BED33_00010 PF10014 2OG-Fe dioxygenase BED33_00030 PF13358 DDE superfamily endonuclease BED33_00030 PF13384 Homeodomain-like domain BED33_00035 PF02543 Carbamoyltransferase BED33_00035 PF16861 BED33_00035 BED33_00040 PF00534 Glycosyl transferases group 1 BED33_00050 PF02734 DAK2 domain BED33_00055 PF02733 Dak1 domain BED33_00060 PF00465 Iron-containing alcohol dehydrogenase BED33_00065 PF00873 AcrB/AcrD/AcrF family BED33_00070 PF16576 BED33_00070 BED33_00075 PF02274 Amidinotransferase BED33_00085 PF04932 BED33_00085 BED33_00090 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED33_00095 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_00095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_00100 PF04198 Putative sugar-binding domain BED33_00105 PF00005 ABC transporter BED33_00110 PF02653 BED33_00110 BED33_00115 PF02653 BED33_00115 BED33_00120 PF13407 Periplasmic binding protein domain BED33_00125 PF01791 DeoC/LacD family aldolase BED33_00130 PF03992 Antibiotic biosynthesis monooxygenase BED33_00140 PF10696 BED33_00140 BED33_00145 PF00872 BED33_00145 BED33_00150 PF06551 BED33_00150 BED33_00155 PF01527 Transposase BED33_00175 PF03739 BED33_00175 BED33_00180 PF03739 BED33_00180 BED33_00185 PF00883 Cytosol aminopeptidase family, catalytic domain BED33_00185 PF02789 Cytosol aminopeptidase family, N-terminal domain BED33_00190 PF04364 DNA polymerase III chi subunit, HolC BED33_00195 PF00133 tRNA synthetases class I (I, L, M and V) BED33_00195 PF08264 Anticodon-binding domain of tRNA BED33_00195 PF10458 Valyl tRNA synthetase tRNA binding arm BED33_00200 PF00583 Acetyltransferase (GNAT) family BED33_00205 PF06877 Regulator of ribonuclease activity B BED33_00210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED33_00210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED33_00215 PF04074 Domain of unknown function (DUF386) BED33_00220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_00225 PF00528 Binding-protein-dependent transport system inner membrane component BED33_00230 PF00528 Binding-protein-dependent transport system inner membrane component BED33_00230 PF12911 BED33_00230 BED33_00235 PF00005 ABC transporter BED33_00240 PF00005 ABC transporter BED33_00245 PF03466 LysR substrate binding domain BED33_00255 PF13353 4Fe-4S single cluster domain BED33_00260 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED33_00260 PF08479 POTRA domain, ShlB-type BED33_00265 PF15984 BED33_00265 BED33_00270 PF00392 Bacterial regulatory proteins, gntR family BED33_00270 PF07702 UTRA domain BED33_00275 PF06754 BED33_00275 BED33_00280 PF05845 Bacterial phosphonate metabolism protein (PhnH) BED33_00285 PF05861 BED33_00285 BED33_00290 PF06007 BED33_00290 BED33_00295 PF00005 ABC transporter BED33_00300 PF00005 ABC transporter BED33_00305 PF07969 Amidohydrolase family BED33_00315 PF12706 Beta-lactamase superfamily domain BED33_00325 PF05016 Plasmid stabilisation system protein BED33_00330 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED33_00340 PF05426 Alginate lyase BED33_00345 PF00005 ABC transporter BED33_00345 PF08402 TOBE domain BED33_00350 PF00528 Binding-protein-dependent transport system inner membrane component BED33_00355 PF00528 Binding-protein-dependent transport system inner membrane component BED33_00360 PF01547 Bacterial extracellular solute-binding protein BED33_00365 PF05426 Alginate lyase BED33_00370 PF07940 Heparinase II/III-like protein BED33_00375 PF01276 Orn/Lys/Arg decarboxylase, major domain BED33_00375 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED33_00375 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED33_00380 PF13520 Amino acid permease BED33_00390 PF00583 Acetyltransferase (GNAT) family BED33_00395 PF02036 SCP-2 sterol transfer family BED33_00400 PF01136 BED33_00400 BED33_00405 PF01136 BED33_00405 BED33_00410 PF03313 BED33_00410 BED33_00420 PF02321 Outer membrane efflux protein BED33_00420 PF13533 Biotin-lipoyl like BED33_00425 PF00296 Luciferase-like monooxygenase BED33_00435 PF00270 DEAD/DEAH box helicase BED33_00435 PF00271 Helicase conserved C-terminal domain BED33_00435 PF03880 DbpA RNA binding domain BED33_00435 PF12343 BED33_00435 BED33_00440 PF07719 Tetratricopeptide repeat BED33_00440 PF13181 Tetratricopeptide repeat BED33_00445 PF00013 KH domain BED33_00445 PF00575 S1 RNA binding domain BED33_00445 PF01138 3' exoribonuclease family, domain 1 BED33_00445 PF03725 3' exoribonuclease family, domain 2 BED33_00445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BED33_00450 PF00312 Ribosomal protein S15 BED33_00455 PF01509 TruB family pseudouridylate synthase (N terminal domain) BED33_00455 PF09157 Pseudouridine synthase II TruB, C-terminal BED33_00455 PF16198 BED33_00455 BED33_00460 PF02033 Ribosome-binding factor A BED33_00465 PF00009 Elongation factor Tu GTP binding domain BED33_00465 PF03144 Elongation factor Tu domain 2 BED33_00465 PF04760 Translation initiation factor IF-2, N-terminal region BED33_00465 PF08364 BED33_00465 BED33_00465 PF11987 Translation-initiation factor 2 BED33_00470 PF08529 NusA N-terminal domain BED33_00470 PF13184 NusA-like KH domain BED33_00470 PF14520 Helix-hairpin-helix domain BED33_00475 PF02576 Uncharacterised BCR, YhbC family COG0779 BED33_00475 PF17384 BED33_00475 BED33_00490 PF03840 Preprotein translocase SecG subunit BED33_00495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED33_00495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED33_00495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED33_00495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED33_00500 PF00809 Pterin binding enzyme BED33_00505 PF00004 ATPase family associated with various cellular activities (AAA) BED33_00505 PF01434 Peptidase family M41 BED33_00505 PF06480 FtsH Extracellular BED33_00510 PF01728 FtsJ-like methyltransferase BED33_00515 PF01985 CRS1 / YhbY (CRM) domain BED33_00520 PF01272 Transcription elongation factor, GreA/GreB, C-term BED33_00520 PF03449 Transcription elongation factor, N-terminal BED33_00525 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BED33_00530 PF00072 Response regulator receiver domain BED33_00530 PF00486 Transcriptional regulatory protein, C terminal BED33_00535 PF00512 His Kinase A (phospho-acceptor) domain BED33_00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_00540 PF01018 GTP1/OBG BED33_00540 PF01926 50S ribosome-binding GTPase BED33_00545 PF00892 EamA-like transporter family BED33_00550 PF01016 Ribosomal L27 protein BED33_00555 PF00829 Ribosomal prokaryotic L21 protein BED33_00560 PF00348 Polyprenyl synthetase BED33_00565 PF02316 Mu DNA-binding domain BED33_00570 PF13693 Winged helix-turn-helix DNA-binding BED33_00575 PF00056 lactate/malate dehydrogenase, NAD binding domain BED33_00575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BED33_00580 PF01316 Arginine repressor, DNA binding domain BED33_00580 PF02863 Arginine repressor, C-terminal domain BED33_00585 PF07338 Protein of unknown function (DUF1471) BED33_00590 PF01225 Mur ligase family, catalytic domain BED33_00590 PF02875 Mur ligase family, glutamate ligase domain BED33_00590 PF08245 Mur ligase middle domain BED33_00595 PF00316 Fructose-1-6-bisphosphatase BED33_00600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_00600 PF02203 Tar ligand binding domain homologue BED33_00605 PF00719 Inorganic pyrophosphatase BED33_00610 PF06094 AIG2-like family BED33_00615 PF04357 BED33_00615 BED33_00620 PF01103 Surface antigen BED33_00620 PF07244 Surface antigen variable number repeat BED33_00620 PF17243 BED33_00620 BED33_00625 PF01625 Peptide methionine sulfoxide reductase BED33_00630 PF00571 CBS domain BED33_00630 PF01595 BED33_00630 BED33_00630 PF03471 Transporter associated domain BED33_00635 PF06526 Protein of unknown function (DUF1107) BED33_00640 PF09695 BED33_00640 BED33_00645 PF00459 Inositol monophosphatase family BED33_00650 PF00149 Calcineurin-like phosphoesterase BED33_00650 PF02872 5'-nucleotidase, C-terminal domain BED33_00660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED33_00660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED33_00665 PF04225 Opacity-associated protein A LysM-like domain BED33_00665 PF08525 BED33_00665 BED33_00670 PF12582 BED33_00670 BED33_00675 PF01281 Ribosomal protein L9, N-terminal domain BED33_00675 PF03948 Ribosomal protein L9, C-terminal domain BED33_00680 PF01084 Ribosomal protein S18 BED33_00685 PF00436 Single-strand binding protein family BED33_00690 PF01250 Ribosomal protein S6 BED33_00695 PF07338 Protein of unknown function (DUF1471) BED33_00700 PF00326 Prolyl oligopeptidase family BED33_00705 PF07338 Protein of unknown function (DUF1471) BED33_00710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED33_00715 PF01548 BED33_00715 BED33_00715 PF02371 BED33_00715 BED33_00720 PF00588 SpoU rRNA Methylase family BED33_00720 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED33_00725 PF00575 S1 RNA binding domain BED33_00725 PF00773 RNB domain BED33_00725 PF08206 Ribonuclease B OB domain BED33_00725 PF08461 Ribonuclease R winged-helix domain BED33_00730 PF02082 Transcriptional regulator BED33_00735 PF00709 Adenylosuccinate synthetase BED33_00740 PF09838 BED33_00740 BED33_00745 PF01145 SPFH domain / Band 7 family BED33_00750 PF01145 SPFH domain / Band 7 family BED33_00750 PF12221 BED33_00750 BED33_00755 PF01926 50S ribosome-binding GTPase BED33_00755 PF13167 BED33_00755 BED33_00755 PF16360 BED33_00755 BED33_00760 PF17209 BED33_00760 BED33_00765 PF01715 IPP transferase BED33_00770 PF01119 DNA mismatch repair protein, C-terminal domain BED33_00770 PF08676 MutL C terminal dimerisation domain BED33_00770 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_00775 PF01476 LysM domain BED33_00775 PF01520 N-acetylmuramoyl-L-alanine amidase BED33_00775 PF11741 AMIN domain BED33_00780 PF02367 Uncharacterised P-loop hydrolase UPF0079 BED33_00785 PF01256 Carbohydrate kinase BED33_00785 PF03853 YjeF-related protein N-terminus BED33_00790 PF08331 BED33_00790 BED33_00790 PF13484 BED33_00790 BED33_00805 PF00929 Exonuclease BED33_00810 PF03193 Protein of unknown function, DUF258 BED33_00815 PF02666 BED33_00815 BED33_00820 PF00924 Mechanosensitive ion channel BED33_00820 PF12794 BED33_00820 BED33_00820 PF12795 BED33_00820 BED33_00825 PF00152 tRNA synthetases class II (D, K and N) BED33_00830 PF00890 FAD binding domain BED33_00830 PF02910 Fumarate reductase flavoprotein C-term BED33_00835 PF13085 2Fe-2S iron-sulfur cluster binding domain BED33_00835 PF13183 4Fe-4S dicluster domain BED33_00840 PF02300 Fumarate reductase subunit C BED33_00845 PF02313 Fumarate reductase subunit D BED33_00850 PF08212 Lipocalin-like domain BED33_00855 PF00893 Small Multidrug Resistance protein BED33_00860 PF08085 BED33_00860 BED33_00865 PF01132 Elongation factor P (EF-P) OB domain BED33_00865 PF08207 Elongation factor P (EF-P) KOW-like domain BED33_00865 PF09285 Elongation factor P, C-terminal BED33_00870 PF04055 Radical SAM superfamily BED33_00870 PF13353 4Fe-4S single cluster domain BED33_00875 PF13698 BED33_00875 BED33_00885 PF00118 TCP-1/cpn60 chaperonin family BED33_00890 PF00166 Chaperonin 10 Kd subunit BED33_00895 PF04186 BED33_00895 BED33_00900 PF00206 Lyase BED33_00900 PF10415 Fumarase C C-terminus BED33_00905 PF03605 BED33_00905 BED33_00910 PF03091 CutA1 divalent ion tolerance protein BED33_00915 PF02683 BED33_00915 BED33_00915 PF11412 Disulphide bond corrector protein DsbC BED33_00915 PF13899 Thioredoxin-like BED33_00920 PF02595 Glycerate kinase family BED33_00925 PF00440 Bacterial regulatory proteins, tetR family BED33_00935 PF01228 Glycine radical BED33_00935 PF02901 Pyruvate formate lyase BED33_00940 PF00871 Acetokinase family BED33_00945 PF01490 BED33_00945 BED33_00950 PF00291 Pyridoxal-phosphate dependent enzyme BED33_00955 PF04055 Radical SAM superfamily BED33_00960 PF06228 Haem utilisation ChuX/HutX BED33_00965 PF13460 NADH(P)-binding BED33_00970 PF10636 Hemin uptake protein hemP BED33_00975 PF00593 TonB dependent receptor BED33_00975 PF07715 TonB-dependent Receptor Plug Domain BED33_00980 PF05171 Haemin-degrading HemS BED33_00985 PF01497 Periplasmic binding protein BED33_00990 PF01032 FecCD transport family BED33_00995 PF00005 ABC transporter BED33_01005 PF06568 BED33_01005 BED33_01010 PF00593 TonB dependent receptor BED33_01010 PF07715 TonB-dependent Receptor Plug Domain BED33_01025 