPERFAMILY SSF53822 40 305 4.17E-40 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08575 46286315e7cd19a89e7ac0d629f6a1a7 358 Gene3D G3DSA:3.40.50.2300 43 309 2.9E-68 T 11-10-2018 BED32_08575 46286315e7cd19a89e7ac0d629f6a1a7 358 Gene3D G3DSA:3.40.50.2300 144 312 2.9E-68 T 11-10-2018 BED32_08575 46286315e7cd19a89e7ac0d629f6a1a7 358 Pfam PF13407 Periplasmic binding protein domain 55 302 1.5E-26 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_02230 96782f0e7d542595f6b1f6c074df2734 122 Gene3D G3DSA:1.10.3830.10 2 122 2.0E-42 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BED32_02230 96782f0e7d542595f6b1f6c074df2734 122 Pfam PF01219 Prokaryotic diacylglycerol kinase 16 117 4.8E-35 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BED32_02230 96782f0e7d542595f6b1f6c074df2734 122 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 70 81 - T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 SUPERFAMILY SSF47345 3 84 9.42E-30 T 11-10-2018 IPR035900 Colicin E immunity protein superfamily BED32_00845 2baddf50a8b34da8e386115ade607e32 84 Pfam PF01320 Colicin immunity protein / pyocin immunity protein 3 83 3.1E-34 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 ProDom PD007225 IMMUNITY COLICIN BACTERIOCIN PLASMID PROTEIN/PYOCIN ORFU3 ORFU1 PYOCIN 3D-STRUCTURE GENES 8 83 1.0E-22 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 39 55 5.9E-23 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 3 21 5.9E-23 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 PRINTS PR01299 Colicin E2 (pyocin) immunity protein signature 62 83 5.9E-23 T 11-10-2018 IPR000290 Colicin immunity protein/pyocin immunity protein GO:0015643|GO:0030153 BED32_00845 2baddf50a8b34da8e386115ade607e32 84 Gene3D G3DSA:1.10.1200.20 3 84 6.6E-32 T 11-10-2018 IPR035900 Colicin E immunity protein superfamily BED32_03495 991eddc97020e8f29ad2801c437e8db0 493 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 440 3.8E-134 T 11-10-2018 IPR010130 Type I secretion outer membrane protein, TolC GO:0015562|GO:0019867|GO:0055085 BED32_03495 991eddc97020e8f29ad2801c437e8db0 493 Gene3D G3DSA:1.20.1600.10 23 447 4.4E-149 T 11-10-2018 BED32_03495 991eddc97020e8f29ad2801c437e8db0 493 Pfam PF02321 Outer membrane efflux protein 25 210 8.8E-29 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_03495 991eddc97020e8f29ad2801c437e8db0 493 Pfam PF02321 Outer membrane efflux protein 234 424 2.0E-35 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_03495 991eddc97020e8f29ad2801c437e8db0 493 SUPERFAMILY SSF56954 25 442 1.83E-95 T 11-10-2018 BED32_09170 6be678630e1b96aaaf3ce94d12a75745 152 Pfam PF00583 Acetyltransferase (GNAT) family 38 136 3.1E-15 T 11-10-2018 IPR000182 GNAT domain BED32_09170 6be678630e1b96aaaf3ce94d12a75745 152 Gene3D G3DSA:3.40.630.30 5 148 5.6E-35 T 11-10-2018 BED32_09170 6be678630e1b96aaaf3ce94d12a75745 152 SUPERFAMILY SSF55729 8 137 3.16E-30 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_10840 0869f91afc82594772feab3d7d775fba 78 PIRSF PIRSF002855 1 78 1.0E-28 T 11-10-2018 IPR016367 Murein-lipoprotein BED32_10840 0869f91afc82594772feab3d7d775fba 78 Gene3D G3DSA:1.20.5.190 22 77 2.9E-32 T 11-10-2018 BED32_10840 0869f91afc82594772feab3d7d775fba 78 SUPERFAMILY SSF58042 24 73 7.72E-23 T 11-10-2018 BED32_10840 0869f91afc82594772feab3d7d775fba 78 Pfam PF04728 Lipoprotein leucine-zipper 26 78 5.4E-25 T 11-10-2018 IPR006817 Lipoprotein leucine-zipper GO:0019867 BED32_19790 252565fb25d649e2d793376a40882db4 167 Gene3D G3DSA:1.20.120.1370 1 152 4.4E-55 T 11-10-2018 IPR038309 Rsd/AlgQ superfamily BED32_19790 252565fb25d649e2d793376a40882db4 167 PIRSF PIRSF016548 1 161 4.6E-53 T 11-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 BED32_19790 252565fb25d649e2d793376a40882db4 167 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 149 8.5E-58 T 11-10-2018 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 BED32_19790 252565fb25d649e2d793376a40882db4 167 Hamap MF_01181 Regulator of sigma D [rsd]. 1 153 40.756 T 11-10-2018 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd BED32_03780 e058d784b3a50e5b97c0b6021660f51d 327 Gene3D G3DSA:3.40.50.720 6 305 5.9E-115 T 11-10-2018 BED32_03780 e058d784b3a50e5b97c0b6021660f51d 327 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 206 6.1E-20 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_03780 e058d784b3a50e5b97c0b6021660f51d 327 Gene3D G3DSA:3.90.25.10 178 314 5.9E-115 T 11-10-2018 BED32_03780 e058d784b3a50e5b97c0b6021660f51d 327 SUPERFAMILY SSF51735 1 318 3.28E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_14455 6ce09cdc1412039150a859a428aea7b6 180 Pfam PF07437 YfaZ precursor 1 180 2.0E-85 T 11-10-2018 IPR009998 YfaZ BED32_14455 6ce09cdc1412039150a859a428aea7b6 180 SUPERFAMILY SSF56925 45 179 4.87E-11 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel BED32_14455 6ce09cdc1412039150a859a428aea7b6 180 Gene3D G3DSA:2.40.160.10 9 129 2.5E-5 T 11-10-2018 IPR023614 Porin domain superfamily BED32_03710 3217556072789f153a290d264b0e351a 402 Gene3D G3DSA:1.20.1600.10 31 399 5.8E-27 T 11-10-2018 BED32_03710 3217556072789f153a290d264b0e351a 402 Pfam PF02321 Outer membrane efflux protein 43 200 2.3E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_03710 3217556072789f153a290d264b0e351a 402 Pfam PF02321 Outer membrane efflux protein 237 396 1.8E-9 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 BED32_03710 3217556072789f153a290d264b0e351a 402 SUPERFAMILY SSF56954 40 398 1.7E-28 T 11-10-2018 BED32_09555 672426aade79c2226f8912852c677fde 349 Gene3D G3DSA:3.40.50.2300 1 133 9.3E-31 T 11-10-2018 BED32_09555 672426aade79c2226f8912852c677fde 349 Gene3D G3DSA:3.40.50.180 148 349 9.4E-85 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal BED32_09555 672426aade79c2226f8912852c677fde 349 SMART SM00448 4 119 2.1E-21 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09555 672426aade79c2226f8912852c677fde 349 SUPERFAMILY SSF52738 156 343 1.7E-76 T 11-10-2018 IPR035909 Methylesterase CheB, C-terminal BED32_09555 672426aade79c2226f8912852c677fde 349 PIRSF PIRSF000876 1 346 2.2E-138 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BED32_09555 672426aade79c2226f8912852c677fde 349 Pfam PF00072 Response regulator receiver domain 6 109 3.8E-24 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09555 672426aade79c2226f8912852c677fde 349 Pfam PF01339 CheB methylesterase 159 336 2.7E-63 T 11-10-2018 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BED32_09555 672426aade79c2226f8912852c677fde 349 SUPERFAMILY SSF52172 1 108 1.99E-27 T 11-10-2018 IPR011006 CheY-like superfamily BED32_09555 672426aade79c2226f8912852c677fde 349 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 4 342 41.415 T 11-10-2018 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 BED32_18440 0e669653726c99be2ab75e7088ddec85 512 Pfam PF11471 Maltoporin periplasmic N-terminal extension 3 58 1.1E-16 T 11-10-2018 IPR021570 LamB-type porin N-terminal domain BED32_18440 0e669653726c99be2ab75e7088ddec85 512 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 104 508 1.0E-180 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_18440 0e669653726c99be2ab75e7088ddec85 512 SUPERFAMILY SSF56935 97 512 2.5E-130 T 11-10-2018 BED32_18440 0e669653726c99be2ab75e7088ddec85 512 SUPERFAMILY SSF57997 27 92 3.6E-5 T 11-10-2018 BED32_18440 0e669653726c99be2ab75e7088ddec85 512 Pfam PF02264 LamB porin 100 512 2.1E-106 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 BED32_18440 0e669653726c99be2ab75e7088ddec85 512 Gene3D G3DSA:2.40.170.10 96 512 6.5E-165 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 BED32_00355 4cad04d67f4059ef48fa8c7ca18fb405 137 SUPERFAMILY SSF69635 2 127 4.08E-46 T 11-10-2018 BED32_00355 4cad04d67f4059ef48fa8c7ca18fb405 137 Gene3D G3DSA:3.30.1460.10 1 127 4.9E-59 T 11-10-2018 BED32_00355 4cad04d67f4059ef48fa8c7ca18fb405 137 TIGRFAM TIGR02513 type_III_yscB: type III secretion system chaperone, YscB family 2 137 6.2E-60 T 11-10-2018 IPR013353 Type III secretion system chaperone YscB BED32_00355 4cad04d67f4059ef48fa8c7ca18fb405 137 Pfam PF05932 Tir chaperone protein (CesT) family 4 121 2.2E-29 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 2 599 50.225 T 11-10-2018 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 Gene3D G3DSA:3.40.50.720 400 561 3.6E-35 T 11-10-2018 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 Pfam PF02254 TrkA-N domain 403 513 3.2E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 14 283 4.0E-88 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 Pfam PF00999 Sodium/hydrogen exchanger family 10 373 1.4E-65 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 BED32_01795 73bd2c24000ba0fcf35905298058d456 602 SUPERFAMILY SSF51735 402 529 6.05E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_01795 73bd2c24000ba0fcf35905298058d456 602 Gene3D G3DSA:1.20.1530.20 3 385 1.6E-81 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.546 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 Pfam PF05746 DALR anticodon binding domain 582 679 4.5E-9 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 1.7E-209 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 7.8E-37 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 7.8E-37 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 7.8E-37 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 7.8E-37 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 7.8E-37 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 SUPERFAMILY SSF109604 339 511 1.57E-15 T 11-10-2018 BED32_20745 5a6a2fe50a612367bf52c869552ab94c 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 Gene3D G3DSA:3.40.50.880 1 301 2.0E-120 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 SUPERFAMILY SSF52317 17 297 1.35E-99 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 4.6E-157 T 11-10-2018 IPR005697 Homoserine O-succinyltransferase MetA GO:0005737|GO:0008899|GO:0019281 BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.2E-131 T 11-10-2018 IPR033752 MetA family BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 1.0E-143 T 11-10-2018 BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 PIRSF PIRSF000450 1 308 4.2E-146 T 11-10-2018 IPR033752 MetA family BED32_02115 9bb779a48d9c2ed1d7f2d2efc7e203e7 309 Hamap MF_00295 Homoserine O-succinyltransferase [metAS]. 31 299 40.845 T 11-10-2018 IPR033752 MetA family BED32_16330 74f84080982381a05cacaaf5de002ddd 228 Gene3D G3DSA:3.40.470.10 2 228 2.4E-107 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 4.0E-89 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 SMART SM00987 49 210 3.3E-42 T 11-10-2018 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 11-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.543 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 SUPERFAMILY SSF52141 6 221 4.58E-97 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 SMART SM00986 49 210 3.3E-42 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_16330 74f84080982381a05cacaaf5de002ddd 228 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 1.7E-24 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 Gene3D G3DSA:3.40.50.720 124 269 5.5E-118 T 11-10-2018 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 SUPERFAMILY SSF51735 113 275 1.42E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 Gene3D G3DSA:3.90.180.10 11 321 5.5E-118 T 11-10-2018 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 SMART SM00829 11 325 1.1E-28 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 88 1.6E-9 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 11-10-2018 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 SUPERFAMILY SSF50129 2 145 4.87E-32 T 11-10-2018 IPR011032 GroES-like superfamily BED32_02270 2307e55970d9f52aadcd6180763d84c6 327 Pfam PF00107 Zinc-binding dehydrogenase 152 257 3.2E-30 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 BED32_05925 8d3a57550a378d67f379c7daf3f40e1c 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 2.1E-16 T 11-10-2018 IPR003849 Preprotein translocase YajC BED32_05925 8d3a57550a378d67f379c7daf3f40e1c 110 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 2.1E-16 T 11-10-2018 IPR003849 Preprotein translocase YajC BED32_05925 8d3a57550a378d67f379c7daf3f40e1c 110 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 102 8.5E-33 T 11-10-2018 IPR003849 Preprotein translocase YajC BED32_05925 8d3a57550a378d67f379c7daf3f40e1c 110 Pfam PF02699 Preprotein translocase subunit 24 99 3.5E-26 T 11-10-2018 IPR003849 Preprotein translocase YajC BED32_05925 8d3a57550a378d67f379c7daf3f40e1c 110 SMART SM01323 19 102 1.9E-37 T 11-10-2018 IPR003849 Preprotein translocase YajC BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 333 481 3.0E-25 T 11-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 Gene3D G3DSA:2.115.10.20 3 343 4.1E-122 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 SUPERFAMILY SSF75005 20 324 8.48E-105 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 20 457 1.2E-140 T 11-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 SUPERFAMILY SSF49899 331 483 4.99E-30 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 Gene3D G3DSA:2.60.120.560 344 483 1.0E-30 T 11-10-2018 BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 SMART SM00640 28 447 2.0E-142 T 11-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 28 326 4.3E-97 T 11-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal BED32_12925 3c812a77c7e9d7150dafd0ce2d1e3cf9 489 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 28 41 - T 11-10-2018 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 BED32_18300 0c60e73e76cab8e2560511215940bb20 376 Pfam PF02661 Fic/DOC family 117 227 4.4E-17 T 11-10-2018 IPR003812 Fido domain BED32_18300 0c60e73e76cab8e2560511215940bb20 376 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 9.6E-28 T 11-10-2018 IPR025230 Domain of unknown function DUF4172 BED32_18300 0c60e73e76cab8e2560511215940bb20 376 Gene3D G3DSA:1.10.10.10 280 373 2.6E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_18300 0c60e73e76cab8e2560511215940bb20 376 SUPERFAMILY SSF140931 104 298 7.59E-38 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_18300 0c60e73e76cab8e2560511215940bb20 376 Gene3D G3DSA:1.10.3290.10 40 279 3.4E-37 T 11-10-2018 IPR036597 Fido-like domain superfamily BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 148 3.2E-23 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 226 239 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 SUPERFAMILY SSF54211 167 251 1.77E-30 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 319 331 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 196 337 2.3E-64 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Gene3D G3DSA:3.30.230.40 163 254 4.4E-35 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 167 355 36.409 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 SUPERFAMILY SSF54211 252 342 2.28E-31 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 355 50.811 T 11-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 SUPERFAMILY SSF56784 1 156 1.33E-36 T 11-10-2018 IPR036412 HAD-like superfamily BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Pfam PF08645 Polynucleotide kinase 3 phosphatase 5 130 6.3E-5 T 11-10-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 5 144 2.5E-43 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Gene3D G3DSA:3.40.50.1000 1 162 3.4E-43 T 11-10-2018 IPR023214 HAD superfamily BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 Gene3D G3DSA:3.30.230.40 255 355 1.7E-35 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 BED32_08735 3ef6a28f7eb4a9a3a862eb6a95158b7f 355 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 162 5.3E-77 T 11-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 Gene3D G3DSA:3.30.420.150 125 303 8.8E-98 T 11-10-2018 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 Gene3D G3DSA:3.30.420.40 22 311 8.8E-98 T 11-10-2018 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 20 314 1.6E-100 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 Pfam PF02541 Ppx/GppA phosphatase family 34 316 7.4E-98 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 SUPERFAMILY SSF53067 145 318 1.47E-48 T 11-10-2018 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 PIRSF PIRSF001267 11 514 1.3E-201 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 SUPERFAMILY SSF109604 321 513 3.45E-54 T 11-10-2018 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 SUPERFAMILY SSF53067 21 141 2.5E-36 T 11-10-2018 BED32_15725 8b72414c67207489e6d49f6f7733d370 526 Gene3D G3DSA:1.10.3210.10 318 525 1.5E-82 T 11-10-2018 BED32_05710 87166007385d62bbe594c2fe268f4c49 210 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 9 128 2.0E-51 T 11-10-2018 IPR013559 YheO-like BED32_05710 87166007385d62bbe594c2fe268f4c49 210 Pfam PF13309 HTH domain 144 205 1.2E-16 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain BED32_05710 87166007385d62bbe594c2fe268f4c49 210 Pfam PF08348 YheO-like PAS domain 10 119 1.5E-32 T 11-10-2018 IPR013559 YheO-like BED32_09740 924a10fc104a723ba6b153bf556ebe4e 58 Pfam PF16080 Bacteriophage holin family HP1 4 58 7.5E-24 T 11-10-2018 IPR032118 Bacteriophage holin HP1 family BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 Pfam PF04715 Anthranilate synthase component I, N terminal region 18 154 9.3E-30 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 PRINTS PR00095 Anthranilate synthase component I signature 401 415 1.0E-17 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 PRINTS PR00095 Anthranilate synthase component I signature 306 319 1.0E-17 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 PRINTS PR00095 Anthranilate synthase component I signature 292 305 1.0E-17 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 PRINTS PR00095 Anthranilate synthase component I signature 386 400 1.0E-17 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 107 447 2.8E-130 T 11-10-2018 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 SUPERFAMILY SSF56322 7 452 3.92E-146 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 Pfam PF00425 chorismate binding enzyme 190 444 4.7E-94 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BED32_12675 2c20ce56134c6100cbe6c2a2573e5bc7 456 Gene3D G3DSA:3.60.120.10 2 454 8.3E-175 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_20525 71d32143e991bd494da0fc8a71801821 176 SUPERFAMILY SSF49401 25 175 7.46E-22 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_20525 71d32143e991bd494da0fc8a71801821 176 Gene3D G3DSA:2.60.40.1090 24 175 2.2E-24 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_10315 97cae1b4ad7caedbbf079b3db26ed07e 90 Hamap MF_01866 Protein YcgL [ycgL]. 1 88 27.677 T 11-10-2018 IPR027354 YcgL domain BED32_10315 97cae1b4ad7caedbbf079b3db26ed07e 90 Pfam PF05166 YcgL domain 3 75 1.7E-33 T 11-10-2018 IPR027354 YcgL domain BED32_10315 97cae1b4ad7caedbbf079b3db26ed07e 90 SUPERFAMILY SSF160191 1 87 1.7E-38 T 11-10-2018 IPR038068 YcgL-like superfamily BED32_10315 97cae1b4ad7caedbbf079b3db26ed07e 90 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 83 4.0E-41 T 11-10-2018 IPR027354 YcgL domain BED32_10315 97cae1b4ad7caedbbf079b3db26ed07e 90 Gene3D G3DSA:3.10.510.20 1 74 1.8E-31 T 11-10-2018 IPR038068 YcgL-like superfamily BED32_05715 a925c9726734628948c629b2870c7afd 322 Gene3D G3DSA:3.40.50.1100 16 311 6.8E-115 T 11-10-2018 BED32_05715 a925c9726734628948c629b2870c7afd 322 SUPERFAMILY SSF53686 8 318 1.57E-94 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_05715 a925c9726734628948c629b2870c7afd 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 307 1.1E-73 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_05715 a925c9726734628948c629b2870c7afd 322 Gene3D G3DSA:3.40.50.1100 54 150 6.8E-115 T 11-10-2018 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 Gene3D G3DSA:3.30.1390.10 52 122 8.2E-33 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 48 3.9E-14 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 Gene3D G3DSA:1.20.5.710 3 51 6.2E-21 T 11-10-2018 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 SUPERFAMILY SSF48300 4 58 1.44E-14 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 7.7E-32 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 122 2.0E-27 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 122 25.078 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 SUPERFAMILY SSF54736 51 122 1.05E-25 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like BED32_19840 5c366d9ea18d84ba525bd69c28554dbc 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.7E-47 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 Pfam PF12255 Insecticide toxin TcdB middle/C-terminal region 861 1003 4.0E-47 T 11-10-2018 IPR022044 Insecticide toxin TcdB middle/C-terminal BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 188 206 4.6E-34 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 264 283 4.6E-34 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 30 51 4.6E-34 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 89 105 4.6E-34 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 PRINTS PR01341 Salmonella virulence plasmid 65kDa B protein signature 297 315 4.6E-34 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 SUPERFAMILY SSF69318 381 635 3.27E-21 T 11-10-2018 BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 Pfam PF12256 Insecticide toxin TcdB middle/N-terminal region 637 811 1.4E-27 T 11-10-2018 IPR022045 Insecticide toxin TcdB middle/N-terminal BED32_02535 cb25d491335d94766fc96c85bfcec18e 1500 Pfam PF03534 Salmonella virulence plasmid 65kDa B protein 33 316 5.8E-96 T 11-10-2018 IPR003284 Salmonella virulence plasmid 65kDa B protein GO:0005737 BED32_20210 eb27961f7e8fe028a82e9e7b2cf61c7b 127 Pfam PF10694 Protein of unknown function (DUF2500) 5 120 7.6E-38 T 11-10-2018 IPR019635 Protein of unknown function DUF2500 BED32_20210 eb27961f7e8fe028a82e9e7b2cf61c7b 127 Gene3D G3DSA:2.40.50.660 35 127 4.3E-25 T 11-10-2018 BED32_15210 27fa17ee0679d67e9ff0ed00990a792c 171 Pfam PF13302 Acetyltransferase (GNAT) domain 2 139 6.3E-24 T 11-10-2018 IPR000182 GNAT domain BED32_15210 27fa17ee0679d67e9ff0ed00990a792c 171 Gene3D G3DSA:3.40.630.30 1 170 1.4E-36 T 11-10-2018 BED32_15210 27fa17ee0679d67e9ff0ed00990a792c 171 SUPERFAMILY SSF55729 4 163 7.52E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 TIGRFAM TIGR02711 symport_actP: cation/acetate symporter ActP 4 551 0.0 T 11-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 179 204 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 Pfam PF00474 Sodium:solute symporter family 64 470 9.4E-128 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 Gene3D G3DSA:1.20.1730.10 53 549 1.7E-62 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 452 472 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 Hamap MF_01426 Cation/acetate symporter ActP [actP]. 2 551 51.08 T 11-10-2018 IPR014083 Cation/acetate symporter ActP GO:0005887|GO:0015123|GO:0043879 BED32_19705 5c0670d664e7aa5b61fd3b8fcd815191 551 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 64 468 1.3E-60 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 Gene3D G3DSA:3.40.50.2000 249 458 1.8E-188 T 11-10-2018 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 Pfam PF00534 Glycosyl transferases group 1 289 448 5.3E-16 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 4.4E-169 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 Gene3D G3DSA:3.40.50.2000 3 473 1.8E-188 T 11-10-2018 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 Hamap MF_00484 Glycogen synthase [glgA]. 1 476 46.018 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 Pfam PF08323 Starch synthase catalytic domain 2 234 9.7E-71 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 BED32_01420 3c2a32558a8667dfdb7277e45fbe020f 476 SUPERFAMILY SSF53756 3 476 3.28E-115 T 11-10-2018 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 SUPERFAMILY SSF51735 1 203 9.8E-47 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 SUPERFAMILY SSF48179 204 384 2.24E-46 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 150 162 - T 11-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 Gene3D G3DSA:3.40.50.720 1 205 2.1E-82 T 11-10-2018 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 148 372 1.0E-65 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 PRINTS PR00084 Mannitol dehydrogenase signature 114 127 1.3E-16 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.3E-16 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 PRINTS PR00084 Mannitol dehydrogenase signature 170 185 1.3E-16 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 PRINTS PR00084 Mannitol dehydrogenase signature 150 163 1.3E-16 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 40.76 T 11-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 Gene3D G3DSA:1.10.1040.10 207 382 1.4E-70 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 BED32_20730 c5cc37da392aed0aa979739220f39bc2 387 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 123 1.5E-24 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 SUPERFAMILY SSF52016 421 610 2.43E-58 T 11-10-2018 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 Pfam PF00920 Dehydratase family 34 607 7.2E-215 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 Gene3D G3DSA:3.50.30.80 421 573 3.0E-54 T 11-10-2018 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 610 1.9E-260 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 SUPERFAMILY SSF143975 3 420 5.23E-132 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_00805 75f1bf42ced73fd00efd70e1eb5d37d5 616 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 610 44.873 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 BED32_01630 d343cb59527fa5cfcd919324071e29ff 332 Hamap MF_02021 Cell division protein DamX [damX]. 1 332 26.211 T 11-10-2018 IPR032899 Cell division protein DamX GO:0030428|GO:0032506 BED32_01630 d343cb59527fa5cfcd919324071e29ff 332 Gene3D G3DSA:3.30.70.1070 231 331 7.9E-33 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_01630 d343cb59527fa5cfcd919324071e29ff 332 Pfam PF05036 Sporulation related domain 248 321 1.8E-9 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 2.7E-26 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 Pfam PF03840 Preprotein translocase SecG subunit 5 72 3.8E-22 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.8E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 3.8E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 3.8E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_18950 437c728a415e9bb328f6e0f61628ef07 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 3.8E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 BED32_04315 aa95369890fd96728558a5a80476581d 320 Pfam PF04960 Glutaminase 36 320 1.0E-112 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_04315 aa95369890fd96728558a5a80476581d 320 Hamap MF_00313 Glutaminase [glsA]. 18 320 46.547 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_04315 aa95369890fd96728558a5a80476581d 320 SUPERFAMILY SSF56601 20 320 5.64E-115 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_04315 aa95369890fd96728558a5a80476581d 320 Gene3D G3DSA:3.40.710.10 17 320 3.5E-109 T 11-10-2018 BED32_04315 aa95369890fd96728558a5a80476581d 320 TIGRFAM TIGR03814 Gln_ase: glutaminase A 22 320 2.5E-131 T 11-10-2018 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 SUPERFAMILY SSF161098 279 519 4.86E-35 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 Gene3D G3DSA:1.10.3720.10 275 526 2.8E-28 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 SUPERFAMILY SSF161098 28 254 3.6E-36 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 253 1.0E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 345 524 7.1E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_15175 7fa7cdc9c4fe029e7335d5a5bf0e4512 528 Gene3D G3DSA:1.10.3720.10 28 265 4.2E-40 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 64 77 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 Gene3D G3DSA:3.40.190.10 128 221 3.4E-63 T 11-10-2018 BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 SMART SM00062 40 263 1.1E-67 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 SUPERFAMILY SSF53850 12 262 4.97E-67 T 11-10-2018 BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 261 3.1E-59 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_21515 67e7e09ca1a1ab6c805343ec9aaea189 284 Gene3D G3DSA:3.40.190.10 32 256 3.4E-63 T 11-10-2018 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 4.5E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 Pfam PF01467 Cytidylyltransferase-like 345 469 1.0E-15 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 6 312 2.2E-127 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 Gene3D G3DSA:3.40.1190.20 2 309 4.6E-111 T 11-10-2018 IPR029056 Ribokinase-like BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 43.233 T 11-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 4.5E-63 T 11-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 SUPERFAMILY SSF52374 340 470 2.22E-22 T 11-10-2018 BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 Gene3D G3DSA:3.40.50.620 319 475 1.0E-38 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 Pfam PF00294 pfkB family carbohydrate kinase 13 305 1.0E-52 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_03455 a90f1fa20b917472aa953a5e083d0943 476 SUPERFAMILY SSF53613 12 310 2.96E-57 T 11-10-2018 IPR029056 Ribokinase-like BED32_04365 d0a17d98e8f1190740fab35d0c728788 294 Gene3D G3DSA:3.60.110.10 1 293 6.1E-105 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04365 d0a17d98e8f1190740fab35d0c728788 294 SUPERFAMILY SSF56317 1 285 1.27E-81 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04365 d0a17d98e8f1190740fab35d0c728788 294 TIGRFAM TIGR03381 agmatine_aguB: N-carbamoylputrescine amidase 4 284 7.5E-146 T 11-10-2018 IPR017755 N-carbamoylputrescine amidase GO:0006596|GO:0050126 KEGG: 00330+3.5.1.53|MetaCyc: PWY-43 BED32_04365 d0a17d98e8f1190740fab35d0c728788 294 Pfam PF00795 Carbon-nitrogen hydrolase 5 268 5.0E-54 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_09645 7da06706cb35b757ffa14f7d47380588 214 Pfam PF05954 Phage late control gene D protein (GPD) 6 200 9.6E-24 T 11-10-2018 BED32_21720 f09b041687c16e387def9c81ccd6bae0 690 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 180 564 3.6E-97 T 11-10-2018 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain BED32_21720 f09b041687c16e387def9c81ccd6bae0 690 SUPERFAMILY SSF52540 193 570 3.04E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21720 f09b041687c16e387def9c81ccd6bae0 690 Gene3D G3DSA:3.40.50.300 163 564 3.6E-103 T 11-10-2018 BED32_21720 f09b041687c16e387def9c81ccd6bae0 690 Gene3D G3DSA:1.10.8.80 256 368 3.6E-103 T 11-10-2018 BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 SUPERFAMILY SSF53383 2 375 9.65E-100 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 PIRSF PIRSF000390 1 376 1.0E-115 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 Gene3D G3DSA:3.90.1150.10 250 376 1.1E-23 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 371 2.0E-85 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 Hamap MF_02026 dTDP-4-amino-4,6-dideoxygalactose transaminase [wecE]. 1 376 79.356 T 11-10-2018 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE GO:0009246|GO:0019180 MetaCyc: PWY-7315 BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 Gene3D G3DSA:3.40.640.10 1 249 2.7E-83 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_20445 eedb546f0c0294400fb52ab9cd70d6f6 376 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 1 375 2.7E-212 T 11-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 Pfam PF00072 Response regulator receiver domain 190 312 2.2E-13 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 SUPERFAMILY SSF52172 189 320 3.84E-21 T 11-10-2018 IPR011006 CheY-like superfamily BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 SMART SM00448 187 312 1.4E-11 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 PIRSF PIRSF002867 1 320 8.1E-100 T 11-10-2018 IPR024181 Chemotaxis response regulator CheV BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 Gene3D G3DSA:2.40.50.180 45 161 1.9E-21 T 11-10-2018 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 Gene3D G3DSA:2.30.30.40 36 155 1.9E-21 T 11-10-2018 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 SUPERFAMILY SSF50341 17 164 2.35E-25 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 Gene3D G3DSA:3.40.50.2300 189 324 3.8E-21 T 11-10-2018 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 Pfam PF01584 CheW-like domain 21 163 2.4E-31 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_09155 9c20d3a404a97ddee16ca55566505f68 324 SMART SM00260 17 161 5.6E-20 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_19320 af50826102eb748d78d1b0d9fa12b8ec 43 Pfam PF08085 Entericidin EcnA/B family 22 42 7.7E-11 T 11-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 PIRSF PIRSF000167 4 454 1.7E-174 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 Gene3D G3DSA:1.10.10.920 364 457 2.3E-36 T 11-10-2018 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 Gene3D G3DSA:3.80.30.20 1 363 1.1E-138 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 Pfam PF06969 HemN C-terminal domain 364 431 7.6E-11 T 11-10-2018 IPR010723 HemN, C-terminal BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 8 457 1.4E-220 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 SUPERFAMILY SSF102114 6 444 1.7E-146 T 11-10-2018 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 SMART SM00729 52 272 1.7E-55 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_21270 7e8c01ae0709951bcbbfb3655b8b9ac5 457 Pfam PF04055 Radical SAM superfamily 57 226 2.2E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_14235 1d559aa9fb2601ae60fcea0b8df58e0e 597 PIRSF PIRSF004950 6 597 4.2E-238 T 11-10-2018 IPR012159 Inner membrane protein YejM BED32_14235 1d559aa9fb2601ae60fcea0b8df58e0e 597 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 5.6E-107 T 11-10-2018 IPR024588 Inner membrane protein YejM, N-terminal BED32_14235 1d559aa9fb2601ae60fcea0b8df58e0e 597 Pfam PF00884 Sulfatase 260 511 1.3E-22 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BED32_14235 1d559aa9fb2601ae60fcea0b8df58e0e 597 Gene3D G3DSA:3.40.720.10 251 523 1.4E-37 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_14235 1d559aa9fb2601ae60fcea0b8df58e0e 597 SUPERFAMILY SSF53649 257 580 4.28E-48 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_04895 7e950eeab6938ee9802c594060e40ed4 162 SUPERFAMILY SSF142433 5 159 9.55E-58 T 11-10-2018 IPR036653 CinA-like, C-terminal BED32_04895 7e950eeab6938ee9802c594060e40ed4 162 Gene3D G3DSA:3.90.950.20 1 161 7.8E-62 T 11-10-2018 IPR036653 CinA-like, C-terminal BED32_04895 7e950eeab6938ee9802c594060e40ed4 162 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 13 158 7.7E-56 T 11-10-2018 IPR008136 CinA, C-terminal BED32_04895 7e950eeab6938ee9802c594060e40ed4 162 Pfam PF02464 Competence-damaged protein 8 159 1.4E-58 T 11-10-2018 IPR008136 CinA, C-terminal BED32_00140 398b45e255991bd640e3f76a4448d984 217 SUPERFAMILY SSF53098 110 212 1.26E-20 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00140 398b45e255991bd640e3f76a4448d984 217 Gene3D G3DSA:3.30.420.10 112 216 8.7E-10 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_00140 398b45e255991bd640e3f76a4448d984 217 Pfam PF00665 Integrase core domain 114 212 4.8E-14 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_00140 398b45e255991bd640e3f76a4448d984 217 Pfam PF13276 HTH-like domain 41 99 5.5E-7 T 11-10-2018 IPR025948 HTH-like domain BED32_03470 a0920124223931e59dcea0894639c258 212 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 13 209 1.9E-80 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_03470 a0920124223931e59dcea0894639c258 212 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 11 212 40.902 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_03470 a0920124223931e59dcea0894639c258 212 Gene3D G3DSA:3.90.870.10 1 212 1.1E-95 T 11-10-2018 BED32_03470 a0920124223931e59dcea0894639c258 212 SUPERFAMILY SSF55821 7 210 2.29E-85 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BED32_03470 a0920124223931e59dcea0894639c258 212 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 17 208 2.2E-82 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 BED32_03875 2535556e4e9bfe4e8f80d4b70c1d3852 234 Gene3D G3DSA:2.30.30.760 172 233 1.2E-11 T 11-10-2018 BED32_03875 2535556e4e9bfe4e8f80d4b70c1d3852 234 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 93 228 1.4E-40 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BED32_03875 2535556e4e9bfe4e8f80d4b70c1d3852 234 Gene3D G3DSA:3.90.1210.10 106 170 2.7E-6 T 11-10-2018 BED32_03875 2535556e4e9bfe4e8f80d4b70c1d3852 234 SMART SM00858 105 167 4.2E-10 T 11-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 BED32_03875 2535556e4e9bfe4e8f80d4b70c1d3852 234 Pfam PF13144 Chaperone for flagella basal body P-ring formation 26 228 6.4E-53 T 11-10-2018 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal BED32_11775 2b7425a83928525c5187589371431b39 250 Pfam PF08861 Domain of unknown function DUF1828 26 99 1.6E-7 T 11-10-2018 IPR014960 Domain of unknown function DUF1828 BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 Gene3D G3DSA:3.30.420.40 202 256 1.0E-16 T 11-10-2018 BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 Gene3D G3DSA:3.30.420.40 99 201 1.0E-16 T 11-10-2018 BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 Pfam PF00480 ROK family 117 238 1.2E-6 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 SUPERFAMILY SSF46785 13 79 1.36E-7 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 Gene3D G3DSA:1.10.10.10 6 76 1.9E-10 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_12525 6e5b423d2f9c5f9318c086c73343833d 341 SUPERFAMILY SSF53067 80 196 5.3E-12 T 11-10-2018 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PIRSF PIRSF019574 1 369 1.9E-142 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 Gene3D G3DSA:3.40.190.10 135 363 6.7E-141 T 11-10-2018 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 Pfam PF13416 Bacterial extracellular solute-binding protein 46 334 9.6E-33 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 218 237 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 268 287 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 313 339 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 157 171 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 180 199 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 7.0E-76 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 SUPERFAMILY SSF53850 28 368 9.62E-104 T 11-10-2018 BED32_13910 5b882bbe9592f96d2a3febd97b560315 369 Gene3D G3DSA:3.40.190.10 31 337 6.7E-141 T 11-10-2018 BED32_00100 50c99b5927b2f8885183dc60e9e6cc16 146 SUPERFAMILY SSF53098 94 140 1.18E-9 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00100 50c99b5927b2f8885183dc60e9e6cc16 146 Pfam PF00665 Integrase core domain 101 141 1.1E-7 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_00300 0dadbdac9e6faefda129815ccc18a702 115 SUPERFAMILY SSF64449 1 111 2.48E-47 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_00300 0dadbdac9e6faefda129815ccc18a702 115 Pfam PF09013 YopH, N-terminal 31 109 2.0E-11 T 11-10-2018 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal GO:0004725|GO:0006470|GO:0009405 BED32_00300 0dadbdac9e6faefda129815ccc18a702 115 Gene3D G3DSA:3.30.1570.10 4 115 3.0E-29 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 Pfam PF03797 Autotransporter beta-domain 715 958 5.7E-36 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 SUPERFAMILY SSF103515 678 981 4.97E-38 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 TIGRFAM TIGR04415 O_hepto_targRPT: autotransporter passenger strand-loop-strand repeat 188 219 9.3E-6 T 11-10-2018 IPR030930 Adhesin of bacterial autotransporter system BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 Gene3D G3DSA:2.160.20.20 82 248 2.1E-12 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 Gene3D G3DSA:2.40.128.130 670 981 4.1E-72 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 412 981 3.3E-82 T 11-10-2018 IPR006315 Outer membrane autotransporter barrel GO:0019867 BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 SUPERFAMILY SSF51126 101 531 6.91E-30 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 SMART SM00869 712 970 1.6E-29 T 11-10-2018 IPR005546 Autotransporter beta-domain BED32_03300 0e32b6b25d39f65000b6529d0ceed411 981 Gene3D G3DSA:2.160.20.20 351 532 3.0E-38 T 11-10-2018 IPR012332 P22 tailspike-like, C-terminal domain superfamily BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 5.6E-58 T 11-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.7E-5 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.7E-5 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.7E-5 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 SUPERFAMILY SSF46955 1 126 2.12E-35 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 SMART SM00422 1 70 3.8E-29 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 Pfam PF13411 MerR HTH family regulatory protein 1 68 1.2E-19 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_06405 e0b14e1be36c234b284a1dc9e54e9611 139 Gene3D G3DSA:1.10.1660.10 1 125 1.8E-32 T 11-10-2018 BED32_03990 f0619350d1db1218ad5c9f7dc8af056f 302 SUPERFAMILY SSF103088 155 273 4.05E-19 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_03990 f0619350d1db1218ad5c9f7dc8af056f 302 Pfam PF00691 OmpA family 170 266 4.1E-13 T 11-10-2018 IPR006665 OmpA-like domain BED32_03990 f0619350d1db1218ad5c9f7dc8af056f 302 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 17 67 7.6E-15 T 11-10-2018 IPR025713 Motility protein B, N-terminal domain BED32_03990 f0619350d1db1218ad5c9f7dc8af056f 302 Gene3D G3DSA:3.30.1330.60 108 289 1.5E-41 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 SUPERFAMILY SSF53850 91 322 3.36E-43 T 11-10-2018 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 Gene3D G3DSA:1.10.10.10 1 86 1.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 63 1.4E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 Pfam PF03466 LysR substrate binding domain 92 288 5.7E-41 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 SUPERFAMILY SSF46785 1 85 7.39E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 Gene3D G3DSA:3.40.190.10 92 303 4.3E-100 T 11-10-2018 BED32_11940 fd76311ae685ef27775c35c5e12c1879 324 Gene3D G3DSA:3.40.190.10 167 267 4.3E-100 T 11-10-2018 BED32_12375 7af125c71885c4c23cdcdedf5a9ab138 215 SUPERFAMILY SSF55729 10 178 1.79E-34 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_12375 7af125c71885c4c23cdcdedf5a9ab138 215 Pfam PF13302 Acetyltransferase (GNAT) domain 33 154 8.9E-14 T 11-10-2018 IPR000182 GNAT domain BED32_12375 7af125c71885c4c23cdcdedf5a9ab138 215 Gene3D G3DSA:3.40.630.30 1 214 1.4E-55 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 SUPERFAMILY SSF111369 124 263 4.05E-9 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Gene3D G3DSA:2.40.50.100 50 84 2.3E-13 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Gene3D G3DSA:2.40.30.170 228 347 3.5E-27 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 SUPERFAMILY SSF111369 51 111 1.31E-9 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Pfam PF13437 HlyD family secretion protein 214 329 1.9E-10 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Pfam PF13533 Biotin-lipoyl like 51 99 5.5E-13 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Gene3D G3DSA:1.10.287.470 118 185 2.2E-6 T 11-10-2018 BED32_04205 469c28d0ff8b4be892377cf76328779c 349 Gene3D G3DSA:1.10.287.470 85 114 2.3E-13 T 11-10-2018 BED32_10325 aa6c487dc131f752d618c5354b548f26 218 Gene3D G3DSA:3.90.850.10 1 218 2.2E-75 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BED32_10325 aa6c487dc131f752d618c5354b548f26 218 SUPERFAMILY SSF56529 11 211 1.57E-67 T 11-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 BED32_10325 aa6c487dc131f752d618c5354b548f26 218 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 18 205 2.4E-53 T 11-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 BED32_05005 5368265a2f6b0002eafbc0cca94739c1 447 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 444 2.6E-158 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_05005 5368265a2f6b0002eafbc0cca94739c1 447 PIRSF PIRSF004539 1 447 1.9E-184 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_05005 5368265a2f6b0002eafbc0cca94739c1 447 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 379 2.6E-150 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 BED32_05875 81ada1af28e8b35462795b1382c0375c 458 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BED32_05875 81ada1af28e8b35462795b1382c0375c 458 Gene3D G3DSA:1.20.1740.10 7 458 7.8E-61 T 11-10-2018 BED32_05875 81ada1af28e8b35462795b1382c0375c 458 Pfam PF00324 Amino acid permease 17 455 6.5E-108 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BED32_05875 81ada1af28e8b35462795b1382c0375c 458 PIRSF PIRSF006060 4 458 2.1E-70 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 Pfam PF13354 Beta-lactamase enzyme family 59 266 1.9E-42 T 11-10-2018 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 147 171 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 38 62 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 173 198 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 111 136 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 209 224 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 226 241 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 PRINTS PR00118 Beta-lactamase class A signature 69 86 3.6E-68 T 11-10-2018 IPR000871 Beta-lactamase, class-A GO:0008800|GO:0030655|GO:0046677 KEGG: 00311+3.5.2.6 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 Gene3D G3DSA:3.40.710.10 33 294 2.8E-79 T 11-10-2018 BED32_11405 513405b7871e12abdfe39cb452c7881d 294 SUPERFAMILY SSF56601 34 293 2.15E-79 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_11405 513405b7871e12abdfe39cb452c7881d 294 ProSitePatterns PS00146 Beta-lactamase class-A active site. 71 86 - T 11-10-2018 IPR023650 Beta-lactamase, class-A active site KEGG: 00311+3.5.2.6 BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 SUPERFAMILY SSF52540 12 245 4.61E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 Pfam PF00005 ABC transporter 27 182 2.0E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 SMART SM00382 36 238 4.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 12 258 7.3E-121 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 BED32_21500 0de03a2c4d941cfcfc789efff13c9c1b 258 Gene3D G3DSA:3.40.50.300 10 256 8.7E-68 T 11-10-2018 BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 Hamap MF_00201 DNA repair protein RecO [recO]. 1 231 22.42 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 Gene3D G3DSA:1.20.1440.120 79 236 2.4E-54 T 11-10-2018 BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 SUPERFAMILY SSF57863 86 173 7.32E-9 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 Pfam PF02565 Recombination protein O C terminal 83 226 1.6E-23 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 Pfam PF11967 Recombination protein O N terminal 4 76 1.8E-21 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 SUPERFAMILY SSF50249 4 75 9.25E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 Gene3D G3DSA:2.40.50.140 1 78 1.5E-31 T 11-10-2018 BED32_16235 2475ddefc3ae75ccdaeb8ba732995414 241 TIGRFAM TIGR00613 reco: DNA repair protein RecO 5 230 8.9E-37 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 SUPERFAMILY SSF58104 234 507 3.53E-73 T 11-10-2018 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 Pfam PF02203 Tar ligand binding domain homologue 3 159 7.7E-13 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 SUPERFAMILY SSF47170 21 169 2.12E-5 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BED32_03785 454334d97086c89987c79d4e99c24ce6 514 SMART SM00283 259 506 4.4E-91 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 280 309 4.2E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 434 463 4.2E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 4.2E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 4.2E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 15 4.2E-60 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 Gene3D G3DSA:1.10.287.950 206 508 3.1E-92 T 11-10-2018 BED32_03785 454334d97086c89987c79d4e99c24ce6 514 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 317 474 3.2E-56 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_10380 b3c76c38ede07d8a1b49bd69b7d6304c 80 Pfam PF07351 Protein of unknown function (DUF1480) 1 79 1.5E-42 T 11-10-2018 IPR009950 Protein of unknown function DUF1480 BED32_10380 b3c76c38ede07d8a1b49bd69b7d6304c 80 ProDom PD060427 YEBV CYTOPLASMIC Y1856 ESCHERICHIA ECS2546 YPO1694 COLI STY1982 SIMILAR 3 79 4.0E-29 T 11-10-2018 IPR009950 Protein of unknown function DUF1480 BED32_00920 2ce2490d3735496dee7eca39b66c1949 487 Gene3D G3DSA:3.40.50.1820 107 347 7.4E-29 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_00920 2ce2490d3735496dee7eca39b66c1949 487 SUPERFAMILY SSF53474 75 342 3.3E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_00920 2ce2490d3735496dee7eca39b66c1949 487 Pfam PF12146 Serine aminopeptidase, S33 118 238 3.4E-11 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 BED32_12250 5e6644d1e5faba160c6955f221808438 292 PIRSF PIRSF016020 8 292 7.7E-53 T 11-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 BED32_12250 5e6644d1e5faba160c6955f221808438 292 Pfam PF01263 Aldose 1-epimerase 29 272 2.5E-42 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 BED32_12250 5e6644d1e5faba160c6955f221808438 292 SUPERFAMILY SSF74650 8 273 1.88E-69 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_12250 5e6644d1e5faba160c6955f221808438 292 Gene3D G3DSA:2.70.98.10 1 289 1.1E-90 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 155 175 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 293 312 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 19 42 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 193 215 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 91 111 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 232 251 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 327 345 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 348 367 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PRINTS PR00166 Aromatic amino acid permease signature 46 65 5.5E-98 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 PIRSF PIRSF006060 13 413 4.1E-10 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 16 394 1.3E-147 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 Pfam PF03222 Tryptophan/tyrosine permease family 11 402 1.2E-143 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 BED32_14120 0a98f986c62b7e92cdd702e8f16e8be3 414 Gene3D G3DSA:1.20.1740.10 11 414 5.8E-6 T 11-10-2018 BED32_15205 71120165dec18032c4a4e0f7f5c69155 411 Gene3D G3DSA:3.40.640.10 70 293 3.8E-134 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_15205 71120165dec18032c4a4e0f7f5c69155 411 Gene3D G3DSA:3.90.1150.10 294 391 3.8E-134 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_15205 71120165dec18032c4a4e0f7f5c69155 411 Pfam PF00155 Aminotransferase class I and II 37 387 4.6E-56 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_15205 71120165dec18032c4a4e0f7f5c69155 411 SUPERFAMILY SSF53383 10 394 5.11E-106 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 Gene3D G3DSA:3.10.20.310 64 152 2.8E-8 T 11-10-2018 BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 209 517 2.3E-96 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 Pfam PF08479 POTRA domain, ShlB-type 79 152 2.0E-17 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 PIRSF PIRSF029745 1 555 1.3E-128 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 Gene3D G3DSA:2.40.160.50 181 555 3.5E-75 T 11-10-2018 BED32_02150 43d29570c1b0bc1acdceb2b644daeef6 555 Pfam PF17287 POTRA domain 154 204 5.7E-14 T 11-10-2018 IPR035251 ShlB, POTRA domain BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 6.2E-41 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 294 316 6.2E-41 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 6.2E-41 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 6.2E-41 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 6.2E-41 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 Gene3D G3DSA:3.50.50.60 10 333 2.3E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 456 1.8E-35 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 309 316 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 424 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 42 57 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 431 451 1.2E-68 T 11-10-2018 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 PIRSF PIRSF000350 1 469 1.3E-85 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 SUPERFAMILY SSF51905 1 338 3.58E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 329 2.6E-63 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 SUPERFAMILY SSF55424 344 467 5.84E-39 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 459 5.1E-148 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 Gene3D G3DSA:3.30.390.30 347 468 1.1E-45 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 BED32_17755 f295b7a74b924c2448ee8e56d357d90b 475 Gene3D G3DSA:3.50.50.60 151 272 2.3E-124 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_19975 a634385e41aa3bb3def9046510a556c5 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 2.7E-82 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 Gene3D G3DSA:3.40.47.10 4 267 7.7E-153 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 PIRSF PIRSF000429 1 387 9.0E-132 T 11-10-2018 IPR002155 Thiolase GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 SUPERFAMILY SSF53901 1 258 3.4E-78 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 Gene3D G3DSA:3.40.47.10 134 381 7.7E-153 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 Pfam PF02803 Thiolase, C-terminal domain 261 386 1.3E-49 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 2.3E-142 T 11-10-2018 IPR002155 Thiolase GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 11-10-2018 IPR020613 Thiolase, conserved site GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 11-10-2018 IPR020610 Thiolase, active site GO:0016747 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 SUPERFAMILY SSF53901 262 386 9.61E-45 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 3 387 1.3E-225 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 BED32_19975 a634385e41aa3bb3def9046510a556c5 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.458 T 11-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 BED32_09425 747f74fe053296a8ca72ea4bfd142cbf 66 Pfam PF14001 YdfZ protein 3 66 3.2E-34 T 11-10-2018 IPR017704 Putative selenium-binding protein YdfZ BED32_09425 747f74fe053296a8ca72ea4bfd142cbf 66 TIGRFAM TIGR03318 YdfZ_fam: putative selenium-binding protein YdfZ 2 66 6.2E-34 T 11-10-2018 IPR017704 Putative selenium-binding protein YdfZ BED32_14675 7718ffbc62dcfa3d5a08889ffca1bb81 95 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 85 5.7E-12 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 BED32_14675 7718ffbc62dcfa3d5a08889ffca1bb81 95 SUPERFAMILY SSF52794 1 86 4.71E-20 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 BED32_14675 7718ffbc62dcfa3d5a08889ffca1bb81 95 Gene3D G3DSA:3.40.50.2300 1 90 1.5E-19 T 11-10-2018 BED32_22025 b638e7830ef38ffaf94480fed2213d8a 80 SUPERFAMILY SSF46689 1 54 5.38E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_22025 b638e7830ef38ffaf94480fed2213d8a 80 Pfam PF01527 Transposase 3 71 3.5E-8 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_02950 a671e7e876526dc2da83a49dac969092 334 Pfam PF00571 CBS domain 280 331 3.7E-6 T 11-10-2018 IPR000644 CBS domain BED32_02950 a671e7e876526dc2da83a49dac969092 334 Pfam PF00571 CBS domain 212 267 1.4E-5 T 11-10-2018 IPR000644 CBS domain BED32_02950 a671e7e876526dc2da83a49dac969092 334 Gene3D G3DSA:3.40.50.10490 15 206 2.9E-65 T 11-10-2018 BED32_02950 a671e7e876526dc2da83a49dac969092 334 Gene3D G3DSA:3.10.580.10 207 331 1.7E-45 T 11-10-2018 BED32_02950 a671e7e876526dc2da83a49dac969092 334 Pfam PF01380 SIS domain 53 183 7.0E-31 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_02950 a671e7e876526dc2da83a49dac969092 334 PIRSF PIRSF004692 2 334 1.4E-134 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BED32_02950 a671e7e876526dc2da83a49dac969092 334 SUPERFAMILY SSF53697 20 331 1.42E-66 T 11-10-2018 BED32_02950 a671e7e876526dc2da83a49dac969092 334 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 56 324 2.3E-124 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 SUPERFAMILY SSF51717 6 274 2.88E-106 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 16 271 8.8E-103 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 Pfam PF00809 Pterin binding enzyme 18 257 4.4E-89 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_18960 6a5b190a5222e5acc6ed95fada788176 277 Gene3D G3DSA:3.20.20.20 1 276 8.7E-112 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 BED32_09705 6b71c50194344f70d520409f72f43748 402 Pfam PF07690 Major Facilitator Superfamily 21 193 4.3E-22 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_09705 6b71c50194344f70d520409f72f43748 402 Gene3D G3DSA:1.20.1250.20 11 195 2.8E-19 T 11-10-2018 BED32_09705 6b71c50194344f70d520409f72f43748 402 SUPERFAMILY SSF103473 6 393 8.5E-38 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_09705 6b71c50194344f70d520409f72f43748 402 Gene3D G3DSA:1.20.1250.20 205 394 1.8E-5 T 11-10-2018 BED32_08020 af85435d16f78f9775128701bf77e080 159 Pfam PF01967 MoaC family 15 150 7.9E-54 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08020 af85435d16f78f9775128701bf77e080 159 Gene3D G3DSA:3.30.70.640 1 159 9.8E-70 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08020 af85435d16f78f9775128701bf77e080 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 35.873 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08020 af85435d16f78f9775128701bf77e080 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 9.5E-71 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_08020 af85435d16f78f9775128701bf77e080 159 SUPERFAMILY SSF55040 11 155 2.22E-60 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 ProSitePatterns PS00635 Gram-negative pili assembly chaperone signature. 116 133 - T 11-10-2018 IPR018046 Pili assembly chaperone, conserved site BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 PRINTS PR00969 Pili chaperone signature 156 171 6.3E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 PRINTS PR00969 Pili chaperone signature 117 134 6.3E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 PRINTS PR00969 Pili chaperone signature 191 206 6.3E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 PRINTS PR00969 Pili chaperone signature 44 53 6.3E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 PRINTS PR00969 Pili chaperone signature 89 110 6.3E-30 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 44 174 2.4E-31 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 196 260 4.0E-16 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 SUPERFAMILY SSF49584 169 264 6.54E-20 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 Gene3D G3DSA:2.60.40.10 176 264 1.6E-25 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 Gene3D G3DSA:2.60.40.10 44 172 2.8E-38 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_14065 a43e47b069d22cfc4b99d1a3a332f05e 267 SUPERFAMILY SSF49354 40 174 5.23E-33 T 11-10-2018 IPR008962 PapD-like superfamily BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 SUPERFAMILY SSF51621 4 264 2.11E-103 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 PIRSF PIRSF000388 1 265 5.9E-98 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 41.853 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 Gene3D G3DSA:3.20.20.60 1 264 2.8E-104 T 11-10-2018 BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 265 1.6E-117 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BED32_17660 a4ca70c521c7c1db7d9610e94e26d425 265 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 3.6E-105 T 11-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 Gene3D G3DSA:3.30.70.940 1 162 8.7E-54 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 SUPERFAMILY SSF82679 1 100 8.76E-26 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 SMART SM00738 1 100 1.9E-25 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 162 45.501 T 11-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 159 7.6E-56 T 11-10-2018 IPR010215 Transcription antitermination protein RfaH GO:0006355 BED32_19990 28863fc051f895b345a5f1c187f69dc0 162 Pfam PF02357 Transcription termination factor nusG 2 94 2.4E-16 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 BED32_04480 b69bc959b2974690f8798c70a9f749f8 241 Gene3D G3DSA:3.30.110.170 27 228 2.1E-52 T 11-10-2018 BED32_04480 b69bc959b2974690f8798c70a9f749f8 241 Gene3D G3DSA:3.30.70.2970 36 143 2.1E-52 T 11-10-2018 BED32_04480 b69bc959b2974690f8798c70a9f749f8 241 Pfam PF04402 Protein of unknown function (DUF541) 26 227 3.9E-45 T 11-10-2018 IPR007497 Protein of unknown function DUF541 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 SMART SM00842 10 196 1.3E-96 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 1.1E-161 T 11-10-2018 IPR020823 Cell division protein FtsA BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.90.640.10 235 300 1.9E-115 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 3.5E-30 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 197 359 1.9E-115 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.1490.110 87 169 1.9E-115 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Gene3D G3DSA:3.30.420.40 13 379 1.9E-115 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 198 384 2.13E-47 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 SUPERFAMILY SSF53067 8 221 7.12E-62 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 418 29.689 T 11-10-2018 IPR020823 Cell division protein FtsA BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 Pfam PF14450 Cell division protein FtsA 207 381 1.2E-24 T 11-10-2018 BED32_17860 fe46aa74b1be92432285782c6bf33bd4 418 PIRSF PIRSF003101 1 418 1.2E-153 T 11-10-2018 IPR020823 Cell division protein FtsA BED32_00345 0e7d33c59b11b64282e36066a865caa6 203 Gene3D G3DSA:3.30.70.1770 69 132 7.3E-38 T 11-10-2018 BED32_00345 0e7d33c59b11b64282e36066a865caa6 203 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 1 197 8.4E-101 T 11-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain BED32_00345 0e7d33c59b11b64282e36066a865caa6 203 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 1 197 5.7E-58 T 11-10-2018 IPR012843 Type III secretion system YscD/HrpQ BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 424 51.753 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 242 279 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 Gene3D G3DSA:3.90.1150.10 10 415 1.8E-176 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 Pfam PF00202 Aminotransferase class-III 27 421 5.7E-132 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 PIRSF PIRSF000521 30 424 3.2E-29 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 13 421 2.9E-186 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 Gene3D G3DSA:3.40.640.10 61 330 1.8E-176 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_07970 e35759881ad6c652c5ffe375d9baba5a 425 SUPERFAMILY SSF53383 1 423 4.7E-137 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_17275 1621c2fb9d4af4d605dcfc06a5a08b39 66 SUPERFAMILY SSF46955 6 61 8.06E-5 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_17275 1621c2fb9d4af4d605dcfc06a5a08b39 66 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 54 2.0E-18 T 11-10-2018 IPR010260 DNA-binding transcriptional activator AlpA BED32_17275 1621c2fb9d4af4d605dcfc06a5a08b39 66 Gene3D G3DSA:1.10.238.160 5 63 6.2E-6 T 11-10-2018 BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 58 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 SUPERFAMILY SSF46689 10 73 9.48E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 SUPERFAMILY SSF48498 86 193 1.19E-5 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 Gene3D G3DSA:1.10.357.10 9 198 1.5E-73 T 11-10-2018 BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 26 61 2.1E-8 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_21015 6ea3bf39942eeef77abcbfe84a309c56 198 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 198 40.963 T 11-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 BED32_16105 a6e0ca35e314f9063ffa479d57976a5f 385 Pfam PF12832 MFS_1 like family 8 360 8.8E-48 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain BED32_16105 a6e0ca35e314f9063ffa479d57976a5f 385 SUPERFAMILY SSF103473 7 372 3.79E-37 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_16105 a6e0ca35e314f9063ffa479d57976a5f 385 PIRSF PIRSF004925 1 385 8.1E-109 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter BED32_16105 a6e0ca35e314f9063ffa479d57976a5f 385 Gene3D G3DSA:1.20.1250.20 186 376 6.0E-36 T 11-10-2018 BED32_16105 a6e0ca35e314f9063ffa479d57976a5f 385 Gene3D G3DSA:1.20.1250.20 4 182 6.7E-17 T 11-10-2018 BED32_02530 bbbb3edd3db8f0988cc027e9f8e0e793 103 Pfam PF16083 LydA holin phage, holin superfamily III 15 92 7.5E-25 T 11-10-2018 IPR032126 LydA-like holin BED32_13615 9a90bde296b68418e5af26a6be49d7f9 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 1.5E-122 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 BED32_13615 9a90bde296b68418e5af26a6be49d7f9 250 SUPERFAMILY SSF53448 3 247 6.34E-65 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_13615 9a90bde296b68418e5af26a6be49d7f9 250 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 45.73 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 BED32_13615 9a90bde296b68418e5af26a6be49d7f9 250 Gene3D G3DSA:3.90.550.10 1 250 3.8E-98 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_13615 9a90bde296b68418e5af26a6be49d7f9 250 Pfam PF02348 Cytidylyltransferase 4 221 1.6E-69 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 BED32_16460 589fa024046168a427490b49fc87343c 327 Hamap MF_01384 Urease accessory protein UreD [ureD]. 44 312 23.245 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 BED32_16460 589fa024046168a427490b49fc87343c 327 Pfam PF01774 UreD urease accessory protein 88 301 4.0E-42 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 Gene3D G3DSA:3.90.1150.10 2 376 6.2E-151 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 PRINTS PR00799 Aspartate aminotransferase signature 160 179 1.9E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 PRINTS PR00799 Aspartate aminotransferase signature 191 203 1.9E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 PRINTS PR00799 Aspartate aminotransferase signature 326 344 1.9E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 PRINTS PR00799 Aspartate aminotransferase signature 258 283 1.9E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 SUPERFAMILY SSF53383 2 376 1.21E-109 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 228 241 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 Pfam PF00155 Aminotransferase class I and II 11 376 2.6E-79 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_02285 d9594a25561afcd68993e19a9060bf5a 381 Gene3D G3DSA:3.40.640.10 44 285 6.2E-151 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 Pfam PF00303 Thymidylate synthase 2 264 1.3E-126 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 SUPERFAMILY SSF55831 1 264 1.83E-130 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 84 264 8.1E-93 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 85 2.5E-42 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 Gene3D G3DSA:3.30.572.10 1 264 5.4E-135 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 ProSitePatterns PS00091 Thymidylate synthase active site. 126 154 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 Hamap MF_00008 Thymidylate synthase [thyA]. 1 264 39.949 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 PRINTS PR00108 Thymidylate synthase family signature 159 185 2.3E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 PRINTS PR00108 Thymidylate synthase family signature 115 134 2.3E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 PRINTS PR00108 Thymidylate synthase family signature 141 156 2.3E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 PRINTS PR00108 Thymidylate synthase family signature 197 214 2.3E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_17060 2c46ad633f284d4a8dfaf9eb5570256d 264 PRINTS PR00108 Thymidylate synthase family signature 42 63 2.3E-47 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 BED32_02770 a3c1b54688a5f4a4edec5e55e2b1db7b 446 Pfam PF01523 Putative modulator of DNA gyrase 32 323 5.7E-59 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 BED32_02770 a3c1b54688a5f4a4edec5e55e2b1db7b 446 SUPERFAMILY SSF111283 13 446 5.62E-128 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 BED32_02770 a3c1b54688a5f4a4edec5e55e2b1db7b 446 Gene3D G3DSA:3.30.2290.10 7 232 7.2E-94 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal BED32_10495 4c602afa3ff6753d9822dad228dab6d8 430 Pfam PF13416 Bacterial extracellular solute-binding protein 47 354 5.5E-25 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_10495 4c602afa3ff6753d9822dad228dab6d8 430 SUPERFAMILY SSF53850 26 427 2.64E-62 T 11-10-2018 BED32_10495 4c602afa3ff6753d9822dad228dab6d8 430 Gene3D G3DSA:3.40.190.10 30 373 5.3E-165 T 11-10-2018 BED32_10495 4c602afa3ff6753d9822dad228dab6d8 430 Gene3D G3DSA:3.40.190.10 139 415 5.3E-165 T 11-10-2018 BED32_01185 b88559bd1d3460876283a7731188f885 476 Pfam PF13401 AAA domain 126 270 5.3E-22 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01185 b88559bd1d3460876283a7731188f885 476 Gene3D G3DSA:3.40.50.300 118 284 1.3E-14 T 11-10-2018 BED32_01185 b88559bd1d3460876283a7731188f885 476 SUPERFAMILY SSF52540 79 366 1.89E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01185 b88559bd1d3460876283a7731188f885 476 SMART SM00382 123 298 8.0E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_20870 83b6d452abdb187ddebab53161f63479 165 Gene3D G3DSA:1.20.120.1490 50 159 5.1E-41 T 11-10-2018 BED32_20870 83b6d452abdb187ddebab53161f63479 165 Pfam PF07813 LTXXQ motif family protein 50 145 1.4E-20 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 BED32_20870 83b6d452abdb187ddebab53161f63479 165 PIRSF PIRSF034445 1 155 2.8E-33 T 11-10-2018 IPR012899 LTXXQ motif family protein GO:0042597 BED32_12095 f1738fff578e0fb0fc043c40a98ef59b 301 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 70 5.9E-14 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BED32_12095 f1738fff578e0fb0fc043c40a98ef59b 301 SUPERFAMILY SSF161098 99 282 1.57E-23 T 11-10-2018 IPR035906 MetI-like superfamily BED32_12095 f1738fff578e0fb0fc043c40a98ef59b 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 299 1.8E-26 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_12095 f1738fff578e0fb0fc043c40a98ef59b 301 Gene3D G3DSA:1.10.3720.10 99 297 1.3E-16 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13455 14350284f111398825120da02dec6b31 695 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 1 690 4.2E-287 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK BED32_13455 14350284f111398825120da02dec6b31 695 Pfam PF13515 Fusaric acid resistance protein-like 391 510 6.6E-24 T 11-10-2018 BED32_13455 14350284f111398825120da02dec6b31 695 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 2 690 0.0 T 11-10-2018 IPR010019 Integral membrane protein, YccS BED32_13455 14350284f111398825120da02dec6b31 695 Pfam PF12805 FUSC-like inner membrane protein yccS 52 331 5.8E-110 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal BED32_05915 a5941324229d5e86599de95c7bc7e2de 229 SUPERFAMILY SSF53474 3 224 1.66E-28 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_05915 a5941324229d5e86599de95c7bc7e2de 229 Pfam PF12697 Alpha/beta hydrolase family 7 220 6.8E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 BED32_05915 a5941324229d5e86599de95c7bc7e2de 229 Gene3D G3DSA:3.40.50.1820 1 228 8.9E-41 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_10635 19abe2d65c53eeb0d4d1f52bc89e2eae 70 Pfam PF13619 KTSC domain 7 64 8.1E-24 T 11-10-2018 IPR025309 KTSC domain BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 Pfam PF00361 Proton-conducting membrane transporter 143 427 8.7E-57 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 119 139 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 165 186 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 248 274 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 85 110 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 226 247 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 317 329 7.7E-30 T 11-10-2018 BED32_08505 b3b21cdfea1eeb70a9edf52956dbedc8 489 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 80 129 6.5E-8 T 11-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_18745 66774609b085834ad1c5434c9a9f3531 370 PIRSF PIRSF007313 1 366 6.9E-166 T 11-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 BED32_18745 66774609b085834ad1c5434c9a9f3531 370 Pfam PF05861 Bacterial phosphonate metabolism protein (PhnI) 1 356 6.6E-158 T 11-10-2018 IPR008773 Phosphonate metabolism protein PhnI GO:0019634 BED32_01585 9c4fcba0c8072d4c2542ce015d3f59cf 185 Pfam PF00293 NUDIX domain 46 124 4.6E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_01585 9c4fcba0c8072d4c2542ce015d3f59cf 185 SUPERFAMILY SSF55811 3 180 1.35E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_01585 9c4fcba0c8072d4c2542ce015d3f59cf 185 Gene3D G3DSA:3.90.79.10 7 183 2.1E-43 T 11-10-2018 BED32_01585 9c4fcba0c8072d4c2542ce015d3f59cf 185 ProSitePatterns PS00893 Nudix box signature. 79 100 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_04175 bbe8edca66fc7fdf781340e8a8be5f48 335 SUPERFAMILY SSF81345 25 331 3.27E-45 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_04175 bbe8edca66fc7fdf781340e8a8be5f48 335 Gene3D G3DSA:1.10.3470.10 22 334 2.1E-42 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_04175 bbe8edca66fc7fdf781340e8a8be5f48 335 Pfam PF01032 FecCD transport family 51 331 2.7E-41 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_11105 b7dd0a77fceefd40f06126a291589896 354 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 4 348 38.986 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 BED32_11105 b7dd0a77fceefd40f06126a291589896 354 Pfam PF05128 Domain of unknown function (DUF697) 183 342 8.9E-55 T 11-10-2018 IPR021147 Protein of unknown function DUF697 BED32_11105 b7dd0a77fceefd40f06126a291589896 354 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 57 342 8.5E-134 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 SMART SM00342 130 212 1.7E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 300 379 3.4E-35 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Pfam PF12833 Helix-turn-helix domain 136 213 7.8E-18 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 350 356 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 SUPERFAMILY SSF53155 220 298 2.75E-19 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Pfam PF02805 Metal binding domain of Ada 42 104 5.1E-31 T 11-10-2018 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Gene3D G3DSA:3.40.10.10 35 106 2.4E-30 T 11-10-2018 IPR035451 Ada-like domain superfamily BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 SUPERFAMILY SSF46689 115 162 1.22E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 SUPERFAMILY SSF46767 299 380 5.49E-30 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Gene3D G3DSA:1.10.10.10 299 384 7.6E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 301 380 7.7E-32 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 SUPERFAMILY SSF57884 39 122 1.7E-32 T 11-10-2018 IPR035451 Ada-like domain superfamily BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Gene3D G3DSA:3.30.160.70 206 298 4.5E-31 T 11-10-2018 BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 PIRSF PIRSF000409 27 388 8.9E-142 T 11-10-2018 IPR016221 Bifunctional regulatory protein Ada BED32_20885 6c12bb7ae2d3fe24ce57d8c9528db13c 392 Gene3D G3DSA:1.10.10.60 110 176 8.1E-23 T 11-10-2018 BED32_06435 f8d45910fca49b3e5da9e43fc80bb240 228 SMART SM00382 35 223 1.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06435 f8d45910fca49b3e5da9e43fc80bb240 228 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_06435 f8d45910fca49b3e5da9e43fc80bb240 228 Pfam PF00005 ABC transporter 27 174 3.