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED33_01035 PF00005 ABC transporter BED33_01035 PF06472 BED33_01035 BED33_01040 PF07660 Secretin and TonB N terminus short domain BED33_01040 PF07715 TonB-dependent Receptor Plug Domain BED33_01045 PF04773 FecR protein BED33_01045 PF16220 BED33_01045 BED33_01050 PF04542 Sigma-70 region 2 BED33_01050 PF08281 Sigma-70, region 4 BED33_01055 PF03544 Gram-negative bacterial TonB protein C-terminal BED33_01060 PF01206 Sulfurtransferase TusA BED33_01065 PF04143 BED33_01065 BED33_01070 PF01312 FlhB HrpN YscU SpaS Family BED33_01075 PF01311 BED33_01075 BED33_01080 PF01313 BED33_01080 BED33_01085 PF00813 BED33_01085 BED33_01090 PF01052 Surface presentation of antigens (SPOA) BED33_01090 PF06622 BED33_01090 BED33_01110 PF00771 FHIPEP family BED33_01120 PF07201 HrpJ-like domain BED33_01120 PF09059 TyeA BED33_01130 PF13327 BED33_01130 BED33_01135 PF01514 Secretory protein of YscJ/FliF family BED33_01145 PF06287 BED33_01145 BED33_01150 PF09392 Type III secretion needle MxiH like BED33_01155 PF12833 Helix-turn-helix domain BED33_01170 PF09621 BED33_01170 BED33_01175 PF05802 BED33_01175 BED33_01180 PF04888 BED33_01180 BED33_01190 PF03433 EspA-like secreted protein BED33_01200 PF08988 Protein of unknown function (DUF1895) BED33_01205 PF16693 BED33_01205 BED33_01210 PF00263 BED33_01210 BED33_01210 PF03958 Bacterial type II/III secretion system short domain BED33_01225 PF00072 Response regulator receiver domain BED33_01225 PF00196 Bacterial regulatory proteins, luxR family BED33_01230 PF00375 Sodium:dicarboxylate symporter family BED33_01235 PF00501 AMP-binding enzyme BED33_01235 PF13193 AMP-binding enzyme C-terminal domain BED33_01235 PF16177 BED33_01235 BED33_01240 PF04341 BED33_01240 BED33_01245 PF00474 Sodium:solute symporter family BED33_01290 PF01808 AICARFT/IMPCHase bienzyme BED33_01290 PF02142 MGS-like domain BED33_01295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BED33_01295 PF02843 Phosphoribosylglycinamide synthetase, C domain BED33_01295 PF02844 Phosphoribosylglycinamide synthetase, N domain BED33_01300 PF07356 BED33_01300 BED33_01305 PF00216 Bacterial DNA-binding protein BED33_01310 PF04222 Protein of unknown function (DUF416) BED33_01315 PF04493 Endonuclease V BED33_01320 PF01208 Uroporphyrinogen decarboxylase (URO-D) BED33_01325 PF00293 NUDIX domain BED33_01325 PF09297 NADH pyrophosphatase zinc ribbon domain BED33_01330 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BED33_01335 PF01964 ThiC family BED33_01335 PF13667 ThiC-associated domain BED33_01340 PF02581 Thiamine monophosphate synthase/TENI BED33_01345 PF00899 ThiF family BED33_01350 PF02597 ThiS family BED33_01355 PF05690 Thiazole biosynthesis protein ThiG BED33_01360 PF04055 Radical SAM superfamily BED33_01360 PF06968 Biotin and Thiamin Synthesis associated domain BED33_01365 PF01548 BED33_01365 BED33_01365 PF02371 BED33_01365 BED33_01370 PF00623 RNA polymerase Rpb1, domain 2 BED33_01370 PF04983 RNA polymerase Rpb1, domain 3 BED33_01370 PF04997 RNA polymerase Rpb1, domain 1 BED33_01370 PF04998 RNA polymerase Rpb1, domain 5 BED33_01370 PF05000 RNA polymerase Rpb1, domain 4 BED33_01375 PF00562 RNA polymerase Rpb2, domain 6 BED33_01375 PF04560 RNA polymerase Rpb2, domain 7 BED33_01375 PF04561 RNA polymerase Rpb2, domain 2 BED33_01375 PF04563 RNA polymerase beta subunit BED33_01375 PF04565 RNA polymerase Rpb2, domain 3 BED33_01375 PF10385 RNA polymerase beta subunit external 1 domain BED33_01380 PF00542 Ribosomal protein L7/L12 C-terminal domain BED33_01380 PF16320 BED33_01380 BED33_01385 PF00466 Ribosomal protein L10 BED33_01390 PF00687 Ribosomal protein L1p/L10e family BED33_01395 PF00298 Ribosomal protein L11, RNA binding domain BED33_01395 PF03946 Ribosomal protein L11, N-terminal domain BED33_01400 PF00467 KOW motif BED33_01400 PF02357 Transcription termination factor nusG BED33_01405 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BED33_01410 PF00009 Elongation factor Tu GTP binding domain BED33_01410 PF03143 Elongation factor Tu C-terminal domain BED33_01410 PF03144 Elongation factor Tu domain 2 BED33_01445 PF00485 Phosphoribulokinase / Uridine kinase family BED33_01450 PF02237 Biotin protein ligase C terminal domain BED33_01450 PF03099 Biotin/lipoate A/B protein ligase family BED33_01450 PF08279 HTH domain BED33_01455 PF01565 FAD binding domain BED33_01455 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BED33_01460 PF02371 BED33_01460 BED33_01465 PF13518 Helix-turn-helix domain BED33_01490 PF12724 Flavodoxin domain BED33_01495 PF02386 Cation transport protein BED33_01500 PF01205 Uncharacterized protein family UPF0029 BED33_01500 PF09186 Domain of unknown function (DUF1949) BED33_01505 PF00557 Metallopeptidase family M24 BED33_01510 PF00378 Enoyl-CoA hydratase/isomerase family BED33_01510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED33_01510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED33_01515 PF00108 Thiolase, N-terminal domain BED33_01515 PF02803 Thiolase, C-terminal domain BED33_01520 PF00175 Oxidoreductase NAD-binding domain BED33_01520 PF00970 Oxidoreductase FAD-binding domain BED33_01525 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED33_01530 PF02357 Transcription termination factor nusG BED33_01535 PF00490 Delta-aminolevulinic acid dehydratase BED33_01540 PF01026 TatD related DNase BED33_01545 PF00902 Sec-independent protein translocase protein (TatC) BED33_01555 PF02416 mttA/Hcf106 family BED33_01560 PF03109 BED33_01560 BED33_01565 PF02036 SCP-2 sterol transfer family BED33_01570 PF01209 ubiE/COQ5 methyltransferase family BED33_01585 PF02554 BED33_01585 BED33_01585 PF13722 BED33_01585 BED33_01590 PF13350 Tyrosine phosphatase family BED33_01595 PF01048 Phosphorylase superfamily BED33_01600 PF01738 Dienelactone hydrolase family BED33_01605 PF01717 Cobalamin-independent synthase, Catalytic domain BED33_01605 PF08267 Cobalamin-independent synthase, N-terminal domain BED33_01610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_01610 PF03466 LysR substrate binding domain BED33_01615 PF00892 EamA-like transporter family BED33_01620 PF03547 BED33_01620 BED33_01625 PF03009 Glycerophosphoryl diester phosphodiesterase family BED33_01630 PF00005 ABC transporter BED33_01630 PF08402 TOBE domain BED33_01635 PF00528 Binding-protein-dependent transport system inner membrane component BED33_01640 PF00528 Binding-protein-dependent transport system inner membrane component BED33_01645 PF13416 Bacterial extracellular solute-binding protein BED33_01650 PF04449 CS1 type fimbrial major subunit BED33_01655 PF16967 BED33_01655 BED33_01660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_01680 PF00005 ABC transporter BED33_01685 PF00005 ABC transporter BED33_01685 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED33_01690 PF02653 BED33_01690 BED33_01690 PF11862 BED33_01690 BED33_01695 PF02653 BED33_01695 BED33_01700 PF13458 Periplasmic binding protein BED33_01705 PF12568 Acetyltransferase (GNAT) domain BED33_01720 PF00140 Sigma-70 factor, region 1 BED33_01720 PF04542 Sigma-70 region 2 BED33_01720 PF04545 Sigma-70, region 4 BED33_01725 PF02687 BED33_01725 BED33_01730 PF00005 ABC transporter BED33_01735 PF00448 SRP54-type protein, GTPase domain BED33_01735 PF02881 SRP54-type protein, helical bundle domain BED33_01740 PF03602 Conserved hypothetical protein 95 BED33_01745 PF06611 BED33_01745 BED33_01750 PF10694 Protein of unknown function (DUF2500) BED33_01755 PF08850 BED33_01755 BED33_01760 PF07947 BED33_01760 BED33_01765 PF00122 E1-E2 ATPase BED33_01765 PF00403 Heavy-metal-associated domain BED33_01765 PF00702 haloacid dehalogenase-like hydrolase BED33_01770 PF01206 Sulfurtransferase TusA BED33_01775 PF02592 BED33_01775 BED33_01780 PF08786 Domain of unknown function (DUF1795) BED33_01785 PF02754 BED33_01785 BED33_01785 PF13183 4Fe-4S dicluster domain BED33_01790 PF00890 FAD binding domain BED33_01795 PF01266 FAD dependent oxidoreductase BED33_01795 PF04324 BFD-like [2Fe-2S] binding domain BED33_01800 PF07690 Major Facilitator Superfamily BED33_01805 PF03009 Glycerophosphoryl diester phosphodiesterase family BED33_01810 PF08282 haloacid dehalogenase-like hydrolase BED33_01815 PF12146 Putative lysophospholipase BED33_01820 PF01810 BED33_01820 BED33_01825 PF01810 BED33_01825 BED33_01830 PF00270 DEAD/DEAH box helicase BED33_01830 PF00271 Helicase conserved C-terminal domain BED33_01830 PF00570 HRDC domain BED33_01830 PF09382 RQC domain BED33_01830 PF16124 BED33_01830 BED33_01835 PF02253 Phospholipase A1 BED33_01840 PF03061 Thioesterase superfamily BED33_01845 PF00892 EamA-like transporter family BED33_01850 PF01544 CorA-like Mg2+ transporter protein BED33_01855 PF09370 TIM-barrel signal transduction protein BED33_01860 PF06792 Uncharacterised protein family (UPF0261) BED33_01865 PF00440 Bacterial regulatory proteins, tetR family BED33_01870 PF00580 UvrD/REP helicase N-terminal domain BED33_01870 PF13361 UvrD-like helicase C-terminal domain BED33_01875 PF13419 Haloacid dehalogenase-like hydrolase BED33_01880 PF00589 Phage integrase family BED33_01880 PF02899 Phage integrase, N-terminal SAM-like domain BED33_01885 PF04340 Protein of unknown function, DUF484 BED33_01890 PF01678 Diaminopimelate epimerase BED33_01895 PF13627 BED33_01895 BED33_01900 PF01491 Frataxin-like domain BED33_01905 PF13454 FAD-NAD(P)-binding BED33_01910 PF01295 BED33_01910 BED33_01910 PF12633 BED33_01910 BED33_01915 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BED33_01915 PF03900 Porphobilinogen deaminase, C-terminal domain BED33_01920 PF02602 Uroporphyrinogen-III synthase HemD BED33_01925 PF04375 BED33_01925 BED33_01930 PF07219 BED33_01930 BED33_01935 PF01548 BED33_01935 BED33_01935 PF02371 BED33_01935 BED33_01965 PF03808 BED33_01965 BED33_01970 PF06899 BED33_01970 BED33_01975 PF07429 BED33_01975 BED33_01980 PF01943 BED33_01980 BED33_01985 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED33_01990 PF00583 Acetyltransferase (GNAT) family BED33_01995 PF00483 Nucleotidyl transferase BED33_02000 PF16363 BED33_02000 BED33_02005 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED33_02005 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED33_02005 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED33_02010 PF02350 UDP-N-acetylglucosamine 2-epimerase BED33_02015 PF02706 Chain length determinant protein BED33_02020 PF00953 Glycosyl transferase family 4 BED33_02025 PF01548 BED33_02025 BED33_02025 PF02371 BED33_02025 BED33_02030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_02030 PF07497 Rho termination factor, RNA-binding domain BED33_02030 PF07498 Rho termination factor, N-terminal domain BED33_02035 PF00085 Thioredoxin BED33_02040 PF00270 DEAD/DEAH box helicase BED33_02040 PF00271 Helicase conserved C-terminal domain BED33_02045 PF02541 Ppx/GppA phosphatase family BED33_02050 PF00295 Glycosyl hydrolases family 28 BED33_02055 PF00580 UvrD/REP helicase N-terminal domain BED33_02055 PF13361 UvrD-like helicase C-terminal domain BED33_02060 PF13616 PPIC-type PPIASE domain BED33_02070 PF13358 DDE superfamily endonuclease BED33_02070 PF13384 Homeodomain-like domain BED33_02075 PF08843 Nucleotidyl transferase of unknown function (DUF1814) BED33_02090 PF02661 Fic/DOC family BED33_02090 PF13784 Fic/DOC family N-terminal BED33_02095 PF03288 Poxvirus D5 protein-like BED33_02095 PF08273 Zinc-binding domain of primase-helicase BED33_02095 PF08706 BED33_02095 BED33_02095 PF13362 Toprim domain BED33_02100 PF05973 BED33_02100 BED33_02105 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED33_02125 PF00589 Phage integrase family BED33_02125 PF13356 Domain of unknown function (DUF4102) BED33_02130 PF12833 Helix-turn-helix domain BED33_02130 PF13377 Periplasmic binding protein-like domain BED33_02135 PF02653 BED33_02135 BED33_02140 PF00005 ABC transporter BED33_02145 PF13407 Periplasmic binding protein domain BED33_02155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_02155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_02160 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_02160 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_02165 PF00857 Isochorismatase family BED33_02170 PF01965 DJ-1/PfpI family BED33_02170 PF12833 Helix-turn-helix domain BED33_02175 PF01757 BED33_02175 BED33_02180 PF07690 Major Facilitator Superfamily BED33_02185 PF00009 Elongation factor Tu GTP binding