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_06435 f8d45910fca49b3e5da9e43fc80bb240 228 SUPERFAMILY SSF52540 6 227 2.21E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06435 f8d45910fca49b3e5da9e43fc80bb240 228 Gene3D G3DSA:3.40.50.300 4 228 4.7E-63 T 11-10-2018 BED32_17885 f9836d1d35f365302bf8dd4828c3bf00 400 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 345 369 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17885 f9836d1d35f365302bf8dd4828c3bf00 400 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 29 396 42.031 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17885 f9836d1d35f365302bf8dd4828c3bf00 400 Pfam PF01098 Cell cycle protein 33 387 2.4E-123 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17885 f9836d1d35f365302bf8dd4828c3bf00 400 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 31 386 1.8E-134 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_09070 f08f3ebbe7c3668bd6d65c1e76cbc496 161 Pfam PF08786 DcrB 12 152 2.1E-27 T 11-10-2018 IPR014894 Protein DcrB BED32_09070 f08f3ebbe7c3668bd6d65c1e76cbc496 161 SUPERFAMILY SSF55724 5 156 1.41E-30 T 11-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich BED32_09070 f08f3ebbe7c3668bd6d65c1e76cbc496 161 Gene3D G3DSA:3.40.1000.10 4 160 6.4E-30 T 11-10-2018 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 Pfam PF03466 LysR substrate binding domain 88 292 2.2E-32 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 SUPERFAMILY SSF53850 88 294 3.08E-33 T 11-10-2018 BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 Gene3D G3DSA:3.40.190.10 92 291 5.3E-52 T 11-10-2018 BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.3E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 SUPERFAMILY SSF46785 3 83 1.06E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 Gene3D G3DSA:1.10.10.10 2 91 2.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_12280 e81c7e8f4367cf647adfa7d17078e17d 301 Gene3D G3DSA:3.40.190.10 165 266 5.3E-52 T 11-10-2018 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 158 36.593 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 SUPERFAMILY SSF69765 1 159 2.88E-64 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 158 5.8E-69 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 Gene3D G3DSA:3.30.1330.50 1 162 6.9E-71 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 Pfam PF02542 YgbB family 1 156 3.2E-65 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_04620 b9bdfe7fa191b7d975a54defdba46b5b 162 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 37 52 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 Gene3D G3DSA:3.40.50.2000 61 798 0.0 T 11-10-2018 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 PIRSF PIRSF000460 2 801 5.7E-206 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 SUPERFAMILY SSF53756 8 799 7.85E-293 T 11-10-2018 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 643 655 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 Pfam PF00343 Carbohydrate phosphorylase 94 798 0.0 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 Gene3D G3DSA:3.40.50.2000 457 784 0.0 T 11-10-2018 BED32_01470 6dbbb81732a9d888afc4425c82898285 801 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 12 798 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 37 215 2.0E-57 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 Pfam PF02527 rRNA small subunit methyltransferase G 31 212 1.1E-60 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 Gene3D G3DSA:3.40.50.150 12 217 2.0E-71 T 11-10-2018 BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 PIRSF PIRSF003078 10 217 7.2E-61 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 SUPERFAMILY SSF53335 14 215 1.82E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_21425 aa8030263e5c1c64450394c1b33b368a 217 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 24 213 28.526 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 BED32_13485 54b0a069f706f3fd29e2ef8142740104 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 172 7.8E-94 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_13485 54b0a069f706f3fd29e2ef8142740104 172 Pfam PF07977 FabA-like domain 29 158 6.0E-54 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_13485 54b0a069f706f3fd29e2ef8142740104 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.464 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 BED32_13485 54b0a069f706f3fd29e2ef8142740104 172 Gene3D G3DSA:3.10.129.10 1 172 1.5E-65 T 11-10-2018 BED32_13485 54b0a069f706f3fd29e2ef8142740104 172 SUPERFAMILY SSF54637 3 169 6.88E-57 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_05850 2be698d1251a3703bd5350660a56748d 412 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 259 4.9E-77 T 11-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 BED32_05850 2be698d1251a3703bd5350660a56748d 412 Gene3D G3DSA:3.60.21.10 1 281 8.5E-89 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_05850 2be698d1251a3703bd5350660a56748d 412 Gene3D G3DSA:3.30.160.720 283 345 1.8E-26 T 11-10-2018 BED32_05850 2be698d1251a3703bd5350660a56748d 412 SUPERFAMILY SSF56300 1 339 1.08E-58 T 11-10-2018 BED32_05850 2be698d1251a3703bd5350660a56748d 412 Pfam PF00149 Calcineurin-like phosphoesterase 1 99 1.5E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_05850 2be698d1251a3703bd5350660a56748d 412 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 282 378 1.5E-24 T 11-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain BED32_11130 72a85e3b394116689c3b5f4017034fec 323 Pfam PF13378 Enolase C-terminal domain-like 136 320 8.3E-23 T 11-10-2018 IPR029065 Enolase C-terminal domain-like BED32_11130 72a85e3b394116689c3b5f4017034fec 323 Gene3D G3DSA:3.20.20.120 116 321 1.3E-55 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_11130 72a85e3b394116689c3b5f4017034fec 323 SUPERFAMILY SSF54826 3 110 1.39E-26 T 11-10-2018 BED32_11130 72a85e3b394116689c3b5f4017034fec 323 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 2 110 1.1E-15 T 11-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain BED32_11130 72a85e3b394116689c3b5f4017034fec 323 Gene3D G3DSA:3.30.390.10 1 102 1.2E-26 T 11-10-2018 IPR029017 Enolase-like, N-terminal BED32_11130 72a85e3b394116689c3b5f4017034fec 323 SUPERFAMILY SSF51604 119 319 6.29E-51 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily BED32_11130 72a85e3b394116689c3b5f4017034fec 323 SMART SM00922 130 223 9.1E-16 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal BED32_11130 72a85e3b394116689c3b5f4017034fec 323 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 173 204 - T 11-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 4 259 6.6E-23 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 SUPERFAMILY SSF56219 1 267 7.59E-88 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 266 2.4E-105 T 11-10-2018 BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 223 234 - T 11-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 266 6.8E-89 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 BED32_12185 c6b377fa8d24eeec5a9793e6d92851d7 268 Gene3D G3DSA:3.60.10.10 1 267 1.0E-83 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BED32_04790 df64cafa6b9beabf4995d015d799608b 276 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 8 275 1.4E-104 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BED32_04790 df64cafa6b9beabf4995d015d799608b 276 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 6 275 2.7E-136 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BED32_11190 897a1a69261c7d075145a4c49dd46298 64 Pfam PF13617 YnbE-like lipoprotein 10 62 1.6E-25 T 11-10-2018 IPR025985 YnbE-like lipoprotein BED32_11190 897a1a69261c7d075145a4c49dd46298 64 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 18 64 2.0E-19 T 11-10-2018 BED32_19610 3cbcd59053b8925db6f4949aa9481936 71 TIGRFAM TIGR02105 III_needle: type III secretion apparatus needle protein 1 71 5.3E-23 T 11-10-2018 IPR011841 Type III secretion system, needle protein GO:0008565|GO:0009405|GO:0015031 BED32_19610 3cbcd59053b8925db6f4949aa9481936 71 Gene3D G3DSA:1.20.58.90 2 71 5.9E-9 T 11-10-2018 BED32_19610 3cbcd59053b8925db6f4949aa9481936 71 SUPERFAMILY SSF140129 1 67 2.09E-20 T 11-10-2018 IPR037203 Type III secretion, needle-protein-like superfamily GO:0009405|GO:0015031 BED32_19610 3cbcd59053b8925db6f4949aa9481936 71 Pfam PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF 3 71 2.6E-25 T 11-10-2018 IPR021123 Type III secretion, needle-protein-like GO:0009405|GO:0015031 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 SUPERFAMILY SSF50891 26 188 1.13E-57 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 64 81 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 58 5.0E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 69 81 5.0E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 5.0E-11 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 Gene3D G3DSA:2.40.100.10 24 189 1.2E-69 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 30 187 8.7E-48 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 BED32_01695 6dcc06bf0908136e27f1e18a5ed6ba02 189 PIRSF PIRSF001467 16 187 3.8E-29 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 Gene3D G3DSA:3.90.70.20 126 294 2.2E-5 T 11-10-2018 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 Pfam PF03543 Yersinia/Haemophilus virulence surface antigen 103 319 4.8E-66 T 11-10-2018 IPR006473 Peptidase C58, YopT-type domain GO:0004197|GO:0009405 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 SUPERFAMILY SSF54001 114 319 2.26E-46 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 216 231 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 20 36 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 103 126 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 268 288 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 130 146 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 157 183 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 PRINTS PR01376 Yersinia/Haemophilus virulence surface antigen signature 52 71 5.0E-77 T 11-10-2018 IPR003951 Peptidase C58, Yersinia/Haemophilus virulence surface antigen GO:0004197 BED32_00055 ceb7136a0f4013f46cf4a12b3e9bc040 322 TIGRFAM TIGR01586 yopT_cys_prot: cysteine protease domain, YopT-type 123 320 1.1E-57 T 11-10-2018 IPR006473 Peptidase C58, YopT-type domain GO:0004197|GO:0009405 BED32_01775 e622280279933dad7a0fb4106df7e5af 325 SUPERFAMILY SSF53756 2 323 1.1E-56 T 11-10-2018 BED32_01775 e622280279933dad7a0fb4106df7e5af 325 Gene3D G3DSA:3.40.50.2000 1 165 2.6E-22 T 11-10-2018 BED32_01775 e622280279933dad7a0fb4106df7e5af 325 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 80 301 1.1E-12 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 BED32_01775 e622280279933dad7a0fb4106df7e5af 325 Gene3D G3DSA:3.40.50.2000 170 325 2.9E-20 T 11-10-2018 BED32_19810 2173c8091355b18713ee56bc51990c1b 71 SUPERFAMILY SSF54285 7 71 2.62E-16 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BED32_19810 2173c8091355b18713ee56bc51990c1b 71 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 8 71 4.2E-17 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis BED32_19810 2173c8091355b18713ee56bc51990c1b 71 Pfam PF02597 ThiS family 9 71 5.4E-14 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BED32_19810 2173c8091355b18713ee56bc51990c1b 71 Gene3D G3DSA:3.10.20.30 6 71 2.2E-18 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 Gene3D G3DSA:3.40.1690.10 214 354 1.1E-53 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 205 223 1.5E-35 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 225 242 1.5E-35 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 269 284 1.5E-35 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 1.5E-35 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 299 320 1.5E-35 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 SUPERFAMILY SSF160544 248 351 2.09E-36 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 344 2.3E-108 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_03800 65ff3aeb933c4e760e9c8aa994dccd37 377 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 351 2.4E-105 T 11-10-2018 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 BED32_00015 78c3f2954992d5fce5086800180e29ee 306 Pfam PF05844 YopD protein 13 306 2.8E-153 T 11-10-2018 IPR008898 YopD-like BED32_14030 243c43a6c3ca1aaba318d96c23661b38 508 Pfam PF00324 Amino acid permease 25 478 1.8E-142 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BED32_14030 243c43a6c3ca1aaba318d96c23661b38 508 Gene3D G3DSA:1.20.1740.10 16 486 7.3E-64 T 11-10-2018 BED32_14030 243c43a6c3ca1aaba318d96c23661b38 508 ProSitePatterns PS00218 Amino acid permeases signature. 50 81 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BED32_14030 243c43a6c3ca1aaba318d96c23661b38 508 PIRSF PIRSF006060 3 497 3.6E-82 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Gene3D G3DSA:1.10.10.10 2 86 1.4E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Gene3D G3DSA:3.40.190.10 161 256 4.2E-14 T 11-10-2018 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Pfam PF03466 LysR substrate binding domain 90 282 4.2E-20 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 SUPERFAMILY SSF46785 3 81 2.88E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Hamap MF_01233 HTH-type transcriptional regulator HdfR [hdfR]. 3 286 51.454 T 11-10-2018 IPR020890 Transcription regulator HTH, HdfR GO:0003677|GO:0003700|GO:0045892 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Gene3D G3DSA:3.40.190.10 92 282 4.2E-14 T 11-10-2018 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 SUPERFAMILY SSF53850 90 283 3.57E-20 T 11-10-2018 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.5E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00775 d111d52ec514f2b48e6631a817bfbd69 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 2.3E-20 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_05360 01198accc4deda97df47e248f89ceced 279 Pfam PF04492 Bacteriophage replication protein O 19 113 9.6E-35 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_05360 01198accc4deda97df47e248f89ceced 279 TIGRFAM TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain 21 113 2.1E-25 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_05360 01198accc4deda97df47e248f89ceced 279 Gene3D G3DSA:1.10.10.10 17 115 6.4E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14530 80aef6e13cb55e4552a756fd09068efa 176 SUPERFAMILY SSF52540 2 167 1.38E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14530 80aef6e13cb55e4552a756fd09068efa 176 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 165 3.0E-64 T 11-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 BED32_14530 80aef6e13cb55e4552a756fd09068efa 176 Pfam PF01202 Shikimate kinase 12 130 8.8E-11 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 BED32_14530 80aef6e13cb55e4552a756fd09068efa 176 Gene3D G3DSA:3.40.50.300 2 169 1.6E-63 T 11-10-2018 BED32_03695 e2d0948d7a6f5e440983831bbe4d264c 253 Pfam PF12833 Helix-turn-helix domain 173 249 1.8E-10 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_03695 e2d0948d7a6f5e440983831bbe4d264c 253 SMART SM00342 167 249 9.3E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_03695 e2d0948d7a6f5e440983831bbe4d264c 253 SUPERFAMILY SSF46689 202 249 1.03E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03695 e2d0948d7a6f5e440983831bbe4d264c 253 Gene3D G3DSA:1.10.10.60 148 253 1.3E-21 T 11-10-2018 BED32_03695 e2d0948d7a6f5e440983831bbe4d264c 253 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 203 245 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_08820 da46932142b4e9d874f1c38a19540954 327 Gene3D G3DSA:3.40.50.2300 41 300 4.4E-92 T 11-10-2018 BED32_08820 da46932142b4e9d874f1c38a19540954 327 Gene3D G3DSA:3.40.50.2300 130 267 4.4E-92 T 11-10-2018 BED32_08820 da46932142b4e9d874f1c38a19540954 327 SUPERFAMILY SSF53822 29 325 1.2E-64 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08820 da46932142b4e9d874f1c38a19540954 327 Pfam PF13407 Periplasmic binding protein domain 37 288 7.1E-52 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_09450 d1365466a6272d0a6aa81ea3b37f92c9 400 Pfam PF00872 Transposase, Mutator family 10 373 1.1E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_15160 4c2d872b0df5c95e80ceacb1c0561028 447 Pfam PF00324 Amino acid permease 18 367 5.5E-36 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BED32_15160 4c2d872b0df5c95e80ceacb1c0561028 447 Gene3D G3DSA:1.20.1740.10 6 436 1.4E-75 T 11-10-2018 BED32_15160 4c2d872b0df5c95e80ceacb1c0561028 447 PIRSF PIRSF006060 3 442 4.8E-68 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 Gene3D G3DSA:1.10.10.10 1 94 2.0E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 SUPERFAMILY SSF53335 99 340 2.82E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 PIRSF PIRSF005739 1 343 1.3E-44 T 11-10-2018 IPR016461 O-methyltransferase COMT-type GO:0008168 BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 Pfam PF00891 O-methyltransferase 111 321 1.6E-35 T 11-10-2018 IPR001077 O-methyltransferase, family 2 GO:0008171 BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 SUPERFAMILY SSF46785 9 99 2.12E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14280 d5861d188e08e5c2b7b02a9b912987fd 343 Gene3D G3DSA:3.40.50.150 95 343 1.8E-60 T 11-10-2018 BED32_19425 67ed17228858c914fc59ef621bd4149a 216 SUPERFAMILY SSF51735 1 207 1.22E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_19425 67ed17228858c914fc59ef621bd4149a 216 Pfam PF13460 NAD(P)H-binding 28 195 6.8E-35 T 11-10-2018 IPR016040 NAD(P)-binding domain BED32_19425 67ed17228858c914fc59ef621bd4149a 216 Gene3D G3DSA:3.40.50.720 1 208 2.4E-37 T 11-10-2018 BED32_08260 f81755dd014a6332b7287e4d67fcf0f8 213 SMART SM00903 26 178 4.8E-15 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BED32_08260 f81755dd014a6332b7287e4d67fcf0f8 213 SUPERFAMILY SSF50475 5 199 1.62E-46 T 11-10-2018 BED32_08260 f81755dd014a6332b7287e4d67fcf0f8 213 Gene3D G3DSA:2.30.110.10 15 211 2.1E-55 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BED32_08260 f81755dd014a6332b7287e4d67fcf0f8 213 Pfam PF01613 Flavin reductase like domain 28 168 1.7E-17 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 BED32_21125 20516ebdbbb64ed917c74b7e29edd937 276 Pfam PF00753 Metallo-beta-lactamase superfamily 19 79 1.2E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_21125 20516ebdbbb64ed917c74b7e29edd937 276 SMART SM00849 21 249 4.9E-4 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_21125 20516ebdbbb64ed917c74b7e29edd937 276 Gene3D G3DSA:3.60.15.10 1 273 3.7E-71 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_21125 20516ebdbbb64ed917c74b7e29edd937 276 SUPERFAMILY SSF56281 4 266 1.44E-31 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 Gene3D G3DSA:1.10.287.950 216 518 5.7E-88 T 11-10-2018 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 SUPERFAMILY SSF58104 240 523 1.83E-69 T 11-10-2018 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 SMART SM00283 269 516 6.8E-89 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 2.6E-61 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 2.6E-61 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 2.6E-61 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 2.6E-61 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 2.6E-61 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 Pfam PF02203 Tar ligand binding domain homologue 4 174 3.7E-11 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 ProSitePatterns PS00538 Bacterial chemotaxis sensory transducers signature. 294 316 - T 11-10-2018 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site BED32_07600 b4186577e8ed5838f214617cacc2ade7 552 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 484 1.4E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 6.7E-107 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.77 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 327 3.4E-117 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 SUPERFAMILY SSF46589 14 99 8.37E-22 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 6.5E-25 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 Gene3D G3DSA:3.30.930.10 8 327 1.9E-124 T 11-10-2018 BED32_10660 ef38ec8ad881d8ce2fdfde588c00fe9c 327 SUPERFAMILY SSF55681 92 327 6.56E-82 T 11-10-2018 BED32_02365 1c1c7e6360d9ce59961caf3d72a63d38 512 Gene3D G3DSA:3.40.50.1820 94 367 9.1E-18 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_02365 1c1c7e6360d9ce59961caf3d72a63d38 512 SUPERFAMILY SSF53474 195 352 2.02E-8 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_02365 1c1c7e6360d9ce59961caf3d72a63d38 512 PIRSF PIRSF014728 3 491 9.5E-192 T 11-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type BED32_02365 1c1c7e6360d9ce59961caf3d72a63d38 512 Pfam PF10142 PhoPQ-activated pathogenicity-related protein 40 414 1.2E-131 T 11-10-2018 IPR009199 PhoPQ-activated pathogenicity-related protein, PqaA type BED32_21280 b70146147376a0316aed8ce0dc358a17 217 Pfam PF01926 50S ribosome-binding GTPase 30 148 6.9E-20 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 BED32_21280 b70146147376a0316aed8ce0dc358a17 217 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 12 195 6.2E-73 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BED32_21280 b70146147376a0316aed8ce0dc358a17 217 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 16 199 27.369 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 BED32_21280 b70146147376a0316aed8ce0dc358a17 217 Gene3D G3DSA:3.40.50.300 3 205 2.3E-58 T 11-10-2018 BED32_21280 b70146147376a0316aed8ce0dc358a17 217 SUPERFAMILY SSF52540 19 209 4.98E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 Pfam PF09339 IclR helix-turn-helix domain 15 65 4.5E-14 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 Pfam PF01614 Bacterial transcriptional regulator 129 254 4.0E-41 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 Gene3D G3DSA:3.30.450.40 85 263 5.5E-66 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 SUPERFAMILY SSF46785 13 86 8.84E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 SUPERFAMILY SSF55781 77 259 1.9E-53 T 11-10-2018 BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 SMART SM00346 13 102 1.4E-36 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 BED32_10465 4fb08b3de00a9ed711ced37180cb4761 263 Gene3D G3DSA:1.10.10.10 6 82 2.3E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15675 4086aca5443e9b0b4826e57b06cbcb4a 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 11 404 3.1E-126 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BED32_15675 4086aca5443e9b0b4826e57b06cbcb4a 429 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 329 349 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 BED32_15675 4086aca5443e9b0b4826e57b06cbcb4a 429 Pfam PF00860 Permease family 16 382 6.2E-104 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 4 472 2.9E-241 T 11-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 414 434 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 36 432 1.4E-108 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 Pfam PF00474 Sodium:solute symporter family 36 432 2.0E-131 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 BED32_02420 f7a4f5046445e407329a4106d7cc62cd 484 Gene3D G3DSA:1.20.1730.10 25 481 3.4E-84 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily BED32_20060 8e2e95ade9f0acf15b445107abfa8a42 284 Gene3D G3DSA:3.40.50.1820 33 272 6.9E-73 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_20060 8e2e95ade9f0acf15b445107abfa8a42 284 SUPERFAMILY SSF53474 37 272 4.69E-48 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_20060 8e2e95ade9f0acf15b445107abfa8a42 284 Pfam PF01738 Dienelactone hydrolase family 50 272 3.0E-71 T 11-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 BED32_02935 a433af6a2ce605af5ace5570814910d4 181 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 5 165 24.924 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BED32_02935 a433af6a2ce605af5ace5570814910d4 181 Gene3D G3DSA:2.60.450.10 25 162 7.5E-49 T 11-10-2018 BED32_02935 a433af6a2ce605af5ace5570814910d4 181 Pfam PF03968 OstA-like protein 36 146 2.8E-27 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal BED32_02935 a433af6a2ce605af5ace5570814910d4 181 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 25 164 1.1E-46 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 BED32_02880 b1cae47fbc4929774ac6e4d7d28273f2 309 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 306 3.1E-90 T 11-10-2018 IPR007296 Domain of unknown function DUF403 BED32_10490 a0189e682f0bba5c0c60b52ec401f4b4 232 Gene3D G3DSA:2.40.160.40 21 232 7.3E-76 T 11-10-2018 BED32_10490 a0189e682f0bba5c0c60b52ec401f4b4 232 Pfam PF06178 Oligogalacturonate-specific porin protein (KdgM) 15 232 2.2E-76 T 11-10-2018 IPR009331 Oligogalacturonate-specific porin BED32_10490 a0189e682f0bba5c0c60b52ec401f4b4 232 SUPERFAMILY SSF56935 50 232 1.14E-14 T 11-10-2018 BED32_05900 d3eca82c69591c02b9460cfb1e6893a3 200 SUPERFAMILY SSF52833 1 194 3.86E-63 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_05900 d3eca82c69591c02b9460cfb1e6893a3 200 PIRSF PIRSF000239 1 199 1.3E-57 T 11-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_05900 d3eca82c69591c02b9460cfb1e6893a3 200 Gene3D G3DSA:3.40.30.10 1 198 5.9E-70 T 11-10-2018 BED32_05900 d3eca82c69591c02b9460cfb1e6893a3 200 Pfam PF00578 AhpC/TSA family 5 139 1.6E-33 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_05900 d3eca82c69591c02b9460cfb1e6893a3 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 2.2E-10 T 11-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_13610 5faacd5a8b257b6958f745ba305efea5 297 Gene3D G3DSA:3.90.1200.10 105 293 1.1E-10 T 11-10-2018 BED32_13610 5faacd5a8b257b6958f745ba305efea5 297 SUPERFAMILY SSF56112 14 268 2.6E-18 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily BED32_13610 5faacd5a8b257b6958f745ba305efea5 297 Pfam PF03881 Fructosamine kinase 29 276 9.7E-10 T 11-10-2018 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 Gene3D G3DSA:2.40.30.10 1 96 3.2E-30 T 11-10-2018 BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 SUPERFAMILY SSF52343 104 248 3.93E-39 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 Pfam PF00970 Oxidoreductase FAD-binding domain 19 90 1.2E-7 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 Gene3D G3DSA:3.40.50.80 97 248 1.3E-42 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 Pfam PF00175 Oxidoreductase NAD-binding domain 111 222 3.3E-18 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 BED32_20830 12470d4002f16b65b62a81944ebc7daa 248 SUPERFAMILY SSF63380 3 99 2.33E-23 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel BED32_14800 866044532b66554c7d6cf785f054efe4 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 2.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14800 866044532b66554c7d6cf785f054efe4 485 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 2.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14800 866044532b66554c7d6cf785f054efe4 485 SMART SM00345 17 76 2.6E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14800 866044532b66554c7d6cf785f054efe4 485 SUPERFAMILY SSF53383 96 480 4.26E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_14800 866044532b66554c7d6cf785f054efe4 485 SUPERFAMILY SSF46785 6 80 2.72E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_14800 866044532b66554c7d6cf785f054efe4 485 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 9.5E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_14800 866044532b66554c7d6cf785f054efe4 485 Gene3D G3DSA:1.10.10.10 4 77 6.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_14800 866044532b66554c7d6cf785f054efe4 485 Gene3D G3DSA:3.40.640.10 153 371 3.0E-112 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_14800 866044532b66554c7d6cf785f054efe4 485 Gene3D G3DSA:3.90.1150.10 116 478 3.0E-112 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_14800 866044532b66554c7d6cf785f054efe4 485 Pfam PF00155 Aminotransferase class I and II 145 474 4.0E-29 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 Gene3D G3DSA:3.40.640.10 34 259 3.2E-114 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 SUPERFAMILY SSF53383 3 353 2.61E-74 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 351 1.1E-100 T 11-10-2018 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443 BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 Gene3D G3DSA:3.90.1150.10 22 350 3.2E-114 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 Pfam PF00155 Aminotransferase class I and II 21 349 2.0E-37 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_08830 2cf8a5c827c237984a838182cc22a6f9 357 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 210 223 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 SUPERFAMILY SSF53383 72 344 1.21E-42 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 Pfam PF12390 Selenocysteine synthase N terminal 9 48 3.5E-8 T 11-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 10 456 1.6E-180 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 Gene3D G3DSA:3.90.1150.110 11 452 1.5E-152 T 11-10-2018 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 Pfam PF03841 L-seryl-tRNA selenium transferase 82 450 1.3E-167 T 11-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 Gene3D G3DSA:3.40.640.10 94 358 1.5E-152 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_20650 3ecdc8303ac9b87cf8a78a5a08bb73b2 462 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 462 242.08 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 BED32_10870 c612f1d2f15768aa6256cc8e3a968774 383 Gene3D G3DSA:3.40.50.150 117 376 4.8E-100 T 11-10-2018 BED32_10870 c612f1d2f15768aa6256cc8e3a968774 383 SUPERFAMILY SSF53335 117 370 9.81E-78 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_10870 c612f1d2f15768aa6256cc8e3a968774 383 PIRSF PIRSF003085 5 378 1.2E-125 T 11-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 BED32_10870 c612f1d2f15768aa6256cc8e3a968774 383 Pfam PF02353 Mycolic acid cyclopropane synthetase 108 368 1.8E-102 T 11-10-2018 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 SUPERFAMILY SSF50447 3 73 1.84E-12 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 Gene3D G3DSA:3.30.980.10 84 158 4.8E-6 T 11-10-2018 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 Gene3D G3DSA:3.30.980.10 159 207 1.3E-6 T 11-10-2018 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 165 198 2.7E-4 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 Gene3D G3DSA:2.40.30.130 1 78 1.4E-16 T 11-10-2018 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 SUPERFAMILY SSF55186 84 202 1.01E-23 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 BED32_12410 638e28e26502061b8cf46f2dc8ee9f56 208 Pfam PF01411 tRNA synthetases class II (A) 23 65 2.2E-5 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 BED32_10685 b08699baba9f61ff5a17b41bfbb41715 335 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 7 333 32.938 T 11-10-2018 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 BED32_10685 b08699baba9f61ff5a17b41bfbb41715 335 Gene3D G3DSA:1.10.3470.10 8 332 6.6E-107 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10685 b08699baba9f61ff5a17b41bfbb41715 335 Pfam PF01032 FecCD transport family 28 330 2.0E-83 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_10685 b08699baba9f61ff5a17b41bfbb41715 335 SUPERFAMILY SSF81345 14 330 3.92E-79 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_04710 2379780397f3b61240ddc08bdd636d41 221 Pfam PF01323 DSBA-like thioredoxin domain 102 194 3.2E-7 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BED32_04710 2379780397f3b61240ddc08bdd636d41 221 Gene3D G3DSA:3.40.30.10 27 215 9.5E-23 T 11-10-2018 BED32_04710 2379780397f3b61240ddc08bdd636d41 221 SUPERFAMILY SSF52833 52 198 4.75E-20 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 SUPERFAMILY SSF55658 1 57 4.01E-19 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 Gene3D G3DSA:3.10.430.100 61 149 2.1E-30 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 45 5.5E-22 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 Gene3D G3DSA:3.40.5.10 1 50 5.1E-25 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.154 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 1.1E-58 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 4.5E-25 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal BED32_19135 bd1ca8afd26b240cc322b32ea80106d0 150 SUPERFAMILY SSF55653 61 149 2.88E-25 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily BED32_02350 b246c8457333a963778640b4cca94cf4 369 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 176 362 1.3E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_02350 b246c8457333a963778640b4cca94cf4 369 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 158 254 4.4E-20 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_02350 b246c8457333a963778640b4cca94cf4 369 Gene3D G3DSA:1.10.3720.10 146 366 3.5E-44 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02350 b246c8457333a963778640b4cca94cf4 369 SUPERFAMILY SSF161098 156 354 3.27E-36 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07865 ec04d0344a91241efbf744548966c9b9 242 Pfam PF04973 Nicotinamide mononucleotide transporter 23 227 8.7E-54 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BED32_07865 ec04d0344a91241efbf744548966c9b9 242 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 22 229 4.4E-63 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 SUPERFAMILY SSF53335 3 272 1.13E-57 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 Pfam PF13847 Methyltransferase domain 111 249 5.0E-22 T 11-10-2018 IPR025714 Methyltransferase domain BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 Gene3D G3DSA:1.10.8.10 1 84 8.9E-25 T 11-10-2018 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 274 44.033 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 Gene3D G3DSA:3.40.50.150 87 275 4.2E-61 T 11-10-2018 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 23 270 2.4E-90 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 BED32_09820 06b527ee3bf84784b01cfebd27fd64ae 284 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 1 275 1.2E-88 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 BED32_07950 a1e2865d303a88f4a5205e43aa2f00cb 231 Gene3D G3DSA:1.10.3720.10 2 225 6.8E-65 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07950 a1e2865d303a88f4a5205e43aa2f00cb 231 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 220 5.1E-76 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 BED32_07950 a1e2865d303a88f4a5205e43aa2f00cb 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 26 227 2.0E-24 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_07950 a1e2865d303a88f4a5205e43aa2f00cb 231 SUPERFAMILY SSF161098 5 219 2.75E-52 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 Gene3D G3DSA:1.20.1050.10 85 201 5.3E-40 T 11-10-2018 BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 SUPERFAMILY SSF47616 72 202 1.34E-24 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 194 1.6E-6 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 74 8.8E-15 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 Gene3D G3DSA:3.40.30.10 1 83 2.8E-34 T 11-10-2018 BED32_14010 0555d8e72c89623a5e21eb2bd97802e3 206 SUPERFAMILY SSF52833 1 83 1.12E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_03235 e869e35bf433ad929cac344011b73961 260 SMART SM00345 13 72 3.3E-25 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_03235 e869e35bf433ad929cac344011b73961 260 SUPERFAMILY SSF46785 2 76 2.27E-22 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_03235 e869e35bf433ad929cac344011b73961 260 Pfam PF07729 FCD domain 96 219 6.4E-17 T 11-10-2018 IPR011711 GntR, C-terminal BED32_03235 e869e35bf433ad929cac344011b73961 260 SMART SM00895 96 220 2.8E-14 T 11-10-2018 IPR011711 GntR, C-terminal BED32_03235 e869e35bf433ad929cac344011b73961 260 SUPERFAMILY SSF48008 94 227 8.11E-20 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_03235 e869e35bf433ad929cac344011b73961 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_03235 e869e35bf433ad929cac344011b73961 260 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.4E-8 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_03235 e869e35bf433ad929cac344011b73961 260 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 72 1.2E-22 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_03235 e869e35bf433ad929cac344011b73961 260 Gene3D G3DSA:1.10.10.10 3 82 2.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_03235 e869e35bf433ad929cac344011b73961 260 Gene3D G3DSA:1.20.120.530 95 232 2.8E-19 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.1E-89 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 637 1.6E-131 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 1.1E-282 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 5.6E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14970 8fb3b2504a7ea090d1b530b4614e0f78 655 Pfam PF01578 Cytochrome C assembly protein 89 296 1.9E-54 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 Pfam PF02082 Transcriptional regulator 1 83 2.4E-27 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 2.7E-47 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 3.8E-67 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 164 52.162 T 11-10-2018 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 Gene3D G3DSA:1.10.10.10 1 144 3.2E-56 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16075 66782d9d56271dad4baed78b29c0e8df 164 SUPERFAMILY SSF46785 2 133 9.79E-37 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_06225 0d7fb9081e15f03e37c8f1e95e3ccdf9 121 Pfam PF10941 Protein of unknown function DUF2620 3 115 3.5E-41 T 11-10-2018 IPR021238 Protein of unknown function DUF2620 BED32_02715 bbb69a11a16e8391593f99c669da3a83 658 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 48 386 3.2E-13 T 11-10-2018 IPR010090 Phage tail tape measure protein BED32_02715 bbb69a11a16e8391593f99c669da3a83 658 Pfam PF10145 Phage-related minor tail protein 86 284 4.0E-19 T 11-10-2018 IPR010090 Phage tail tape measure protein BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 Gene3D G3DSA:3.30.540.10 1 140 5.2E-52 T 11-10-2018 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 SUPERFAMILY SSF56655 1 257 1.31E-84 T 11-10-2018 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 Pfam PF00459 Inositol monophosphatase family 2 259 3.7E-70 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 3.5E-59 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.0E-37 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 2.0E-37 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 2.0E-37 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 2.0E-37 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 BED32_16085 69a042c8bedd60a3f1470c3d9fe5dda9 268 Gene3D G3DSA:3.40.190.80 142 268 1.3E-38 T 11-10-2018 BED32_20005 8e80229d46640573023f783007dd9550 259 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 9 226 3.8E-78 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 ProSitePatterns PS01218 TatC family signature. 154 173 - T 11-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site BED32_20005 8e80229d46640573023f783007dd9550 259 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 7 241 15.886 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 85 103 1.2E-49 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 103 129 1.2E-49 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 8 35 1.2E-49 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 154 182 1.2E-49 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_20005 8e80229d46640573023f783007dd9550 259 Pfam PF00902 Sec-independent protein translocase protein (TatC) 12 221 1.1E-63 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 SUPERFAMILY SSF55194 1 172 2.75E-67 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 TIGRFAM TIGR00496 frr: ribosome recycling factor 1 173 1.2E-77 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 Pfam PF01765 Ribosome recycling factor 8 171 2.6E-62 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 Gene3D G3DSA:3.30.1360.40 19 93 1.0E-68 T 11-10-2018 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 Hamap MF_00040 Ribosome-recycling factor [frr]. 1 173 25.047 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 BED32_16875 fd525709a2fad9752b307f995af84bdf 173 Gene3D G3DSA:1.10.132.20 1 170 1.0E-68 T 11-10-2018 BED32_20665 93fe30b790dd2391f6286dd835775828 321 Pfam PF09163 Formate dehydrogenase N, transmembrane 248 290 1.3E-22 T 11-10-2018 IPR015246 Formate dehydrogenase, transmembrane BED32_20665 93fe30b790dd2391f6286dd835775828 321 PIRSF PIRSF036298 1 317 1.5E-165 T 11-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 BED32_20665 93fe30b790dd2391f6286dd835775828 321 Gene3D G3DSA:1.20.5.480 249 295 7.2E-26 T 11-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily BED32_20665 93fe30b790dd2391f6286dd835775828 321 Pfam PF13247 4Fe-4S dicluster domain 94 190 8.7E-25 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_20665 93fe30b790dd2391f6286dd835775828 321 Gene3D G3DSA:3.30.70.20 18 164 1.2E-100 T 11-10-2018 BED32_20665 93fe30b790dd2391f6286dd835775828 321 SUPERFAMILY SSF54862 28 275 9.73E-70 T 11-10-2018 BED32_20665 93fe30b790dd2391f6286dd835775828 321 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 7 291 2.2E-140 T 11-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 BED32_20665 93fe30b790dd2391f6286dd835775828 321 Gene3D G3DSA:3.30.70.20 28 229 1.2E-100 T 11-10-2018 BED32_20665 93fe30b790dd2391f6286dd835775828 321 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 135 146 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 PRINTS PR00762 Chloride channel signature 387 403 5.5E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 PRINTS PR00762 Chloride channel signature 405 424 5.5E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 PRINTS PR00762 Chloride channel signature 102 119 5.5E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 PRINTS PR00762 Chloride channel signature 352 372 5.5E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 PRINTS PR00762 Chloride channel signature 183 202 5.5E-28 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 SUPERFAMILY SSF81340 25 453 5.23E-110 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 Pfam PF00654 Voltage gated chloride channel 89 437 7.9E-91 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 BED32_17590 cf57bee002d6cc17e830bc9de35649f6 477 Gene3D G3DSA:1.10.3080.10 31 473 2.9E-154 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 BED32_12100 2d6b3b0c52efe944039faece6b29d25f 306 Gene3D G3DSA:1.10.3720.10 85 301 3.9E-20 T 11-10-2018 IPR035906 MetI-like superfamily BED32_12100 2d6b3b0c52efe944039faece6b29d25f 306 SUPERFAMILY SSF161098 92 291 3.6E-20 T 11-10-2018 IPR035906 MetI-like superfamily BED32_12100 2d6b3b0c52efe944039faece6b29d25f 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 3.3E-38 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_06005 2ebe1c42deeda15fdded682fab23a9af 196 SUPERFAMILY SSF52317 5 189 3.82E-47 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_06005 2ebe1c42deeda15fdded682fab23a9af 196 Pfam PF01965 DJ-1/PfpI family 4 169 8.7E-45 T 11-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 BED32_06005 2ebe1c42deeda15fdded682fab23a9af 196 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 5 182 4.2E-65 T 11-10-2018 IPR006287 Protein/nucleic acid deglycase DJ-1 Reactome: R-HSA-3899300 BED32_06005 2ebe1c42deeda15fdded682fab23a9af 196 Gene3D G3DSA:3.40.50.880 1 196 3.1E-55 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_13815 bf5ea94b19074978991a5cb2ba9c31e0 295 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 133 292 6.0E-73 T 11-10-2018 IPR005642 Lysine exporter LysO BED32_13815 bf5ea94b19074978991a5cb2ba9c31e0 295 Pfam PF03956 Lysine exporter LysO 109 293 2.0E-56 T 11-10-2018 IPR005642 Lysine exporter LysO BED32_09600 9303b40d844d5fa86cb891f4a0bf46e7 99 SUPERFAMILY SSF101498 2 91 4.97E-13 T 11-10-2018 IPR035890 Anti-sigma-28 factor FlgM superfamily BED32_09600 9303b40d844d5fa86cb891f4a0bf46e7 99 Pfam PF04316 Anti-sigma-28 factor, FlgM 42 90 2.5E-10 T 11-10-2018 IPR031316 Anti-sigma-28 factor FlgM, C-terminal BED32_09600 9303b40d844d5fa86cb891f4a0bf46e7 99 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 1 92 7.4E-19 T 11-10-2018 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 224 235 - T 11-10-2018 IPR023827 Peptidase S8, subtilisin, Asp-active site BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 Gene3D G3DSA:3.40.50.200 180 539 1.0E-74 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 466 482 1.5E-13 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 219 238 1.5E-13 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 PRINTS PR00723 Subtilisin serine protease family (S8) signature 263 276 1.5E-13 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 467 477 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 Pfam PF00082 Subtilase family 219 524 5.9E-31 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 BED32_09570 57a10a8ac28af60de5fdc9becf59b5bb 547 SUPERFAMILY SSF52743 208 537 7.33E-62 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 BED32_00310 5e84be27b1964101b9da1c3954e307ec 208 Pfam PF06578 YOP proteins translocation protein K (YscK) 4 208 1.9E-91 T 11-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 BED32_00310 5e84be27b1964101b9da1c3954e307ec 208 ProDom PD023059 PLASMID TYPE PROTEINS YOP III YSCK VIRULENCE K TRANSLOCATION PSCK 5 206 1.0E-96 T 11-10-2018 IPR009510 Type III secretion system, secretion protein K GO:0009405 BED32_15600 c7985c39cbbeac764ffa778f4bc4b122 211 Pfam PF02230 Phospholipase/Carboxylesterase 7 205 2.5E-32 T 11-10-2018 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 BED32_15600 c7985c39cbbeac764ffa778f4bc4b122 211 SUPERFAMILY SSF53474 8 204 6.84E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_15600 c7985c39cbbeac764ffa778f4bc4b122 211 Gene3D G3DSA:3.40.50.1820 1 206 2.3E-36 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_15405 d247773326d79bf3c1b3e9985e1273c3 342 SUPERFAMILY SSF53850 29 336 1.51E-81 T 11-10-2018 BED32_15405 d247773326d79bf3c1b3e9985e1273c3 342 Gene3D G3DSA:3.40.190.10 124 335 4.3E-120 T 11-10-2018 BED32_15405 d247773326d79bf3c1b3e9985e1273c3 342 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 25 336 9.9E-156 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BED32_15405 d247773326d79bf3c1b3e9985e1273c3 342 Gene3D G3DSA:3.40.190.10 36 305 4.3E-120 T 11-10-2018 BED32_15405 d247773326d79bf3c1b3e9985e1273c3 342 Pfam PF13531 Bacterial extracellular solute-binding protein 43 290 2.8E-42 T 11-10-2018 BED32_15095 216237a537e44e0ebfe42d7e23f63466 485 Gene3D G3DSA:3.30.1360.60 1 78 4.2E-24 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_15095 216237a537e44e0ebfe42d7e23f63466 485 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_15095 216237a537e44e0ebfe42d7e23f63466 485 Pfam PF00367 phosphotransferase system, EIIB 10 43 5.0E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 BED32_15095 216237a537e44e0ebfe42d7e23f63466 485 SUPERFAMILY SSF55604 9 82 9.81E-22 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 BED32_15095 216237a537e44e0ebfe42d7e23f63466 485 Pfam PF02378 Phosphotransferase system, EIIC 114 397 2.4E-40 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 13 300 7.1E-109 T 11-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 12 95 1.1E-21 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 SUPERFAMILY SSF47823 10 102 4.9E-11 T 11-10-2018 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 10 298 56.94 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD BED32_20340 6e1e7255a2744df43f24182728bf7516 303 Gene3D G3DSA:1.10.150.130 9 103 4.3E-20 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_20340 6e1e7255a2744df43f24182728bf7516 303 Gene3D G3DSA:1.10.443.10 116 292 2.8E-58 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 SUPERFAMILY SSF56349 113 296 1.77E-53 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_20340 6e1e7255a2744df43f24182728bf7516 303 Pfam PF00589 Phage integrase family 117 284 8.1E-52 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 PIRSF PIRSF001394 30 548 1.1E-213 T 11-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 Pfam PF05683 Fumarase C-terminus 332 537 4.2E-89 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 Gene3D G3DSA:3.20.130.10 347 537 1.8E-57 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 ProSitePatterns PS00163 Fumarate lyases signature. 456 465 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 372 536 1.4E-56 T 11-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 Pfam PF05681 Fumarate hydratase (Fumerase) 52 326 2.1E-78 T 11-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 BED32_01285 5b7d9b78c6e2e304defd0063f89dbf14 548 SUPERFAMILY SSF117457 361 536 3.53E-59 T 11-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 BED32_11345 7b2198e833dcfd2e4f3af5b49e4bc5cf 264 Gene3D G3DSA:2.30.260.10 146 260 8.7E-42 T 11-10-2018 BED32_11345 7b2198e833dcfd2e4f3af5b49e4bc5cf 264 SUPERFAMILY SSF54001 28 264 5.1E-75 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_11345 7b2198e833dcfd2e4f3af5b49e4bc5cf 264 Pfam PF07313 Protein of unknown function (DUF1460) 59 256 6.9E-74 T 11-10-2018 IPR010846 Protein of unknown function DUF1460 BED32_11345 7b2198e833dcfd2e4f3af5b49e4bc5cf 264 Gene3D G3DSA:1.10.3670.10 63 180 8.7E-42 T 11-10-2018 BED32_16130 30be1852fe4a856a4b4d2acff08ab848 389 Gene3D G3DSA:2.40.37.30 8 385 4.5E-144 T 11-10-2018 BED32_16130 30be1852fe4a856a4b4d2acff08ab848 389 Pfam PF01168 Alanine racemase, N-terminal domain 33 269 2.7E-19 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 BED32_16130 30be1852fe4a856a4b4d2acff08ab848 389 SUPERFAMILY SSF51419 34 273 2.24E-20 T 11-10-2018 IPR029066 PLP-binding barrel BED32_16130 30be1852fe4a856a4b4d2acff08ab848 389 Gene3D G3DSA:3.20.20.10 104 256 4.5E-144 T 11-10-2018 IPR029066 PLP-binding barrel BED32_15955 2ffa74939c0dcd095ae45815a7fa0c3e 339 Pfam PF01548 Transposase 6 146 6.2E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_15955 2ffa74939c0dcd095ae45815a7fa0c3e 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.2E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_09115 a64b77cfe019d6fffd7ee7e48618fa2b 159 SUPERFAMILY SSF160719 72 144 1.29E-11 T 11-10-2018 BED32_09115 a64b77cfe019d6fffd7ee7e48618fa2b 159 Pfam PF04965 Gene 25-like lysozyme 36 136 1.6E-17 T 11-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 3.7E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 Pfam PF13411 MerR HTH family regulatory protein 3 69 4.2E-21 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 SUPERFAMILY SSF46955 2 121 1.1E-34 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 131 5.0E-69 T 11-10-2018 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 SMART SM00422 2 71 3.0E-32 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_02015 2bb5941a555f02a1442bce7805fbf8f3 141 Gene3D G3DSA:1.10.1660.10 1 129 2.5E-37 T 11-10-2018 BED32_07145 c94960b2f0f23ef092d8f6c67f990e99 258 Pfam PF03374 Phage antirepressor protein KilAC domain 147 251 2.1E-30 T 11-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 BED32_07145 c94960b2f0f23ef092d8f6c67f990e99 258 Pfam PF04383 KilA-N domain 17 113 1.6E-17 T 11-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding BED32_07145 c94960b2f0f23ef092d8f6c67f990e99 258 SMART SM01252 15 114 1.9E-24 T 11-10-2018 IPR018004 KilA, N-terminal/APSES-type HTH, DNA-binding BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 SMART SM00354 1 71 5.7E-26 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 Gene3D G3DSA:3.40.50.2300 56 292 1.8E-21 T 11-10-2018 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.0E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.0E-5 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 4.3E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 SUPERFAMILY SSF47413 2 59 1.59E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 SUPERFAMILY SSF53822 77 310 2.16E-19 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 Pfam PF13377 Periplasmic binding protein-like domain 161 292 5.3E-11 T 11-10-2018 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 Gene3D G3DSA:3.40.50.2300 152 278 1.8E-21 T 11-10-2018 BED32_14840 558c023cefdda591e47d5524e2ef94b3 318 Gene3D G3DSA:1.10.260.40 1 55 1.7E-20 T 11-10-2018 BED32_05060 7c2f60ae203001ef517023bbf018d18b 120 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 97 2.5E-32 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BED32_05060 7c2f60ae203001ef517023bbf018d18b 120 Gene3D G3DSA:3.30.160.100 1 107 2.7E-36 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like BED32_05060 7c2f60ae203001ef517023bbf018d18b 120 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 2.2E-21 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BED32_05060 7c2f60ae203001ef517023bbf018d18b 120 SUPERFAMILY SSF69754 3 105 8.11E-32 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like BED32_15125 5f9cba42dfafad8deac2e74a2b908875 211 SUPERFAMILY SSF159594 39 208 8.11E-44 T 11-10-2018 BED32_15125 5f9cba42dfafad8deac2e74a2b908875 211 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 41 201 7.3E-23 T 11-10-2018 IPR005586 ABC-type transport auxiliary lipoprotein component BED32_15125 5f9cba42dfafad8deac2e74a2b908875 211 Gene3D G3DSA:3.40.50.10610 30 211 1.1E-52 T 11-10-2018 BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 Pfam PF04269 Protein of unknown function, DUF440 6 107 3.1E-46 T 11-10-2018 IPR007376 dsDNA mimic, putative BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 Gene3D G3DSA:3.10.450.140 7 107 7.6E-42 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 SUPERFAMILY SSF102816 1 107 1.96E-51 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 Hamap MF_00680 UPF0263 protein YciU [yciU]. 3 107 34.604 T 11-10-2018 IPR007376 dsDNA mimic, putative BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 PIRSF PIRSF004916 1 107 1.4E-55 T 11-10-2018 IPR007376 dsDNA mimic, putative BED32_12080 17f8815fdcb97ef858665a3aaba5cb9f 107 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 5 107 6.0E-53 T 11-10-2018 IPR007376 dsDNA mimic, putative BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 7.8E-160 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.2E-35 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 1.2E-5 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_17895 b7ceaa12de7851a92805fbcd0cb523b8 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.997 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 Gene3D G3DSA:3.40.50.300 2 251 7.5E-54 T 11-10-2018 BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 2 250 44.643 T 11-10-2018 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 Pfam PF00005 ABC transporter 17 163 4.6E-17 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 SUPERFAMILY SSF52540 14 227 3.36E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10695 a10d3ceb49a3dc01781bede0a6937e8f 252 SMART SM00382 23 212 7.2E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_04495 69316f08c37004bc58c293eca401396e 413 SUPERFAMILY SSF51735 108 295 3.95E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_04495 69316f08c37004bc58c293eca401396e 413 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 1.4E-51 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 BED32_04495 69316f08c37004bc58c293eca401396e 413 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 BED32_04495 69316f08c37004bc58c293eca401396e 413 Gene3D G3DSA:3.40.50.720 14 312 5.1E-110 T 11-10-2018 BED32_04495 69316f08c37004bc58c293eca401396e 413 Gene3D G3DSA:3.40.50.720 109 297 5.1E-110 T 11-10-2018 BED32_04495 69316f08c37004bc58c293eca401396e 413 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 1.0E-37 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 BED32_04495 69316f08c37004bc58c293eca401396e 413 SUPERFAMILY SSF52283 7 135 1.49E-48 T 11-10-2018 BED32_04495 69316f08c37004bc58c293eca401396e 413 SUPERFAMILY SSF55021 338 412 1.19E-18 T 11-10-2018 BED32_04495 69316f08c37004bc58c293eca401396e 413 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_04495 69316f08c37004bc58c293eca401396e 413 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site BED32_04495 69316f08c37004bc58c293eca401396e 413 Gene3D G3DSA:3.30.70.260 328 412 1.9E-32 T 11-10-2018 BED32_04495 69316f08c37004bc58c293eca401396e 413 Pfam PF01842 ACT domain 347 404 1.4E-6 T 11-10-2018 IPR002912 ACT domain BED32_18370 6834bd16b2a5897d87409fd57b24c969 53 PIRSF PIRSF036466 1 53 1.8E-19 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BED32_18370 6834bd16b2a5897d87409fd57b24c969 53 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 53 18.495 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BED32_18370 6834bd16b2a5897d87409fd57b24c969 53 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 1.7E-13 T 11-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 BED32_05845 db0939ba7bd64fcbec48769d2c27800e 1229 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1111 1181 3.4E-15 T 11-10-2018 BED32_05845 db0939ba7bd64fcbec48769d2c27800e 1229 Gene3D G3DSA:3.40.50.300 981 1222 4.3E-27 T 11-10-2018 BED32_05845 db0939ba7bd64fcbec48769d2c27800e 1229 Pfam PF13476 AAA domain 5 280 8.3E-26 T 11-10-2018 IPR038729 Rad50/SbcC-type AAA domain BED32_05845 db0939ba7bd64fcbec48769d2c27800e 1229 SUPERFAMILY SSF52540 1 1214 2.17E-19 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05845 db0939ba7bd64fcbec48769d2c27800e 1229 Gene3D G3DSA:3.40.50.300 1 275 4.2E-46 T 11-10-2018 BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 97 4.0E-43 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 SMART SM01103 3 86 2.5E-41 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 3.5E-23 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 Gene3D G3DSA:3.30.110.60 1 97 3.1E-37 T 11-10-2018 IPR035920 YhbY-like superfamily BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 94 9.7E-39 T 11-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 BED32_18975 a4526fded23ab6095ea7f84f35d86ff4 97 SUPERFAMILY SSF75471 1 96 1.57E-31 T 11-10-2018 IPR035920 YhbY-like superfamily BED32_17820 e5317d5bea5ace8c585bb1eac54b2ef0 250 Hamap MF_01092 Cell division protein ZapD [zapD]. 7 250 32.514 T 11-10-2018 IPR009777 Cell division protein ZapD BED32_17820 e5317d5bea5ace8c585bb1eac54b2ef0 250 Gene3D G3DSA:1.10.3900.10 16 182 3.9E-82 T 11-10-2018 BED32_17820 e5317d5bea5ace8c585bb1eac54b2ef0 250 SUPERFAMILY SSF160950 6 250 1.83E-90 T 11-10-2018 IPR036268 ZapD domain superfamily BED32_17820 e5317d5bea5ace8c585bb1eac54b2ef0 250 Pfam PF07072 Cell division protein 22 228 2.8E-76 T 11-10-2018 IPR009777 Cell division protein ZapD BED32_17820 e5317d5bea5ace8c585bb1eac54b2ef0 250 Gene3D G3DSA:2.60.440.10 9 250 3.9E-82 T 11-10-2018 IPR027462 Z ring-associated protein D, C-terminal BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 3.3E-87 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 SUPERFAMILY SSF88697 2 69 1.69E-17 T 11-10-2018 IPR015947 PUA-like superfamily BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 PIRSF PIRSF015601 2 242 1.3E-54 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 SUPERFAMILY SSF75217 75 242 3.4E-51 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 Gene3D G3DSA:3.40.1280.10 74 243 2.8E-64 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 Pfam PF04452 RNA methyltransferase 20 236 6.1E-74 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 BED32_04385 da00a9c16619d981a6a11ab51e02008a 243 Gene3D G3DSA:2.40.240.20 1 73 4.1E-22 T 11-10-2018 BED32_12180 4e7dc0ec7c2beb1470952838d6de13bd 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.9E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_12180 4e7dc0ec7c2beb1470952838d6de13bd 286 SUPERFAMILY SSF46785 5 79 3.47E-14 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_12180 4e7dc0ec7c2beb1470952838d6de13bd 286 Gene3D G3DSA:1.10.10.10 3 91 6.2E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02290 9eb965e70f349f50a13563d7b10397fa 117 Pfam PF04237 YjbR 12 102 3.7E-21 T 11-10-2018 IPR007351 Uncharacterised protein YjbR BED32_02290 9eb965e70f349f50a13563d7b10397fa 117 SUPERFAMILY SSF142906 1 116 1.57E-37 T 11-10-2018 IPR038056 YjbR-like superfamily BED32_02290 9eb965e70f349f50a13563d7b10397fa 117 Gene3D G3DSA:3.90.1150.30 1 117 2.4E-42 T 11-10-2018 IPR038056 YjbR-like superfamily BED32_12625 92d75cef0391c702ccb047572b282a4a 77 Gene3D G3DSA:1.20.58.250 1 76 4.0E-36 T 11-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_12625 92d75cef0391c702ccb047572b282a4a 77 ProDom PD057609 DNA POLYMERASE THETA SUBUNIT TRANSFERASE III NUCLEOTIDYLTRANSFERASE III DNA-DIRECTED REPLICATION 4 76 2.0E-32 T 11-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_12625 92d75cef0391c702ccb047572b282a4a 77 Pfam PF06440 DNA polymerase III, theta subunit 3 71 1.6E-37 T 11-10-2018 IPR009052 DNA polymerase III-theta, bacterial GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_12625 92d75cef0391c702ccb047572b282a4a 77 SUPERFAMILY SSF46575 1 76 1.05E-34 T 11-10-2018 BED32_14380 8a5054dd085d6d0346ba954735535928 90 Pfam PF13533 Biotin-lipoyl like 46 77 8.4E-8 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain BED32_14380 8a5054dd085d6d0346ba954735535928 90 Gene3D G3DSA:2.40.50.100 38 72 3.6E-8 T 11-10-2018 BED32_14380 8a5054dd085d6d0346ba954735535928 90 Gene3D G3DSA:1.10.287.470 73 88 3.6E-8 T 11-10-2018 BED32_14380 8a5054dd085d6d0346ba954735535928 90 SUPERFAMILY SSF111369 48 87 1.83E-6 T 11-10-2018 BED32_14380 8a5054dd085d6d0346ba954735535928 90 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 9 32 3.7E-8 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_14380 8a5054dd085d6d0346ba954735535928 90 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 51 71 3.7E-8 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 BED32_10400 18f7d157285695f49517cf0ae58cb9c2 185 Pfam PF05229 Spore Coat Protein U domain 41 182 3.1E-33 T 11-10-2018 IPR007893 Spore coat protein U BED32_10400 18f7d157285695f49517cf0ae58cb9c2 185 SMART SM00972 127 182 7.6E-22 T 11-10-2018 IPR007893 Spore coat protein U BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 Gene3D G3DSA:1.25.40.10 179 345 7.3E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 Pfam PF13432 Tetratricopeptide repeat 185 243 0.0047 T 11-10-2018 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SUPERFAMILY SSF48452 37 132 2.81E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SMART SM00028 69 102 64.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SMART SM00028 107 140 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SMART SM00028 214 247 1.9 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SMART SM00028 180 213 27.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 SUPERFAMILY SSF48452 109 279 6.07E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 Gene3D G3DSA:1.25.40.10 39 178 4.3E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 36.844 T 11-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 BED32_11910 6e8a60ae0d3ea310509b8b0703e06f72 389 Pfam PF13176 Tetratricopeptide repeat 71 97 0.028 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_21830 f6dbbefae8fccb96b9f878fd09009a62 323 Pfam PF14319 Transposase zinc-binding domain 2 40 6.2E-7 T 11-10-2018 IPR026889 Transposase zinc-binding domain BED32_21830 f6dbbefae8fccb96b9f878fd09009a62 323 Pfam PF04986 Putative transposase 65 244 1.0E-44 T 11-10-2018 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 BED32_12725 66759b9c8da3c8710723df39d2eed792 759 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 742 759 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site BED32_12725 66759b9c8da3c8710723df39d2eed792 759 SUPERFAMILY SSF56935 57 759 9.89E-90 T 11-10-2018 BED32_12725 66759b9c8da3c8710723df39d2eed792 759 Pfam PF00593 TonB dependent receptor 280 757 1.7E-29 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_12725 66759b9c8da3c8710723df39d2eed792 759 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 109 759 3.4E-165 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BED32_12725 66759b9c8da3c8710723df39d2eed792 759 Pfam PF07715 TonB-dependent Receptor Plug Domain 107 199 7.7E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_12725 66759b9c8da3c8710723df39d2eed792 759 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 73 - T 11-10-2018 IPR010916 TonB box, conserved site BED32_12725 66759b9c8da3c8710723df39d2eed792 759 Gene3D G3DSA:2.40.170.20 220 759 1.7E-72 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_12725 66759b9c8da3c8710723df39d2eed792 759 Gene3D G3DSA:2.170.130.10 102 219 9.0E-15 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_12715 e99fed5ae42edd58cf57f1d078983331 153 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 22 144 2.0E-59 T 11-10-2018 IPR009328 Protein of unknown function DUF986 BED32_12715 e99fed5ae42edd58cf57f1d078983331 153 PIRSF PIRSF020687 1 152 7.4E-71 T 11-10-2018 IPR009328 Protein of unknown function DUF986 BED32_12715 e99fed5ae42edd58cf57f1d078983331 153 Pfam PF06173 Protein of unknown function (DUF986) 4 151 1.8E-65 T 11-10-2018 IPR009328 Protein of unknown function DUF986 BED32_12715 e99fed5ae42edd58cf57f1d078983331 153 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 152 32.309 T 11-10-2018 IPR009328 Protein of unknown function DUF986 BED32_08025 eb4f31d37b9b2d20e939cbc001499453 81 SUPERFAMILY SSF54285 1 81 2.24E-22 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp BED32_08025 eb4f31d37b9b2d20e939cbc001499453 81 Gene3D G3DSA:3.10.20.30 1 81 8.2E-27 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_08025 eb4f31d37b9b2d20e939cbc001499453 81 Pfam PF02597 ThiS family 4 81 1.7E-20 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 BED32_08025 eb4f31d37b9b2d20e939cbc001499453 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.5E-24 T 11-10-2018 BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 Pfam PF00593 TonB dependent receptor 226 715 5.2E-48 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 Gene3D G3DSA:2.170.130.10 60 184 6.1E-28 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 50 - T 11-10-2018 IPR010916 TonB box, conserved site BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 Gene3D G3DSA:2.40.170.20 188 718 3.9E-113 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 718 2.5E-91 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 701 718 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 175 1.7E-19 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_18425 16f19d9b5c21a88022708cc5f254d27e 718 SUPERFAMILY SSF56935 47 718 2.98E-111 T 11-10-2018 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 SUPERFAMILY SSF50249 3 69 1.49E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 SMART SM00357 6 70 3.3E-31 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 43 61 6.3E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 7 22 6.3E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 PRINTS PR00050 Cold shock protein signature 28 37 6.3E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 Gene3D G3DSA:2.40.50.140 2 69 4.4E-29 T 11-10-2018 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 1.9E-32 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_16545 2a87be951f9f5e5360ee4d71855f0ca3 70 PIRSF PIRSF002599 1 70 2.1E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 Gene3D G3DSA:1.10.275.10 6 142 6.8E-59 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00145 Argininosuccinate lyase family signature 178 198 3.9E-5 T 11-10-2018 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00145 Argininosuccinate lyase family signature 137 159 3.9E-5 T 11-10-2018 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00145 Argininosuccinate lyase family signature 320 336 3.9E-5 T 11-10-2018 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 SUPERFAMILY SSF48557 2 458 3.68E-142 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 Pfam PF00206 Lyase 13 345 3.9E-108 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00149 Fumarate lyase superfamily signature 274 301 3.1E-27 T 11-10-2018 IPR000362 Fumarate lyase family BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00149 Fumarate lyase superfamily signature 320 336 3.1E-27 T 11-10-2018 IPR000362 Fumarate lyase family BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00149 Fumarate lyase superfamily signature 138 156 3.1E-27 T 11-10-2018 IPR000362 Fumarate lyase family BED32_19360 25c454e573dcc8728b6ac6d025271328 478 PRINTS PR00149 Fumarate lyase superfamily signature 183 201 3.1E-27 T 11-10-2018 IPR000362 Fumarate lyase family BED32_19360 25c454e573dcc8728b6ac6d025271328 478 Gene3D G3DSA:1.20.200.10 143 410 2.6E-114 T 11-10-2018 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 6 474 1.7E-264 T 11-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 Gene3D G3DSA:1.10.40.30 411 460 2.4E-29 T 11-10-2018 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 ProSitePatterns PS00163 Fumarate lyases signature. 320 329 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 BED32_19360 25c454e573dcc8728b6ac6d025271328 478 Pfam PF10415 Fumarase C C-terminus 411 464 4.1E-17 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 BED32_14200 0a9193e3c93af40829c856610d8be5f1 104 Pfam PF13989 YejG-like protein 1 98 1.7E-44 T 11-10-2018 IPR020489 Uncharacterised protein family YejG BED32_14200 0a9193e3c93af40829c856610d8be5f1 104 ProDom PD073777 YEJG CYTOPLASMIC SIMILAR Y2914 YPO1269 STY2456 ECS3073 ESCHERICHIA COLI 1 104 2.0E-47 T 11-10-2018 IPR020489 Uncharacterised protein family YejG BED32_02010 4bc16be005d75af75fbb28b8277ca0c9 108 Pfam PF09350 Domain of unknown function (DUF1992) 7 73 9.6E-22 T 11-10-2018 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 152 5.2E-62 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 2.1E-21 T 11-10-2018 IPR020603 MraZ domain BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 Pfam PF02381 MraZ protein, putative antitoxin-like 77 142 1.5E-20 T 11-10-2018 IPR020603 MraZ domain BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 Gene3D G3DSA:2.40.330.20 1 150 2.7E-42 T 11-10-2018 IPR038619 MraZ superfamily BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 141 2.0E-76 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 56.423 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 BED32_17925 f91c12abcf3b48071d9a9059880a39fc 152 SUPERFAMILY SSF89447 1 138 6.28E-45 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily BED32_21630 3f39aaddcd122fa8ac73d19de6e5f07c 118 Gene3D G3DSA:1.10.10.10 18 113 8.6E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21630 3f39aaddcd122fa8ac73d19de6e5f07c 118 Pfam PF07180 CaiF/GrlA transcriptional regulator 19 116 9.1E-11 T 11-10-2018 IPR020357 Transcription regulator CaiF/GrlA GO:0006351 BED32_08610 9406843240b45551ee82f27824e814f9 452 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 55 438 1.2E-178 T 11-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 BED32_08610 9406843240b45551ee82f27824e814f9 452 Pfam PF03606 C4-dicarboxylate anaerobic carrier 2 448 8.2E-131 T 11-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 BED32_18580 2e779f8d17c86384179bef42c85dedce 344 Gene3D G3DSA:3.40.50.2300 34 304 2.1E-110 T 11-10-2018 BED32_18580 2e779f8d17c86384179bef42c85dedce 344 SUPERFAMILY SSF53822 31 344 5.18E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_18580 2e779f8d17c86384179bef42c85dedce 344 Pfam PF13407 Periplasmic binding protein domain 34 289 6.5E-54 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_18580 2e779f8d17c86384179bef42c85dedce 344 Gene3D G3DSA:3.40.50.2300 134 270 2.1E-110 T 11-10-2018 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 13 333 6.1E-125 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 Gene3D G3DSA:1.20.120.420 6 141 4.8E-30 T 11-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 40 334 3.1E-92 T 11-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 SUPERFAMILY SSF100950 15 339 7.44E-106 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 Gene3D G3DSA:3.40.50.10470 146 341 1.1E-64 T 11-10-2018 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 3 345 35.73 T 11-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 BED32_05615 111864160c31f1b4c8accaa1f52aa20f 346 Pfam PF01008 Initiation factor 2 subunit family 53 334 2.2E-66 T 11-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 Gene3D G3DSA:3.40.50.300 274 522 1.2E-55 T 11-10-2018 BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 Gene3D G3DSA:3.40.50.300 2 271 4.3E-55 T 11-10-2018 BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 SUPERFAMILY SSF52540 2 229 2.44E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 SUPERFAMILY SSF52540 290 515 3.34E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 Pfam PF12848 ABC transporter 216 301 4.1E-20 T 11-10-2018 IPR032781 ABC-transporter extension domain BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 Pfam PF00005 ABC transporter 328 459 7.2E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 Pfam PF00005 ABC transporter 10 176 7.8E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 SMART SM00382 18 220 2.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08355 8e0819e7138a11fbdda2e3df8e33c740 523 SMART SM00382 336 505 8.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15430 75dd72588fdd5d3c09e11489c5ac3113 211 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 7 197 5.0E-85 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 BED32_15430 75dd72588fdd5d3c09e11489c5ac3113 211 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 1 197 32.823 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 BED32_15430 75dd72588fdd5d3c09e11489c5ac3113 211 Gene3D G3DSA:3.20.20.70 1 200 4.6E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_15430 75dd72588fdd5d3c09e11489c5ac3113 211 SUPERFAMILY SSF51366 4 196 3.77E-51 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_15920 e4594d9513fe2929b833c3a66fd49219 169 Pfam PF12318 Membrane bound FAD containing D-sorbitol dehydrogenase 14 165 7.3E-38 T 11-10-2018 IPR024651 FAD-containing D-sorbitol dehydrogenase small subunit BED32_06945 16d036bb5982625eae13da42305b32bb 300 Pfam PF04492 Bacteriophage replication protein O 24 118 1.9E-31 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_06945 16d036bb5982625eae13da42305b32bb 300 Gene3D G3DSA:1.10.10.10 22 121 1.5E-34 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06945 16d036bb5982625eae13da42305b32bb 300 TIGRFAM TIGR01610 phage_O_Nterm: phage replication protein O, N-terminal domain 26 118 3.9E-30 T 11-10-2018 IPR006497 Bacteriophage lambda, GpO, N-terminal GO:0006260 BED32_00265 e30b57d21cbf399d240a42edcc0e7dea 93 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 2 83 4.7E-13 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family BED32_00265 e30b57d21cbf399d240a42edcc0e7dea 93 PIRSF PIRSF029218 1 90 1.6E-26 T 11-10-2018 IPR028344 Toxin-antitoxin system, toxin component ParE1/4 BED32_00265 e30b57d21cbf399d240a42edcc0e7dea 93 Gene3D G3DSA:3.30.2310.20 1 87 2.7E-17 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily BED32_12620 b8ad98cd35fa2fa29503ac14c052324d 169 Gene3D G3DSA:1.20.1260.10 1 169 1.0E-48 T 11-10-2018 IPR012347 Ferritin-like BED32_12620 b8ad98cd35fa2fa29503ac14c052324d 169 SUPERFAMILY SSF47240 1 159 4.28E-57 T 11-10-2018 IPR009078 Ferritin-like superfamily BED32_12620 b8ad98cd35fa2fa29503ac14c052324d 169 Pfam PF00210 Ferritin-like domain 8 143 7.7E-40 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BED32_07340 dd024e0c3967d5d36f034ed766a6a285 64 Gene3D G3DSA:1.20.58.250 12 64 8.9E-8 T 11-10-2018 IPR036745 DNA polymerase III-theta superfamily GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_07340 dd024e0c3967d5d36f034ed766a6a285 64 SUPERFAMILY SSF46575 15 60 1.57E-7 T 11-10-2018 BED32_07340 dd024e0c3967d5d36f034ed766a6a285 64 Hamap MF_00525 Surface composition regulator [glgS]. 5 64 17.808 T 11-10-2018 IPR015065 Surface composition regulator BED32_07340 dd024e0c3967d5d36f034ed766a6a285 64 Pfam PF08971 Glycogen synthesis protein 11 58 2.4E-8 T 11-10-2018 IPR015065 Surface composition regulator BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 253 1.5E-94 T 11-10-2018 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter GO:0030288|GO:0071705 BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 Gene3D G3DSA:3.40.190.10 113 213 2.2E-85 T 11-10-2018 BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 Gene3D G3DSA:3.40.190.10 29 252 2.2E-85 T 11-10-2018 BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 50 63 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 SUPERFAMILY SSF53850 4 257 6.05E-65 T 11-10-2018 BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 SMART SM00062 27 256 4.2E-72 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_14730 1e9563b3b6940f2f7b12e3d321010e56 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 254 1.0E-61 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_16350 306422c800a6c814a97a9b1245098dda 113 Gene3D G3DSA:3.30.1450.10 34 113 9.2E-31 T 11-10-2018 IPR037873 BamE-like BED32_16350 306422c800a6c814a97a9b1245098dda 113 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 4 112 32.306 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE BED32_16350 306422c800a6c814a97a9b1245098dda 113 Pfam PF04355 SmpA / OmlA family 35 104 4.5E-26 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 43 61 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 158 177 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 137 156 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 240 259 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 77 95 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 306 327 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 364 383 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 PRINTS PR00181 Maltose binding protein signature 178 197 9.0E-90 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 Gene3D G3DSA:3.40.190.10 145 395 1.3E-145 T 11-10-2018 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 Pfam PF13416 Bacterial extracellular solute-binding protein 57 350 2.3E-40 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 SUPERFAMILY SSF53850 36 401 2.42E-92 T 11-10-2018 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 ProSitePatterns PS01037 Bacterial extracellular solute-binding proteins, family 1 signature. 140 157 - T 11-10-2018 IPR006061 Solute-binding family 1, conserved site GO:0055085 BED32_02190 8d7f2a6253e5a335c5e599a382254b95 403 Gene3D G3DSA:3.40.190.10 55 364 1.3E-145 T 11-10-2018 BED32_16785 6225b3090af3c6c842f91ce5c954307d 86 Gene3D G3DSA:2.30.30.400 10 86 3.0E-32 T 11-10-2018 IPR038626 Rof-like superfamily BED32_16785 6225b3090af3c6c842f91ce5c954307d 86 Pfam PF07073 Modulator of Rho-dependent transcription termination (ROF) 9 83 2.2E-28 T 11-10-2018 IPR009778 Modulator of Rho-dependent transcription termination BED32_16785 6225b3090af3c6c842f91ce5c954307d 86 SUPERFAMILY SSF101744 1 84 1.67E-30 T 11-10-2018 IPR023534 Rof/RNase P-like Reactome: R-HSA-6784531 BED32_00665 2fc029f020ef8aefc494f2b3656e1e6e 214 Gene3D G3DSA:3.30.1150.10 45 212 2.0E-32 T 11-10-2018 BED32_00665 2fc029f020ef8aefc494f2b3656e1e6e 214 SUPERFAMILY SSF74653 113 210 5.36E-21 T 11-10-2018 BED32_00665 2fc029f020ef8aefc494f2b3656e1e6e 214 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 131 210 1.7E-23 T 11-10-2018 IPR006260 TonB/TolA, C-terminal BED32_00665 2fc029f020ef8aefc494f2b3656e1e6e 214 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 131 209 2.9E-18 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 BED32_14505 0bc51dff65205b8161114e263e5bb8de 168 SUPERFAMILY SSF143744 14 152 6.28E-26 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_14505 0bc51dff65205b8161114e263e5bb8de 168 Gene3D G3DSA:3.30.450.150 1 156 1.8E-45 T 11-10-2018 IPR038084 GlcG-like domain superfamily BED32_14505 0bc51dff65205b8161114e263e5bb8de 168 Pfam PF03928 Haem-degrading 22 147 1.2E-27 T 11-10-2018 IPR005624 Haem-degrading BED32_14505 0bc51dff65205b8161114e263e5bb8de 168 PIRSF PIRSF008757 1 164 9.6E-59 T 11-10-2018 IPR010371 Uncharacterised protein family UPF0303 BED32_14505 0bc51dff65205b8161114e263e5bb8de 168 Hamap MF_00761 UPF0303 protein . 2 155 34.035 T 11-10-2018 IPR010371 Uncharacterised protein family UPF0303 BED32_06160 6c8a0b97241d9de77daaa3d3983b0a70 287 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 13 283 3.3E-102 T 11-10-2018 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-9033241 BED32_06160 6c8a0b97241d9de77daaa3d3983b0a70 287 Pfam PF13622 Thioesterase-like superfamily 33 282 7.4E-60 T 11-10-2018 BED32_06160 6c8a0b97241d9de77daaa3d3983b0a70 287 SUPERFAMILY SSF54637 116 283 8.23E-62 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_06160 6c8a0b97241d9de77daaa3d3983b0a70 287 SUPERFAMILY SSF54637 6 114 2.28E-41 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_06160 6c8a0b97241d9de77daaa3d3983b0a70 287 Gene3D G3DSA:3.10.129.90 1 287 1.4E-115 T 11-10-2018 BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 SUPERFAMILY SSF52540 270 488 7.99E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 Gene3D G3DSA:3.40.50.300 261 494 1.4E-38 T 11-10-2018 BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 SUPERFAMILY SSF52540 8 233 4.07E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 SMART SM00382 33 223 3.5E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 SMART SM00382 284 480 1.1E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 Gene3D G3DSA:3.40.50.300 2 248 1.2E-53 T 11-10-2018 BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 Pfam PF00005 ABC transporter 275 429 2.4E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08765 34d06bf2ba02f499fccd6a29d522be94 503 Pfam PF00005 ABC transporter 24 175 8.9E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 Gene3D G3DSA:3.30.70.2810 1 80 7.3E-34 T 11-10-2018 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 Pfam PF01728 FtsJ-like methyltransferase 187 262 7.1E-7 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 PIRSF PIRSF028774 2 361 2.8E-191 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 2 356 85.027 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 Gene3D G3DSA:3.30.2300.20 81 176 8.5E-39 T 11-10-2018 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 Gene3D G3DSA:3.40.50.150 177 358 2.2E-56 T 11-10-2018 BED32_16955 e580d147d0931a089be1b0b3b354954b 368 SUPERFAMILY SSF53335 185 296 2.67E-11 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_21535 c99bea8263932ad699bfea7bc6651020 441 Pfam PF00860 Permease family 29 402 1.4E-44 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BED32_21535 c99bea8263932ad699bfea7bc6651020 441 PIRSF PIRSF005353 3 441 1.1E-175 T 11-10-2018 IPR026033 Purine permease PbuG-like BED32_01110 d93537ad0f626769a98875e473616693 329 PIRSF PIRSF035875 24 323 4.3E-22 T 11-10-2018 IPR017039 Virulence factor BrkB BED32_01110 d93537ad0f626769a98875e473616693 329 TIGRFAM TIGR00766 TIGR00766: inner membrane protein YhjD 40 313 2.0E-121 T 11-10-2018 IPR005274 Inner membrane protein YhjD BED32_01110 d93537ad0f626769a98875e473616693 329 Pfam PF03631 Virulence factor BrkB 54 312 1.0E-45 T 11-10-2018 IPR017039 Virulence factor BrkB BED32_00540 e0ff96c99a420cbcd464b431117b4720 79 Gene3D G3DSA:1.20.5.340 1 79 5.4E-33 T 11-10-2018 BED32_00540 e0ff96c99a420cbcd464b431117b4720 79 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.076 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 BED32_00540 e0ff96c99a420cbcd464b431117b4720 79 Pfam PF06005 Cell division protein ZapB 1 78 9.2E-29 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 2.3E-182 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 Gene3D G3DSA:3.65.10.10 21 231 2.1E-171 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 6 409 1.2E-125 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 Gene3D G3DSA:3.65.10.10 7 416 2.1E-171 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 44.05 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 BED32_02990 43877f3a4fa9a18f9eb2bd3f7e44b76a 422 SUPERFAMILY SSF55205 1 421 9.65E-145 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 BED32_13690 742e435f516b8306c42ddd400f22f6e4 588 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 11 404 3.7E-159 T 11-10-2018 IPR003776 YcaO-like domain BED32_13690 742e435f516b8306c42ddd400f22f6e4 588 Gene3D G3DSA:3.30.160.660 217 341 2.9E-13 T 11-10-2018 BED32_13690 742e435f516b8306c42ddd400f22f6e4 588 Gene3D G3DSA:1.10.490.140 181 395 2.9E-13 T 11-10-2018 BED32_13690 742e435f516b8306c42ddd400f22f6e4 588 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 59 391 4.1E-78 T 11-10-2018 IPR003776 YcaO-like domain BED32_00715 d106a50e77cd4e19492f0859af854b91 287 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 93 101 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 Pfam PF01177 Asp/Glu/Hydantoin racemase 31 239 2.9E-27 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 Hamap MF_00258 Glutamate racemase [murI]. 26 278 34.376 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 SUPERFAMILY SSF53681 29 129 3.86E-31 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 204 214 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 SUPERFAMILY SSF53681 131 283 8.07E-34 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 Gene3D G3DSA:3.40.50.1860 118 231 2.4E-91 T 11-10-2018 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 Gene3D G3DSA:3.40.50.1860 30 265 2.4E-91 T 11-10-2018 BED32_00715 d106a50e77cd4e19492f0859af854b91 287 TIGRFAM TIGR00067 glut_race: glutamate racemase 29 272 1.0E-84 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 BED32_16650 59d880b44d1e8416b713938445eb3dfa 239 Gene3D G3DSA:3.40.50.150 52 177 8.8E-13 T 11-10-2018 BED32_16650 59d880b44d1e8416b713938445eb3dfa 239 SUPERFAMILY SSF53335 78 184 6.46E-15 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_16650 59d880b44d1e8416b713938445eb3dfa 239 Pfam PF08241 Methyltransferase domain 77 125 3.8E-9 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BED32_10445 ca74d1d0d02f6e6d77743666eda65072 293 Pfam PF01435 Peptidase family M48 74 288 1.8E-39 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BED32_10445 ca74d1d0d02f6e6d77743666eda65072 293 Hamap MF_00188 Protease HtpX [htpX]. 1 289 26.264 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 BED32_10445 ca74d1d0d02f6e6d77743666eda65072 293 Gene3D G3DSA:3.30.2010.10 64 157 2.7E-37 T 11-10-2018 BED32_06575 5eb84a0b7e2477a0fd1089a2df655ac2 250 SUPERFAMILY SSF51306 148 242 1.05E-17 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_06575 5eb84a0b7e2477a0fd1089a2df655ac2 250 Gene3D G3DSA:2.10.109.10 126 246 5.3E-11 T 11-10-2018 BED32_06575 5eb84a0b7e2477a0fd1089a2df655ac2 250 Pfam PF00717 Peptidase S24-like 161 226 1.1E-10 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_04395 afe4c16575154c6fe2fd9b83ab3c3397 167 Pfam PF10263 SprT-like family 45 116 1.8E-13 T 11-10-2018 IPR006640 SprT-like BED32_04395 afe4c16575154c6fe2fd9b83ab3c3397 167 Hamap MF_00746 Protein SprT [sprT]. 12 162 38.888 T 11-10-2018 IPR023483 Uncharacterised protein family SprT BED32_04395 afe4c16575154c6fe2fd9b83ab3c3397 167 SMART SM00731 16 162 4.5E-60 T 11-10-2018 IPR006640 SprT-like BED32_04395 afe4c16575154c6fe2fd9b83ab3c3397 167 Pfam PF17283 SprT-like zinc ribbon domain 122 162 6.4E-10 T 11-10-2018 IPR035240 SprT-like, zinc ribbon domain BED32_13190 7f3eaee928b008b8c80fd81346c2a94d 55 Pfam PF01783 Ribosomal L32p protein family 2 54 1.1E-19 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_13190 7f3eaee928b008b8c80fd81346c2a94d 55 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 3.5E-20 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_13190 7f3eaee928b008b8c80fd81346c2a94d 55 SUPERFAMILY SSF57829 2 54 1.04E-18 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BED32_13190 7f3eaee928b008b8c80fd81346c2a94d 55 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.225 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_02510 e16baea55e515101c65a299128ca70d5 92 Gene3D G3DSA:1.10.260.40 4 88 2.6E-8 T 11-10-2018 BED32_02510 e16baea55e515101c65a299128ca70d5 92 SUPERFAMILY SSF47413 11 65 4.5E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_02510 e16baea55e515101c65a299128ca70d5 92 Pfam PF01381 Helix-turn-helix 20 50 5.5E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 TIGRFAM TIGR01321 TrpR: trp operon repressor 18 110 5.5E-35 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 Gene3D G3DSA:1.10.1270.10 15 114 1.7E-36 T 11-10-2018 IPR038116 TrpR-like superfamily BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 17 107 4.0E-36 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 PIRSF PIRSF003196 8 115 2.3E-40 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 Hamap MF_00475 Trp operon repressor [trpR]. 21 114 23.448 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 SUPERFAMILY SSF48295 12 110 2.98E-28 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_18265 dd39fa6e7436481d98160f9dc607cc2d 116 Pfam PF01371 Trp repressor protein 23 109 1.7E-28 T 11-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 BED32_15030 5175d3c832b615e321bbc50c133be9e1 894 SMART SM00778 32 68 2.8E-16 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_15030 5175d3c832b615e321bbc50c133be9e1 894 Pfam PF06048 Domain of unknown function (DUF927) 335 618 2.9E-101 T 11-10-2018 IPR009270 Domain of unknown function DUF927 BED32_15030 5175d3c832b615e321bbc50c133be9e1 894 SUPERFAMILY SSF57783 10 90 2.21E-6 T 11-10-2018 BED32_15030 5175d3c832b615e321bbc50c133be9e1 894 Pfam PF13362 Toprim domain 214 309 2.1E-10 T 11-10-2018 IPR006171 TOPRIM domain BED32_15030 5175d3c832b615e321bbc50c133be9e1 894 Pfam PF08273 Zinc-binding domain of primase-helicase 32 68 1.7E-15 T 11-10-2018 IPR013237 Bacteriophage T7, Gp4, DNA primase/helicase, N-terminal GO:0003896|GO:0004386|GO:0008270 BED32_20275 d9cfc10d8551fa46b396d2435de64a71 351 Pfam PF12146 Serine aminopeptidase, S33 54 314 1.6E-55 T 11-10-2018 IPR022742 Serine aminopeptidase, S33 BED32_20275 d9cfc10d8551fa46b396d2435de64a71 351 SUPERFAMILY SSF53474 35 329 1.13E-35 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_20275 d9cfc10d8551fa46b396d2435de64a71 351 Gene3D G3DSA:3.40.50.1820 27 337 9.7E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_05350 629ba942c99cd9982fb71d58131369ac 97 Pfam PF05269 Bacteriophage CII protein 1 90 2.2E-36 T 11-10-2018 IPR007933 Transcription activator CII GO:0003677|GO:0006355 BED32_05350 629ba942c99cd9982fb71d58131369ac 97 Gene3D G3DSA:1.10.260.40 2 82 4.9E-36 T 11-10-2018 BED32_05350 629ba942c99cd9982fb71d58131369ac 97 SUPERFAMILY SSF47413 6 78 1.03E-22 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_01215 8abe6931a5b2b2dfc46d57de938126f4 829 SUPERFAMILY SSF52540 510 686 4.11E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01215 8abe6931a5b2b2dfc46d57de938126f4 829 SMART SM00382 522 683 0.0014 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01215 8abe6931a5b2b2dfc46d57de938126f4 829 Gene3D G3DSA:3.40.50.300 509 689 1.8E-15 T 11-10-2018 BED32_01215 8abe6931a5b2b2dfc46d57de938126f4 829 Pfam PF07728 AAA domain (dynein-related subfamily) 527 676 3.1E-5 T 11-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 Pfam PF01380 SIS domain 119 246 9.2E-20 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 SUPERFAMILY SSF46689 2 67 2.51E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 Gene3D G3DSA:1.10.10.10 1 70 3.3E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 SUPERFAMILY SSF53697 85 270 2.75E-44 T 11-10-2018 BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 67 2.5E-21 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_15415 359ee0eaae500e9e2f18c7bc5bc2e697 273 Gene3D G3DSA:3.40.50.10490 89 271 1.1E-47 T 11-10-2018 BED32_15495 0783fa1e7b08a96675f0b4db7c04e55b 155 PIRSF PIRSF006105 10 155 2.5E-53 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB BED32_15495 0783fa1e7b08a96675f0b4db7c04e55b 155 Gene3D G3DSA:1.10.1130.10 68 135 9.9E-30 T 11-10-2018 BED32_15495 0783fa1e7b08a96675f0b4db7c04e55b 155 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 41 148 4.5E-46 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB BED32_15495 0783fa1e7b08a96675f0b4db7c04e55b 155 SUPERFAMILY SSF48695 54 150 3.02E-41 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily BED32_07790 5dcbea680996d7f79a129ed7fa3c38ed 379 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 379 9.8E-190 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_07790 5dcbea680996d7f79a129ed7fa3c38ed 379 PIRSF PIRSF000267 2 378 1.1E-128 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_07790 5dcbea680996d7f79a129ed7fa3c38ed 379 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 362 1.1E-109 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 Pfam PF00266 Aminotransferase class-V 10 373 1.6E-86 T 11-10-2018 IPR000192 Aminotransferase class V domain BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 6 400 54.693 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 SUPERFAMILY SSF53383 8 395 1.71E-114 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 Gene3D G3DSA:3.90.1150.10 10 381 2.9E-167 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 202 221 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 Gene3D G3DSA:3.40.640.10 21 267 2.9E-167 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 6 409 4.5E-231 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 BED32_16070 0eea29b9d7dde07ea70b1ecd0e2dce4e 409 PIRSF PIRSF005572 7 389 5.6E-138 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SMART SM00086 207 249 0.0011 T 11-10-2018 IPR001610 PAC motif BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SMART SM00086 85 127 4.8E-7 T 11-10-2018 IPR001610 PAC motif BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SMART SM00091 132 202 0.025 T 11-10-2018 IPR000014 PAS domain BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SMART SM00091 12 80 0.035 T 11-10-2018 IPR000014 PAS domain BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SUPERFAMILY SSF55785 21 124 1.74E-24 T 11-10-2018 IPR035965 PAS domain superfamily BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Pfam PF08447 PAS fold 157 243 2.1E-12 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Pfam PF08447 PAS fold 36 119 2.3E-15 T 11-10-2018 IPR013655 PAS fold-3 GO:0005515 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 132 8.2E-17 T 11-10-2018 IPR000014 PAS domain BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 139 254 4.1E-15 T 11-10-2018 IPR000014 PAS domain BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SUPERFAMILY SSF58104 233 431 1.57E-46 T 11-10-2018 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Gene3D G3DSA:1.10.287.950 240 433 2.9E-38 T 11-10-2018 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SMART SM00283 238 428 3.4E-9 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 267 431 5.5E-33 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 SUPERFAMILY SSF55785 142 246 3.49E-22 T 11-10-2018 IPR035965 PAS domain superfamily BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Gene3D G3DSA:3.30.450.20 118 239 2.0E-18 T 11-10-2018 BED32_08270 80ba7e77556c2ea381910dd4ceeb066f 434 Gene3D G3DSA:3.30.450.20 6 117 3.3E-24 T 11-10-2018 BED32_07360 8cd0f5d6b1909721b782c193893b9a78 159 Pfam PF00313 'Cold-shock' DNA-binding domain 1 61 6.6E-10 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_07360 8cd0f5d6b1909721b782c193893b9a78 159 SUPERFAMILY SSF50249 2 62 1.05E-10 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_07360 8cd0f5d6b1909721b782c193893b9a78 159 Gene3D G3DSA:2.40.50.140 1 68 5.5E-18 T 11-10-2018 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 TIGRFAM TIGR01404 FlhB_rel_III: type III secretion protein, YscU/HrpY family 6 344 1.1E-119 T 11-10-2018 IPR006307 Type III exporter system, secretion apparatus protein BsaZ GO:0009306|GO:0016021 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 Gene3D G3DSA:3.40.1690.10 214 355 2.7E-50 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_19530 4aa766b90a2b4d313799190748a2900a 358 SUPERFAMILY SSF160544 241 347 1.44E-31 T 11-10-2018 IPR029025 Type III secretion system substrate exporter, C-terminal BED32_19530 4aa766b90a2b4d313799190748a2900a 358 Pfam PF01312 FlhB HrpN YscU SpaS Family 6 342 2.3E-105 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 269 284 2.1E-38 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 225 242 2.1E-38 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 9 31 2.1E-38 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 299 320 2.1E-38 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_19530 4aa766b90a2b4d313799190748a2900a 358 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 205 223 2.1E-38 T 11-10-2018 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 PIRSF PIRSF006113 1 120 1.2E-54 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 Gene3D G3DSA:3.30.479.10 1 120 3.3E-50 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 TIGRFAM TIGR00039 6PTHBS: 6-pyruvoyl tetrahydropterin synthase/QueD family protein 3 119 9.1E-38 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 5 96 5.2E-34 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 6 120 3.3E-35 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 BED32_04550 1524fa526b1f7b7716b543a17a551d4c 120 SUPERFAMILY SSF55620 3 119 8.89E-41 T 11-10-2018 BED32_10735 5e99445fdfb8063c565195a7f47e052f 154 Gene3D G3DSA:3.90.1720.10 33 154 4.1E-38 T 11-10-2018 BED32_10735 5e99445fdfb8063c565195a7f47e052f 154 SUPERFAMILY SSF54001 33 154 3.19E-38 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_10735 5e99445fdfb8063c565195a7f47e052f 154 Pfam PF00877 NlpC/P60 family 47 153 5.1E-28 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain BED32_09260 559dc1713581aeb5e60d1ff487944fc8 331 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 26 300 2.0E-104 T 11-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BED32_09260 559dc1713581aeb5e60d1ff487944fc8 331 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 10 331 194.31 T 11-10-2018 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BED32_09260 559dc1713581aeb5e60d1ff487944fc8 331 Gene3D G3DSA:1.10.4200.10 186 302 1.5E-5 T 11-10-2018 BED32_09260 559dc1713581aeb5e60d1ff487944fc8 331 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 29 299 1.4E-83 T 11-10-2018 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 BED32_10875 7d62185cae4d492987321e0242aee0fb 405 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 4 383 2.5E-108 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 BED32_10875 7d62185cae4d492987321e0242aee0fb 405 Gene3D G3DSA:1.20.1720.10 7 381 1.2E-80 T 11-10-2018 BED32_10875 7d62185cae4d492987321e0242aee0fb 405 SUPERFAMILY SSF103473 7 389 4.45E-60 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_10875 7d62185cae4d492987321e0242aee0fb 405 Pfam PF07690 Major Facilitator Superfamily 14 345 7.5E-41 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 189.297 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 Gene3D G3DSA:3.40.50.300 9 316 1.3E-94 T 11-10-2018 BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 PIRSF PIRSF000545 1 316 2.6E-148 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 244 3.0E-15 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 SUPERFAMILY SSF52540 10 315 1.41E-76 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19905 4c74cbbd6acc967a649e877dbf89a557 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 2.6E-169 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 BED32_20495 31e2a36f19af729590f22a51241f994c 108 SUPERFAMILY SSF52833 2 107 3.19E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_20495 31e2a36f19af729590f22a51241f994c 108 PIRSF PIRSF000077 2 108 2.8E-44 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BED32_20495 31e2a36f19af729590f22a51241f994c 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.1E-10 T 11-10-2018 BED32_20495 31e2a36f19af729590f22a51241f994c 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.1E-10 T 11-10-2018 BED32_20495 31e2a36f19af729590f22a51241f994c 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.1E-10 T 11-10-2018 BED32_20495 31e2a36f19af729590f22a51241f994c 108 Gene3D G3DSA:3.40.30.10 1 108 1.3E-37 T 11-10-2018 BED32_20495 31e2a36f19af729590f22a51241f994c 108 Pfam PF00085 Thioredoxin 5 106 1.4E-33 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 BED32_20495 31e2a36f19af729590f22a51241f994c 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 6.8E-39 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 BED32_20495 31e2a36f19af729590f22a51241f994c 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_17465 2d1f6e7fad4ad460d98b92a0b03472fc 200 Pfam PF13023 HD domain 21 183 1.3E-48 T 11-10-2018 IPR006674 HD domain BED32_17465 2d1f6e7fad4ad460d98b92a0b03472fc 200 Gene3D G3DSA:1.10.3210.10 9 200 5.3E-53 T 11-10-2018 BED32_17465 2d1f6e7fad4ad460d98b92a0b03472fc 200 SUPERFAMILY SSF109604 12 190 2.26E-44 T 11-10-2018 BED32_01315 b3898ab8c9335d1be3505dd6fb93fd7d 501 Gene3D G3DSA:3.40.309.10 249 454 7.6E-148 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 BED32_01315 b3898ab8c9335d1be3505dd6fb93fd7d 501 Gene3D G3DSA:3.40.605.10 24 462 7.6E-148 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 BED32_01315 b3898ab8c9335d1be3505dd6fb93fd7d 501 Pfam PF00171 Aldehyde dehydrogenase family 16 480 8.4E-137 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 BED32_01315 b3898ab8c9335d1be3505dd6fb93fd7d 501 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 485 3.4E-201 T 11-10-2018 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00640+1.2.1.27|MetaCyc: PWY-5642|Reactome: R-HSA-70895 BED32_01315 b3898ab8c9335d1be3505dd6fb93fd7d 501 SUPERFAMILY SSF53720 3 485 4.71E-142 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 BED32_02590 37893fd607814aab23842001e44910ab 181 Gene3D G3DSA:1.10.60.30 35 109 9.0E-22 T 11-10-2018 BED32_02590 37893fd607814aab23842001e44910ab 181 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 15 179 24.278 T 11-10-2018 IPR006839 Ribosome-associated, YjgA BED32_02590 37893fd607814aab23842001e44910ab 181 Pfam PF04751 Protein of unknown function (DUF615) 25 175 3.9E-57 T 11-10-2018 IPR006839 Ribosome-associated, YjgA BED32_02590 37893fd607814aab23842001e44910ab 181 PIRSF PIRSF016183 10 181 2.9E-73 T 11-10-2018 IPR006839 Ribosome-associated, YjgA BED32_02590 37893fd607814aab23842001e44910ab 181 SUPERFAMILY SSF158710 36 179 1.15E-52 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily BED32_02590 37893fd607814aab23842001e44910ab 181 Gene3D G3DSA:1.10.60.30 111 181 6.8E-29 T 11-10-2018 BED32_14190 e57e1fd6a452f59474f7135f29022055 342 Gene3D G3DSA:1.10.3720.10 132 336 4.8E-16 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14190 e57e1fd6a452f59474f7135f29022055 342 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 11 50 1.3E-8 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BED32_14190 e57e1fd6a452f59474f7135f29022055 342 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 339 1.6E-28 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_14190 e57e1fd6a452f59474f7135f29022055 342 SUPERFAMILY SSF161098 137 322 6.28E-18 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21615 07fd8f5cdfd88b31be9216ca33db959b 62 Pfam PF03050 Transposase IS66 family 17 59 5.3E-5 T 11-10-2018 IPR004291 Transposase, IS66 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 Gene3D G3DSA:3.30.70.980 130 205 5.3E-58 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 Gene3D G3DSA:3.30.70.980 85 236 5.3E-58 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 5.4E-103 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 SUPERFAMILY SSF75625 3 245 1.31E-94 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 Pfam PF01709 Transcriptional regulator 5 236 5.8E-91 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 35.727 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_10175 80eb5da9fdabb6e0a18423f4876bae82 247 Gene3D G3DSA:1.10.10.200 1 81 4.1E-34 T 11-10-2018 IPR017856 Integrase-like, N-terminal BED32_16560 5e4c0862e3428f2cbbbdde1224ef7bd2 111 SUPERFAMILY SSF159894 1 111 4.71E-58 T 11-10-2018 BED32_16560 5e4c0862e3428f2cbbbdde1224ef7bd2 111 Pfam PF09400 Protein of unknown function (DUF2002) 1 110 1.3E-59 T 11-10-2018 IPR018994 Protein of unknown function DUF2002 BED32_16560 5e4c0862e3428f2cbbbdde1224ef7bd2 111 Gene3D G3DSA:3.90.1150.40 1 111 2.1E-56 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 PRINTS PR00173 Glutamate-aspartate symporter signature 324 343 4.3E-13 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 PRINTS PR00173 Glutamate-aspartate symporter signature 187 206 4.3E-13 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 PRINTS PR00173 Glutamate-aspartate symporter signature 289 315 4.3E-13 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 PRINTS PR00173 Glutamate-aspartate symporter signature 351 371 4.3E-13 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 PRINTS PR00173 Glutamate-aspartate symporter signature 25 45 4.3E-13 T 11-10-2018 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 Gene3D G3DSA:1.10.3860.10 11 404 2.8E-70 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 SUPERFAMILY SSF118215 17 399 7.59E-94 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 Pfam PF00375 Sodium:dicarboxylate symporter family 17 397 2.6E-63 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 BED32_03265 774881c8710587b6c04e9b32aecaaaf8 418 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 5 406 36.102 T 11-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 BED32_21365 978f090732cd66977619006006cd035a 296 Gene3D G3DSA:3.40.50.2300 31 281 8.4E-99 T 11-10-2018 BED32_21365 978f090732cd66977619006006cd035a 296 Pfam PF13407 Periplasmic binding protein domain 29 281 2.5E-60 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_21365 978f090732cd66977619006006cd035a 296 SUPERFAMILY SSF53822 26 296 1.44E-87 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_21365 978f090732cd66977619006006cd035a 296 Gene3D G3DSA:3.40.50.2300 127 262 8.4E-99 T 11-10-2018 BED32_19220 bc2a025e76f44fdaf28cfdbe4d220351 101 SUPERFAMILY SSF50182 7 68 1.64E-23 T 11-10-2018 IPR010920 LSM domain superfamily BED32_19220 bc2a025e76f44fdaf28cfdbe4d220351 101 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.8E-29 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BED32_19220 bc2a025e76f44fdaf28cfdbe4d220351 101 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.244 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BED32_19220 bc2a025e76f44fdaf28cfdbe4d220351 101 Pfam PF17209 Hfq protein 7 68 5.7E-30 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 BED32_19220 bc2a025e76f44fdaf28cfdbe4d220351 101 Gene3D G3DSA:2.30.30.100 1 72 1.3E-33 T 11-10-2018 BED32_05070 e62746618e4e760162ba24f920897d8c 298 Pfam PF01548 Transposase 4 105 2.6E-12 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_05070 e62746618e4e760162ba24f920897d8c 298 Pfam PF02371 Transposase IS116/IS110/IS902 family 170 246 1.7E-24 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_20310 3742d04ebd5f0239c5234bc8de7f98c2 316 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 3 316 1.9E-107 T 11-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 BED32_20310 3742d04ebd5f0239c5234bc8de7f98c2 316 SUPERFAMILY SSF144083 251 314 9.29E-21 T 11-10-2018 BED32_20310 3742d04ebd5f0239c5234bc8de7f98c2 316 Gene3D G3DSA:1.20.58.340 240 316 4.1E-26 T 11-10-2018 BED32_20310 3742d04ebd5f0239c5234bc8de7f98c2 316 Pfam PF01544 CorA-like Mg2+ transporter protein 27 312 8.9E-54 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 BED32_20310 3742d04ebd5f0239c5234bc8de7f98c2 316 SUPERFAMILY SSF143865 1 255 1.19E-36 T 11-10-2018 BED32_07920 4cf0d188196530f2fd07be47f8ef5c1b 338 Gene3D G3DSA:3.90.25.10 182 328 3.2E-143 T 11-10-2018 BED32_07920 4cf0d188196530f2fd07be47f8ef5c1b 338 SUPERFAMILY SSF51735 1 336 2.24E-101 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_07920 4cf0d188196530f2fd07be47f8ef5c1b 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 335 1.4E-144 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 BED32_07920 4cf0d188196530f2fd07be47f8ef5c1b 338 Gene3D G3DSA:3.40.50.720 3 262 3.2E-143 T 11-10-2018 BED32_07920 4cf0d188196530f2fd07be47f8ef5c1b 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 4.5E-66 T 11-10-2018 IPR016040 NAD(P)-binding domain BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 SUPERFAMILY SSF52540 2 188 1.01E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 Pfam PF00005 ABC transporter 18 157 1.9E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 201 2.5E-79 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 Gene3D G3DSA:3.40.50.300 1 206 1.4E-41 T 11-10-2018 BED32_14995 f6eca3e8e606bf00172ba79009940fd0 208 SMART SM00382 26 194 0.0044 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13225 fc8b3558213a51612e61d468a72e1a1f 81 SUPERFAMILY SSF54857 1 80 1.96E-28 T 11-10-2018 IPR036687 DinI-like superfamily BED32_13225 fc8b3558213a51612e61d468a72e1a1f 81 Gene3D G3DSA:3.30.910.10 1 81 2.4E-35 T 11-10-2018 IPR036687 DinI-like superfamily BED32_13225 fc8b3558213a51612e61d468a72e1a1f 81 Pfam PF06183 DinI-like family 14 78 5.8E-29 T 11-10-2018 IPR010391 DNA damage-inducible protein DinI-like BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Gene3D G3DSA:3.30.70.1450 216 278 1.9E-9 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Pfam PF06826 Predicted Permease Membrane Region 378 547 1.8E-41 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Pfam PF06826 Predicted Permease Membrane Region 10 175 1.0E-40 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_13930 8ef520fbc5e52b766c54167226037a46 555 SUPERFAMILY SSF116726 220 275 1.7E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_13930 8ef520fbc5e52b766c54167226037a46 555 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 383 534 2.2E-46 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_13930 8ef520fbc5e52b766c54167226037a46 555 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 14 162 8.2E-40 T 11-10-2018 IPR006512 YidE/YbjL duplication BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Pfam PF02080 TrkA-C domain 298 365 1.4E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Pfam PF02080 TrkA-C domain 220 271 5.7E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 550 57.941 T 11-10-2018 IPR023017 Transport protein YbjL, putative BED32_13930 8ef520fbc5e52b766c54167226037a46 555 Gene3D G3DSA:3.30.70.1450 292 366 6.3E-7 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_13930 8ef520fbc5e52b766c54167226037a46 555 SUPERFAMILY SSF116726 284 367 5.1E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 BED32_00060 64f0fdc24c7dd0e9d8e6ee23ec71ca9f 182 PIRSF PIRSF007043 1 182 2.5E-129 T 11-10-2018 IPR016505 Type III secretion system YopQ BED32_19515 d7b98927236f4755be842b9d2eddc1d0 239 Gene3D G3DSA:3.30.1150.10 112 238 5.2E-27 T 11-10-2018 BED32_19515 d7b98927236f4755be842b9d2eddc1d0 239 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 159 229 4.7E-14 T 11-10-2018 IPR006260 TonB/TolA, C-terminal BED32_19515 d7b98927236f4755be842b9d2eddc1d0 239 SUPERFAMILY SSF74653 134 225 2.22E-17 T 11-10-2018 BED32_19515 d7b98927236f4755be842b9d2eddc1d0 239 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 158 236 9.4E-12 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 BED32_11335 66ee6e4160abd6252cf7674127e1a78d 101 Pfam PF13710 ACT domain 20 80 1.2E-8 T 11-10-2018 BED32_11335 66ee6e4160abd6252cf7674127e1a78d 101 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 17 80 1.0E-14 T 11-10-2018 BED32_11335 66ee6e4160abd6252cf7674127e1a78d 101 Gene3D G3DSA:3.30.70.260 2 98 8.2E-30 T 11-10-2018 BED32_11335 66ee6e4160abd6252cf7674127e1a78d 101 SUPERFAMILY SSF55021 10 83 1.96E-16 T 11-10-2018 BED32_04810 336b292af5d39bc74f169b4aa85a6a55 319 SUPERFAMILY SSF100950 60 316 2.43E-61 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_04810 336b292af5d39bc74f169b4aa85a6a55 319 Gene3D G3DSA:3.40.50.1360 52 316 3.9E-81 T 11-10-2018 BED32_04810 336b292af5d39bc74f169b4aa85a6a55 319 Pfam PF04198 Putative sugar-binding domain 58 315 1.7E-69 T 11-10-2018 IPR007324 Sugar-binding domain, putative GO:0030246 BED32_04810 336b292af5d39bc74f169b4aa85a6a55 319 Gene3D G3DSA:1.10.10.60 1 51 9.9E-23 T 11-10-2018 BED32_20695 7e65cdee0b69113c1642db55d46b2078 223 Pfam PF03475 3-alpha domain 168 211 4.0E-14 T 11-10-2018 IPR005163 3-alpha domain BED32_20695 7e65cdee0b69113c1642db55d46b2078 223 SUPERFAMILY SSF50800 3 222 1.94E-73 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily BED32_20695 7e65cdee0b69113c1642db55d46b2078 223 Pfam PF03473 MOSC domain 46 159 1.9E-20 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 BED32_20695 7e65cdee0b69113c1642db55d46b2078 223 Gene3D G3DSA:2.40.33.20 1 223 1.8E-77 T 11-10-2018 BED32_15445 5b8a12ce9d69d784c1f87b963ffc38e8 301 SUPERFAMILY SSF54909 1 299 1.68E-90 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_15445 5b8a12ce9d69d784c1f87b963ffc38e8 301 Pfam PF04261 Dyp-type peroxidase family 5 297 7.4E-90 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 BED32_15445 5b8a12ce9d69d784c1f87b963ffc38e8 301 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 298 4.7E-84 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 BED32_20335 f7eb2142da16939db134d5223db2e1c4 238 SUPERFAMILY SSF56784 10 238 8.53E-41 T 11-10-2018 IPR036412 HAD-like superfamily BED32_20335 f7eb2142da16939db134d5223db2e1c4 238 Gene3D G3DSA:1.20.120.1600 24 110 4.1E-62 T 11-10-2018 BED32_20335 f7eb2142da16939db134d5223db2e1c4 238 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 118 201 1.9E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_20335 f7eb2142da16939db134d5223db2e1c4 238 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 207 8.4E-12 T 11-10-2018 BED32_20335 f7eb2142da16939db134d5223db2e1c4 238 Gene3D G3DSA:3.40.50.1000 12 231 4.1E-62 T 11-10-2018 IPR023214 HAD superfamily BED32_18740 dd22c1b690e949597117fb1303ab24c9 193 TIGRFAM TIGR03292 PhnH_redo: phosphonate C-P lyase system protein PhnH 7 189 6.5E-52 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 BED32_18740 dd22c1b690e949597117fb1303ab24c9 193 Pfam PF05845 Bacterial phosphonate metabolism protein (PhnH) 6 191 4.0E-60 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 BED32_18740 dd22c1b690e949597117fb1303ab24c9 193 SUPERFAMILY SSF159709 13 192 2.22E-54 T 11-10-2018 IPR038058 PhnH-like superfamily BED32_18740 dd22c1b690e949597117fb1303ab24c9 193 Gene3D G3DSA:3.40.50.11310 1 193 3.3E-61 T 11-10-2018 IPR038058 PhnH-like superfamily BED32_18740 dd22c1b690e949597117fb1303ab24c9 193 PIRSF PIRSF020680 1 193 9.6E-55 T 11-10-2018 IPR008772 Bacterial phosphonate metabolism, PhnH GO:0019634 BED32_12745 56bff913af0d00896766b28666743e45 550 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 1 544 43.02 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 BED32_12745 56bff913af0d00896766b28666743e45 550 SUPERFAMILY SSF56601 209 541 2.65E-85 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like BED32_12745 56bff913af0d00896766b28666743e45 550 Gene3D G3DSA:3.40.710.10 270 450 8.4E-104 T 11-10-2018 BED32_12745 56bff913af0d00896766b28666743e45 550 SUPERFAMILY SSF56519 37 208 1.26E-45 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 BED32_12745 56bff913af0d00896766b28666743e45 550 Pfam PF00905 Penicillin binding protein transpeptidase domain 234 528 2.0E-79 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 BED32_12745 56bff913af0d00896766b28666743e45 550 Gene3D G3DSA:3.90.1310.30 33 209 2.9E-45 T 11-10-2018 BED32_12745 56bff913af0d00896766b28666743e45 550 Gene3D G3DSA:3.30.450.330 211 524 8.4E-104 T 11-10-2018 BED32_12745 56bff913af0d00896766b28666743e45 550 Pfam PF03717 Penicillin-binding Protein dimerisation domain 42 194 1.4E-16 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 BED32_21955 39931ed11dc4a0706ba314086884dec3 267 Pfam PF00589 Phage integrase family 49 239 5.1E-38 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_21955 39931ed11dc4a0706ba314086884dec3 267 PIRSF PIRSF004576 7 264 5.5E-101 T 11-10-2018 IPR016423 Resolvase, Rsv BED32_21955 39931ed11dc4a0706ba314086884dec3 267 Gene3D G3DSA:1.10.443.10 42 253 1.3E-29 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_21955 39931ed11dc4a0706ba314086884dec3 267 SUPERFAMILY SSF56349 54 239 1.06E-25 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_20915 27a517756e51d6f02cb8e579d3e3128e 144 Gene3D G3DSA:3.40.250.10 23 142 6.1E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_20915 27a517756e51d6f02cb8e579d3e3128e 144 SMART SM00450 41 139 3.7E-20 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_20915 27a517756e51d6f02cb8e579d3e3128e 144 SUPERFAMILY SSF52821 16 143 1.05E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily BED32_20915 27a517756e51d6f02cb8e579d3e3128e 144 Pfam PF00581 Rhodanese-like domain 44 134 3.1E-17 T 11-10-2018 IPR001763 Rhodanese-like domain BED32_10070 9f1f2dee6c7104c0f8f572b5f7733182 144 SUPERFAMILY SSF53062 1 127 6.54E-34 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_10070 9f1f2dee6c7104c0f8f572b5f7733182 144 Pfam PF03610 PTS system fructose IIA component 4 113 1.9E-27 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 BED32_10070 9f1f2dee6c7104c0f8f572b5f7733182 144 Gene3D G3DSA:3.40.50.510 1 138 3.9E-33 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 BED32_05415 827277f24ae57996c3c6b1f5edc3e753 274 SUPERFAMILY SSF57938 171 221 4.58E-6 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BED32_05415 827277f24ae57996c3c6b1f5edc3e753 274 Gene3D G3DSA:3.30.260.20 162 274 9.0E-39 T 11-10-2018 BED32_05415 827277f24ae57996c3c6b1f5edc3e753 274 Gene3D G3DSA:3.30.260.20 60 140 1.9E-19 T 11-10-2018 BED32_05415 827277f24ae57996c3c6b1f5edc3e753 274 Pfam PF03589 Antitermination protein 23 109 6.0E-22 T 11-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 BED32_05415 827277f24ae57996c3c6b1f5edc3e753 274 Pfam PF03589 Antitermination protein 180 265 1.4E-22 T 11-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 BED32_06650 827277f24ae57996c3c6b1f5edc3e753 274 SUPERFAMILY SSF57938 171 221 4.58E-6 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily BED32_06650 827277f24ae57996c3c6b1f5edc3e753 274 Gene3D G3DSA:3.30.260.20 162 274 9.0E-39 T 11-10-2018 BED32_06650 827277f24ae57996c3c6b1f5edc3e753 274 Gene3D G3DSA:3.30.260.20 60 140 1.9E-19 T 11-10-2018 BED32_06650 827277f24ae57996c3c6b1f5edc3e753 274 Pfam PF03589 Antitermination protein 23 109 6.0E-22 T 11-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 BED32_06650 827277f24ae57996c3c6b1f5edc3e753 274 Pfam PF03589 Antitermination protein 180 265 1.4E-22 T 11-10-2018 IPR003222 Antitermination protein GO:0003677|GO:0006355 BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 SUPERFAMILY SSF52540 12 260 1.27E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 Gene3D G3DSA:3.40.50.300 9 334 1.7E-94 T 11-10-2018 BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 240 305 4.8E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 239 323 2.1E-25 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 SMART SM00382 46 238 3.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 Pfam PF00005 ABC transporter 37 188 1.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_01000 454725dfe6bbeaac4a3f252dfe61ba3a 334 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_08500 8f38765476039d8a91ecd66eb542f24d 221 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 133 216 9.6E-9 T 11-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like BED32_08500 8f38765476039d8a91ecd66eb542f24d 221 ProDom PD037531 MEMBRANE HYDROGENASE SUBUNIT COMPONENT HYDROGENASE-4 E OXIDOREDUCTASE PRECURSOR SIGNAL 1.-.-.- 30 202 1.0E-54 T 11-10-2018 BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 Pfam PF00437 Type II/IV secretion system protein 121 386 1.1E-84 T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 SUPERFAMILY SSF160246 10 73 5.23E-13 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 11 492 7.5E-194 T 11-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 Gene3D G3DSA:3.40.50.300 220 499 2.0E-109 T 11-10-2018 BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 Gene3D G3DSA:3.30.300.160 1 85 1.1E-8 T 11-10-2018 BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 SMART SM00382 247 368 0.0024 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 314 328 - T 11-10-2018 IPR001482 Type II/IV secretion system protein BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 SUPERFAMILY SSF52540 103 491 5.62E-96 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17210 4f8d2878729a2ebac9fd9014e9fb78ca 501 Gene3D G3DSA:3.30.450.90 86 219 5.3E-48 T 11-10-2018 BED32_08320 dd4bf090a58227a6092c59936df2fb2f 163 SUPERFAMILY SSF55729 1 160 2.74E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_08320 dd4bf090a58227a6092c59936df2fb2f 163 Pfam PF00583 Acetyltransferase (GNAT) family 32 133 6.7E-13 T 11-10-2018 IPR000182 GNAT domain BED32_08320 dd4bf090a58227a6092c59936df2fb2f 163 Gene3D G3DSA:3.40.630.30 3 162 1.0E-44 T 11-10-2018 BED32_07465 cfa55525f8b344009b7c8f4c3ca75a1b 246 SUPERFAMILY SSF161098 24 223 1.18E-36 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07465 cfa55525f8b344009b7c8f4c3ca75a1b 246 Gene3D G3DSA:1.10.3720.10 18 238 1.1E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_07465 cfa55525f8b344009b7c8f4c3ca75a1b 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 237 3.5E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_07465 cfa55525f8b344009b7c8f4c3ca75a1b 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 24 132 3.5E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_08225 4e69a6518c03beef356def789b2f0b47 436 Gene3D G3DSA:1.50.10.100 48 422 2.9E-122 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_08225 4e69a6518c03beef356def789b2f0b47 436 SUPERFAMILY SSF48230 98 375 1.28E-56 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_08225 4e69a6518c03beef356def789b2f0b47 436 Pfam PF05426 Alginate lyase 92 372 5.6E-90 T 11-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 SMART SM00357 5 69 4.3E-33 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 4.7E-33 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 PIRSF PIRSF002599 1 69 1.1E-25 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 Gene3D G3DSA:2.40.50.140 1 67 1.3E-31 T 11-10-2018 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_07365 c9980a06935f906d47056aa4c63595cb 69 SUPERFAMILY SSF50249 3 68 1.35E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_07365 c9980a06935f906d47056aa4c63595cb 69 PRINTS PR00050 Cold shock protein signature 42 60 2.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 PRINTS PR00050 Cold shock protein signature 6 21 2.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_07365 c9980a06935f906d47056aa4c63595cb 69 PRINTS PR00050 Cold shock protein signature 27 36 2.0E-18 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_00505 adf14c038aa520701016815d88a9acc1 137 Pfam PF00011 Hsp20/alpha crystallin family 42 137 4.0E-19 T 11-10-2018 IPR002068 Alpha crystallin/Hsp20 domain BED32_00505 adf14c038aa520701016815d88a9acc1 137 SUPERFAMILY SSF49764 30 137 1.78E-18 T 11-10-2018 IPR008978 HSP20-like chaperone BED32_00505 adf14c038aa520701016815d88a9acc1 137 Hamap MF_02000 Small heat shock protein IbpA [ibpA]. 1 137 43.469 T 11-10-2018 IPR023728 Small heat shock protein IbpA BED32_00505 adf14c038aa520701016815d88a9acc1 137 Gene3D G3DSA:2.60.40.790 33 137 6.9E-18 T 11-10-2018 IPR008978 HSP20-like chaperone BED32_09410 c8bcc4ad75f67e00c7e3bd82bdbaadf3 339 Pfam PF01548 Transposase 6 146 1.6E-14 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_09410 c8bcc4ad75f67e00c7e3bd82bdbaadf3 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 6.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Gene3D G3DSA:2.40.50.140 2 70 6.4E-31 T 11-10-2018 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 43 61 1.9E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 7 22 1.9E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PRINTS PR00050 Cold shock protein signature 28 37 1.9E-17 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SUPERFAMILY SSF50249 2 69 1.43E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 SMART SM00357 6 70 1.1E-30 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 Pfam PF00313 'Cold-shock' DNA-binding domain 5 69 3.4E-33 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_09465 9ada91f7eb5af6e6a8aa0dfe417ef213 70 PIRSF PIRSF002599 1 70 1.5E-26 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_13305 9dc06c365521d18a5a8301207f04a517 511 Gene3D G3DSA:1.20.1250.20 1 502 2.7E-162 T 11-10-2018 BED32_13305 9dc06c365521d18a5a8301207f04a517 511 Pfam PF00854 POT family 91 463 2.2E-63 T 11-10-2018 IPR000109 Proton-dependent oligopeptide transporter family GO:0016020|GO:0022857|GO:0055085 Reactome: R-HSA-427975 BED32_13305 9dc06c365521d18a5a8301207f04a517 511 SUPERFAMILY SSF103473 20 499 2.53E-26 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_13305 9dc06c365521d18a5a8301207f04a517 511 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 79 103 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BED32_13305 9dc06c365521d18a5a8301207f04a517 511 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 9 501 1.0E-109 T 11-10-2018 IPR005279 Dipeptide/tripeptide permease GO:0015833|GO:0016020|GO:1904680 BED32_13305 9dc06c365521d18a5a8301207f04a517 511 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 155 167 - T 11-10-2018 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 BED32_06720 b8c1a016aa88328fe2303447e6aa9f0b 272 Pfam PF01343 Peptidase family S49 123 266 1.6E-29 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BED32_06720 b8c1a016aa88328fe2303447e6aa9f0b 272 Gene3D G3DSA:3.90.226.10 56 261 2.4E-43 T 11-10-2018 BED32_06720 b8c1a016aa88328fe2303447e6aa9f0b 272 SUPERFAMILY SSF52096 50 257 4.81E-28 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_06720 b8c1a016aa88328fe2303447e6aa9f0b 272 Gene3D G3DSA:3.40.1750.20 160 226 2.4E-43 T 11-10-2018 BED32_09505 911c91e3687248aa7067d423756cf806 139 SUPERFAMILY SSF52402 3 138 1.67E-23 T 11-10-2018 BED32_09505 911c91e3687248aa7067d423756cf806 139 PIRSF PIRSF006276 1 139 1.8E-40 T 11-10-2018 IPR006015 Universal stress protein A BED32_09505 911c91e3687248aa7067d423756cf806 139 Gene3D G3DSA:3.40.50.620 3 139 5.6E-29 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_09505 911c91e3687248aa7067d423756cf806 139 Pfam PF00582 Universal stress protein family 2 138 9.9E-17 T 11-10-2018 IPR006016 UspA BED32_19165 9e775729081448594099c0ea30122122 102 Pfam PF07338 Protein of unknown function (DUF1471) 47 102 5.1E-19 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_19165 9e775729081448594099c0ea30122122 102 Gene3D G3DSA:3.30.1660.10 31 102 2.1E-16 T 11-10-2018 IPR025543 Dodecin-like BED32_19165 9e775729081448594099c0ea30122122 102 SUPERFAMILY SSF159871 4 102 2.88E-22 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_09580 de275f832d7286750d5288060dac4b0f 692 PIRSF PIRSF005419 15 692 1.1E-240 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 11-10-2018 IPR025505 FHIPEP conserved site BED32_09580 de275f832d7286750d5288060dac4b0f 692 Gene3D G3DSA:1.10.490.80 596 689 9.9E-8 T 11-10-2018 BED32_09580 de275f832d7286750d5288060dac4b0f 692 Pfam PF00771 FHIPEP family 31 681 1.5E-266 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 Gene3D G3DSA:3.40.30.60 361 504 2.6E-51 T 11-10-2018 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 1.5E-56 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_09580 de275f832d7286750d5288060dac4b0f 692 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 689 1.3E-278 T 11-10-2018 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 BED32_09580 de275f832d7286750d5288060dac4b0f 692 Gene3D G3DSA:1.10.8.540 505 593 1.3E-28 T 11-10-2018 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 140 6.1E-24 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 PRINTS PR00207 Flagellin signature 37 54 7.7E-10 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 PRINTS PR00207 Flagellin signature 111 134 7.7E-10 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 PRINTS PR00207 Flagellin signature 76 95 7.7E-10 T 11-10-2018 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 Pfam PF00700 Bacterial flagellin C-terminal helical region 338 421 1.5E-7 T 11-10-2018 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 Gene3D G3DSA:1.20.1330.10 44 372 1.2E-38 T 11-10-2018 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 Gene3D G3DSA:3.30.70.2120 178 321 1.2E-38 T 11-10-2018 BED32_03950 264bfcc4c7e1b48c43c76c37191f8328 422 SUPERFAMILY SSF64518 1 422 2.88E-51 T 11-10-2018 BED32_03180 a147ff22feff41ca2a5cab3784241a96 234 Gene3D G3DSA:2.60.120.10 134 234 4.8E-35 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_03180 a147ff22feff41ca2a5cab3784241a96 234 SUPERFAMILY SSF51182 1 232 3.5E-48 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_03180 a147ff22feff41ca2a5cab3784241a96 234 Gene3D G3DSA:2.60.120.10 12 133 7.8E-38 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_03180 a147ff22feff41ca2a5cab3784241a96 234 PIRSF PIRSF006232 1 232 3.5E-33 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BED32_03180 a147ff22feff41ca2a5cab3784241a96 234 Pfam PF02678 Pirin 5 119 9.9E-22 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BED32_00905 f23cd0558adfb1ffb578c45813b45619 122 Pfam PF06755 CbtA_toxin of type IV toxin-antitoxin system 1 112 3.7E-57 T 11-10-2018 IPR009610 CbtA toxin of type IV toxin-antitoxin system BED32_21290 1a1d1d4f5bb5bfde9af4d9dc005061e6 207 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 BED32_21290 1a1d1d4f5bb5bfde9af4d9dc005061e6 207 Gene3D G3DSA:3.40.30.10 18 207 1.0E-53 T 11-10-2018 BED32_21290 1a1d1d4f5bb5bfde9af4d9dc005061e6 207 PIRSF PIRSF001488 1 207 1.4E-90 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL BED32_21290 1a1d1d4f5bb5bfde9af4d9dc005061e6 207 SUPERFAMILY SSF52833 20 204 5.37E-46 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_21290 1a1d1d4f5bb5bfde9af4d9dc005061e6 207 Pfam PF01323 DSBA-like thioredoxin domain 40 195 8.6E-29 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 SMART SM00387 315 425 1.4E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 Gene3D G3DSA:1.10.287.130 162 272 2.0E-19 T 11-10-2018 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 SMART SM00304 158 210 1.5E-5 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 SMART SM00388 211 271 4.2E-5 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 SUPERFAMILY SSF55874 260 423 3.41E-38 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 SUPERFAMILY SSF47384 194 271 1.12E-9 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 Pfam PF00672 HAMP domain 164 206 1.0E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 423 3.4E-20 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 378 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 403 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 364 2.1E-11 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 BED32_11235 43fb71b25845a555409e4815e5cb4d0e 435 Gene3D G3DSA:3.30.565.10 278 425 1.3E-32 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 SUPERFAMILY SSF53901 8 258 1.63E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 SUPERFAMILY SSF53901 220 413 4.74E-60 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 8 249 3.8E-30 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 Gene3D G3DSA:3.40.47.10 263 415 2.4E-43 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 Gene3D G3DSA:3.40.47.10 1 260 4.9E-50 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 259 373 1.6E-30 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 SMART SM00825 Beta-ketoacyl synthase 10 414 3.7E-8 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain BED32_04740 e0b4fb81c9f828ec61a1b2635ae965da 416 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 159 175 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site BED32_17265 1d1e66f9706f119acd0f60c5b6bd555f 131 Pfam PF13474 SnoaL-like domain 6 114 9.0E-9 T 11-10-2018 IPR037401 SnoaL-like domain BED32_17265 1d1e66f9706f119acd0f60c5b6bd555f 131 TIGRFAM TIGR02246 TIGR02246: conserved hypothetical protein 5 121 1.2E-9 T 11-10-2018 IPR011944 Steroid delta5-4-isomerase KEGG: 00140+5.3.3.1|KEGG: 00984+5.3.3.1|MetaCyc: PWY-2582|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-699|MetaCyc: PWY-7299 BED32_17265 1d1e66f9706f119acd0f60c5b6bd555f 131 Gene3D G3DSA:3.10.450.50 3 130 2.4E-36 T 11-10-2018 BED32_17265 1d1e66f9706f119acd0f60c5b6bd555f 131 SUPERFAMILY SSF54427 6 128 8.79E-27 T 11-10-2018 IPR032710 NTF2-like domain superfamily BED32_11825 be666eb6df7240974ed998e4a7e32a06 311 Pfam PF03837 RecT family 37 216 5.6E-37 T 11-10-2018 IPR018330 RecT family GO:0003677|GO:0006259 BED32_12360 fb7d6c98b9332af529622322e7554664 478 Pfam PF05598 Transposase domain (DUF772) 52 127 6.0E-20 T 11-10-2018 IPR008490 Transposase InsH, N-terminal BED32_12360 fb7d6c98b9332af529622322e7554664 478 Pfam PF13751 Transposase DDE domain 328 446 1.3E-26 T 11-10-2018 IPR025668 Transposase DDE domain BED32_06615 cf9a3785cef0311a67721882491a5868 166 Pfam PF04448 Protein of unknown function (DUF551) 95 164 2.6E-11 T 11-10-2018 IPR007539 Domain of unknown function DUF551 BED32_06260 3afcd9147be18bd2e20a3dbc2853f099 121 SUPERFAMILY SSF75169 7 121 3.27E-31 T 11-10-2018 IPR027396 DsrEFH-like BED32_06260 3afcd9147be18bd2e20a3dbc2853f099 121 Gene3D G3DSA:3.40.1260.10 6 121 1.5E-30 T 11-10-2018 IPR027396 DsrEFH-like BED32_06260 3afcd9147be18bd2e20a3dbc2853f099 121 Pfam PF02635 DsrE/DsrF-like family 8 121 5.9E-20 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Pfam PF13954 PapC N-terminal domain 56 204 3.9E-42 T 11-10-2018 IPR025885 PapC, N-terminal domain GO:0005515 BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Gene3D G3DSA:3.10.20.410 54 181 3.8E-34 T 11-10-2018 BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Gene3D G3DSA:2.60.40.3110 288 377 7.7E-37 T 11-10-2018 BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Pfam PF00577 Outer membrane usher protein 221 385 2.6E-66 T 11-10-2018 IPR000015 Outer membrane usher protein GO:0009297|GO:0015473|GO:0016020 BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Pfam PF13953 PapC C-terminal domain 406 471 1.3E-23 T 11-10-2018 IPR025949 PapC-like, C-terminal domain BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 Gene3D G3DSA:2.60.40.2070 404 493 9.1E-22 T 11-10-2018 BED32_03155 280eaa217bbe2e7de4cce177ad4d2b0e 494 SUPERFAMILY SSF141729 56 181 2.62E-30 T 11-10-2018 IPR037224 PapC, N-terminal domain superfamily GO:0005515 BED32_04840 d22ed36f26b76a288844c71cf45bfa2f 244 SUPERFAMILY SSF52540 8 240 2.21E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04840 d22ed36f26b76a288844c71cf45bfa2f 244 Gene3D G3DSA:3.40.50.300 5 243 3.6E-56 T 11-10-2018 BED32_04840 d22ed36f26b76a288844c71cf45bfa2f 244 Pfam PF00005 ABC transporter 26 171 9.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_05905 e4ad1871c2db6fd0e43d0666268a0dc8 193 PIRSF PIRSF011489 1 193 1.5E-77 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 BED32_05905 e4ad1871c2db6fd0e43d0666268a0dc8 193 Pfam PF04336 Acyl carrier protein phosphodiesterase 81 185 1.4E-30 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 BED32_05905 e4ad1871c2db6fd0e43d0666268a0dc8 193 Hamap MF_01950 Acyl carrier protein phosphodiesterase [acpH]. 1 193 56.419 T 11-10-2018 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 BED32_14070 5f3320fe623061ab83bd98dd0e978212 159 Gene3D G3DSA:2.60.40.3590 50 159 2.5E-54 T 11-10-2018 BED32_05895 5bf55126b3da0ecb5a1cf26b8bb191e3 50 ProDom PD005979 PLASMID MEMBRANE TRANSMEMBRANE POST-SEGREGATION KILLING INHERITANCE ALTERING PERMEABILITY STABLE MAINTENANCE 1 48 1.0E-5 T 11-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 BED32_05895 5bf55126b3da0ecb5a1cf26b8bb191e3 50 Pfam PF01848 Hok/gef family 6 46 2.2E-20 T 11-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 BED32_05895 5bf55126b3da0ecb5a1cf26b8bb191e3 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 25 47 5.9E-16 T 11-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 BED32_05895 5bf55126b3da0ecb5a1cf26b8bb191e3 50 PRINTS PR00281 Hok/Gef cell toxic protein family signature 5 23 5.9E-16 T 11-10-2018 IPR000021 Hok/gef cell toxic protein GO:0016020 BED32_11920 1115b1980a9c8b93d68281003b97af30 253 Pfam PF01569 PAP2 superfamily 80 232 2.5E-26 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_11920 1115b1980a9c8b93d68281003b97af30 253 SMART SM00014 76 227 4.1E-32 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase BED32_11920 1115b1980a9c8b93d68281003b97af30 253 SUPERFAMILY SSF48317 2 234 2.75E-30 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily BED32_11920 1115b1980a9c8b93d68281003b97af30 253 Gene3D G3DSA:1.20.144.10 2 253 2.1E-78 T 11-10-2018 BED32_07190 da26509e7457242469ef7d410cc9eb1e 220 PIRSF PIRSF028438 1 211 1.6E-52 T 11-10-2018 IPR016884 Uncharacterised conserved protein UCP028438 BED32_09720 c6f20207abfcd40368f24efd1a6bbb47 214 Gene3D G3DSA:2.160.10.10 2 207 3.9E-55 T 11-10-2018 BED32_09720 c6f20207abfcd40368f24efd1a6bbb47 214 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 1.2E-8 T 11-10-2018 IPR001451 Hexapeptide repeat BED32_09720 c6f20207abfcd40368f24efd1a6bbb47 214 SUPERFAMILY SSF51161 50 201 8.46E-38 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily BED32_15535 d80a3251ab01f12d061814236596f113 404 Gene3D G3DSA:3.30.160.660 208 321 1.8E-6 T 11-10-2018 BED32_15535 d80a3251ab01f12d061814236596f113 404 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 58 382 5.6E-23 T 11-10-2018 IPR003776 YcaO-like domain BED32_00195 9d785b281378ab68f874372773d80492 291 SUPERFAMILY SSF103481 41 141 5.62E-12 T 11-10-2018 BED32_00195 9d785b281378ab68f874372773d80492 291 SUPERFAMILY SSF103481 190 290 1.57E-8 T 11-10-2018 BED32_00195 9d785b281378ab68f874372773d80492 291 Pfam PF00892 EamA-like transporter family 8 140 7.9E-26 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_00195 9d785b281378ab68f874372773d80492 291 Pfam PF00892 EamA-like transporter family 153 288 9.2E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_21820 6287bc1daa699abbac9724be2a6398a0 463 Gene3D G3DSA:1.10.10.730 124 184 2.3E-5 T 11-10-2018 BED32_21820 6287bc1daa699abbac9724be2a6398a0 463 Pfam PF08535 KorB domain 157 224 2.4E-9 T 11-10-2018 IPR013741 Repressor KorB domain BED32_21820 6287bc1daa699abbac9724be2a6398a0 463 SUPERFAMILY SSF109709 126 236 5.23E-11 T 11-10-2018 BED32_08790 ed5d136f769bba552eeb3dc5cc028ec2 370 Pfam PF07993 Male sterility protein 7 238 8.2E-33 T 11-10-2018 IPR013120 Male sterility, NAD-binding Reactome: R-HSA-8848584 BED32_08790 ed5d136f769bba552eeb3dc5cc028ec2 370 SUPERFAMILY SSF51735 3 354 3.28E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08790 ed5d136f769bba552eeb3dc5cc028ec2 370 Gene3D G3DSA:3.40.50.720 2 305 6.5E-48 T 11-10-2018 BED32_03200 e0d12ddfa85f8feb6b206a8caa3927c4 94 Pfam PF13997 YqjK-like protein 13 85 4.5E-32 T 11-10-2018 IPR025612 YqjK-like protein BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 81 100 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 187 205 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 161 179 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 103 120 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 21 36 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 36 51 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 251 263 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 55 70 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 PRINTS PR01010 Flagellar P-ring protein signature 120 138 6.8E-72 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 Pfam PF02119 Flagellar P-ring protein 24 363 9.9E-128 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_03915 050cba7195f2d363d03f90365bb4f553 364 Hamap MF_00416 Flagellar P-ring protein [flgI]. 1 364 35.281 T 11-10-2018 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 BED32_12425 bc7ef84479b352d71031e1149e5bc3c4 104 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 19 93 5.6E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_12425 bc7ef84479b352d71031e1149e5bc3c4 104 Gene3D G3DSA:1.10.760.10 10 103 6.0E-12 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_12425 bc7ef84479b352d71031e1149e5bc3c4 104 SUPERFAMILY SSF46626 11 97 7.62E-14 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_02840 72556aef6c9612b993cc55d1aa282d04 101 Pfam PF01381 Helix-turn-helix 17 65 7.3E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_02840 72556aef6c9612b993cc55d1aa282d04 101 SMART SM00530 12 67 1.9E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_02840 72556aef6c9612b993cc55d1aa282d04 101 Gene3D G3DSA:1.10.260.40 1 82 1.2E-29 T 11-10-2018 BED32_02840 72556aef6c9612b993cc55d1aa282d04 101 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 3 81 5.2E-30 T 11-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 BED32_02840 72556aef6c9612b993cc55d1aa282d04 101 SUPERFAMILY SSF47413 8 86 7.51E-25 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 156 184 - T 11-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 Gene3D G3DSA:1.20.81.30 51 164 2.2E-27 T 11-10-2018 BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 376 395 2.1E-17 T 11-10-2018 IPR003004 GspF/PilC family BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 156 184 2.1E-17 T 11-10-2018 IPR003004 GspF/PilC family BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 57 69 2.1E-17 T 11-10-2018 IPR003004 GspF/PilC family BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 360 374 2.1E-17 T 11-10-2018 IPR003004 GspF/PilC family BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 Gene3D G3DSA:1.20.81.30 248 358 8.8E-23 T 11-10-2018 BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 Pfam PF00482 Type II secretion system (T2SS), protein F 267 387 5.5E-28 T 11-10-2018 IPR018076 Type II secretion system F domain BED32_17805 d755e90fb6fed311a9217c5a662e4bb2 396 Pfam PF00482 Type II secretion system (T2SS), protein F 62 184 5.9E-26 T 11-10-2018 IPR018076 Type II secretion system F domain BED32_05065 5ae57d522be98a5fd55f90854e5ebf49 400 Pfam PF00872 Transposase, Mutator family 11 373 6.3E-101 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 SUPERFAMILY SSF51569 3 216 6.49E-79 T 11-10-2018 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 5 213 1.5E-83 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 PIRSF PIRSF001357 2 222 1.5E-72 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 Pfam PF01791 DeoC/LacD family aldolase 8 212 3.5E-17 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 3 217 34.655 T 11-10-2018 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 SMART SM01133 4 215 8.9E-94 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 BED32_13945 17630a9e796ecc1e5523f45c3087330d 223 Gene3D G3DSA:3.20.20.70 1 221 6.3E-92 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_17680 7ce6402bb4b96847f0c8ab7f190be851 256 PIRSF PIRSF006648 7 253 7.0E-24 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_17680 7ce6402bb4b96847f0c8ab7f190be851 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.4E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_17680 7ce6402bb4b96847f0c8ab7f190be851 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.4E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_17680 7ce6402bb4b96847f0c8ab7f190be851 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.4E-5 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 BED32_17680 7ce6402bb4b96847f0c8ab7f190be851 256 Pfam PF01061 ABC-2 type transporter 9 218 8.4E-37 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 BED32_17810 71f761073d1e843ef17398600b963fef 347 SMART SM01240 7 344 4.5E-140 T 11-10-2018 BED32_17810 71f761073d1e843ef17398600b963fef 347 PIRSF PIRSF000235 1 347 8.4E-200 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 BED32_17810 71f761073d1e843ef17398600b963fef 347 SUPERFAMILY SSF51412 7 335 2.88E-100 T 11-10-2018 BED32_17810 71f761073d1e843ef17398600b963fef 347 Hamap MF_00596 GMP reductase [guaC]. 1 345 50.565 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 BED32_17810 71f761073d1e843ef17398600b963fef 347 TIGRFAM TIGR01305 GMP_reduct_1: guanosine monophosphate reductase 2 344 1.5E-198 T 11-10-2018 IPR005993 GMP reductase GO:0003920|GO:0009117|GO:1902560 KEGG: 00230+1.7.1.7|Reactome: R-HSA-74217 BED32_17810 71f761073d1e843ef17398600b963fef 347 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 176 188 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 BED32_17810 71f761073d1e843ef17398600b963fef 347 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 9 338 2.1E-79 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 BED32_17810 71f761073d1e843ef17398600b963fef 347 Gene3D G3DSA:3.20.20.70 1 345 8.3E-116 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 Gene3D G3DSA:3.40.50.300 1 241 1.2E-69 T 11-10-2018 BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 PIRSF PIRSF039085 1 242 2.1E-83 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 SMART SM00382 27 218 1.3E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 SUPERFAMILY SSF52540 3 234 1.1E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13860 4257d7d78b4185fe6f752bab8a532227 242 Pfam PF00005 ABC transporter 20 170 5.8E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PIRSF PIRSF002097 1 98 8.5E-46 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 SUPERFAMILY SSF46689 4 98 5.38E-27 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 8.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 8.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 Gene3D G3DSA:1.10.10.60 1 98 2.7E-35 T 11-10-2018 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 5.1E-34 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 5.1E-34 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 5.1E-34 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 5.1E-34 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 33.512 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 BED32_02405 b35aa6e9977e10a02a1243efe8e50ad3 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.8E-14 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 BED32_07045 b3d7a6caf1d158af3566e4350da65c8f 152 Pfam PF03245 Bacteriophage Rz lysis protein 29 150 2.2E-44 T 11-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 82 93 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 Pfam PF12798 4Fe-4S binding domain 147 167 0.014 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 Gene3D G3DSA:3.30.70.20 76 208 1.7E-14 T 11-10-2018 BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 Gene3D G3DSA:3.30.70.20 4 75 1.0E-7 T 11-10-2018 BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 Pfam PF00037 4Fe-4S binding domain 76 98 5.1E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_08520 3c79f4bfbdb7ba32a4d9e2f3f051b810 213 SUPERFAMILY SSF54862 1 180 7.18E-39 T 11-10-2018 BED32_12520 751b923074c941559f3544edf9d67459 94 Pfam PF04343 Protein of unknown function, DUF488 1 90 2.1E-23 T 11-10-2018 IPR007438 Protein of unknown function DUF488 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 Pfam PF02308 MgtC family 10 129 2.6E-38 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 PRINTS PR01837 MgtC/SapB protein signature 32 50 8.8E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 PRINTS PR01837 MgtC/SapB protein signature 57 79 8.8E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 PRINTS PR01837 MgtC/SapB protein signature 13 32 8.8E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 PRINTS PR01837 MgtC/SapB protein signature 84 108 8.8E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_09490 65fe00cfaf1f57f99633349e617a2ea0 232 Gene3D G3DSA:3.30.70.260 125 230 5.7E-15 T 11-10-2018 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 Gene3D G3DSA:1.10.10.10 2 85 3.1E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 Pfam PF03466 LysR substrate binding domain 89 284 6.3E-28 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 4.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 SUPERFAMILY SSF53850 90 290 5.07E-33 T 11-10-2018 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 SUPERFAMILY SSF46785 6 83 2.83E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 4.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 4.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 4.4E-7 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_15245 3606cff6d59635da3f612aa65c3cc86e 295 Gene3D G3DSA:3.40.190.290 94 267 7.5E-22 T 11-10-2018 BED32_08565 1efc24de735235a16a22694bea12bbcd 406 Pfam PF07690 Major Facilitator Superfamily 11 347 1.7E-36 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_08565 1efc24de735235a16a22694bea12bbcd 406 SUPERFAMILY SSF103473 11 392 1.31E-51 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_08565 1efc24de735235a16a22694bea12bbcd 406 Gene3D G3DSA:1.20.1250.20 5 387 3.6E-45 T 11-10-2018 BED32_21945 0e4a0fce27f8276c0edf817a4f9c5472 1294 Pfam PF07916 TraG-like protein, N-terminal region 23 486 9.6E-39 T 11-10-2018 IPR012931 TraG-like, N-terminal BED32_21945 0e4a0fce27f8276c0edf817a4f9c5472 1294 Pfam PF13166 AAA domain 1073 1277 2.9E-40 T 11-10-2018 IPR026866 Protein CR006, P-loop domain BED32_17615 674f06ce47f45da930e1b48c2e99a97c 264 SUPERFAMILY SSF52540 11 237 6.74E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_17615 674f06ce47f45da930e1b48c2e99a97c 264 Gene3D G3DSA:3.40.50.300 2 256 3.8E-69 T 11-10-2018 BED32_17615 674f06ce47f45da930e1b48c2e99a97c 264 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_17615 674f06ce47f45da930e1b48c2e99a97c 264 Pfam PF00005 ABC transporter 26 175 2.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_17615 674f06ce47f45da930e1b48c2e99a97c 264 SMART SM00382 35 223 9.1E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.2E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 5.2E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 5.2E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 5.2E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 5.2E-16 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 BED32_15810 a67153d43421d7a371003771dae40366 259 SUPERFAMILY SSF51735 3 258 7.5E-63 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 1.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.8E-6 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_15810 a67153d43421d7a371003771dae40366 259 Gene3D G3DSA:3.40.50.720 1 258 1.1E-61 T 11-10-2018 BED32_15810 a67153d43421d7a371003771dae40366 259 Pfam PF00106 short chain dehydrogenase 3 197 3.7E-46 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 Gene3D G3DSA:3.40.50.150 31 251 5.8E-76 T 11-10-2018 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 16 250 39.373 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 158 172 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 36 51 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 25 250 3.9E-87 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 Pfam PF01209 ubiE/COQ5 methyltransferase family 16 250 6.0E-107 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 BED32_20030 03367bb3dfefbb6d3ea0348ebf1a5902 251 SUPERFAMILY SSF53335 19 248 2.63E-51 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_21740 a586a238b3367bd3a52c6ca215c57521 100 Gene3D G3DSA:1.10.260.40 21 97 7.1E-17 T 11-10-2018 BED32_21740 a586a238b3367bd3a52c6ca215c57521 100 SUPERFAMILY SSF47413 28 95 9.21E-17 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_21740 a586a238b3367bd3a52c6ca215c57521 100 SMART SM00530 40 95 2.4E-12 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_21740 a586a238b3367bd3a52c6ca215c57521 100 Pfam PF01381 Helix-turn-helix 41 92 1.1E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_10300 d1763553d9fa81ad8fed94b0b38f106a 270 PIRSF PIRSF003092 1 270 3.8E-98 T 11-10-2018 IPR025501 ATP binding protein MinD BED32_10300 d1763553d9fa81ad8fed94b0b38f106a 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 227 3.7E-20 T 11-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain BED32_10300 d1763553d9fa81ad8fed94b0b38f106a 270 Gene3D G3DSA:3.40.50.300 1 260 1.8E-76 T 11-10-2018 BED32_10300 d1763553d9fa81ad8fed94b0b38f106a 270 SUPERFAMILY SSF52540 1 268 1.74E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10300 d1763553d9fa81ad8fed94b0b38f106a 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 2.1E-111 T 11-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 BED32_16140 8691a521d77da162339f5b575e823cbe 117 Pfam PF10941 Protein of unknown function DUF2620 2 116 2.3E-48 T 11-10-2018 IPR021238 Protein of unknown function DUF2620 BED32_01070 8d87f419685ed753d57f9ea6cd512d47 159 Pfam PF00754 F5/8 type C domain 27 145 3.4E-17 T 11-10-2018 IPR000421 Coagulation factor 5/8 C-terminal domain BED32_01070 8d87f419685ed753d57f9ea6cd512d47 159 SUPERFAMILY SSF49785 23 147 8.51E-23 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_01070 8d87f419685ed753d57f9ea6cd512d47 159 Gene3D G3DSA:2.60.120.260 17 159 2.5E-39 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 Gene3D G3DSA:3.30.1330.60 39 168 5.8E-48 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 Pfam PF00691 OmpA family 67 162 5.1E-21 T 11-10-2018 IPR006665 OmpA-like domain BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 ProSitePatterns PS01068 OmpA-like domain. 