domain BED33_02185 PF09106 Elongation factor SelB, winged helix BED33_02185 PF09107 Elongation factor SelB, winged helix BED33_02190 PF03841 L-seryl-tRNA selenium transferase BED33_02190 PF12390 BED33_02190 BED33_02195 PF04216 Protein involved in formate dehydrogenase formation BED33_02200 PF01292 Prokaryotic cytochrome b561 BED33_02205 PF09163 Formate dehydrogenase N, transmembrane BED33_02205 PF13247 4Fe-4S dicluster domain BED33_02210 PF00384 Molybdopterin oxidoreductase BED33_02210 PF01568 Molydopterin dinucleotide binding domain BED33_02215 PF00384 Molybdopterin oxidoreductase BED33_02215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED33_02220 PF02634 FdhD/NarQ family BED33_02225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED33_02225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED33_02230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_02230 PF00672 HAMP domain BED33_02230 PF16591 BED33_02230 BED33_02235 PF03473 MOSC domain BED33_02235 PF03475 3-alpha domain BED33_02240 PF01850 PIN domain BED33_02245 PF04014 Antidote-toxin recognition MazE BED33_02250 PF10928 Protein of unknown function (DUF2810) BED33_02255 PF00155 Aminotransferase class I and II BED33_02255 PF00392 Bacterial regulatory proteins, gntR family BED33_02260 PF01810 BED33_02260 BED33_02265 PF05068 Mannitol repressor BED33_02270 PF01232 Mannitol dehydrogenase Rossmann domain BED33_02270 PF08125 Mannitol dehydrogenase C-terminal domain BED33_02275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_02275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED33_02275 PF02378 Phosphotransferase system, EIIC BED33_02280 PF11254 BED33_02280 BED33_02285 PF02092 BED33_02285 BED33_02285 PF05746 DALR anticodon binding domain BED33_02290 PF02091 Glycyl-tRNA synthetase alpha subunit BED33_02295 PF03352 Methyladenine glycosylase BED33_02300 PF13673 Acetyltransferase (GNAT) domain BED33_02310 PF08964 Beta/Gamma crystallin BED33_02325 PF07690 Major Facilitator Superfamily BED33_02330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED33_02330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_02335 PF00128 Alpha amylase, catalytic domain BED33_02340 PF00155 Aminotransferase class I and II BED33_02345 PF02080 TrkA-C domain BED33_02345 PF06826 BED33_02345 BED33_02350 PF01548 BED33_02350 BED33_02350 PF02371 BED33_02350 BED33_02355 PF07690 Major Facilitator Superfamily BED33_02370 PF00175 Oxidoreductase NAD-binding domain BED33_02370 PF00970 Oxidoreductase FAD-binding domain BED33_02375 PF05656 BED33_02375 BED33_02380 PF07305 BED33_02380 BED33_02385 PF00121 Triosephosphate isomerase BED33_02390 PF15644 Papain fold toxin 1 BED33_02395 PF13531 Bacterial extracellular solute-binding protein BED33_02400 PF00365 Phosphofructokinase BED33_02405 PF01545 Cation efflux family BED33_02405 PF16916 BED33_02405 BED33_02410 PF07813 LTXXQ motif family protein BED33_02415 PF00072 Response regulator receiver domain BED33_02415 PF00486 Transcriptional regulatory protein, C terminal BED33_02420 PF00512 His Kinase A (phospho-acceptor) domain BED33_02420 PF00672 HAMP domain BED33_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_02420 PF16527 BED33_02420 BED33_02425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED33_02425 PF02805 Metal binding domain of Ada BED33_02425 PF12833 Helix-turn-helix domain BED33_02430 PF00588 SpoU rRNA Methylase family BED33_02435 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_02435 PF06426 Serine acetyltransferase, N-terminal BED33_02440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BED33_02440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BED33_02445 PF02556 Preprotein translocase subunit SecB BED33_02450 PF00462 Glutaredoxin BED33_02455 PF00581 Rhodanese-like domain BED33_02460 PF01676 Metalloenzyme superfamily BED33_02460 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BED33_02465 PF01551 Peptidase family M23 BED33_02470 PF04748 Divergent polysaccharide deacetylase BED33_02485 PF00107 Zinc-binding dehydrogenase BED33_02485 PF08240 Alcohol dehydrogenase GroES-like domain BED33_02490 PF00155 Aminotransferase class I and II BED33_02495 PF01370 NAD dependent epimerase/dehydratase family BED33_02500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED33_02505 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED33_02510 PF00534 Glycosyl transferases group 1 BED33_02510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BED33_02515 PF00535 Glycosyl transferase family 2 BED33_02520 PF01467 Cytidylyltransferase BED33_02525 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BED33_02525 PF06827 Zinc finger found in FPG and IleRS BED33_02525 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BED33_02530 PF00471 Ribosomal protein L33 BED33_02535 PF00830 Ribosomal L28 family BED33_02540 PF04002 RadC-like JAB domain BED33_02545 PF02441 Flavoprotein BED33_02545 PF04127 DNA / pantothenate metabolism flavoprotein BED33_02550 PF00692 dUTPase BED33_02555 PF00440 Bacterial regulatory proteins, tetR family BED33_02560 PF00156 Phosphoribosyl transferase domain BED33_02565 PF01138 3' exoribonuclease family, domain 1 BED33_02565 PF03725 3' exoribonuclease family, domain 2 BED33_02570 PF03755 BED33_02570 BED33_02570 PF08340 BED33_02570 BED33_02575 PF00589 Phage integrase family BED33_02575 PF13356 Domain of unknown function (DUF4102) BED33_02585 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED33_02595 PF08346 BED33_02595 BED33_02615 PF13973 BED33_02615 BED33_02625 PF06048 BED33_02625 BED33_02625 PF08273 Zinc-binding domain of primase-helicase BED33_02625 PF13362 Toprim domain BED33_02660 PF04326 Divergent AAA domain BED33_02665 PF00753 Metallo-beta-lactamase superfamily BED33_02675 PF00563 EAL domain BED33_02675 PF00990 GGDEF domain BED33_02675 PF13426 PAS domain BED33_02680 PF00378 Enoyl-CoA hydratase/isomerase family BED33_02685 PF01773 Na+ dependent nucleoside transporter N-terminus BED33_02685 PF07662 Na+ dependent nucleoside transporter C-terminus BED33_02690 PF13358 DDE superfamily endonuclease BED33_02690 PF13384 Homeodomain-like domain BED33_02700 PF03458 BED33_02700 BED33_02710 PF00625 Guanylate kinase BED33_02715 PF01192 RNA polymerase Rpb6 BED33_02720 PF02824 TGS domain BED33_02720 PF04607 Region found in RelA / SpoT proteins BED33_02720 PF13291 ACT domain BED33_02720 PF13328 HD domain BED33_02725 PF00588 SpoU rRNA Methylase family BED33_02725 PF12105 SpoU, rRNA methylase, C-terminal BED33_02730 PF00270 DEAD/DEAH box helicase BED33_02730 PF00271 Helicase conserved C-terminal domain BED33_02730 PF17191 BED33_02730 BED33_02735 PF03616 BED33_02735 BED33_02740 PF00860 Permease family BED33_02750 PF00196 Bacterial regulatory proteins, luxR family BED33_02750 PF08448 PAS fold BED33_02755 PF00196 Bacterial regulatory proteins, luxR family BED33_02755 PF08448 PAS fold BED33_02760 PF13693 Winged helix-turn-helix DNA-binding BED33_02765 PF00583 Acetyltransferase (GNAT) family BED33_02765 PF09500 Putative thioesterase (yiiD_Cterm) BED33_02770 PF02580 D-Tyr-tRNA(Tyr) deacylase BED33_02775 PF03631 BED33_02775 BED33_02780 PF13419 Haloacid dehalogenase-like hydrolase BED33_02785 PF00009 Elongation factor Tu GTP binding domain BED33_02785 PF00679 Elongation factor G C-terminus BED33_02785 PF03144 Elongation factor Tu domain 2 BED33_02790 PF00120 Glutamine synthetase, catalytic domain BED33_02790 PF03951 Glutamine synthetase, beta-Grasp domain BED33_02800 PF00512 His Kinase A (phospho-acceptor) domain BED33_02800 PF00989 PAS fold BED33_02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_02805 PF00072 Response regulator receiver domain BED33_02805 PF00158 Sigma-54 interaction domain BED33_02805 PF02954 Bacterial regulatory protein, Fis family BED33_02810 PF04055 Radical SAM superfamily BED33_02810 PF06969 HemN C-terminal domain BED33_02815 PF04220 BED33_02815 BED33_02820 PF01926 50S ribosome-binding GTPase BED33_02825 PF00476 DNA polymerase family A BED33_02825 PF01367 5'-3' exonuclease, C-terminal SAM fold BED33_02825 PF01612 3'-5' exonuclease BED33_02825 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED33_02830 PF01323 DSBA-like thioredoxin domain BED33_02835 PF01636 Phosphotransferase enzyme family BED33_02840 PF06288 Protein of unknown function (DUF1040) BED33_02845 PF12804 MobA-like NTP transferase domain BED33_02850 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BED33_02855 PF00665 Integrase core domain BED33_02860 PF13518 Helix-turn-helix domain BED33_02885 PF00392 Bacterial regulatory proteins, gntR family BED33_02885 PF07729 FCD domain BED33_02890 PF07690 Major Facilitator Superfamily BED33_02895 PF00356 Bacterial regulatory proteins, lacI family BED33_02895 PF13377 Periplasmic binding protein-like domain BED33_02900 PF00294 pfkB family carbohydrate kinase BED33_02905 PF13407 Periplasmic binding protein domain BED33_02910 PF02653 BED33_02910 BED33_02915 PF00005 ABC transporter BED33_02920 PF05025 RbsD / FucU transport protein family BED33_02925 PF02705 BED33_02925 BED33_02930 PF07728 AAA domain (dynein-related subfamily) BED33_02930 PF12592 Protein of unknown function (DUF3763) BED33_02935 PF05762 VWA domain containing CoxE-like protein BED33_02940 PF07077 BED33_02940 BED33_02945 PF03590 Aspartate-ammonia ligase BED33_02950 PF01037 AsnC family BED33_02950 PF13404 AsnC-type helix-turn-helix domain BED33_02955 PF00258 Flavodoxin BED33_02960 PF01134 Glucose inhibited division protein A BED33_02960 PF13932 GidA associated domain 3 BED33_02965 PF02527 rRNA small subunit methyltransferase G BED33_02970 PF03899 BED33_02970 BED33_02975 PF00119 ATP synthase A chain BED33_02980 PF00137 ATP synthase subunit C BED33_02985 PF00430 ATP synthase B/B' CF(0) BED33_02990 PF00213 ATP synthase delta (OSCP) subunit BED33_02995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_02995 PF00306 ATP synthase alpha/beta chain, C terminal domain BED33_02995 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED33_03000 PF00231 ATP synthase BED33_03005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_03005 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED33_03010 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BED33_03010 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BED33_03015 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_03015 PF12804 MobA-like NTP transferase domain BED33_03020 PF01380 SIS domain BED33_03020 PF13522 Glutamine amidotransferase domain BED33_03025 PF12849 PBP superfamily domain BED33_03030 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03035 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03040 PF00005 ABC transporter BED33_03045 PF01895 PhoU domain BED33_03050 PF04519 BED33_03050 BED33_03055 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_03065 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03070 PF13419 Haloacid dehalogenase-like hydrolase BED33_03075 PF00860 Permease family BED33_03080 PF03928 Domain of unknown function (DUF336) BED33_03085 PF00072 Response regulator receiver domain BED33_03085 PF00196 Bacterial regulatory proteins, luxR family BED33_03090 PF00512 His Kinase A (phospho-acceptor) domain BED33_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_03095 PF03358 NADPH-dependent FMN reductase BED33_03100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_03100 PF02743 Cache domain BED33_03105 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03110 PF00005 ABC transporter BED33_03110 PF09383 NIL domain BED33_03115 PF03180 NLPA lipoprotein BED33_03120 PF07055 Enoyl reductase FAD binding domain BED33_03120 PF12241 Trans-2-enoyl-CoA reductase catalytic region BED33_03120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BED33_03125 PF01926 50S ribosome-binding GTPase BED33_03125 PF10396 GTP-binding protein TrmE N-terminus BED33_03125 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE BED33_03130 PF02096 60Kd inner membrane protein BED33_03130 PF14849 YidC periplasmic domain BED33_03135 PF01809 BED33_03135 BED33_03140 PF00825 Ribonuclease P BED33_03145 PF00468 Ribosomal protein L34 BED33_03150 PF00308 Bacterial dnaA protein BED33_03150 PF08299 Bacterial dnaA protein helix-turn-helix BED33_03150 PF11638 DnaA N-terminal domain BED33_03155 PF00712 DNA polymerase III beta subunit, N-terminal domain BED33_03155 PF02767 DNA polymerase III beta subunit, central domain BED33_03155 PF02768 DNA polymerase III beta subunit, C-terminal domain BED33_03160 PF02463 RecF/RecN/SMC N terminal domain BED33_03165 PF00204 DNA gyrase B BED33_03165 PF00986 DNA gyrase B subunit, carboxyl terminus BED33_03165 PF01751 Toprim domain BED33_03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_03170 PF08282 haloacid dehalogenase-like hydrolase BED33_03175 PF02423 Ornithine cyclodeaminase/mu-crystallin family BED33_03180 PF00291 Pyridoxal-phosphate dependent enzyme BED33_03185 PF07676 WD40-like Beta Propeller Repeat BED33_03185 PF12566 BED33_03185 BED33_03190 PF07119 BED33_03190 BED33_03195 PF00011 Hsp20/alpha crystallin family BED33_03200 PF00011 Hsp20/alpha crystallin family BED33_03205 PF01548 BED33_03205 BED33_03205 PF02371 BED33_03205 BED33_03215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_03215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_03220 PF00230 Major intrinsic protein BED33_03230 PF06005 Protein of unknown function (DUF904) BED33_03235 PF03737 Demethylmenaquinone methyltransferase BED33_03240 PF01040 UbiA prenyltransferase family BED33_03245 PF00004 ATPase family associated with various cellular activities (AAA) BED33_03245 PF07724 AAA domain (Cdc48 subfamily) BED33_03245 PF10431 C-terminal, D2-small domain, of ClpB protein BED33_03250 PF00227 Proteasome subunit BED33_03255 PF05036 Sporulation related domain BED33_03260 PF00356 Bacterial regulatory proteins, lacI family BED33_03260 PF13377 Periplasmic binding protein-like domain BED33_03265 PF00270 DEAD/DEAH box helicase BED33_03265 PF00271 Helicase conserved C-terminal domain BED33_03270 PF01197 Ribosomal protein L31 BED33_03275 PF01340 Met Apo-repressor, MetJ BED33_03280 PF01053 Cys/Met metabolism PLP-dependent enzyme BED33_03285 PF00696 Amino acid kinase family BED33_03285 PF00742 Homoserine dehydrogenase BED33_03285 PF03447 Homoserine dehydrogenase, NAD binding domain BED33_03290 PF02219 Methylenetetrahydrofolate reductase BED33_03295 PF00311 Phosphoenolpyruvate carboxylase BED33_03300 PF01546 Peptidase family M20/M25/M40 BED33_03300 PF07687 Peptidase dimerisation domain BED33_03305 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED33_03305 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED33_03310 PF00696 Amino acid kinase family BED33_03315 PF00206 Lyase BED33_03315 PF14698 Argininosuccinate lyase C-terminal BED33_03320 PF00593 TonB dependent receptor BED33_03320 PF07715 TonB-dependent Receptor Plug Domain BED33_03325 PF06438 Heme-binding protein A (HasA) BED33_03330 PF06438 Heme-binding protein A (HasA) BED33_03335 PF06438 Heme-binding protein A (HasA) BED33_03345 PF00005 ABC transporter BED33_03345 PF00664 ABC transporter transmembrane region BED33_03350 PF13437 HlyD family secretion protein BED33_03350 PF13533 Biotin-lipoyl like BED33_03355 PF03544 Gram-negative bacterial TonB protein C-terminal BED33_03370 PF00462 Glutaredoxin BED33_03370 PF08534 Redoxin BED33_03375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_03375 PF03466 LysR substrate binding domain BED33_03380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED33_03380 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_03385 PF00440 Bacterial regulatory proteins, tetR family BED33_03390 PF07226 BED33_03390 BED33_03395 PF05958 tRNA (Uracil-5-)-methyltransferase BED33_03400 PF00593 TonB dependent receptor BED33_03400 PF07715 TonB-dependent Receptor Plug Domain BED33_03405 PF01177 Asp/Glu/Hydantoin racemase BED33_03445 PF13407 Periplasmic binding protein domain BED33_03450 PF00005 ABC transporter BED33_03455 PF02653 BED33_03455 BED33_03460 PF02653 BED33_03460 BED33_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_03465 PF03466 LysR substrate binding domain BED33_03470 PF04219 BED33_03470 BED33_03475 PF01078 Magnesium chelatase, subunit ChlI BED33_03475 PF13335 BED33_03475 BED33_03475 PF13541 Subunit ChlI of Mg-chelatase BED33_03480 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_03480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_03480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_03485 PF13710 ACT domain BED33_03490 PF01063 Aminotransferase class IV BED33_03495 PF00920 Dehydratase family BED33_03500 PF00291 Pyridoxal-phosphate dependent enzyme BED33_03500 PF00585 C-terminal regulatory domain of Threonine dehydratase BED33_03515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_03515 PF03466 LysR substrate binding domain BED33_03520 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BED33_03520 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain BED33_03530 PF01320 Colicin immunity protein / pyocin immunity protein BED33_03535 PF01320 Colicin immunity protein / pyocin immunity protein BED33_03540 PF06530 BED33_03540 BED33_03545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_03545 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_03550 PF00419 Fimbrial protein BED33_03555 PF13953 PapC C-terminal domain BED33_03565 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_03565 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_03570 PF13358 DDE superfamily endonuclease BED33_03570 PF13384 Homeodomain-like domain BED33_03580 PF00356 Bacterial regulatory proteins, lacI family BED33_03580 PF13377 Periplasmic binding protein-like domain BED33_03585 PF13673 Acetyltransferase (GNAT) domain BED33_03590 PF13708 BED33_03590 BED33_03595 PF06755 BED33_03595 BED33_03605 PF00872 BED33_03605 BED33_03610 PF12146 Putative lysophospholipase BED33_03615 PF05860 haemagglutination activity domain BED33_03630 PF05860 haemagglutination activity domain BED33_03645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_03645 PF05231 BED33_03645 BED33_03645 PF07730 Histidine kinase BED33_03650 PF00072 Response regulator receiver domain BED33_03650 PF00196 Bacterial regulatory proteins, luxR family BED33_03655 PF00884 Sulfatase BED33_03655 PF08019 BED33_03655 BED33_03660 PF02566 OsmC-like protein BED33_03665 PF01548 BED33_03665 BED33_03665 PF02371 BED33_03665 BED33_03670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_03675 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03680 PF00528 Binding-protein-dependent transport system inner membrane component BED33_03680 PF12911 BED33_03680 BED33_03685 PF00005 ABC transporter BED33_03685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_03690 PF00005 ABC transporter BED33_03690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_03695 PF11658 BED33_03695 BED33_03700 PF11120 BED33_03700 BED33_03705 PF10995 BED33_03705 BED33_03710 PF10945 BED33_03710 BED33_03715 PF06564 YhjQ protein BED33_03720 PF00535 Glycosyl transferase family 2 BED33_03720 PF03552 Cellulose synthase BED33_03720 PF07238 PilZ domain BED33_03725 PF03170 Bacterial cellulose synthase subunit BED33_03730 PF01270 Glycosyl hydrolases family 8 BED33_03735 PF05420 BED33_03735 BED33_03735 PF13432 Tetratricopeptide repeat BED33_03735 PF14559 Tetratricopeptide repeat BED33_03745 PF00563 EAL domain BED33_03745 PF17154 BED33_03745 BED33_03750 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED33_03755 PF06917 Periplasmic pectate lyase BED33_03760 PF00754 F5/8 type C domain BED33_03765 PF00375 Sodium:dicarboxylate symporter family BED33_03770 PF00675 Insulinase (Peptidase family M16) BED33_03770 PF05193 Peptidase M16 inactive domain BED33_03775 PF00294 pfkB family carbohydrate kinase BED33_03780 PF01361 Tautomerase enzyme BED33_03785 PF00563 EAL domain BED33_03795 PF02611 CDP-diacylglycerol pyrophosphatase BED33_03800 PF03631 BED33_03800 BED33_03805 PF03212 Pertactin BED33_03805 PF03797 Autotransporter beta-domain BED33_03810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED33_03810 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_03815 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ BED33_03820 PF01432 Peptidase family M3 BED33_03825 PF04445 Putative SAM-dependent methyltransferase BED33_03830 PF08548 Peptidase M10 serralysin C terminal BED33_03835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED33_03835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BED33_03840 PF00582 Universal stress protein family BED33_03845 PF01548 BED33_03845 BED33_03845 PF02371 BED33_03845 BED33_03850 PF10625 BED33_03850 BED33_03855 PF01384 BED33_03855 BED33_03860 PF03486 HI0933-like protein BED33_03865 PF08722 TnsA endonuclease N terminal BED33_03875 PF13401 AAA domain BED33_03890 PF16473 BED33_03890 BED33_03900 PF13610 BED33_03900 BED33_03905 PF07728 AAA domain (dynein-related subfamily) BED33_03915 PF04607 Region found in RelA / SpoT proteins BED33_03925 PF00375 Sodium:dicarboxylate symporter family BED33_03930 PF14330 BED33_03930 BED33_03935 PF07287 BED33_03935 BED33_03940 PF05034 Methylaspartate ammonia-lyase N-terminus BED33_03940 PF07476 Methylaspartate ammonia-lyase C-terminus BED33_03945 PF06368 Methylaspartate mutase E chain (MutE) BED33_03960 PF00288 GHMP kinases N terminal domain BED33_03965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_03970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_03970 PF03466 LysR substrate binding domain BED33_03975 PF05681 BED33_03975 BED33_03975 PF05683 Fumarase C-terminus BED33_03985 PF08282 haloacid dehalogenase-like hydrolase BED33_03995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_03995 PF03466 LysR substrate binding domain BED33_04000 PF07690 Major Facilitator Superfamily BED33_04005 PF00171 Aldehyde dehydrogenase family BED33_04010 PF04962 KduI/IolB family BED33_04015 PF01380 SIS domain BED33_04015 PF01418 Helix-turn-helix domain, rpiR family BED33_04020 PF00294 pfkB family carbohydrate kinase BED33_04020 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) BED33_04025 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_04025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_04025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_04030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED33_04030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED33_04035 PF01261 Xylose isomerase-like TIM barrel BED33_04040 PF00583 Acetyltransferase (GNAT) family BED33_04045 PF02678 Pirin BED33_04050 PF00356 Bacterial regulatory proteins, lacI family BED33_04050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_04055 PF02447 BED33_04055 BED33_04060 PF01202 Shikimate kinase BED33_04065 PF01914 BED33_04065 BED33_04070 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED33_04070 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED33_04075 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_04075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_04075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_04080 PF03306 Alpha-acetolactate decarboxylase BED33_04085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_04085 PF03466 LysR substrate binding domain BED33_04090 PF06580 BED33_04090 BED33_04090 PF07694 5TMR of 5TMR-LYT BED33_04095 PF00128 Alpha amylase, catalytic domain BED33_04095 PF02806 Alpha amylase, C-terminal all-beta domain BED33_04095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED33_04100 PF00128 Alpha amylase, catalytic domain BED33_04100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED33_04105 PF00483 Nucleotidyl transferase BED33_04110 PF00534 Glycosyl transferases group 1 BED33_04110 PF08323 Starch synthase catalytic domain BED33_04115 PF00343 Carbohydrate phosphorylase BED33_04120 PF01266 FAD dependent oxidoreductase BED33_04120 PF16901 BED33_04120 BED33_04130 PF01548 BED33_04130 BED33_04130 PF02371 BED33_04130 BED33_04135 PF00455 BED33_04135 BED33_04135 PF08220 DeoR-like helix-turn-helix domain BED33_04140 PF01694 Rhomboid family BED33_04140 PF12122 Protein of unknown function (DUF3582) BED33_04145 PF00581 Rhodanese-like domain BED33_04155 PF00196 Bacterial regulatory proteins, luxR family BED33_04160 PF00343 Carbohydrate phosphorylase BED33_04165 PF02446 4-alpha-glucanotransferase BED33_04170 PF01106 NifU-like domain BED33_04170 PF01521 Iron-sulphur cluster biosynthesis BED33_04180 PF00561 alpha/beta hydrolase fold BED33_04185 PF07338 Protein of unknown function (DUF1471) BED33_04190 PF01548 BED33_04190 BED33_04190 PF02371 BED33_04190 BED33_04195 PF09012 FeoC like transcriptional regulator BED33_04200 PF02421 Ferrous iron transport protein B BED33_04200 PF07664 BED33_04200 BED33_04200 PF07670 Nucleoside recognition BED33_04205 PF04023 FeoA domain BED33_04210 PF00575 S1 RNA binding domain BED33_04210 PF09371 Tex-like protein N-terminal domain