100 144 - T 11-10-2018 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 66 168 3.9E-46 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 5 168 31.775 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 PRINTS PR01021 OMPA domain signature 113 129 2.9E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 PRINTS PR01021 OMPA domain signature 68 90 2.9E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 PRINTS PR01021 OMPA domain signature 98 113 2.9E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_07830 d5d376f7f75164d1d9c41d286b7664bb 168 SUPERFAMILY SSF103088 56 167 2.22E-34 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_16845 459a9922101bdfdb9b17c8afb364d1da 176 Gene3D G3DSA:3.30.910.20 32 176 2.8E-49 T 11-10-2018 IPR024930 Skp domain superfamily BED32_16845 459a9922101bdfdb9b17c8afb364d1da 176 Pfam PF03938 Outer membrane protein (OmpH-like) 21 174 1.1E-37 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 BED32_16845 459a9922101bdfdb9b17c8afb364d1da 176 SMART SM00935 23 176 5.8E-57 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 BED32_16845 459a9922101bdfdb9b17c8afb364d1da 176 PIRSF PIRSF002094 10 176 1.4E-63 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 BED32_16845 459a9922101bdfdb9b17c8afb364d1da 176 SUPERFAMILY SSF111384 33 175 1.57E-39 T 11-10-2018 BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 Gene3D G3DSA:3.30.70.1710 1 98 1.4E-42 T 11-10-2018 BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 ProSitePatterns PS01139 Bacterial microcompartiments proteins signature. 22 41 - T 11-10-2018 IPR020808 Bacterial microcompartments protein, conserved site BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 SMART SM00877 4 80 5.9E-36 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 Pfam PF00936 BMC domain 5 80 1.6E-28 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 SUPERFAMILY SSF143414 4 93 2.22E-32 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08935 da360faee8b284d8e05b266702fe3cc1 98 ProDom PD003442 UTILIZATION MICROCOMPARTMENTS PROPANEDIOL CONCENTRATING CARBON DIOXIDE MECHANISM CARBOXYSOME ETHANOLAMINE SHELL 1 48 2.0E-18 T 11-10-2018 BED32_10935 ff8d9583ddb087195331123c8f50cab8 79 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 6.6E-19 T 11-10-2018 IPR010710 Protein of unknown function DUF1289 BED32_14765 4925a0bddbf2b8231f164830223cfcaa 220 Pfam PF09335 SNARE associated Golgi protein 49 176 4.5E-26 T 11-10-2018 IPR032816 SNARE associated Golgi protein BED32_09885 0774c8099f26051f8c9471ffc0033bcf 401 Hamap MF_01529 Multidrug resistance protein MdtH [mdtH]. 1 401 40.693 T 11-10-2018 IPR022855 Multidrug resistance protein MdtH BED32_09885 0774c8099f26051f8c9471ffc0033bcf 401 Pfam PF07690 Major Facilitator Superfamily 20 237 3.0E-23 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_09885 0774c8099f26051f8c9471ffc0033bcf 401 Gene3D G3DSA:1.20.1250.20 13 386 2.6E-48 T 11-10-2018 BED32_09885 0774c8099f26051f8c9471ffc0033bcf 401 SUPERFAMILY SSF103473 14 392 1.1E-53 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 127 40.288 T 11-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 Gene3D G3DSA:2.40.50.100 2 128 8.0E-51 T 11-10-2018 BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 Pfam PF01597 Glycine cleavage H-protein 8 127 1.7E-46 T 11-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 SUPERFAMILY SSF51230 4 127 5.13E-44 T 11-10-2018 IPR011053 Single hybrid motif BED32_17485 72160898cfefd4b90eb81b0a069a10ab 128 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 127 5.7E-55 T 11-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 BED32_21410 5330852fe23802c941bd62133cad0f64 153 SMART SM00344 7 114 6.7E-44 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 BED32_21410 5330852fe23802c941bd62133cad0f64 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.5E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain BED32_21410 5330852fe23802c941bd62133cad0f64 153 Pfam PF13404 AsnC-type helix-turn-helix domain 7 48 8.9E-15 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_21410 5330852fe23802c941bd62133cad0f64 153 Gene3D G3DSA:1.10.10.10 3 57 1.0E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_21410 5330852fe23802c941bd62133cad0f64 153 SUPERFAMILY SSF54909 68 153 2.15E-19 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_21410 5330852fe23802c941bd62133cad0f64 153 SUPERFAMILY SSF46785 5 67 7.93E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_21410 5330852fe23802c941bd62133cad0f64 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site BED32_21410 5330852fe23802c941bd62133cad0f64 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 3.4E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_21410 5330852fe23802c941bd62133cad0f64 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 3.4E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_21410 5330852fe23802c941bd62133cad0f64 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 3.4E-14 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 BED32_21410 5330852fe23802c941bd62133cad0f64 153 Gene3D G3DSA:3.30.70.920 59 141 9.0E-36 T 11-10-2018 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 Pfam PF00072 Response regulator receiver domain 3 102 1.2E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 Pfam PF04397 LytTr DNA-binding domain 138 234 1.5E-29 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 Gene3D G3DSA:3.40.50.2300 1 124 1.1E-25 T 11-10-2018 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 SMART SM00850 137 235 5.6E-33 T 11-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 Gene3D G3DSA:2.40.50.40 129 196 3.0E-17 T 11-10-2018 BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 SUPERFAMILY SSF52172 9 122 3.42E-22 T 11-10-2018 IPR011006 CheY-like superfamily BED32_15225 06caf9f1a86bb73bcaf554e1794ddefd 236 SMART SM00448 1 102 2.2E-9 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 SMART SM00382 41 239 9.8E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 Gene3D G3DSA:3.40.50.300 14 268 6.2E-67 T 11-10-2018 BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 Pfam PF00005 ABC transporter 33 189 4.8E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 PIRSF PIRSF037116 4 268 3.7E-141 T 11-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 TIGRFAM TIGR02323 CP_lyasePhnK: phosphonate C-P lyase system protein PhnK 15 266 8.4E-119 T 11-10-2018 IPR012700 Phosphonate C-P lyase system, PhnK BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 SUPERFAMILY SSF52540 11 264 2.41E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18755 1d89ad394f1bc5909f980ea30a2fa24a 268 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_17565 a711591ee52784ad46493285ed019d09 505 Gene3D G3DSA:1.10.3210.10 1 158 4.8E-44 T 11-10-2018 BED32_17565 a711591ee52784ad46493285ed019d09 505 Pfam PF13286 Phosphohydrolase-associated domain 441 500 6.8E-6 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain BED32_17565 a711591ee52784ad46493285ed019d09 505 Pfam PF01966 HD domain 66 134 2.4E-10 T 11-10-2018 IPR006674 HD domain BED32_17565 a711591ee52784ad46493285ed019d09 505 Gene3D G3DSA:1.10.3410.10 263 390 5.2E-22 T 11-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 BED32_17565 a711591ee52784ad46493285ed019d09 505 Gene3D G3DSA:1.10.3210.10 159 262 4.5E-14 T 11-10-2018 BED32_17565 a711591ee52784ad46493285ed019d09 505 SUPERFAMILY SSF109604 30 502 2.46E-63 T 11-10-2018 BED32_17565 a711591ee52784ad46493285ed019d09 505 Hamap MF_00030 Deoxyguanosinetriphosphate triphosphohydrolase [dgt]. 1 505 52.514 T 11-10-2018 IPR020779 dNTP triphosphohydrolase, type 1 GO:0000287|GO:0006203|GO:0008832 KEGG: 00230+3.1.5.1 BED32_17565 a711591ee52784ad46493285ed019d09 505 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 31 503 8.9E-125 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 BED32_17565 a711591ee52784ad46493285ed019d09 505 SMART SM00471 62 282 1.9E-11 T 11-10-2018 IPR003607 HD/PDEase domain BED32_12045 9b3abff6f85bea4b5c6d4ffc05b78e75 180 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 178 8.3E-71 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 BED32_12045 9b3abff6f85bea4b5c6d4ffc05b78e75 180 Pfam PF04279 Intracellular septation protein A 1 175 1.7E-71 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 BED32_12045 9b3abff6f85bea4b5c6d4ffc05b78e75 180 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 19.622 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 BED32_00370 dcb405ad17ed21e135af97e3e26b17e9 131 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 22 115 2.0E-12 T 11-10-2018 IPR039366 YscW/ExsB BED32_00370 dcb405ad17ed21e135af97e3e26b17e9 131 TIGRFAM TIGR02567 YscW: type III secretion system chaperone YscW 6 125 1.1E-50 T 11-10-2018 IPR013400 Type III secretion system chaperone, YscW BED32_00370 dcb405ad17ed21e135af97e3e26b17e9 131 Gene3D G3DSA:2.60.40.2990 14 131 2.1E-39 T 11-10-2018 BED32_12835 b7778e5841860974521a80ff8afd9a5f 181 Pfam PF03498 Cytolethal distending toxin A/C domain 35 171 3.6E-16 T 11-10-2018 IPR003558 Cytolethal distending toxin A/C GO:0009405 BED32_12835 b7778e5841860974521a80ff8afd9a5f 181 SUPERFAMILY SSF50370 40 171 1.07E-17 T 11-10-2018 IPR035992 Ricin B-like lectins BED32_12835 b7778e5841860974521a80ff8afd9a5f 181 Gene3D G3DSA:2.80.10.50 21 174 3.0E-30 T 11-10-2018 BED32_08315 0b84f81574642f7742866d273385d2f1 186 SMART SM00554 74 186 4.9E-22 T 11-10-2018 IPR000782 FAS1 domain BED32_08315 0b84f81574642f7742866d273385d2f1 186 SUPERFAMILY SSF82153 39 185 1.44E-37 T 11-10-2018 IPR036378 FAS1 domain superfamily BED32_08315 0b84f81574642f7742866d273385d2f1 186 Gene3D G3DSA:2.30.180.10 38 186 1.2E-42 T 11-10-2018 IPR036378 FAS1 domain superfamily BED32_08315 0b84f81574642f7742866d273385d2f1 186 Pfam PF02469 Fasciclin domain 50 185 1.3E-30 T 11-10-2018 IPR000782 FAS1 domain BED32_07140 5a6a7d569f8144b50dd5147b35058316 268 Pfam PF02498 BRO family, N-terminal domain 48 134 1.4E-8 T 11-10-2018 IPR003497 BRO N-terminal domain BED32_07140 5a6a7d569f8144b50dd5147b35058316 268 SMART SM01040 43 139 2.3E-11 T 11-10-2018 IPR003497 BRO N-terminal domain BED32_08515 46da37448bb1d53a3f5ccd26b8021753 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 237 261 4.1E-10 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08515 46da37448bb1d53a3f5ccd26b8021753 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 388 414 4.1E-10 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08515 46da37448bb1d53a3f5ccd26b8021753 675 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 168 192 4.1E-10 T 11-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08515 46da37448bb1d53a3f5ccd26b8021753 675 Pfam PF00361 Proton-conducting membrane transporter 135 419 3.1E-57 T 11-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 PIRSF PIRSF002756 1 338 1.8E-105 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 29 335 1.8E-127 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 Pfam PF12849 PBP superfamily domain 23 306 9.6E-61 T 11-10-2018 IPR024370 PBP domain BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 Gene3D G3DSA:3.40.190.10 103 278 8.6E-129 T 11-10-2018 BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 Gene3D G3DSA:3.40.190.10 29 326 8.6E-129 T 11-10-2018 BED32_21485 ec4a2276ab1ff5cba4ab50555705cb8e 346 SUPERFAMILY SSF53850 28 339 8.28E-95 T 11-10-2018 BED32_13180 1980500535988c40e6686fc943992042 317 Gene3D G3DSA:3.40.47.10 1 317 3.6E-123 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13180 1980500535988c40e6686fc943992042 317 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 317 2.6E-145 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BED32_13180 1980500535988c40e6686fc943992042 317 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 1.0E-29 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BED32_13180 1980500535988c40e6686fc943992042 317 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 228 316 4.9E-36 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BED32_13180 1980500535988c40e6686fc943992042 317 SUPERFAMILY SSF53901 4 317 2.88E-70 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 BED32_13180 1980500535988c40e6686fc943992042 317 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 317 69.649 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 65 168 6.0E-22 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 Pfam PF00593 TonB dependent receptor 258 708 5.9E-54 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 Gene3D G3DSA:2.40.170.20 178 710 1.0E-120 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 65 710 4.5E-184 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 693 710 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 SUPERFAMILY SSF56935 54 710 1.8E-134 T 11-10-2018 BED32_19470 f1f7158cd4a66303121519c5f66ae29e 710 Gene3D G3DSA:2.170.130.10 40 177 2.7E-35 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily BED32_14795 d45020d8b5b19156958f0b965ea39b0d 347 Pfam PF00892 EamA-like transporter family 176 327 2.1E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_14795 d45020d8b5b19156958f0b965ea39b0d 347 Pfam PF00892 EamA-like transporter family 28 162 1.3E-17 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_14795 d45020d8b5b19156958f0b965ea39b0d 347 SUPERFAMILY SSF103481 67 162 1.57E-10 T 11-10-2018 BED32_14795 d45020d8b5b19156958f0b965ea39b0d 347 SUPERFAMILY SSF103481 244 331 1.31E-15 T 11-10-2018 BED32_04600 823c731c15d5c23141648938f5660c78 171 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 1 167 35.485 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BED32_04600 823c731c15d5c23141648938f5660c78 171 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 1 163 3.7E-77 T 11-10-2018 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 BED32_04600 823c731c15d5c23141648938f5660c78 171 Gene3D G3DSA:3.40.50.300 1 170 1.5E-68 T 11-10-2018 BED32_04600 823c731c15d5c23141648938f5660c78 171 SUPERFAMILY SSF52540 1 161 2.24E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04600 823c731c15d5c23141648938f5660c78 171 Pfam PF01583 Adenylylsulphate kinase 1 149 1.5E-71 T 11-10-2018 BED32_21400 be9310f27ff84738e19ac15a73ac2fce 223 Pfam PF07077 Protein of unknown function (DUF1345) 39 213 6.9E-55 T 11-10-2018 IPR009781 Protein of unknown function DUF1345 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 Gene3D G3DSA:3.10.105.10 298 513 3.4E-192 T 11-10-2018 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 Gene3D G3DSA:3.40.190.10 43 525 3.4E-192 T 11-10-2018 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 Gene3D G3DSA:3.90.76.10 72 195 3.4E-192 T 11-10-2018 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 PIRSF PIRSF002741 8 545 6.1E-107 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 SUPERFAMILY SSF53850 39 526 4.95E-140 T 11-10-2018 BED32_12110 3aee3e9d99ce86b3a33537a4d497b5c1 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 464 1.0E-82 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 22 505 40.842 T 11-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 Pfam PF01435 Peptidase family M48 92 279 2.8E-28 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 Pfam PF14559 Tetratricopeptide repeat 374 439 3.2E-8 T 11-10-2018 BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 SUPERFAMILY SSF48452 333 447 9.22E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 Gene3D G3DSA:1.25.40.10 273 506 1.1E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15660 4f4e90ae0e11a58ee1c069f42f084426 508 Gene3D G3DSA:3.30.2010.10 96 171 1.4E-6 T 11-10-2018 BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 8 189 8.3E-28 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 Gene3D G3DSA:3.10.610.10 39 142 2.2E-6 T 11-10-2018 BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 Pfam PF11612 Type II secretion system (T2SS), protein J 59 188 2.8E-13 T 11-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 7 27 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 SUPERFAMILY SSF54523 43 195 9.42E-33 T 11-10-2018 BED32_17190 469b390d9e5a0d43bbf28747e51eed39 197 Gene3D G3DSA:2.10.70.20 147 194 6.6E-8 T 11-10-2018 BED32_02890 2338c98c52d95ce88eeccc622e0280b7 128 Gene3D G3DSA:3.30.1330.40 1 128 1.9E-47 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BED32_02890 2338c98c52d95ce88eeccc622e0280b7 128 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 126 1.8E-52 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 BED32_02890 2338c98c52d95ce88eeccc622e0280b7 128 Pfam PF01042 Endoribonuclease L-PSP 8 126 3.2E-43 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BED32_02890 2338c98c52d95ce88eeccc622e0280b7 128 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 103 121 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 BED32_02890 2338c98c52d95ce88eeccc622e0280b7 128 SUPERFAMILY SSF55298 4 127 5.03E-43 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 Pfam PF07690 Major Facilitator Superfamily 37 261 2.8E-29 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 Pfam PF07690 Major Facilitator Superfamily 296 466 1.4E-12 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 Gene3D G3DSA:1.20.1250.20 28 263 2.4E-44 T 11-10-2018 BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 Hamap MF_01238 Sialic acid transporter NanT [nanT]. 13 508 49.765 T 11-10-2018 IPR004742 Sialic acid transporter GO:0015136|GO:0015739|GO:0016021 BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 SUPERFAMILY SSF103473 12 467 3.92E-70 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_15410 19cd5d80227b3f17b4a0fc3d34c987e6 508 Gene3D G3DSA:1.20.1250.20 288 471 7.3E-21 T 11-10-2018 BED32_15895 77ef6302a8d3d71db5ca7b4e6b01897f 445 Pfam PF00589 Phage integrase family 276 429 5.2E-6 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_15895 77ef6302a8d3d71db5ca7b4e6b01897f 445 SUPERFAMILY SSF56349 125 433 2.44E-28 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_15895 77ef6302a8d3d71db5ca7b4e6b01897f 445 Gene3D G3DSA:1.10.443.10 255 438 4.4E-19 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_14490 3a28bc214e373ce311fde28aa34b9fab 448 SUPERFAMILY SSF56322 17 436 2.22E-97 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_14490 3a28bc214e373ce311fde28aa34b9fab 448 Pfam PF00425 chorismate binding enzyme 179 428 2.2E-63 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal BED32_14490 3a28bc214e373ce311fde28aa34b9fab 448 Gene3D G3DSA:3.60.120.10 1 441 5.6E-154 T 11-10-2018 IPR005801 ADC synthase GO:0009058 BED32_14490 3a28bc214e373ce311fde28aa34b9fab 448 Hamap MF_01935 Isochorismate synthase MenF [menF]. 1 438 28.833 T 11-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 BED32_14490 3a28bc214e373ce311fde28aa34b9fab 448 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 87 435 1.1E-103 T 11-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 15 239 2.4E-43 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 200 2.3E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 PRINTS PR00987 Glutamyl-tRNA synthetase signature 29 40 2.3E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 PRINTS PR00987 Glutamyl-tRNA synthetase signature 176 186 2.3E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 PRINTS PR00987 Glutamyl-tRNA synthetase signature 44 57 2.3E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 PRINTS PR00987 Glutamyl-tRNA synthetase signature 15 27 2.3E-14 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 SUPERFAMILY SSF52374 12 290 2.79E-85 T 11-10-2018 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 Gene3D G3DSA:3.40.50.620 12 290 7.7E-110 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 Gene3D G3DSA:3.40.50.620 87 224 7.7E-110 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 12 268 6.7E-111 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 BED32_17645 c10bd55de172f9148ab68d5f2f99b956 309 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 12 296 40.771 T 11-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 BED32_14205 85693a345be11f46f6f9477e37d1d230 413 Gene3D G3DSA:1.20.1720.10 24 403 5.0E-102 T 11-10-2018 BED32_14205 85693a345be11f46f6f9477e37d1d230 413 SUPERFAMILY SSF103473 14 410 8.89E-72 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_14205 85693a345be11f46f6f9477e37d1d230 413 Pfam PF07690 Major Facilitator Superfamily 29 371 9.3E-47 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_14205 85693a345be11f46f6f9477e37d1d230 413 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 23 403 2.7E-135 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 1 253 2.0E-75 T 11-10-2018 IPR006304 Type III secretion protein SpaR/YscT GO:0016021 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 179 201 3.8E-28 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 201 220 3.8E-28 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 78 97 3.8E-28 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 17 38 3.8E-28 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_19535 644aece41a9e3d99c6e473c6b9c2d28f 264 Pfam PF01311 Bacterial export proteins, family 1 10 240 2.8E-51 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_02155 083b79217e8246c83c69fe5a9a41273f 307 Pfam PF01758 Sodium Bile acid symporter family 36 213 5.1E-41 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 BED32_02155 083b79217e8246c83c69fe5a9a41273f 307 Gene3D G3DSA:1.20.1530.20 1 307 1.2E-121 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily BED32_02205 83d22fa95e3d9536eb81359c06ee918a 305 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 74 205 1.4E-51 T 11-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 BED32_07890 aeebdfc3df43cc37ece59098dc8cbeaf 119 SUPERFAMILY SSF47413 5 54 4.3E-5 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_06490 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 119 196 1.5E-9 T 11-10-2018 IPR007757 MT-A70-like BED32_06490 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 4 91 1.0E-13 T 11-10-2018 IPR007757 MT-A70-like BED32_06490 206c742e4928b19c8c0bb3fa9f06c015 211 SUPERFAMILY SSF53335 4 92 1.54E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_05240 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 119 196 1.5E-9 T 11-10-2018 IPR007757 MT-A70-like BED32_05240 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 4 91 1.0E-13 T 11-10-2018 IPR007757 MT-A70-like BED32_05240 206c742e4928b19c8c0bb3fa9f06c015 211 SUPERFAMILY SSF53335 4 92 1.54E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_06830 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 119 196 1.5E-9 T 11-10-2018 IPR007757 MT-A70-like BED32_06830 206c742e4928b19c8c0bb3fa9f06c015 211 Pfam PF05063 MT-A70 4 91 1.0E-13 T 11-10-2018 IPR007757 MT-A70-like BED32_06830 206c742e4928b19c8c0bb3fa9f06c015 211 SUPERFAMILY SSF53335 4 92 1.54E-6 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_00865 69b869816250d9993a982f1139b49de8 88 Pfam PF13953 PapC C-terminal domain 7 70 6.7E-20 T 11-10-2018 IPR025949 PapC-like, C-terminal domain BED32_00865 69b869816250d9993a982f1139b49de8 88 Gene3D G3DSA:2.60.40.2070 5 88 1.1E-20 T 11-10-2018 BED32_16570 1e6179ad01884c67cd4e74f69cfbad5a 299 Gene3D G3DSA:1.10.10.60 188 240 5.4E-8 T 11-10-2018 BED32_16570 1e6179ad01884c67cd4e74f69cfbad5a 299 Gene3D G3DSA:1.10.10.60 241 296 9.0E-18 T 11-10-2018 BED32_16570 1e6179ad01884c67cd4e74f69cfbad5a 299 SMART SM00342 207 290 6.9E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_16570 1e6179ad01884c67cd4e74f69cfbad5a 299 Pfam PF12833 Helix-turn-helix domain 213 291 2.6E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_16570 1e6179ad01884c67cd4e74f69cfbad5a 299 SUPERFAMILY SSF46689 243 293 1.21E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 Gene3D G3DSA:3.40.50.300 105 384 5.8E-51 T 11-10-2018 BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 Pfam PF13614 AAA domain 108 285 1.7E-27 T 11-10-2018 IPR025669 AAA domain BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 SUPERFAMILY SSF46955 40 93 2.06E-7 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 Gene3D G3DSA:1.10.1660.10 31 97 4.8E-7 T 11-10-2018 BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 Pfam PF00376 MerR family regulatory protein 41 69 5.7E-9 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 BED32_00250 6c991e0502b05278d81ea746fbdc75e6 388 SUPERFAMILY SSF52540 103 350 8.39E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 Pfam PF04792 V antigen (LcrV) protein 1 325 3.3E-185 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 281 300 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 178 201 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 300 322 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 237 257 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 259 280 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 108 126 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 130 150 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 33 58 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 PRINTS PR01592 Low calcium response V antigen signature 153 175 3.1E-123 T 11-10-2018 IPR005413 Low calcium response V antigen GO:0005576|GO:0009405 BED32_00455 dffee2b8ac8c9e45a5f9fb99cd70e073 326 SUPERFAMILY SSF103388 29 323 6.02E-123 T 11-10-2018 IPR036139 Virulence-associated V antigen superfamily GO:0005576|GO:0009405 BED32_04340 5ba2db9a8f7898d3cec7fd6ad11d9d76 184 Pfam PF02325 YGGT family 10 76 3.4E-21 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 BED32_04340 5ba2db9a8f7898d3cec7fd6ad11d9d76 184 Pfam PF02325 YGGT family 108 171 6.0E-19 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 BED32_09090 c76b23bda742dba0111daee93ae85ca9 1246 Pfam PF06744 Type VI secretion protein IcmF C-terminal 993 1184 1.1E-43 T 11-10-2018 IPR010623 Type VI secretion system IcmF, C-terminal BED32_09090 c76b23bda742dba0111daee93ae85ca9 1246 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 41 1236 2.2E-240 T 11-10-2018 IPR017731 Type VI secretion system, IcmF BED32_09090 c76b23bda742dba0111daee93ae85ca9 1246 SUPERFAMILY SSF52540 150 353 1.58E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_09090 c76b23bda742dba0111daee93ae85ca9 1246 Pfam PF14331 ImcF-related N-terminal domain 222 503 4.2E-72 T 11-10-2018 IPR025743 ImcF-related, N-terminal domain BED32_09090 c76b23bda742dba0111daee93ae85ca9 1246 Pfam PF06761 Intracellular multiplication and human macrophage-killing 554 866 3.8E-67 T 11-10-2018 IPR009612 ImcF-related BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 Pfam PF03330 Lytic transglycolase 76 164 3.0E-25 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 78 177 4.5E-36 T 11-10-2018 IPR012997 Rare lipoprotein A BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 SUPERFAMILY SSF110997 290 362 2.35E-14 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 Gene3D G3DSA:2.40.40.10 75 167 9.2E-33 T 11-10-2018 IPR036908 RlpA-like domain superfamily BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 Gene3D G3DSA:3.30.70.1070 292 363 1.2E-11 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 Pfam PF05036 Sporulation related domain 290 362 1.9E-14 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 16 166 23.112 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 BED32_07405 43d5c210b1b04432325ef386875ac5b7 365 SUPERFAMILY SSF50685 76 164 6.98E-9 T 11-10-2018 IPR036908 RlpA-like domain superfamily BED32_17850 884688faaf126faae6ec69182879e2d1 306 Gene3D G3DSA:3.30.1700.10 129 306 9.2E-76 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BED32_17850 884688faaf126faae6ec69182879e2d1 306 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 8.6E-109 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BED32_17850 884688faaf126faae6ec69182879e2d1 306 SUPERFAMILY SSF54211 134 278 1.44E-54 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_17850 884688faaf126faae6ec69182879e2d1 306 Gene3D G3DSA:3.30.230.20 1 128 5.3E-52 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BED32_17850 884688faaf126faae6ec69182879e2d1 306 SUPERFAMILY SSF54211 3 124 1.06E-41 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_17850 884688faaf126faae6ec69182879e2d1 306 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 300 6.0E-159 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BED32_17850 884688faaf126faae6ec69182879e2d1 306 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.115 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 BED32_00305 833bc72fbd5cb36afaa9bd61f19da4ce 212 SUPERFAMILY SSF160527 102 200 1.15E-5 T 11-10-2018 BED32_00305 833bc72fbd5cb36afaa9bd61f19da4ce 212 TIGRFAM TIGR02499 HrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family 19 187 2.9E-48 T 11-10-2018 IPR012842 Type III secretion system HrpE/YscL BED32_00305 833bc72fbd5cb36afaa9bd61f19da4ce 212 Pfam PF02108 Flagellar assembly protein FliH 74 194 3.1E-19 T 11-10-2018 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 Pfam PF01311 Bacterial export proteins, family 1 13 245 1.5E-56 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 1.2E-17 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 1.2E-17 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 1.2E-17 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 1.2E-17 T 11-10-2018 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 BED32_03805 58a98bb71b103c386ea0daa4dd1cc169 257 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 253 1.8E-50 T 11-10-2018 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 BED32_02980 37bb6f90203cf83159c027b5b2781354 113 Pfam PF13466 STAS domain 14 90 1.2E-19 T 11-10-2018 IPR002645 STAS domain BED32_02980 37bb6f90203cf83159c027b5b2781354 113 Gene3D G3DSA:3.30.750.24 6 100 3.4E-13 T 11-10-2018 IPR036513 STAS domain superfamily BED32_02980 37bb6f90203cf83159c027b5b2781354 113 SUPERFAMILY SSF52091 6 96 1.84E-17 T 11-10-2018 IPR036513 STAS domain superfamily BED32_17125 c2b5da37f73efe960440949470fe4b34 317 SUPERFAMILY SSF53850 95 298 2.33E-37 T 11-10-2018 BED32_17125 c2b5da37f73efe960440949470fe4b34 317 Gene3D G3DSA:3.40.190.290 96 305 3.5E-34 T 11-10-2018 BED32_17125 c2b5da37f73efe960440949470fe4b34 317 SUPERFAMILY SSF46785 3 84 1.14E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_17125 c2b5da37f73efe960440949470fe4b34 317 Gene3D G3DSA:1.10.10.10 4 95 3.3E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17125 c2b5da37f73efe960440949470fe4b34 317 Pfam PF03466 LysR substrate binding domain 93 297 1.0E-36 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_17125 c2b5da37f73efe960440949470fe4b34 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 4.7E-14 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_13385 ebbd1601f15d0b6d5a2d56457fe17bac 188 SUPERFAMILY SSF48695 13 177 6.46E-25 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily BED32_13385 ebbd1601f15d0b6d5a2d56457fe17bac 188 Gene3D G3DSA:1.10.1130.10 23 144 9.5E-7 T 11-10-2018 BED32_13385 ebbd1601f15d0b6d5a2d56457fe17bac 188 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 38 179 1.4E-56 T 11-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 BED32_13385 ebbd1601f15d0b6d5a2d56457fe17bac 188 Pfam PF13435 Cytochrome c554 and c-prime 44 85 0.023 T 11-10-2018 IPR023155 Cytochrome c-552/4 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 Gene3D G3DSA:1.10.287.480 184 232 1.7E-23 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 Pfam PF01430 Hsp33 protein 10 280 5.1E-87 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 Hamap MF_00117 33 kDa chaperonin [hslO]. 9 291 32.924 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 SUPERFAMILY SSF64397 9 239 1.96E-74 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 SUPERFAMILY SSF118352 232 288 2.62E-20 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 PIRSF PIRSF005261 1 291 1.3E-75 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 Gene3D G3DSA:3.90.1280.10 233 291 1.4E-23 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 BED32_01565 fec1befe765b9230b926d3bdc5cd17aa 299 Gene3D G3DSA:3.55.30.10 5 183 5.0E-66 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 BED32_20800 88c8a46d1fa0d9507bb465d77331032c 417 Pfam PF00155 Aminotransferase class I and II 67 391 5.5E-22 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_20800 88c8a46d1fa0d9507bb465d77331032c 417 Gene3D G3DSA:3.40.640.10 1 414 1.4E-146 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_20800 88c8a46d1fa0d9507bb465d77331032c 417 SUPERFAMILY SSF53383 13 408 8.39E-61 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_18815 50ce31433c3eb399b3a75b48f8b992c2 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 90 291 4.9E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_18815 50ce31433c3eb399b3a75b48f8b992c2 294 Gene3D G3DSA:1.10.3720.10 51 293 9.2E-69 T 11-10-2018 IPR035906 MetI-like superfamily BED32_18815 50ce31433c3eb399b3a75b48f8b992c2 294 SUPERFAMILY SSF161098 55 282 3.4E-58 T 11-10-2018 IPR035906 MetI-like superfamily BED32_15940 e763a9f86a879723c248ce856dbed5f3 458 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 7 443 30.404 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BED32_15940 e763a9f86a879723c248ce856dbed5f3 458 Pfam PF02601 Exonuclease VII, large subunit 126 440 1.9E-101 T 11-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 BED32_15940 e763a9f86a879723c248ce856dbed5f3 458 Pfam PF13742 OB-fold nucleic acid binding domain 10 103 1.4E-32 T 11-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 BED32_15940 e763a9f86a879723c248ce856dbed5f3 458 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 11 359 6.2E-136 T 11-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 1.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 1.3E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 SUPERFAMILY SSF46689 190 238 3.32E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 Gene3D G3DSA:1.10.10.60 188 235 6.7E-15 T 11-10-2018 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 Gene3D G3DSA:1.10.10.60 236 290 1.6E-15 T 11-10-2018 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 Pfam PF12833 Helix-turn-helix domain 210 289 4.8E-21 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 SUPERFAMILY SSF46689 241 289 1.08E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_12860 3cf81f246a25649b944f21f51ab5193f 291 SMART SM00342 204 287 1.7E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_19770 c6e3053b38961219d451985429a4d0ec 196 Pfam PF04222 Protein of unknown function (DUF416) 5 193 3.1E-77 T 11-10-2018 IPR007338 Protein of unknown function DUF416 BED32_19770 c6e3053b38961219d451985429a4d0ec 196 Gene3D G3DSA:1.20.1590.10 3 194 2.6E-64 T 11-10-2018 IPR023381 YP001051499.1-like domain superfamily BED32_10480 f8867cbd7a37a607e7833999e1483cde 182 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 1 162 1.1E-35 T 11-10-2018 IPR007404 LexA-binding, inner membrane-associated putative hydrolase BED32_10480 f8867cbd7a37a607e7833999e1483cde 182 PIRSF PIRSF030780 1 182 5.2E-104 T 11-10-2018 IPR016956 Inner membrane protein YdjM BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 Gene3D G3DSA:3.30.420.40 186 368 4.7E-42 T 11-10-2018 BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 7 188 2.3E-43 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 SUPERFAMILY SSF53067 9 191 6.22E-39 T 11-10-2018 BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 SUPERFAMILY SSF53067 190 366 6.48E-33 T 11-10-2018 BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 198 365 1.4E-21 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 BED32_09380 68130012907fdaa60ffcc06f34a3779d 368 Gene3D G3DSA:3.30.420.40 3 185 3.6E-45 T 11-10-2018 BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 Gene3D G3DSA:3.30.70.100 231 328 4.9E-14 T 11-10-2018 BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 Gene3D G3DSA:2.30.30.60 178 228 2.2E-8 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 Pfam PF00924 Mechanosensitive ion channel 121 323 2.2E-57 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 SUPERFAMILY SSF82861 78 160 4.32E-10 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 SUPERFAMILY SSF82689 231 335 5.36E-17 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 BED32_10355 b38aad7f8082652fc35fa21fbbadf509 346 SUPERFAMILY SSF50182 162 228 1.34E-17 T 11-10-2018 IPR010920 LSM domain superfamily BED32_12330 aa4ac63a6d10fd9821f7f532ca431b20 67 Gene3D G3DSA:1.20.1180.10 13 67 3.4E-8 T 11-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 BED32_01745 af70cc21160b4278d805e0d90b0e3a5c 200 Pfam PF01810 LysE type translocator 16 189 1.1E-15 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_06375 a0517957cb34251d52bbb3a6d582a745 410 Pfam PF07690 Major Facilitator Superfamily 36 370 3.0E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_06375 a0517957cb34251d52bbb3a6d582a745 410 ProSitePatterns PS00216 Sugar transport proteins signature 1. 288 304 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 BED32_06375 a0517957cb34251d52bbb3a6d582a745 410 Gene3D G3DSA:1.20.1250.20 222 410 4.1E-21 T 11-10-2018 BED32_06375 a0517957cb34251d52bbb3a6d582a745 410 Gene3D G3DSA:1.20.1250.20 14 212 1.3E-22 T 11-10-2018 BED32_06375 a0517957cb34251d52bbb3a6d582a745 410 SUPERFAMILY SSF103473 16 405 1.44E-59 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17040 b1b8b30f907f0207640d951f643f1263 128 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 19 39 - T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17040 b1b8b30f907f0207640d951f643f1263 128 Pfam PF12528 Type II secretion prepilin peptidase dependent protein C 43 123 8.0E-20 T 11-10-2018 IPR022204 Prepilin peptidase dependent protein C BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 Gene3D G3DSA:2.60.40.10 404 517 4.8E-49 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 SUPERFAMILY SSF81296 403 516 1.68E-33 T 11-10-2018 IPR014756 Immunoglobulin E-set BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 PIRSF PIRSF006281 3 517 4.5E-240 T 11-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 5 515 61.789 T 11-10-2018 IPR023704 Glucan biosynthesis protein G BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 29 513 7.4E-197 T 11-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 Gene3D G3DSA:2.70.98.10 28 403 3.3E-169 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 BED32_13315 2f14db4b1fc248063986dcff5ae2e8fd 517 SUPERFAMILY SSF74650 29 400 7.22E-165 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 BED32_18210 1b5d1d02dc70209ff5ec273b5b8f8259 258 Pfam PF03883 Peroxide stress protein YaaA 1 242 3.6E-92 T 11-10-2018 IPR005583 Peroxide stress protein YaaA BED32_18210 1b5d1d02dc70209ff5ec273b5b8f8259 258 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.107 T 11-10-2018 IPR005583 Peroxide stress protein YaaA BED32_11955 89a51b847a3b128f490d3eb19ce78a33 340 Gene3D G3DSA:3.90.226.10 96 292 2.2E-42 T 11-10-2018 BED32_11955 89a51b847a3b128f490d3eb19ce78a33 340 Pfam PF08496 Peptidase family S49 N-terminal 1 149 1.6E-55 T 11-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 BED32_11955 89a51b847a3b128f490d3eb19ce78a33 340 SUPERFAMILY SSF52096 88 290 1.61E-30 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_11955 89a51b847a3b128f490d3eb19ce78a33 340 Gene3D G3DSA:3.40.1750.20 193 257 2.2E-42 T 11-10-2018 BED32_11955 89a51b847a3b128f490d3eb19ce78a33 340 Pfam PF01343 Peptidase family S49 153 296 4.8E-45 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 Gene3D G3DSA:3.40.190.10 167 265 7.0E-14 T 11-10-2018 BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 Gene3D G3DSA:1.10.10.10 4 89 8.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 Pfam PF03466 LysR substrate binding domain 88 291 5.8E-27 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 Gene3D G3DSA:3.40.190.10 110 280 7.0E-14 T 11-10-2018 BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 SUPERFAMILY SSF53850 89 292 3.08E-30 T 11-10-2018 BED32_10880 82a94e509eabe89514a4a1362ca477c5 312 SUPERFAMILY SSF46785 7 88 2.52E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 Pfam PF03170 Bacterial cellulose synthase subunit 60 667 1.6E-220 T 11-10-2018 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 Gene3D G3DSA:2.60.120.260 59 190 5.1E-27 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 300 321 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 383 404 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 219 242 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 516 535 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 87 108 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 706 726 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 136 159 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 553 573 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 PRINTS PR01440 Cellulose synthase subunit B signature 177 198 4.6E-33 T 11-10-2018 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 BED32_01035 3c14a19e2498e0a10c3a047c206aa773 767 Gene3D G3DSA:2.60.120.260 349 508 4.1E-24 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 SUPERFAMILY SSF141130 28 327 2.09E-86 T 11-10-2018 BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 Gene3D G3DSA:3.10.28.20 249 329 6.4E-15 T 11-10-2018 BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 Gene3D G3DSA:2.60.120.580 152 247 5.5E-28 T 11-10-2018 BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 Gene3D G3DSA:2.60.120.580 17 135 2.2E-19 T 11-10-2018 BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 Pfam PF03069 Acetamidase/Formamidase family 182 313 3.7E-24 T 11-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 BED32_04830 b0bcef10646cc4dc12922f8ced8482ac 329 Pfam PF03069 Acetamidase/Formamidase family 31 177 2.3E-9 T 11-10-2018 IPR004304 Acetamidase/Formamidase GO:0016811 BED32_13710 f8eb804437a4770fdf02cab7cd50f8da 382 Gene3D G3DSA:1.20.1250.20 196 378 4.4E-19 T 11-10-2018 BED32_13710 f8eb804437a4770fdf02cab7cd50f8da 382 Hamap MF_01149 Uncharacterized MFS-type transporter YcaD [ycaD]. 1 382 36.072 T 11-10-2018 IPR023745 MSF-type transporter, YcaD BED32_13710 f8eb804437a4770fdf02cab7cd50f8da 382 Gene3D G3DSA:1.20.1250.20 7 188 1.8E-19 T 11-10-2018 BED32_13710 f8eb804437a4770fdf02cab7cd50f8da 382 SUPERFAMILY SSF103473 6 371 3.79E-42 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_13710 f8eb804437a4770fdf02cab7cd50f8da 382 Pfam PF07690 Major Facilitator Superfamily 11 233 2.5E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_11860 2011348e68d93eb088541147878767fc 248 Pfam PF00455 DeoR C terminal sensor domain 71 226 9.3E-42 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain BED32_11860 2011348e68d93eb088541147878767fc 248 SUPERFAMILY SSF100950 67 227 5.36E-26 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_11860 2011348e68d93eb088541147878767fc 248 Gene3D G3DSA:1.10.10.10 1 52 4.9E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11860 2011348e68d93eb088541147878767fc 248 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 2.3E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_11860 2011348e68d93eb088541147878767fc 248 SMART SM00420 4 56 3.6E-20 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_11860 2011348e68d93eb088541147878767fc 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 BED32_11860 2011348e68d93eb088541147878767fc 248 SMART SM01134 67 227 1.3E-50 T 11-10-2018 BED32_11860 2011348e68d93eb088541147878767fc 248 SUPERFAMILY SSF46785 1 59 3.43E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_11860 2011348e68d93eb088541147878767fc 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 2.4E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_11860 2011348e68d93eb088541147878767fc 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 2.4E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 17 415 4.3E-177 T 11-10-2018 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 SUPERFAMILY SSF53383 15 411 1.79E-122 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 Gene3D G3DSA:3.40.640.10 46 307 2.1E-166 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 Gene3D G3DSA:3.90.1150.10 18 408 2.1E-166 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 Pfam PF00266 Aminotransferase class-V 36 404 9.4E-155 T 11-10-2018 IPR000192 Aminotransferase class V domain BED32_10825 000121de16dd4b82a90ab102d9cb74df 416 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 227 246 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site BED32_20485 001867f2f55f40f8573a0a0a840a55b9 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_20485 001867f2f55f40f8573a0a0a840a55b9 339 Pfam PF01548 Transposase 6 146 4.4E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 Pfam PF00005 ABC transporter 33 187 2.4E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 SMART SM00382 42 235 4.7E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 TIGRFAM TIGR02324 CP_lyasePhnL: phosphonate C-P lyase system protein PhnL 11 232 9.7E-109 T 11-10-2018 IPR012701 Phosphonate C-P lyase system, PhnL KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 Gene3D G3DSA:3.40.50.300 9 236 1.6E-46 T 11-10-2018 BED32_18760 f560bf6addff0d50aac6f6a8d9651adf 244 SUPERFAMILY SSF52540 11 232 2.13E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_06120 edf2f0c9f3cf8bf7788173e23aa00171 567 SUPERFAMILY SSF53850 114 562 4.71E-53 T 11-10-2018 BED32_06120 edf2f0c9f3cf8bf7788173e23aa00171 567 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 118 4.6E-38 T 11-10-2018 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain BED32_06120 edf2f0c9f3cf8bf7788173e23aa00171 567 Gene3D G3DSA:3.40.190.10 116 311 1.8E-25 T 11-10-2018 BED32_06120 edf2f0c9f3cf8bf7788173e23aa00171 567 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 165 351 1.1E-16 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_21315 d85de22ed300cf1a1f822bca5599948e 265 Gene3D G3DSA:3.30.420.10 105 250 1.3E-13 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_21315 d85de22ed300cf1a1f822bca5599948e 265 SUPERFAMILY SSF53098 104 260 1.18E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_21315 d85de22ed300cf1a1f822bca5599948e 265 Pfam PF00665 Integrase core domain 107 219 1.2E-22 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 138 7.6E-22 T 11-10-2018 IPR016188 PurM-like, N-terminal domain BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 4 322 1.8E-116 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 Gene3D G3DSA:3.90.650.10 146 323 1.0E-58 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 Gene3D G3DSA:3.30.1330.10 2 144 2.3E-45 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 299 1.1E-10 T 11-10-2018 IPR010918 PurM-like, C-terminal domain BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 SUPERFAMILY SSF55326 4 138 2.62E-34 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 3 322 29.333 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 PIRSF PIRSF005303 1 322 2.8E-90 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 BED32_05970 fa0eaa6349a660cef6067e88cbdbd2cc 329 SUPERFAMILY SSF56042 143 303 1.0E-40 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily BED32_00435 4663d409d770ff8f6b8b876637656c2e 114 SUPERFAMILY SSF48452 9 111 1.59E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_00435 4663d409d770ff8f6b8b876637656c2e 114 Gene3D G3DSA:1.25.40.10 2 114 1.2E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_00435 4663d409d770ff8f6b8b876637656c2e 114 PIRSF PIRSF017117 3 112 4.5E-45 T 11-10-2018 IPR016684 Type III secretion system chaperone, YscY BED32_07875 6de73973b2e72072be6d177d3df11399 350 Pfam PF00793 DAHP synthetase I family 38 338 2.3E-107 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 BED32_07875 6de73973b2e72072be6d177d3df11399 350 PIRSF PIRSF001361 1 350 8.2E-165 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_07875 6de73973b2e72072be6d177d3df11399 350 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 349 4.8E-177 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 BED32_07875 6de73973b2e72072be6d177d3df11399 350 Gene3D G3DSA:3.20.20.70 1 350 7.7E-171 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_07875 6de73973b2e72072be6d177d3df11399 350 SUPERFAMILY SSF51569 7 348 5.13E-139 T 11-10-2018 BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 Pfam PF13500 AAA domain 9 216 5.3E-35 T 11-10-2018 BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 PIRSF PIRSF006755 6 233 2.0E-81 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 11 181 2.7E-59 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 7 218 29.208 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 SUPERFAMILY SSF52540 8 219 3.56E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07990 18647f1bb2d02f2181f837a00b773c9f 242 Gene3D G3DSA:3.40.50.300 8 235 4.1E-69 T 11-10-2018 BED32_07315 c2879d26b3a3085e163067915c68178c 373 Pfam PF08007 Cupin superfamily protein 10 310 4.5E-101 T 11-10-2018 IPR003347 JmjC domain BED32_07315 c2879d26b3a3085e163067915c68178c 373 SUPERFAMILY SSF51197 6 292 9.75E-74 T 11-10-2018 BED32_07315 c2879d26b3a3085e163067915c68178c 373 Gene3D G3DSA:2.60.120.650 2 204 5.6E-80 T 11-10-2018 BED32_07315 c2879d26b3a3085e163067915c68178c 373 Gene3D G3DSA:1.10.10.2510 205 373 4.5E-58 T 11-10-2018 BED32_07315 c2879d26b3a3085e163067915c68178c 373 SMART SM00558 92 215 1.4E-5 T 11-10-2018 IPR003347 JmjC domain BED32_07630 c3373c12e7c7a828dfab0abc18041611 142 SUPERFAMILY SSF103481 41 141 2.09E-14 T 11-10-2018 BED32_07630 c3373c12e7c7a828dfab0abc18041611 142 Pfam PF00892 EamA-like transporter family 4 140 2.4E-21 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_11015 7a2418c4aa7c491cc519385acd7a5d36 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_11015 7a2418c4aa7c491cc519385acd7a5d36 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_05740 7a2418c4aa7c491cc519385acd7a5d36 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_05740 7a2418c4aa7c491cc519385acd7a5d36 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_20205 5ce9ecf921f181dc66d7f50e6d2439bd 90 Pfam PF06611 Protein of unknown function (DUF1145) 1 58 2.9E-27 T 11-10-2018 IPR009525 Protein of unknown function DUF1145 BED32_06980 c286023a0384ca98904426c047d60153 149 Pfam PF07105 Protein of unknown function (DUF1367) 72 147 6.5E-11 T 11-10-2018 IPR009797 Protein of unknown function DUF1367 BED32_06980 c286023a0384ca98904426c047d60153 149 Pfam PF07105 Protein of unknown function (DUF1367) 2 62 2.0E-10 T 11-10-2018 IPR009797 Protein of unknown function DUF1367 BED32_00990 ae330ff52a1add180c992be54746015f 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 17 69 3.3E-14 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain BED32_00990 ae330ff52a1add180c992be54746015f 300 SUPERFAMILY SSF161098 93 280 1.3E-30 T 11-10-2018 IPR035906 MetI-like superfamily BED32_00990 ae330ff52a1add180c992be54746015f 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 299 4.1E-31 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_00990 ae330ff52a1add180c992be54746015f 300 Gene3D G3DSA:1.10.3720.10 88 295 1.0E-24 T 11-10-2018 IPR035906 MetI-like superfamily BED32_03075 48b55dde7805f970b5e1c91796aa967c 191 SMART SM00749 51 114 8.5E-7 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BED32_03075 48b55dde7805f970b5e1c91796aa967c 191 SMART SM00749 129 190 0.0021 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria BED32_03075 48b55dde7805f970b5e1c91796aa967c 191 Pfam PF04972 BON domain 46 114 2.3E-13 T 11-10-2018 IPR007055 BON domain BED32_03075 48b55dde7805f970b5e1c91796aa967c 191 Pfam PF04972 BON domain 125 190 3.1E-17 T 11-10-2018 IPR007055 BON domain BED32_07450 07b952e4a7745247135a134d4e0aeb9c 160 Pfam PF07295 Zinc-ribbon containing domain 14 157 1.5E-54 T 11-10-2018 IPR009912 Zinc-ribbon containing domain BED32_17815 e0eadb97ebf39f127e81aa637b38e04f 206 Pfam PF01121 Dephospho-CoA kinase 3 177 4.2E-73 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BED32_17815 e0eadb97ebf39f127e81aa637b38e04f 206 Gene3D G3DSA:3.40.50.300 1 205 9.6E-68 T 11-10-2018 BED32_17815 e0eadb97ebf39f127e81aa637b38e04f 206 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 178 1.2E-62 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BED32_17815 e0eadb97ebf39f127e81aa637b38e04f 206 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 27.593 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 BED32_17815 e0eadb97ebf39f127e81aa637b38e04f 206 SUPERFAMILY SSF52540 1 187 1.55E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13570 30361e6f52c75f48ac3d3f7047cd80b0 215 SMART SM00849 12 192 1.9E-41 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_13570 30361e6f52c75f48ac3d3f7047cd80b0 215 SUPERFAMILY SSF56281 2 209 4.98E-60 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_13570 30361e6f52c75f48ac3d3f7047cd80b0 215 Pfam PF00753 Metallo-beta-lactamase superfamily 10 192 3.2E-31 T 11-10-2018 IPR001279 Metallo-beta-lactamase BED32_13570 30361e6f52c75f48ac3d3f7047cd80b0 215 Gene3D G3DSA:3.60.15.10 1 210 1.8E-84 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 SUPERFAMILY SSF53335 1 374 2.27E-64 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 Gene3D G3DSA:3.40.50.150 1 212 2.9E-40 T 11-10-2018 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 Gene3D G3DSA:3.90.120.10 250 366 8.9E-5 T 11-10-2018 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 3 373 5.5E-41 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 Pfam PF00145 C-5 cytosine-specific DNA methylase 1 373 1.3E-44 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 112 126 1.1E-9 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 2 18 1.1E-9 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 BED32_03125 b7d699a1e3a25060da63143b1aa0de45 383 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 157 170 1.1E-9 T 11-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 BED32_00550 8cde5d25f549db41ecba26dde9d3e2a8 310 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 23 306 2.4E-127 T 11-10-2018 BED32_00550 8cde5d25f549db41ecba26dde9d3e2a8 310 PIRSF PIRSF005355 7 310 8.1E-86 T 11-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 BED32_00550 8cde5d25f549db41ecba26dde9d3e2a8 310 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 14 307 21.106 T 11-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 BED32_00550 8cde5d25f549db41ecba26dde9d3e2a8 310 Pfam PF01040 UbiA prenyltransferase family 34 279 1.2E-34 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 BED32_12585 d4f4bfaccae7a49fdd50e4ebe83c676c 150 PIRSF PIRSF029208 1 147 8.7E-60 T 11-10-2018 IPR016912 Bacteriophage P2, GpU BED32_12585 d4f4bfaccae7a49fdd50e4ebe83c676c 150 Pfam PF06995 Phage P2 GpU 6 125 7.9E-43 T 11-10-2018 IPR009734 Myoviridae, GpU BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 455 488 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Gene3D G3DSA:3.30.1370.120 108 179 1.1E-16 T 11-10-2018 IPR038591 NolW-like superfamily BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Gene3D G3DSA:3.55.50.30 22 107 5.7E-27 T 11-10-2018 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 488 507 5.6E-38 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 196 213 5.6E-38 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 397 412 5.6E-38 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 363 382 5.6E-38 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 283 303 5.6E-38 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 36 510 3.1E-185 T 11-10-2018 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Pfam PF03958 Bacterial type II/III secretion system short domain 112 171 4.2E-7 T 11-10-2018 IPR005644 NolW-like BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Pfam PF03958 Bacterial type II/III secretion system short domain 185 280 2.3E-19 T 11-10-2018 IPR005644 NolW-like BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Pfam PF00263 Bacterial type II and III secretion system protein 350 510 2.9E-40 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 BED32_00350 3531cde8abb35a97f9350b7b9dd0babd 607 Gene3D G3DSA:3.30.1370.120 182 281 2.6E-11 T 11-10-2018 IPR038591 NolW-like superfamily BED32_21435 d743bef4d838c087eea3971985d9f65e 274 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 274 15.942 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 42 269 1.7E-43 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 Gene3D G3DSA:1.20.120.220 98 274 1.4E-69 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 PRINTS PR00123 ATP synthase A subunit signature 107 123 3.7E-15 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 PRINTS PR00123 ATP synthase A subunit signature 254 269 3.7E-15 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 PRINTS PR00123 ATP synthase A subunit signature 206 228 3.7E-15 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 Pfam PF00119 ATP synthase A chain 51 268 3.5E-54 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 ProSitePatterns PS00449 ATP synthase a subunit signature. 209 218 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_21435 d743bef4d838c087eea3971985d9f65e 274 SUPERFAMILY SSF81336 98 268 1.96E-48 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 BED32_20155 deff0c70bc6d92f148c1f539561c6b06 308 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 292 5.5E-63 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_21885 f0862e894dff71288e860c321fef560e 262 Pfam PF06586 TraK protein 9 254 2.3E-26 T 11-10-2018 IPR010563 Pilus assembly TraK BED32_03170 5dfed807cd43639732ddff2bff05ad89 331 SUPERFAMILY SSF51430 1 312 2.23E-103 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_03170 5dfed807cd43639732ddff2bff05ad89 331 Gene3D G3DSA:3.20.20.100 1 330 1.1E-117 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_03170 5dfed807cd43639732ddff2bff05ad89 331 Pfam PF00248 Aldo/keto reductase family 16 310 2.0E-75 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_18665 88253b576397a73b504a3f6037dc3b1a 143 SUPERFAMILY SSF89946 3 123 1.44E-41 T 11-10-2018 IPR036701 RraB-like superfamily BED32_18665 88253b576397a73b504a3f6037dc3b1a 143 PIRSF PIRSF018193 1 143 1.8E-67 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B BED32_18665 88253b576397a73b504a3f6037dc3b1a 143 Gene3D G3DSA:3.30.70.970 1 125 3.7E-49 T 11-10-2018 IPR036701 RraB-like superfamily BED32_18665 88253b576397a73b504a3f6037dc3b1a 143 Pfam PF06877 Regulator of ribonuclease activity B 12 113 5.5E-34 T 11-10-2018 IPR009671 Regulator of ribonuclease activity B domain BED32_18665 88253b576397a73b504a3f6037dc3b1a 143 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 4 117 30.852 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 Gene3D G3DSA:3.40.980.10 2 195 1.6E-63 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 Pfam PF00994 Probable molybdopterin binding domain 8 147 3.8E-28 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 SMART SM00852 7 153 4.3E-22 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 4 146 2.0E-39 T 11-10-2018 IPR001453 MoaB/Mog domain BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 69 82 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 BED32_18200 047e7f373a76a057de7a2de0964d5af5 195 SUPERFAMILY SSF53218 3 188 9.29E-48 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily BED32_01245 4838004499d3b6beac236fe9df8de04f 457 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 63 308 1.5E-19 T 11-10-2018 IPR010839 Acyclic terpene utilisation BED32_02915 79a6d545a9c55617d9f84bfbb0bac671 160 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 12 154 1.4E-36 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_02915 79a6d545a9c55617d9f84bfbb0bac671 160 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 8 154 6.8E-60 T 11-10-2018 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 BED32_02915 79a6d545a9c55617d9f84bfbb0bac671 160 SUPERFAMILY SSF55804 8 154 7.06E-41 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_02915 79a6d545a9c55617d9f84bfbb0bac671 160 Gene3D G3DSA:3.40.930.10 2 158 1.4E-61 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_02915 79a6d545a9c55617d9f84bfbb0bac671 160 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 57 73 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 PIRSF PIRSF000303 1 184 6.5E-63 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 11-10-2018 IPR029759 Glutathione peroxidase active site Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 Pfam PF00255 Glutathione peroxidase 5 111 4.1E-40 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 PRINTS PR01011 Glutathione peroxidase family signature 23 40 2.6E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 PRINTS PR01011 Glutathione peroxidase family signature 58 74 2.6E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 PRINTS PR01011 Glutathione peroxidase family signature 143 152 2.6E-18 T 11-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 SUPERFAMILY SSF52833 4 182 3.64E-55 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 Gene3D G3DSA:3.40.30.10 1 184 1.2E-64 T 11-10-2018 BED32_10690 91b46584c93c91016bfe7facc2ca37da 184 Hamap MF_02061 Thioredoxin/glutathione peroxidase BtuE [btuE]. 3 184 52.415 T 11-10-2018 IPR033674 Thioredoxin/glutathione peroxidase BtuE KEGG: 00480+1.11.1.15+1.11.1.9|KEGG: 00590+1.11.1.9|MetaCyc: PWY-4081 BED32_02375 0d0206a3073561c9d67a5919961891b2 306 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 4 306 50.112 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BED32_02375 0d0206a3073561c9d67a5919961891b2 306 PIRSF PIRSF026649 3 306 1.1E-93 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_02375 0d0206a3073561c9d67a5919961891b2 306 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 6 306 1.8E-136 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 BED32_02375 0d0206a3073561c9d67a5919961891b2 306 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 297 1.9E-101 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 BED32_02375 0d0206a3073561c9d67a5919961891b2 306 Hamap MF_01943 Lipid A biosynthesis palmitoleoyltransferase [lpxP]. 3 306 69.042 T 11-10-2018 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP GO:0008951|GO:0009409|GO:0036104 BED32_05365 c6cba9927153e90f4c04048f2aa63e15 284 SUPERFAMILY SSF52540 103 265 4.38E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_05365 c6cba9927153e90f4c04048f2aa63e15 284 Pfam PF01695 IstB-like ATP binding protein 106 260 6.2E-20 T 11-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 BED32_05365 c6cba9927153e90f4c04048f2aa63e15 284 SMART SM00382 139 268 0.001 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_05365 c6cba9927153e90f4c04048f2aa63e15 284 Gene3D G3DSA:3.40.50.300 86 267 1.4E-41 T 11-10-2018 BED32_08625 85ff1d2e8287599b80de52a25813ee7a 289 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 287 7.4E-154 T 11-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 BED32_08625 85ff1d2e8287599b80de52a25813ee7a 289 SUPERFAMILY SSF53448 1 286 3.76E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08625 85ff1d2e8287599b80de52a25813ee7a 289 Gene3D G3DSA:3.90.550.10 1 289 1.4E-84 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08625 85ff1d2e8287599b80de52a25813ee7a 289 Pfam PF00483 Nucleotidyl transferase 2 238 3.0E-67 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 BED32_16275 20ea1d154b3e9ed2a8f861cc5d3b0d21 218 PIRSF PIRSF016938 1 202 7.1E-32 T 11-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 BED32_16275 20ea1d154b3e9ed2a8f861cc5d3b0d21 218 Gene3D G3DSA:1.10.10.880 1 66 1.9E-27 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 BED32_16275 20ea1d154b3e9ed2a8f861cc5d3b0d21 218 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 87 5.4E-36 T 11-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 BED32_16275 20ea1d154b3e9ed2a8f861cc5d3b0d21 218 SUPERFAMILY SSF89069 1 66 2.48E-20 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 BED32_16275 20ea1d154b3e9ed2a8f861cc5d3b0d21 218 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 132 188 1.2E-21 T 11-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal BED32_16300 931fc434dd5fe6b79bc8b9a846b50463 279 Pfam PF01548 Transposase 37 141 2.7E-12 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_16300 931fc434dd5fe6b79bc8b9a846b50463 279 Pfam PF02371 Transposase IS116/IS110/IS902 family 204 271 2.2E-16 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_07995 8da97e2398e8ac6ccfdb0f00ebfc06fb 235 SMART SM00382 26 217 7.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_07995 8da97e2398e8ac6ccfdb0f00ebfc06fb 235 SUPERFAMILY SSF52540 2 227 6.32E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07995 8da97e2398e8ac6ccfdb0f00ebfc06fb 235 Gene3D G3DSA:3.40.50.300 1 233 1.4E-50 T 11-10-2018 BED32_07995 8da97e2398e8ac6ccfdb0f00ebfc06fb 235 Pfam PF00005 ABC transporter 19 164 8.3E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18135 ab8fb75fac4fe49400557cb8f8cdac40 166 Gene3D G3DSA:2.40.10.330 83 139 3.6E-38 T 11-10-2018 BED32_18135 ab8fb75fac4fe49400557cb8f8cdac40 166 SUPERFAMILY SSF54534 15 153 2.55E-33 T 11-10-2018 BED32_18135 ab8fb75fac4fe49400557cb8f8cdac40 166 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 15 84 7.5E-12 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BED32_18135 ab8fb75fac4fe49400557cb8f8cdac40 166 Gene3D G3DSA:3.10.50.40 24 152 3.6E-38 T 11-10-2018 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 Pfam PF00471 Ribosomal protein L33 7 53 8.8E-19 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 15.908 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 8.4E-28 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 SUPERFAMILY SSF57829 1 53 3.72E-20 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 BED32_20990 fbbf586ef666696b4990ee4251ee5023 55 Gene3D G3DSA:2.20.28.120 1 55 2.8E-31 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 SMART SM00345 23 82 8.1E-18 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 SUPERFAMILY SSF53383 79 478 1.35E-79 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 7.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 7.4E-6 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 SUPERFAMILY SSF46785 12 85 4.99E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 2.1E-17 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 Pfam PF00155 Aminotransferase class I and II 152 423 2.2E-19 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 Gene3D G3DSA:3.40.640.10 106 473 3.7E-110 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_16590 f996644dd9627e0818e6d4e3a56cb01d 484 Gene3D G3DSA:1.10.10.10 7 88 6.3E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02920 af8eb0e79084f47fc116b0531bc285ce 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 93 4.1E-29 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BED32_02920 af8eb0e79084f47fc116b0531bc285ce 95 Gene3D G3DSA:3.30.160.100 1 95 1.7E-39 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like BED32_02920 af8eb0e79084f47fc116b0531bc285ce 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 6.4E-36 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 BED32_02920 af8eb0e79084f47fc116b0531bc285ce 95 SUPERFAMILY SSF69754 1 95 4.32E-36 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like BED32_09985 21d1972f76c90fbd5283871048148261 330 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 320 2.6E-136 T 11-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 BED32_09985 21d1972f76c90fbd5283871048148261 330 SUPERFAMILY SSF53187 1 320 9.92E-86 T 11-10-2018 BED32_09985 21d1972f76c90fbd5283871048148261 330 Gene3D G3DSA:3.40.630.10 1 328 1.0E-106 T 11-10-2018 BED32_09985 21d1972f76c90fbd5283871048148261 330 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 44 322 1.6E-59 T 11-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 BED32_09985 21d1972f76c90fbd5283871048148261 330 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 330 143.155 T 11-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 BED32_09985 21d1972f76c90fbd5283871048148261 330 PIRSF PIRSF017020 1 328 3.1E-114 T 11-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 BED32_16695 3b494f5e4dbc075aeab90a53197be5a3 386 Pfam PF00872 Transposase, Mutator family 10 359 2.1E-89 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_08755 dffc0062e52816400084ca368b1e8600 275 SUPERFAMILY SSF51735 2 267 9.11E-30 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_08755 dffc0062e52816400084ca368b1e8600 275 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 213 1.3E-6 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_08755 dffc0062e52816400084ca368b1e8600 275 Gene3D G3DSA:3.40.50.720 1 271 2.3E-59 T 11-10-2018 BED32_14810 16f5dec60c2917d300e3c3352fe2af53 241 Pfam PF13462 Thioredoxin 79 232 7.3E-20 T 11-10-2018 IPR012336 Thioredoxin-like fold BED32_14810 16f5dec60c2917d300e3c3352fe2af53 241 Gene3D G3DSA:3.40.30.10 70 239 1.2E-43 T 11-10-2018 BED32_14810 16f5dec60c2917d300e3c3352fe2af53 241 SUPERFAMILY SSF52833 68 233 3.86E-39 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_10425 b151d4eae5b22e59019d34ab22da5e0e 415 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 7 405 5.5E-173 T 11-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type BED32_10425 b151d4eae5b22e59019d34ab22da5e0e 415 Pfam PF04403 Paraquat-inducible protein A 53 204 1.2E-38 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like BED32_10425 b151d4eae5b22e59019d34ab22da5e0e 415 Pfam PF04403 Paraquat-inducible protein A 250 405 2.4E-46 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 SMART SM00855 5 191 1.6E-27 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 9.7E-30 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 137 221 1.2E-4 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 SUPERFAMILY SSF53254 4 247 2.36E-78 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 46.09 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 Gene3D G3DSA:3.40.50.1240 2 250 1.1E-91 T 11-10-2018 IPR029033 Histidine phosphatase superfamily BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 11-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 248 1.2E-126 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 PIRSF PIRSF000709 169 237 0.036 T 11-10-2018 BED32_07880 b2855255b15bc6a755b9dfe78868c9bd 250 PIRSF PIRSF000709 3 114 9.7E-9 T 11-10-2018 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Pfam PF02779 Transketolase, pyrimidine binding domain 592 787 2.4E-65 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Gene3D G3DSA:3.40.50.11610 723 929 2.6E-169 T 11-10-2018 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 PIRSF PIRSF000157 1 934 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 932 7.5E-51 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 SMART SM00861 593 786 8.9E-62 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Gene3D G3DSA:3.40.50.970 167 533 1.9E-148 T 11-10-2018 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Gene3D G3DSA:3.40.50.12470 556 802 2.6E-169 T 11-10-2018 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Pfam PF00676 Dehydrogenase E1 component 223 512 2.6E-50 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Gene3D G3DSA:1.10.287.1150 84 166 4.9E-30 T 11-10-2018 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 SUPERFAMILY SSF52518 577 793 1.09E-50 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 932 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 SUPERFAMILY SSF52518 120 540 1.26E-88 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold BED32_07760 16cf1d629a169bf89f2979f1f9dd4159 935 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 49 1.6E-15 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 BED32_01015 8159683c6b4292ff570c2eef69b90630 519 TIGRFAM TIGR03369 cellulose_bcsE: cellulose biosynthesis protein BcsE 155 471 1.8E-111 T 11-10-2018 IPR017745 BcsE, GIL domain GO:0035438 BED32_01015 8159683c6b4292ff570c2eef69b90630 519 Pfam PF10995 GGDEF I-site like or GIL domain 160 471 2.9E-132 T 11-10-2018 IPR017745 BcsE, GIL domain GO:0035438 BED32_04265 acbaa6fdf2355ed18620a090294d91d0 311 Gene3D G3DSA:1.10.443.10 125 310 3.4E-27 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_04265 acbaa6fdf2355ed18620a090294d91d0 311 Pfam PF00589 Phage integrase family 144 297 7.3E-21 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_04265 acbaa6fdf2355ed18620a090294d91d0 311 SUPERFAMILY SSF56349 3 306 7.36E-32 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_04265 acbaa6fdf2355ed18620a090294d91d0 311 Gene3D G3DSA:1.10.150.130 2 93 1.3E-9 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_06940 af5b8d508cb32bbc77b3d6fb5c4c4974 178 Pfam PF02767 DNA polymerase III beta subunit, central domain 17 107 2.1E-4 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 BED32_06940 af5b8d508cb32bbc77b3d6fb5c4c4974 178 Gene3D G3DSA:3.10.150.10 4 111 1.9E-10 T 11-10-2018 BED32_14945 a93a35e97693e5663484781a4e9ddb52 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 423 1.1E-137 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) BED32_14945 a93a35e97693e5663484781a4e9ddb52 423 SUPERFAMILY SSF56935 26 423 2.93E-102 T 11-10-2018 BED32_14945 a93a35e97693e5663484781a4e9ddb52 423 Gene3D G3DSA:2.40.160.60 26 423 4.3E-140 T 11-10-2018 BED32_21305 fa871eadb0240d05b5017b8e21d7f4c5 196 Gene3D G3DSA:3.90.550.10 2 194 1.8E-56 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_21305 fa871eadb0240d05b5017b8e21d7f4c5 196 Pfam PF12804 MobA-like NTP transferase domain 7 156 1.4E-35 T 11-10-2018 IPR025877 MobA-like NTP transferase BED32_21305 fa871eadb0240d05b5017b8e21d7f4c5 196 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 3 188 28.853 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 BED32_21305 fa871eadb0240d05b5017b8e21d7f4c5 196 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 5 185 8.4E-68 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 BED32_21305 fa871eadb0240d05b5017b8e21d7f4c5 196 SUPERFAMILY SSF53448 1 188 7.93E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01240 727ac643cf64556df50b18df401838e1 105 Pfam PF14330 Domain of unknown function (DUF4387) 6 102 5.0E-38 T 11-10-2018 IPR025496 Protein of unknown function DUF4387 BED32_20925 1a330cc9107e39bb137abebdef24125d 455 Pfam PF01551 Peptidase family M23 356 449 1.3E-25 T 11-10-2018 IPR016047 Peptidase M23 BED32_20925 1a330cc9107e39bb137abebdef24125d 455 SUPERFAMILY SSF51261 283 453 4.84E-47 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_20925 1a330cc9107e39bb137abebdef24125d 455 Gene3D G3DSA:2.70.70.10 315 455 1.5E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 PIRSF PIRSF001478 1 500 1.6E-258 T 11-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 Pfam PF02610 L-arabinose isomerase 5 359 9.5E-178 T 11-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 Gene3D G3DSA:3.40.50.10940 1 175 8.7E-89 T 11-10-2018 IPR038583 L-arabinose isomerase, N-terminal domain superfamily KEGG: 00040+5.3.1.4 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 SUPERFAMILY SSF50443 329 498 1.6E-71 T 11-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 SUPERFAMILY SSF53743 1 326 2.62E-123 T 11-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 Pfam PF11762 L-arabinose isomerase C-terminal domain 363 476 2.1E-46 T 11-10-2018 IPR024664 L-arabinose isomerase, C-terminal KEGG: 00040+5.3.1.4 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 Hamap MF_00519 L-arabinose isomerase [araA]. 