BED33_04210 PF12836 Helix-hairpin-helix motif BED33_04210 PF16921 BED33_04210 BED33_04215 PF07690 Major Facilitator Superfamily BED33_04235 PF01272 Transcription elongation factor, GreA/GreB, C-term BED33_04235 PF03449 Transcription elongation factor, N-terminal BED33_04240 PF00072 Response regulator receiver domain BED33_04240 PF00486 Transcriptional regulatory protein, C terminal BED33_04245 PF00512 His Kinase A (phospho-acceptor) domain BED33_04245 PF00672 HAMP domain BED33_04245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_04250 PF01293 Phosphoenolpyruvate carboxykinase BED33_04255 PF01430 Hsp33 protein BED33_04260 PF01479 S4 domain BED33_04265 PF13419 Haloacid dehalogenase-like hydrolase BED33_04270 PF07095 Intracellular growth attenuator protein IgaA BED33_04275 PF00293 NUDIX domain BED33_04280 PF00905 Penicillin binding protein transpeptidase domain BED33_04280 PF00912 Transglycosylase BED33_04280 PF17092 BED33_04280 BED33_04285 PF11104 Type IV pilus assembly protein PilM; BED33_04290 PF05137 BED33_04290 BED33_04300 PF10748 BED33_04300 BED33_04305 PF00263 BED33_04305 BED33_04305 PF03958 Bacterial type II/III secretion system short domain BED33_04310 PF01202 Shikimate kinase BED33_04315 PF01761 3-dehydroquinate synthase BED33_04320 PF05036 Sporulation related domain BED33_04325 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED33_04330 PF00834 Ribulose-phosphate 3 epimerase family BED33_04340 PF00579 tRNA synthetases class I (W and Y) BED33_04345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_04345 PF10414 Sirohaem synthase dimerisation region BED33_04345 PF13241 Putative NAD(P)-binding BED33_04345 PF14824 Sirohaem biosynthesis protein central BED33_04355 PF13806 Rieske-like [2Fe-2S] domain BED33_04360 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED33_04360 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED33_04360 PF04324 BFD-like [2Fe-2S] binding domain BED33_04360 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_04365 PF07969 Amidohydrolase family BED33_04370 PF07690 Major Facilitator Superfamily BED33_04375 PF00356 Bacterial regulatory proteins, lacI family BED33_04375 PF13377 Periplasmic binding protein-like domain BED33_04380 PF02056 Family 4 glycosyl hydrolase BED33_04380 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED33_04385 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED33_04390 PF05872 BED33_04390 BED33_04395 PF00117 Glutamine amidotransferase class-I BED33_04400 PF00202 Aminotransferase class-III BED33_04410 PF00027 Cyclic nucleotide-binding domain BED33_04410 PF00325 Bacterial regulatory proteins, crp family BED33_04415 PF02566 OsmC-like protein BED33_04420 PF00485 Phosphoribulokinase / Uridine kinase family BED33_04425 PF06794 Uncharacterised protein family (UPF0270) BED33_04430 PF00561 alpha/beta hydrolase fold BED33_04435 PF01810 BED33_04435 BED33_04440 PF02567 Phenazine biosynthesis-like protein BED33_04445 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED33_04455 PF00528 Binding-protein-dependent transport system inner membrane component BED33_04460 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BED33_04465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED33_04470 PF00535 Glycosyl transferase family 2 BED33_04475 PF00005 ABC transporter BED33_04475 PF12848 ABC transporter BED33_04480 PF02525 Flavodoxin-like fold BED33_04485 PF00999 Sodium/hydrogen exchanger family BED33_04485 PF02254 TrkA-N domain BED33_04490 PF09526 BED33_04490 BED33_04495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED33_04500 PF04102 SlyX BED33_04505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED33_04505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED33_04510 PF08348 BED33_04510 BED33_04510 PF13309 BED33_04510 BED33_04515 PF02635 DsrE/DsrF-like family BED33_04520 PF02635 DsrE/DsrF-like family BED33_04525 PF04077 DsrH like protein BED33_04530 PF00164 Ribosomal protein S12/S23 BED33_04535 PF00177 Ribosomal protein S7p/S5e BED33_04540 PF00009 Elongation factor Tu GTP binding domain BED33_04540 PF00679 Elongation factor G C-terminus BED33_04540 PF03144 Elongation factor Tu domain 2 BED33_04540 PF03764 Elongation factor G, domain IV BED33_04540 PF14492 Elongation Factor G, domain II BED33_04550 PF04324 BFD-like [2Fe-2S] binding domain BED33_04555 PF00210 Ferritin-like domain BED33_04560 PF00338 Ribosomal protein S10p/S20e BED33_04565 PF00297 Ribosomal protein L3 BED33_04570 PF00573 Ribosomal protein L4/L1 family BED33_04575 PF00276 Ribosomal protein L23 BED33_04580 PF00181 Ribosomal Proteins L2, RNA binding domain BED33_04580 PF03947 Ribosomal Proteins L2, C-terminal domain BED33_04585 PF00203 Ribosomal protein S19 BED33_04590 PF00237 Ribosomal protein L22p/L17e BED33_04595 PF00189 Ribosomal protein S3, C-terminal domain BED33_04595 PF07650 KH domain BED33_04600 PF00252 Ribosomal protein L16p/L10e BED33_04605 PF00831 Ribosomal L29 protein BED33_04610 PF00366 Ribosomal protein S17 BED33_04615 PF00238 Ribosomal protein L14p/L23e BED33_04620 PF00467 KOW motif BED33_04620 PF17136 BED33_04620 BED33_04625 PF00281 Ribosomal protein L5 BED33_04625 PF00673 ribosomal L5P family C-terminus BED33_04630 PF00253 Ribosomal protein S14p/S29e BED33_04635 PF00410 Ribosomal protein S8 BED33_04640 PF00347 Ribosomal protein L6 BED33_04645 PF00861 Ribosomal L18p/L5e family BED33_04650 PF00333 Ribosomal protein S5, N-terminal domain BED33_04650 PF03719 Ribosomal protein S5, C-terminal domain BED33_04655 PF00327 Ribosomal protein L30p/L7e BED33_04660 PF00828 Ribosomal protein L18e/L15 BED33_04665 PF00344 SecY translocase BED33_04670 PF00444 Ribosomal protein L36 BED33_04680 PF00411 Ribosomal protein S11 BED33_04685 PF00163 Ribosomal protein S4/S9 N-terminal domain BED33_04685 PF01479 S4 domain BED33_04690 PF01000 RNA polymerase Rpb3/RpoA insert domain BED33_04690 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BED33_04690 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BED33_04695 PF01196 Ribosomal protein L17 BED33_04700 PF09350 BED33_04700 BED33_04705 PF13411 MerR HTH family regulatory protein BED33_04710 PF03889 BED33_04710 BED33_04715 PF05598 BED33_04715 BED33_04715 PF13751 BED33_04715 BED33_04720 PF01741 Large-conductance mechanosensitive channel, MscL BED33_04725 PF02080 TrkA-C domain BED33_04725 PF02254 TrkA-N domain BED33_04730 PF01029 NusB family BED33_04730 PF01189 NOL1/NOP2/sun family BED33_04735 PF00551 Formyl transferase BED33_04735 PF02911 Formyl transferase, C-terminal domain BED33_04740 PF01327 Polypeptide deformylase BED33_04745 PF02481 DNA recombination-mediator protein A BED33_04750 PF04361 BED33_04750 BED33_04755 PF01396 BED33_04755 BED33_04760 PF01300 Telomere recombination BED33_04765 PF01488 Shikimate / quinate 5-dehydrogenase BED33_04765 PF08501 Shikimate dehydrogenase substrate binding domain BED33_04770 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_04805 PF04204 Homoserine O-succinyltransferase BED33_04810 PF01274 Malate synthase BED33_04815 PF00463 Isocitrate lyase family BED33_04820 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BED33_04825 PF01614 Bacterial transcriptional regulator BED33_04825 PF09339 IclR helix-turn-helix domain BED33_04830 PF00809 Pterin binding enzyme BED33_04830 PF02310 B12 binding domain BED33_04830 PF02574 Homocysteine S-methyltransferase BED33_04830 PF02607 B12 binding domain BED33_04830 PF02965 Vitamin B12 dependent methionine synthase, activation domain BED33_04835 PF05860 haemagglutination activity domain BED33_04835 PF13332 BED33_04835 BED33_04840 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED33_04840 PF08479 POTRA domain, ShlB-type BED33_04840 PF17287 BED33_04840 BED33_04845 PF01758 Sodium Bile acid symporter family BED33_04850 PF00696 Amino acid kinase family BED33_04855 PF00342 Phosphoglucose isomerase BED33_04860 PF06146 BED33_04860 BED33_04865 PF01548 BED33_04865 BED33_04865 PF02371 BED33_04865 BED33_04870 PF00528 Binding-protein-dependent transport system inner membrane component BED33_04880 PF13416 Bacterial extracellular solute-binding protein BED33_04885 PF00005 ABC transporter BED33_04885 PF08402 TOBE domain BED33_04890 PF02264 LamB porin BED33_04895 PF07148 BED33_04895 BED33_04905 PF04345 Chorismate lyase BED33_04910 PF01040 UbiA prenyltransferase family BED33_04915 PF01553 Acyltransferase BED33_04920 PF01219 Prokaryotic diacylglycerol kinase BED33_04925 PF00717 Peptidase S24-like BED33_04925 PF01726 LexA DNA binding domain BED33_04930 PF05532 CsbD-like BED33_04935 PF01475 Ferric uptake regulator family BED33_04940 PF01757 BED33_04940 BED33_04945 PF01207 Dihydrouridine synthase (Dus) BED33_04950 PF09583 BED33_04950 BED33_04960 PF00107 Zinc-binding dehydrogenase BED33_04960 PF08240 Alcohol dehydrogenase GroES-like domain BED33_04965 PF00772 DnaB-like helicase N terminal domain BED33_04965 PF03796 DnaB-like helicase C terminal domain BED33_04975 PF00155 Aminotransferase class I and II BED33_04980 PF04237 YjbR BED33_04990 PF00436 Single-strand binding protein family BED33_04995 PF07804 HipA-like C-terminal domain BED33_04995 PF13657 HipA N-terminal domain BED33_05000 PF01381 Helix-turn-helix BED33_05005 PF00043 Glutathione S-transferase, C-terminal domain BED33_05005 PF02798 Glutathione S-transferase, N-terminal domain BED33_05010 PF00860 Permease family BED33_05015 PF00999 Sodium/hydrogen exchanger family BED33_05020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_05020 PF03466 LysR substrate binding domain BED33_05025 PF03788 BED33_05025 BED33_05035 PF00005 ABC transporter BED33_05040 PF00528 Binding-protein-dependent transport system inner membrane component BED33_05045 PF00528 Binding-protein-dependent transport system inner membrane component BED33_05050 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_05055 PF10142 PhoPQ-activated pathogenicity-related protein BED33_05060 PF01548 BED33_05060 BED33_05060 PF02371 BED33_05060 BED33_05065 PF03279 BED33_05065 BED33_05070 PF00939 Sodium:sulfate symporter transmembrane region BED33_05075 PF00313 'Cold-shock' DNA-binding domain BED33_05080 PF00313 'Cold-shock' DNA-binding domain BED33_05085 PF05433 BED33_05085 BED33_05095 PF02954 Bacterial regulatory protein, Fis family BED33_05100 PF01207 Dihydrouridine synthase (Dus) BED33_05105 PF06325 Ribosomal protein L11 methyltransferase (PrmA) BED33_05110 PF00474 Sodium:solute symporter family BED33_05115 PF06196 BED33_05115 BED33_05120 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain BED33_05120 PF02785 Biotin carboxylase C-terminal domain BED33_05120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED33_05125 PF00364 Biotin-requiring enzyme BED33_05130 PF01220 Dehydroquinase class II BED33_05135 PF01794 BED33_05135 BED33_05140 PF00174 Oxidoreductase molybdopterin binding domain BED33_05145 PF00107 Zinc-binding dehydrogenase BED33_05145 PF08240 Alcohol dehydrogenase GroES-like domain BED33_05150 PF00563 EAL domain BED33_05150 PF00990 GGDEF domain BED33_05150 PF17157 BED33_05150 BED33_05155 PF06723 MreB/Mbl protein BED33_05160 PF04085 rod shape-determining protein MreC BED33_05165 PF04093 BED33_05165 BED33_05170 PF02545 Maf-like protein BED33_05175 PF00575 S1 RNA binding domain BED33_05175 PF10150 Ribonuclease E/G family BED33_05180 PF13116 BED33_05180 BED33_05180 PF13502 BED33_05180 BED33_05185 PF00795 Carbon-nitrogen hydrolase BED33_05190 PF01523 Putative modulator of DNA gyrase BED33_05195 PF07804 HipA-like C-terminal domain BED33_05195 PF13657 HipA N-terminal domain BED33_05200 PF01381 Helix-turn-helix BED33_05210 PF10828 BED33_05210 BED33_05215 PF13539 D-alanyl-D-alanine carboxypeptidase BED33_05220 PF16083 BED33_05220 BED33_05225 PF03534 Salmonella virulence plasmid 65kDa B protein BED33_05225 PF12255 Insecticide toxin TcdB middle/C-terminal region BED33_05225 PF12256 Insecticide toxin TcdB middle/N-terminal region BED33_05245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_05245 PF03466 LysR substrate binding domain BED33_05250 PF07869 BED33_05250 BED33_05255 PF13437 HlyD family secretion protein BED33_05255 PF13533 Biotin-lipoyl like BED33_05260 PF04632 BED33_05260 BED33_05265 PF00171 Aldehyde dehydrogenase family BED33_05270 PF00545 ribonuclease BED33_05275 PF01337 Barstar (barnase inhibitor) BED33_05280 PF04751 Protein of unknown function (DUF615) BED33_05285 PF00589 Phage integrase family BED33_05315 