1 477 64.667 T 11-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BED32_11495 edb720327ce1f17f9ded0f8ed62cbbc3 500 ProDom PD018364 ISOMERASE L-ARABINOSE ARABINOSE METABOLISM CARBOHYDRATE CATABOLISM ARAA 1 304 9.0E-165 T 11-10-2018 IPR003762 L-arabinose isomerase GO:0008733 KEGG: 00040+5.3.1.4 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 1.0E-85 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 Pfam PF01081 KDPG and KHG aldolase 9 203 7.4E-91 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 Gene3D G3DSA:3.20.20.70 1 211 8.8E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 SUPERFAMILY SSF51569 4 209 7.87E-70 T 11-10-2018 BED32_10250 0939840cd318fb8b6bed459efc6e8a70 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_11000 a9b8d504f54794c123d388e06a639953 87 Pfam PF11656 YjbD family (DUF3811) 1 87 6.8E-39 T 11-10-2018 IPR020317 Uncharacterised protein family YjbD BED32_11000 a9b8d504f54794c123d388e06a639953 87 ProDom PD063639 YJBD CYTOPLASMIC STY4411 YPO2363 ECS5006 Y1969 1 87 1.0E-42 T 11-10-2018 IPR020317 Uncharacterised protein family YjbD BED32_12150 bb600b0539b9f3527eeb6da938324347 300 Gene3D G3DSA:3.40.1090.10 1 103 2.2E-22 T 11-10-2018 BED32_12150 bb600b0539b9f3527eeb6da938324347 300 Gene3D G3DSA:3.40.1090.10 104 210 7.7E-15 T 11-10-2018 BED32_12150 bb600b0539b9f3527eeb6da938324347 300 SUPERFAMILY SSF52151 1 288 2.41E-58 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BED32_12150 bb600b0539b9f3527eeb6da938324347 300 Pfam PF01734 Patatin-like phospholipase 8 167 5.2E-23 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BED32_21915 e76d61c53363a6f82bc23ef8b6758331 527 Pfam PF06834 TraU protein 233 524 3.5E-93 T 11-10-2018 IPR009649 TraU BED32_13740 b4e507b611da8a05d1050998b19fa283 203 Gene3D G3DSA:2.50.20.10 20 202 1.8E-54 T 11-10-2018 BED32_13740 b4e507b611da8a05d1050998b19fa283 203 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 9 201 31.722 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BED32_13740 b4e507b611da8a05d1050998b19fa283 203 SUPERFAMILY SSF89392 23 202 3.84E-56 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX BED32_13740 b4e507b611da8a05d1050998b19fa283 203 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 32 191 9.5E-59 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like BED32_13740 b4e507b611da8a05d1050998b19fa283 203 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 1 203 3.9E-98 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 BED32_17780 93025bdbab49c40c2db92da52ac12681 284 Pfam PF17113 Regulatory signalling modulator protein AmpE 1 284 1.1E-160 T 11-10-2018 IPR031347 Protein AmpE BED32_17780 93025bdbab49c40c2db92da52ac12681 284 SUPERFAMILY SSF90123 9 200 5.1E-5 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 51 117 9.4E-16 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 Gene3D G3DSA:2.30.330.10 38 126 3.8E-20 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 SUPERFAMILY SSF101801 48 121 1.31E-15 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 83 96 4.6E-14 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 50 66 4.6E-14 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 96 111 4.6E-14 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BED32_03820 afe0f6552410c15c54a0224a6f9d262b 128 PRINTS PR00956 Flagellar motor switch protein FliN signature 67 83 4.6E-14 T 11-10-2018 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 Pfam PF00691 OmpA family 442 540 4.1E-17 T 11-10-2018 IPR006665 OmpA-like domain BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 PRINTS PR01021 OMPA domain signature 443 465 1.9E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 PRINTS PR01021 OMPA domain signature 490 506 1.9E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 PRINTS PR01021 OMPA domain signature 475 490 1.9E-7 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 SUPERFAMILY SSF103088 438 549 4.19E-26 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_09075 818ec1208cca70d4d420dd14627e21f5 556 Gene3D G3DSA:3.30.1330.60 419 554 3.2E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily BED32_06170 aaf0f1388e50bad764c83958599546e2 101 SUPERFAMILY SSF46767 2 83 9.29E-26 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 BED32_06170 aaf0f1388e50bad764c83958599546e2 101 Gene3D G3DSA:1.10.10.10 1 101 1.0E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_06170 aaf0f1388e50bad764c83958599546e2 101 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 4 81 1.7E-25 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_06170 aaf0f1388e50bad764c83958599546e2 101 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 3 80 3.7E-16 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 BED32_19775 6d75a56d7d4255c450d85c3d1a44328a 234 Pfam PF04493 Endonuclease V 15 207 3.7E-72 T 11-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BED32_19775 6d75a56d7d4255c450d85c3d1a44328a 234 Gene3D G3DSA:3.30.2170.10 1 215 1.4E-81 T 11-10-2018 BED32_19775 6d75a56d7d4255c450d85c3d1a44328a 234 Hamap MF_00801 Endonuclease V [nfi]. 3 217 33.079 T 11-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 BED32_00220 6b6814b953cb1359ab88e0b4ab3c28a3 92 SUPERFAMILY SSF53098 12 67 1.18E-9 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_00220 6b6814b953cb1359ab88e0b4ab3c28a3 92 Pfam PF13683 Integrase core domain 10 63 2.3E-15 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 230 1.1E-20 T 11-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 9.8E-137 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 SUPERFAMILY SSF100950 1 264 1.88E-104 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 Gene3D G3DSA:3.40.50.1360 1 266 1.4E-116 T 11-10-2018 BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 11-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BED32_07560 b20c6474ea4de7112db59d37b14fa168 266 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.663 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 BED32_13320 2e0f2e1f6427085ebb41cb3ca7d741bd 377 Pfam PF01757 Acyltransferase family 10 355 1.4E-28 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BED32_13320 2e0f2e1f6427085ebb41cb3ca7d741bd 377 Hamap MF_01066 Glucans biosynthesis protein C [mdoC]. 1 374 36.275 T 11-10-2018 IPR023723 Glucan biosynthesis protein C GO:0016741 BED32_05840 51708cb8dc4b424eb39cc8d317e255df 304 Gene3D G3DSA:3.30.420.40 119 289 7.9E-78 T 11-10-2018 BED32_05840 51708cb8dc4b424eb39cc8d317e255df 304 SUPERFAMILY SSF53067 2 299 4.82E-58 T 11-10-2018 BED32_05840 51708cb8dc4b424eb39cc8d317e255df 304 Gene3D G3DSA:3.30.420.40 4 296 7.9E-78 T 11-10-2018 BED32_05840 51708cb8dc4b424eb39cc8d317e255df 304 ProSitePatterns PS01125 ROK family signature. 130 157 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_05840 51708cb8dc4b424eb39cc8d317e255df 304 Pfam PF00480 ROK family 3 300 7.5E-83 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PIRSF PIRSF001522 1 311 5.1E-115 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 Pfam PF01278 Omptin family 33 311 6.2E-109 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 SUPERFAMILY SSF69917 32 311 5.23E-93 T 11-10-2018 IPR020080 Outer membrane adhesin/peptidase omptin GO:0004190 BED32_14335 75db156b5795d117aa277bf9464b221f 311 Gene3D G3DSA:2.40.128.90 26 311 5.2E-103 T 11-10-2018 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 143 170 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 115 142 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 39 53 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 255 275 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 186 207 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 234 254 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 83 108 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_14335 75db156b5795d117aa277bf9464b221f 311 PRINTS PR00482 Omptin serine protease signature 208 229 1.2E-65 T 11-10-2018 IPR000036 Peptidase A26, omptin GO:0004175|GO:0006508|GO:0009279 BED32_15520 4ddb87a27695a15ce995ae805fd4ec2f 92 Pfam PF09904 Winged helix-turn helix 3 90 4.1E-39 T 11-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 BED32_15520 4ddb87a27695a15ce995ae805fd4ec2f 92 PIRSF PIRSF037266 1 92 9.3E-41 T 11-10-2018 IPR017162 Uncharacterised conserved protein UCP037266 BED32_15520 4ddb87a27695a15ce995ae805fd4ec2f 92 Gene3D G3DSA:1.10.10.10 2 92 1.3E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_05400 7c952c148f1cad2fabc1310364298a8e 96 Pfam PF07102 Protein of unknown function (DUF1364) 3 91 6.8E-43 T 11-10-2018 IPR010774 Protein of unknown function DUF1364 BED32_05400 7c952c148f1cad2fabc1310364298a8e 96 Gene3D G3DSA:3.30.50.20 19 92 3.4E-34 T 11-10-2018 BED32_06635 7c952c148f1cad2fabc1310364298a8e 96 Pfam PF07102 Protein of unknown function (DUF1364) 3 91 6.8E-43 T 11-10-2018 IPR010774 Protein of unknown function DUF1364 BED32_06635 7c952c148f1cad2fabc1310364298a8e 96 Gene3D G3DSA:3.30.50.20 19 92 3.4E-34 T 11-10-2018 BED32_05235 ea5957f63129ad60f0f5506d3a24dbb1 83 Gene3D G3DSA:1.10.1660.60 1 80 1.8E-21 T 11-10-2018 IPR038146 Bacteriophage 933W-like, putative excisionase superfamily BED32_05235 ea5957f63129ad60f0f5506d3a24dbb1 83 Pfam PF06806 Putative excisionase (DUF1233) 4 72 3.3E-29 T 11-10-2018 IPR009634 Putative excisionase BED32_17165 1067bd0c2316b6e725ba46142d43c659 122 Gene3D G3DSA:1.20.58.1630 27 120 5.8E-16 T 11-10-2018 IPR038432 PulS/OutS-like superfamily BED32_17165 1067bd0c2316b6e725ba46142d43c659 122 Pfam PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) 26 117 4.2E-14 T 11-10-2018 IPR019114 Chaperone lipoprotein, PulS/OutS-like BED32_17165 1067bd0c2316b6e725ba46142d43c659 122 ProDom PD074041 YACC EXPORTED PRECURSOR SIGNAL PERIPLASMIC Y0776 SIMILAR ECS0126 STY0189 ESCHERICHIA 29 109 0.002 T 11-10-2018 BED32_03995 997dc9c15ab227d9541132b8b0588def 155 Pfam PF05433 Glycine zipper 2TM domain 62 103 1.3E-9 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BED32_12365 f169dd2dafca8f3b9490cd16bc011d41 262 Pfam PF02562 PhoH-like protein 57 261 3.1E-76 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 BED32_12365 f169dd2dafca8f3b9490cd16bc011d41 262 Gene3D G3DSA:3.40.50.300 54 262 1.3E-64 T 11-10-2018 BED32_12365 f169dd2dafca8f3b9490cd16bc011d41 262 SUPERFAMILY SSF52540 57 239 7.12E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03610 3a629e7b59826158d775b183fe858852 249 SUPERFAMILY SSF48452 49 219 4.69E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_03610 3a629e7b59826158d775b183fe858852 249 Gene3D G3DSA:1.25.40.10 22 243 6.1E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_01770 08580e15f160a8bad5b013dfa8558c3e 282 Gene3D G3DSA:3.60.130.10 1 282 3.3E-99 T 11-10-2018 BED32_01770 08580e15f160a8bad5b013dfa8558c3e 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 7 272 1.4E-66 T 11-10-2018 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: R-HSA-71262 BED32_01770 08580e15f160a8bad5b013dfa8558c3e 282 SUPERFAMILY SSF51197 7 281 1.14E-96 T 11-10-2018 BED32_05780 8a82b6a2066c15e660214bf40f6eca31 250 Pfam PF07317 Flagellar regulator YcgR 10 113 3.0E-29 T 11-10-2018 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal BED32_05780 8a82b6a2066c15e660214bf40f6eca31 250 Gene3D G3DSA:2.40.10.220 118 245 3.6E-32 T 11-10-2018 BED32_05780 8a82b6a2066c15e660214bf40f6eca31 250 Pfam PF07238 PilZ domain 116 234 6.1E-10 T 11-10-2018 IPR009875 PilZ domain GO:0035438 BED32_05780 8a82b6a2066c15e660214bf40f6eca31 250 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 5 243 27.927 T 11-10-2018 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 BED32_15695 e19854f56fdd9529d976888592f06072 181 SUPERFAMILY SSF55729 3 164 1.49E-40 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_15695 e19854f56fdd9529d976888592f06072 181 Pfam PF13302 Acetyltransferase (GNAT) domain 7 141 4.5E-22 T 11-10-2018 IPR000182 GNAT domain BED32_15695 e19854f56fdd9529d976888592f06072 181 Gene3D G3DSA:3.40.630.30 5 174 1.4E-50 T 11-10-2018 BED32_07470 64fe6b786ad0259154d614c197155dbf 304 SMART SM00062 43 275 4.0E-65 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_07470 64fe6b786ad0259154d614c197155dbf 304 Gene3D G3DSA:3.40.190.10 33 278 8.2E-101 T 11-10-2018 BED32_07470 64fe6b786ad0259154d614c197155dbf 304 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 273 4.7E-46 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF BED32_07470 64fe6b786ad0259154d614c197155dbf 304 Gene3D G3DSA:3.40.190.10 137 232 8.2E-101 T 11-10-2018 BED32_07470 64fe6b786ad0259154d614c197155dbf 304 SUPERFAMILY SSF53850 3 276 1.45E-61 T 11-10-2018 BED32_19405 c1c3d13ab61894e718761c4bc2ba938a 442 Pfam PF01490 Transmembrane amino acid transporter protein 24 440 3.0E-7 T 11-10-2018 IPR013057 Amino acid transporter, transmembrane domain BED32_19405 c1c3d13ab61894e718761c4bc2ba938a 442 Hamap MF_01583 Threonine/serine transporter TdcC [tdcC]. 1 442 49.999 T 11-10-2018 IPR023726 Threonine/serine transporter TdcC GO:0015565|GO:0015826|GO:0016021|GO:0022889|GO:0032329 BED32_19405 c1c3d13ab61894e718761c4bc2ba938a 442 TIGRFAM TIGR00814 stp: serine transporter 16 432 1.2E-166 T 11-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 BED32_20325 0a10563986f8b032590f4b8481da53ad 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 40 2.0E-4 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_20325 0a10563986f8b032590f4b8481da53ad 190 Gene3D G3DSA:1.10.357.10 5 166 1.8E-11 T 11-10-2018 BED32_20325 0a10563986f8b032590f4b8481da53ad 190 SUPERFAMILY SSF46689 11 51 1.75E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 4.0E-33 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.657 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 Gene3D G3DSA:1.10.3390.10 1 75 5.4E-35 T 11-10-2018 IPR023202 YejL-like superfamily BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 SUPERFAMILY SSF158651 1 75 1.7E-31 T 11-10-2018 IPR023202 YejL-like superfamily BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 PIRSF PIRSF006188 1 72 2.1E-35 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 BED32_14230 1d9a2730caaa171235fa2c54435439dd 75 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 1.3E-23 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 BED32_03900 80ebf35f7e532de40a394ec612df41aa 243 Pfam PF00460 Flagella basal body rod protein 5 35 2.6E-8 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03900 80ebf35f7e532de40a394ec612df41aa 243 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 119 1.4E-29 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BED32_03900 80ebf35f7e532de40a394ec612df41aa 243 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 5 220 4.7E-55 T 11-10-2018 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 BED32_03900 80ebf35f7e532de40a394ec612df41aa 243 SUPERFAMILY SSF117143 78 176 1.7E-9 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BED32_03900 80ebf35f7e532de40a394ec612df41aa 243 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 168 238 9.6E-16 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BED32_12515 8bb24a4e44924f19b2766f5f573ece3d 504 Pfam PF00324 Amino acid permease 36 473 7.0E-119 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BED32_12515 8bb24a4e44924f19b2766f5f573ece3d 504 ProSitePatterns PS00218 Amino acid permeases signature. 61 91 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BED32_12515 8bb24a4e44924f19b2766f5f573ece3d 504 Gene3D G3DSA:1.20.1740.10 28 493 2.9E-63 T 11-10-2018 BED32_12515 8bb24a4e44924f19b2766f5f573ece3d 504 PIRSF PIRSF006060 22 492 5.5E-64 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_11195 1a2aa8318a96454060a8e4de03051df6 123 PIRSF PIRSF025560 1 123 1.7E-41 T 11-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 BED32_11195 1a2aa8318a96454060a8e4de03051df6 123 Pfam PF07027 Protein of unknown function (DUF1318) 35 123 1.3E-29 T 11-10-2018 IPR008309 Uncharacterised conserved protein UCP025560 BED32_21525 3fdcca71c1195cab9540b099c1fd38d6 251 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 116 2.9E-16 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_21525 3fdcca71c1195cab9540b099c1fd38d6 251 Gene3D G3DSA:1.10.3720.10 22 227 3.6E-45 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21525 3fdcca71c1195cab9540b099c1fd38d6 251 SUPERFAMILY SSF161098 22 209 9.42E-41 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21525 3fdcca71c1195cab9540b099c1fd38d6 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 4.1E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_15840 92c8febc4d8b4a4405190a6ea7aab4eb 266 Gene3D G3DSA:3.40.1190.20 1 266 2.7E-100 T 11-10-2018 IPR029056 Ribokinase-like BED32_15840 92c8febc4d8b4a4405190a6ea7aab4eb 266 SUPERFAMILY SSF53613 5 266 5.3E-78 T 11-10-2018 IPR029056 Ribokinase-like BED32_15840 92c8febc4d8b4a4405190a6ea7aab4eb 266 Pfam PF08543 Phosphomethylpyrimidine kinase 13 260 1.3E-92 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 BED32_15840 92c8febc4d8b4a4405190a6ea7aab4eb 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 6 262 1.5E-101 T 11-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_21195 d8fb63c436b4a1f8ce67885a788735fa 404 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 397 7.0E-192 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_21195 d8fb63c436b4a1f8ce67885a788735fa 404 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 2 397 24.618 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_21195 d8fb63c436b4a1f8ce67885a788735fa 404 Pfam PF03616 Sodium/glutamate symporter 2 366 7.4E-161 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 SUPERFAMILY SSF47240 11 167 2.75E-48 T 11-10-2018 IPR009078 Ferritin-like superfamily BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 144 162 2.0E-12 T 11-10-2018 IPR002177 DNA-binding protein Dps BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 51 67 2.0E-12 T 11-10-2018 IPR002177 DNA-binding protein Dps BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 75 91 2.0E-12 T 11-10-2018 IPR002177 DNA-binding protein Dps BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 ProSitePatterns PS00818 Dps protein family signature 1. 51 67 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 PIRSF PIRSF005900 9 167 1.5E-39 T 11-10-2018 IPR002177 DNA-binding protein Dps BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 Pfam PF00210 Ferritin-like domain 30 166 1.6E-20 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 167 44.841 T 11-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 BED32_08295 6b83bd5972cbf57c158a1d36468822b4 167 Gene3D G3DSA:1.20.1260.10 1 167 3.6E-50 T 11-10-2018 IPR012347 Ferritin-like BED32_03460 e945de6050608e6731256e2a78a7cf15 397 PIRSF PIRSF006060 3 394 1.9E-46 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_03460 e945de6050608e6731256e2a78a7cf15 397 Pfam PF13520 Amino acid permease 3 381 2.1E-28 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_03460 e945de6050608e6731256e2a78a7cf15 397 Gene3D G3DSA:1.20.1740.10 3 395 1.3E-46 T 11-10-2018 BED32_14825 a6771dfcb4a1ef4bd805452ce19156bd 345 PIRSF PIRSF020588 1 344 5.1E-149 T 11-10-2018 IPR023597 Flagellar regulator Flk GO:0010468|GO:0031224 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 150 178 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 348 9.1E-70 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 241 261 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 Gene3D G3DSA:1.20.1090.10 160 364 3.0E-80 T 11-10-2018 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 PIRSF PIRSF000112 1 360 7.5E-96 T 11-10-2018 IPR016205 Glycerol dehydrogenase GO:0016614|GO:0046872|GO:0055114 KEGG: 00564+1.1.1.261|MetaCyc: PWY-6349 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 Gene3D G3DSA:3.40.50.1970 2 159 1.1E-44 T 11-10-2018 BED32_18520 a55d2577181a0c4db1596a8b11a003b0 364 SUPERFAMILY SSF56796 2 353 6.54E-91 T 11-10-2018 BED32_10835 798c15038cb0b5f994429487c798982c 355 Gene3D G3DSA:2.40.440.10 23 306 4.4E-87 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BED32_10835 798c15038cb0b5f994429487c798982c 355 SUPERFAMILY SSF141523 98 235 4.58E-30 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BED32_10835 798c15038cb0b5f994429487c798982c 355 Pfam PF03734 L,D-transpeptidase catalytic domain 100 235 1.9E-20 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BED32_19550 7094f0929b30ef448f4b1e97e6c188ff 316 Gene3D G3DSA:2.30.330.10 233 314 5.8E-15 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_19550 7094f0929b30ef448f4b1e97e6c188ff 316 TIGRFAM TIGR02551 SpaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family 29 311 1.4E-54 T 11-10-2018 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO GO:0030254 BED32_19550 7094f0929b30ef448f4b1e97e6c188ff 316 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 242 312 2.8E-13 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) BED32_19550 7094f0929b30ef448f4b1e97e6c188ff 316 Pfam PF06622 SepQ protein 24 217 4.1E-6 T 11-10-2018 IPR009532 SepQ BED32_19550 7094f0929b30ef448f4b1e97e6c188ff 316 SUPERFAMILY SSF101801 243 311 2.22E-12 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_10295 b57e73dea97e6a7c2f3b8b21224ce6df 89 Gene3D G3DSA:3.30.1070.10 31 87 5.9E-28 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 BED32_10295 b57e73dea97e6a7c2f3b8b21224ce6df 89 Pfam PF03776 Septum formation topological specificity factor MinE 14 82 2.9E-24 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BED32_10295 b57e73dea97e6a7c2f3b8b21224ce6df 89 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 3.0E-33 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BED32_10295 b57e73dea97e6a7c2f3b8b21224ce6df 89 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 86 18.604 T 11-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 BED32_10295 b57e73dea97e6a7c2f3b8b21224ce6df 89 SUPERFAMILY SSF55229 32 85 1.44E-17 T 11-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 Pfam PF03466 LysR substrate binding domain 85 285 4.5E-39 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 SUPERFAMILY SSF46785 1 83 3.33E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 Gene3D G3DSA:1.10.10.10 1 85 2.0E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 Gene3D G3DSA:3.40.190.290 89 289 5.8E-34 T 11-10-2018 BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 SUPERFAMILY SSF53850 85 287 6.41E-38 T 11-10-2018 BED32_08415 c122f5c2e057ee08ab0b97b3e84c3e5e 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.3E-15 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_02320 d2dcfa6ba2580c011293c19ba547f987 455 Pfam PF00860 Permease family 32 415 2.9E-83 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 BED32_16565 e71b361c404c6a74e95d104b44ea707c 411 Gene3D G3DSA:1.20.1250.20 16 399 3.2E-38 T 11-10-2018 BED32_16565 e71b361c404c6a74e95d104b44ea707c 411 Hamap MF_01118 Uncharacterized MFS-type transporter YhhS [yhhS]. 12 401 40.781 T 11-10-2018 IPR023008 Uncharacterized MFS-type transporter YhhS-like BED32_16565 e71b361c404c6a74e95d104b44ea707c 411 SUPERFAMILY SSF103473 21 402 2.22E-46 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_16565 e71b361c404c6a74e95d104b44ea707c 411 Pfam PF07690 Major Facilitator Superfamily 28 271 1.6E-14 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_19665 7c642942ee67660a55a9bb8b573dbd36 403 TIGRFAM TIGR02500 type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family 5 401 3.2E-89 T 11-10-2018 IPR012843 Type III secretion system YscD/HrpQ BED32_19665 7c642942ee67660a55a9bb8b573dbd36 403 Pfam PF16693 Inner membrane component of T3SS, periplasmic domain 171 397 4.1E-18 T 11-10-2018 IPR032034 Yop protein translocation protein D, periplasmic domain BED32_00895 d56c312d6e58632b31bd6e22219f1a35 157 Gene3D G3DSA:3.40.630.30 1 157 1.4E-20 T 11-10-2018 BED32_00895 d56c312d6e58632b31bd6e22219f1a35 157 Pfam PF13673 Acetyltransferase (GNAT) domain 79 139 1.0E-9 T 11-10-2018 IPR000182 GNAT domain BED32_00895 d56c312d6e58632b31bd6e22219f1a35 157 SUPERFAMILY SSF55729 1 140 1.25E-20 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_12685 7a4ae8dac4adbcd0baa600521a339ca9 448 Gene3D G3DSA:3.30.1330.90 4 153 1.4E-51 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BED32_12685 7a4ae8dac4adbcd0baa600521a339ca9 448 SUPERFAMILY SSF143548 10 152 1.23E-45 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 BED32_12685 7a4ae8dac4adbcd0baa600521a339ca9 448 Pfam PF03315 Serine dehydratase beta chain 1 149 1.1E-52 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BED32_12685 7a4ae8dac4adbcd0baa600521a339ca9 448 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 1 445 1.2E-220 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 BED32_12685 7a4ae8dac4adbcd0baa600521a339ca9 448 Pfam PF03313 Serine dehydratase alpha chain 178 442 1.6E-95 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit BED32_09755 8209510668bbc34ddb51ba5d751bf4c0 218 Pfam PF04391 Protein of unknown function (DUF533) 32 209 3.7E-50 T 11-10-2018 IPR007486 Inner membrane protein YebE BED32_09755 8209510668bbc34ddb51ba5d751bf4c0 218 SUPERFAMILY SSF158682 69 210 5.75E-19 T 11-10-2018 IPR029024 TerB-like BED32_09755 8209510668bbc34ddb51ba5d751bf4c0 218 Gene3D G3DSA:1.10.3680.10 77 217 2.0E-10 T 11-10-2018 IPR029024 TerB-like BED32_12035 590786fb42801f45172fbe8727ee9c04 255 Hamap MF_01067 UPF0259 membrane protein YciC [yciC]. 1 249 22.573 T 11-10-2018 IPR009627 Uncharacterised protein family UPF0259 BED32_12035 590786fb42801f45172fbe8727ee9c04 255 Pfam PF06790 Uncharacterised protein family (UPF0259) 1 247 8.1E-93 T 11-10-2018 IPR009627 Uncharacterised protein family UPF0259 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 222 8.8E-10 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 SUPERFAMILY SSF54211 1 181 3.64E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 Gene3D G3DSA:3.30.230.70 10 238 7.3E-64 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.073 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 SUPERFAMILY SSF55666 153 237 1.31E-24 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 1.9E-109 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 BED32_21025 21a36e20a47ac5c6088284f8b3e63c75 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 2.4E-24 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 BED32_02425 091a9dc4280bbb78cc25d3059fae9c72 80 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 1 79 6.0E-36 T 11-10-2018 IPR010398 Protein of unknown function DUF997 BED32_02425 091a9dc4280bbb78cc25d3059fae9c72 80 Pfam PF06196 Protein of unknown function (DUF997) 7 77 8.0E-31 T 11-10-2018 IPR010398 Protein of unknown function DUF997 BED32_06780 6be297889fff2ae7b8e921f53f549592 468 Pfam PF07157 DNA circularisation protein N-terminus 25 118 2.0E-33 T 11-10-2018 IPR009826 DNA circulation, N-terminal BED32_06780 6be297889fff2ae7b8e921f53f549592 468 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 21 120 5.0E-41 T 11-10-2018 IPR009826 DNA circulation, N-terminal BED32_19565 f1babfadf0633bf05003a2df4414104f 451 SUPERFAMILY SSF52540 97 365 2.55E-92 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_19565 f1babfadf0633bf05003a2df4414104f 451 SMART SM00382 162 343 1.7E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_19565 f1babfadf0633bf05003a2df4414104f 451 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 25 423 5.7E-156 T 11-10-2018 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_19565 f1babfadf0633bf05003a2df4414104f 451 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 359 4.8E-75 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_19565 f1babfadf0633bf05003a2df4414104f 451 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 350 359 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 BED32_19565 f1babfadf0633bf05003a2df4414104f 451 Gene3D G3DSA:3.40.50.12240 25 441 2.0E-138 T 11-10-2018 BED32_13850 38a0057389240b51959e6b3d0ec2bdde 336 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 232 3.3E-28 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 BED32_13850 38a0057389240b51959e6b3d0ec2bdde 336 SUPERFAMILY SSF51735 1 332 3.42E-58 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_13850 38a0057389240b51959e6b3d0ec2bdde 336 Gene3D G3DSA:3.40.50.720 1 332 7.7E-57 T 11-10-2018 BED32_07710 d92a70b690e71f0a37f0c1b54ab80f3c 321 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 306 4.9E-120 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BED32_07710 d92a70b690e71f0a37f0c1b54ab80f3c 321 Gene3D G3DSA:2.40.100.10 170 309 2.7E-55 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_07710 d92a70b690e71f0a37f0c1b54ab80f3c 321 SMART SM00797 23 298 8.1E-143 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BED32_07710 d92a70b690e71f0a37f0c1b54ab80f3c 321 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 24 281 1.7E-89 T 11-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B BED32_07710 d92a70b690e71f0a37f0c1b54ab80f3c 321 SUPERFAMILY SSF50891 173 288 6.07E-12 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 SUPERFAMILY SSF102114 5 376 6.54E-107 T 11-10-2018 BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 SMART SM00729 6 223 3.5E-47 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 Gene3D G3DSA:3.80.30.20 2 289 1.3E-97 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 Pfam PF06969 HemN C-terminal domain 304 364 2.3E-8 T 11-10-2018 IPR010723 HemN, C-terminal BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 Pfam PF04055 Radical SAM superfamily 11 179 3.7E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_04325 8f95f63631ff5c43fd266cf7b322bd02 376 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 368 9.1E-140 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 BED32_19235 f307b0db159d437bf7933d77d947763a 621 SUPERFAMILY SSF53187 219 443 4.08E-52 T 11-10-2018 BED32_19235 f307b0db159d437bf7933d77d947763a 621 Gene3D G3DSA:3.40.630.40 206 450 9.1E-70 T 11-10-2018 BED32_19235 f307b0db159d437bf7933d77d947763a 621 Gene3D G3DSA:2.60.40.3500 9 121 1.9E-14 T 11-10-2018 BED32_19235 f307b0db159d437bf7933d77d947763a 621 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 221 440 3.0E-48 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BED32_19235 f307b0db159d437bf7933d77d947763a 621 SUPERFAMILY SSF54106 506 550 1.57E-10 T 11-10-2018 BED32_19235 f307b0db159d437bf7933d77d947763a 621 SMART SM00646 281 440 1.2E-72 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 BED32_19235 f307b0db159d437bf7933d77d947763a 621 SMART SM00257 507 550 8.2E-14 T 11-10-2018 IPR018392 LysM domain BED32_19235 f307b0db159d437bf7933d77d947763a 621 SMART SM00257 576 619 1.3E-16 T 11-10-2018 IPR018392 LysM domain BED32_19235 f307b0db159d437bf7933d77d947763a 621 Gene3D G3DSA:3.10.350.10 503 556 1.1E-14 T 11-10-2018 IPR036779 LysM domain superfamily BED32_19235 f307b0db159d437bf7933d77d947763a 621 SUPERFAMILY SSF54106 576 619 5.62E-11 T 11-10-2018 BED32_19235 f307b0db159d437bf7933d77d947763a 621 Gene3D G3DSA:3.10.350.10 562 621 1.9E-17 T 11-10-2018 IPR036779 LysM domain superfamily BED32_19235 f307b0db159d437bf7933d77d947763a 621 Pfam PF11741 AMIN domain 21 115 1.6E-7 T 11-10-2018 IPR021731 AMIN domain BED32_19235 f307b0db159d437bf7933d77d947763a 621 Pfam PF01476 LysM domain 577 619 2.7E-14 T 11-10-2018 IPR018392 LysM domain BED32_19235 f307b0db159d437bf7933d77d947763a 621 Pfam PF01476 LysM domain 508 550 1.5E-11 T 11-10-2018 IPR018392 LysM domain BED32_09535 0d29711ac844d09c75f556297c767707 165 Gene3D G3DSA:2.30.30.40 20 145 1.9E-39 T 11-10-2018 BED32_09535 0d29711ac844d09c75f556297c767707 165 Gene3D G3DSA:2.40.50.180 37 146 1.9E-39 T 11-10-2018 BED32_09535 0d29711ac844d09c75f556297c767707 165 SUPERFAMILY SSF50341 17 157 4.58E-39 T 11-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 BED32_09535 0d29711ac844d09c75f556297c767707 165 SMART SM00260 14 151 8.7E-43 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_09535 0d29711ac844d09c75f556297c767707 165 Pfam PF01584 CheW-like domain 18 154 5.4E-37 T 11-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 BED32_17865 33655e6ee13078b2650b482039f760fb 285 Pfam PF03799 Cell division protein FtsQ 130 244 5.4E-27 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB BED32_17865 33655e6ee13078b2650b482039f760fb 285 Gene3D G3DSA:3.40.50.11690 127 259 1.3E-50 T 11-10-2018 BED32_17865 33655e6ee13078b2650b482039f760fb 285 Gene3D G3DSA:3.10.20.310 58 126 1.9E-33 T 11-10-2018 BED32_17865 33655e6ee13078b2650b482039f760fb 285 Pfam PF08478 POTRA domain, FtsQ-type 57 126 3.0E-22 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type BED32_17865 33655e6ee13078b2650b482039f760fb 285 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 26 252 24.831 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 BED32_08780 10b2cb4200ff3ea4fea328e75a485b70 462 Gene3D G3DSA:1.20.1740.10 21 456 3.1E-65 T 11-10-2018 BED32_08780 10b2cb4200ff3ea4fea328e75a485b70 462 Pfam PF13520 Amino acid permease 50 420 3.9E-33 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_08780 10b2cb4200ff3ea4fea328e75a485b70 462 PIRSF PIRSF006060 7 455 2.2E-70 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_17725 760b74823f0270f4e69babae72e72f2d 295 SUPERFAMILY SSF103481 45 139 9.55E-8 T 11-10-2018 BED32_17725 760b74823f0270f4e69babae72e72f2d 295 Pfam PF00892 EamA-like transporter family 157 284 1.3E-13 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_17725 760b74823f0270f4e69babae72e72f2d 295 SUPERFAMILY SSF103481 189 289 2.62E-12 T 11-10-2018 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 7 230 9.4E-91 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 SUPERFAMILY SSF46548 107 236 8.02E-40 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 Pfam PF13534 4Fe-4S dicluster domain 148 221 5.6E-10 T 11-10-2018 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 Gene3D G3DSA:1.10.1060.10 107 238 3.1E-59 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 SUPERFAMILY SSF54292 1 106 3.68E-31 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 Gene3D G3DSA:3.10.20.30 1 106 1.4E-34 T 11-10-2018 IPR012675 Beta-grasp domain superfamily BED32_07755 d971557a29a23d2ab16d6a42e5781a9c 238 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 111 5.1E-32 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 BED32_15890 b7021c50e3b020375edca6f316ca2779 75 ProSitePatterns PS00397 Site-specific recombinases active site. 5 13 - T 11-10-2018 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 BED32_07795 2c59852ee5b3c271010cc5463ba8a32c 45 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.8E-15 T 11-10-2018 IPR012994 Membrane bound YbgT-like BED32_07795 2c59852ee5b3c271010cc5463ba8a32c 45 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 29 8.3E-20 T 11-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 BED32_20015 1c0f8facc56d91edca874311ff1a6a5e 88 Pfam PF02416 mttA/Hcf106 family 4 49 9.0E-13 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 BED32_20015 1c0f8facc56d91edca874311ff1a6a5e 88 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 5.8E-21 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BED32_20015 1c0f8facc56d91edca874311ff1a6a5e 88 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 86 23.526 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 BED32_09335 2b41a6823974454d9218d17ae1526f75 444 PIRSF PIRSF029766 3 444 7.2E-165 T 11-10-2018 IPR011228 Uncharacterised conserved protein UCP029766 BED32_09335 2b41a6823974454d9218d17ae1526f75 444 Pfam PF00419 Fimbrial protein 261 444 1.7E-35 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_09335 2b41a6823974454d9218d17ae1526f75 444 SUPERFAMILY SSF49401 266 441 1.39E-7 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_20215 82afcb38fa05adb83f82f375297fd884 106 PIRSF PIRSF028538 1 106 3.7E-43 T 11-10-2018 IPR014949 Protein of unknown function DUF1820 BED32_20215 82afcb38fa05adb83f82f375297fd884 106 Pfam PF08850 Domain of unknown function (DUF1820) 7 99 3.3E-40 T 11-10-2018 IPR014949 Protein of unknown function DUF1820 BED32_19100 28153f8662839c3c3f3d4c60570b7527 187 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 185 3.1E-81 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ BED32_19100 28153f8662839c3c3f3d4c60570b7527 187 Gene3D G3DSA:3.40.30.10 38 185 6.7E-6 T 11-10-2018 BED32_19100 28153f8662839c3c3f3d4c60570b7527 187 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 23 183 6.0E-76 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ BED32_12460 3132e954b4e2ece02d2b42d8ae719dd6 645 Pfam PF03239 Iron permease FTR1 family 156 561 1.0E-80 T 11-10-2018 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0016020|GO:0033573|GO:0034755 BED32_01780 efd8ee9db2a24e0e934f4b2cb6704fef 329 SUPERFAMILY SSF53448 6 236 7.22E-49 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_01780 efd8ee9db2a24e0e934f4b2cb6704fef 329 Pfam PF00535 Glycosyl transferase family 2 7 123 2.8E-28 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_01780 efd8ee9db2a24e0e934f4b2cb6704fef 329 Gene3D G3DSA:3.90.550.10 4 205 1.3E-42 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_19415 02dcf4bcd6eb108582e4afa29c94f2db 437 SUPERFAMILY SSF102114 45 423 1.83E-89 T 11-10-2018 BED32_19415 02dcf4bcd6eb108582e4afa29c94f2db 437 Pfam PF04055 Radical SAM superfamily 59 228 2.3E-18 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_19415 02dcf4bcd6eb108582e4afa29c94f2db 437 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 16 427 1.9E-173 T 11-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW BED32_19415 02dcf4bcd6eb108582e4afa29c94f2db 437 SMART SM00729 53 275 8.2E-54 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 BED32_19415 02dcf4bcd6eb108582e4afa29c94f2db 437 Gene3D G3DSA:3.80.30.20 22 354 1.8E-84 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe BED32_13530 ca3bbaf37aada466575ac46c707a16fc 185 PIRSF PIRSF010252 1 178 5.5E-61 T 11-10-2018 IPR009809 Cell division protein ZapC BED32_13530 ca3bbaf37aada466575ac46c707a16fc 185 Pfam PF07126 Cell-division protein ZapC 3 168 1.2E-68 T 11-10-2018 IPR009809 Cell division protein ZapC BED32_13530 ca3bbaf37aada466575ac46c707a16fc 185 Hamap MF_00906 Cell division protein ZapC [zapC]. 2 176 39.49 T 11-10-2018 IPR009809 Cell division protein ZapC BED32_14080 d69d0e5406d11bf4648c08814fdf7f00 207 Pfam PF00486 Transcriptional regulatory protein, C terminal 7 78 2.0E-15 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_14080 d69d0e5406d11bf4648c08814fdf7f00 207 SMART SM00862 4 78 1.9E-12 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_14080 d69d0e5406d11bf4648c08814fdf7f00 207 SUPERFAMILY SSF46894 2 79 3.12E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_14080 d69d0e5406d11bf4648c08814fdf7f00 207 Gene3D G3DSA:1.10.10.10 1 81 8.8E-16 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 Pfam PF07690 Major Facilitator Superfamily 1 217 1.8E-32 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 Gene3D G3DSA:1.20.1250.20 181 383 2.4E-29 T 11-10-2018 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 SUPERFAMILY SSF103473 1 368 7.94E-65 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 54 78 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 111 133 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 315 338 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 81 102 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 23 42 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 PRINTS PR01035 Tetracycline resistance protein signature 280 300 5.3E-9 T 11-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 Gene3D G3DSA:1.20.1250.20 1 167 4.5E-34 T 11-10-2018 BED32_13300 fdc22b318a8aa89b38350f68e092744c 383 Hamap MF_01528 Multidrug resistance protein MdtG [mdtG]. 1 373 41.192 T 11-10-2018 IPR023692 Multidrug resistance protein MdtG GO:0005215|GO:0005886 BED32_15165 bb15e7c06474524f744cef9e4922c277 358 Pfam PF13406 Transglycosylase SLT domain 57 349 5.7E-91 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 BED32_15165 bb15e7c06474524f744cef9e4922c277 358 Gene3D G3DSA:1.10.530.10 98 352 8.7E-116 T 11-10-2018 BED32_15165 bb15e7c06474524f744cef9e4922c277 358 Gene3D G3DSA:1.10.8.350 60 232 8.7E-116 T 11-10-2018 BED32_15165 bb15e7c06474524f744cef9e4922c277 358 SUPERFAMILY SSF53955 51 351 1.03E-91 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_15165 bb15e7c06474524f744cef9e4922c277 358 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 61 352 2.1E-120 T 11-10-2018 IPR011757 Lytic transglycosylase MltB BED32_18430 2f0bc49a753ac1335183c7229c256bd1 381 SUPERFAMILY SSF53807 30 349 5.1E-44 T 11-10-2018 BED32_18430 2f0bc49a753ac1335183c7229c256bd1 381 Pfam PF01497 Periplasmic binding protein 70 325 9.9E-23 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain BED32_18430 2f0bc49a753ac1335183c7229c256bd1 381 Gene3D G3DSA:3.40.50.1980 29 378 8.6E-95 T 11-10-2018 BED32_20660 819d9ebd443706feb1020549e76e9bf3 216 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 6 204 1.6E-65 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 BED32_20660 819d9ebd443706feb1020549e76e9bf3 216 Pfam PF01292 Prokaryotic cytochrome b561 9 184 2.5E-22 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BED32_20660 819d9ebd443706feb1020549e76e9bf3 216 Gene3D G3DSA:1.20.950.20 1 215 3.3E-73 T 11-10-2018 BED32_20660 819d9ebd443706feb1020549e76e9bf3 216 SUPERFAMILY SSF81342 4 211 3.53E-56 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BED32_21145 773d745af3215b09b63ee6c5fbedc7fe 394 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 193 392 1.0E-54 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 BED32_21145 773d745af3215b09b63ee6c5fbedc7fe 394 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 10 82 2.7E-16 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 1.3E-30 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 Gene3D G3DSA:2.40.50.140 1 68 6.6E-30 T 11-10-2018 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 PRINTS PR00050 Cold shock protein signature 42 60 9.0E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 PRINTS PR00050 Cold shock protein signature 27 36 9.0E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 PRINTS PR00050 Cold shock protein signature 6 21 9.0E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 SMART SM00357 5 69 4.8E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 11-10-2018 IPR019844 Cold-shock conserved site BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 SUPERFAMILY SSF50249 4 68 1.1E-24 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold BED32_13630 b52c9cf5b8ce2ddc34217658255fd5d9 69 PIRSF PIRSF002599 1 69 3.1E-24 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 BED32_08555 63d2e12671eacdf589b254a54cd5b0ee 231 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 4 226 1.3E-99 T 11-10-2018 IPR005261 Conserved hypothetical protein CHP00659 BED32_08555 63d2e12671eacdf589b254a54cd5b0ee 231 Pfam PF04172 LrgB-like family 12 223 5.4E-78 T 11-10-2018 IPR007300 CidB/LrgB family BED32_18400 fa3fac1f17232405edf5a8b68f18eb98 330 SUPERFAMILY SSF51430 1 311 2.36E-104 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_18400 fa3fac1f17232405edf5a8b68f18eb98 330 Gene3D G3DSA:3.20.20.100 1 328 2.6E-121 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_18400 fa3fac1f17232405edf5a8b68f18eb98 330 Pfam PF00248 Aldo/keto reductase family 16 308 1.0E-78 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_02875 b8b7c5e579fedf49d5fe7642c1e8b62a 273 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 5.0E-22 T 11-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal BED32_02875 b8b7c5e579fedf49d5fe7642c1e8b62a 273 Pfam PF01841 Transglutaminase-like superfamily 124 217 1.4E-22 T 11-10-2018 IPR002931 Transglutaminase-like BED32_02875 b8b7c5e579fedf49d5fe7642c1e8b62a 273 Gene3D G3DSA:3.10.620.30 68 251 1.0E-45 T 11-10-2018 BED32_02875 b8b7c5e579fedf49d5fe7642c1e8b62a 273 SUPERFAMILY SSF54001 50 257 1.31E-41 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily BED32_02875 b8b7c5e579fedf49d5fe7642c1e8b62a 273 SMART SM00460 158 220 8.2E-19 T 11-10-2018 IPR002931 Transglutaminase-like BED32_01700 ab679931733d2afe9609d7a94e7a6453 503 Pfam PF05872 Bacterial protein of unknown function (DUF853) 7 503 1.1E-232 T 11-10-2018 IPR033186 Helicase HerA-like C-terminal BED32_01700 ab679931733d2afe9609d7a94e7a6453 503 SMART SM00382 23 330 0.0087 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_01700 ab679931733d2afe9609d7a94e7a6453 503 SUPERFAMILY SSF52540 22 370 2.0E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01700 ab679931733d2afe9609d7a94e7a6453 503 Gene3D G3DSA:3.40.50.300 8 145 4.9E-10 T 11-10-2018 BED32_01700 ab679931733d2afe9609d7a94e7a6453 503 Gene3D G3DSA:3.40.50.300 200 376 1.4E-19 T 11-10-2018 BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 257 1.1E-24 T 11-10-2018 IPR010930 Flagellar basal-body/hook protein, C-terminal domain BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 Pfam PF00460 Flagella basal body rod protein 5 35 5.3E-12 T 11-10-2018 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-10-2018 IPR019776 Flagellar basal body rod protein, conserved site BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 1.7E-107 T 11-10-2018 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 SUPERFAMILY SSF117143 92 222 1.7E-35 T 11-10-2018 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 144 243 3.6E-33 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BED32_03905 36e36347a55aed1223bc556be5f2d76f 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 3.3E-43 T 11-10-2018 IPR020013 Flagellar hook-basal body protein, FlgE/F/G BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 Gene3D G3DSA:3.10.105.10 299 514 2.6E-211 T 11-10-2018 BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 Gene3D G3DSA:3.90.76.10 73 196 2.6E-211 T 11-10-2018 BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 88 110 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 465 2.8E-87 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 SUPERFAMILY SSF53850 37 527 3.14E-148 T 11-10-2018 BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 PIRSF PIRSF002741 4 544 4.0E-115 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_12105 8c7083250b8ea0d643dcdb87b8174a19 545 Gene3D G3DSA:3.40.190.10 43 526 2.6E-211 T 11-10-2018 BED32_06185 698aa3c6fda474dff1c642806d05cbe6 122 Pfam PF10757 Biofilm formation regulator YbaJ 1 118 2.8E-65 T 11-10-2018 IPR019693 Biofilm formation regulator YbaJ BED32_10790 cc9fd0f2a31fd00d6316ebfcf6769ec6 367 Pfam PF01594 AI-2E family transporter 17 346 8.3E-50 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like BED32_04015 e28a0b5d71a7d6f5f612caf8e5443295 564 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 540 549 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 BED32_04015 e28a0b5d71a7d6f5f612caf8e5443295 564 Gene3D G3DSA:1.10.645.10 1 549 1.5E-218 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04015 e28a0b5d71a7d6f5f612caf8e5443295 564 SUPERFAMILY SSF56762 1 549 2.49E-169 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_04015 e28a0b5d71a7d6f5f612caf8e5443295 564 Pfam PF00374 Nickel-dependent hydrogenase 39 549 1.5E-205 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 BED32_04015 e28a0b5d71a7d6f5f612caf8e5443295 564 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 39 64 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 BED32_12590 f2d683fcd89a86b4419f3e02a2df2e36 380 Pfam PF05954 Phage late control gene D protein (GPD) 65 359 1.7E-34 T 11-10-2018 BED32_12590 f2d683fcd89a86b4419f3e02a2df2e36 380 SUPERFAMILY SSF69279 15 187 3.17E-26 T 11-10-2018 BED32_11780 6f9a702f7009de1a89712d18da7481c3 67 Pfam PF10965 Protein of unknown function (DUF2767) 3 65 4.6E-22 T 11-10-2018 IPR024493 Fumarase D KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 BED32_11780 6f9a702f7009de1a89712d18da7481c3 67 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 5 65 2.0E-7 T 11-10-2018 BED32_05870 1ba8ab7bb90c8fb58d1ac905344753a0 439 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 415 1.2E-155 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BED32_05870 1ba8ab7bb90c8fb58d1ac905344753a0 439 Pfam PF05525 Branched-chain amino acid transport protein 7 425 5.9E-152 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 Hamap MF_02028 UDP-N-acetylglucosamine 2-epimerase [wecB]. 1 359 68.317 T 11-10-2018 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB GO:0008761|GO:0009246 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 Gene3D G3DSA:3.40.50.2000 172 341 4.5E-147 T 11-10-2018 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 SUPERFAMILY SSF53756 1 357 7.33E-132 T 11-10-2018 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 7 355 9.6E-128 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 Gene3D G3DSA:3.40.50.2000 1 352 4.5E-147 T 11-10-2018 BED32_20470 7ea8b62682ed4d409157ef068c05d78c 361 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 1 357 3.7E-161 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Pfam PF14841 FliG middle domain 137 203 5.7E-21 T 11-10-2018 IPR032779 Flagellar motor switch protein FliG, middle domain BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Gene3D G3DSA:1.10.220.30 113 210 6.7E-21 T 11-10-2018 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 SUPERFAMILY SSF48029 27 128 3.92E-12 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Pfam PF01706 FliG C-terminal domain 235 341 6.0E-26 T 11-10-2018 IPR023087 Flagellar motor switch protein FliG, C-terminal BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 25 41 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 290 316 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 54 80 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 134 157 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 214 239 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 PRINTS PR00954 Flagellar motor switch protein FliG signature 266 286 1.1E-18 T 11-10-2018 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Pfam PF14842 FliG N-terminal domain 27 121 9.4E-17 T 11-10-2018 IPR028263 Flagellar motor switch protein FliG, N-terminal domain BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Gene3D G3DSA:1.10.220.30 24 106 2.4E-11 T 11-10-2018 BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 SUPERFAMILY SSF48029 136 342 1.22E-50 T 11-10-2018 IPR011002 Flagellar motor switch protein FliG, alpha-helical BED32_03845 1fb85f237f1f065cfc7279062fc7037e 351 Gene3D G3DSA:1.10.220.30 215 348 5.6E-26 T 11-10-2018 BED32_12550 36de11dc3d20e98259ee53d31e109a7a 218 Pfam PF08242 Methyltransferase domain 54 151 3.8E-8 T 11-10-2018 IPR013217 Methyltransferase type 12 BED32_12550 36de11dc3d20e98259ee53d31e109a7a 218 PIRSF PIRSF011491 1 218 4.3E-91 T 11-10-2018 IPR016584 Methyltransferase VrtF-like BED32_12550 36de11dc3d20e98259ee53d31e109a7a 218 SUPERFAMILY SSF53335 18 184 1.65E-15 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_12550 36de11dc3d20e98259ee53d31e109a7a 218 Gene3D G3DSA:3.40.50.150 29 210 1.3E-14 T 11-10-2018 BED32_14050 6f99975449ae6d16bddef6b6413c9baf 364 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 20 361 8.4E-122 T 11-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 BED32_14050 6f99975449ae6d16bddef6b6413c9baf 364 Pfam PF03601 Conserved hypothetical protein 698 22 341 4.8E-103 T 11-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 2.9E-107 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 PIRSF PIRSF002155 1 227 6.0E-78 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 SUPERFAMILY SSF56808 6 225 1.18E-82 T 11-10-2018 IPR023674 Ribosomal protein L1-like BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 Gene3D G3DSA:3.40.50.790 68 159 8.4E-81 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 43.443 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 Gene3D G3DSA:3.30.190.20 25 222 8.4E-81 T 11-10-2018 BED32_19850 cbf0d0004008679f39e851c6366c3c6e 234 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 1.0E-51 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 2.5E-99 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 36.58 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 Pfam PF02401 LytB protein 3 283 2.0E-92 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 Gene3D G3DSA:3.40.1010.20 6 283 8.1E-112 T 11-10-2018 BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 Gene3D G3DSA:3.40.1010.20 98 197 8.1E-112 T 11-10-2018 BED32_18130 7e5dcd0b1f16146665e9f479cc06de14 317 Gene3D G3DSA:3.40.50.11270 12 97 8.1E-112 T 11-10-2018 BED32_14540 a16ca880de906c7ae213fcaa98cc9def 163 Pfam PF06496 Protein of unknown function (DUF1097) 8 141 1.3E-36 T 11-10-2018 IPR009476 Protein of unknown function DUF1097 BED32_03195 406dc89a4e5e07160770f72ce408f064 131 Pfam PF07681 DoxX 8 88 4.2E-16 T 11-10-2018 IPR032808 DoxX family BED32_15865 b207878e686a00ae4763958a5965e2a4 400 Pfam PF00872 Transposase, Mutator family 10 373 5.5E-103 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_18110 5ee8269bc45a443b4bd7a21cda5527b6 204 PIRSF PIRSF006324 1 204 5.8E-58 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_18110 5ee8269bc45a443b4bd7a21cda5527b6 204 Pfam PF01810 LysE type translocator 15 203 1.3E-38 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_03700 91a15345f5db98ab61dec312eec8fe1e 36 SUPERFAMILY SSF46689 2 35 6.45E-5 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03700 91a15345f5db98ab61dec312eec8fe1e 36 Pfam PF01527 Transposase 2 35 3.6E-9 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_09700 a659c31f25ca0502f8ecf186cf5aeff1 478 Pfam PF05598 Transposase domain (DUF772) 52 127 3.7E-23 T 11-10-2018 IPR008490 Transposase InsH, N-terminal BED32_09700 a659c31f25ca0502f8ecf186cf5aeff1 478 Pfam PF13751 Transposase DDE domain 328 446 1.6E-26 T 11-10-2018 IPR025668 Transposase DDE domain BED32_20285 801214a0a792e2f085f6de069f34de99 206 TIGRFAM TIGR00949 2A76: homoserine/Threonine efflux protein 18 202 6.8E-62 T 11-10-2018 IPR004778 Homoserine/Threonine efflux protein GO:0016021 BED32_20285 801214a0a792e2f085f6de069f34de99 206 Pfam PF01810 LysE type translocator 14 205 7.8E-53 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_20285 801214a0a792e2f085f6de069f34de99 206 PIRSF PIRSF006324 1 206 4.9E-41 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_00215 6df4075249cf35a346b1c6a28e8bcf27 116 SUPERFAMILY SSF64449 1 110 4.45E-47 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_00215 6df4075249cf35a346b1c6a28e8bcf27 116 Pfam PF09013 YopH, N-terminal 38 107 1.6E-9 T 11-10-2018 IPR015103 Protein-tyrosine phosphatase, YopH, N-terminal GO:0004725|GO:0006470|GO:0009405 BED32_00215 6df4075249cf35a346b1c6a28e8bcf27 116 Gene3D G3DSA:3.30.1570.10 2 113 4.1E-22 T 11-10-2018 IPR036484 Protein-tyrosine phosphatase, YopH, N-terminal domain superfamily BED32_04885 2feea188e58222ada38c405fa85a90af 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_04885 2feea188e58222ada38c405fa85a90af 339 Pfam PF01548 Transposase 6 146 4.4E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04135 c204e6c16619d439d3910ce569e5049c 467 Gene3D G3DSA:1.20.1250.20 32 465 4.8E-63 T 11-10-2018 BED32_04135 c204e6c16619d439d3910ce569e5049c 467 SUPERFAMILY SSF103473 21 461 9.02E-65 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_04135 c204e6c16619d439d3910ce569e5049c 467 Pfam PF00083 Sugar (and other) transporter 80 461 6.4E-29 T 11-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 BED32_12945 60c9405815da0533011f74d1c0936b40 79 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 23 75 4.0E-10 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 BED32_12945 60c9405815da0533011f74d1c0936b40 79 Gene3D G3DSA:3.40.718.10 17 79 1.3E-15 T 11-10-2018 BED32_12945 60c9405815da0533011f74d1c0936b40 79 SUPERFAMILY SSF53659 24 79 6.87E-14 T 11-10-2018 BED32_18870 d0a65193a3fe41106985d8034dcd5591 438 PIRSF PIRSF006054 7 435 9.4E-160 T 11-10-2018 IPR021144 Uncharacterised protein family UPF0597 BED32_18870 d0a65193a3fe41106985d8034dcd5591 438 Pfam PF03313 Serine dehydratase alpha chain 187 428 1.6E-45 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit BED32_18870 d0a65193a3fe41106985d8034dcd5591 438 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 9 433 34.183 T 11-10-2018 IPR021144 Uncharacterised protein family UPF0597 BED32_15000 cd060dfb7b9619298a47de5411d6dfc1 339 Pfam PF01548 Transposase 6 146 6.2E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_15000 cd060dfb7b9619298a47de5411d6dfc1 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 9.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_10345 b4efe7c3bcd7b004ad40366808f35231 281 SUPERFAMILY SSF103481 39 137 4.32E-11 T 11-10-2018 BED32_10345 b4efe7c3bcd7b004ad40366808f35231 281 Pfam PF00892 EamA-like transporter family 144 278 3.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_10345 b4efe7c3bcd7b004ad40366808f35231 281 SUPERFAMILY SSF103481 185 279 9.29E-15 T 11-10-2018 BED32_15420 72e593820a63172f6d111f6aa21e31a2 154 Gene3D G3DSA:2.60.120.370 1 154 1.9E-45 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily BED32_15420 72e593820a63172f6d111f6aa21e31a2 154 Pfam PF04074 Domain of unknown function (DUF386) 1 150 9.2E-43 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_15420 72e593820a63172f6d111f6aa21e31a2 154 SUPERFAMILY SSF51197 1 154 4.94E-47 T 11-10-2018 BED32_15420 72e593820a63172f6d111f6aa21e31a2 154 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 1.2E-47 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family BED32_05735 677f81f71ef1766b885f0584a997c8af 152 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 152 40.228 T 11-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 BED32_05735 677f81f71ef1766b885f0584a997c8af 152 SUPERFAMILY SSF53271 4 144 3.93E-30 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like BED32_05735 677f81f71ef1766b885f0584a997c8af 152 Gene3D G3DSA:3.40.50.2020 1 152 1.1E-40 T 11-10-2018 BED32_05735 677f81f71ef1766b885f0584a997c8af 152 Pfam PF00156 Phosphoribosyl transferase domain 10 145 2.2E-17 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 BED32_04630 4828c6d5f31c4c3a25683ee45a86446c 250 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 2 250 38.815 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BED32_04630 4828c6d5f31c4c3a25683ee45a86446c 250 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 3 233 2.2E-73 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BED32_04630 4828c6d5f31c4c3a25683ee45a86446c 250 SUPERFAMILY SSF64167 2 246 4.97E-79 T 11-10-2018 BED32_04630 4828c6d5f31c4c3a25683ee45a86446c 250 Pfam PF01975 Survival protein SurE 4 182 6.3E-55 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BED32_04630 4828c6d5f31c4c3a25683ee45a86446c 250 Gene3D G3DSA:3.40.1210.10 1 250 3.9E-100 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 BED32_16390 b88cccf474b77890442e0d08f774551e 268 SMART SM00342 182 264 6.9E-17 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_16390 b88cccf474b77890442e0d08f774551e 268 SUPERFAMILY SSF51182 7 88 6.67E-13 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_16390 b88cccf474b77890442e0d08f774551e 268 Gene3D G3DSA:2.60.120.10 4 95 3.2E-9 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_16390 b88cccf474b77890442e0d08f774551e 268 Pfam PF07883 Cupin domain 21 73 7.9E-7 T 11-10-2018 IPR013096 Cupin 2, conserved barrel BED32_16390 b88cccf474b77890442e0d08f774551e 268 Gene3D G3DSA:1.10.10.60 164 267 1.7E-18 T 11-10-2018 BED32_16390 b88cccf474b77890442e0d08f774551e 268 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 218 260 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 BED32_16390 b88cccf474b77890442e0d08f774551e 268 SUPERFAMILY SSF46689 217 267 2.06E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_16390 b88cccf474b77890442e0d08f774551e 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 233 248 3.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_16390 b88cccf474b77890442e0d08f774551e 268 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 264 3.5E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 BED32_16390 b88cccf474b77890442e0d08f774551e 268 Pfam PF12833 Helix-turn-helix domain 192 265 6.5E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_12995 14c1b96b50833d8aa85c6b316b9a247d 199 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 1 188 4.0E-95 T 11-10-2018 BED32_12995 14c1b96b50833d8aa85c6b316b9a247d 199 SUPERFAMILY SSF101322 1 198 1.16E-78 T 11-10-2018 IPR035932 HflD-like superfamily BED32_12995 14c1b96b50833d8aa85c6b316b9a247d 199 Gene3D G3DSA:1.10.3890.10 1 199 1.5E-76 T 11-10-2018 IPR035932 HflD-like superfamily BED32_12995 14c1b96b50833d8aa85c6b316b9a247d 199 Pfam PF04356 Protein of unknown function (DUF489) 1 189 1.1E-75 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD BED32_12995 14c1b96b50833d8aa85c6b316b9a247d 199 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 197 33.625 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD BED32_11220 244e95384180d965217fea0725f11ff1 280 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 218 229 - T 11-10-2018 IPR033116 Serine proteases, trypsin family, serine active site BED32_11220 244e95384180d965217fea0725f11ff1 280 Gene3D G3DSA:2.40.10.10 55 162 4.2E-28 T 11-10-2018 BED32_11220 244e95384180d965217fea0725f11ff1 280 Gene3D G3DSA:2.40.10.10 40 243 4.2E-28 T 11-10-2018 BED32_11220 244e95384180d965217fea0725f11ff1 280 Pfam PF00089 Trypsin 50 244 2.2E-14 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 BED32_11220 244e95384180d965217fea0725f11ff1 280 SMART SM00020 47 254 0.0013 T 11-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 BED32_11220 244e95384180d965217fea0725f11ff1 280 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 81 86 - T 11-10-2018 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 BED32_11220 244e95384180d965217fea0725f11ff1 280 SUPERFAMILY SSF50494 7 270 3.25E-30 T 11-10-2018 IPR009003 Peptidase S1, PA clan BED32_11220 244e95384180d965217fea0725f11ff1 280 PRINTS PR00839 V8 serine protease family signature 233 245 1.6E-17 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 BED32_11220 244e95384180d965217fea0725f11ff1 280 PRINTS PR00839 V8 serine protease family signature 70 87 1.6E-17 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 BED32_11220 244e95384180d965217fea0725f11ff1 280 PRINTS PR00839 V8 serine protease family signature 179 192 1.6E-17 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 BED32_11220 244e95384180d965217fea0725f11ff1 280 PRINTS PR00839 V8 serine protease family signature 45 62 1.6E-17 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 BED32_11220 244e95384180d965217fea0725f11ff1 280 PRINTS PR00839 V8 serine protease family signature 213 229 1.6E-17 T 11-10-2018 IPR008256 Peptidase S1B GO:0006508|GO:0008236 BED32_05220 cd463a667adf5a747142af989252b783 249 Pfam PF00795 Carbon-nitrogen hydrolase 2 234 5.1E-31 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_05220 cd463a667adf5a747142af989252b783 249 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 130 150 - T 11-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site BED32_05220 cd463a667adf5a747142af989252b783 249 SUPERFAMILY SSF56317 2 242 1.96E-57 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_05220 cd463a667adf5a747142af989252b783 249 Gene3D G3DSA:3.60.110.10 1 249 2.1E-79 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_20635 ac88a41f0a71f644c92115967f4d2492 330 Pfam PF01757 Acyltransferase family 6 317 3.4E-30 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BED32_20635 ac88a41f0a71f644c92115967f4d2492 330 Hamap MF_01949 O-acetyltransferase WecH [wecH]. 1 330 39.68 T 11-10-2018 IPR032905 O-acetyltransferase WecH GO:0009246|GO:0016413 BED32_14720 bd4465f1bb06079fb3fe1989098203ac 238 SUPERFAMILY SSF161098 17 214 1.31E-37 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14720 bd4465f1bb06079fb3fe1989098203ac 238 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 40 219 1.1E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_14720 bd4465f1bb06079fb3fe1989098203ac 238 Gene3D G3DSA:1.10.3720.10 8 229 4.3E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14720 bd4465f1bb06079fb3fe1989098203ac 238 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 122 7.7E-14 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_18195 a839ed523369ce870c08c85a9cfe872c 455 Pfam PF07690 Major Facilitator Superfamily 77 403 5.3E-27 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_18195 a839ed523369ce870c08c85a9cfe872c 455 Gene3D G3DSA:1.20.1250.20 31 444 8.6E-58 T 11-10-2018 BED32_18195 a839ed523369ce870c08c85a9cfe872c 455 SUPERFAMILY SSF103473 5 436 1.83E-62 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 3 385 9.0E-131 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 Gene3D G3DSA:3.50.50.60 3 333 4.9E-97 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 Gene3D G3DSA:3.30.9.50 78 267 4.9E-97 T 11-10-2018 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 9.5E-15 T 11-10-2018 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 9.5E-15 T 11-10-2018 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 2 24 9.5E-15 T 11-10-2018 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 9.5E-15 T 11-10-2018 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 Pfam PF01494 FAD binding domain 2 340 2.3E-26 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 292 305 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 3 385 3.1E-146 T 11-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 BED32_17500 f5a38b2d7b8bd1375d1cc7f33b69f04f 389 SUPERFAMILY SSF51905 2 379 8.19E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_18515 9e666ee5aa4df07d0a62ee6e216d51cb 355 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 2.3E-149 T 11-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 BED32_18515 9e666ee5aa4df07d0a62ee6e216d51cb 355 Gene3D G3DSA:3.40.50.10440 11 183 1.6E-64 T 11-10-2018 BED32_18515 9e666ee5aa4df07d0a62ee6e216d51cb 355 Pfam PF02733 Dak1 domain 17 351 6.3E-127 T 11-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 BED32_18515 9e666ee5aa4df07d0a62ee6e216d51cb 355 Gene3D G3DSA:3.30.1180.20 184 355 3.0E-62 T 11-10-2018 BED32_18515 9e666ee5aa4df07d0a62ee6e216d51cb 355 SUPERFAMILY SSF82549 11 352 3.4E-125 T 11-10-2018 BED32_05695 05a056094f3239c663ff238f1e212b61 75 Pfam PF04400 (Na+)-NQR maturation NqrM 23 65 1.4E-22 T 11-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 13 326 5.3E-175 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 Gene3D G3DSA:3.40.190.10 114 325 1.9E-138 T 11-10-2018 BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 145 153 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 Pfam PF13531 Bacterial extracellular solute-binding protein 31 280 2.3E-45 T 11-10-2018 BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 SUPERFAMILY SSF53850 21 326 2.18E-91 T 11-10-2018 BED32_20855 88224f239faeb3f2b84d587d0ed22899 329 Gene3D G3DSA:3.40.190.10 27 295 1.9E-138 T 11-10-2018 BED32_03765 7ac7025620dd51b66a8fa6efa631b496 355 Pfam PF01032 FecCD transport family 40 348 1.6E-88 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_03765 7ac7025620dd51b66a8fa6efa631b496 355 Gene3D G3DSA:1.10.3470.10 28 354 6.8E-90 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_03765 7ac7025620dd51b66a8fa6efa631b496 355 SUPERFAMILY SSF81345 27 349 1.24E-78 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_21940 a73fa766afcfef219ef8a1ff5a583767 458 Pfam PF06122 Conjugative relaxosome accessory transposon protein 23 363 9.2E-70 T 11-10-2018 IPR010927 Type IV conjugative transfer system protein TraH BED32_19485 c1bbb072dafad5e1204a0b263ac00d35 83 Gene3D G3DSA:1.10.1220.170 41 83 1.0E-16 T 11-10-2018 BED32_19485 c1bbb072dafad5e1204a0b263ac00d35 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 7.6E-22 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM BED32_19485 c1bbb072dafad5e1204a0b263ac00d35 83 SUPERFAMILY SSF143120 1 80 2.75E-25 T 11-10-2018 IPR036165 YefM-like superfamily BED32_19485 c1bbb072dafad5e1204a0b263ac00d35 83 Gene3D G3DSA:3.40.1620.10 1 40 4.2E-23 T 11-10-2018 BED32_19485 c1bbb072dafad5e1204a0b263ac00d35 83 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 56 1.6E-11 T 11-10-2018 BED32_04875 e407c2e363c1b74173c183cb3f4959f0 283 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 276 6.4E-96 T 11-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 BED32_08560 8a9d1559c4ac9cff75d66b3f64aac240 135 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 4 123 23.844 T 11-10-2018 IPR022957 Uncharacterised protein family UPF0299 BED32_08560 8a9d1559c4ac9cff75d66b3f64aac240 135 Pfam PF03788 LrgA family 23 113 3.6E-30 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 BED32_16750 1bf44148db032d8172c3735f41d7add5 135 Pfam PF16358 RcsF lipoprotein 31 133 2.4E-53 T 11-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 BED32_16750 1bf44148db032d8172c3735f41d7add5 135 Hamap MF_00976 Outer membrane lipoprotein RcsF [rcsF]. 1 134 37.323 T 11-10-2018 IPR030852 Outer membrane lipoprotein RcsF GO:0009279|GO:0035556 BED32_16750 1bf44148db032d8172c3735f41d7add5 135 Gene3D G3DSA:3.30.110.70 31 135 1.2E-38 T 11-10-2018 BED32_02700 82c2c0583fe5a34d138c327926267400 113 Gene3D G3DSA:3.30.1380.10 1 107 2.1E-13 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_02700 82c2c0583fe5a34d138c327926267400 113 Pfam PF13539 D-alanyl-D-alanine carboxypeptidase 47 107 4.1E-11 T 11-10-2018 IPR039561 Peptidase M15C GO:0008233 BED32_02700 82c2c0583fe5a34d138c327926267400 113 SUPERFAMILY SSF55166 11 107 6.28E-16 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_04745 d3c03f79de361d0460201e6cfc9f5925 271 Gene3D G3DSA:3.10.129.10 2 118 2.7E-11 T 11-10-2018 BED32_04745 d3c03f79de361d0460201e6cfc9f5925 271 Pfam PF01575 MaoC like domain 11 48 3.4E-5 T 11-10-2018 IPR002539 MaoC-like dehydratase domain BED32_04745 d3c03f79de361d0460201e6cfc9f5925 271 SUPERFAMILY SSF54637 10 115 3.15E-10 T 11-10-2018 IPR029069 HotDog domain superfamily BED32_05180 77cccfb54c8aef8de3e78f73099d72c3 66 Pfam PF13318 Protein of unknown function (DUF4089) 15 64 4.5E-20 T 11-10-2018 IPR025148 Protein of unknown function DUF4089 BED32_14860 8545113c3a89d77e67014482e4518272 100 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 7 99 2.3E-34 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BED32_14860 8545113c3a89d77e67014482e4518272 100 SUPERFAMILY SSF46973 1 100 6.93E-35 T 11-10-2018 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily GO:0009401 BED32_14860 8545113c3a89d77e67014482e4518272 100 PIRSF PIRSF000699 1 100 5.8E-35 T 11-10-2018 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit GO:0009401 BED32_14860 8545113c3a89d77e67014482e4518272 100 Gene3D G3DSA:1.20.58.280 2 100 7.4E-37 T 11-10-2018 BED32_01815 d73ebcb1c6ab5a5d7d44eab1d295feae 274 SUPERFAMILY SSF54534 46 253 3.14E-65 T 11-10-2018 BED32_01815 d73ebcb1c6ab5a5d7d44eab1d295feae 274 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 164 250 6.4E-29 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain BED32_01815 d73ebcb1c6ab5a5d7d44eab1d295feae 274 Gene3D G3DSA:3.10.50.40 147 263 1.1E-42 T 11-10-2018 BED32_01815 d73ebcb1c6ab5a5d7d44eab1d295feae 274 Gene3D G3DSA:1.10.287.460 29 146 2.0E-29 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 BED32_01815 d73ebcb1c6ab5a5d7d44eab1d295feae 274 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 36 156 6.9E-37 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 BED32_18615 5a33c825d4666710f019791eb5156695 99 Gene3D G3DSA:1.10.10.60 10 89 3.5E-6 T 11-10-2018 BED32_18615 5a33c825d4666710f019791eb5156695 99 SUPERFAMILY SSF46689 5 92 4.3E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_18615 5a33c825d4666710f019791eb5156695 99 Pfam PF01527 Transposase 4 73 1.6E-11 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_15485 2a9d9019938e341c702b46fb8a25e870 191 SUPERFAMILY SSF55811 9 188 2.17E-51 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_15485 2a9d9019938e341c702b46fb8a25e870 191 Gene3D G3DSA:3.90.79.10 2 190 2.1E-57 T 11-10-2018 BED32_15485 2a9d9019938e341c702b46fb8a25e870 191 Pfam PF00293 NUDIX domain 45 169 6.0E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_15485 2a9d9019938e341c702b46fb8a25e870 191 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 9 185 4.9E-55 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 BED32_10925 5f7aa56fcaf8595ad86e92c4b82c4408 202 Pfam PF16925 Bacterial transcriptional repressor C-terminal 87 188 3.3E-11 T 11-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal BED32_10925 5f7aa56fcaf8595ad86e92c4b82c4408 202 Gene3D G3DSA:1.10.357.10 2 200 5.5E-60 T 11-10-2018 BED32_10925 5f7aa56fcaf8595ad86e92c4b82c4408 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 56 2.6E-7 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 BED32_10925 5f7aa56fcaf8595ad86e92c4b82c4408 202 SUPERFAMILY SSF46689 2 76 3.59E-14 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_10925 5f7aa56fcaf8595ad86e92c4b82c4408 202 SUPERFAMILY SSF48498 85 196 8.9E-24 T 11-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily BED32_00280 0ef64cae5eb5302e10197540f899c0b9 69 SUPERFAMILY SSF46689 2 62 1.15E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_10775 ce39f6824cc9b68dbcbc2c033c89e4ef 238 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 1 237 63.064 T 11-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein BED32_10775 ce39f6824cc9b68dbcbc2c033c89e4ef 238 Pfam PF03618 Kinase/pyrophosphorylase 2 228 9.7E-63 T 11-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 BED32_10775 ce39f6824cc9b68dbcbc2c033c89e4ef 238 SUPERFAMILY SSF47454 138 195 4.97E-5 T 11-10-2018 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily GO:0003677|GO:0006355 BED32_18790 7701999a694e64955991fa43f5567f3a 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 10 72 3.6E-6 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM BED32_18790 7701999a694e64955991fa43f5567f3a 83 SUPERFAMILY SSF143120 11 66 6.15E-6 T 11-10-2018 IPR036165 YefM-like superfamily BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 201 225 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 3.7E-63 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 225 2.8E-83 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 BED32_14985 b1ba29d99afcc7e19e3ecf8859872d39 245 Pfam PF01578 Cytochrome C assembly protein 20 184 7.5E-33 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BED32_05445 aeb990f26d9c12ba180282fb42204084 74 Pfam PF11133 Head fiber protein 24 73 7.2E-12 T 11-10-2018 IPR022741 Bacteriophage B103, Gp8, head fibre BED32_05445 aeb990f26d9c12ba180282fb42204084 74 ProDom PD012849 LATE FIBER GP8.5 HEAD 25 73 1.0E-5 T 11-10-2018 BED32_11915 4127b8879dfb9c7604b0c1803c54dfc0 111 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 9 102 21.78 T 11-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 BED32_11915 4127b8879dfb9c7604b0c1803c54dfc0 111 Pfam PF06305 Lipopolysaccharide assembly protein A domain 31 94 5.5E-20 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 BED32_19190 4e79b6b12d798e13d6e2f21952bccc2e 125 Pfam PF02082 Transcriptional regulator 1 66 1.7E-17 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type BED32_19190 4e79b6b12d798e13d6e2f21952bccc2e 125 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 33 51 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site BED32_19190 4e79b6b12d798e13d6e2f21952bccc2e 125 Gene3D G3DSA:1.10.10.10 1 120 7.1E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_19190 4e79b6b12d798e13d6e2f21952bccc2e 125 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 2 112 5.4E-31 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type BED32_19190 4e79b6b12d798e13d6e2f21952bccc2e 125 SUPERFAMILY SSF46785 4 115 1.36E-28 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_05345 3d32f4faf90cdbf73d34b26ed4311f94 64 ProDom PD054632 CRO REPRESSOR TRANSCRIPTION REGULATORY 3D-STRUCTURE DNA-BINDING DIRECT EARLY REGULATION SEQUENCING 3 62 2.0E-24 T 11-10-2018 IPR000655 Regulatory protein cro GO:0003677|GO:0006355 BED32_05345 3d32f4faf90cdbf73d34b26ed4311f94 64 PIRSF PIRSF003217 1 64 7.9E-36 T 11-10-2018 IPR000655 Regulatory protein cro GO:0003677|GO:0006355 BED32_05345 3d32f4faf90cdbf73d34b26ed4311f94 64 Gene3D G3DSA:3.30.240.10 1 64 1.3E-29 T 11-10-2018 IPR038202 Regulatory protein cro superfamily BED32_05345 3d32f4faf90cdbf73d34b26ed4311f94 64 SUPERFAMILY SSF47413 1 62 4.5E-27 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_05345 3d32f4faf90cdbf73d34b26ed4311f94 64 Pfam PF09048 Cro 1 59 5.5E-27 T 11-10-2018 IPR000655 Regulatory protein cro GO:0003677|GO:0006355 BED32_19805 b16d3dc377be98b4a7e9b894f16f872b 266 SUPERFAMILY SSF69572 4 264 2.88E-81 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BED32_19805 b16d3dc377be98b4a7e9b894f16f872b 266 Pfam PF00899 ThiF family 21 259 7.8E-62 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BED32_19805 b16d3dc377be98b4a7e9b894f16f872b 266 Gene3D G3DSA:3.40.50.720 13 266 9.3E-94 T 11-10-2018 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 Pfam PF13458 Periplasmic binding protein 27 361 1.1E-61 T 11-10-2018 IPR028081 Leucine-binding protein domain BED32_20160 98ceb1906939d29e5877bda7f5307045 371 SUPERFAMILY SSF53822 25 368 6.39E-89 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 68 86 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 331 346 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 278 291 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 255 273 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 27 43 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 89 99 1.3E-63 T 11-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 Gene3D G3DSA:3.40.50.2300 145 273 4.6E-117 T 11-10-2018 BED32_20160 98ceb1906939d29e5877bda7f5307045 371 Gene3D G3DSA:3.40.50.2300 28 347 4.6E-117 T 11-10-2018 BED32_02060 504e31991fcd74ca145071bf181fe550 157 Pfam PF04361 Protein of unknown function (DUF494) 1 157 9.1E-61 T 11-10-2018 IPR007456 Smg BED32_02060 504e31991fcd74ca145071bf181fe550 157 Hamap MF_00598 Protein Smg [smg]. 1 157 32.286 T 11-10-2018 IPR007456 Smg BED32_01355 d2892dd5130412a70b451a069c7dbfc8 231 Pfam PF02678 Pirin 7 119 1.3E-37 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 BED32_01355 d2892dd5130412a70b451a069c7dbfc8 231 SUPERFAMILY SSF51182 1 230 1.53E-78 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_01355 d2892dd5130412a70b451a069c7dbfc8 231 Gene3D G3DSA:2.60.120.10 7 229 1.3E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_01355 d2892dd5130412a70b451a069c7dbfc8 231 Gene3D G3DSA:2.60.120.10 11 135 1.3E-98 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_01355 d2892dd5130412a70b451a069c7dbfc8 231 PIRSF PIRSF006232 1 229 4.9E-55 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 329 483 1.7E-54 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 Pfam PF02203 Tar ligand binding domain homologue 1 170 1.3E-19 T 11-10-2018 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding GO:0006935|GO:0007165 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 2.1E-54 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 2.1E-54 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 444 473 2.1E-54 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 367 394 2.1E-54 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 396 425 2.1E-54 T 11-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 Gene3D G3DSA:1.10.287.950 216 518 1.4E-85 T 11-10-2018 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 SUPERFAMILY SSF47170 30 173 1.41E-9 T 11-10-2018 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 SMART SM00304 216 268 3.0E-4 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 SUPERFAMILY SSF58104 236 522 3.79E-70 T 11-10-2018 BED32_19060 69aa06a2034bbafff50e34286111b6a2 526 SMART SM00283 269 516 1.5E-85 T 11-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 BED32_13895 9e17ca4b71544b4a5c1474f24bd4fb4d 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 269 5.8E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_13895 9e17ca4b71544b4a5c1474f24bd4fb4d 281 SUPERFAMILY SSF161098 8 267 1.5E-52 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13895 9e17ca4b71544b4a5c1474f24bd4fb4d 281 Gene3D G3DSA:1.10.3720.10 15 269 7.5E-46 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14410 f136c312b420397e7e69411e19198ee7 242 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 16 234 5.4E-89 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 BED32_14410 f136c312b420397e7e69411e19198ee7 242 SUPERFAMILY SSF53335 17 235 7.01E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_14410 f136c312b420397e7e69411e19198ee7 242 Gene3D G3DSA:3.40.50.150 16 240 1.5E-75 T 11-10-2018 BED32_14410 f136c312b420397e7e69411e19198ee7 242 Pfam PF13489 Methyltransferase domain 57 196 4.3E-25 T 11-10-2018 BED32_14410 f136c312b420397e7e69411e19198ee7 242 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 16 240 37.474 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 BED32_06065 ba69dce8c13b843fc98aaab6a46d055c 110 Pfam PF01722 BolA-like protein 12 85 9.9E-30 T 11-10-2018 IPR002634 BolA protein BED32_06065 ba69dce8c13b843fc98aaab6a46d055c 110 PIRSF PIRSF003113 1 101 2.0E-33 T 11-10-2018 IPR002634 BolA protein BED32_06065 ba69dce8c13b843fc98aaab6a46d055c 110 Gene3D G3DSA:3.30.300.90 2 91 8.0E-36 T 11-10-2018 BED32_06065 ba69dce8c13b843fc98aaab6a46d055c 110 SUPERFAMILY SSF82657 3 90 1.44E-30 T 11-10-2018 IPR036065 BolA-like superfamily BED32_15200 20b1ac8be1efec0f7a009aae82db6b28 174 Pfam PF01292 Prokaryotic cytochrome b561 4 172 2.2E-20 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BED32_15200 20b1ac8be1efec0f7a009aae82db6b28 174 SUPERFAMILY SSF81342 3 172 2.04E-26 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 Pfam PF00005 ABC transporter 17 172 5.1E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 SMART SM00382 26 223 5.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 1.0E-111 T 11-10-2018 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524 BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 Gene3D G3DSA:3.40.50.300 1 248 6.2E-66 T 11-10-2018 BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 SUPERFAMILY SSF52540 2 231 2.96E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10815 c74a57291546f6a1de60b23461b2a16f 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 Pfam PF01313 Bacterial export proteins, family 3 9 78 1.4E-24 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 2 88 1.2E-26 T 11-10-2018 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 PIRSF PIRSF004669 2 90 9.3E-29 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 19 40 4.9E-16 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 40 55 4.9E-16 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_03810 4eb085d01642e54a9a08a373051206b7 90 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 55 77 4.9E-16 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_15730 cdd925ec7a20c25dc1d29c9718ede957 63 ProDom PD053432 MEMBRANE TRANSMEMBRANE YFGG INNER EXPORTED Y1396 PRECURSOR SIGNAL 2 50 1.0E-14 T 11-10-2018 IPR022576 Protein of unknown function DUF2633 BED32_15730 cdd925ec7a20c25dc1d29c9718ede957 63 Pfam PF11119 Protein of unknown function (DUF2633) 1 57 1.8E-31 T 11-10-2018 IPR022576 Protein of unknown function DUF2633 BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 13 218 5.4E-58 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 12 74 1.8E-13 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 Gene3D G3DSA:3.40.50.620 8 219 1.9E-65 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 9 219 31.534 T 11-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 Pfam PF01467 Cytidylyltransferase-like 13 193 1.3E-33 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 BED32_07430 c4f570b4c3127de1663c36e63b9fc292 222 SUPERFAMILY SSF52374 11 219 6.22E-59 T 11-10-2018 BED32_06165 487ac11c86e6dfe0c7090cf9fd35cd3a 176 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 48 152 5.4E-42 T 11-10-2018 IPR039366 YscW/ExsB BED32_08720 fe56fa85ad7faa24750a3a8a513fc423 258 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 43.831 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BED32_08720 fe56fa85ad7faa24750a3a8a513fc423 258 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 9.6E-114 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 BED32_08720 fe56fa85ad7faa24750a3a8a513fc423 258 Pfam PF00977 Histidine biosynthesis protein 5 239 2.3E-75 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BED32_08720 fe56fa85ad7faa24750a3a8a513fc423 258 SUPERFAMILY SSF51366 1 257 1.41E-71 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_08720 fe56fa85ad7faa24750a3a8a513fc423 258 Gene3D G3DSA:3.20.20.70 1 258 3.1E-90 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_05030 0b8b3a83c74278e266f6fe11633d6d4c 334 Pfam PF02371 Transposase IS116/IS110/IS902 family 210 286 1.3E-21 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_05030 0b8b3a83c74278e266f6fe11633d6d4c 334 Pfam PF01548 Transposase 7 147 2.9E-18 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_10645 6ca375dde3164bd2f601b4fc92723eb9 116 Gene3D G3DSA:3.30.110.10 14 116 5.9E-38 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BED32_10645 6ca375dde3164bd2f601b4fc92723eb9 116 SUPERFAMILY SSF55200 23 115 5.36E-33 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 BED32_10645 6ca375dde3164bd2f601b4fc92723eb9 116 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 24 113 3.0E-36 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 BED32_10645 6ca375dde3164bd2f601b4fc92723eb9 116 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 1 115 2.0E-46 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 Gene3D G3DSA:1.10.10.10 1 90 6.0E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 Gene3D G3DSA:3.40.190.10 91 287 1.3E-56 T 11-10-2018 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 Gene3D G3DSA:3.40.190.10 164 269 1.3E-56 T 11-10-2018 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-22 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 Pfam PF03466 LysR substrate binding domain 87 291 2.0E-37 T 11-10-2018 IPR005119 LysR, substrate-binding BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 SUPERFAMILY SSF53850 88 292 9.77E-34 T 11-10-2018 BED32_01395 4f5f21cab712be92757f9230c9bfc34a 298 SUPERFAMILY SSF46785 1 85 1.18E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_07685 d741d8ffb7b66d40ac0b283dfb0ec982 158 Pfam PF08349 Protein of unknown function (DUF1722) 38 154 7.6E-36 T 11-10-2018 IPR013560 Domain of unknown function DUF1722 BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 88 466 2.5E-88 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 PIRSF PIRSF002741 2 549 1.3E-100 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 Gene3D G3DSA:3.10.105.10 307 524 2.1E-152 T 11-10-2018 BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 Gene3D G3DSA:3.40.190.10 228 536 2.1E-152 T 11-10-2018 BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 SUPERFAMILY SSF53850 45 545 5.79E-139 T 11-10-2018 BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 93 115 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site BED32_11060 8d6a226e03f3c6a762c6d73afae771c2 557 Gene3D G3DSA:3.90.76.10 55 227 2.1E-152 T 11-10-2018 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 Pfam PF02107 Flagellar L-ring protein 45 218 5.8E-58 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 218 25.316 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 PRINTS PR01008 Flagellar L-ring protein signature 181 195 7.6E-23 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 PRINTS PR01008 Flagellar L-ring protein signature 160 176 7.6E-23 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 PRINTS PR01008 Flagellar L-ring protein signature 197 211 7.6E-23 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 PRINTS PR01008 Flagellar L-ring protein signature 66 78 7.6E-23 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_03910 d984496b4f6a9c5d01ade39879e59740 221 PRINTS PR01008 Flagellar L-ring protein signature 134 149 7.6E-23 T 11-10-2018 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 BED32_08480 f472930e9232dd4e83a74b2386278b6d 267 SUPERFAMILY SSF56770 38 169 1.83E-48 T 11-10-2018 BED32_08480 f472930e9232dd4e83a74b2386278b6d 267 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 133 149 - T 11-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08480 f472930e9232dd4e83a74b2386278b6d 267 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 50 158 5.3E-23 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08480 f472930e9232dd4e83a74b2386278b6d 267 Gene3D G3DSA:3.40.50.12280 17 187 2.9E-50 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 SUPERFAMILY SSF56024 252 393 1.13E-18 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 Pfam PF13091 PLD-like domain 257 404 2.5E-21 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 Gene3D G3DSA:3.30.870.10 24 232 4.5E-175 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 SUPERFAMILY SSF56024 10 210 1.76E-26 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 Gene3D G3DSA:3.30.870.10 18 447 4.5E-175 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 PIRSF PIRSF000850 1 451 5.0E-256 T 11-10-2018 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 SMART SM00155 352 379 0.0025 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BED32_05105 4559ce6ba2a7e97f95362bfd9053b0c8 451 SMART SM00155 133 159 0.0072 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 BED32_21240 38ffd46c1abb2ba9ebe0d67de72eb80a 195 Gene3D G3DSA:3.40.50.1000 4 182 5.2E-62 T 11-10-2018 IPR023214 HAD superfamily BED32_21240 38ffd46c1abb2ba9ebe0d67de72eb80a 195 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 55 184 1.3E-16 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_21240 38ffd46c1abb2ba9ebe0d67de72eb80a 195 Gene3D G3DSA:1.10.150.240 16 81 5.2E-62 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 BED32_21240 38ffd46c1abb2ba9ebe0d67de72eb80a 195 Pfam PF13419 Haloacid dehalogenase-like hydrolase 53 182 6.0E-8 T 11-10-2018 BED32_21240 38ffd46c1abb2ba9ebe0d67de72eb80a 195 SUPERFAMILY SSF56784 3 189 1.68E-40 T 11-10-2018 IPR036412 HAD-like superfamily BED32_03135 ba84b435a2c31fe9c7f249336de402f3 77 Gene3D G3DSA:1.10.260.40 1 72 4.6E-22 T 11-10-2018 BED32_03135 ba84b435a2c31fe9c7f249336de402f3 77 SMART SM00530 13 68 7.2E-14 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_03135 ba84b435a2c31fe9c7f249336de402f3 77 SUPERFAMILY SSF47413 4 70 3.66E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_03135 ba84b435a2c31fe9c7f249336de402f3 77 Pfam PF01381 Helix-turn-helix 16 67 2.2E-15 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_04770 6e1b34158bae529429a092df94deb164 112 SUPERFAMILY SSF51182 12 108 1.96E-26 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_04770 6e1b34158bae529429a092df94deb164 112 Pfam PF07883 Cupin domain 40 106 5.7E-21 T 11-10-2018 IPR013096 Cupin 2, conserved barrel BED32_04770 6e1b34158bae529429a092df94deb164 112 Gene3D G3DSA:2.60.120.10 1 107 1.0E-23 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_05830 0c35d2d2e0e339dc5fe1087a3ab683aa 95 Gene3D G3DSA:2.60.120.10 1 94 5.1E-33 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_05830 0c35d2d2e0e339dc5fe1087a3ab683aa 95 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 1 94 25.291 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 BED32_05830 0c35d2d2e0e339dc5fe1087a3ab683aa 95 Pfam PF06865 Protein of unknown function (DUF1255) 3 93 5.4E-33 T 11-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 BED32_05830 0c35d2d2e0e339dc5fe1087a3ab683aa 95 SUPERFAMILY SSF51182 1 94 1.2E-32 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_07590 98ec5e485d0189256090db08d9afe815 148 Gene3D G3DSA:1.10.10.10 1 83 5.6E-33 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_07590 98ec5e485d0189256090db08d9afe815 148 Pfam PF01475 Ferric uptake regulator family 11 130 1.2E-46 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BED32_07590 98ec5e485d0189256090db08d9afe815 148 Gene3D G3DSA:3.30.1490.190 85 143 1.8E-24 T 11-10-2018 BED32_07590 98ec5e485d0189256090db08d9afe815 148 SUPERFAMILY SSF46785 5 134 5.19E-44 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_01665 7c3dcc53bf757a5c76340c5ccab66a41 108 Gene3D G3DSA:2.102.10.10 1 108 1.6E-31 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BED32_01665 7c3dcc53bf757a5c76340c5ccab66a41 108 Pfam PF13806 Rieske-like [2Fe-2S] domain 3 107 4.0E-39 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 BED32_01665 7c3dcc53bf757a5c76340c5ccab66a41 108 SUPERFAMILY SSF50022 1 107 5.06E-35 T 11-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 BED32_01665 7c3dcc53bf757a5c76340c5ccab66a41 108 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 3 107 5.9E-35 T 11-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 Pfam PF03150 Di-haem cytochrome c peroxidase 177 324 9.5E-50 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 Gene3D G3DSA:1.10.760.10 174 452 1.6E-104 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 SMART SM01235 3 148 2.7E-31 T 11-10-2018 IPR025992 Haem-binding domain BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 SUPERFAMILY SSF46626 162 312 8.95E-46 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 SUPERFAMILY SSF46626 311 453 1.31E-36 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 Pfam PF14376 Haem-binding domain 26 145 1.0E-30 T 11-10-2018 IPR025992 Haem-binding domain BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 Pfam PF00034 Cytochrome c 332 448 3.4E-4 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_04765 25e6343f2a92fa7b0e05400f448f53f6 456 Gene3D G3DSA:1.10.760.10 177 324 1.6E-104 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_15360 1f79c6a5aad0f730e592ca1633773765 169 Gene3D G3DSA:2.70.70.10 9 169 8.9E-64 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_15360 1f79c6a5aad0f730e592ca1633773765 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_15360 1f79c6a5aad0f730e592ca1633773765 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 2.8E-49 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_15360 1f79c6a5aad0f730e592ca1633773765 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 2.9E-50 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 BED32_15360 1f79c6a5aad0f730e592ca1633773765 169 SUPERFAMILY SSF51261 12 167 3.84E-56 T 11-10-2018 IPR011055 Duplicated hybrid motif BED32_01210 2987feddb24a2420c328eea4d3cdf3ad 85 SUPERFAMILY SSF53098 3 67 3.03E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_01210 2987feddb24a2420c328eea4d3cdf3ad 85 Pfam PF13610 DDE domain 1 76 3.8E-25 T 11-10-2018 IPR032874 DDE domain BED32_00105 12c02f20d2215124e9d0b44ef41ad983 237 Pfam PF01526 Tn3 transposase DDE domain 1 217 1.0E-79 T 11-10-2018 IPR002513 Tn3 transposase DDE domain GO:0004803|GO:0006313 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 SUPERFAMILY SSF46548 7 157 8.37E-42 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 472 1.1E-261 T 11-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 Gene3D G3DSA:1.10.1060.10 13 146 4.7E-35 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 PRINTS PR00419 Adrenodoxin reductase family signature 324 337 1.5E-37 T 11-10-2018 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 1.5E-37 T 11-10-2018 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 1.5E-37 T 11-10-2018 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 1.5E-37 T 11-10-2018 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 PRINTS PR00419 Adrenodoxin reductase family signature 290 304 1.5E-37 T 11-10-2018 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 Gene3D G3DSA:3.50.50.60 147 210 2.0E-10 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 Gene3D G3DSA:3.50.50.60 248 400 1.2E-43 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 459 1.8E-24 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 3.2E-38 T 11-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 BED32_03045 5c2bfc845426d5dea3f6c18214c075d1 472 SUPERFAMILY SSF51971 145 401 8.83E-70 T 11-10-2018 BED32_06410 dd71dfbb0f270199dbe70fa86e450042 149 SUPERFAMILY SSF141322 89 147 1.02E-6 T 11-10-2018 BED32_06410 dd71dfbb0f270199dbe70fa86e450042 149 Gene3D G3DSA:2.40.50.140 83 149 1.6E-10 T 11-10-2018 BED32_06410 dd71dfbb0f270199dbe70fa86e450042 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 13 146 8.0E-24 T 11-10-2018 IPR002810 NfeD-like, C-terminal domain BED32_10585 0be3fb6099e0166669ff4861b3c5f989 294 SUPERFAMILY SSF81345 5 261 7.45E-39 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_10585 0be3fb6099e0166669ff4861b3c5f989 294 Pfam PF00950 ABC 3 transport family 10 265 8.3E-90 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 BED32_10585 0be3fb6099e0166669ff4861b3c5f989 294 Gene3D G3DSA:1.10.3470.10 39 269 1.5E-8 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_03080 8ae0bc6f98fea80e0452c40fc5f7fb05 195 Pfam PF13580 SIS domain 8 143 6.6E-33 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_03080 8ae0bc6f98fea80e0452c40fc5f7fb05 195 SUPERFAMILY SSF53697 2 190 6.27E-51 T 11-10-2018 BED32_03080 8ae0bc6f98fea80e0452c40fc5f7fb05 195 Gene3D G3DSA:3.40.50.10490 1 195 4.2E-70 T 11-10-2018 BED32_03080 8ae0bc6f98fea80e0452c40fc5f7fb05 195 Hamap MF_01157 DnaA initiator-associating protein DiaA [diaA]. 1 195 60.416 T 11-10-2018 IPR023070 DnaA initiator-associating protein BED32_01085 89ed46cae5d58f2aaf953b14fee8b9b8 314 Pfam PF00294 pfkB family carbohydrate kinase 4 308 2.6E-68 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_01085 89ed46cae5d58f2aaf953b14fee8b9b8 314 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 262 275 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 BED32_01085 89ed46cae5d58f2aaf953b14fee8b9b8 314 SUPERFAMILY SSF53613 1 308 5.77E-73 T 11-10-2018 IPR029056 Ribokinase-like BED32_01085 89ed46cae5d58f2aaf953b14fee8b9b8 314 Gene3D G3DSA:3.40.1190.20 1 312 1.0E-87 T 11-10-2018 IPR029056 Ribokinase-like BED32_00755 c23b3ed95064b4808b5ac180796b26dc 318 Gene3D G3DSA:3.40.50.2300 128 269 4.1E-109 T 11-10-2018 BED32_00755 c23b3ed95064b4808b5ac180796b26dc 318 Gene3D G3DSA:3.40.50.2300 27 287 4.1E-109 T 11-10-2018 BED32_00755 c23b3ed95064b4808b5ac180796b26dc 318 Pfam PF13407 Periplasmic binding protein domain 28 275 2.4E-44 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_00755 c23b3ed95064b4808b5ac180796b26dc 318 SUPERFAMILY SSF53822 23 310 3.37E-72 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 PRINTS PR00446 Hydrogen uptake protein signature 9 21 5.6E-12 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 PRINTS PR00446 Hydrogen uptake protein signature 21 32 5.6E-12 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 PRINTS PR00446 Hydrogen uptake protein signature 62 72 5.6E-12 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 PRINTS PR00446 Hydrogen uptake protein signature 73 89 5.6E-12 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 PRINTS PR00446 Hydrogen uptake protein signature 39 56 5.6E-12 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 Pfam PF01750 Hydrogenase maturation protease 28 144 6.5E-26 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 TIGRFAM TIGR00142 hycI: hydrogenase maturation peptidase HycI 10 152 9.0E-54 T 11-10-2018 IPR004420 Peptidase A31, hydrogenase maturation protease HycI GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 Gene3D G3DSA:3.40.50.1450 5 157 1.3E-57 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 10 145 2.8E-36 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 BED32_08470 16420ff58c6142028f41d6ccdd4eb1ff 157 SUPERFAMILY SSF53163 10 155 3.66E-35 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily BED32_17570 5b1c9794380013c3aca599f8f629d379 233 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 227 1.1E-115 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_17570 5b1c9794380013c3aca599f8f629d379 233 Pfam PF01048 Phosphorylase superfamily 2 226 2.7E-48 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 BED32_17570 5b1c9794380013c3aca599f8f629d379 233 SUPERFAMILY SSF53167 1 227 1.96E-74 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 BED32_17570 5b1c9794380013c3aca599f8f629d379 233 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 229 46.97 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 BED32_17570 5b1c9794380013c3aca599f8f629d379 233 Gene3D G3DSA:3.40.50.1580 1 232 1.0E-68 T 11-10-2018 BED32_21745 fa7a12c5bc578ab1bff4b8bc3cbd5672 110 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 100 6.3E-25 T 11-10-2018 IPR009241 Toxin HigB-like BED32_16580 103934395d36a2962ef2ab1736ed079d 113 Hamap MF_00546 Acid shock protein [asr]. 1 113 14.176 T 11-10-2018 IPR023497 Acid shock protein BED32_16580 103934395d36a2962ef2ab1736ed079d 113 Pfam PF06392 Acid shock protein repeat 53 73 4.0E-5 T 11-10-2018 IPR009435 Acid shock GO:0010447|GO:0042597 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Gene3D G3DSA:1.10.287.470 100 173 9.7E-113 T 11-10-2018 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Pfam PF00529 HlyD membrane-fusion protein of T1SS 42 361 7.3E-13 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Gene3D G3DSA:2.40.50.100 65 209 9.7E-113 T 11-10-2018 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 SUPERFAMILY SSF111369 53 301 3.14E-88 T 11-10-2018 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 294 1.4E-10 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Gene3D G3DSA:2.40.30.170 53 304 9.7E-113 T 11-10-2018 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 Gene3D G3DSA:2.40.420.20 305 374 9.7E-113 T 11-10-2018 BED32_06250 cb257a2cf726220ec0c5d03bdba22cea 395 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 377 2.6E-78 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 BED32_14735 11ca812c36d96a73969713e11dbd3d7e 190 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 2 188 36.702 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like BED32_14735 11ca812c36d96a73969713e11dbd3d7e 190 Pfam PF02441 Flavoprotein 2 165 6.7E-25 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 BED32_14735 11ca812c36d96a73969713e11dbd3d7e 190 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 3 186 3.0E-70 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like BED32_14735 11ca812c36d96a73969713e11dbd3d7e 190 Gene3D G3DSA:3.40.50.1950 2 190 4.4E-77 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BED32_14735 11ca812c36d96a73969713e11dbd3d7e 190 SUPERFAMILY SSF52507 2 187 2.09E-58 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 BED32_12775 a363fc1e4303d493767147f390646e29 81 Pfam PF13269 Protein of unknown function (DUF4060) 3 75 8.5E-39 T 11-10-2018 IPR025135 Protein of unknown function DUF4060 BED32_18820 c512e25a5467ea8d35ce9a26c2c8dc7b 437 Pfam PF01547 Bacterial extracellular solute-binding protein 47 340 3.0E-35 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein BED32_18820 c512e25a5467ea8d35ce9a26c2c8dc7b 437 SUPERFAMILY SSF53850 32 429 8.25E-79 T 11-10-2018 BED32_18820 c512e25a5467ea8d35ce9a26c2c8dc7b 437 Gene3D G3DSA:3.40.190.10 31 434 2.0E-75 T 11-10-2018 BED32_02450 d53c7afa916a683540a41bd22529f6db 344 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 16 344 55.618 T 11-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 BED32_02450 d53c7afa916a683540a41bd22529f6db 344 Gene3D G3DSA:3.90.420.10 74 344 8.2E-122 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BED32_02450 d53c7afa916a683540a41bd22529f6db 344 Pfam PF00174 Oxidoreductase molybdopterin binding domain 118 277 5.0E-28 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 BED32_02450 d53c7afa916a683540a41bd22529f6db 344 SUPERFAMILY SSF56524 78 340 2.09E-93 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 BED32_03580 e4d9d4a272519985d80c092f90576224 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 207 221 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_03580 e4d9d4a272519985d80c092f90576224 403 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 13 399 2.8E-169 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 BED32_03580 e4d9d4a272519985d80c092f90576224 403 Gene3D G3DSA:3.40.640.10 7 263 2.3E-69 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 BED32_03580 e4d9d4a272519985d80c092f90576224 403 PIRSF PIRSF001434 1 400 4.9E-116 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_03580 e4d9d4a272519985d80c092f90576224 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 13 397 2.1E-113 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 BED32_03580 e4d9d4a272519985d80c092f90576224 403 Gene3D G3DSA:3.90.1150.10 264 400 2.6E-41 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 BED32_03580 e4d9d4a272519985d80c092f90576224 403 SUPERFAMILY SSF53383 28 398 2.29E-87 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase BED32_04435 ac0eaaa51bc384655eac46705f9f7e5d 250 Pfam PF01435 Peptidase family M48 77 245 3.0E-25 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 BED32_04435 ac0eaaa51bc384655eac46705f9f7e5d 250 Gene3D G3DSA:3.30.2010.10 60 149 1.5E-8 T 11-10-2018 BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 PIRSF PIRSF015753 5 324 2.3E-132 T 11-10-2018 IPR016639 Glutathione S-transferase Omega/GSH GO:0004364 BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 SUPERFAMILY SSF52833 42 163 1.92E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 Pfam PF13409 Glutathione S-transferase, N-terminal domain 62 158 1.0E-23 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 Gene3D G3DSA:1.20.1050.10 179 328 2.4E-67 T 11-10-2018 BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 SUPERFAMILY SSF47616 176 324 2.92E-35 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 Pfam PF13410 Glutathione S-transferase, C-terminal domain 203 257 5.3E-12 T 11-10-2018 BED32_03190 3f89d4ab8ae796d32e4d9a9069fc7d8c 328 Gene3D G3DSA:3.40.30.130 1 171 8.1E-77 T 11-10-2018 BED32_19045 d3f6da3068762f7d945501fc8b86edd2 87 Gene3D G3DSA:3.30.1660.10 21 87 1.8E-24 T 11-10-2018 IPR025543 Dodecin-like BED32_19045 d3f6da3068762f7d945501fc8b86edd2 87 Pfam PF07338 Protein of unknown function (DUF1471) 34 87 6.4E-25 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_19045 d3f6da3068762f7d945501fc8b86edd2 87 SUPERFAMILY SSF159871 3 87 1.57E-28 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_21565 04d44b56b0508a951166ef7858e20d7e 220 SUPERFAMILY SSF161098 10 202 9.29E-44 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21565 04d44b56b0508a951166ef7858e20d7e 220 Gene3D G3DSA:1.10.3720.10 5 219 1.8E-47 T 11-10-2018 IPR035906 MetI-like superfamily BED32_21565 04d44b56b0508a951166ef7858e20d7e 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 217 2.7E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_10260 9e4eeb9e8dd76e4e9df26a2d12684681 109 Hamap MF_01597 Spermidine export protein MdtI [mdtI]. 1 109 30.2 T 11-10-2018 IPR023737 Spermidine export protein MdtI GO:0005886|GO:0015606|GO:0015848 BED32_10260 9e4eeb9e8dd76e4e9df26a2d12684681 109 Gene3D G3DSA:1.10.3730.20 7 109 8.0E-28 T 11-10-2018 BED32_10260 9e4eeb9e8dd76e4e9df26a2d12684681 109 Pfam PF00893 Small Multidrug Resistance protein 10 99 8.2E-27 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 BED32_10260 9e4eeb9e8dd76e4e9df26a2d12684681 109 SUPERFAMILY SSF103481 11 108 1.15E-17 T 11-10-2018 BED32_16910 735309212116dc3b1d126f53251e666c 129 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 126 32.261 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 BED32_16910 735309212116dc3b1d126f53251e666c 129 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 125 6.0E-66 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 BED32_16910 735309212116dc3b1d126f53251e666c 129 Pfam PF11944 Protein of unknown function (DUF3461) 1 125 8.8E-55 T 11-10-2018 IPR020911 Uncharacterised protein family UPF0325 BED32_14850 d45ff7d7cdcf8fdbb55fef20a7cdabbe 443 PIRSF PIRSF006351 5 434 2.1E-134 T 11-10-2018 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 BED32_14850 d45ff7d7cdcf8fdbb55fef20a7cdabbe 443 Pfam PF02378 Phosphotransferase system, EIIC 33 352 3.4E-49 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 BED32_14850 d45ff7d7cdcf8fdbb55fef20a7cdabbe 443 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 16 426 1.2E-110 T 11-10-2018 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 BED32_17975 3724bc72779232457eea99f63bece268 206 Pfam PF00694 Aconitase C-terminal domain 9 131 1.9E-39 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 BED32_17975 3724bc72779232457eea99f63bece268 206 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 7 205 44.732 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BED32_17975 3724bc72779232457eea99f63bece268 206 SUPERFAMILY SSF52016 4 203 2.94E-61 T 11-10-2018 BED32_17975 3724bc72779232457eea99f63bece268 206 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 9 194 6.8E-97 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 BED32_17975 3724bc72779232457eea99f63bece268 206 Gene3D G3DSA:3.20.19.10 5 186 2.7E-77 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 BED32_16270 916ce3e1e3d3bb3695ffe8a94300a402 318 Pfam PF17188 MucB/RseB C-terminal domain 219 312 3.1E-29 T 11-10-2018 IPR033436 MucB/RseB, C-terminal BED32_16270 916ce3e1e3d3bb3695ffe8a94300a402 318 Gene3D G3DSA:2.50.20.10 27 209 3.5E-53 T 11-10-2018 BED32_16270 916ce3e1e3d3bb3695ffe8a94300a402 318 Pfam PF03888 MucB/RseB N-terminal domain 28 196 4.7E-61 T 11-10-2018 IPR033434 MucB/RseB, N-terminal BED32_16270 916ce3e1e3d3bb3695ffe8a94300a402 318 Gene3D G3DSA:3.30.200.100 218 318 3.6E-30 T 11-10-2018 IPR038484 MucB/RseB, C-terminal domain superfamily BED32_16270 916ce3e1e3d3bb3695ffe8a94300a402 318 PIRSF PIRSF005427 1 318 7.7E-89 T 11-10-2018 IPR005588 MucB/RseB BED32_12790 9ceea59fe80a27bdb3e52778b45cf1d4 77 Pfam PF13996 YobH-like protein 3 70 1.3E-35 T 11-10-2018 IPR025611 YobH-like protein BED32_18695 eda10103f1aa175f5f012e88242bd9a8 292 Gene3D G3DSA:3.40.50.300 3 283 4.7E-69 T 11-10-2018 BED32_18695 eda10103f1aa175f5f012e88242bd9a8 292 SUPERFAMILY SSF52540 10 245 2.66E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_18695 eda10103f1aa175f5f012e88242bd9a8 292 Pfam PF00005 ABC transporter 22 191 6.2E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_18695 eda10103f1aa175f5f012e88242bd9a8 292 SMART SM00382 29 241 6.2E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_06275 4620cfab078ad3532851785b8eb41049 178 Gene3D G3DSA:1.20.1270.340 1 98 2.6E-33 T 11-10-2018 IPR038338 PriB/PriC superfamily BED32_06275 4620cfab078ad3532851785b8eb41049 178 Pfam PF07445 Primosomal replication protein priC 9 175 3.9E-53 T 11-10-2018 IPR010890 Primosomal replication PriB/PriC BED32_21055 4ad40b9bad42eea5b64c598b4ec46763 264 Pfam PF08346 AntA/AntB antirepressor 43 117 1.6E-24 T 11-10-2018 IPR013557 AntA/AntB antirepressor BED32_01140 594a561ed0649728f0427f929d8ba805 339 PRINTS PR00313 NodO calcium binding signature 231 240 5.5E-6 T 11-10-2018 BED32_01140 594a561ed0649728f0427f929d8ba805 339 PRINTS PR00313 NodO calcium binding signature 204 212 5.5E-6 T 11-10-2018 BED32_01140 594a561ed0649728f0427f929d8ba805 339 PRINTS PR00313 NodO calcium binding signature 222 230 5.5E-6 T 11-10-2018 BED32_01140 594a561ed0649728f0427f929d8ba805 339 PRINTS PR00313 NodO calcium binding signature 133 144 5.5E-6 T 11-10-2018 BED32_01140 594a561ed0649728f0427f929d8ba805 339 SUPERFAMILY SSF55486 1 130 4.67E-27 T 11-10-2018 BED32_01140 594a561ed0649728f0427f929d8ba805 339 Pfam PF08548 Peptidase M10 serralysin C terminal 128 332 2.7E-59 T 11-10-2018 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 BED32_01140 594a561ed0649728f0427f929d8ba805 339 Gene3D G3DSA:3.40.390.10 1 134 1.7E-99 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 BED32_01140 594a561ed0649728f0427f929d8ba805 339 Gene3D G3DSA:2.150.10.10 135 322 1.7E-99 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BED32_01140 594a561ed0649728f0427f929d8ba805 339 SUPERFAMILY SSF51120 134 330 9.16E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal BED32_10715 529ffac068c82f01f8f9fe751b4a2160 300 SUPERFAMILY SSF88713 14 245 8.58E-26 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 BED32_10715 529ffac068c82f01f8f9fe751b4a2160 300 Pfam PF01522 Polysaccharide deacetylase 15 162 1.1E-11 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 BED32_10715 529ffac068c82f01f8f9fe751b4a2160 300 Hamap MF_01870 Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD [arnD]. 1 296 64.347 T 11-10-2018 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable GO:0016811 BED32_12985 934334e285ebc064a92708c8ae785acc 148 Pfam PF00293 NUDIX domain 4 115 6.6E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_12985 934334e285ebc064a92708c8ae785acc 148 PRINTS PR00502 NUDIX hydrolase family signature 45 60 2.7E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_12985 934334e285ebc064a92708c8ae785acc 148 PRINTS PR00502 NUDIX hydrolase family signature 31 45 2.7E-5 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 BED32_12985 934334e285ebc064a92708c8ae785acc 148 Gene3D G3DSA:3.90.79.10 1 148 8.1E-45 T 11-10-2018 BED32_12985 934334e285ebc064a92708c8ae785acc 148 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_12985 934334e285ebc064a92708c8ae785acc 148 SUPERFAMILY SSF55811 2 131 1.76E-30 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 157 168 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 87 102 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 8 25 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 179 192 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 143 153 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 PRINTS PR00988 Uridine kinase signature 42 53 4.3E-38 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 199 6.7E-42 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 Hamap MF_00551 Uridine kinase [udk]. 5 213 40.94 T 11-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 TIGRFAM TIGR00235 udk: uridine kinase 6 213 5.7E-95 T 11-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 Gene3D G3DSA:3.40.50.300 4 213 1.1E-60 T 11-10-2018 BED32_08595 7158cc365e9da19d9e2373d624a297f3 213 SUPERFAMILY SSF52540 8 205 4.98E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 Gene3D G3DSA:3.30.1200.10 2 90 1.3E-35 T 11-10-2018 IPR036591 YggU-like superfamily BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 SUPERFAMILY SSF69786 3 89 1.12E-31 T 11-10-2018 IPR036591 YggU-like superfamily BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 SMART SM01152 1 77 4.1E-37 T 11-10-2018 IPR003746 Protein of unknown function DUF167 BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 5 75 4.5E-26 T 11-10-2018 IPR003746 Protein of unknown function DUF167 BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 3 85 3.4E-30 T 11-10-2018 IPR005228 Conserved hypothetical protein CHP00251 BED32_04335 012a58c83c6aa0b65c6c275af07c6676 90 Hamap MF_00634 UPF0235 protein YggU [yggU]. 1 87 20.22 T 11-10-2018 IPR003746 Protein of unknown function DUF167 BED32_16165 ebd04d7d4deba5179470213191565ecb 350 ProDom PD117379 LIPOPROTEIN YFHG HELIX ALPHA REGULATOR MEMBRANE TRANSCRIPTIONAL FAMILIIY EBP TWO-COMPONENT 26 239 1.0E-100 T 11-10-2018 BED32_16165 ebd04d7d4deba5179470213191565ecb 350 Pfam PF13942 YfhG lipoprotein 68 241 5.9E-78 T 11-10-2018 IPR025262 Quorum-sensing regulator protein G BED32_12440 e187ab5886b6e2b2a7428ff1de3cb283 385 Pfam PF12704 MacB-like periplasmic core domain 37 201 8.5E-11 T 11-10-2018 IPR025857 MacB-like periplasmic core domain BED32_12440 e187ab5886b6e2b2a7428ff1de3cb283 385 Pfam PF02687 FtsX-like permease family 290 378 8.4E-11 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_02985 9734830ccfed4e6d46c2ffbb8c283585 84 Pfam PF01722 BolA-like protein 20 74 1.6E-14 T 11-10-2018 IPR002634 BolA protein BED32_02985 9734830ccfed4e6d46c2ffbb8c283585 84 PIRSF PIRSF003113 1 83 2.1E-21 T 11-10-2018 IPR002634 BolA protein BED32_02985 9734830ccfed4e6d46c2ffbb8c283585 84 SUPERFAMILY SSF82657 2 82 6.02E-29 T 11-10-2018 IPR036065 BolA-like superfamily BED32_02985 9734830ccfed4e6d46c2ffbb8c283585 84 Gene3D G3DSA:3.30.300.90 1 84 4.7E-36 T 11-10-2018 BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Pfam PF16861 Carbamoyltransferase C-terminus 392 561 1.4E-69 T 11-10-2018 IPR031730 Carbamoyltransferase, C-terminal BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Pfam PF02543 Carbamoyltransferase N-terminus 93 337 1.7E-23 T 11-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Pfam PF02543 Carbamoyltransferase N-terminus 7 72 1.7E-11 T 11-10-2018 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Gene3D G3DSA:3.90.870.20 355 560 1.6E-80 T 11-10-2018 IPR038152 Carbamoyltransferase, C-terminal domain superfamily BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Gene3D G3DSA:3.30.420.350 98 332 1.3E-56 T 11-10-2018 BED32_18495 d746ac25b0969473f3c41b24f69767af 566 SUPERFAMILY SSF53067 22 345 5.57E-7 T 11-10-2018 BED32_18495 d746ac25b0969473f3c41b24f69767af 566 Gene3D G3DSA:3.30.420.40 14 339 1.3E-56 T 11-10-2018 BED32_00050 2456fba8536618cea4a8c9d0b55be9da 130 Gene3D G3DSA:3.30.1460.10 1 130 3.6E-61 T 11-10-2018 BED32_00050 2456fba8536618cea4a8c9d0b55be9da 130 Pfam PF05932 Tir chaperone protein (CesT) family 8 110 9.1E-9 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BED32_00050 2456fba8536618cea4a8c9d0b55be9da 130 SUPERFAMILY SSF69635 4 126 8.16E-40 T 11-10-2018 BED32_02825 7762699363a6b70a4fc83528dce825a1 246 SUPERFAMILY SSF51569 85 211 6.59E-5 T 11-10-2018 BED32_02825 7762699363a6b70a4fc83528dce825a1 246 Pfam PF07071 KDGP aldolase 8 224 1.2E-111 T 11-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_02825 7762699363a6b70a4fc83528dce825a1 246 Gene3D G3DSA:3.20.20.70 1 246 1.9E-120 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_02825 7762699363a6b70a4fc83528dce825a1 246 TIGRFAM TIGR03581 EF_0839: conserved hypothetical protein EF_0839/AHA_3917 8 243 1.9E-124 T 11-10-2018 IPR010763 2-dehydro-3-deoxy-phosphogluconate aldolase KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 SUPERFAMILY SSF52540 6 247 2.02E-78 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 SUPERFAMILY SSF50331 243 373 1.41E-21 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 Gene3D G3DSA:3.40.50.300 4 227 7.2E-60 T 11-10-2018 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 SMART SM00382 29 217 2.0E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 Pfam PF00005 ABC transporter 21 162 7.8E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 Gene3D G3DSA:2.40.50.940 228 366 7.8E-25 T 11-10-2018 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 Pfam PF08402 TOBE domain 289 365 1.2E-4 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 BED32_10500 fb6c28221e23177b47c9b124124d77b6 375 Gene3D G3DSA:2.40.50.140 295 357 7.8E-25 T 11-10-2018 BED32_04580 105e3fabeb3a5b0fc59eaa2bd701b97c 344 SUPERFAMILY SSF53187 22 280 1.14E-34 T 11-10-2018 BED32_04580 105e3fabeb3a5b0fc59eaa2bd701b97c 344 Pfam PF04389 Peptidase family M28 110 323 1.6E-26 T 11-10-2018 IPR007484 Peptidase M28 BED32_04580 105e3fabeb3a5b0fc59eaa2bd701b97c 344 Gene3D G3DSA:3.40.630.10 24 344 4.7E-43 T 11-10-2018 BED32_01765 f2faa6a9adde498c37fe9bf9f3bca474 296 Gene3D G3DSA:1.10.3720.10 91 289 3.4E-29 T 11-10-2018 IPR035906 MetI-like superfamily BED32_01765 f2faa6a9adde498c37fe9bf9f3bca474 296 SUPERFAMILY SSF161098 96 278 1.15E-35 T 11-10-2018 IPR035906 MetI-like superfamily BED32_01765 f2faa6a9adde498c37fe9bf9f3bca474 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 290 2.7E-25 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_00445 258449283c28b9e09c91c83f3d23c778 146 Pfam PF09621 Type III secretion system regulator (LcrR) 4 142 1.6E-70 T 11-10-2018 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 BED32_00445 258449283c28b9e09c91c83f3d23c778 146 TIGRFAM TIGR02572 LcrR: type III secretion system regulator LcrR 2 142 6.8E-72 T 11-10-2018 IPR013405 Type III secretion system regulator, LcrR BED32_15240 02775bfc496c7be4842a11bde4bd8180 158 Pfam PF05232 Chlorhexidine efflux transporter 6 68 1.6E-23 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter BED32_15240 02775bfc496c7be4842a11bde4bd8180 158 Pfam PF05232 Chlorhexidine efflux transporter 74 137 6.7E-22 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter BED32_08885 49b5478b5e9a4f54d33d7a1063c337fc 165 Pfam PF15953 Putative propanediol utilisation 9 160 2.9E-41 T 11-10-2018 IPR030992 Microcompartment protein PduM GO:0005198 BED32_08885 49b5478b5e9a4f54d33d7a1063c337fc 165 TIGRFAM TIGR04493 microcomp_PduM: microcompartment protein PduM 9 161 1.2E-54 T 11-10-2018 IPR030992 Microcompartment protein PduM GO:0005198 BED32_07310 d8d7197f69aec3023da9a61ca4364670 56 Gene3D G3DSA:3.40.190.290 3 50 1.1E-5 T 11-10-2018 BED32_04110 a470aee0f54bf6ade6a9137061c87a04 175 Pfam PF00857 Isochorismatase family 6 140 1.2E-27 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 BED32_04110 a470aee0f54bf6ade6a9137061c87a04 175 SUPERFAMILY SSF52499 4 155 6.28E-37 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_04110 a470aee0f54bf6ade6a9137061c87a04 175 Gene3D G3DSA:3.40.50.850 2 155 2.0E-35 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_12940 1949cd6154e21c764b8c9e2f9fc8530c 266 Gene3D G3DSA:3.90.550.10 13 193 1.1E-13 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_12940 1949cd6154e21c764b8c9e2f9fc8530c 266 SUPERFAMILY SSF53448 27 189 3.46E-17 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_12940 1949cd6154e21c764b8c9e2f9fc8530c 266 Pfam PF00535 Glycosyl transferase family 2 16 144 1.3E-10 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_17420 6d992e37f5833457c7b0094128c3e021 172 Gene3D G3DSA:3.40.50.360 1 171 4.9E-48 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_17420 6d992e37f5833457c7b0094128c3e021 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 BED32_17420 6d992e37f5833457c7b0094128c3e021 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 168 3.0E-72 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 BED32_17420 6d992e37f5833457c7b0094128c3e021 172 SUPERFAMILY SSF52218 1 168 2.64E-46 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_17420 6d992e37f5833457c7b0094128c3e021 172 Pfam PF00258 Flavodoxin 5 160 4.5E-27 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 BED32_17420 6d992e37f5833457c7b0094128c3e021 172 PIRSF PIRSF038996 1 170 1.4E-54 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 BED32_06355 38a7fd891911c1e0a90173522fe487a3 338 Pfam PF00534 Glycosyl transferases group 1 179 311 1.9E-22 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_06355 38a7fd891911c1e0a90173522fe487a3 338 SUPERFAMILY SSF53756 3 335 4.19E-53 T 11-10-2018 BED32_06355 38a7fd891911c1e0a90173522fe487a3 338 Gene3D G3DSA:3.40.50.2000 2 173 1.5E-11 T 11-10-2018 BED32_06355 38a7fd891911c1e0a90173522fe487a3 338 Gene3D G3DSA:3.40.50.2000 174 323 4.6E-28 T 11-10-2018 BED32_06355 38a7fd891911c1e0a90173522fe487a3 338 Pfam PF13439 Glycosyltransferase Family 4 13 167 4.8E-9 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BED32_20680 6df0e309a995441842f1b9ebce502885 284 Pfam PF02634 FdhD/NarQ family 47 282 7.6E-71 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BED32_20680 6df0e309a995441842f1b9ebce502885 284 Gene3D G3DSA:3.40.140.10 136 284 6.7E-44 T 11-10-2018 BED32_20680 6df0e309a995441842f1b9ebce502885 284 Gene3D G3DSA:3.10.20.10 49 134 7.5E-11 T 11-10-2018 BED32_20680 6df0e309a995441842f1b9ebce502885 284 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 22 283 32.607 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BED32_20680 6df0e309a995441842f1b9ebce502885 284 PIRSF PIRSF015626 15 284 2.1E-77 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BED32_20680 6df0e309a995441842f1b9ebce502885 284 SUPERFAMILY SSF53927 33 282 3.61E-79 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 BED32_20680 6df0e309a995441842f1b9ebce502885 284 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 44 284 2.7E-88 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.701 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 Gene3D G3DSA:1.10.3880.10 1 90 2.6E-37 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 SUPERFAMILY SSF111148 1 89 1.18E-39 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 PIRSF PIRSF029827 1 90 1.8E-43 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 9.3E-40 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BED32_04295 4a4e239ffbe06589eefe7c45040bbbda 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 3.0E-38 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 Gene3D G3DSA:3.60.110.10 8 266 5.0E-81 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 SUPERFAMILY SSF56317 293 543 9.16E-47 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 Gene3D G3DSA:3.60.110.10 289 576 1.0E-50 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 SUPERFAMILY SSF56317 6 267 4.06E-76 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 Pfam PF00795 Carbon-nitrogen hydrolase 7 248 2.1E-51 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_04815 1eb710ee1c37c9a750453592b64ae1f8 577 Pfam PF00795 Carbon-nitrogen hydrolase 295 544 8.9E-31 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 Gene3D G3DSA:1.10.10.10 154 222 1.2E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 SMART SM00421 160 217 1.7E-6 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 Pfam PF08448 PAS fold 30 133 5.8E-6 T 11-10-2018 IPR013656 PAS fold-4 BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 Gene3D G3DSA:3.30.450.20 20 136 2.2E-5 T 11-10-2018 BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 SUPERFAMILY SSF46894 145 222 1.05E-14 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_11415 2a644da38fd3489bde6c76d5a6e46f0c 239 Pfam PF00196 Bacterial regulatory proteins, luxR family 163 216 3.4E-10 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 SMART SM00945 5 119 5.0E-61 T 11-10-2018 IPR016103 ProQ/FinO domain BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 Pfam PF04352 ProQ/FINO family 8 115 8.0E-43 T 11-10-2018 IPR016103 ProQ/FinO domain BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 SUPERFAMILY SSF48657 5 119 2.09E-39 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 Gene3D G3DSA:1.10.1710.10 1 131 9.3E-25 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 Pfam PF17516 ProQ C-terminal domain 192 242 8.2E-25 T 11-10-2018 IPR035236 RNA chaperone ProQ, C-terminal BED32_10435 146d612d260e75dc71cd5a3fc5577272 242 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 242 30.937 T 11-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 BED32_14690 6f917543e154070528d0dd9820f649ec 182 Pfam PF00293 NUDIX domain 37 151 4.3E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_14690 6f917543e154070528d0dd9820f649ec 182 PIRSF PIRSF017340 2 171 1.0E-68 T 11-10-2018 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 BED32_14690 6f917543e154070528d0dd9820f649ec 182 SUPERFAMILY SSF55811 11 167 2.98E-33 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_14690 6f917543e154070528d0dd9820f649ec 182 Gene3D G3DSA:3.90.79.10 2 178 6.2E-55 T 11-10-2018 BED32_09370 85469efd579c483048ac750abb5d265b 267 Gene3D G3DSA:3.40.390.10 140 263 2.5E-41 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 BED32_09370 85469efd579c483048ac750abb5d265b 267 Gene3D G3DSA:1.10.472.150 16 139 4.6E-41 T 11-10-2018 BED32_09370 85469efd579c483048ac750abb5d265b 267 SUPERFAMILY SSF55486 33 245 2.49E-41 T 11-10-2018 BED32_09370 85469efd579c483048ac750abb5d265b 267 Pfam PF06167 Glucose-regulated metallo-peptidase M90 11 243 9.7E-64 T 11-10-2018 IPR010384 MtfA family BED32_09370 85469efd579c483048ac750abb5d265b 267 Hamap MF_01593 Protein MtfA [mtfA]. 1 265 65.191 T 11-10-2018 IPR010384 MtfA family BED32_19625 429c4a36229e3ef435436ae1e34a2607 170 SUPERFAMILY SSF48452 50 155 1.17E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_19625 429c4a36229e3ef435436ae1e34a2607 170 Gene3D G3DSA:1.25.40.10 32 170 1.4E-28 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_19625 429c4a36229e3ef435436ae1e34a2607 170 TIGRFAM TIGR02552 LcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD 43 168 4.4E-31 T 11-10-2018 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD BED32_01365 8c05d14cb87cc534ac79eb4e44b526a7 438 Pfam PF02447 GntP family permease 1 437 8.8E-186 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BED32_01365 8c05d14cb87cc534ac79eb4e44b526a7 438 PIRSF PIRSF002746 1 438 4.2E-162 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BED32_01365 8c05d14cb87cc534ac79eb4e44b526a7 438 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 1 438 1.8E-199 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 BED32_03485 da15106db4058a3398c6bccd9d36e42b 229 Pfam PF06693 Protein of unknown function (DUF1190) 41 213 4.2E-54 T 11-10-2018 IPR009576 Biofilm formation YgiB BED32_03485 da15106db4058a3398c6bccd9d36e42b 229 Hamap MF_01188 UPF0441 protein YgiB [ygiB]. 1 229 46.189 T 11-10-2018 IPR009576 Biofilm formation YgiB BED32_03660 76bc73664abddc82fa1e85920c869d02 200 SUPERFAMILY SSF46894 20 99 3.12E-7 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_03660 76bc73664abddc82fa1e85920c869d02 200 Pfam PF00486 Transcriptional regulatory protein, C terminal 30 99 6.0E-5 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_03660 76bc73664abddc82fa1e85920c869d02 200 Gene3D G3DSA:1.10.10.10 3 108 1.5E-7 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_08695 1fa94aa193138774a2d0f2959a99d9a8 524 SUPERFAMILY SSF53756 205 428 3.61E-10 T 11-10-2018 BED32_08695 1fa94aa193138774a2d0f2959a99d9a8 524 Gene3D G3DSA:3.40.50.2000 243 423 1.2E-11 T 11-10-2018 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 3.4E-13 T 11-10-2018 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 SUPERFAMILY SSF56784 6 217 2.07E-43 T 11-10-2018 IPR036412 HAD-like superfamily BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 Gene3D G3DSA:3.40.50.1000 9 201 1.3E-25 T 11-10-2018 IPR023214 HAD superfamily BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 13 191 2.9E-16 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 154 174 5.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 10 21 5.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 136 152 5.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 181 194 5.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_01575 ebe79bb53ab20b981e1f362a69cbe109 225 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 105 118 5.3E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 BED32_08725 86d4775dbb69f1602011af832e8fd154 245 Pfam PF00977 Histidine biosynthesis protein 1 233 1.8E-77 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 BED32_08725 86d4775dbb69f1602011af832e8fd154 245 SUPERFAMILY SSF51366 1 242 8.07E-67 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 BED32_08725 86d4775dbb69f1602011af832e8fd154 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 3.6E-79 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BED32_08725 86d4775dbb69f1602011af832e8fd154 245 Gene3D G3DSA:3.20.20.70 1 245 2.1E-95 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_08725 86d4775dbb69f1602011af832e8fd154 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 35.4 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 BED32_04475 0bacfcae8caaa889a98f86f125586395 205 Hamap MF_01901 Arginine exporter protein ArgO [argO]. 1 205 39.07 T 11-10-2018 IPR023445 Arginine exporter protein ArgO, enterobacteria GO:0015181|GO:0015809 BED32_04475 0bacfcae8caaa889a98f86f125586395 205 Pfam PF01810 LysE type translocator 14 202 8.3E-49 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_04475 0bacfcae8caaa889a98f86f125586395 205 TIGRFAM TIGR00948 2a75: L-lysine exporter 15 191 2.8E-65 T 11-10-2018 IPR004777 L-lysine exporter/arginine exporter GO:0016021 BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 SUPERFAMILY SSF109755 13 230 3.45E-71 T 11-10-2018 BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 Gene3D G3DSA:1.20.58.220 1 120 3.7E-43 T 11-10-2018 IPR038078 PhoU-like domain superfamily BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 PIRSF PIRSF003107 7 226 9.8E-69 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 Gene3D G3DSA:1.20.58.220 121 236 1.0E-32 T 11-10-2018 IPR038078 PhoU-like domain superfamily BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 221 1.2E-74 T 11-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 Pfam PF01895 PhoU domain 128 212 4.8E-17 T 11-10-2018 IPR026022 PhoU domain BED32_21505 59e8b76b8c2e4cea299e2e17a6437c41 240 Pfam PF01895 PhoU domain 26 111 1.5E-22 T 11-10-2018 IPR026022 PhoU domain BED32_03005 60d5bd4dfe44b2d1f7224e1f3f5378dd 134 Pfam PF06295 Protein of unknown function (DUF1043) 6 127 6.4E-51 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 BED32_03005 60d5bd4dfe44b2d1f7224e1f3f5378dd 134 PIRSF PIRSF006318 1 134 2.0E-52 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 BED32_15995 4a9cd2682db321c552197153f199609f 249 SUPERFAMILY SSF48452 32 182 2.88E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 Pfam PF13181 Tetratricopeptide repeat 36 66 5.9E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 SMART SM00028 137 170 1.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 SMART SM00028 33 66 0.019 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 SMART SM00028 67 100 4.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 Gene3D G3DSA:1.25.40.10 31 247 5.0E-41 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 BED32_15995 4a9cd2682db321c552197153f199609f 249 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 10 236 4.6E-81 T 11-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW BED32_08275 83773652d9954a3ac062dbd790c9a198 240 PIRSF PIRSF039085 1 240 5.6E-107 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_08275 83773652d9954a3ac062dbd790c9a198 240 SUPERFAMILY SSF52540 1 235 1.73E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_08275 83773652d9954a3ac062dbd790c9a198 240 Gene3D G3DSA:3.40.50.300 1 240 1.8E-78 T 11-10-2018 BED32_08275 83773652d9954a3ac062dbd790c9a198 240 Pfam PF00005 ABC transporter 17 165 2.7E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_08275 83773652d9954a3ac062dbd790c9a198 240 SMART SM00382 26 213 4.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_13900 2b2ce1c9d7cf74d50251d47422d18cbf 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 287 4.5E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_13900 2b2ce1c9d7cf74d50251d47422d18cbf 293 Gene3D G3DSA:1.10.3720.10 6 288 1.7E-55 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13900 2b2ce1c9d7cf74d50251d47422d18cbf 293 SUPERFAMILY SSF161098 4 284 1.78E-57 T 11-10-2018 IPR035906 MetI-like superfamily BED32_04880 470485588f8c8a8fc45bfc582488974a 201 Pfam PF02613 Nitrate reductase delta subunit 52 156 3.7E-18 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone BED32_04880 470485588f8c8a8fc45bfc582488974a 201 Gene3D G3DSA:1.10.3480.10 2 201 2.8E-49 T 11-10-2018 BED32_04880 470485588f8c8a8fc45bfc582488974a 201 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 1 201 42.984 T 11-10-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 BED32_04880 470485588f8c8a8fc45bfc582488974a 201 PIRSF PIRSF004690 1 201 4.0E-65 T 11-10-2018 IPR026269 Tat proofreading chaperone DmsD-type BED32_04880 470485588f8c8a8fc45bfc582488974a 201 SUPERFAMILY SSF89155 2 201 4.97E-51 T 11-10-2018 IPR036411 TorD-like superfamily BED32_17930 de8625d00fdcabfa6c505eba131cf32b 146 Pfam PF06610 L-alanine exporter 4 142 3.0E-71 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 BED32_17930 de8625d00fdcabfa6c505eba131cf32b 146 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 9 142 1.0E-64 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 BED32_17930 de8625d00fdcabfa6c505eba131cf32b 146 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 1 145 35.43 T 11-10-2018 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 BED32_06365 33113fb5dd9b3c9ce1f6640a71be0b7f 434 Pfam PF00294 pfkB family carbohydrate kinase 138 294 4.4E-8 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB BED32_06365 33113fb5dd9b3c9ce1f6640a71be0b7f 434 SUPERFAMILY SSF53613 36 416 1.64E-43 T 11-10-2018 IPR029056 Ribokinase-like BED32_04850 29ed335a364deb740e1cc1f6a1808214 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 18 274 2.1E-43 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_13085 828e3f60e30520a74b2a77f219a91933 193 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 192 1.5E-54 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB BED32_13085 828e3f60e30520a74b2a77f219a91933 193 Pfam PF13036 Peptidoglycan-synthase activator LpoB 53 190 4.4E-34 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB BED32_13085 828e3f60e30520a74b2a77f219a91933 193 Gene3D G3DSA:3.40.50.10610 57 193 1.8E-52 T 11-10-2018 BED32_13085 828e3f60e30520a74b2a77f219a91933 193 Hamap MF_01889 Penicillin-binding protein activator LpoB [lpoB]. 1 192 36.088 T 11-10-2018 IPR014094 Penicillin-binding protein activator LpoB BED32_11980 631f5c2ecbf99e02854dc8badc608758 206 Gene3D G3DSA:3.90.870.10 1 206 3.7E-69 T 11-10-2018 BED32_11980 631f5c2ecbf99e02854dc8badc608758 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 7.1E-73 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 BED32_11980 631f5c2ecbf99e02854dc8badc608758 206 SUPERFAMILY SSF55821 1 203 3.66E-65 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily BED32_11980 631f5c2ecbf99e02854dc8badc608758 206 Pfam PF01300 Telomere recombination 23 198 5.8E-46 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 BED32_17775 2182782082ed066495331eebb9a89eb7 454 Gene3D G3DSA:1.20.1740.10 10 454 1.8E-57 T 11-10-2018 BED32_17775 2182782082ed066495331eebb9a89eb7 454 PIRSF PIRSF006060 1 453 2.1E-71 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 BED32_17775 2182782082ed066495331eebb9a89eb7 454 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 11-10-2018 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 BED32_17775 2182782082ed066495331eebb9a89eb7 454 Pfam PF00324 Amino acid permease 18 453 7.3E-118 T 11-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 Gene3D G3DSA:3.90.470.10 1 110 2.4E-46 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.2E-50 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 9.7E-38 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 SUPERFAMILY SSF54843 1 109 2.35E-42 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01900 37dd206a14d77ee1c07f68e9ddf79c19 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.77 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_00985 ddafb61a30478b6610f287218682490b 339 SUPERFAMILY SSF161098 89 322 3.6E-22 T 11-10-2018 IPR035906 MetI-like superfamily BED32_00985 ddafb61a30478b6610f287218682490b 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 336 3.6E-47 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_00160 4408c75732ba2fdc4d9449ce56ae239d 232 Gene3D G3DSA:3.40.50.360 1 232 2.8E-77 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_00160 4408c75732ba2fdc4d9449ce56ae239d 232 Pfam PF03358 NADPH-dependent FMN reductase 26 171 2.3E-27 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BED32_00160 4408c75732ba2fdc4d9449ce56ae239d 232 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 6 218 2.1E-112 T 11-10-2018 IPR014063 Arsenate resistance ArsH BED32_00160 4408c75732ba2fdc4d9449ce56ae239d 232 SUPERFAMILY SSF52218 18 219 9.56E-64 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_08570 2f9f918f8055795e4da0cf8b47a737b1 417 SUPERFAMILY SSF51004 16 318 1.33E-8 T 11-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily BED32_08570 2f9f918f8055795e4da0cf8b47a737b1 417 Pfam PF08309 LVIVD repeat 221 250 0.026 T 11-10-2018 IPR013211 LVIVD BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 SUPERFAMILY SSF53067 5 107 2.42E-30 T 11-10-2018 BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 Gene3D G3DSA:3.30.420.40 5 224 5.5E-85 T 11-10-2018 BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 Pfam PF00814 Glycoprotease family 30 152 1.9E-29 T 11-10-2018 IPR000905 Gcp-like domain BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 Gene3D G3DSA:3.30.420.40 96 190 5.5E-85 T 11-10-2018 BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 SUPERFAMILY SSF53067 110 219 7.38E-29 T 11-10-2018 BED32_10275 fcd04fe38b61666a726e8b8987fcd8f1 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 221 9.2E-69 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 BED32_08795 42c8a89e37bdd04e78191e9c629ca6b2 350 Pfam PF13515 Fusaric acid resistance protein-like 31 156 1.7E-14 T 11-10-2018 BED32_04330 c4b971d09940a01149e893d2bf680cc2 197 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 194 2.7E-67 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BED32_04330 c4b971d09940a01149e893d2bf680cc2 197 Pfam PF01725 Ham1 family 4 192 8.5E-57 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 BED32_04330 c4b971d09940a01149e893d2bf680cc2 197 Hamap MF_01405 dITP/XTP pyrophosphatase. 2 196 50.112 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 BED32_04330 c4b971d09940a01149e893d2bf680cc2 197 SUPERFAMILY SSF52972 1 196 9.68E-74 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_04330 c4b971d09940a01149e893d2bf680cc2 197 Gene3D G3DSA:3.90.950.10 1 197 9.5E-83 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like BED32_10395 c43df2cad0f2c4ea071a93112afa6cd4 185 Pfam PF05229 Spore Coat Protein U domain 33 182 5.5E-30 T 11-10-2018 IPR007893 Spore coat protein U BED32_10395 c43df2cad0f2c4ea071a93112afa6cd4 185 SMART SM00972 122 182 4.2E-19 T 11-10-2018 IPR007893 Spore coat protein U BED32_06325 a7cf65301321099213860198596814fe 318 Gene3D G3DSA:3.90.550.10 1 245 1.6E-39 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_06325 a7cf65301321099213860198596814fe 318 SUPERFAMILY SSF53448 7 218 6.43E-41 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_06325 a7cf65301321099213860198596814fe 318 Pfam PF00535 Glycosyl transferase family 2 8 119 1.0E-25 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_12680 ad18525636125b933bacfe5c3a4ca413 183 Pfam PF00293 NUDIX domain 23 128 7.2E-14 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_12680 ad18525636125b933bacfe5c3a4ca413 183 ProSitePatterns PS01293 Nudix CoA signature. 40 60 - T 11-10-2018 IPR000059 NUDIX hydrolase, NudL, conserved site GO:0000287|GO:0009132|GO:0016818|GO:0030145 Reactome: R-HSA-390918|Reactome: R-HSA-9033241 BED32_12680 ad18525636125b933bacfe5c3a4ca413 183 Gene3D G3DSA:3.90.79.10 3 182 1.5E-46 T 11-10-2018 BED32_12680 ad18525636125b933bacfe5c3a4ca413 183 SUPERFAMILY SSF55811 6 174 2.3E-33 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_08175 d9e25d63d8ce6a6003e9f0e7151dd4da 352 Pfam PF00487 Fatty acid desaturase 66 291 1.1E-31 T 11-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 3.9E-37 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 7.7E-16 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 Gene3D G3DSA:1.10.1200.10 1 76 5.4E-29 T 11-10-2018 IPR036736 ACP-like superfamily BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.174 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 0.003 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 BED32_13165 6921b6e3b114446f07f2df933b9c9d46 78 SUPERFAMILY SSF47336 2 76 1.09E-23 T 11-10-2018 IPR036736 ACP-like superfamily BED32_07785 6a7692ae836b7dd50183d4fa529a2b4b 522 PIRSF PIRSF006446 1 521 3.5E-139 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BED32_07785 6a7692ae836b7dd50183d4fa529a2b4b 522 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 2.4E-171 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 BED32_09020 987c357aac1f4506350a778d839e8f0d 225 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 17 215 6.9E-51 T 11-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 BED32_09020 987c357aac1f4506350a778d839e8f0d 225 Pfam PF02361 Cobalt transport protein 14 221 2.5E-44 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component BED32_14075 cfb6300624cf970bc50e5f787e3daac0 163 ProDom PD022058 PSAF MYFF 1 162 2.0E-71 T 11-10-2018 IPR035182 Protein of unknown function PsaF BED32_14075 cfb6300624cf970bc50e5f787e3daac0 163 Pfam PF17550 Family of unknown function 1 161 2.0E-61 T 11-10-2018 IPR035182 Protein of unknown function PsaF BED32_07605 47d46f7a990ba400ca3fbca3af863f1b 95 Pfam PF01402 Ribbon-helix-helix protein, copG family 52 88 6.7E-8 T 11-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 BED32_09040 1ac703734cc51d42dd862af33d9ce467 248 Pfam PF02654 Cobalamin-5-phosphate synthase 10 245 1.5E-47 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BED32_09040 1ac703734cc51d42dd862af33d9ce467 248 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 248 43.387 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BED32_09040 1ac703734cc51d42dd862af33d9ce467 248 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 5 247 3.0E-58 T 11-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 BED32_05380 f1d314741b7bef3d05acecd2daf38c83 164 Pfam PF04448 Protein of unknown function (DUF551) 93 162 1.2E-11 T 11-10-2018 IPR007539 Domain of unknown function DUF551 BED32_11725 f1d314741b7bef3d05acecd2daf38c83 164 Pfam PF04448 Protein of unknown function (DUF551) 93 162 1.2E-11 T 11-10-2018 IPR007539 Domain of unknown function DUF551 BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 Pfam PF01380 SIS domain 126 255 1.9E-28 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 SUPERFAMILY SSF53697 98 276 5.26E-38 T 11-10-2018 BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 Gene3D G3DSA:1.10.10.10 1 80 8.4E-22 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 75 2.3E-24 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 SUPERFAMILY SSF46689 1 73 3.4E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_16210 46d96c0117ee66fdf8599466a0303ff5 280 Gene3D G3DSA:3.40.50.10490 95 280 1.8E-42 T 11-10-2018 BED32_10050 baf5fce1a252023449e4fe318c45105e 212 SUPERFAMILY SSF89623 1 161 1.7E-35 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BED32_10050 baf5fce1a252023449e4fe318c45105e 212 Pfam PF02502 Ribose/Galactose Isomerase 3 142 3.1E-29 T 11-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BED32_10050 baf5fce1a252023449e4fe318c45105e 212 Pfam PF12408 Ribose-5-phosphate isomerase 164 210 2.3E-23 T 11-10-2018 IPR022133 Ribose-5-phosphate isomerase, C-terminal BED32_10050 baf5fce1a252023449e4fe318c45105e 212 Gene3D G3DSA:3.40.1400.10 1 212 6.8E-97 T 11-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 BED32_17510 9aaa26bf9b3b4eca9bdb2e02ebbfc80a 192 Gene3D G3DSA:1.20.120.740 5 192 1.7E-56 T 11-10-2018 BED32_17510 9aaa26bf9b3b4eca9bdb2e02ebbfc80a 192 SUPERFAMILY SSF101327 8 176 1.26E-50 T 11-10-2018 IPR036255 YgfB-like superfamily BED32_17510 9aaa26bf9b3b4eca9bdb2e02ebbfc80a 192 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 6 190 36.984 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 BED32_17510 9aaa26bf9b3b4eca9bdb2e02ebbfc80a 192 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 15 166 1.0E-10 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 BED32_17510 9aaa26bf9b3b4eca9bdb2e02ebbfc80a 192 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 177 4.7E-36 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 BED32_20770 aa4080ef00274fd6394834d85cdb38c5 729 Pfam PF08964 Beta/Gamma crystallin 41 119 1.1E-8 T 11-10-2018 IPR015059 Calcium-dependent cell adhesion molecule, N-terminal GO:0016020|GO:0098609 BED32_20770 aa4080ef00274fd6394834d85cdb38c5 729 SUPERFAMILY SSF49695 39 126 9.98E-13 T 11-10-2018 IPR011024 Gamma-crystallin-like BED32_20770 aa4080ef00274fd6394834d85cdb38c5 729 Gene3D G3DSA:2.60.20.10 40 128 1.9E-21 T 11-10-2018 BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 Pfam PF00929 Exonuclease 9 175 1.1E-40 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 Gene3D G3DSA:3.20.20.140 208 260 9.9E-8 T 11-10-2018 BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 SUPERFAMILY SSF53098 4 185 2.03E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 7 242 1.2E-92 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 Gene3D G3DSA:3.30.420.10 2 190 1.2E-60 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 SMART SM00479 7 184 1.9E-51 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III BED32_16640 bb166b29ebd67f6ecaf695eb825da34f 260 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 225 6.1E-89 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 BED32_11200 089b806d949c614a6d48ea21953a70a0 201 SUPERFAMILY SSF52218 1 199 6.81E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_11200 089b806d949c614a6d48ea21953a70a0 201 Pfam PF02525 Flavodoxin-like fold 3 195 4.2E-47 T 11-10-2018 IPR003680 Flavodoxin-like fold BED32_11200 089b806d949c614a6d48ea21953a70a0 201 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 32.899 T 11-10-2018 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 BED32_11200 089b806d949c614a6d48ea21953a70a0 201 Gene3D G3DSA:3.40.50.360 1 201 6.1E-66 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_16145 85a297d07d0fbbd159382d3f4875895c 417 Pfam PF10797 Protein of unknown function 1 414 2.4E-163 T 11-10-2018 IPR019733 Uncharacterised protein family YhfT BED32_07475 cb309f1bce5d7ee89d97049a2c520396 194 SUPERFAMILY SSF50475 19 177 3.51E-19 T 11-10-2018 BED32_07475 cb309f1bce5d7ee89d97049a2c520396 194 Gene3D G3DSA:2.30.110.10 24 152 5.0E-24 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 BED32_07475 cb309f1bce5d7ee89d97049a2c520396 194 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 14 187 1.1E-66 T 11-10-2018 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent BED32_07475 cb309f1bce5d7ee89d97049a2c520396 194 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 35 127 1.8E-12 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 BED32_08890 48aafae85cccc80584512109d734a8a5 215 Pfam PF06130 Phosphate propanoyltransferase 23 101 1.7E-25 T 11-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BED32_08890 48aafae85cccc80584512109d734a8a5 215 Pfam PF06130 Phosphate propanoyltransferase 130 196 2.8E-17 T 11-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BED32_08890 48aafae85cccc80584512109d734a8a5 215 PIRSF PIRSF010130 1 208 3.3E-83 T 11-10-2018 IPR008300 Phosphate propanoyltransferase GO:0016747 KEGG: 00640+2.3.1.222|MetaCyc: PWY-5437|MetaCyc: PWY-7013 BED32_02795 37c91c80b59e9b69bbbca4dce6dd90c6 121 TIGRFAM TIGR03577 EF_0830: conserved hypothetical protein EF_0830/AHA_3911 4 118 7.0E-68 T 11-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 BED32_02795 37c91c80b59e9b69bbbca4dce6dd90c6 121 Pfam PF14272 Glycine-rich SFCGS 4 117 5.3E-62 T 11-10-2018 IPR020034 Conserved hypothetical protein CHP03577, EF0830/AHA3911 BED32_14830 42983e78809e52e146edb334463fea4c 377 Pfam PF03600 Citrate transporter 30 314 1.8E-23 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 BED32_11890 4b804c9672aaf1fcaa95bc61ef86dadf 86 Gene3D G3DSA:3.30.1660.10 19 86 3.5E-20 T 11-10-2018 IPR025543 Dodecin-like BED32_11890 4b804c9672aaf1fcaa95bc61ef86dadf 86 Pfam PF07338 Protein of unknown function (DUF1471) 34 86 5.5E-20 T 11-10-2018 IPR010854 Domain of unknown function DUF1471 BED32_11890 4b804c9672aaf1fcaa95bc61ef86dadf 86 SUPERFAMILY SSF159871 3 86 5.23E-25 T 11-10-2018 IPR036275 YdgH-like superfamily BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 95 117 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 51 69 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 239 256 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 274 293 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 149 171 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00183 E.coli/Salmonella-type porin signature 22 38 6.1E-71 T 11-10-2018 IPR001897 Porin, gammaproteobacterial GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 SUPERFAMILY SSF56935 22 367 7.33E-82 T 11-10-2018 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 ProSitePatterns PS00576 General diffusion Gram-negative porins signature. 319 335 - T 11-10-2018 IPR013793 Porin, Gram-negative type, conserved site BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 233 245 2.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 52 63 2.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 319 336 2.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 95 105 2.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 151 162 2.9E-16 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 Gene3D G3DSA:2.40.160.10 22 367 1.1E-156 T 11-10-2018 IPR023614 Porin domain superfamily BED32_14370 b53a4f76e42cdbe644f1330b8ca4806d 367 Pfam PF00267 Gram-negative porin 27 367 2.4E-145 T 11-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 BED32_16985 4f4c9db50e151bd2b617e09be9ad246f 269 Pfam PF00899 ThiF family 28 260 2.0E-38 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 BED32_16985 4f4c9db50e151bd2b617e09be9ad246f 269 SUPERFAMILY SSF69572 6 259 2.22E-63 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 BED32_16985 4f4c9db50e151bd2b617e09be9ad246f 269 Gene3D G3DSA:3.40.50.720 1 269 1.0E-111 T 11-10-2018 BED32_13985 5ee32bcf5845b8f3e199bc152d5ec538 223 SUPERFAMILY SSF161098 14 205 3.01E-43 T 11-10-2018 IPR035906 MetI-like superfamily BED32_13985 5ee32bcf5845b8f3e199bc152d5ec538 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 205 9.7E-20 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_13985 5ee32bcf5845b8f3e199bc152d5ec538 223 Gene3D G3DSA:1.10.3720.10 8 221 9.5E-48 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10330 719838a2824a8dba1a4a7ce85e273e17 148 PIRSF PIRSF006173 1 145 2.3E-65 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 BED32_10330 719838a2824a8dba1a4a7ce85e273e17 148 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 2 145 41.143 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 BED32_10330 719838a2824a8dba1a4a7ce85e273e17 148 Pfam PF03692 Putative zinc- or iron-chelating domain 24 92 2.4E-7 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein BED32_08135 f331c05f8d9a2bb3801bfdda248b3e78 156 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.4E-26 T 11-10-2018 IPR009921 Domain of unknown function DUF1456 BED32_08135 f331c05f8d9a2bb3801bfdda248b3e78 156 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 1.1E-24 T 11-10-2018 IPR009921 Domain of unknown function DUF1456 BED32_05465 834d151fce282ae88e9fdfc1cf109061 558 TIGRFAM TIGR01630 psiM2_ORF9: phage uncharacterized protein, C-terminal domain 367 484 5.5E-15 T 11-10-2018 IPR006517 Archaeophage PsiM2, terminase large subunit BED32_15560 fca0b03582fa3df19fca12432c8bb88a 63 Pfam PF13980 Uncharacterised protein family (UPF0370) 1 60 4.4E-35 T 11-10-2018 IPR020910 Uncharacterised protein family UPF0370 BED32_15560 fca0b03582fa3df19fca12432c8bb88a 63 Hamap MF_01566 UPF0370 protein YpfN [ypfN]. 