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED33_05320 PF01507 Phosphoadenosine phosphosulfate reductase family BED33_05325 PF05840 BED33_05325 BED33_05330 PF04606 BED33_05330 BED33_05340 PF03237 Terminase-like family BED33_05340 PF06056 Putative ATPase subunit of terminase (gpP-like) BED33_05340 PF17289 BED33_05340 BED33_05345 PF05929 BED33_05345 BED33_05350 PF05125 BED33_05350 BED33_05355 PF05944 BED33_05355 BED33_05360 PF05926 BED33_05360 BED33_05365 PF06891 BED33_05365 BED33_05380 PF10772 BED33_05380 BED33_05385 PF04550 BED33_05385 BED33_05390 PF13539 D-alanyl-D-alanine carboxypeptidase BED33_05400 PF10963 BED33_05400 BED33_05405 PF10145 BED33_05405 BED33_05410 PF10761 BED33_05410 BED33_05415 PF04865 BED33_05415 BED33_05430 PF02413 BED33_05430 BED33_05455 PF14355 BED33_05455 BED33_05460 PF01523 Putative modulator of DNA gyrase BED33_05465 PF01548 BED33_05465 BED33_05465 PF02371 BED33_05465 BED33_05470 PF07361 Cytochrome b562 BED33_05475 PF01272 Transcription elongation factor, GreA/GreB, C-term BED33_05475 PF14760 Rnk N-terminus BED33_05480 PF00874 PRD domain BED33_05485 PF14272 BED33_05485 BED33_05490 PF14189 BED33_05490 BED33_05495 PF14188 BED33_05495 BED33_05500 PF14187 BED33_05500 BED33_05505 PF01979 Amidohydrolase family BED33_05510 PF03841 L-seryl-tRNA selenium transferase BED33_05515 PF07071 Protein of unknown function (DUF1341) BED33_05525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_05525 PF00874 PRD domain BED33_05525 PF05043 Mga helix-turn-helix domain BED33_05525 PF08279 HTH domain BED33_05530 PF01381 Helix-turn-helix BED33_05535 PF05015 Plasmid maintenance system killer protein BED33_05545 PF00356 Bacterial regulatory proteins, lacI family BED33_05545 PF13377 Periplasmic binding protein-like domain BED33_05555 PF00128 Alpha amylase, catalytic domain BED33_05555 PF11941 Domain of unknown function (DUF3459) BED33_05560 PF00227 Proteasome subunit BED33_05565 PF01841 Transglutaminase-like superfamily BED33_05565 PF08379 BED33_05565 BED33_05570 PF04168 BED33_05570 BED33_05575 PF14403 BED33_05575 BED33_05580 PF01042 Endoribonuclease L-PSP BED33_05585 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BED33_05585 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BED33_05590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED33_05590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED33_05595 PF00381 PTS HPr component phosphorylation site BED33_05600 PF03668 BED33_05600 BED33_05605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_05610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED33_05615 PF00309 BED33_05615 BED33_05615 PF04552 Sigma-54, DNA binding domain BED33_05615 PF04963 Sigma-54 factor, core binding domain BED33_05620 PF00005 ABC transporter BED33_05620 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED33_05625 PF03968 OstA-like protein BED33_05630 PF06835 Lipopolysaccharide-assembly, LptC-related BED33_05635 PF08282 haloacid dehalogenase-like hydrolase BED33_05640 PF00571 CBS domain BED33_05640 PF01380 SIS domain BED33_05650 PF00005 ABC transporter BED33_05655 PF02405 BED33_05655 BED33_05660 PF02470 BED33_05660 BED33_05665 PF05494 Toluene tolerance, Ttg2 BED33_05670 PF13466 STAS domain BED33_05675 PF01722 BolA-like protein BED33_05680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED33_05685 PF13180 PDZ domain BED33_05685 PF13365 Trypsin-like peptidase domain BED33_05690 PF00595 PDZ domain (Also known as DHR or GLGF) BED33_05690 PF13180 PDZ domain BED33_05690 PF13365 Trypsin-like peptidase domain BED33_05695 PF06295 BED33_05695 BED33_05700 PF03969 AFG1-like ATPase BED33_05705 PF00572 Ribosomal protein L13 BED33_05710 PF00380 Ribosomal protein S9/S16 BED33_05715 PF00043 Glutathione S-transferase, C-terminal domain BED33_05715 PF02798 Glutathione S-transferase, N-terminal domain BED33_05720 PF04386 Stringent starvation protein B BED33_05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_05735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BED33_05740 PF00310 Glutamine amidotransferases class-II BED33_05740 PF01493 GXGXG motif BED33_05740 PF01645 Conserved region in glutamate synthase BED33_05740 PF04898 Glutamate synthase central domain BED33_05745 PF04055 Radical SAM superfamily BED33_05745 PF16199 BED33_05745 BED33_05750 PF00072 Response regulator receiver domain BED33_05750 PF00512 His Kinase A (phospho-acceptor) domain BED33_05750 PF00989 PAS fold BED33_05750 PF01627 Hpt domain BED33_05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_05760 PF00912 Transglycosylase BED33_05765 PF04972 BON domain BED33_05770 PF13580 SIS domain BED33_05775 PF02021 Uncharacterised protein family UPF0102 BED33_05780 PF04348 LppC putative lipoprotein BED33_05785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_05805 PF00239 Resolvase, N terminal domain BED33_05815 PF00145 C-5 cytosine-specific DNA methylase BED33_05825 PF01381 Helix-turn-helix BED33_05835 PF16970 BED33_05835 BED33_05840 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_05840 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_05845 PF00577 Outer membrane usher protein BED33_05845 PF13953 PapC C-terminal domain BED33_05845 PF13954 PapC N-terminal domain BED33_05855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_05855 PF03466 LysR substrate binding domain BED33_05860 PF00248 Aldo/keto reductase family BED33_05865 PF00107 Zinc-binding dehydrogenase BED33_05865 PF08240 Alcohol dehydrogenase GroES-like domain BED33_05870 PF02678 Pirin BED33_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_05875 PF03466 LysR substrate binding domain BED33_05880 PF13409 Glutathione S-transferase, N-terminal domain BED33_05880 PF13410 Glutathione S-transferase, C-terminal domain BED33_05885 PF07681 BED33_05885 BED33_05890 PF13997 BED33_05890 BED33_05895 PF07332 BED33_05895 BED33_05900 PF05957 BED33_05900 BED33_05905 PF06476 BED33_05905 BED33_05910 PF13721 SecD export protein N-terminal TM region BED33_05915 PF09335 BED33_05915 BED33_05925 PF00392 Bacterial regulatory proteins, gntR family BED33_05925 PF07729 FCD domain BED33_05930 PF07690 Major Facilitator Superfamily BED33_05935 PF02614 Glucuronate isomerase BED33_05940 PF01232 Mannitol dehydrogenase Rossmann domain BED33_05940 PF08125 Mannitol dehydrogenase C-terminal domain BED33_05945 PF04295 BED33_05945 BED33_05945 PF08666 SAF domain BED33_05950 PF10688 BED33_05950 BED33_05955 PF00375 Sodium:dicarboxylate symporter family BED33_05960 PF03741 BED33_05960 BED33_05970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED33_05975 PF01863 Protein of unknown function DUF45 BED33_05980 PF03797 Autotransporter beta-domain BED33_05990 PF03797 Autotransporter beta-domain BED33_05995 PF05175 Methyltransferase small domain BED33_06000 PF01548 BED33_06000 BED33_06000 PF02371 BED33_06000 BED33_06005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BED33_06005 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_06010 PF00892 EamA-like transporter family BED33_06015 PF03729 BED33_06015 BED33_06025 PF00282 Pyridoxal-dependent decarboxylase conserved domain BED33_06030 PF13520 Amino acid permease BED33_06035 PF04960 Glutaminase BED33_06045 PF00872 BED33_06045 BED33_06050 PF00367 phosphotransferase system, EIIB BED33_06055 PF13580 SIS domain BED33_06060 PF01380 SIS domain BED33_06060 PF01418 Helix-turn-helix domain, rpiR family BED33_06065 PF00933 Glycosyl hydrolase family 3 N terminal domain BED33_06075 PF07075 Protein of unknown function (DUF1343) BED33_06085 PF01548 BED33_06085 BED33_06085 PF02371 BED33_06085 BED33_06090 PF00140 Sigma-70 factor, region 1 BED33_06090 PF03979 Sigma-70 factor, region 1 BED33_06090 PF04539 Sigma-70 region 3 BED33_06090 PF04542 Sigma-70 region 2 BED33_06090 PF04545 Sigma-70, region 4 BED33_06090 PF04546 Sigma-70, non-essential region BED33_06095 PF01807 CHC2 zinc finger BED33_06095 PF08275 DNA primase catalytic core, N-terminal domain BED33_06095 PF08278 DNA primase DnaG DnaB-binding BED33_06095 PF10410 DnaB-helicase binding domain of primase BED33_06095 PF13155 Toprim-like BED33_06100 PF01165 Ribosomal protein S21 BED33_06105 PF00814 Glycoprotease family BED33_06110 PF02660 BED33_06110 BED33_06115 PF02152 Dihydroneopterin aldolase BED33_06120 PF02673 BED33_06120 BED33_06125 PF01743 Poly A polymerase head domain BED33_06125 PF01966 HD domain BED33_06125 PF12627 Probable RNA and SrmB- binding site of polymerase A BED33_06130 PF08239 Bacterial SH3 domain BED33_06135 PF01928 CYTH domain BED33_06140 PF03710 Glutamate-ammonia ligase adenylyltransferase BED33_06140 PF08335 GlnD PII-uridylyltransferase BED33_06145 PF00294 pfkB family carbohydrate kinase BED33_06145 PF01467 Cytidylyltransferase BED33_06150 PF13520 Amino acid permease BED33_06155 PF04380 BED33_06155 BED33_06160 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BED33_06165 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BED33_06170 PF03738 Glutathionylspermidine synthase preATP-grasp BED33_06175 PF06693 BED33_06175 BED33_06185 PF02321 Outer membrane efflux protein BED33_06190 PF00293 NUDIX domain BED33_06195 PF06853 BED33_06195 BED33_06200 PF00149 Calcineurin-like phosphoesterase BED33_06205 PF05728 Uncharacterised protein family (UPF0227) BED33_06210 PF00204 DNA gyrase B BED33_06210 PF00986 DNA gyrase B subunit, carboxyl terminus BED33_06210 PF01751 Toprim domain BED33_06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_06215 PF03466 LysR substrate binding domain BED33_06220 PF03992 Antibiotic biosynthesis monooxygenase BED33_06225 PF02525 Flavodoxin-like fold BED33_06230 PF00521 DNA gyrase/topoisomerase IV, subunit A BED33_06230 PF03989 DNA gyrase C-terminal domain, beta-propeller BED33_06235 PF01553 Acyltransferase BED33_06240 PF00394 Multicopper oxidase BED33_06240 PF07731 Multicopper oxidase BED33_06240 PF07732 Multicopper oxidase BED33_06245 PF04055 Radical SAM superfamily BED33_06245 PF08497 BED33_06245 BED33_06245 PF11842 BED33_06245 BED33_06250 PF00248 Aldo/keto reductase family BED33_06255 PF00465 Iron-containing alcohol dehydrogenase BED33_06260 PF06719 BED33_06260 BED33_06260 PF12833 Helix-turn-helix domain BED33_06265 PF09335 BED33_06265 BED33_06270 PF01053 Cys/Met metabolism PLP-dependent enzyme BED33_06275 PF01618 BED33_06275 BED33_06280 PF02472 Biopolymer transport protein ExbD/TolR BED33_06285 PF00092 von Willebrand factor type A domain BED33_06290 PF16964 BED33_06290 BED33_06295 PF07811 BED33_06295 BED33_06310 PF00482 Type II secretion system (T2SS), protein F BED33_06315 PF00437 Type II/IV secretion system protein BED33_06330 PF00263 BED33_06330 BED33_06330 PF13629 BED33_06330 BED33_06340 PF01478 Type IV leader peptidase family BED33_06350 PF00486 Transcriptional regulatory protein, C terminal BED33_06355 PF13532 2OG-Fe(II) oxygenase superfamily BED33_06360 PF00873 AcrB/AcrD/AcrF family BED33_06365 PF13683 BED33_06365 BED33_06385 PF12833 Helix-turn-helix domain BED33_06390 PF01527 Transposase BED33_06400 PF02321 Outer membrane efflux protein BED33_06410 PF00005 ABC transporter BED33_06425 PF00665 Integrase core domain BED33_06430 PF01527 Transposase BED33_06440 PF00756 Putative esterase BED33_06440 PF11806 Domain of unknown function (DUF3327) BED33_06445 PF00005 ABC transporter BED33_06450 PF01032 FecCD transport family BED33_06455 PF01032 FecCD transport family BED33_06460 PF01497 Periplasmic binding protein BED33_06470 PF01370 NAD dependent epimerase/dehydratase family BED33_06475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_06475 PF02203 Tar ligand binding domain homologue BED33_06485 PF00771 FHIPEP family BED33_06490 PF01312 FlhB HrpN YscU SpaS Family BED33_06495 PF01311 BED33_06495 BED33_06500 PF01313 BED33_06500 BED33_06505 PF00813 BED33_06505 BED33_06510 PF01052 Surface presentation of antigens (SPOA) BED33_06515 PF01052 Surface presentation of antigens (SPOA) BED33_06520 PF00158 Sigma-54 interaction domain BED33_06520 PF02954 Bacterial regulatory protein, Fis family BED33_06525 PF02049 BED33_06525 BED33_06535 PF01706 FliG C-terminal domain BED33_06535 PF14841 FliG middle domain BED33_06535 PF14842 FliG N-terminal domain BED33_06540 PF02108 BED33_06540 BED33_06540 PF09811 BED33_06540 BED33_06545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_06550 PF02050 Flagellar FliJ protein BED33_06555 PF05130 FlgN protein BED33_06560 PF04316 Anti-sigma-28 factor, FlgM BED33_06565 PF13144 SAF-like BED33_06570 PF00460 Flagella basal body rod protein