1 61 25.787 T 11-10-2018 IPR020910 Uncharacterised protein family UPF0370 BED32_11095 514f9de1028121899a9cbc460ceb8118 79 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD) 9 69 7.3E-27 T 11-10-2018 IPR014321 Phage shock protein, PspD BED32_11095 514f9de1028121899a9cbc460ceb8118 79 TIGRFAM TIGR02979 phageshock_pspD: phage shock protein PspD 9 68 6.3E-25 T 11-10-2018 IPR014321 Phage shock protein, PspD BED32_05100 4cc5d7d78b1846f0dca2e6e741858152 113 PIRSF PIRSF034456 7 113 5.5E-54 T 11-10-2018 IPR017028 Uncharacterised conserved protein UCP034456 BED32_05100 4cc5d7d78b1846f0dca2e6e741858152 113 Pfam PF10043 Predicted periplasmic lipoprotein (DUF2279) 31 109 1.5E-7 T 11-10-2018 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein BED32_01940 5e8a0524dabb069c2dce085b3d078252 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 BED32_01940 5e8a0524dabb069c2dce085b3d078252 101 SUPERFAMILY SSF57716 2 101 1.71E-36 T 11-10-2018 BED32_01940 5e8a0524dabb069c2dce085b3d078252 101 Gene3D G3DSA:4.10.830.10 41 101 1.8E-23 T 11-10-2018 BED32_01940 5e8a0524dabb069c2dce085b3d078252 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 1.8E-26 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01940 5e8a0524dabb069c2dce085b3d078252 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.588 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid BED32_10265 135ccef50fbf3c7f2871495018e70deb 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 BED32_10265 135ccef50fbf3c7f2871495018e70deb 114 SUPERFAMILY SSF55298 2 114 7.7E-26 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BED32_10265 135ccef50fbf3c7f2871495018e70deb 114 Pfam PF01042 Endoribonuclease L-PSP 4 113 4.0E-25 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 BED32_10265 135ccef50fbf3c7f2871495018e70deb 114 Gene3D G3DSA:3.30.1330.40 1 114 1.0E-33 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 BED32_06770 5545b691e706ef8cd3eb7de4aabd165a 100 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 9 88 1.8E-11 T 11-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative BED32_00495 0b31700413d69db3ca3f6e7ba3d0f5ad 431 Gene3D G3DSA:2.120.10.30 279 431 1.3E-18 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like BED32_00495 0b31700413d69db3ca3f6e7ba3d0f5ad 431 Pfam PF07676 WD40-like Beta Propeller Repeat 400 426 0.1 T 11-10-2018 IPR011659 WD40-like Beta Propeller BED32_00495 0b31700413d69db3ca3f6e7ba3d0f5ad 431 SUPERFAMILY SSF82171 28 429 2.43E-19 T 11-10-2018 BED32_00495 0b31700413d69db3ca3f6e7ba3d0f5ad 431 Pfam PF12566 Protein of unknown function (DUF3748) 73 191 8.2E-56 T 11-10-2018 IPR022223 Protein of unknown function DUF3748 BED32_16630 44b17e6a87ace382124d5e154a067533 334 Gene3D G3DSA:3.40.190.100 113 252 6.2E-139 T 11-10-2018 BED32_16630 44b17e6a87ace382124d5e154a067533 334 SUPERFAMILY SSF53850 24 324 2.82E-93 T 11-10-2018 BED32_16630 44b17e6a87ace382124d5e154a067533 334 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 311 1.7E-52 T 11-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 BED32_16630 44b17e6a87ace382124d5e154a067533 334 Gene3D G3DSA:3.40.190.10 25 324 6.2E-139 T 11-10-2018 BED32_20785 f90d9d5d38ef0728ba120a1b5f454db6 480 SUPERFAMILY SSF103473 19 447 3.27E-38 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_20785 f90d9d5d38ef0728ba120a1b5f454db6 480 Gene3D G3DSA:1.20.1720.10 18 231 1.3E-26 T 11-10-2018 BED32_20785 f90d9d5d38ef0728ba120a1b5f454db6 480 Gene3D G3DSA:1.20.1250.20 266 469 1.8E-7 T 11-10-2018 BED32_20785 f90d9d5d38ef0728ba120a1b5f454db6 480 Pfam PF07690 Major Facilitator Superfamily 25 415 1.2E-31 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_11850 04d064a4c626433a4c99737c5c450858 96 Pfam PF04328 Selenoprotein, putative 33 96 7.5E-25 T 11-10-2018 IPR007423 Selenoprotein, putative BED32_02805 97e8b4ab714d66a2994d661950f5f42f 258 Pfam PF14188 Domain of unknown function (DUF4311) 25 236 3.2E-122 T 11-10-2018 IPR020042 Protein of unknown function DUF4311 BED32_02805 97e8b4ab714d66a2994d661950f5f42f 258 TIGRFAM TIGR03580 EF_0832: conserved hypothetical protein EF_0832/AHA_3913 2 258 2.2E-152 T 11-10-2018 IPR020042 Protein of unknown function DUF4311 BED32_17370 6a6d0731e73e101c28e7f6df4e06dcec 507 Pfam PF04851 Type III restriction enzyme, res subunit 7 122 3.3E-6 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 BED32_17370 6a6d0731e73e101c28e7f6df4e06dcec 507 Gene3D G3DSA:3.40.50.300 1 135 4.9E-6 T 11-10-2018 BED32_17370 6a6d0731e73e101c28e7f6df4e06dcec 507 SUPERFAMILY SSF52540 6 136 1.82E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_01580 3de105cb72d0a77ff08ae10022da347b 715 Pfam PF07095 Intracellular growth attenuator protein IgaA 1 710 0.0 T 11-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 BED32_01580 3de105cb72d0a77ff08ae10022da347b 715 ProDom PD147088 MEMBRANE INNER TRANSMEMBRANE IGAA HOMOLOG DEHYDROGENASE GROWTH ATTENUATOR INTRACELLULAR GENOME 22 704 0.0 T 11-10-2018 IPR010771 Intracellular growth attenuator IgaA GO:0009276|GO:0016021 BED32_06030 4dd3727ced3271284c6a9e0927c2bc89 115 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 25 98 9.7E-19 T 11-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 BED32_06030 4dd3727ced3271284c6a9e0927c2bc89 115 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 18 113 6.5E-40 T 11-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 BED32_00075 193af6d73d3a20597276037a992d1671 288 Pfam PF03421 YopJ Serine/Threonine acetyltransferase 26 198 7.4E-62 T 11-10-2018 IPR005083 Serine/Threonine acetyltransferase, YopJ BED32_15780 8f03f454a5182fca903eda479f96523d 112 Gene3D G3DSA:2.30.29.80 2 112 1.4E-47 T 11-10-2018 BED32_15780 8f03f454a5182fca903eda479f96523d 112 SUPERFAMILY SSF160113 55 109 2.75E-16 T 11-10-2018 IPR036913 YegP-like superfamily BED32_15780 8f03f454a5182fca903eda479f96523d 112 SUPERFAMILY SSF160113 4 58 3.53E-19 T 11-10-2018 IPR036913 YegP-like superfamily BED32_15780 8f03f454a5182fca903eda479f96523d 112 Pfam PF07411 Domain of unknown function (DUF1508) 11 58 7.2E-23 T 11-10-2018 IPR010879 Domain of unknown function DUF1508 BED32_15780 8f03f454a5182fca903eda479f96523d 112 Pfam PF07411 Domain of unknown function (DUF1508) 63 109 1.4E-20 T 11-10-2018 IPR010879 Domain of unknown function DUF1508 BED32_10940 c2322d46aebe9c1fc5a558ffbeecd70c 298 PRINTS PR00069 Aldo-keto reductase signature 143 160 2.2E-7 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_10940 c2322d46aebe9c1fc5a558ffbeecd70c 298 PRINTS PR00069 Aldo-keto reductase signature 112 130 2.2E-7 T 11-10-2018 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 BED32_10940 c2322d46aebe9c1fc5a558ffbeecd70c 298 Pfam PF00248 Aldo/keto reductase family 17 291 6.2E-65 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_10940 c2322d46aebe9c1fc5a558ffbeecd70c 298 Gene3D G3DSA:3.20.20.100 2 298 1.1E-108 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_10940 c2322d46aebe9c1fc5a558ffbeecd70c 298 SUPERFAMILY SSF51430 10 295 8.64E-74 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_20850 eb2f8deeecade8f5b97feb8ad71c7c80 290 Pfam PF15644 Papain fold toxin 1, glutamine deamidase 122 225 1.0E-6 T 11-10-2018 IPR028908 Tox-PL domain BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 SUPERFAMILY SSF55486 3 493 1.2E-122 T 11-10-2018 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 Gene3D G3DSA:1.10.1370.30 1 493 6.6E-202 T 11-10-2018 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 329 348 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 242 261 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 399 420 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 262 281 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 289 305 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 146 166 7.4E-39 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 12 492 5.8E-97 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_11230 51eb58c8479cbfe89a629f4fe461357a 493 PIRSF PIRSF006615 1 493 5.2E-199 T 11-10-2018 IPR001333 Peptidase M32, carboxypeptidase Taq GO:0004181|GO:0006508 BED32_17785 becffd2500379105d75189b2ce42f531 191 SUPERFAMILY SSF55846 7 185 4.32E-67 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_17785 becffd2500379105d75189b2ce42f531 191 Gene3D G3DSA:3.40.80.10 8 188 5.6E-58 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_17785 becffd2500379105d75189b2ce42f531 191 SMART SM00644 22 172 1.2E-53 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_17785 becffd2500379105d75189b2ce42f531 191 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 35 173 3.4E-26 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 BED32_16920 a9ba6e1cd9efdcbad5d50a46e146cf83 257 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_16920 a9ba6e1cd9efdcbad5d50a46e146cf83 257 Pfam PF00849 RNA pseudouridylate synthase 10 169 3.8E-33 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_16920 a9ba6e1cd9efdcbad5d50a46e146cf83 257 Gene3D G3DSA:3.30.2350.10 3 235 6.5E-62 T 11-10-2018 BED32_16920 a9ba6e1cd9efdcbad5d50a46e146cf83 257 SUPERFAMILY SSF55120 2 236 1.33E-61 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_17385 93922b3b218debb57c55f03d49ae0a31 182 Pfam PF00589 Phage integrase family 35 168 1.2E-20 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_17385 93922b3b218debb57c55f03d49ae0a31 182 SUPERFAMILY SSF56349 9 172 7.65E-30 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_17385 93922b3b218debb57c55f03d49ae0a31 182 Gene3D G3DSA:1.10.443.10 12 180 1.3E-29 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_21385 5c27e532ec4b8ee92e5c1c29aaf34028 623 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 6 623 33.783 T 11-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup BED32_21385 5c27e532ec4b8ee92e5c1c29aaf34028 623 TIGRFAM TIGR00794 kup: potassium uptake protein 98 551 3.5E-184 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 BED32_21385 5c27e532ec4b8ee92e5c1c29aaf34028 623 Pfam PF02705 K+ potassium transporter 15 545 5.7E-209 T 11-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 BED32_18480 4c703a470f538a3081ae8d5195838b8a 466 Gene3D G3DSA:3.40.50.2000 242 435 4.1E-14 T 11-10-2018 BED32_18480 4c703a470f538a3081ae8d5195838b8a 466 SUPERFAMILY SSF53756 120 429 1.33E-11 T 11-10-2018 BED32_15595 4a0ccbd61b9eceb52462a268198086fe 149 Pfam PF03245 Bacteriophage Rz lysis protein 36 147 1.4E-37 T 11-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 BED32_06935 f1ceb02d87f4bae17c19cee83b2d1282 97 SUPERFAMILY SSF47413 6 79 6.56E-23 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_06935 f1ceb02d87f4bae17c19cee83b2d1282 97 Gene3D G3DSA:1.10.260.40 2 82 1.5E-36 T 11-10-2018 BED32_06935 f1ceb02d87f4bae17c19cee83b2d1282 97 Pfam PF05269 Bacteriophage CII protein 1 87 6.3E-37 T 11-10-2018 IPR007933 Transcription activator CII GO:0003677|GO:0006355 BED32_04405 3e2f0a35ed86d575f3ab4ccbc7835e49 400 Pfam PF00872 Transposase, Mutator family 10 373 2.0E-101 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_13920 75a4f20a6bbfecad05fa426fcb391606 102 Pfam PF07214 Protein of unknown function (DUF1418) 1 96 5.8E-39 T 11-10-2018 IPR010815 Protein of unknown function DUF1418 BED32_18825 64100284772b6b9c8a7937a7be86d757 410 Gene3D G3DSA:1.50.10.100 30 402 4.1E-117 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_18825 64100284772b6b9c8a7937a7be86d757 410 SUPERFAMILY SSF48230 78 357 5.77E-49 T 11-10-2018 IPR008929 Chondroitin AC/alginate lyase Reactome: R-HSA-2022923 BED32_18825 64100284772b6b9c8a7937a7be86d757 410 Pfam PF05426 Alginate lyase 71 350 3.4E-71 T 11-10-2018 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 BED32_15070 e9372b29be7c02ba4a2e07d07d2fa029 46 Gene3D G3DSA:3.30.160.390 5 42 6.2E-9 T 11-10-2018 IPR038488 Integrase, DNA-binding domain superfamily BED32_08440 5907fe3c3915c1b325b930ca59a0cfb2 330 Gene3D G3DSA:3.40.50.2300 27 301 4.1E-123 T 11-10-2018 BED32_08440 5907fe3c3915c1b325b930ca59a0cfb2 330 SUPERFAMILY SSF53822 24 329 1.04E-85 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_08440 5907fe3c3915c1b325b930ca59a0cfb2 330 Pfam PF13407 Periplasmic binding protein domain 27 298 1.5E-65 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_08440 5907fe3c3915c1b325b930ca59a0cfb2 330 Gene3D G3DSA:3.40.50.2300 133 278 4.1E-123 T 11-10-2018 BED32_18055 a57c3b7b93e40c01b1b059f68c465d7c 206 SUPERFAMILY SSF55120 3 203 3.04E-59 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18055 a57c3b7b93e40c01b1b059f68c465d7c 206 Pfam PF00849 RNA pseudouridylate synthase 9 156 1.3E-25 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_18055 a57c3b7b93e40c01b1b059f68c465d7c 206 Gene3D G3DSA:3.30.2350.10 1 205 1.7E-68 T 11-10-2018 BED32_18055 a57c3b7b93e40c01b1b059f68c465d7c 206 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 BED32_14670 8342f1f858d23bfbd9448a8503b851f1 147 SUPERFAMILY SSF55804 1 145 3.53E-40 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_14670 8342f1f858d23bfbd9448a8503b851f1 147 Gene3D G3DSA:3.40.930.10 1 147 8.0E-59 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 BED32_14670 8342f1f858d23bfbd9448a8503b851f1 147 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 3.6E-37 T 11-10-2018 IPR002178 PTS EIIA type-2 domain BED32_10810 1574a9b6417558d60f7c459cbe011a41 503 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 21 494 1.2E-192 T 11-10-2018 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 BED32_10810 1574a9b6417558d60f7c459cbe011a41 503 Pfam PF01458 Uncharacterized protein family (UPF0051) 242 474 2.4E-67 T 11-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 BED32_10810 1574a9b6417558d60f7c459cbe011a41 503 SUPERFAMILY SSF101960 41 500 1.44E-134 T 11-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily BED32_12115 0d5fd81729bb8d7fa4fc73ae72d7fd27 210 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 4 202 6.5E-80 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_12115 0d5fd81729bb8d7fa4fc73ae72d7fd27 210 Pfam PF01914 MarC family integral membrane protein 6 206 2.1E-73 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 Gene3D G3DSA:3.20.20.70 13 384 1.2E-75 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 Pfam PF04055 Radical SAM superfamily 19 168 1.5E-11 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 SUPERFAMILY SSF102114 15 345 4.84E-30 T 11-10-2018 BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 TIGRFAM TIGR04496 rSAM_XyeB: radical SAM/SPASM domain peptide maturase, XyeB family 10 393 1.8E-239 T 11-10-2018 IPR030989 Radical SAM/SPASM domain peptide maturase, XyeB family BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 BED32_13110 f66d599618fb4e42bfcbfed6bc556d31 394 Pfam PF13394 4Fe-4S single cluster domain 22 116 2.2E-5 T 11-10-2018 BED32_08660 3e94064864de4af83b820c90011ce03b 426 Gene3D G3DSA:3.40.50.2000 246 398 1.5E-34 T 11-10-2018 BED32_08660 3e94064864de4af83b820c90011ce03b 426 Gene3D G3DSA:3.40.50.11090 81 245 2.6E-10 T 11-10-2018 BED32_08660 3e94064864de4af83b820c90011ce03b 426 SUPERFAMILY SSF53756 207 418 7.53E-16 T 11-10-2018 BED32_08660 3e94064864de4af83b820c90011ce03b 426 Pfam PF13692 Glycosyl transferases group 1 260 388 7.7E-7 T 11-10-2018 BED32_10945 8e904c9b71c6595114b50b9ea0350e89 674 Pfam PF04632 Fusaric acid resistance protein family 20 661 7.3E-189 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 BED32_03675 f55c9d1856dc0f93f01c085b06decc34 64 Pfam PF13683 Integrase core domain 1 50 5.1E-7 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 BED32_03675 f55c9d1856dc0f93f01c085b06decc34 64 SUPERFAMILY SSF53098 1 60 8.16E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_10630 31de0c4677c07457e9f8c8a057de05b1 237 Pfam PF04474 Protein of unknown function (DUF554) 2 229 1.3E-62 T 11-10-2018 IPR007563 Protein of unknown function DUF554 BED32_21895 1f2962ecb32c85dfd85a43ca98915fa6 168 Pfam PF09676 Type IV conjugative transfer system lipoprotein (TraV) 26 144 9.9E-16 T 11-10-2018 IPR014118 Type IV conjugative transfer system protein TraV BED32_06485 22d419914b49100ffaf08d9e06d11514 384 Pfam PF00589 Phage integrase family 185 353 1.5E-39 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 BED32_06485 22d419914b49100ffaf08d9e06d11514 384 Gene3D G3DSA:1.10.443.10 183 366 3.9E-34 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 BED32_06485 22d419914b49100ffaf08d9e06d11514 384 SUPERFAMILY SSF56349 58 361 7.06E-48 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 BED32_06485 22d419914b49100ffaf08d9e06d11514 384 Gene3D G3DSA:1.10.150.130 54 182 2.3E-9 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal BED32_03515 62712268bd5eadddaf70500929d62c86 193 Gene3D G3DSA:3.40.50.1820 1 192 1.9E-64 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_03515 62712268bd5eadddaf70500929d62c86 193 SUPERFAMILY SSF53474 3 188 4.5E-17 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_03515 62712268bd5eadddaf70500929d62c86 193 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 188 7.1E-70 T 11-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA BED32_20045 df3bdf16ed01badd76763832ea9134bb 603 Pfam PF02554 Carbon starvation protein CstA 4 367 6.7E-139 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 BED32_20045 df3bdf16ed01badd76763832ea9134bb 603 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 417 538 3.1E-27 T 11-10-2018 IPR025299 CstA, C-terminal domain BED32_15190 2c472bb3b70446f595d3ef216174da2d 176 Pfam PF09900 Predicted membrane protein (DUF2127) 23 161 8.4E-30 T 11-10-2018 IPR021125 Protein of unknown function DUF2127 BED32_15190 2c472bb3b70446f595d3ef216174da2d 176 PIRSF PIRSF034455 3 171 6.0E-48 T 11-10-2018 IPR014591 Uncharacterised conserved protein UCP034455 BED32_11895 b7372cb96f1900ffaf8669a46b68fd04 400 TIGRFAM TIGR00843 benE: benzoate transporter 10 386 9.8E-142 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 BED32_11895 b7372cb96f1900ffaf8669a46b68fd04 400 Pfam PF03594 Benzoate membrane transport protein 9 384 1.3E-139 T 11-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 BED32_07035 892007ea6a8fca932da6daae6b77e1ba 104 Pfam PF16083 LydA holin phage, holin superfamily III 16 90 2.1E-13 T 11-10-2018 IPR032126 LydA-like holin BED32_14225 61f7ebf7dbb6b24c4000f2b0725c9e30 333 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 330 45.54 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 BED32_14225 61f7ebf7dbb6b24c4000f2b0725c9e30 333 Pfam PF04245 37-kD nucleoid-associated bacterial protein 10 324 5.8E-98 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 BED32_20395 b0981f13cbadf4fd51505b8338654846 339 Pfam PF01548 Transposase 6 146 9.0E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_20395 b0981f13cbadf4fd51505b8338654846 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 22 261 42.826 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 Gene3D G3DSA:3.40.50.150 37 266 1.3E-66 T 11-10-2018 BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 Pfam PF13649 Methyltransferase domain 79 177 9.3E-14 T 11-10-2018 BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 23 261 9.1E-126 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 SUPERFAMILY SSF53335 39 261 4.03E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_10145 bacabbab835cfaf47d5652a980014f7a 266 PIRSF PIRSF006325 20 262 2.7E-132 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 BED32_07675 9f1363cc87ce498927e3873966978583 135 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 45 63 5.1E-6 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 BED32_07675 9f1363cc87ce498927e3873966978583 135 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 2 18 5.1E-6 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 BED32_07675 9f1363cc87ce498927e3873966978583 135 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 67 89 5.1E-6 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 BED32_07675 9f1363cc87ce498927e3873966978583 135 Pfam PF02794 RTX toxin acyltransferase family 1 121 4.0E-37 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 BED32_09195 c34a18ea8edecd4e0cbfc7e6443c34d8 343 Gene3D G3DSA:3.40.190.10 133 320 1.1E-115 T 11-10-2018 BED32_09195 c34a18ea8edecd4e0cbfc7e6443c34d8 343 SUPERFAMILY SSF53850 24 328 2.77E-68 T 11-10-2018 BED32_09195 c34a18ea8edecd4e0cbfc7e6443c34d8 343 PIRSF PIRSF002825 1 340 1.2E-65 T 11-10-2018 IPR026045 Ferric binding protein BED32_09195 c34a18ea8edecd4e0cbfc7e6443c34d8 343 Pfam PF13343 Bacterial extracellular solute-binding protein 76 284 1.7E-29 T 11-10-2018 BED32_09195 c34a18ea8edecd4e0cbfc7e6443c34d8 343 Gene3D G3DSA:3.40.190.10 31 306 1.1E-115 T 11-10-2018 BED32_04005 a71c47020e1c6e64e686bed6770ba8ed 328 Gene3D G3DSA:3.30.70.20 20 167 4.7E-49 T 11-10-2018 BED32_04005 a71c47020e1c6e64e686bed6770ba8ed 328 SUPERFAMILY SSF54862 23 316 8.37E-69 T 11-10-2018 BED32_04005 a71c47020e1c6e64e686bed6770ba8ed 328 Pfam PF13247 4Fe-4S dicluster domain 97 198 1.3E-22 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain BED32_04005 a71c47020e1c6e64e686bed6770ba8ed 328 Gene3D G3DSA:3.30.70.20 21 253 4.7E-49 T 11-10-2018 BED32_04005 a71c47020e1c6e64e686bed6770ba8ed 328 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 136 147 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site BED32_20050 07a3930462750c6ab5b6e40f907d2e80 265 Gene3D G3DSA:3.90.190.10 13 264 3.4E-55 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_20050 07a3930462750c6ab5b6e40f907d2e80 265 Pfam PF13350 Tyrosine phosphatase family 13 265 1.1E-59 T 11-10-2018 IPR026893 Tyrosine/serine-protein phosphatase IphP-type BED32_20050 07a3930462750c6ab5b6e40f907d2e80 265 SUPERFAMILY SSF52799 12 264 2.94E-47 T 11-10-2018 IPR029021 Protein-tyrosine phosphatase-like BED32_14900 ba3ad358b6067a7f8e712d8c6b22aa85 268 Pfam PF01925 Sulfite exporter TauE/SafE 14 248 6.5E-46 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BED32_10405 78dd58fb13a842a7ac7f5f5105aa71a0 178 SMART SM00972 116 175 6.4E-20 T 11-10-2018 IPR007893 Spore coat protein U BED32_10405 78dd58fb13a842a7ac7f5f5105aa71a0 178 Pfam PF05229 Spore Coat Protein U domain 28 175 6.6E-29 T 11-10-2018 IPR007893 Spore coat protein U BED32_08630 6adfb5cb3c17900b7aaaf5e056815b91 312 Gene3D G3DSA:3.90.550.10 1 256 1.4E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_08630 6adfb5cb3c17900b7aaaf5e056815b91 312 Pfam PF00535 Glycosyl transferase family 2 13 118 9.1E-16 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 BED32_08630 6adfb5cb3c17900b7aaaf5e056815b91 312 SUPERFAMILY SSF53448 9 238 1.31E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases BED32_13810 4c9153775b22b394062e70349c02f1c3 554 SUPERFAMILY SSF52540 1 334 3.84E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_13810 4c9153775b22b394062e70349c02f1c3 554 Pfam PF11398 Protein of unknown function (DUF2813) 1 377 4.0E-162 T 11-10-2018 IPR022602 Protein of unknown function DUF2813 BED32_13810 4c9153775b22b394062e70349c02f1c3 554 Gene3D G3DSA:3.40.50.300 1 349 3.9E-14 T 11-10-2018 BED32_19760 73fa6af4a035b6f3e52b30e3fed2bed5 217 Pfam PF07356 Protein of unknown function (DUF1481) 28 213 2.4E-76 T 11-10-2018 IPR010858 Protein of unknown function DUF1481 BED32_07940 f38be37a289140fdde637865e36dec2f 46 Hamap MF_01484 Multidrug efflux pump accessory protein AcrZ [acrZ]. 1 46 18.592 T 11-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 BED32_07940 f38be37a289140fdde637865e36dec2f 46 Pfam PF10766 Multidrug efflux pump-associated protein AcrZ 1 45 1.8E-28 T 11-10-2018 IPR019702 Multidrug efflux pump accessory protein AcrZ GO:0005886|GO:0006855|GO:0015238 BED32_13260 e1fa31d38f0d970098b9d53c55b77ac1 361 Pfam PF03916 Polysulphide reductase, NrfD 13 300 1.8E-18 T 11-10-2018 IPR005614 NrfD family BED32_05865 b871886a52095908fc0c7d25f335377c 325 Gene3D G3DSA:3.40.190.10 125 267 1.6E-104 T 11-10-2018 BED32_05865 b871886a52095908fc0c7d25f335377c 325 Pfam PF12849 PBP superfamily domain 37 294 7.0E-32 T 11-10-2018 IPR024370 PBP domain BED32_05865 b871886a52095908fc0c7d25f335377c 325 Gene3D G3DSA:3.40.190.10 40 311 1.6E-104 T 11-10-2018 BED32_05865 b871886a52095908fc0c7d25f335377c 325 SUPERFAMILY SSF53850 39 319 2.47E-67 T 11-10-2018 BED32_05865 b871886a52095908fc0c7d25f335377c 325 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 30 309 3.0E-69 T 11-10-2018 IPR011862 Phosphate binding protein GO:0042301 BED32_03210 b1d01f25a04c9640e428398cb3710899 101 Pfam PF05957 Bacterial protein of unknown function (DUF883) 9 101 3.2E-32 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 BED32_03210 b1d01f25a04c9640e428398cb3710899 101 Gene3D G3DSA:1.20.120.20 3 78 2.4E-5 T 11-10-2018 BED32_11845 98b06be7e1f1c46d2c8842364d1c7304 688 Pfam PF02554 Carbon starvation protein CstA 32 408 8.1E-168 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 BED32_11845 98b06be7e1f1c46d2c8842364d1c7304 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 463 591 1.8E-32 T 11-10-2018 IPR025299 CstA, C-terminal domain BED32_13575 4aa442469db772e8b4421601ac30de3a 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 34 182 6.4E-61 T 11-10-2018 IPR010275 Protein of unknown function DUF882 BED32_13575 4aa442469db772e8b4421601ac30de3a 182 SUPERFAMILY SSF55166 66 182 1.94E-32 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_13575 4aa442469db772e8b4421601ac30de3a 182 Gene3D G3DSA:3.30.1380.10 61 182 1.7E-10 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 BED32_17295 c774446d2c4726165da495e40c5c5844 120 Pfam PF01381 Helix-turn-helix 65 114 3.4E-7 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_17295 c774446d2c4726165da495e40c5c5844 120 SMART SM00530 63 118 2.7E-4 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 BED32_17295 c774446d2c4726165da495e40c5c5844 120 Gene3D G3DSA:1.10.260.40 64 119 9.7E-11 T 11-10-2018 BED32_17295 c774446d2c4726165da495e40c5c5844 120 SUPERFAMILY SSF47413 63 116 1.27E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_07985 36741a7abf67dcb84b036ddcc2c55efb 270 Pfam PF08241 Methyltransferase domain 66 156 2.2E-23 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BED32_07985 36741a7abf67dcb84b036ddcc2c55efb 270 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 31 269 2.9E-64 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BED32_07985 36741a7abf67dcb84b036ddcc2c55efb 270 Gene3D G3DSA:3.40.50.150 30 223 4.2E-35 T 11-10-2018 BED32_07985 36741a7abf67dcb84b036ddcc2c55efb 270 SUPERFAMILY SSF53335 29 261 9.91E-38 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_07985 36741a7abf67dcb84b036ddcc2c55efb 270 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 23 269 29.036 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 BED32_03755 4f97abb07bcd4897514d1abed0ffc7b3 272 Gene3D G3DSA:3.40.50.300 14 266 4.0E-65 T 11-10-2018 BED32_03755 4f97abb07bcd4897514d1abed0ffc7b3 272 SUPERFAMILY SSF52540 13 239 5.22E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_03755 4f97abb07bcd4897514d1abed0ffc7b3 272 Pfam PF00005 ABC transporter 30 177 2.1E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_03755 4f97abb07bcd4897514d1abed0ffc7b3 272 SMART SM00382 38 227 5.6E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_03755 4f97abb07bcd4897514d1abed0ffc7b3 272 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_12950 ffa9244ce79c2f8e320a22261983aa0b 319 Gene3D G3DSA:2.40.128.140 23 319 2.7E-94 T 11-10-2018 IPR037107 Putative outer membrane protein superfamily BED32_12950 ffa9244ce79c2f8e320a22261983aa0b 319 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 54 318 2.2E-36 T 11-10-2018 IPR018707 Protein of unknown function DUF2219 BED32_05675 766f74d1cfccf3a833bec21a467e2190 209 PIRSF PIRSF006102 3 209 6.9E-72 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_05675 766f74d1cfccf3a833bec21a467e2190 209 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 5.1E-63 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 BED32_05675 766f74d1cfccf3a833bec21a467e2190 209 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 4 206 1.0E-105 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 BED32_05675 766f74d1cfccf3a833bec21a467e2190 209 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.959 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 BED32_19700 201f1d5291578213b08bc51efbe574ae 103 Pfam PF04341 Protein of unknown function, DUF485 11 98 4.8E-34 T 11-10-2018 IPR007436 Protein of unknown function DUF485 BED32_12510 8c4adadd17f2e9ed6f433955a1780663 452 Pfam PF03390 2-hydroxycarboxylate transporter family 37 445 6.2E-144 T 11-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 BED32_12510 8c4adadd17f2e9ed6f433955a1780663 452 PIRSF PIRSF005348 14 452 1.9E-155 T 11-10-2018 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 BED32_09950 edffdf644328938270ec6a51ee9f0dfc 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 7.5E-101 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_09950 edffdf644328938270ec6a51ee9f0dfc 335 PIRSF PIRSF000267 2 335 3.9E-90 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_09950 edffdf644328938270ec6a51ee9f0dfc 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 6.6E-44 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 BED32_05835 7d9265280f522a566dd8d47f926fbe38 303 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 302 42.078 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 BED32_05835 7d9265280f522a566dd8d47f926fbe38 303 Pfam PF04381 Putative exonuclease, RdgC 2 300 1.1E-129 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 BED32_08850 ad97ddc4049bc095807437eb5ec134dc 116 Pfam PF00936 BMC domain 45 109 6.3E-13 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08850 ad97ddc4049bc095807437eb5ec134dc 116 PIRSF PIRSF012296 1 116 9.4E-57 T 11-10-2018 IPR009307 Ethanolamine utilisation EutS GO:0031469 BED32_08850 ad97ddc4049bc095807437eb5ec134dc 116 SMART SM00877 44 116 3.0E-17 T 11-10-2018 IPR000249 Microcompartment protein, bacteria BED32_08850 ad97ddc4049bc095807437eb5ec134dc 116 SUPERFAMILY SSF143414 44 108 3.53E-14 T 11-10-2018 IPR037233 CcmK-like superfamily BED32_08850 ad97ddc4049bc095807437eb5ec134dc 116 Gene3D G3DSA:3.30.70.1710 1 116 2.1E-52 T 11-10-2018 BED32_15080 237100f2df7988db36b52a41b1102e79 219 SUPERFAMILY SSF46785 61 189 4.18E-24 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_15080 237100f2df7988db36b52a41b1102e79 219 Pfam PF03551 Transcriptional regulator PadR-like family 66 135 8.5E-20 T 11-10-2018 IPR005149 Transcription regulator PadR, N-terminal BED32_15080 237100f2df7988db36b52a41b1102e79 219 Gene3D G3DSA:1.10.10.10 47 160 9.5E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_20450 236c1da1a14006ecb7c6aa3aaed287eb 245 SUPERFAMILY SSF55729 44 238 5.32E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_20450 236c1da1a14006ecb7c6aa3aaed287eb 245 TIGRFAM TIGR02382 wecD_rffC: TDP-D-fucosamine acetyltransferase 44 244 3.2E-98 T 11-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 BED32_20450 236c1da1a14006ecb7c6aa3aaed287eb 245 Pfam PF00583 Acetyltransferase (GNAT) family 150 230 7.0E-16 T 11-10-2018 IPR000182 GNAT domain BED32_20450 236c1da1a14006ecb7c6aa3aaed287eb 245 Gene3D G3DSA:3.40.630.30 1 244 8.0E-70 T 11-10-2018 BED32_20450 236c1da1a14006ecb7c6aa3aaed287eb 245 Hamap MF_02027 dTDP-fucosamine acetyltransferase [wecD]. 44 244 45.702 T 11-10-2018 IPR012752 dTDP-fucosamine acetyltransferase WecD GO:0008080|GO:0009246 MetaCyc: PWY-7315 BED32_12760 1d5021f260a783fd26ca8ae6972b72e1 38 Pfam PF10736 Protein of unknown function (DUF2627) 1 38 3.9E-29 T 11-10-2018 IPR019672 Protein of unknown function DUF2627 BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 PRINTS PR00682 Isopenicillin N synthase signature 210 231 2.2E-11 T 11-10-2018 BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 PRINTS PR00682 Isopenicillin N synthase signature 39 56 2.2E-11 T 11-10-2018 BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 PRINTS PR00682 Isopenicillin N synthase signature 246 272 2.2E-11 T 11-10-2018 BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 SUPERFAMILY SSF51197 10 297 2.4E-85 T 11-10-2018 BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 Pfam PF14226 non-haem dioxygenase in morphine synthesis N-terminal 17 140 2.0E-37 T 11-10-2018 IPR026992 Non-haem dioxygenase N-terminal domain BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 Gene3D G3DSA:2.60.120.330 7 312 3.3E-86 T 11-10-2018 IPR027443 Isopenicillin N synthase-like BED32_14000 6965d8b44f7c4a6bfcdfe302f20a7853 358 Pfam PF03171 2OG-Fe(II) oxygenase superfamily 189 285 9.3E-18 T 11-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 BED32_18735 0420923b00c50b3e5783492842c908b6 158 TIGRFAM TIGR03293 PhnG_redo: phosphonate C-P lyase system protein PhnG 6 157 5.5E-50 T 11-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_18735 0420923b00c50b3e5783492842c908b6 158 Pfam PF06754 Phosphonate metabolism protein PhnG 7 156 1.8E-49 T 11-10-2018 IPR009609 Phosphonate metabolism PhnG GO:0015716|GO:0019634 KEGG: 00440+2.7.8.37|MetaCyc: PWY-7399|MetaCyc: PWY-7805|MetaCyc: PWY-7807 BED32_03585 e84e8c12bf3df058ab60cef9e59ead26 319 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 86 297 8.8E-95 T 11-10-2018 IPR014164 TonB-system energizer ExbB type-1 GO:0016020|GO:0022857|GO:0055085 BED32_03585 e84e8c12bf3df058ab60cef9e59ead26 319 Pfam PF01618 MotA/TolQ/ExbB proton channel family 169 281 6.4E-35 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel BED32_09665 b33887dd7fc2c7d5976e3738d37b73ee 145 TIGRFAM TIGR01635 tail_comp_S: phage virion morphogenesis protein 3 137 8.6E-35 T 11-10-2018 IPR006522 Phage virion morphogensis protein BED32_09665 b33887dd7fc2c7d5976e3738d37b73ee 145 Pfam PF05069 Phage virion morphogenesis family 3 142 1.2E-36 T 11-10-2018 IPR006522 Phage virion morphogensis protein BED32_10910 c0483dbab3d98091833b503035acc15b 478 Pfam PF05598 Transposase domain (DUF772) 52 127 3.7E-23 T 11-10-2018 IPR008490 Transposase InsH, N-terminal BED32_10910 c0483dbab3d98091833b503035acc15b 478 Pfam PF13751 Transposase DDE domain 328 446 1.3E-26 T 11-10-2018 IPR025668 Transposase DDE domain BED32_00130 146d2f97e503a84d48bf361fbd14f46a 84 Pfam PF10723 Replication regulatory protein RepB 1 80 3.8E-44 T 11-10-2018 IPR019661 Replication regulatory protein RepA2 GO:0006276 BED32_06820 c6bf3ce563b4b2f0d32a2961ded070df 366 Pfam PF01757 Acyltransferase family 8 320 6.5E-22 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BED32_04410 00b39777c8866f25ca7230f79f8ef673 99 Pfam PF04143 Sulphur transport 9 87 2.0E-10 T 11-10-2018 IPR007272 Sulphur transport domain BED32_12900 23125077449fde4682d210c76b706916 118 SUPERFAMILY SSF51306 10 113 1.55E-25 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily BED32_12900 23125077449fde4682d210c76b706916 118 Pfam PF00717 Peptidase S24-like 35 86 9.5E-9 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C BED32_12900 23125077449fde4682d210c76b706916 118 Gene3D G3DSA:2.10.109.10 4 117 8.1E-36 T 11-10-2018 BED32_12900 23125077449fde4682d210c76b706916 118 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 41 52 3.2E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_12900 23125077449fde4682d210c76b706916 118 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 30 40 3.2E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_12900 23125077449fde4682d210c76b706916 118 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 69 81 3.2E-5 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 BED32_04610 b6703e252d886583c6658620ad2bbed9 107 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 34.552 T 11-10-2018 IPR023081 Cell division protein FtsB BED32_04610 b6703e252d886583c6658620ad2bbed9 107 Gene3D G3DSA:1.20.5.400 21 63 3.6E-14 T 11-10-2018 BED32_04610 b6703e252d886583c6658620ad2bbed9 107 Pfam PF04977 Septum formation initiator 11 89 1.7E-27 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC BED32_06345 2ea1855fe06a234de4961454b72afee9 341 Pfam PF00953 Glycosyl transferase family 4 77 231 8.6E-31 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BED32_20605 f11618f94e94c2ccba4152f6f71fad84 331 Gene3D G3DSA:3.40.50.2300 129 317 3.6E-123 T 11-10-2018 BED32_20605 f11618f94e94c2ccba4152f6f71fad84 331 SUPERFAMILY SSF53822 24 317 2.72E-71 T 11-10-2018 IPR028082 Periplasmic binding protein-like I BED32_20605 f11618f94e94c2ccba4152f6f71fad84 331 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 330 4.8E-164 T 11-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 BED32_20605 f11618f94e94c2ccba4152f6f71fad84 331 Pfam PF13407 Periplasmic binding protein domain 38 286 6.0E-61 T 11-10-2018 IPR025997 Periplasmic binding protein BED32_20605 f11618f94e94c2ccba4152f6f71fad84 331 Gene3D G3DSA:3.40.50.2300 29 305 3.6E-123 T 11-10-2018 BED32_21370 6ac02366e694173c594238b2efbfd66d 321 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 313 7.2E-51 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Pfam PF13604 AAA domain 1108 1285 2.2E-9 T 11-10-2018 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Pfam PF13604 AAA domain 499 683 7.3E-41 T 11-10-2018 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 SUPERFAMILY SSF52540 495 632 1.13E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Pfam PF08751 TrwC relaxase 12 285 9.1E-75 T 11-10-2018 IPR014862 TrwC relaxase BED32_21715 ff6782aaa891c144379801c2301e2411 1656 SUPERFAMILY SSF52540 608 944 6.37E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_21715 ff6782aaa891c144379801c2301e2411 1656 SUPERFAMILY SSF55464 1 300 4.21E-74 T 11-10-2018 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Gene3D G3DSA:2.30.30.940 820 884 2.3E-11 T 11-10-2018 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 TIGRFAM TIGR02686 relax_trwC: conjugative relaxase domain 13 290 4.4E-79 T 11-10-2018 IPR014059 Conjugative relaxase, N-terminal BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Gene3D G3DSA:3.40.50.300 885 947 2.3E-11 T 11-10-2018 BED32_21715 ff6782aaa891c144379801c2301e2411 1656 Gene3D G3DSA:3.40.50.300 466 670 3.3E-31 T 11-10-2018 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 15 512 2.2E-262 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 29 316 3.9E-72 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme BED32_00810 8d12c411a4322718f23dc521169fbf95 514 SUPERFAMILY SSF55021 420 512 1.6E-26 T 11-10-2018 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 SUPERFAMILY SSF53686 15 365 2.62E-96 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Gene3D G3DSA:3.40.1020.10 338 514 4.9E-74 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Gene3D G3DSA:3.40.50.1100 25 327 4.0E-127 T 11-10-2018 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Gene3D G3DSA:3.40.50.1100 61 157 4.0E-127 T 11-10-2018 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 329 419 1.7E-28 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 425 512 8.5E-27 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 SUPERFAMILY SSF55021 336 423 3.66E-28 T 11-10-2018 BED32_00810 8d12c411a4322718f23dc521169fbf95 514 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 53 66 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 BED32_20520 9158feaa2bb6524960ea150ef3c76093 93 Gene3D G3DSA:3.10.50.40 2 93 2.3E-37 T 11-10-2018 BED32_20520 9158feaa2bb6524960ea150ef3c76093 93 Pfam PF13616 PPIC-type PPIASE domain 15 90 1.1E-24 T 11-10-2018 BED32_20520 9158feaa2bb6524960ea150ef3c76093 93 SUPERFAMILY SSF54534 4 90 2.68E-30 T 11-10-2018 BED32_18850 b09f49c67b3952f25cd32d6ff4e91f79 166 SUPERFAMILY SSF55729 2 158 7.21E-21 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_18850 b09f49c67b3952f25cd32d6ff4e91f79 166 Pfam PF00583 Acetyltransferase (GNAT) family 42 121 1.1E-5 T 11-10-2018 IPR000182 GNAT domain BED32_18850 b09f49c67b3952f25cd32d6ff4e91f79 166 Gene3D G3DSA:3.40.630.30 1 166 2.7E-46 T 11-10-2018 BED32_20315 89fc163daadafec0a043860a2256f5e3 276 Gene3D G3DSA:3.20.20.70 1 252 2.0E-121 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 BED32_20315 89fc163daadafec0a043860a2256f5e3 276 PIRSF PIRSF034452 1 276 3.3E-163 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like BED32_20315 89fc163daadafec0a043860a2256f5e3 276 SUPERFAMILY SSF51621 3 197 2.07E-84 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 BED32_20315 89fc163daadafec0a043860a2256f5e3 276 Pfam PF09370 Phosphoenolpyruvate hydrolase-like 9 274 3.0E-133 T 11-10-2018 IPR009215 TIM-barrel domain, IGPS-like BED32_07180 e0fc30e7504028f356830ede825e0d45 121 SUPERFAMILY SSF160719 29 72 1.83E-5 T 11-10-2018 BED32_08280 3cd53ce98489c7936fa794bf7cd186a8 218 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 110 1.7E-30 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 BED32_08280 3cd53ce98489c7936fa794bf7cd186a8 218 Gene3D G3DSA:1.10.3720.10 1 216 2.1E-54 T 11-10-2018 IPR035906 MetI-like superfamily BED32_08280 3cd53ce98489c7936fa794bf7cd186a8 218 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 216 2.3E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_08280 3cd53ce98489c7936fa794bf7cd186a8 218 SUPERFAMILY SSF161098 13 201 4.58E-44 T 11-10-2018 IPR035906 MetI-like superfamily BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:3.40.50.300 617 936 4.6E-138 T 11-10-2018 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 SUPERFAMILY SSF52540 1 569 2.92E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 SUPERFAMILY SSF52540 615 911 2.66E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 ProSitePatterns PS00211 ABC transporters family signature. 830 844 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:3.30.190.20 130 244 3.5E-244 T 11-10-2018 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 940 22.94 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:1.20.1580.10 90 492 3.5E-244 T 11-10-2018 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 925 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:3.40.50.300 6 595 3.5E-244 T 11-10-2018 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:1.10.8.280 287 403 3.5E-244 T 11-10-2018 BED32_02295 14de2be7e96676668c422668f8b4fe0c 943 Gene3D G3DSA:1.20.1580.10 692 830 4.6E-138 T 11-10-2018 BED32_03590 ba22b45bf04a0c4a7bf15af7b353caa6 141 Gene3D G3DSA:3.30.420.270 63 132 3.3E-28 T 11-10-2018 BED32_03590 ba22b45bf04a0c4a7bf15af7b353caa6 141 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 133 2.5E-29 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 BED32_03590 ba22b45bf04a0c4a7bf15af7b353caa6 141 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 16 136 1.0E-64 T 11-10-2018 IPR014170 TonB system transport protein ExbD type-1 GO:0016020|GO:0055085 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 241 250 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 338 352 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 PRINTS PR00735 Glycosyl hydrolase family 8 signature 180 197 1.1E-20 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 SUPERFAMILY SSF48208 3 357 2.04E-105 T 11-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 Gene3D G3DSA:1.50.10.10 23 367 1.6E-139 T 11-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 ProSitePatterns PS00812 Glycosyl hydrolases family 8 signature. 115 133 - T 11-10-2018 IPR019834 Glycoside hydrolase, family 8, conserved site KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_01040 e8a04d9ad9572efcb5132f6fed4e4aea 375 Pfam PF01270 Glycosyl hydrolases family 8 10 353 3.4E-95 T 11-10-2018 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 BED32_08150 1531f8b2005f20e27afee735373c6685 358 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 42 351 1.8E-128 T 11-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC BED32_08150 1531f8b2005f20e27afee735373c6685 358 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 340 1.6E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_02640 d555fbe46819f74a97df162c7e73f8eb 104 Pfam PF04606 Ogr/Delta-like zinc finger 25 71 6.3E-17 T 11-10-2018 IPR007684 Zinc finger, Ogr/Delta-type BED32_14420 1b293043f5bd6a7108647981de925edd 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 11-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14420 1b293043f5bd6a7108647981de925edd 376 Pfam PF00268 Ribonucleotide reductase, small chain 33 332 4.1E-46 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 BED32_14420 1b293043f5bd6a7108647981de925edd 376 Gene3D G3DSA:1.10.620.20 2 340 1.5E-148 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 BED32_14420 1b293043f5bd6a7108647981de925edd 376 SUPERFAMILY SSF47240 3 340 3.75E-113 T 11-10-2018 IPR009078 Ferritin-like superfamily BED32_09320 d998c4d81f0eca443a45b6e425b847b9 82 Gene3D G3DSA:3.40.50.1980 2 81 1.7E-19 T 11-10-2018 BED32_09320 d998c4d81f0eca443a45b6e425b847b9 82 SUPERFAMILY SSF53807 11 71 8.24E-10 T 11-10-2018 BED32_14805 6176c08f5f13b6e9eb358ce2c105d68c 166 Gene3D G3DSA:3.40.30.10 22 157 9.0E-25 T 11-10-2018 BED32_14805 6176c08f5f13b6e9eb358ce2c105d68c 166 SUPERFAMILY SSF52833 36 157 1.56E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_14805 6176c08f5f13b6e9eb358ce2c105d68c 166 Pfam PF00578 AhpC/TSA family 38 139 1.3E-15 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 Gene3D G3DSA:2.60.40.10 28 150 2.5E-40 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 27 150 1.4E-40 T 11-10-2018 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 PRINTS PR00969 Pili chaperone signature 27 36 1.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 PRINTS PR00969 Pili chaperone signature 76 97 1.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 PRINTS PR00969 Pili chaperone signature 169 184 1.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 PRINTS PR00969 Pili chaperone signature 104 121 1.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 PRINTS PR00969 Pili chaperone signature 131 146 1.6E-28 T 11-10-2018 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 SUPERFAMILY SSF49354 22 149 4.19E-39 T 11-10-2018 IPR008962 PapD-like superfamily BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 174 236 2.0E-13 T 11-10-2018 IPR016148 Pili assembly chaperone, C-terminal BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 Gene3D G3DSA:2.60.40.10 152 244 2.2E-16 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_09345 3cb2d930c9005b3016c483be83e1c5e0 244 SUPERFAMILY SSF49584 167 241 2.49E-13 T 11-10-2018 IPR036316 Pili assembly chaperone, C-terminal domain superfamily BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.2E-22 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF52172 3 126 1.15E-41 T 11-10-2018 IPR011006 CheY-like superfamily BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00862 156 232 1.7E-23 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 SUPERFAMILY SSF46894 132 234 2.07E-26 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:3.40.50.2300 1 126 3.2E-40 T 11-10-2018 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 SMART SM00448 5 116 1.2E-44 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 Pfam PF00072 Response regulator receiver domain 7 117 1.3E-29 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 BED32_01550 8d74fe995ca49599e0d24df6a5a0e460 239 Gene3D G3DSA:1.10.10.10 130 239 1.2E-39 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04390 fddfa5232640ec1d544920e319f0689b 235 SUPERFAMILY SSF54060 25 230 1.41E-86 T 11-10-2018 BED32_04390 fddfa5232640ec1d544920e319f0689b 235 Pfam PF04231 Endonuclease I 42 229 1.0E-41 T 11-10-2018 IPR007346 Endonuclease I GO:0004518 BED32_16090 2e5e2cdd57952c27c3ff4f9bd8f96f2d 338 Pfam PF03824 High-affinity nickel-transport protein 74 324 1.5E-42 T 11-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 BED32_07070 966d1178b0d527240b0526a27b0c2abc 149 Pfam PF10045 Uncharacterized conserved protein (DUF2280) 1 103 2.0E-47 T 11-10-2018 IPR018738 Protein of unknown function DUF2280 BED32_07410 47a1da0169174cda6539143ef78affed 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 11 366 29.202 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_07410 47a1da0169174cda6539143ef78affed 370 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 321 345 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_07410 47a1da0169174cda6539143ef78affed 370 Pfam PF01098 Cell cycle protein 21 364 1.5E-122 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_07410 47a1da0169174cda6539143ef78affed 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 17 364 1.2E-136 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 BED32_12210 ef56b372b0652bd79f9b608685a79544 183 PIRSF PIRSF000232 1 183 1.6E-62 T 11-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like BED32_12210 ef56b372b0652bd79f9b608685a79544 183 SUPERFAMILY SSF55469 1 182 1.28E-38 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BED32_12210 ef56b372b0652bd79f9b608685a79544 183 Pfam PF00881 Nitroreductase family 8 161 6.5E-21 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 BED32_12210 ef56b372b0652bd79f9b608685a79544 183 Gene3D G3DSA:3.40.109.10 1 183 3.0E-42 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 BED32_19065 7d38206f9287b25ac9b17ec19e539a06 175 SUPERFAMILY SSF50324 3 175 4.45E-67 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BED32_19065 7d38206f9287b25ac9b17ec19e539a06 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 2.6E-55 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BED32_19065 7d38206f9287b25ac9b17ec19e539a06 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.024 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BED32_19065 7d38206f9287b25ac9b17ec19e539a06 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BED32_19065 7d38206f9287b25ac9b17ec19e539a06 175 Gene3D G3DSA:3.90.80.10 2 175 1.4E-70 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 BED32_22000 7c6f6eaa9129f363ff4eb72e9de874d2 215 Pfam PF13936 Helix-turn-helix domain 3 45 2.9E-13 T 11-10-2018 IPR025246 Transposase IS30-like HTH domain BED32_22000 7c6f6eaa9129f363ff4eb72e9de874d2 215 SUPERFAMILY SSF46689 2 122 3.4E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_20595 add3e1702cc7e8bb798ddd82e9265b77 394 Pfam PF02653 Branched-chain amino acid transport system / permease component 57 384 1.0E-48 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_21075 4d27dc8dd02cfb1c8fedc0108a42b2de 61 Pfam PF13973 Domain of unknown function (DUF4222) 8 56 1.3E-19 T 11-10-2018 IPR025317 Protein of unknown function DUF4222 BED32_01055 3631a34a4baf008bb20a72ab0b48f626 498 Gene3D G3DSA:3.20.20.450 245 496 3.1E-83 T 11-10-2018 IPR035919 EAL domain superfamily BED32_01055 3631a34a4baf008bb20a72ab0b48f626 498 Pfam PF00563 EAL domain 250 484 8.1E-63 T 11-10-2018 IPR001633 EAL domain BED32_01055 3631a34a4baf008bb20a72ab0b48f626 498 Pfam PF17154 Gammaproteobacterial periplasmic sensor domain 25 145 3.0E-57 T 11-10-2018 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 BED32_01055 3631a34a4baf008bb20a72ab0b48f626 498 SMART SM00052 244 489 2.4E-96 T 11-10-2018 IPR001633 EAL domain BED32_01055 3631a34a4baf008bb20a72ab0b48f626 498 SUPERFAMILY SSF141868 249 491 3.01E-76 T 11-10-2018 IPR035919 EAL domain superfamily BED32_06585 93405ec8c9a0f953cc1b3f4bf833bc0e 97 Gene3D G3DSA:1.10.260.40 2 82 4.2E-36 T 11-10-2018 BED32_06585 93405ec8c9a0f953cc1b3f4bf833bc0e 97 SUPERFAMILY SSF47413 6 78 4.08E-22 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 BED32_06585 93405ec8c9a0f953cc1b3f4bf833bc0e 97 Pfam PF05269 Bacteriophage CII protein 1 90 7.0E-36 T 11-10-2018 IPR007933 Transcription activator CII GO:0003677|GO:0006355 BED32_07660 ce6ac1330d4400819b1d40532f80b5fd 34 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 13 34 3.2E-8 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 BED32_07660 ce6ac1330d4400819b1d40532f80b5fd 34 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 11 34 1.2E-9 T 11-10-2018 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 BED32_18105 de687c2063cb06daa4248471b723082e 265 Pfam PF06738 Putative threonine/serine exporter 21 259 5.4E-69 T 11-10-2018 IPR010619 Putative threonine/serine exporter BED32_21555 714ba910afbf8da2d7345174c78e302c 190 Pfam PF03358 NADPH-dependent FMN reductase 7 149 1.7E-36 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 BED32_21555 714ba910afbf8da2d7345174c78e302c 190 SUPERFAMILY SSF52218 7 180 2.35E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_21555 714ba910afbf8da2d7345174c78e302c 190 Gene3D G3DSA:3.40.50.360 3 190 4.2E-59 T 11-10-2018 IPR029039 Flavoprotein-like superfamily BED32_11465 b0472eda8bf1d81488064fac2fe09423 349 Gene3D G3DSA:3.40.50.720 5 316 1.1E-134 T 11-10-2018 BED32_11465 b0472eda8bf1d81488064fac2fe09423 349 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 134 241 6.2E-13 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 BED32_11465 b0472eda8bf1d81488064fac2fe09423 349 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 121 3.7E-22 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 BED32_11465 b0472eda8bf1d81488064fac2fe09423 349 Gene3D G3DSA:3.30.360.10 127 330 1.1E-134 T 11-10-2018 BED32_11465 b0472eda8bf1d81488064fac2fe09423 349 SUPERFAMILY SSF51735 3 198 9.35E-48 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 Pfam PF01297 Zinc-uptake complex component A periplasmic 55 318 1.2E-78 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 207 224 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 278 296 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 52 73 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 96 115 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 77 95 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 256 273 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00691 Adhesin B signature 233 251 1.2E-38 T 11-10-2018 IPR006129 Adhesin B GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 Gene3D G3DSA:3.40.50.1980 209 322 1.7E-42 T 11-10-2018 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 Gene3D G3DSA:3.40.50.1980 51 208 2.7E-53 T 11-10-2018 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 83 96 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 52 70 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 207 228 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 286 305 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 96 113 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 PRINTS PR00690 Adhesin family signature 260 278 5.0E-46 T 11-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 BED32_10595 08c7c48c755e5681a31ca584f4fd0062 322 SUPERFAMILY SSF53807 49 321 5.4E-91 T 11-10-2018 BED32_02025 763783521388112c3f1601ae680b0ed6 478 Pfam PF13751 Transposase DDE domain 328 446 1.3E-26 T 11-10-2018 IPR025668 Transposase DDE domain BED32_02025 763783521388112c3f1601ae680b0ed6 478 Pfam PF05598 Transposase domain (DUF772) 52 127 3.7E-23 T 11-10-2018 IPR008490 Transposase InsH, N-terminal BED32_16645 0a87093c1e40cabf9445a9db46996117 154 Pfam PF00075 RNase H 3 141 1.8E-53 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 BED32_16645 0a87093c1e40cabf9445a9db46996117 154 Gene3D G3DSA:3.30.420.10 1 154 1.4E-59 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 BED32_16645 0a87093c1e40cabf9445a9db46996117 154 SUPERFAMILY SSF53098 3 143 1.26E-57 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily BED32_16645 0a87093c1e40cabf9445a9db46996117 154 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 37.313 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 BED32_18245 1cc251fd406a805d274e0079a9475c57 155 Pfam PF05981 CreA protein 24 155 1.7E-58 T 11-10-2018 IPR010292 Uncharacterised protein family CreA BED32_18245 1cc251fd406a805d274e0079a9475c57 155 PIRSF PIRSF003174 1 155 2.2E-67 T 11-10-2018 IPR010292 Uncharacterised protein family CreA BED32_08450 c61ef4ed606938be66fba357740a2fe7 336 Pfam PF02653 Branched-chain amino acid transport system / permease component 41 325 8.3E-49 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 PIRSF PIRSF039085 1 241 8.0E-105 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 Pfam PF00005 ABC transporter 18 165 1.7E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 SUPERFAMILY SSF52540 1 235 5.07E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 Gene3D G3DSA:3.40.50.300 1 240 9.0E-76 T 11-10-2018 BED32_07455 7b1627387a0de4bc6b23c98dcfc6981d 241 SMART SM00382 26 213 5.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain BED32_14920 6d17ee76717d27cd72c86d85ad3fe451 176 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 174 39.647 T 11-10-2018 IPR022990 Uncharacterised protein family UPF0115 BED32_14920 6d17ee76717d27cd72c86d85ad3fe451 176 Pfam PF01713 Smr domain 98 172 1.4E-16 T 11-10-2018 IPR002625 Smr domain BED32_14920 6d17ee76717d27cd72c86d85ad3fe451 176 SUPERFAMILY SSF160443 96 171 3.79E-8 T 11-10-2018 IPR036063 Smr domain superfamily BED32_14920 6d17ee76717d27cd72c86d85ad3fe451 176 SMART SM00463 95 173 1.7E-16 T 11-10-2018 IPR002625 Smr domain BED32_14920 6d17ee76717d27cd72c86d85ad3fe451 176 Gene3D G3DSA:3.30.1370.110 50 176 1.6E-28 T 11-10-2018 BED32_05115 2bb57d644104de157c5867579d9ea25c 261 SMART SM01144 54 246 2.4E-74 T 11-10-2018 IPR005636 DTW BED32_05115 2bb57d644104de157c5867579d9ea25c 261 Pfam PF03942 DTW domain 57 241 1.9E-43 T 11-10-2018 IPR005636 DTW BED32_01375 fdf884286a70699f5ff1bb9576be7a1d 197 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 191 9.6E-31 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_01375 fdf884286a70699f5ff1bb9576be7a1d 197 Pfam PF01914 MarC family integral membrane protein 2 193 2.5E-58 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_10420 752f7ceb36c10b08f3f31c777a296487 876 Pfam PF02470 MlaD protein 747 806 3.0E-9 T 11-10-2018 IPR003399 Mce/MlaD BED32_10420 752f7ceb36c10b08f3f31c777a296487 876 Pfam PF02470 MlaD protein 46 137 1.4E-17 T 11-10-2018 IPR003399 Mce/MlaD BED32_10420 752f7ceb36c10b08f3f31c777a296487 876 Pfam PF02470 MlaD protein 634 722 1.1E-10 T 11-10-2018 IPR003399 Mce/MlaD BED32_10420 752f7ceb36c10b08f3f31c777a296487 876 Pfam PF02470 MlaD protein 280 348 1.5E-6 T 11-10-2018 IPR003399 Mce/MlaD BED32_10420 752f7ceb36c10b08f3f31c777a296487 876 Pfam PF02470 MlaD protein 163 220 6.4E-6 T 11-10-2018 IPR003399 Mce/MlaD BED32_17425 58c969193bf86a0f4c98e357ee8157b7 473 PIRSF PIRSF004548 1 454 1.7E-184 T 11-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD BED32_17425 58c969193bf86a0f4c98e357ee8157b7 473 Pfam PF06123 Inner membrane protein CreD 6 428 4.2E-150 T 11-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD BED32_03620 ceef3bed3e29e08168e38feb8daf3f75 293 Pfam PF00482 Type II secretion system (T2SS), protein F 129 250 5.0E-16 T 11-10-2018 IPR018076 Type II secretion system F domain BED32_00425 9ab6dbd9b0c80b60b8801df43ebf6f06 109 Gene3D G3DSA:3.30.1460.10 1 109 5.1E-46 T 11-10-2018 BED32_00425 9ab6dbd9b0c80b60b8801df43ebf6f06 109 SUPERFAMILY SSF69635 1 108 2.2E-37 T 11-10-2018 BED32_00425 9ab6dbd9b0c80b60b8801df43ebf6f06 109 TIGRFAM TIGR02503 type_III_SycN: type III secretion chaperone SycN 1 108 1.1E-42 T 11-10-2018 IPR012673 Type III secretion system chaperone SycN GO:0009306 BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 SUPERFAMILY SSF46785 4 72 3.41E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.4E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 Gene3D G3DSA:1.10.10.10 1 73 5.5E-30 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.5E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.5E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_11390 de6b6067ba5190c5aa8a4c196388dc06 73 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.5E-11 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.0E-28 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 PIRSF PIRSF004669 1 88 6.1E-27 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 5 84 5.6E-35 T 11-10-2018 IPR006306 Type III secretion protein HrpO GO:0009306|GO:0016021 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 1.9E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 1.9E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_00385 c3ba17cf5c8595e3367a0c80e4f32f96 88 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 1.9E-26 T 11-10-2018 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 BED32_13215 d8ac288a57a66b2450756b9e0e8e1599 95 SUPERFAMILY SSF54909 3 89 1.24E-27 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_13215 d8ac288a57a66b2450756b9e0e8e1599 95 Gene3D G3DSA:3.30.70.100 1 95 1.1E-28 T 11-10-2018 BED32_13215 d8ac288a57a66b2450756b9e0e8e1599 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 77 2.1E-18 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain BED32_11005 ba8fb7a8673afeaf6d0ca31c262dc502 196 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 1.2E-49 T 11-10-2018 IPR009698 Protein of unknown function DUF1282 BED32_04525 ebf09cba2ae473ec6c6adcfaed71f1e5 175 Gene3D G3DSA:2.60.40.200 21 175 3.7E-55 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BED32_04525 ebf09cba2ae473ec6c6adcfaed71f1e5 175 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 66 76 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BED32_04525 ebf09cba2ae473ec6c6adcfaed71f1e5 175 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 34 174 1.2E-31 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BED32_04525 ebf09cba2ae473ec6c6adcfaed71f1e5 175 SUPERFAMILY SSF49329 24 175 6.81E-50 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BED32_04525 ebf09cba2ae473ec6c6adcfaed71f1e5 175 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 163 174 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 BED32_09310 001527af2bf41b161a0a0217e5d4e43c 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 4.0E-58 T 11-10-2018 IPR018636 Protein of unknown function DUF2058 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 110 127 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 154 2.9E-65 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 SUPERFAMILY SSF51230 79 154 3.27E-26 T 11-10-2018 IPR011053 Single hybrid motif BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 Pfam PF00364 Biotin-requiring enzyme 81 153 6.2E-25 T 11-10-2018 IPR000089 Biotin/lipoyl attachment BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 Gene3D G3DSA:2.40.50.100 75 154 1.2E-31 T 11-10-2018 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 96 1.9E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 114 1.9E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BED32_02435 29d68fe5269dab4b1cc48d1397350813 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 128 1.9E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 BED32_10510 db61ae4e91665ce403b0ea43c6d3f721 296 Gene3D G3DSA:1.10.3720.10 46 284 7.3E-67 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10510 db61ae4e91665ce403b0ea43c6d3f721 296 SUPERFAMILY SSF161098 50 273 1.31E-58 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10510 db61ae4e91665ce403b0ea43c6d3f721 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 274 7.8E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_10510 db61ae4e91665ce403b0ea43c6d3f721 296 SUPERFAMILY SSF160964 4 42 1.23E-5 T 11-10-2018 BED32_11275 c722333458807d7024e37b993fc0aba2 318 Gene3D G3DSA:3.40.50.12370 1 315 2.0E-132 T 11-10-2018 BED32_11275 c722333458807d7024e37b993fc0aba2 318 SUPERFAMILY SSF52402 4 153 7.53E-29 T 11-10-2018 BED32_11275 c722333458807d7024e37b993fc0aba2 318 Pfam PF00582 Universal stress protein family 182 300 1.1E-11 T 11-10-2018 IPR006016 UspA BED32_11275 c722333458807d7024e37b993fc0aba2 318 Pfam PF00582 Universal stress protein family 4 146 1.7E-20 T 11-10-2018 IPR006016 UspA BED32_11275 c722333458807d7024e37b993fc0aba2 318 SUPERFAMILY SSF52402 156 307 7.37E-24 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 Gene3D G3DSA:3.30.230.10 323 563 1.5E-96 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 433 533 2.0E-10 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 Pfam PF13654 AAA domain 132 321 3.2E-21 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 Gene3D G3DSA:3.40.50.300 117 235 1.2E-13 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 460 479 1.0E-10 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 490 508 1.0E-10 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 347 363 1.0E-10 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 430 449 1.0E-10 T 11-10-2018 BED32_13480 b4e5961ec3e468fb4d43cb995a6092e0 583 SUPERFAMILY SSF54211 347 538 1.1E-35 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold BED32_09275 969fa995fcf85c7602d96f5050f75538 168 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 153 2.5E-23 T 11-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ BED32_12875 e08c1219cd0e7901d472fb89787709bd 94 Pfam PF03795 YCII-related domain 1 79 8.9E-10 T 11-10-2018 IPR005545 YCII-related BED32_12875 e08c1219cd0e7901d472fb89787709bd 94 SUPERFAMILY SSF54909 1 81 2.2E-13 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel BED32_15700 fb90cacb60e4fcef468dd9cc1fe9f7d1 286 ProDom PD035357 TRANSFERASE 2.1.1.- LYSINE METHYLTRANSFERASE N-METHYLTRANSFERASE FLAGELLUM LYSINE-N-METHYLASE BIOSYNTHETIC FLAGELLIN N-METHYLATION 134 285 9.0E-45 T 11-10-2018 IPR020193 Flagellin lysine-N-methylase, C-terminal BED32_21140 0428aa47b669cbd5a577262b27e5278d 286 Pfam PF00378 Enoyl-CoA hydratase/isomerase 69 205 1.5E-15 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 BED32_21140 0428aa47b669cbd5a577262b27e5278d 286 Gene3D G3DSA:3.90.226.10 1 224 5.3E-80 T 11-10-2018 BED32_21140 0428aa47b669cbd5a577262b27e5278d 286 SUPERFAMILY SSF52096 25 253 2.09E-31 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily BED32_18015 1650348bdb6e133704a10441cb66112c 177 Pfam PF13988 Protein of unknown function (DUF4225) 1 147 1.6E-43 T 11-10-2018 IPR025320 Protein of unknown function DUF4225 BED32_19125 ef89f7604abf8da4ca6768334346316a 253 Pfam PF04225 Opacity-associated protein A LysM-like domain 168 253 3.0E-37 T 11-10-2018 IPR007340 Opacity-associated protein A BED32_19125 ef89f7604abf8da4ca6768334346316a 253 Gene3D G3DSA:3.10.450.350 159 252 8.0E-13 T 11-10-2018 BED32_19125 ef89f7604abf8da4ca6768334346316a 253 Pfam PF08525 Opacity-associated protein A N-terminal motif 94 120 6.3E-8 T 11-10-2018 IPR013731 Opacity-associated protein A, N-terminal BED32_04795 d60c32f4ee04057ed0fb223a9cec9c20 265 Pfam PF03609 PTS system sorbose-specific iic component 5 237 3.8E-73 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BED32_04795 d60c32f4ee04057ed0fb223a9cec9c20 265 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 265 4.5E-121 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 BED32_13635 babf4372491dc6274ffd1eb24a1b1a5e 468 Gene3D G3DSA:3.10.180.80 4 451 5.1E-188 T 11-10-2018 BED32_13635 babf4372491dc6274ffd1eb24a1b1a5e 468 Pfam PF07063 Domain of unknown function (DUF1338) 12 414 1.9E-116 T 11-10-2018 IPR009770 Domain of unknown function DUF1338 BED32_13635 babf4372491dc6274ffd1eb24a1b1a5e 468 SMART SM01150 13 414 1.1E-222 T 11-10-2018 IPR009770 Domain of unknown function DUF1338 BED32_17475 3161e15f324ea7703325789f309e0b5e 145 Pfam PF13924 Lipocalin-like domain 7 143 8.1E-43 T 11-10-2018 IPR024311 Lipocalin-like domain BED32_14350 898d9f066194c971f80781f23e2d6ded 508 SUPERFAMILY SSF103473 8 448 1.96E-29 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_14350 898d9f066194c971f80781f23e2d6ded 508 Gene3D G3DSA:1.20.1250.20 3 440 5.7E-14 T 11-10-2018 BED32_14350 898d9f066194c971f80781f23e2d6ded 508 Pfam PF13347 MFS/sugar transport protein 13 444 1.9E-48 T 11-10-2018 BED32_05610 45afeab73962410b2b5a9145a190a090 180 Pfam PF03079 ARD/ARD' family 5 165 5.2E-33 T 11-10-2018 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|Reactome: R-HSA-1237112 BED32_05610 45afeab73962410b2b5a9145a190a090 180 Hamap MF_01682 Acireductone dioxygenase [mtnD]. 1 172 37.788 T 11-10-2018 IPR023956 Acireductone dioxygenase ARD, bacteria GO:0005506|GO:0010308|GO:0010309|GO:0016151|GO:0019284|GO:0055114 KEGG: 00270+1.13.11.54+1.13.11.53|MetaCyc: PWY-4361|MetaCyc: PWY-5389 BED32_05610 45afeab73962410b2b5a9145a190a090 180 SUPERFAMILY SSF51182 1 179 3.43E-42 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily BED32_05610 45afeab73962410b2b5a9145a190a090 180 Gene3D G3DSA:2.60.120.10 2 157 3.8E-55 T 11-10-2018 IPR014710 RmlC-like jelly roll fold BED32_07040 9a75418f901b9d1d1de7024695f600de 147 Pfam PF00959 Phage lysozyme 35 139 9.2E-23 T 11-10-2018 IPR002196 Glycoside hydrolase, family 24 GO:0003796|GO:0009253|GO:0016998 BED32_07040 9a75418f901b9d1d1de7024695f600de 147 SUPERFAMILY SSF53955 3 146 7.16E-53 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily BED32_07040 9a75418f901b9d1d1de7024695f600de 147 Gene3D G3DSA:1.10.530.40 5 147 7.8E-57 T 11-10-2018 BED32_18365 b9af85601622cf83228253d151855768 417 SUPERFAMILY SSF52151 23 294 4.45E-45 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase BED32_18365 b9af85601622cf83228253d151855768 417 Pfam PF01734 Patatin-like phospholipase 28 196 2.2E-20 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 BED32_18365 b9af85601622cf83228253d151855768 417 Gene3D G3DSA:3.40.1090.10 111 256 1.2E-6 T 11-10-2018 BED32_18365 b9af85601622cf83228253d151855768 417 Gene3D G3DSA:3.40.1090.10 17 109 2.6E-11 T 11-10-2018 BED32_15005 8243421dfc7a4541e993fc0a02c88c20 303 Gene3D G3DSA:1.20.1080.10 54 281 1.2E-36 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 BED32_15005 8243421dfc7a4541e993fc0a02c88c20 303 Pfam PF01226 Formate/nitrite transporter 42 276 1.4E-41 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 BED32_17440 9176c27db227f94dcb81174436600eb4 134 Pfam PF07254 Membrane-bound toxin component of toxin-antitoxin system 1 123 6.5E-51 T 11-10-2018 IPR009883 Inner membrane protein YgfX BED32_17440 9176c27db227f94dcb81174436600eb4 134 ProDom PD083358 MEMBRANE YGFX INNER SIMILAR ECS3768 Y3281 ESCHERICHIA TRANSMEMBRANE YPO0896A STY3202 12 123 4.0E-36 T 11-10-2018 IPR009883 Inner membrane protein YgfX BED32_17440 9176c27db227f94dcb81174436600eb4 134 PIRSF PIRSF020653 1 132 2.8E-63 T 11-10-2018 IPR009883 Inner membrane protein YgfX BED32_04690 7a5c9fd33d12644558b421d7a15ecc6a 164 Pfam PF00419 Fimbrial protein 29 164 6.7E-18 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_04690 7a5c9fd33d12644558b421d7a15ecc6a 164 Gene3D G3DSA:2.60.40.1090 40 164 6.7E-33 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_04690 7a5c9fd33d12644558b421d7a15ecc6a 164 SUPERFAMILY SSF49401 37 164 1.64E-20 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_06105 4697689b20cfadb2401a0aa478814df8 140 Gene3D G3DSA:1.10.150.280 67 139 1.4E-19 T 11-10-2018 BED32_06105 4697689b20cfadb2401a0aa478814df8 140 SMART SM00278 88 107 0.34 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_06105 4697689b20cfadb2401a0aa478814df8 140 SMART SM00278 118 137 130.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 BED32_06105 4697689b20cfadb2401a0aa478814df8 140 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 75 138 7.0E-26 T 11-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain BED32_06105 4697689b20cfadb2401a0aa478814df8 140 Pfam PF12836 Helix-hairpin-helix motif 76 139 2.7E-21 T 11-10-2018 BED32_06105 4697689b20cfadb2401a0aa478814df8 140 SUPERFAMILY SSF47781 74 137 1.67E-24 T 11-10-2018 IPR010994 RuvA domain 2-like BED32_01955 9c9c08750d71fedab94e7b0fcd94eebe 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 1.0E-43 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 BED32_01955 9c9c08750d71fedab94e7b0fcd94eebe 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 26.133 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_01955 9c9c08750d71fedab94e7b0fcd94eebe 117 Gene3D G3DSA:3.30.420.100 1 117 3.0E-46 T 11-10-2018 BED32_01955 9c9c08750d71fedab94e7b0fcd94eebe 117 SUPERFAMILY SSF53137 3 115 4.14E-53 T 11-10-2018 BED32_01955 9c9c08750d71fedab94e7b0fcd94eebe 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 6.5E-46 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 Pfam PF00909 Ammonium Transporter Family 34 427 1.2E-127 T 11-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 PRINTS PR00342 Rhesus blood group protein signature 253 275 7.2E-5 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 PRINTS PR00342 Rhesus blood group protein signature 222 240 7.2E-5 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 PRINTS PR00342 Rhesus blood group protein signature 127 143 7.2E-5 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 PRINTS PR00342 Rhesus blood group protein signature 308 326 7.2E-5 T 11-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 Gene3D G3DSA:1.10.3430.10 24 408 2.0E-146 T 11-10-2018 IPR029020 Ammonium/urea transporter BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 SUPERFAMILY SSF111352 28 408 1.83E-128 T 11-10-2018 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 TIGRFAM TIGR00836 amt: ammonium transporter 32 427 2.4E-137 T 11-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 BED32_06155 3f01c8940262d2eb50adcc3e394308ce 429 ProSitePatterns PS01219 Ammonium transporters signature. 183 208 - T 11-10-2018 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 PIRSF PIRSF004486 8 319 6.0E-100 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 14 318 38.053 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 Gene3D G3DSA:3.40.50.150 17 317 4.8E-106 T 11-10-2018 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 Gene3D G3DSA:1.10.150.170 119 221 4.8E-106 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 Pfam PF01795 MraW methylase family 12 317 6.2E-115 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 SUPERFAMILY SSF81799 121 220 2.88E-34 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 SUPERFAMILY SSF53335 14 318 1.38E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_17920 26b63516e6532bd9c2ae6c78cacdbc6c 320 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 10 317 9.3E-125 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 BED32_16425 95487d9b7cb938db851b235e7d4a5935 344 Pfam PF00248 Aldo/keto reductase family 28 330 1.5E-74 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_16425 95487d9b7cb938db851b235e7d4a5935 344 Gene3D G3DSA:3.20.20.100 15 344 6.8E-123 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_16425 95487d9b7cb938db851b235e7d4a5935 344 SUPERFAMILY SSF51430 13 330 3.93E-87 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_13060 26b7fc03cb3498a3b468c8748766e0e3 175 Pfam PF05433 Glycine zipper 2TM domain 69 109 2.4E-10 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BED32_15795 c5069b8a3049cacdf9553662f3dd6ae8 182 TIGRFAM TIGR00821 EII-GUT: PTS system, glucitol/sorbitol-specific, IIC component 1 180 1.1E-107 T 11-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 BED32_15795 c5069b8a3049cacdf9553662f3dd6ae8 182 Pfam PF03608 PTS system enzyme II sorbitol-specific factor 5 170 8.7E-77 T 11-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 BED32_15795 c5069b8a3049cacdf9553662f3dd6ae8 182 PIRSF PIRSF038321 2 182 6.3E-88 T 11-10-2018 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor GO:0009401|GO:0016021 BED32_07965 6341263626cc4433f93cf2f23e1a4c7f 333 SUPERFAMILY SSF50974 4 290 9.68E-53 T 11-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 BED32_07965 6341263626cc4433f93cf2f23e1a4c7f 333 Gene3D G3DSA:2.130.10.10 1 332 2.9E-120 T 11-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 BED32_07965 6341263626cc4433f93cf2f23e1a4c7f 333 Pfam PF10282 Lactonase, 7-bladed beta-propeller 6 327 2.5E-93 T 11-10-2018 IPR019405 Lactonase, 7-bladed beta propeller BED32_07965 6341263626cc4433f93cf2f23e1a4c7f 333 Hamap MF_01605 6-phosphogluconolactonase [pgl]. 1 331 57.789 T 11-10-2018 IPR022528 6-phosphogluconolactonase, YbhE-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 BED32_16825 94cc86f6fd24f6e3e50a5c9b84fd3fb1 394 Pfam PF02684 Lipid-A-disaccharide synthetase 20 388 4.6E-143 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BED32_16825 94cc86f6fd24f6e3e50a5c9b84fd3fb1 394 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 17 393 42.481 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BED32_16825 94cc86f6fd24f6e3e50a5c9b84fd3fb1 394 SUPERFAMILY SSF53756 20 361 1.15E-26 T 11-10-2018 BED32_16825 94cc86f6fd24f6e3e50a5c9b84fd3fb1 394 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 15 391 2.3E-170 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 BED32_01800 c3d1ce86baa8f941ec0d93bc381b7fcd 73 Pfam PF09526 Probable metal-binding protein (DUF2387) 10 59 9.1E-20 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 BED32_01800 c3d1ce86baa8f941ec0d93bc381b7fcd 73 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 9 67 3.0E-30 T 11-10-2018 IPR012658 Conserved hypothetical protein CHP02443 BED32_16265 07a34bcc2e53963d80f62cd2dea05f5f 153 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 8 139 3.6E-35 T 11-10-2018 BED32_16265 07a34bcc2e53963d80f62cd2dea05f5f 153 PIRSF PIRSF004923 1 151 7.5E-39 T 11-10-2018 IPR026268 Protein RseC BED32_11175 17299353806a7c6b362b87bfd9c0fe68 105 Pfam PF03891 Domain of unknown function (DUF333) 54 101 3.1E-26 T 11-10-2018 IPR005590 Protein of unknown function DUF333 BED32_15025 3b6d8b31fa6d8425451b1c71679dda52 115 Pfam PF04606 Ogr/Delta-like zinc finger 8 53 3.7E-18 T 11-10-2018 IPR007684 Zinc finger, Ogr/Delta-type BED32_11170 95d42f5b2637482f7752c5f5e155bf37 219 Pfam PF02308 MgtC family 10 138 2.6E-40 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_11170 95d42f5b2637482f7752c5f5e155bf37 219 PRINTS PR01837 MgtC/SapB protein signature 65 87 1.7E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_11170 95d42f5b2637482f7752c5f5e155bf37 219 PRINTS PR01837 MgtC/SapB protein signature 92 116 1.7E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_11170 95d42f5b2637482f7752c5f5e155bf37 219 PRINTS PR01837 MgtC/SapB protein signature 12 31 1.7E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_11170 95d42f5b2637482f7752c5f5e155bf37 219 PRINTS PR01837 MgtC/SapB protein signature 31 49 1.7E-47 T 11-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 BED32_00780 f2fcbeb350f3aeb780b96d73342a182b 112 Pfam PF04219 Protein of unknown function, DUF 10 98 3.3E-39 T 11-10-2018 IPR007335 Protein of unknown function DUF413 BED32_07135 7687210be3989b521416fe8d01c649ce 111 Gene3D G3DSA:1.10.1220.10 1 48 2.5E-18 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 BED32_07135 7687210be3989b521416fe8d01c649ce 111 SUPERFAMILY SSF47598 1 47 9.21E-14 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_07135 7687210be3989b521416fe8d01c649ce 111 Pfam PF03869 Arc-like DNA binding domain 12 47 2.4E-11 T 11-10-2018 IPR005569 Arc-like DNA binding domain GO:0003677 BED32_11360 b3ad6b5e1d05660144b5ee75c7350bf1 284 Pfam PF07520 Virulence factor SrfB 5 281 1.5E-108 T 11-10-2018 IPR009216 Virulence factor SrfB BED32_05655 51ab6b84c1837ba2fc0267752b60b064 257 SUPERFAMILY SSF141523 45 163 1.57E-9 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BED32_05655 51ab6b84c1837ba2fc0267752b60b064 257 Pfam PF03734 L,D-transpeptidase catalytic domain 48 163 8.5E-8 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BED32_05435 5e48b28551329e0006bdc1a856e3d023 153 Pfam PF03245 Bacteriophage Rz lysis protein 30 151 1.8E-41 T 11-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 BED32_11675 5e48b28551329e0006bdc1a856e3d023 153 Pfam PF03245 Bacteriophage Rz lysis protein 30 151 1.8E-41 T 11-10-2018 IPR004929 Spanin, inner membrane subunit GO:0019076|GO:0019835 BED32_11380 e204d4c2ae56176199a35b1b2e89d779 136 Pfam PF13449 Esterase-like activity of phytase 66 123 9.5E-11 T 11-10-2018 IPR027372 Phytase-like domain BED32_13195 c6f8ea9ec24fbd9df2084dcb300e8472 176 Pfam PF02620 Uncharacterized ACR, COG1399 62 171 6.5E-17 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD BED32_01160 a943618713ed2e080714f493fea64b7d 111 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 36.513 T 11-10-2018 IPR019598 Universal stress protein B BED32_01160 a943618713ed2e080714f493fea64b7d 111 Pfam PF10625 Universal stress protein B (UspB) 1 105 6.4E-54 T 11-10-2018 IPR019598 Universal stress protein B BED32_05795 806b7da8364c7fb1cd4ddee117069ea8 164 Pfam PF00583 Acetyltransferase (GNAT) family 56 147 5.4E-12 T 11-10-2018 IPR000182 GNAT domain BED32_05795 806b7da8364c7fb1cd4ddee117069ea8 164 Gene3D G3DSA:3.40.630.30 1 158 2.7E-35 T 11-10-2018 BED32_05795 806b7da8364c7fb1cd4ddee117069ea8 164 SUPERFAMILY SSF55729 1 152 6.15E-23 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_08760 e79d5dd1eab04e03956cca44f5901cd1 316 Pfam PF02653 Branched-chain amino acid transport system / permease component 33 307 2.5E-39 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 161 33.987 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 162 2.0E-68 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 Pfam PF00588 SpoU rRNA Methylase family 2 152 9.8E-31 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 PIRSF PIRSF029256 1 164 1.5E-68 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 SUPERFAMILY SSF75217 1 162 3.2E-41 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases BED32_20890 32698d03b3c78484e6e90bf1536c5b65 167 Gene3D G3DSA:3.40.1280.10 1 167 7.7E-73 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal BED32_00290 6ad0934cf4a64b4a695e09ab66ebdb4d 141 Pfam PF05932 Tir chaperone protein (CesT) family 7 119 8.5E-25 T 11-10-2018 IPR010261 Tir chaperone protein (CesT) family GO:0005737|GO:0050708 BED32_00290 6ad0934cf4a64b4a695e09ab66ebdb4d 141 SUPERFAMILY SSF69635 3 118 6.59E-30 T 11-10-2018 BED32_00290 6ad0934cf4a64b4a695e09ab66ebdb4d 141 Gene3D G3DSA:3.30.1460.10 1 141 2.5E-53 T 11-10-2018 BED32_03920 5779aeb93f613196328db8e168972438 97 Pfam PF10135 Rod binding protein 42 93 1.6E-11 T 11-10-2018 IPR019301 Flagellar protein FlgJ, N-terminal BED32_02335 1adb62eee903b7ee3132058c59a366b2 141 Pfam PF03788 LrgA family 31 122 3.3E-26 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 BED32_04575 fb6d9fc5370be48213746a0102d058d7 66 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 5 63 9.1E-13 T 11-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 BED32_04575 fb6d9fc5370be48213746a0102d058d7 66 Gene3D G3DSA:3.30.920.30 1 65 1.6E-17 T 11-10-2018 IPR038570 HicA superfamily BED32_04575 fb6d9fc5370be48213746a0102d058d7 66 SUPERFAMILY SSF54786 1 64 1.41E-11 T 11-10-2018 BED32_16540 f470d26ccedda5196890d7c88c91ab8f 52 SUPERFAMILY SSF46689 1 50 1.57E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_16540 f470d26ccedda5196890d7c88c91ab8f 52 Gene3D G3DSA:1.10.10.60 1 51 2.1E-12 T 11-10-2018 BED32_16540 f470d26ccedda5196890d7c88c91ab8f 52 Pfam PF12833 Helix-turn-helix domain 1 48 1.5E-9 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 BED32_08245 608d3d3b2b5789a75f88b9d0a2e853eb 326 Gene3D G3DSA:1.20.970.10 1 71 4.1E-31 T 11-10-2018 BED32_08245 608d3d3b2b5789a75f88b9d0a2e853eb 326 SUPERFAMILY SSF52418 76 317 1.57E-40 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_08245 608d3d3b2b5789a75f88b9d0a2e853eb 326 Gene3D G3DSA:3.40.1030.10 73 321 7.3E-93 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_08245 608d3d3b2b5789a75f88b9d0a2e853eb 326 SUPERFAMILY SSF47648 7 72 6.15E-15 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_08245 608d3d3b2b5789a75f88b9d0a2e853eb 326 Pfam PF02885 Glycosyl transferase family, helical bundle domain 5 68 1.6E-10 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 Gene3D G3DSA:3.40.30.60 360 503 1.8E-40 T 11-10-2018 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 Gene3D G3DSA:1.10.8.540 504 591 3.5E-12 T 11-10-2018 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 Gene3D G3DSA:1.10.490.80 594 697 5.5E-10 T 11-10-2018 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PIRSF PIRSF005419 1 698 6.0E-217 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 143 166 - T 11-10-2018 IPR025505 FHIPEP conserved site BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 Pfam PF00771 FHIPEP family 27 689 1.4E-234 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 138 154 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 34 47 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 187 204 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 238 252 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 157 175 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_03795 31e1915e51a0ceb3c0da19bbab28696a 698 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 71 90 2.6E-54 T 11-10-2018 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 BED32_08130 eb0008c9659028469decb480c6b8c3af 301 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 29 282 1.3E-77 T 11-10-2018 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 BED32_08130 eb0008c9659028469decb480c6b8c3af 301 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 272 2.3E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_08130 eb0008c9659028469decb480c6b8c3af 301 SUPERFAMILY SSF161098 85 274 3.76E-26 T 11-10-2018 IPR035906 MetI-like superfamily BED32_08130 eb0008c9659028469decb480c6b8c3af 301 Gene3D G3DSA:1.10.3720.10 81 282 1.4E-23 T 11-10-2018 IPR035906 MetI-like superfamily BED32_14250 e5b4a4444a8565b0d38d3aad33f2c6af 108 Pfam PF07377 Protein of unknown function (DUF1493) 5 108 2.2E-24 T 11-10-2018 IPR010862 Protein of unknown function DUF1493 BED32_20220 9e37b023d41f7343f83d4d78fcdc4a09 208 Pfam PF07947 YhhN family 26 206 1.6E-45 T 11-10-2018 IPR012506 YhhN-like GO:0016021 BED32_18660 6a8b6ab4c372b78dbc4e294134a83056 167 Pfam PF00583 Acetyltransferase (GNAT) family 44 144 4.0E-15 T 11-10-2018 IPR000182 GNAT domain BED32_18660 6a8b6ab4c372b78dbc4e294134a83056 167 Gene3D G3DSA:3.40.630.30 15 151 5.5E-26 T 11-10-2018 BED32_18660 6a8b6ab4c372b78dbc4e294134a83056 167 SUPERFAMILY SSF55729 9 166 2.92E-29 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase BED32_00125 90ffb6ae8ee9fea93b6da1ffd6540e3f 282 TIGRFAM TIGR03474 incFII_RepA: incFII family plasmid replication initiator RepA 6 280 4.3E-182 T 11-10-2018 IPR017837 Plasmid replication initiator, RepA, IncFII type BED32_00125 90ffb6ae8ee9fea93b6da1ffd6540e3f 282 Pfam PF02387 IncFII RepA protein family 8 241 7.9E-30 T 11-10-2018 IPR003446 Plasmid replication initiation, RepA GO:0006276 BED32_00965 f2ba1557d152bc02a061140a8b993e0f 563 Pfam PF08019 Domain of unknown function (DUF1705) 56 180 3.8E-18 T 11-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 BED32_00965 f2ba1557d152bc02a061140a8b993e0f 563 SUPERFAMILY SSF53649 250 542 4.67E-16 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 BED32_00965 f2ba1557d152bc02a061140a8b993e0f 563 Gene3D G3DSA:3.40.720.10 244 553 6.2E-58 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 BED32_00965 f2ba1557d152bc02a061140a8b993e0f 563 Pfam PF00884 Sulfatase 250 538 1.0E-40 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 BED32_08535 9045c066472eb532ba5bd49141cf1aa3 271 Pfam PF02698 DUF218 domain 48 170 1.4E-18 T 11-10-2018 IPR003848 Domain of unknown function DUF218 BED32_08535 9045c066472eb532ba5bd49141cf1aa3 271 PIRSF PIRSF005011 1 248 2.6E-150 T 11-10-2018 IPR023604 Uncharacterised protein family SanA BED32_00070 c12ee92a3b09e99cb77ef46ecab5f682 205 PIRSF PIRSF002859 1 205 1.8E-133 T 11-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 BED32_00070 c12ee92a3b09e99cb77ef46ecab5f682 205 Pfam PF05818 Enterobacterial TraT complement resistance protein 1 205 1.3E-77 T 11-10-2018 IPR008874 Enterobacterial TraT complement resistance GO:0019867|GO:0046999 BED32_03225 f34443fe7e2669b3fca36a777fb5bc16 230 Pfam PF09335 SNARE associated Golgi protein 48 172 8.3E-20 T 11-10-2018 IPR032816 SNARE associated Golgi protein BED32_21890 5dafa69f5de31bf7668ff450e018bd75 415 Pfam PF03743 Bacterial conjugation TrbI-like protein 212 404 8.3E-14 T 11-10-2018 IPR005498 Type IV secretion system, VirB10 / TraB / TrbI BED32_02245 1443c5d4ce5f88eb863e7fe52ee2cd46 169 Gene3D G3DSA:1.10.10.10 1 89 3.5E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_02245 1443c5d4ce5f88eb863e7fe52ee2cd46 169 Gene3D G3DSA:3.30.1490.190 90 152 1.2E-15 T 11-10-2018 BED32_02245 1443c5d4ce5f88eb863e7fe52ee2cd46 169 Pfam PF01475 Ferric uptake regulator family 20 138 9.0E-14 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 BED32_02245 1443c5d4ce5f88eb863e7fe52ee2cd46 169 SUPERFAMILY SSF46785 12 144 3.07E-33 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily BED32_00935 b6f01b984dc8b817364b4eeedf532217 148 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 95 115 1.1 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat BED32_00935 b6f01b984dc8b817364b4eeedf532217 148 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 46 84 0.11 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat BED32_00935 b6f01b984dc8b817364b4eeedf532217 148 Gene3D G3DSA:2.160.20.10 13 98 4.8E-6 T 11-10-2018 IPR012334 Pectin lyase fold BED32_13410 11fae7fb999e3f1ea27bde581baaaf3a 121 Pfam PF07784 Protein of unknown function (DUF1622) 42 104 1.7E-24 T 11-10-2018 IPR012427 Protein of unknown function DUF1622 BED32_20815 ed8a554180a13fdf1976adb1664dec14 394 Pfam PF07690 Major Facilitator Superfamily 14 350 7.1E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 BED32_20815 ed8a554180a13fdf1976adb1664dec14 394 SUPERFAMILY SSF103473 7 390 4.45E-58 T 11-10-2018 IPR036259 MFS transporter superfamily BED32_20815 ed8a554180a13fdf1976adb1664dec14 394 Gene3D G3DSA:1.20.1720.10 9 383 6.3E-121 T 11-10-2018 BED32_18780 d39f1b296074fb1d6d18e6ff28f59c3c 209 Gene3D G3DSA:3.40.50.720 1 209 1.5E-48 T 11-10-2018 BED32_18780 d39f1b296074fb1d6d18e6ff28f59c3c 209 SUPERFAMILY SSF51735 1 199 2.04E-35 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_18600 f6833a6dec7eaf9c8ec1ee2a56347341 160 Pfam PF10696 Protein of unknown function (DUF2501) 79 157 2.2E-29 T 11-10-2018 IPR019637 Protein of unknown function DUF2501 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 Pfam PF00293 NUDIX domain 21 148 4.1E-17 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 PRINTS PR01404 DATP pyrophosphohydrolase signature 16 33 2.3E-46 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 PRINTS PR01404 DATP pyrophosphohydrolase signature 84 103 2.3E-46 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 PRINTS PR01404 DATP pyrophosphohydrolase signature 33 54 2.3E-46 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 PRINTS PR01404 DATP pyrophosphohydrolase signature 112 133 2.3E-46 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 PRINTS PR01404 DATP pyrophosphohydrolase signature 139 152 2.3E-46 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 Gene3D G3DSA:3.90.79.10 11 160 2.1E-42 T 11-10-2018 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 ProSitePatterns PS00893 Nudix box signature. 51 72 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 BED32_10170 2406f1d42041560e7500a2f528be66fe 160 SUPERFAMILY SSF55811 14 157 3.52E-25 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 BED32_12865 92577b69beefb90a13e00e4dd81c9b6e 304 SUPERFAMILY SSF103481 187 289 5.89E-9 T 11-10-2018 BED32_12865 92577b69beefb90a13e00e4dd81c9b6e 304 SUPERFAMILY SSF103481 36 138 6.02E-13 T 11-10-2018 BED32_12865 92577b69beefb90a13e00e4dd81c9b6e 304 Pfam PF00892 EamA-like transporter family 3 135 1.0E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_12865 92577b69beefb90a13e00e4dd81c9b6e 304 Pfam PF00892 EamA-like transporter family 151 286 1.2E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 BED32_11400 ccc0a332d00c069c369a869fc3ec3e09 129 Pfam PF13396 Phospholipase_D-nuclease N-terminal 23 67 3.1E-6 T 11-10-2018 IPR027379 Cardiolipin synthase N-terminal BED32_01540 14ded21f8054bada502635b8ce13706d 336 Gene3D G3DSA:1.20.910.10 95 316 2.3E-20 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BED32_01540 14ded21f8054bada502635b8ce13706d 336 SUPERFAMILY SSF48613 100 295 1.16E-8 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BED32_18330 b704e40aa67b3dde00566eae14baa666 225 Pfam PF10144 Bacterial virulence factor haemolysin 1 162 2.1E-66 T 11-10-2018 IPR019305 Uncharacterised protein family Smp BED32_04035 067e7484f11c9ce21172bd3409b5d413 353 Gene3D G3DSA:3.40.50.300 149 353 2.6E-63 T 11-10-2018 BED32_04035 067e7484f11c9ce21172bd3409b5d413 353 SUPERFAMILY SSF52540 139 349 1.14E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase BED32_04035 067e7484f11c9ce21172bd3409b5d413 353 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 141 352 1.4E-92 T 11-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 BED32_04035 067e7484f11c9ce21172bd3409b5d413 353 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 169 330 1.0E-36 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain BED32_10505 5f1450ae6c1ce2bd5e5316720963ba3e 305 Gene3D G3DSA:1.10.3720.10 23 296 6.9E-63 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10505 5f1450ae6c1ce2bd5e5316720963ba3e 305 SUPERFAMILY SSF161098 29 305 1.83E-70 T 11-10-2018 IPR035906 MetI-like superfamily BED32_10505 5f1450ae6c1ce2bd5e5316720963ba3e 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 120 299 1.8E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 BED32_03065 01c1f5f841ae68775b719daacee5ace2 217 PIRSF PIRSF006320 1 216 8.2E-101 T 11-10-2018 IPR026041 Glyoxalase ElbB BED32_03065 01c1f5f841ae68775b719daacee5ace2 217 SUPERFAMILY SSF52317 1 215 8.64E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_03065 01c1f5f841ae68775b719daacee5ace2 217 Gene3D G3DSA:3.40.50.880 1 217 1.2E-92 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like BED32_12225 627ec5156a80e0e3f503144b250a34e8 219 SUPERFAMILY SSF52499 2 211 1.24E-52 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_12225 627ec5156a80e0e3f503144b250a34e8 219 Pfam PF00857 Isochorismatase family 4 205 1.1E-34 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 BED32_12225 627ec5156a80e0e3f503144b250a34e8 219 Gene3D G3DSA:3.40.50.850 1 210 3.9E-63 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_20125 e338974691e270683db11333679176c7 215 Gene3D G3DSA:2.60.40.10 19 142 8.1E-19 T 11-10-2018 IPR013783 Immunoglobulin-like fold BED32_08035 a18af0baa2be56f4e484276c84bd7f92 236 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 232 1.6E-62 T 11-10-2018 IPR006214 Bax inhibitor 1-related BED32_12935 9750f9a227497698f3d8f29ae176ed0c 412 Pfam PF04932 O-Antigen ligase 193 340 1.9E-15 T 11-10-2018 IPR007016 O-antigen ligase-related BED32_20085 3b5484cda704eb4fc59ad06762c8c6ad 246 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 13 240 1.6E-38 T 11-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 BED32_20085 3b5484cda704eb4fc59ad06762c8c6ad 246 SUPERFAMILY SSF51695 6 242 6.28E-63 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_20085 3b5484cda704eb4fc59ad06762c8c6ad 246 Gene3D G3DSA:3.20.20.190 9 237 1.9E-78 T 11-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 BED32_05440 8e7d4c2dbce43f35724eaa1db285137c 228 Pfam PF09669 Phage regulatory protein Rha (Phage_pRha) 13 100 7.3E-17 T 11-10-2018 IPR014054 Bacteriophage regulatory protein, Rha family BED32_00770 8e21094e8c37013cf65bd2459627f119 330 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 302 1.2E-42 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_02660 ebe2b6933dc40be8c3dd9fdf78ae1278 343 Pfam PF05125 Phage major capsid protein, P2 family 13 325 2.2E-110 T 11-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid BED32_02660 ebe2b6933dc40be8c3dd9fdf78ae1278 343 TIGRFAM TIGR01551 major_capsid_P2: phage major capsid protein, P2 family 12 319 4.7E-96 T 11-10-2018 IPR006441 Bacteriophage P2, GpN, major capsid BED32_13605 00a897a79f919edc9de5ea57abb0db18 255 Pfam PF02698 DUF218 domain 80 242 6.5E-26 T 11-10-2018 IPR003848 Domain of unknown function DUF218 BED32_05810 1d032743235827910d575cefdc5e8cb8 185 SUPERFAMILY SSF53335 14 159 4.56E-15 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_05810 1d032743235827910d575cefdc5e8cb8 185 Gene3D G3DSA:3.40.50.150 16 175 3.2E-12 T 11-10-2018 BED32_00900 42d9fbc7226e986fdf28f2d6e6e99d1a 284 Pfam PF13708 Domain of unknown function (DUF4942) 84 271 4.1E-59 T 11-10-2018 IPR031339 Domain of unknown function DUF4942 BED32_06060 4a4176817d6cad5080a66f4e64540211 192 Pfam PF03923 Uncharacterized lipoprotein 29 188 3.0E-54 T 11-10-2018 IPR005619 Uncharacterised protein family, YajG BED32_06060 4a4176817d6cad5080a66f4e64540211 192 Pfam PF08139 Prokaryotic membrane lipoprotein lipid attachment site 1 20 4.3E-5 T 11-10-2018 IPR012640 Membrane lipoprotein, lipid attachment site BED32_06705 a38f13b16266aabbdfc0f7d619d86835 638 Pfam PF05876 Phage terminase large subunit (GpA) 25 578 5.9E-167 T 11-10-2018 IPR008866 Bacteriophage lambda, GpA BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 1 363 6.2E-131 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 Pfam PF03222 Tryptophan/tyrosine permease family 1 369 2.0E-127 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 296 314 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 17 36 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 162 184 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 262 281 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 128 148 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 62 82 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 317 336 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_14450 33e6e36ad966f949e2594019f8f800ff 382 PRINTS PR00166 Aromatic amino acid permease signature 201 220 2.0E-75 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 BED32_10965 b06cb3092aa35a9b6734a90097bc9929 155 Pfam PF05433 Glycine zipper 2TM domain 62 102 1.3E-7 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BED32_17195 8a0c5e05399d939e4ac6e2f3d626dc6a 94 Gene3D G3DSA:3.30.1300.30 4 90 1.8E-11 T 11-10-2018 BED32_17195 8a0c5e05399d939e4ac6e2f3d626dc6a 94 Pfam PF02501 Type II secretion system (T2SS), protein I 14 90 2.4E-10 T 11-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 BED32_17195 8a0c5e05399d939e4ac6e2f3d626dc6a 94 SUPERFAMILY SSF54523 12 91 2.51E-16 T 11-10-2018 BED32_12480 fc50fa98e7b92dc6ddcbb08298177756 259 Gene3D G3DSA:3.20.20.150 1 259 4.2E-78 T 11-10-2018 BED32_12480 fc50fa98e7b92dc6ddcbb08298177756 259 SUPERFAMILY SSF51658 1 258 9.95E-84 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily BED32_12480 fc50fa98e7b92dc6ddcbb08298177756 259 PIRSF PIRSF006241 1 259 3.6E-89 T 11-10-2018 IPR026040 Hydroxypyruvate isomerase-like BED32_12480 fc50fa98e7b92dc6ddcbb08298177756 259 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 1.1E-31 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain BED32_11660 5505e8403c722540d3660ca15006bf04 471 Pfam PF06381 Protein of unknown function (DUF1073) 37 328 1.9E-18 T 11-10-2018 IPR024459 Protein of unknown function DUF1073 BED32_19450 77910440c4fdfbaf693f49fce6c6e3cd 334 Gene3D G3DSA:1.10.3470.10 4 334 4.4E-133 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_19450 77910440c4fdfbaf693f49fce6c6e3cd 334 SUPERFAMILY SSF81345 3 327 7.06E-88 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_19450 77910440c4fdfbaf693f49fce6c6e3cd 334 Pfam PF01032 FecCD transport family 18 327 5.4E-95 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_15325 569d402230ff8ffbf4ba22c7f9031bf4 71 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 68 3.9E-31 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor BED32_15325 569d402230ff8ffbf4ba22c7f9031bf4 71 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 68 2.0E-24 T 11-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor BED32_22150 e659ec7809f43e4da942f027fee9efad 138 Pfam PF00816 H-NS histone family 51 126 5.7E-6 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BED32_21685 e659ec7809f43e4da942f027fee9efad 138 Pfam PF00816 H-NS histone family 51 126 5.7E-6 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 BED32_21670 163d87a7351716ac760e932e435be181 242 Pfam PF13643 Domain of unknown function (DUF4145) 126 205 2.0E-6 T 11-10-2018 IPR025285 Domain of unknown function DUF4145 BED32_22135 163d87a7351716ac760e932e435be181 242 Pfam PF13643 Domain of unknown function (DUF4145) 126 205 2.0E-6 T 11-10-2018 IPR025285 Domain of unknown function DUF4145 BED32_04245 023c2f6eba152ede6194440b08cf33ac 76 Pfam PF03811 InsA N-terminal domain 2 21 7.5E-9 T 11-10-2018 IPR003220 InsA N-terminal domain GO:0006313 BED32_04245 023c2f6eba152ede6194440b08cf33ac 76 Pfam PF12759 InsA C-terminal domain 28 73 6.8E-31 T 11-10-2018 IPR024431 Insertion element IS1 protein InsA, helix-turn-helix domain BED32_12830 61c359e28c8a32debb7ed305a895417a 317 SUPERFAMILY SSF56219 27 313 6.15E-16 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily BED32_12830 61c359e28c8a32debb7ed305a895417a 317 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 29 252 2.3E-9 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase BED32_02105 938938956646cdfb5faa99981d8366f6 63 SUPERFAMILY SSF48295 4 41 4.71E-8 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_20080 baec415362980f7a9ce969cfa21da4cc 319 Pfam PF03547 Membrane transport protein 17 155 1.3E-10 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BED32_20080 baec415362980f7a9ce969cfa21da4cc 319 Pfam PF03547 Membrane transport protein 169 310 2.9E-15 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 BED32_03740 e12f2c7805a4492ea76cea355d2630e1 105 Gene3D G3DSA:1.10.10.60 12 95 1.4E-5 T 11-10-2018 BED32_03740 e12f2c7805a4492ea76cea355d2630e1 105 SUPERFAMILY SSF46689 8 96 1.97E-15 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 BED32_03740 e12f2c7805a4492ea76cea355d2630e1 105 Pfam PF01527 Transposase 6 79 5.4E-14 T 11-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 SUPERFAMILY SSF52172 17 193 4.14E-35 T 11-10-2018 IPR011006 CheY-like superfamily BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 PIRSF PIRSF036382 9 200 3.6E-37 T 11-10-2018 IPR008327 Signal transduction response regulator, antiterminator BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 SMART SM01012 138 193 5.6E-13 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 Gene3D G3DSA:3.40.50.2300 10 131 1.1E-35 T 11-10-2018 BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 Gene3D G3DSA:1.10.10.10 141 198 3.2E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_04820 67d89c58b0f990bcb7ef5586ee703725 212 Pfam PF03861 ANTAR domain 141 193 3.5E-11 T 11-10-2018 IPR005561 ANTAR domain GO:0003723 BED32_03825 cada9795ac88eab3de6d1dcbea21c6c8 291 SUPERFAMILY SSF101801 214 277 1.2E-5 T 11-10-2018 IPR036429 SpoA-like superfamily BED32_03825 cada9795ac88eab3de6d1dcbea21c6c8 291 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 216 276 4.6E-7 T 11-10-2018 IPR001543 Surface presentation of antigen (SpoA) BED32_17525 156c27898229a5bcf39f4d511b51b49f 198 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 11 192 2.1E-49 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BED32_17525 156c27898229a5bcf39f4d511b51b49f 198 PIRSF PIRSF006806 7 195 1.2E-40 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BED32_17525 156c27898229a5bcf39f4d511b51b49f 198 Gene3D G3DSA:3.40.50.10420 4 197 3.7E-57 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily BED32_17525 156c27898229a5bcf39f4d511b51b49f 198 SUPERFAMILY SSF100950 10 198 6.14E-57 T 11-10-2018 IPR037171 NagB/RpiA transferase-like BED32_17525 156c27898229a5bcf39f4d511b51b49f 198 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 2.3E-54 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase BED32_13965 f2d4cc6ca42faae478c27eb7d1119fed 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_13965 f2d4cc6ca42faae478c27eb7d1119fed 339 Pfam PF01548 Transposase 6 142 8.6E-14 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_04695 75218269e042e681e91c142685dfe99e 181 SUPERFAMILY SSF49401 33 180 4.82E-30 T 11-10-2018 IPR008966 Adhesion domain superfamily BED32_04695 75218269e042e681e91c142685dfe99e 181 Gene3D G3DSA:2.60.40.1090 32 180 2.7E-26 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_04695 75218269e042e681e91c142685dfe99e 181 Pfam PF00419 Fimbrial protein 36 180 4.5E-11 T 11-10-2018 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 103 119 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 261 281 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 126 145 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 206 224 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 171 189 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 156 170 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 239 256 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 PRINTS PR01486 Bacterial phospholipase A1 protein signature 81 98 1.3E-83 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 Gene3D G3DSA:2.40.230.10 33 292 2.0E-104 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 Pfam PF02253 Phospholipase A1 43 288 2.3E-96 T 11-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_20295 076dff7fb23cfa993e92e99c9b351064 292 SUPERFAMILY SSF56931 39 291 5.89E-93 T 11-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 BED32_00430 4d323a4f2a7edecc5ed5fdd8ee8b3f33 108 TIGRFAM TIGR02502 type_III_YscX: type III secretion protein, YscX family 1 108 1.5E-52 T 11-10-2018 IPR012672 Type III secretion system YscX BED32_00430 4d323a4f2a7edecc5ed5fdd8ee8b3f33 108 Pfam PF09474 Type III secretion system YscX (type_III_YscX) 1 108 6.0E-47 T 11-10-2018 IPR012672 Type III secretion system YscX BED32_12555 b96292161e8486b3076d11e1f9d51d34 403 Pfam PF00872 Transposase, Mutator family 10 376 5.5E-101 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_13375 c1bcc63ac5d5ce10428b2be5a0ed151c 327 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 8 327 6.2E-129 T 11-10-2018 IPR017566 NrfD BED32_13375 c1bcc63ac5d5ce10428b2be5a0ed151c 327 Gene3D G3DSA:1.20.1630.10 6 247 1.3E-13 T 11-10-2018 BED32_13375 c1bcc63ac5d5ce10428b2be5a0ed151c 327 Pfam PF03916 Polysulphide reductase, NrfD 7 326 2.1E-83 T 11-10-2018 IPR005614 NrfD family BED32_02250 349bc616758ec3fdc7c36c8babc47b44 669 Pfam PF01757 Acyltransferase family 8 334 2.3E-22 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 BED32_18280 909bbdb7afb6c13552e66161c483ab15 210 Pfam PF13689 Domain of unknown function (DUF4154) 68 204 9.8E-34 T 11-10-2018 IPR025293 YfiR-like BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 SUPERFAMILY SSF116960 1 164 5.23E-70 T 11-10-2018 BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 PIRSF PIRSF006272 1 164 1.6E-75 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 Pfam PF03887 YfbU domain 1 164 7.0E-70 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 164 4.0E-94 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 164 38.232 T 11-10-2018 IPR005587 Uncharacterised protein family UPF0304, YfbU BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 Gene3D G3DSA:1.10.287.680 1 53 5.4E-33 T 11-10-2018 IPR023145 YfbU, helix-hairpin domain superfamily BED32_14645 23be121c8400fdfdc6b14383e535c90d 164 Gene3D G3DSA:1.10.3190.10 54 164 2.1E-40 T 11-10-2018 IPR023146 YfbU, alpha-helical bundle domain superfamily BED32_04415 e24b58e1515b86242bfba3b5d3c8f31f 139 Pfam PF04143 Sulphur transport 43 130 6.2E-7 T 11-10-2018 IPR007272 Sulphur transport domain BED32_06335 dd127114bae1772ef27950a60c052eb2 358 SUPERFAMILY SSF53756 4 346 7.46E-69 T 11-10-2018 BED32_06335 dd127114bae1772ef27950a60c052eb2 358 Pfam PF00534 Glycosyl transferases group 1 177 331 8.2E-33 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 BED32_06335 dd127114bae1772ef27950a60c052eb2 358 Gene3D G3DSA:3.40.50.2000 170 341 1.7E-60 T 11-10-2018 BED32_06335 dd127114bae1772ef27950a60c052eb2 358 Pfam PF13439 Glycosyltransferase Family 4 15 169 2.3E-15 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 BED32_06335 dd127114bae1772ef27950a60c052eb2 358 Gene3D G3DSA:3.40.50.2000 15 344 1.7E-60 T 11-10-2018 BED32_15655 85dcaf9a44c07a5fe0ad1819c2277a4e 354 Pfam PF01594 AI-2E family transporter 19 345 1.3E-79 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like BED32_13450 417586aa1ad4bf8bda207c502d5cd87f 150 Pfam PF03733 Inner membrane component domain 4 53 1.3E-9 T 11-10-2018 IPR005185 Inner membrane component domain BED32_13450 417586aa1ad4bf8bda207c502d5cd87f 150 Pfam PF03733 Inner membrane component domain 77 127 1.3E-18 T 11-10-2018 IPR005185 Inner membrane component domain BED32_13450 417586aa1ad4bf8bda207c502d5cd87f 150 PIRSF PIRSF028777 1 139 3.6E-55 T 11-10-2018 IPR031308 Uncharacterised conserved protein UCP028777 BED32_12785 7da119ff79ca38a5784ae3d3b60e305f 91 Pfam PF13974 YebO-like protein 16 91 7.4E-29 T 11-10-2018 IPR025594 YebO-like protein BED32_14310 87bbb002c63a5b5f2d192a7d8c366d99 109 Pfam PF10828 Protein of unknown function (DUF2570) 7 107 2.8E-9 T 11-10-2018 IPR022538 Protein of unknown function DUF2570 BED32_00645 529d2d801d7fade01b54337f69c77fb4 218 Pfam PF06438 Heme-binding protein A (HasA) 1 211 2.7E-32 T 11-10-2018 IPR010495 Haem-binding HasA BED32_00645 529d2d801d7fade01b54337f69c77fb4 218 Gene3D G3DSA:3.30.1500.10 1 209 1.4E-60 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_00645 529d2d801d7fade01b54337f69c77fb4 218 SUPERFAMILY SSF54621 3 197 6.67E-10 T 11-10-2018 IPR036912 Haem-binding HasA superfamily BED32_14025 0d1dc757ceb7b2d60628545a3bd131c8 360 Pfam PF01032 FecCD transport family 43 355 2.2E-83 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 BED32_14025 0d1dc757ceb7b2d60628545a3bd131c8 360 SUPERFAMILY SSF81345 24 355 1.7E-77 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_14025 0d1dc757ceb7b2d60628545a3bd131c8 360 Gene3D G3DSA:1.10.3470.10 27 359 3.9E-96 T 11-10-2018 IPR037294 ABC transporter, BtuC-like BED32_13915 d33dac69782918ef527048432d4b8c89 161 Pfam PF10722 Putative bacterial sensory transduction regulator 9 130 1.4E-14 T 11-10-2018 IPR019660 Putative sensory transduction regulator YbjN BED32_01165 e9071f1b63bb852612c6e1bb651e708b 498 Pfam PF01384 Phosphate transporter family 30 487 8.9E-89 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 BED32_15625 ac3465f3de2c17849c60226b4769da3f 289 Pfam PF04228 Putative neutral zinc metallopeptidase 1 286 4.7E-137 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative BED32_21930 c9b5551da860fb8790f0ec54baf0bd2e 132 Pfam PF08308 PEGA domain 37 80 1.9E-7 T 11-10-2018 IPR013229 PEGA BED32_18570 cf8897beb18d7769bb0231ecf97311a0 365 Pfam PF02653 Branched-chain amino acid transport system / permease component 45 307 3.2E-44 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_11100 16812584fff75ef90dd723cb2ab14986 465 Pfam PF04317 YcjX-like family, DUF463 20 464 3.3E-188 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein BED32_11100 16812584fff75ef90dd723cb2ab14986 465 PIRSF PIRSF019381 1 465 1.5E-219 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein BED32_10545 95fb74ea16ef993a1570645748fd42ec 184 Pfam PF14002 YniB-like protein 15 179 6.5E-83 T 11-10-2018 IPR025229 YniB-like protein BED32_10545 95fb74ea16ef993a1570645748fd42ec 184 ProDom PD035714 MEMBRANE REGULATOR YNIB TRANSMEMBRANE YFEABCD YFEE PROBABLE LOCUS ESCHERICHIA ECS2432 1 181 2.0E-90 T 11-10-2018 BED32_02675 6f01133dc8296ce1b82425a481db225a 162 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 134 1.8E-29 T 11-10-2018 IPR009678 Bacteriophage tail completion protein R BED32_05285 cdaf8511169a4bb557bd902ba81de4eb 272 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 21 254 5.4E-27 T 11-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain BED32_06535 cdaf8511169a4bb557bd902ba81de4eb 272 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 21 254 5.4E-27 T 11-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain BED32_16195 224d6cf9be59f014c1d6d06f18ff73b8 349 Pfam PF09925 Predicted membrane protein (DUF2157) 17 167 2.1E-6 T 11-10-2018 IPR018677 Domain of unknown function DUF2157 BED32_04500 a2f5b6aecfba31423b3dbe171f1f34cc 98 SUPERFAMILY SSF48295 6 59 7.85E-9 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_04500 a2f5b6aecfba31423b3dbe171f1f34cc 98 Pfam PF13518 Helix-turn-helix domain 13 58 2.4E-8 T 11-10-2018 BED32_13890 e2d9dbc60ace21e1774d9239c60c4b0d 158 Pfam PF10767 Protein of unknown function (DUF2593) 16 155 9.3E-60 T 11-10-2018 IPR019703 Protein of unknown function DUF2593 BED32_02020 1b42c1f56ce0e872acb8c86881a329ac 68 Pfam PF03889 Domain of unknown function 9 45 1.9E-19 T 11-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 BED32_02605 a12e34e4f57e895523792f80d5515853 103 Gene3D G3DSA:1.10.1660.70 2 75 1.2E-7 T 11-10-2018 IPR038147 Cox superfamily BED32_20625 8cd4d32f7dfed7fa299d2e8dace1a15c 342 Gene3D G3DSA:3.40.50.850 1 184 4.2E-34 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_20625 8cd4d32f7dfed7fa299d2e8dace1a15c 342 Pfam PF00857 Isochorismatase family 4 141 2.2E-21 T 11-10-2018 IPR000868 Isochorismatase-like GO:0003824 BED32_20625 8cd4d32f7dfed7fa299d2e8dace1a15c 342 SUPERFAMILY SSF52499 2 180 1.7E-34 T 11-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 BED32_10005 7d0eae1de2229dad147aa8afd884e188 86 Pfam PF13518 Helix-turn-helix domain 16 55 2.0E-6 T 11-10-2018 BED32_10005 7d0eae1de2229dad147aa8afd884e188 86 SUPERFAMILY SSF48295 4 62 6.28E-14 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 BED32_04200 dd1aa424ed288b70bd123f9888873db0 96 Pfam PF17090 Uncharacterised protein family 31 94 1.5E-11 T 11-10-2018 IPR031381 Uncharacterised protein YtcA BED32_17055 a8d1f1ae55b283dd0e9a0dee4d5c5ce9 178 Pfam PF07963 Prokaryotic N-terminal methylation motif 19 40 1.7E-5 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_17055 a8d1f1ae55b283dd0e9a0dee4d5c5ce9 178 Gene3D G3DSA:3.30.700.10 25 150 1.4E-5 T 11-10-2018 BED32_17055 a8d1f1ae55b283dd0e9a0dee4d5c5ce9 178 SUPERFAMILY SSF54523 25 170 2.67E-12 T 11-10-2018 BED32_17055 a8d1f1ae55b283dd0e9a0dee4d5c5ce9 178 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 21 42 3.8E-4 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site BED32_14115 0433516eeecd8218bc3a0236a8038a6e 84 Pfam PF03692 Putative zinc- or iron-chelating domain 2 59 3.9E-5 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein BED32_07090 8fb15f70d83c605c98045bb1a7c3e962 374 Pfam PF11651 P22 coat protein - gene protein 5 69 265 7.7E-12 T 11-10-2018 IPR024659 Major capsid protein Gp5 BED32_04190 dcd9f4312103de00a82cc62a01702d1b 83 Pfam PF11903 ParD-like antitoxin of type II bacterial toxin-antitoxin system 1 63 1.8E-24 T 11-10-2018 IPR021831 ParD-like antitoxin of type II bacterial toxin-antitoxin system BED32_20755 7dfda7afe141a828058eea0a854dd052 190 Gene3D G3DSA:1.10.340.30 3 189 1.6E-87 T 11-10-2018 BED32_20755 7dfda7afe141a828058eea0a854dd052 190 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 4 183 1.3E-84 T 11-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 BED32_20755 7dfda7afe141a828058eea0a854dd052 190 SUPERFAMILY SSF48150 4 186 2.28E-81 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 BED32_20755 7dfda7afe141a828058eea0a854dd052 190 Pfam PF03352 Methyladenine glycosylase 8 184 7.8E-80 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 BED32_18860 047f7be37adb75fa97b1e0e12e877a50 331 Pfam PF01136 Peptidase family U32 76 330 9.3E-67 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BED32_18860 047f7be37adb75fa97b1e0e12e877a50 331 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BED32_18860 047f7be37adb75fa97b1e0e12e877a50 331 SUPERFAMILY SSF51391 11 160 3.66E-5 T 11-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 BED32_09440 57c1bb0cbeaee955cd3f5d0d41d2da16 177 Pfam PF10777 Inner membrane protein YlaC 1 153 2.3E-70 T 11-10-2018 IPR019713 Inner membrane protein YlaC BED32_02870 3c16d5fa325b2daffbc8a35ca0177b7e 244 Gene3D G3DSA:3.60.20.10 2 225 2.3E-29 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_02870 3c16d5fa325b2daffbc8a35ca0177b7e 244 PIRSF PIRSF009120 1 244 8.1E-109 T 11-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 BED32_02870 3c16d5fa325b2daffbc8a35ca0177b7e 244 SUPERFAMILY SSF56235 2 239 1.97E-37 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal BED32_02870 3c16d5fa325b2daffbc8a35ca0177b7e 244 Pfam PF00227 Proteasome subunit 4 185 2.7E-9 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 BED32_09670 6441017f5abd911c311650c3d48aa923 155 Pfam PF06891 P2 phage tail completion protein R (GpR) 1 130 2.3E-46 T 11-10-2018 IPR009678 Bacteriophage tail completion protein R BED32_03650 a89dc215e21d3acc5021ec2e36e6bca3 126 Pfam PF01478 Type IV leader peptidase family 4 94 1.0E-8 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 BED32_13100 2b0d42160ac424730dbe042bea68b273 273 SUPERFAMILY SSF53223 8 105 8.06E-26 T 11-10-2018 BED32_13100 2b0d42160ac424730dbe042bea68b273 273 Gene3D G3DSA:3.40.50.720 104 273 4.5E-36 T 11-10-2018 BED32_13100 2b0d42160ac424730dbe042bea68b273 273 Gene3D G3DSA:3.40.50.10860 4 103 2.3E-31 T 11-10-2018 BED32_13100 2b0d42160ac424730dbe042bea68b273 273 SUPERFAMILY SSF51735 106 266 1.13E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily BED32_13100 2b0d42160ac424730dbe042bea68b273 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 5.1E-16 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 BED32_16790 4222faeaaadd06d78a9fdb7bc746c851 104 PRINTS PR00605 Class IC cytochrome C signature 77 99 5.1E-6 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 BED32_16790 4222faeaaadd06d78a9fdb7bc746c851 104 PRINTS PR00605 Class IC cytochrome C signature 32 43 5.1E-6 T 11-10-2018 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 BED32_16790 4222faeaaadd06d78a9fdb7bc746c851 104 Pfam PF00034 Cytochrome c 32 103 1.4E-8 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 BED32_16790 4222faeaaadd06d78a9fdb7bc746c851 104 Gene3D G3DSA:1.10.760.10 21 104 4.8E-27 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_16790 4222faeaaadd06d78a9fdb7bc746c851 104 SUPERFAMILY SSF46626 6 103 3.95E-22 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 BED32_21100 77c448a7a5099908c1bb4d6576af67e7 243 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 118 241 5.5E-14 T 11-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 BED32_21100 77c448a7a5099908c1bb4d6576af67e7 243 Gene3D G3DSA:2.40.50.230 29 126 5.0E-19 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BED32_05150 64e31bfc1112c1cab52d2deae09b2628 113 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 6 105 4.4E-16 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD BED32_16980 e9f6220d2fe56d2c7f703ebcc6594872 146 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 3 141 1.3E-76 T 11-10-2018 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE BED32_16980 e9f6220d2fe56d2c7f703ebcc6594872 146 SUPERFAMILY SSF82649 3 144 6.28E-45 T 11-10-2018 BED32_16980 e9f6220d2fe56d2c7f703ebcc6594872 146 Pfam PF02657 Fe-S metabolism associated domain 19 138 5.2E-39 T 11-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like BED32_16980 e9f6220d2fe56d2c7f703ebcc6594872 146 Gene3D G3DSA:3.90.1010.10 1 144 2.0E-49 T 11-10-2018 BED32_03430 77cd561dda6c2b0ce65d5dfc9d431cdb 272 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 10 264 4.6E-97 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BED32_03430 77cd561dda6c2b0ce65d5dfc9d431cdb 272 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 5 271 18.021 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BED32_03430 77cd561dda6c2b0ce65d5dfc9d431cdb 272 Pfam PF02673 Bacitracin resistance protein BacA 10 265 1.0E-84 T 11-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 BED32_11985 8d2dfde08cfc30a4ecb2488581d36700 316 SMART SM00481 37 104 2.8E-18 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal BED32_11985 8d2dfde08cfc30a4ecb2488581d36700 316 Pfam PF02811 PHP domain 38 170 1.8E-8 T 11-10-2018 IPR004013 PHP domain GO:0003824 BED32_11985 8d2dfde08cfc30a4ecb2488581d36700 316 SUPERFAMILY SSF89550 36 309 1.49E-51 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 BED32_11985 8d2dfde08cfc30a4ecb2488581d36700 316 Gene3D G3DSA:1.10.150.650 132 203 1.8E-82 T 11-10-2018 BED32_11985 8d2dfde08cfc30a4ecb2488581d36700 316 Gene3D G3DSA:3.20.20.140 38 284 1.8E-82 T 11-10-2018 BED32_12795 165913706d16a9168e3debceb9d95312 79 Pfam PF10964 Protein of unknown function (DUF2766) 1 78 1.5E-47 T 11-10-2018 IPR020262 Uncharacterised protein family YecJ BED32_12795 165913706d16a9168e3debceb9d95312 79 ProDom PD060536 YECJ YPO1738 1 79 1.0E-36 T 11-10-2018 IPR020262 Uncharacterised protein family YecJ BED32_00915 c0507309abefef7eec71b62a69c128c2 344 Pfam PF00872 Transposase, Mutator family 5 317 3.7E-95 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_03260 cfe121f563a338cc3ea29d0eb776aafa 178 Pfam PF10688 Bacterial inner membrane protein 5 162 5.4E-52 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV BED32_03260 cfe121f563a338cc3ea29d0eb776aafa 178 PIRSF PIRSF011443 1 178 2.1E-61 T 11-10-2018 IPR026267 Inner membrane protein YgjV BED32_16420 386bb49a5cbdcd5fc446cea08d96d695 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 6.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_16420 386bb49a5cbdcd5fc446cea08d96d695 339 Pfam PF01548 Transposase 6 146 1.5E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_17340 967049a92985cf2123b1c5554a2632f1 272 Pfam PF03864 Phage major capsid protein E 5 268 6.1E-21 T 11-10-2018 IPR005564 Major capsid protein GpE BED32_12605 3c0b3809f28f2becd301973ae95a4ef2 113 Pfam PF10709 Protein of unknown function (DUF2511) 25 111 1.6E-42 T 11-10-2018 IPR019648 Protein of unknown function DUF2511 BED32_15340 05c5ac8cb6f8503fd4bbf649eb826ed9 255 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 10 250 29.328 T 11-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 BED32_15340 05c5ac8cb6f8503fd4bbf649eb826ed9 255 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 16 232 2.1E-43 T 11-10-2018 BED32_21510 b0fb8a22d1776a29fc973ba9311e102d 205 Pfam PF04519 Polymer-forming cytoskeletal 74 170 3.0E-18 T 11-10-2018 IPR007607 Bactofilin A/B BED32_16970 596b812dd775b3e7f857199b1f70c3aa 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 71 7.8E-26 T 11-10-2018 IPR010305 Protein of unknown function DUF903 BED32_16970 596b812dd775b3e7f857199b1f70c3aa 73 SUPERFAMILY SSF50182 21 71 8.18E-20 T 11-10-2018 IPR010920 LSM domain superfamily BED32_16970 596b812dd775b3e7f857199b1f70c3aa 73 Gene3D G3DSA:2.30.30.100 19 72 1.0E-28 T 11-10-2018 BED32_13580 e6d3297b33ca7337b99fee106c821b64 623 SUPERFAMILY SSF141523 383 541 4.58E-19 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like BED32_13580 e6d3297b33ca7337b99fee106c821b64 623 SUPERFAMILY SSF47090 319 363 4.87E-11 T 11-10-2018 IPR036365 PGBD-like superfamily BED32_13580 e6d3297b33ca7337b99fee106c821b64 623 Pfam PF03734 L,D-transpeptidase catalytic domain 382 551 6.6E-30 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 BED32_13580 e6d3297b33ca7337b99fee106c821b64 623 Pfam PF01471 Putative peptidoglycan binding domain 320 355 1.2E-7 T 11-10-2018 IPR002477 Peptidoglycan binding-like BED32_06995 ffefa1b2700b2138b483e22ab6eb052e 109 Pfam PF10765 Protein of unknown function (DUF2591) 3 102 3.1E-11 T 11-10-2018 IPR019701 Bacteriophage P22, NinX BED32_05570 b10870019498f8b7d52878690ccba536 236 Gene3D G3DSA:2.40.50.230 40 132 8.3E-9 T 11-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily BED32_05570 b10870019498f8b7d52878690ccba536 236 Pfam PF06890 Bacteriophage Mu Gp45 protein 150 215 2.2E-10 T 11-10-2018 IPR014462 Phage-associated protein Gp45 BED32_09585 fad59fdfc4bd4b182392ba1ca9657635 140 Pfam PF06366 Flagellar protein FlhE 35 140 3.5E-35 T 11-10-2018 IPR009420 Flagellar protein FlhE BED32_12445 57a96688544cdad8f1801d8af2d420c0 430 Pfam PF02687 FtsX-like permease family 335 419 4.1E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_07720 7701e120a1522b38f26dd3cb5b924c3f 243 Pfam PF06149 Protein of unknown function (DUF969) 7 224 7.0E-88 T 11-10-2018 IPR010374 Protein of unknown function DUF969 BED32_10605 4a20a9a06864b8e555c85dc2d03ab378 227 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 14 215 6.5E-37 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_10605 4a20a9a06864b8e555c85dc2d03ab378 227 Pfam PF01914 MarC family integral membrane protein 8 218 1.4E-63 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 BED32_12265 e1f00d3997ddd88153cffe8b392ced63 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 422 42.033 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 BED32_12265 e1f00d3997ddd88153cffe8b392ced63 424 Pfam PF04285 Protein of unknown function (DUF444) 4 420 3.5E-187 T 11-10-2018 IPR006698 Uncharacterised protein family UPF0229 BED32_20480 66713c119035df3fd3788b201cd65195 360 Pfam PF00953 Glycosyl transferase family 4 70 227 4.8E-27 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 BED32_20480 66713c119035df3fd3788b201cd65195 360 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 348 29.077 T 11-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 BED32_20480 66713c119035df3fd3788b201cd65195 360 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3 345 1.3E-164 T 11-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 BED32_02765 c411f44a8c97385a6d88ba2cc70383d5 278 Pfam PF14355 Abortive infection C-terminus 192 267 2.8E-21 T 11-10-2018 IPR026001 Abortive infection protein-like, C-terminal domain BED32_11085 be68362f9d5cddc7f1e9cd9ac5e59aba 75 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 2.8E-36 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 BED32_11085 be68362f9d5cddc7f1e9cd9ac5e59aba 75 Pfam PF06667 Phage shock protein B 4 74 1.0E-34 T 11-10-2018 IPR009554 Phage shock protein B GO:0006355|GO:0009271 BED32_18185 6aeb587b7c929229ea3c57fdec38280c 197 Pfam PF01184 GPR1/FUN34/yaaH family 3 181 8.8E-44 T 11-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 BED32_21920 0f25aa8a89fd0a884f338dfafe19cee0 195 Pfam PF09673 Type-F conjugative transfer system pilin assembly protein 54 175 8.2E-27 T 11-10-2018 IPR019106 Type-F conjugative transfer system pilin assembly protein TrbC BED32_02720 57607170e4e6301a516e0cb1de0e1c7e 110 Pfam PF10761 Protein of unknown function (DUF2590) 7 105 1.8E-45 T 11-10-2018 IPR019697 Bacteriophage HP1, Orf28 BED32_17090 b61b6f737454615137d0950511c03eff 238 Pfam PF03741 Integral membrane protein TerC family 16 202 7.0E-54 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 BED32_00145 a56074a992e13c22450e3ebebc836e18 147 Pfam PF07057 DNA helicase TraI 1 119 9.1E-50 T 11-10-2018 IPR009767 DNA helicase, TraI type GO:0000746|GO:0003677|GO:0003678|GO:0005524|GO:0016818 BED32_07080 3dbda1427ebe63ce2e328b3f2363a3f6 445 Pfam PF13264 Domain of unknown function (DUF4055) 230 365 1.8E-41 T 11-10-2018 IPR025129 Domain of unknown function DUF4055 BED32_21880 fe3875058dec38c8c05b51408b8ec759 216 Pfam PF05309 TraE protein 31 141 8.4E-16 T 11-10-2018 IPR007973 Pilus assembly TraE GO:0000746 BED32_08100 ebd94de4dfc272d52cba15ea00854a2b 113 Pfam PF01844 HNH endonuclease 27 75 3.0E-10 T 11-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 BED32_08100 ebd94de4dfc272d52cba15ea00854a2b 113 SMART SM00507 15 70 5.6E-4 T 11-10-2018 IPR003615 HNH nuclease BED32_03505 673df353269cc7287c091be5ca03a357 141 Pfam PF06853 Protein of unknown function (DUF1249) 22 135 2.7E-40 T 11-10-2018 IPR009659 Protein of unknown function DUF1249 BED32_04700 cf4ceb062de942a3fbbebcb8805a07d3 270 Gene3D G3DSA:2.60.40.1090 157 270 5.5E-7 T 11-10-2018 IPR036937 Fimbrial-type adhesion domain superfamily GO:0007155|GO:0009289 BED32_10075 9e615e5564433b07c7ebafe986a20e3e 291 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 35 289 1.3E-92 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 BED32_13285 aac020fc315c326d30f098e95ef03e7d 967 Gene3D G3DSA:2.180.10.10 5 676 4.2E-203 T 11-10-2018 BED32_13285 aac020fc315c326d30f098e95ef03e7d 967 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 597 676 5.1E-24 T 11-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 BED32_15130 30b5ee856ff8527c567ae952b4748f0c 313 Pfam PF02470 MlaD protein 48 114 6.3E-11 T 11-10-2018 IPR003399 Mce/MlaD BED32_07000 a161881ff618a267d096b67c18dec97c 219 ProSitePatterns PS00125 Serine/threonine specific protein phosphatases signature. 73 78 - T 11-10-2018 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase GO:0016787 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 BED32_07000 a161881ff618a267d096b67c18dec97c 219 SUPERFAMILY SSF56300 12 218 2.13E-45 T 11-10-2018 BED32_07000 a161881ff618a267d096b67c18dec97c 219 Gene3D G3DSA:3.60.21.10 3 219 2.7E-64 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like BED32_07000 a161881ff618a267d096b67c18dec97c 219 Pfam PF00149 Calcineurin-like phosphoesterase 15 197 3.7E-15 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 BED32_02570 87ca108e03945455a08d18339c374919 651 Hamap MF_01545 p-hydroxybenzoic acid efflux pump subunit AaeB [aaeB]. 1 651 56.02 T 11-10-2018 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB GO:0005886|GO:0046942 BED32_02570 87ca108e03945455a08d18339c374919 651 Pfam PF04632 Fusaric acid resistance protein family 8 649 1.4E-170 T 11-10-2018 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0022857|GO:0055085 BED32_05525 21d8196e7db40be7f046927a07fd1480 495 Pfam PF11863 Protein of unknown function (DUF3383) 7 492 8.9E-101 T 11-10-2018 IPR021808 Protein of unknown function DUF3383 BED32_12780 3cb80296b74c51d6e91534ad3c9139bf 99 Pfam PF10765 Protein of unknown function (DUF2591) 29 97 1.8E-13 T 11-10-2018 IPR019701 Bacteriophage P22, NinX BED32_00405 ee4189bf9d2f7baf0f5ce2fa3d78a616 154 Pfam PF07321 Type III secretion protein YscO 2 150 4.2E-48 T 11-10-2018 IPR009929 Type III secretion sytem,YscO BED32_05580 057113002f7231ef5851c95fb60d847a 413 Pfam PF04865 Baseplate J-like protein 94 341 7.5E-10 T 11-10-2018 IPR006949 Baseplate protein J-like BED32_18610 0333edd06878c5edeacb276be557bcbf 220 Pfam PF06551 Protein of unknown function (DUF1120) 34 106 3.5E-4 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 BED32_14260 0333edd06878c5edeacb276be557bcbf 220 Pfam PF06551 Protein of unknown function (DUF1120) 34 106 3.5E-4 T 11-10-2018 IPR010546 Protein of unknown function DUF1120 BED32_05800 227908794129cc9fd3fa0a40c2c3ba7f 256 SUPERFAMILY SSF53335 12 248 1.53E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase BED32_05800 227908794129cc9fd3fa0a40c2c3ba7f 256 Pfam PF08241 Methyltransferase domain 50 146 1.5E-25 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 BED32_05800 227908794129cc9fd3fa0a40c2c3ba7f 256 Gene3D G3DSA:3.40.50.150 26 255 4.7E-57 T 11-10-2018 BED32_03575 4c9752c9b7caba7a9c8d71139c09bb6f 220 Pfam PF09335 SNARE associated Golgi protein 48 172 3.9E-17 T 11-10-2018 IPR032816 SNARE associated Golgi protein BED32_01500 1f13cac1f4777a7477cd2c503586fa6f 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_01500 1f13cac1f4777a7477cd2c503586fa6f 339 Pfam PF01548 Transposase 6 146 4.7E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_18170 ddf7aa769999b4a0ba078e23c2098580 389 Gene3D G3DSA:1.20.1530.10 1 384 1.2E-155 T 11-10-2018 IPR023171 Na/H antiporter domain superfamily BED32_18170 ddf7aa769999b4a0ba078e23c2098580 389 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 2 386 23.675 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 BED32_18170 ddf7aa769999b4a0ba078e23c2098580 389 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 5 377 7.8E-174 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 BED32_18170 ddf7aa769999b4a0ba078e23c2098580 389 Pfam PF06965 Na+/H+ antiporter 1 4 377 3.0E-151 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 BED32_11705 b38d09e7be608e5a632c3bcc9bb4b9ab 202 Pfam PF05766 Bacteriophage Lambda NinG protein 4 196 3.4E-73 T 11-10-2018 IPR008713 Bacteriophage lambda NinG BED32_05470 564ec31463ffda37f60ccf9c7aab3850 489 Pfam PF06381 Protein of unknown function (DUF1073) 66 429 6.3E-103 T 11-10-2018 IPR024459 Protein of unknown function DUF1073 BED32_01820 eef14dfd289fac9566b9c5ffffeb099b 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 27 153 7.0E-63 T 11-10-2018 IPR013559 YheO-like BED32_01820 eef14dfd289fac9566b9c5ffffeb099b 240 Pfam PF08348 YheO-like PAS domain 29 137 1.1E-36 T 11-10-2018 IPR013559 YheO-like BED32_01820 eef14dfd289fac9566b9c5ffffeb099b 240 Pfam PF13309 HTH domain 171 228 3.2E-19 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 194 228 6100.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 841 873 5100.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1052 1074 2800.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1405 1436 6900.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 400 420 7000.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1006 1027 7400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1466 1490 630.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 251 282 1900.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1174 1198 500.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 896 920 3400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 314 338 3300.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1219 1243 2400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1259 1290 6900.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 121 142 660.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1320 1344 650.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1495 1536 1900.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_05630 7f219cd7740515870af9a39fd9997e37 1700 SMART SM00710 1365 1389 2400.0 T 11-10-2018 IPR006626 Parallel beta-helix repeat BED32_20345 a175b85b2f97062d1e613aba264e6539 234 Pfam PF04340 Protein of unknown function, DUF484 13 231 1.8E-73 T 11-10-2018 IPR007435 Protein of unknown function DUF484 BED32_20345 a175b85b2f97062d1e613aba264e6539 234 Gene3D G3DSA:3.30.450.40 48 232 2.6E-35 T 11-10-2018 IPR029016 GAF-like domain superfamily BED32_18595 f26eb0b2c9c342beb11a213fc6bcdb95 110 Gene3D G3DSA:3.40.50.1820 3 104 2.8E-23 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold BED32_13290 9bd70adc08dddcd382a242cec397a2ee 144 Pfam PF07681 DoxX 20 98 2.8E-17 T 11-10-2018 IPR032808 DoxX family BED32_13715 5abe72f174b943b4bab3a2622c00f1cd 344 Pfam PF00872 Transposase, Mutator family 5 317 2.2E-95 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_02655 4e569142ed859cae4f12e8e847ce6dee 285 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 9 245 1.3E-39 T 11-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 BED32_01600 99fb6268fe59904cb83a1874eacd6e32 182 Pfam PF05137 Fimbrial assembly protein (PilN) 101 164 1.4E-10 T 11-10-2018 IPR007813 Fimbrial assembly PilN BED32_19355 3172c9ed2bef00d05ea743cdaf6ea264 184 Pfam PF04186 FxsA cytoplasmic membrane protein 17 118 1.5E-32 T 11-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 BED32_08110 98f9df23615dbb3a979adc2f65f549d6 82 Pfam PF04226 Transglycosylase associated protein 33 81 3.4E-15 T 11-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 BED32_13805 61e58d6c9d7d3b8bf3a7f8967f53e471 327 Pfam PF04393 Protein of unknown function (DUF535) 33 311 1.4E-102 T 11-10-2018 IPR007488 Protein of unknown function DUF535 BED32_12310 3f815413910255be6dee890fd116228b 511 Pfam PF04293 SpoVR like protein 20 451 1.6E-175 T 11-10-2018 IPR007390 Sporulation stage V, protein R BED32_03215 3f4139de22b383fc546c1e5eed42548d 128 Pfam PF06476 Protein of unknown function (DUF1090) 15 123 2.6E-37 T 11-10-2018 IPR009468 Protein of unknown function DUF1090 BED32_18415 0e86cde0de3b172cc4367bc7c9af147e 91 Pfam PF07256 Protein of unknown function (DUF1435) 18 90 3.7E-31 T 11-10-2018 IPR009885 Protein of unknown function DUF1435 BED32_18415 0e86cde0de3b172cc4367bc7c9af147e 91 ProDom PD058594 MEMBRANE INNER C5447 MAJOR ECS5328 THE SUPERFAMILY PERMEASES STY4905 YJJZ 17 71 8.0E-22 T 11-10-2018 IPR009885 Protein of unknown function DUF1435 BED32_20720 f542bc7f113d4bc279dbdd39b8302834 203 Pfam PF01810 LysE type translocator 12 195 3.8E-13 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 BED32_15050 49c70bb5e9507e5d04ce4a2909fc648b 173 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase 10 139 1.6E-41 T 11-10-2018 IPR009228 Capsid scaffolding protein GpO GO:0019069 BED32_13230 11a8730a2c929309508b5cd96523cc53 84 ProDom PD060858 YCEP CYTOPLASMIC STY1199 ESCHERICHIA COLI SIMILAR ECS1438 1 84 3.0E-39 T 11-10-2018 IPR025730 Biofilm regulator BssS BED32_13230 11a8730a2c929309508b5cd96523cc53 84 Pfam PF13991 BssS protein family 11 80 2.0E-38 T 11-10-2018 IPR025730 Biofilm regulator BssS BED32_08430 92cca79ab1e62ffdd2b7e3fe593b9fd3 388 Pfam PF04235 Protein of unknown function (DUF418) 216 374 2.1E-46 T 11-10-2018 IPR007349 Domain of unknown function DUF418 BED32_11110 2afa0c5c16c7b077020ca48881b67aaa 152 SMART SM00953 15 140 1.2E-29 T 11-10-2018 IPR014914 RES domain BED32_11110 2afa0c5c16c7b077020ca48881b67aaa 152 Pfam PF08808 RES domain 3 148 3.3E-25 T 11-10-2018 IPR014914 RES domain BED32_16550 ac17cb67b617e9a5203ec773a20b3d6d 112 Pfam PF04899 MbeD/MobD like 3 61 1.2E-8 T 11-10-2018 IPR006983 MbeD/MobD-like BED32_02665 63747cc8ecd1ff232e1650ced6398dcf 232 Pfam PF05944 Phage small terminase subunit 36 164 7.2E-40 T 11-10-2018 IPR010270 Bacteriophage P2, GpM GO:0003677|GO:0004519|GO:0019069 BED32_11820 c587085e768438d493f9ff501e3e8c10 272 Pfam PF12684 PDDEXK-like domain of unknown function (DUF3799) 21 254 2.9E-27 T 11-10-2018 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain BED32_14320 436244d214d39c23c2c8419c8a9d0ce3 159 Pfam PF06530 Phage antitermination protein Q 20 140 2.0E-38 T 11-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 BED32_06990 b75a171263a4d3de76660b31d4f856a8 127 SMART SM00507 6 65 3.7E-6 T 11-10-2018 IPR003615 HNH nuclease BED32_06990 b75a171263a4d3de76660b31d4f856a8 127 Pfam PF01844 HNH endonuclease 19 68 2.2E-6 T 11-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 BED32_06990 b75a171263a4d3de76660b31d4f856a8 127 Gene3D G3DSA:3.30.40.60 1 91 1.2E-13 T 11-10-2018 BED32_14570 e93bd49e8d0a1ed642c8a8bdca507fdd 181 Gene3D G3DSA:1.20.120.1200 1 159 7.3E-48 T 11-10-2018 BED32_14570 e93bd49e8d0a1ed642c8a8bdca507fdd 181 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 157 8.1E-34 T 11-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_18605 0efc864215ced54c3c7c232d309b8a84 400 Pfam PF00872 Transposase, Mutator family 10 373 5.2E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_10680 2d9baede5ff2b1e9107385b6fc6e0c4a 164 Pfam PF10697 Protein of unknown function (DUF2502) 23 100 9.7E-31 T 11-10-2018 IPR019638 Protein of unknown function DUF2502 BED32_04105 e65d7cfa4c31fca77f4ee83c3170b7eb 188 Gene3D G3DSA:2.60.40.3700 27 187 1.8E-61 T 11-10-2018 BED32_14895 3e30f1a9235596c923bbe9dbe4a903d7 180 Pfam PF04315 Elongation factor P hydroxylase 11 167 2.8E-79 T 11-10-2018 IPR007411 Elongation factor P hydroxylase BED32_17580 fffdd43329fdaab2253eb8a9905aa94f 204 Pfam PF03458 UPF0126 domain 4 78 1.0E-22 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 BED32_17580 fffdd43329fdaab2253eb8a9905aa94f 204 Pfam PF03458 UPF0126 domain 92 161 2.7E-19 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 BED32_14495 7e3a5769e1a2e6b4b3aa917f2ba802d2 102 Pfam PF05957 Bacterial protein of unknown function (DUF883) 10 102 7.6E-31 T 11-10-2018 IPR010279 Inner membrane protein YqjD/ElaB GO:0043022 BED32_02695 4d922128d7625518c7ad11a0615e6f79 96 Pfam PF04550 Phage holin family 2 1 86 3.5E-37 T 11-10-2018 IPR007633 Bacteriophage P2, GpY, holin BED32_17095 e70d3e21bd52d1d79bd37939f52804dc 346 SUPERFAMILY SSF51430 1 344 9.69E-107 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_17095 e70d3e21bd52d1d79bd37939f52804dc 346 Pfam PF00248 Aldo/keto reductase family 16 337 9.0E-73 T 11-10-2018 IPR023210 NADP-dependent oxidoreductase domain BED32_17095 e70d3e21bd52d1d79bd37939f52804dc 346 Gene3D G3DSA:3.20.20.100 1 346 8.5E-138 T 11-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily BED32_07010 a4587e604ae1e918d63356edfc1f9831 211 Pfam PF05766 Bacteriophage Lambda NinG protein 4 201 6.0E-52 T 11-10-2018 IPR008713 Bacteriophage lambda NinG BED32_08510 8ef3c438427a2f71d58b7d4f5dafa6c1 317 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 203 216 - T 11-10-2018 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_08510 8ef3c438427a2f71d58b7d4f5dafa6c1 317 Pfam PF00146 NADH dehydrogenase 19 311 2.0E-51 T 11-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 BED32_06050 82b2c1499399a5175f2b045967364b23 259 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 34 259 2.1E-51 T 11-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 BED32_06050 82b2c1499399a5175f2b045967364b23 259 SUPERFAMILY SSF111364 26 259 2.75E-33 T 11-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 BED32_10105 8e7f3ec7ad385200a97bd049c90c3b7c 339 Pfam PF02371 Transposase IS116/IS110/IS902 family 211 287 3.3E-26 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_10105 8e7f3ec7ad385200a97bd049c90c3b7c 339 Pfam PF01548 Transposase 6 146 8.2E-15 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_07580 990186f6db6ce5f2f038baa2bbb16bc3 108 Pfam PF13982 YbfN-like lipoprotein 22 108 2.1E-46 T 11-10-2018 IPR025727 YbfN-like lipoprotein BED32_12895 47d6dea8daac9efc67a6c107408657bf 94 Gene3D G3DSA:3.60.60.10 1 93 6.7E-10 T 11-10-2018 BED32_17225 1db24b8d688d5eb7d4d8b13cd90c9c74 138 Gene3D G3DSA:1.10.10.10 23 121 1.0E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_17225 1db24b8d688d5eb7d4d8b13cd90c9c74 138 SUPERFAMILY SSF46894 43 118 9.35E-6 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 BED32_16960 5b99d7f910c12f69d5cd2523d868074f 126 Pfam PF04241 Protein of unknown function (DUF423) 15 101 4.4E-24 T 11-10-2018 IPR006696 Protein of unknown function DUF423 BED32_00500 7a7605fa766f480c3869089751c8d1c8 112 Pfam PF07119 Protein of unknown function (DUF1375) 13 76 1.3E-15 T 11-10-2018 IPR010780 Protein of unknown function DUF1375 BED32_03285 149fb9ff8750afa21008a2b4e17e1ab1 167 Gene3D G3DSA:3.30.2010.10 56 161 2.8E-7 T 11-10-2018 BED32_03285 149fb9ff8750afa21008a2b4e17e1ab1 167 Pfam PF01863 Protein of unknown function DUF45 32 149 5.8E-11 T 11-10-2018 IPR002725 Protein of unknown function DUF45 BED32_18725 1da1a02c2dc172996ba872904c46f847 367 Pfam PF15984 Bacterial collagen, middle region 112 295 1.7E-40 T 11-10-2018 IPR031929 Bacterial collagen-like protein, middle domain BED32_14745 0f835d951981e6f1e9314c56ae2b29db 169 Pfam PF02674 Colicin V production protein 4 142 9.0E-36 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 BED32_04660 e46d41c3d02ecc96a998bd633c5418c0 87 Pfam PF04703 FaeA-like protein 38 71 3.0E-4 T 11-10-2018 IPR006793 FaeA-like protein GO:0006355|GO:0009289 BED32_04660 e46d41c3d02ecc96a998bd633c5418c0 87 Gene3D G3DSA:1.10.10.10 24 81 3.0E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily BED32_07185 fe53a1f1670ae46f5c43ec064e50e1db 356 Pfam PF04865 Baseplate J-like protein 49 314 4.9E-29 T 11-10-2018 IPR006949 Baseplate protein J-like BED32_01020 4e5d07b0d7bb4494dbbb44a3144ba190 63 Pfam PF10945 Cellulose biosynthesis protein BcsR 17 57 1.1E-22 T 11-10-2018 IPR024487 Protein YhjR BED32_01020 4e5d07b0d7bb4494dbbb44a3144ba190 63 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 17 58 9.0E-9 T 11-10-2018 IPR024487 Protein YhjR BED32_10130 aa09fe7b93bdcef9a1ff2916c14835df 120 Pfam PF01548 Transposase 7 114 7.9E-12 T 11-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 BED32_06800 6602cb3e4775be396f5a5a738a7d70bb 378 Pfam PF04865 Baseplate J-like protein 66 340 7.8E-74 T 11-10-2018 IPR006949 Baseplate protein J-like BED32_19130 48efb1e803d78a6f159f9d615128095a 150 Pfam PF12582 Protein of unknown function (DUF3757) 19 142 5.9E-32 T 11-10-2018 IPR022231 Protein of unknown function DUF3757 BED32_19525 3878c6be31007d188c50955322cd222a 400 Pfam PF04143 Sulphur transport 233 390 1.3E-25 T 11-10-2018 IPR007272 Sulphur transport domain BED32_19525 3878c6be31007d188c50955322cd222a 400 Pfam PF04143 Sulphur transport 3 156 3.0E-24 T 11-10-2018 IPR007272 Sulphur transport domain BED32_08305 614637b437816bc4ea2b488189c2fb4e 221 Pfam PF10099 Anti-sigma-K factor rskA 61 216 1.7E-23 T 11-10-2018 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 BED32_11530 bb08fb74cfbd749127bf3f21649aca20 147 Pfam PF10754 Protein of unknown function (DUF2569) 7 145 1.3E-45 T 11-10-2018 IPR019690 Protein of unknown function DUF2569 BED32_07665 fe1de52ab46c6c6298d883e3f7035aa8 68 Pfam PF10725 Protein of unknown function (DUF2517) 4 63 2.6E-38 T 11-10-2018 IPR019663 Uncharacterised protein YbfA BED32_19590 73ad488fef7a037b35e214e46262bdee 197 Pfam PF13327 Type III secretion system subunit 10 171 1.5E-57 T 11-10-2018 IPR025292 Type III secretion system protein BED32_03605 cc35d2620818a69637537f3694270adf 154 Pfam PF07811 TadE-like protein 14 55 4.5E-5 T 11-10-2018 IPR012495 TadE-like BED32_00850 73ea5160f12cdf110497d909d28a4485 119 Pfam PF06530 Phage antitermination protein Q 3 118 2.6E-29 T 11-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 BED32_13245 2e1f4d2fac21beb09d2255700adec1e6 353 Pfam PF01594 AI-2E family transporter 14 327 1.7E-70 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like BED32_05040 0f28a17f1264bb3ac73fe1145acdbdce 243 Gene3D G3DSA:3.60.140.10 1 243 4.0E-91 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily BED32_05040 0f28a17f1264bb3ac73fe1145acdbdce 243 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 20 241 9.9E-74 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BED32_05040 0f28a17f1264bb3ac73fe1145acdbdce 243 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 26 242 1.6E-65 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase BED32_05040 0f28a17f1264bb3ac73fe1145acdbdce 243 SUPERFAMILY SSF64438 3 242 3.85E-86 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic BED32_18865 3f1ac3bff3866a2de7f3428de7796d43 292 Pfam PF01136 Peptidase family U32 92 261 9.0E-12 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 BED32_03600 299f4a9dc1ae357441f30e91031e85cf 192 Pfam PF16964 Putative tight adherence pilin protein F 9 192 1.1E-42 T 11-10-2018 IPR031582 Putative tight adherence pilin protein F BED32_02395 c4b2a46e9f8568faecdb7b9e772d66f2 156 Pfam PF05433 Glycine zipper 2TM domain 62 102 8.5E-6 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 BED32_15110 dfa10eaaefea6d94839259aa605a8f0d 184 Pfam PF01292 Prokaryotic cytochrome b561 10 180 1.5E-25 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 BED32_15110 dfa10eaaefea6d94839259aa605a8f0d 184 SUPERFAMILY SSF81342 5 180 1.49E-37 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 BED32_06745 234becbc705c12a09076ac8dda6cd0b0 114 Gene3D G3DSA:2.40.10.180 11 114 8.8E-6 T 11-10-2018 BED32_01530 58aeb3c2185d25e90ce7e19d6dc5b673 326 Gene3D G3DSA:1.20.910.10 93 276 3.5E-13 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 BED32_11865 3a7e61ebb24698ef51c6d9133aa83866 82 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 4 77 2.0E-25 T 11-10-2018 IPR018680 Protein of unknown function DUF2164 BED32_02710 63c491544a92a394316b0b89f7f508f0 88 ProDom PD068655 ORF26 3'REGION LYS GENE PRECURSOR ORF30 SIGNAL PHAGE 7 87 5.0E-27 T 11-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 BED32_02710 63c491544a92a394316b0b89f7f508f0 88 Pfam PF10963 Phage tail assembly chaperone 7 88 2.3E-32 T 11-10-2018 IPR024406 Phage tail assembly chaperone TAC-10 BED32_04970 8c33c1bc88aec09d6d673ddd93a4cd81 263 Pfam PF01578 Cytochrome C assembly protein 37 261 1.6E-42 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 BED32_17845 19a4835e0227b89ce26f79d2bd9c5b3d 174 Pfam PF05258 Protein of unknown function (DUF721) 26 98 1.2E-13 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 BED32_19920 9d8011e8609d03b5ebdc40796516bc31 185 Pfam PF02371 Transposase IS116/IS110/IS902 family 62 137 6.9E-22 T 11-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 BED32_17220 5b556522e00bd21e1904354a7be46454 150 Gene3D G3DSA:2.30.30.830 86 149 4.4E-15 T 11-10-2018 BED32_17220 5b556522e00bd21e1904354a7be46454 150 Pfam PF11356 Type II secretion system protein C 64 147 1.7E-13 T 11-10-2018 IPR024961 Type II secretion system protein C, N-terminal BED32_11185 f030131eadf77bbe4181906579569c97 879 Pfam PF11739 Dicarboxylate transport 660 861 6.0E-63 T 11-10-2018 IPR021730 Dicarboxylate transport BED32_20535 fc1dc4c175ba591a3925cb9948ed2dd7 363 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 74 300 4.3E-27 T 11-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system BED32_21160 4dbadf68ad0484dfa2cbbd7213f246f1 205 Pfam PF03458 UPF0126 domain 91 164 2.4E-20 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 BED32_21160 4dbadf68ad0484dfa2cbbd7213f246f1 205 Pfam PF03458 UPF0126 domain 5 79 4.0E-19 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 BED32_06765 3b1e4b0f79dd4cb2023e00826ad94819 124 Pfam PF10618 Phage tail tube protein 6 119 2.5E-40 T 11-10-2018 IPR019596 Bacteriophage Mu, GpM, tail tube BED32_03465 257c26bb8be01a02ae2e7bea0bc035e3 93 Pfam PF04380 Membrane fusogenic activity 1 78 1.7E-27 T 11-10-2018 IPR007475 Membrane fusogenic activity BED32_09730 d2ff839142cc3da7f2037ab8e5357373 138 Pfam PF06530 Phage antitermination protein Q 15 137 6.7E-43 T 11-10-2018 IPR010534 Bacteriophage 933W, GpQ GO:0003677|GO:0060567 BED32_12465 67ce2331fd7079aac20c7f6fd500fc3c 172 Gene3D G3DSA:3.30.420.150 13 170 3.5E-9 T 11-10-2018 BED32_06440 810154c330999ec436642c3089a3840f 808 Pfam PF02687 FtsX-like permease family 714 799 4.6E-8 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 BED32_11210 a31efafe8248af19c33837cca8bbe1b2 109 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 13 101 2.5E-22 T 11-10-2018 IPR009241 Toxin HigB-like BED32_13505 065ff88f578090b35c071856f3d0998f 520 Pfam PF02470 MlaD protein 132 190 5.0E-6 T 11-10-2018 IPR003399 Mce/MlaD BED32_13505 065ff88f578090b35c071856f3d0998f 520 Pfam PF02470 MlaD protein 15 106 5.8E-12 T 11-10-2018 IPR003399 Mce/MlaD BED32_13505 065ff88f578090b35c071856f3d0998f 520 Pfam PF02470 MlaD protein 261 363 4.9E-13 T 11-10-2018 IPR003399 Mce/MlaD BED32_10535 731a12c8b3ae812caeab1b1f886b2db4 400 Pfam PF00872 Transposase, Mutator family 10 373 3.9E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_11295 a90aa4aa35ba6d013a55ee1b1295bb1a 158 Pfam PF04463 Protein of unknown function (DUF523) 1 137 3.8E-37 T 11-10-2018 IPR007553 Domain of unknown function DUF523 BED32_03355 5497d744342eb53fe32698c377904eca 403 Pfam PF00872 Transposase, Mutator family 11 376 5.2E-101 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_15260 66c75cd4fa5a029025e96ab03b580998 142 Pfam PF10697 Protein of unknown function (DUF2502) 44 131 2.7E-34 T 11-10-2018 IPR019638 Protein of unknown function DUF2502 BED32_09895 1c83b0cda2a175dcfc2188402c7bbd41 244 Pfam PF13988 Protein of unknown function (DUF4225) 58 222 1.3E-44 T 11-10-2018 IPR025320 Protein of unknown function DUF4225 BED32_21430 d113201c11992c8e3e3782981be5fe75 127 Pfam PF03899 ATP synthase I chain 13 109 4.7E-17 T 11-10-2018 IPR005598 ATP synthase protein I BED32_01610 b9fe58212560d2648b696d011fff4969 130 Pfam PF10748 Protein of unknown function (DUF2531) 34 110 3.7E-6 T 11-10-2018 IPR019684 HofP protein BED32_03325 fc5a800bb7ad2f3680784abaefaaa0e5 167 Pfam PF03729 Short repeat of unknown function (DUF308) 61 129 2.9E-9 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane BED32_03325 fc5a800bb7ad2f3680784abaefaaa0e5 167 Pfam PF03729 Short repeat of unknown function (DUF308) 3 74 1.1E-12 T 11-10-2018 IPR005325 Protein of unknown function DUF308, membrane BED32_17145 7d023e45ec3ce519ed2c4c3b110a85e6 214 SUPERFAMILY SSF52833 4 190 1.28E-27 T 11-10-2018 IPR036249 Thioredoxin-like superfamily BED32_17145 7d023e45ec3ce519ed2c4c3b110a85e6 214 Gene3D G3DSA:3.40.30.10 1 213 7.4E-46 T 11-10-2018 BED32_19465 c96c4568a45049e232613f24a86b5d26 79 Pfam PF06568 Domain of unknown function (DUF1127) 40 69 6.6E-9 T 11-10-2018 IPR009506 Protein of unknown function DUF1127 BED32_18545 28c84029117a9b0297b6fdd2f59833ac 414 Pfam PF04932 O-Antigen ligase 200 342 2.5E-17 T 11-10-2018 IPR007016 O-antigen ligase-related BED32_15320 fea8185ed881633b49b829250c528ca0 113 Pfam PF14282 FlxA-like protein 9 105 1.4E-21 T 11-10-2018 IPR025577 FlxA-like protein BED32_09675 c678c5a013573f8a7bec869ada3f3c6e 125 TIGRFAM TIGR03495 phage_LysB: phage lysis regulatory protein, LysB family 1 120 8.9E-44 T 11-10-2018 IPR020000 Bacteriophage P2, LysB BED32_08805 e76fac6881b7430781b51c0b7976b49f 327 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 306 2.3E-35 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 BED32_04285 cbdc54a4808798c6d29802661da295d6 249 Pfam PF01925 Sulfite exporter TauE/SafE 15 240 1.1E-32 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 BED32_06795 486c6c3cc020064dd0fba9d06730b375 145 Pfam PF07409 Phage protein GP46 30 141 1.3E-40 T 11-10-2018 IPR010877 Bacteriophage Mu, Gp46 BED32_02725 1e3120248bee7fcdf97abe401a9d029d 394 Pfam PF04865 Baseplate J-like protein 82 310 1.4E-25 T 11-10-2018 IPR006949 Baseplate protein J-like BED32_12545 2cee65ebb5a606d198905ef389822731 400 Pfam PF00872 Transposase, Mutator family 10 373 1.5E-102 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 BED32_02670 6f23ab00d79ae9bb8b77bfa170a73dc3 150 Pfam PF05926 Phage head completion protein (GPL) 14 150 1.3E-41 T 11-10-2018 IPR009225 Bacteriophage head completion protein GpL GO:0019069 BED32_20835 b5ed6151afab11fdc012bea7329ef53b 145 Pfam PF05656 Protein of unknown function (DUF805) 7 132 1.1E-20 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 BED32_21950 f5578873a3b10f44fbe1418766aa6ab7 305 SUPERFAMILY SSF47598 2 45 3.63E-7 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 BED32_05505 6667a4de59a082582e7da2dbee1f44fe 147 Pfam PF13262 Protein of unknown function (DUF4054) 11 118 1.3E-19 T 11-10-2018 IPR025127 Protein of unknown function DUF4054 BED32_09385 1910f3c819ad184bb390fa02fee5da42 213 Pfam PF06551 Protein of unknown function (DUF1120) 30 99 1.3E-7 T 11-10-2018 IPR010546 Protein of unknown function DUF1120