BED33_06575 PF00460 Flagella basal body rod protein BED33_06575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_06580 PF03963 BED33_06580 BED33_06580 PF13860 FlgD Ig-like domain BED33_06580 PF13861 FlgD Tudor-like domain BED33_06585 PF00460 Flagella basal body rod protein BED33_06585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_06585 PF07559 Flagellar basal body protein FlaE BED33_06590 PF00460 Flagella basal body rod protein BED33_06590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_06595 PF00460 Flagella basal body rod protein BED33_06595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_06600 PF02107 BED33_06600 BED33_06605 PF02119 BED33_06605 BED33_06610 PF10135 BED33_06610 BED33_06615 PF00460 Flagella basal body rod protein BED33_06615 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_06620 PF00669 Bacterial flagellin N-terminal helical region BED33_06620 PF00700 Bacterial flagellin C-terminal helical region BED33_06640 PF00669 Bacterial flagellin N-terminal helical region BED33_06640 PF00700 Bacterial flagellin C-terminal helical region BED33_06650 PF02561 Flagellar protein FliS BED33_06665 PF03748 BED33_06665 BED33_06670 PF04539 Sigma-70 region 3 BED33_06670 PF04542 Sigma-70 region 2 BED33_06670 PF04545 Sigma-70, region 4 BED33_06675 PF01618 BED33_06675 BED33_06680 PF00691 OmpA family BED33_06680 PF13677 BED33_06680 BED33_06685 PF05433 BED33_06685 BED33_06690 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED33_06690 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BED33_06695 PF13247 4Fe-4S dicluster domain BED33_06705 PF00374 Nickel-dependent hydrogenase BED33_06710 PF01750 Hydrogenase maturation protease BED33_06715 PF11939 Protein of unknown function (DUF3457) BED33_06720 PF01155 Hydrogenase expression/synthesis hypA family BED33_06725 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED33_06730 PF01455 HupF/HypC family BED33_06735 PF01924 Hydrogenase formation hypA family BED33_06740 PF00586 AIR synthase related protein, N-terminal domain BED33_06740 PF02769 AIR synthase related protein, C-terminal domain BED33_06745 PF00708 Acylphosphatase BED33_06745 PF01300 Telomere recombination BED33_06745 PF07503 HypF finger BED33_06750 PF02661 Fic/DOC family BED33_06750 PF08279 HTH domain BED33_06755 PF02110 Hydroxyethylthiazole kinase family BED33_06765 PF11769 BED33_06765 BED33_06770 PF00563 EAL domain BED33_06770 PF00989 PAS fold BED33_06770 PF00990 GGDEF domain BED33_06770 PF05228 BED33_06770 BED33_06775 PF16576 BED33_06775 BED33_06790 PF00083 Sugar (and other) transporter BED33_06790 PF08946 Osmosensory transporter coiled coil BED33_06800 PF00857 Isochorismatase family BED33_06805 PF01895 PhoU domain BED33_06805 PF02690 BED33_06805 BED33_06810 PF01156 Inosine-uridine preferring nucleoside hydrolase BED33_06815 PF00356 Bacterial regulatory proteins, lacI family BED33_06815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_06820 PF01548 BED33_06820 BED33_06820 PF02371 BED33_06820 BED33_06825 PF00083 Sugar (and other) transporter BED33_06830 PF00155 Aminotransferase class I and II BED33_06830 PF00392 Bacterial regulatory proteins, gntR family BED33_06840 PF00891 O-methyltransferase BED33_06845 PF00891 O-methyltransferase BED33_06850 PF01497 Periplasmic binding protein BED33_06855 PF01032 FecCD transport family BED33_06860 PF01032 FecCD transport family BED33_06870 PF00557 Metallopeptidase family M24 BED33_06875 PF11903 BED33_06875 BED33_06885 PF17090 BED33_06885 BED33_06890 PF13437 HlyD family secretion protein BED33_06890 PF13533 Biotin-lipoyl like BED33_06895 PF04632 BED33_06895 BED33_06905 PF01276 Orn/Lys/Arg decarboxylase, major domain BED33_06905 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED33_06905 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED33_06910 PF13520 Amino acid permease BED33_06920 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family BED33_06930 PF03811 BED33_06930 BED33_06930 PF12759 BED33_06930 BED33_06935 PF07514 Putative helicase BED33_06935 PF07515 Protein of unknown function (DUF1528) BED33_06950 PF00589 Phage integrase family BED33_06965 PF01276 Orn/Lys/Arg decarboxylase, major domain BED33_06965 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED33_06965 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED33_06970 PF01925 BED33_06970 BED33_06975 PF01464 Transglycosylase SLT domain BED33_06975 PF11873 Domain of unknown function (DUF3393) BED33_06980 PF04362 Bacterial Fe(2+) trafficking BED33_06985 PF00633 Helix-hairpin-helix motif BED33_06985 PF00730 HhH-GPD superfamily base excision DNA repair protein BED33_06985 PF10576 Iron-sulfur binding domain of endonuclease III BED33_06985 PF14815 NUDIX domain BED33_06990 PF02390 Putative methyltransferase BED33_06995 PF04320 BED33_06995 BED33_07000 PF04960 Glutaminase BED33_07005 PF11101 BED33_07005 BED33_07010 PF04055 Radical SAM superfamily BED33_07010 PF06969 HemN C-terminal domain BED33_07015 PF01725 Ham1 family BED33_07020 PF02594 Uncharacterised ACR, YggU family COG1872 BED33_07025 PF02325 BED33_07025 BED33_07030 PF03807 NADP oxidoreductase coenzyme F420-dependent BED33_07030 PF14748 Pyrroline-5-carboxylate reductase dimerisation BED33_07035 PF01168 Alanine racemase, N-terminal domain BED33_07040 PF00437 Type II/IV secretion system protein BED33_07045 PF04371 Porphyromonas-type peptidyl-arginine deiminase BED33_07050 PF00795 Carbon-nitrogen hydrolase BED33_07055 PF03652 Uncharacterised protein family (UPF0081) BED33_07060 PF02622 Uncharacterized ACR, COG1678 BED33_07065 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BED33_07065 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BED33_07070 PF04452 RNA methyltransferase BED33_07075 PF04231 Endonuclease I BED33_07080 PF10263 BED33_07080 BED33_07080 PF17283 BED33_07080 BED33_07085 PF01022 Bacterial regulatory protein, arsR family BED33_07090 PF00872 BED33_07090 BED33_07095 PF04143 BED33_07095 BED33_07100 PF04143 BED33_07100 BED33_07105 PF00438 S-adenosylmethionine synthetase, N-terminal domain BED33_07105 PF02772 S-adenosylmethionine synthetase, central domain BED33_07105 PF02773 S-adenosylmethionine synthetase, C-terminal domain BED33_07110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED33_07115 PF00355 Rieske [2Fe-2S] domain BED33_07120 PF01435 Peptidase family M48 BED33_07125 PF00456 Transketolase, thiamine diphosphate binding domain BED33_07125 PF02779 Transketolase, pyrimidine binding domain BED33_07125 PF02780 Transketolase, C-terminal domain BED33_07130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED33_07130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED33_07135 PF00162 Phosphoglycerate kinase BED33_07140 PF01116 Fructose-bisphosphate aldolase class-II BED33_07145 PF00102 Protein-tyrosine phosphatase BED33_07150 PF00924 Mechanosensitive ion channel BED33_07150 PF05552 Conserved TM helix BED33_07155 PF01548 BED33_07155 BED33_07155 PF02371 BED33_07155 BED33_07160 PF01810 BED33_07160 BED33_07165 PF04402 Protein of unknown function (DUF541) BED33_07170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_07170 PF03466 LysR substrate binding domain BED33_07175 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BED33_07180 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED33_07180 PF01842 ACT domain BED33_07180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_07185 PF13518 Helix-turn-helix domain BED33_07215 PF04055 Radical SAM superfamily BED33_07215 PF13394 4Fe-4S single cluster domain BED33_07235 PF01242 6-pyruvoyl tetrahydropterin synthase BED33_07240 PF00175 Oxidoreductase NAD-binding domain BED33_07240 PF00258 Flavodoxin BED33_07240 PF00667 FAD binding domain BED33_07245 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED33_07245 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED33_07250 PF01507 Phosphoadenosine phosphosulfate reductase family BED33_07255 PF15919 BED33_07255 BED33_07260 PF07927 YcfA-like protein BED33_07265 PF04389 Peptidase family M28 BED33_07270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_07270 PF10414 Sirohaem synthase dimerisation region BED33_07270 PF13241 Putative NAD(P)-binding BED33_07270 PF14824 Sirohaem biosynthesis protein central BED33_07275 PF01507 Phosphoadenosine phosphosulfate reductase family BED33_07280 PF00009 Elongation factor Tu GTP binding domain BED33_07285 PF01583 Adenylylsulphate kinase BED33_07290 PF12084 BED33_07290 BED33_07295 PF04977 Septum formation initiator BED33_07300 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BED33_07305 PF02542 YgbB family BED33_07310 PF01142 tRNA pseudouridine synthase D (TruD) BED33_07315 PF01975 Survival protein SurE BED33_07320 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BED33_07325 PF01476 LysM domain BED33_07325 PF01551 Peptidase family M23 BED33_07330 PF00140 Sigma-70 factor, region 1 BED33_07330 PF04539 Sigma-70 region 3 BED33_07330 PF04542 Sigma-70 region 2 BED33_07330 PF04545 Sigma-70, region 4 BED33_07335 PF00488 MutS domain V BED33_07335 PF01624 MutS domain I BED33_07335 PF05188 MutS domain II BED33_07335 PF05190 MutS family domain IV BED33_07335 PF05192 MutS domain III BED33_07340 PF04932 BED33_07340 BED33_07340 PF11846 BED33_07340 BED33_07340 PF15864 BED33_07340 BED33_07345 PF04703 FaeA-like protein BED33_07350 PF00419 Fimbrial protein BED33_07360 PF00577 Outer membrane usher protein BED33_07360 PF13953 PapC C-terminal domain BED33_07360 PF13954 PapC N-terminal domain BED33_07365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_07365 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_07370 PF00419 Fimbrial protein BED33_07375 PF00419 Fimbrial protein BED33_07380 PF00419 Fimbrial protein BED33_07390 PF15959 BED33_07390 BED33_07395 PF01323 DSBA-like thioredoxin domain BED33_07405 PF00005 ABC transporter BED33_07405 PF00664 ABC transporter transmembrane region BED33_07405 PF03412 Peptidase C39 family BED33_07410 PF16576 BED33_07410 BED33_07415 PF00005 ABC transporter BED33_07415 PF02687 BED33_07415 BED33_07415 PF12704 MacB-like periplasmic core domain BED33_07420 PF02321 Outer membrane efflux protein BED33_07425 PF00109 Beta-ketoacyl synthase, N-terminal domain BED33_07425 PF02801 Beta-ketoacyl synthase, C-terminal domain BED33_07430 PF01575 MaoC like domain BED33_07435 PF00550 Phosphopantetheine attachment site BED33_07440 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_07445 PF00155 Aminotransferase class I and II BED33_07450 PF00034 Cytochrome c BED33_07450 PF03150 Di-haem cytochrome c peroxidase BED33_07450 PF14376 BED33_07450 BED33_07455 PF07883 Cupin domain BED33_07460 PF00009 Elongation factor Tu GTP binding domain BED33_07460 PF00679 Elongation factor G C-terminus BED33_07460 PF03144 Elongation factor Tu domain 2 BED33_07460 PF03764 Elongation factor G, domain IV BED33_07460 PF14492 Elongation Factor G, domain II BED33_07465 PF12840 Helix-turn-helix domain BED33_07470 PF00107 Zinc-binding dehydrogenase BED33_07470 PF08240 Alcohol dehydrogenase GroES-like domain BED33_07475 PF03613 BED33_07475 BED33_07480 PF03609 BED33_07480 BED33_07490 PF03610 PTS system fructose IIA component BED33_07495 PF04198 Putative sugar-binding domain BED33_07500 PF00795 Carbon-nitrogen hydrolase BED33_07505 PF03861 ANTAR domain BED33_07510 PF13433 Periplasmic binding protein domain BED33_07515 PF03069 Acetamidase/Formamidase family BED33_07520 PF00005 ABC transporter BED33_07525 PF00005 ABC transporter BED33_07530 PF02653 BED33_07530 BED33_07535 PF02653 BED33_07535 BED33_07540 PF13433 Periplasmic binding protein domain BED33_07545 PF05681 BED33_07545 BED33_07545 PF05683 Fumarase C-terminus BED33_07550 PF00384 Molybdopterin oxidoreductase BED33_07550 PF01568 Molydopterin dinucleotide binding domain BED33_07550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED33_07555 PF12800 4Fe-4S binding domain BED33_07555 PF13247 4Fe-4S dicluster domain BED33_07560 PF04976 BED33_07560 BED33_07565 PF02613 Nitrate reductase delta subunit BED33_07570 PF01548 BED33_07570 BED33_07570 PF02371 BED33_07570 BED33_07575 PF07690 Major Facilitator Superfamily BED33_07580 PF02464 Competence-damaged protein BED33_07585 PF00154 recA bacterial DNA recombination protein BED33_07590 PF02631 RecX family BED33_07595 PF01411 tRNA synthetases class II (A) BED33_07595 PF02272 DHHA1 domain BED33_07595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED33_07600 PF02599 Global regulator protein family BED33_07620 PF13419 Haloacid dehalogenase-like hydrolase BED33_07630 PF04262 Glutamate-cysteine ligase BED33_07635 PF02664 S-Ribosylhomocysteinase (LuxS) BED33_07640 PF03471 Transporter associated domain BED33_07645 PF01548 BED33_07645 BED33_07645 PF02371 BED33_07645 BED33_07655 PF01578 BED33_07655 BED33_07660 PF00448 SRP54-type protein, GTPase domain BED33_07660 PF02881 SRP54-type protein, helical bundle domain BED33_07660 PF02978 Signal peptide binding domain BED33_07665 PF00886 Ribosomal protein S16 BED33_07670 PF01782 RimM N-terminal domain BED33_07670 PF05239 PRC-barrel domain BED33_07675 PF01746 tRNA (Guanine-1)-methyltransferase BED33_07680 PF01245 Ribosomal protein L19 BED33_07690 PF03605 BED33_07690 BED33_07695 PF00072 Response regulator receiver domain BED33_07695 PF04397 LytTr DNA-binding domain BED33_07700 PF00793 DAHP synthetase I family BED33_07705 PF01817 Chorismate mutase type II BED33_07705 PF02153 Prephenate dehydrogenase BED33_07710 PF00800 Prephenate dehydratase BED33_07710 PF01817 Chorismate mutase type II BED33_07715 PF01548 BED33_07715 BED33_07715 PF02371 BED33_07715 BED33_07720 PF00004 ATPase family associated with various cellular activities (AAA) BED33_07720 PF02861 Clp amino terminal domain BED33_07720 PF07724 AAA domain (Cdc48 subfamily) BED33_07720 PF10431 C-terminal, D2-small domain, of ClpB protein BED33_07725 PF02578 Multi-copper polyphenol oxidoreductase laccase BED33_07730 PF00849 RNA pseudouridylate synthase BED33_07730 PF01479 S4 domain BED33_07735 PF13525 Outer membrane lipoprotein BED33_07745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED33_07750 PF00872 BED33_07750 BED33_07755 PF01548 BED33_07755 BED33_07755 PF02371 BED33_07755 BED33_07785 PF10043 BED33_07785 BED33_07790 PF13091 PLD-like domain BED33_07795 PF00583 Acetyltransferase (GNAT) family BED33_07795 PF13380 CoA binding domain BED33_07795 PF13549 ATP-grasp domain BED33_07795 PF13607 Succinyl-CoA ligase like flavodoxin domain BED33_07800 PF03942 BED33_07800 BED33_07805 PF00085 Thioredoxin BED33_07810 PF00588 SpoU rRNA Methylase family BED33_07810 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED33_07815 PF07690 Major Facilitator Superfamily BED33_07820 PF00529 HlyD family secretion protein BED33_07820 PF16576 BED33_07820 BED33_07825 PF02321 Outer membrane efflux protein BED33_07830 PF01047 MarR family BED33_07835 PF05437 BED33_07835 BED33_07840 PF03591 BED33_07840 BED33_07845 PF07690 Major Facilitator Superfamily BED33_07855 PF11533 Protein of unknown function (DUF3225) BED33_07860 PF01425 Amidase BED33_07865 PF13318 BED33_07865 BED33_07870 PF01380 SIS domain BED33_07870 PF01418 Helix-turn-helix domain, rpiR family BED33_07875 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_07880 PF00528 Binding-protein-dependent transport system inner membrane component BED33_07885 PF00528 Binding-protein-dependent transport system inner membrane component BED33_07890 PF00005 ABC transporter BED33_07905 PF00795 Carbon-nitrogen hydrolase BED33_07910 PF00155 Aminotransferase class I and II BED33_07915 PF00589 Phage integrase family BED33_07915 PF12167 BED33_07915 BED33_07920 PF06806 Putative excisionase (DUF1233) BED33_07925 PF05063 BED33_07925 BED33_07965 PF03837 BED33_07965 BED33_07970 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED33_08010 PF10965 BED33_08010 BED33_08015 PF15968 BED33_08015 BED33_08020 PF15969 BED33_08020 BED33_08025 PF00717 Peptidase S24-like BED33_08025 PF01381 Helix-turn-helix BED33_08030 PF09048 Cro BED33_08035 PF05269 Bacteriophage CII protein BED33_08045 PF04492 BED33_08045 BED33_08050 PF01695 IstB-like ATP binding protein BED33_08065 PF04448 BED33_08065 BED33_08075 PF05772 NinB protein BED33_08085 PF07102 Protein of unknown function (DUF1364) BED33_08090 PF05866 Endodeoxyribonuclease RusA BED33_08100 PF03589 Antitermination protein BED33_08115 PF00959 Phage lysozyme BED33_08120 PF03245 BED33_08120 BED33_08125 PF09669 BED33_08125 BED33_08130 PF11133 Head fiber protein BED33_08155 PF06381 BED33_08155 BED33_08160 PF04233 BED33_08160 BED33_08170 PF09979 BED33_08170 BED33_08190 PF13262 BED33_08190 BED33_08210 PF11863 BED33_08210 BED33_08225 PF01464 Transglycosylase SLT domain BED33_08255 PF06890 Bacteriophage Mu Gp45 protein BED33_08265 PF04865 BED33_08265 BED33_08285 PF00596 Class II Aldolase and Adducin N-terminal domain BED33_08295 PF03079 ARD/ARD' family BED33_08300 PF01008 Initiation factor 2 subunit family BED33_08305 PF01636 Phosphotransferase enzyme family BED33_08310 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED33_08310 PF08479 POTRA domain, ShlB-type BED33_08325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED33_08325 PF02770 Acyl-CoA dehydrogenase, middle domain BED33_08325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BED33_08325 PF09317 BED33_08325 BED33_08330 PF13580 SIS domain BED33_08335 PF13230 Glutamine amidotransferases class-II BED33_08340 PF03734 L,D-transpeptidase catalytic domain BED33_08345 PF05896 BED33_08345 BED33_08345 PF11973 BED33_08345 BED33_08350 PF03116 BED33_08350 BED33_08355 PF04205 FMN-binding domain BED33_08360 PF02508 BED33_08360 BED33_08370 PF00111 2Fe-2S iron-sulfur cluster binding domain BED33_08370 PF00175 Oxidoreductase NAD-binding domain BED33_08370 PF00970 Oxidoreductase FAD-binding domain BED33_08375 PF02424 ApbE family BED33_08380 PF04400 BED33_08380 BED33_08385 PF03009 Glycerophosphoryl diester phosphodiesterase family BED33_08390 PF01820 D-ala D-ala ligase N-terminus BED33_08390 PF07478 D-ala D-ala ligase C-terminus BED33_08395 PF08348 BED33_08395 BED33_08395 PF13309 BED33_08395 BED33_08400 PF00291 Pyridoxal-phosphate dependent enzyme BED33_08410 PF00817 impB/mucB/samB family BED33_08410 PF11798 IMS family HHH motif BED33_08410 PF11799 impB/mucB/samB family C-terminal domain BED33_08415 PF01546 Peptidase family M20/M25/M40 BED33_08415 PF07687 Peptidase dimerisation domain BED33_08420 PF00156 Phosphoribosyl transferase domain BED33_08425 PF01548 BED33_08425 BED33_08425 PF02371 BED33_08425 BED33_08430 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) BED33_08435 PF07417 Transcriptional regulator Crl BED33_08440 PF00696 Amino acid kinase family BED33_08440 PF01472 PUA domain BED33_08445 PF00171 Aldehyde dehydrogenase family BED33_08450 PF00392 Bacterial regulatory proteins, gntR family BED33_08450 PF07702 UTRA domain BED33_08455 PF00367 phosphotransferase system, EIIB BED33_08455 PF02378 Phosphotransferase system, EIIC BED33_08460 PF02056 Family 4 glycosyl hydrolase BED33_08460 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED33_08465 PF07238 PilZ domain BED33_08465 PF07317 Flagellar regulator YcgR BED33_08470 PF06165 Glycosyltransferase family 36 BED33_08470 PF10091 Putative glucoamylase BED33_08470 PF17167 BED33_08470 BED33_08480 PF00583 Acetyltransferase (GNAT) family BED33_08485 PF08241 Methyltransferase domain BED33_08490 PF07338 Protein of unknown function (DUF1471) BED33_08505 PF00593 TonB dependent receptor BED33_08505 PF07715 TonB-dependent Receptor Plug Domain BED33_08510 PF01202 Shikimate kinase BED33_08515 PF06865 Protein of unknown function (DUF1255) BED33_08520 PF04381 Putative exonuclease, RdgC BED33_08525 PF00480 ROK family BED33_08530 PF13476 AAA domain BED33_08530 PF13558 Putative exonuclease SbcCD, C subunit BED33_08535 PF00149 Calcineurin-like phosphoesterase BED33_08535 PF12320 Type 5 capsule protein repressor C-terminal domain BED33_08540 PF00072 Response regulator receiver domain BED33_08540 PF00486 Transcriptional regulatory protein, C terminal BED33_08545 PF00512 His Kinase A (phospho-acceptor) domain BED33_08545 PF00989 PAS fold BED33_08545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_08545 PF11808 BED33_08545 BED33_08550 PF12849 PBP superfamily domain BED33_08555 PF05525 BED33_08555 BED33_08560 PF00324 Amino acid permease BED33_08565 PF00128 Alpha amylase, catalytic domain BED33_08565 PF02903 Alpha amylase, N-terminal ig-like domain BED33_08570 PF00106 short chain dehydrogenase BED33_08575 PF01019 Gamma-glutamyltranspeptidase BED33_08580 PF01848 BED33_08580 BED33_08585 PF00578 AhpC/TSA family BED33_08585 PF10417 C-terminal domain of 1-Cys peroxiredoxin BED33_08590 PF04336 BED33_08590 BED33_08595 PF02547 Queuosine biosynthesis protein BED33_08600 PF12697 Alpha/beta hydrolase family BED33_08605 PF01702 Queuine tRNA-ribosyltransferase BED33_08610 PF02699 Preprotein translocase subunit BED33_08615 PF02355 Protein export membrane protein BED33_08615 PF07549 SecD/SecF GG Motif BED33_08615 PF13721 SecD export protein N-terminal TM region BED33_08620 PF02355 Protein export membrane protein BED33_08620 PF07549 SecD/SecF GG Motif BED33_08635 PF03477 ATP cone domain BED33_08640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED33_08640 PF01872 RibD C-terminal domain BED33_08645 PF00885 6,7-dimethyl-8-ribityllumazine synthase BED33_08650 PF01029 NusB family BED33_08655 PF00586 AIR synthase related protein, N-terminal domain BED33_08655 PF02769 AIR synthase related protein, C-terminal domain BED33_08660 PF04608 Phosphatidylglycerophosphatase A BED33_08665 PF01548 BED33_08665 BED33_08665 PF02371 BED33_08665 BED33_08670 PF02779 Transketolase, pyrimidine binding domain BED33_08670 PF02780 Transketolase, C-terminal domain BED33_08670 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BED33_08675 PF00348 Polyprenyl synthetase BED33_08680 PF02609 Exonuclease VII small subunit BED33_08685 PF02568 Thiamine biosynthesis protein (ThiI) BED33_08685 PF02926 THUMP domain BED33_08690 PF01965 DJ-1/PfpI family BED33_08695 PF02558 Ketopantoate reductase PanE/ApbA BED33_08695 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED33_08700 PF04461 Protein of unknown function (DUF520) BED33_08705 PF07690 Major Facilitator Superfamily BED33_08710 PF01040 UbiA prenyltransferase family BED33_08715 PF03626 BED33_08715 BED33_08720 PF00510 Cytochrome c oxidase subunit III BED33_08725 PF00115 Cytochrome C and Quinol oxidase polypeptide I BED33_08730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BED33_08730 PF06481 COX Aromatic Rich Motif BED33_08735 PF03502 Nucleoside-specific channel-forming protein, Tsx BED33_08740 PF07690 Major Facilitator Superfamily BED33_08745 PF03923 BED33_08745 BED33_08745 PF08139 BED33_08745 BED33_08750 PF01722 BolA-like protein BED33_08760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED33_08760 PF05697 Bacterial trigger factor protein (TF) BED33_08760 PF05698 Bacterial trigger factor protein (TF) C-terminus BED33_08765 PF00574 Clp protease BED33_08770 PF06689 ClpX C4-type zinc finger BED33_08770 PF07724 AAA domain (Cdc48 subfamily) BED33_08770 PF10431 C-terminal, D2-small domain, of ClpB protein BED33_08775 PF00004 ATPase family associated with various cellular activities (AAA) BED33_08775 PF02190 ATP-dependent protease La (LON) domain BED33_08775 PF05362 Lon protease (S16) C-terminal proteolytic domain BED33_08780 PF00216 Bacterial DNA-binding protein BED33_08785 PF13145 PPIC-type PPIASE domain BED33_08785 PF13624 SurA N-terminal domain BED33_08790 PF12836 Helix-hairpin-helix motif BED33_08795 PF13279 Thioesterase-like superfamily BED33_08800 PF06508 Queuosine biosynthesis protein QueC BED33_08805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_08805 PF12793 BED33_08805 BED33_08810 PF08282 haloacid dehalogenase-like hydrolase BED33_08815 PF00291 Pyridoxal-phosphate dependent enzyme BED33_08820 PF01037 AsnC family BED33_08820 PF13412 Winged helix-turn-helix DNA-binding BED33_08825 PF00005 ABC transporter BED33_08825 PF00664 ABC transporter transmembrane region BED33_08830 PF00005 ABC transporter BED33_08830 PF00664 ABC transporter transmembrane region BED33_08835 PF00543 Nitrogen regulatory protein P-II BED33_08840 PF00909 Ammonium Transporter Family BED33_08845 PF13622 Thioesterase-like superfamily BED33_08850 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED33_08855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED33_08865 PF05321 Haemolysin expression modulating protein BED33_08870 PF10757 BED33_08870 BED33_08880 PF00005 ABC transporter BED33_08885 PF00950 BED33_08885 BED33_08890 PF01297 Periplasmic solute binding protein family BED33_08895 PF00444 Ribosomal protein L36 BED33_08900 PF01197 Ribosomal protein L31 BED33_08905 PF10797 BED33_08905 BED33_08910 PF10941 BED33_08910 BED33_08915 PF01676 Metalloenzyme superfamily BED33_08920 PF01168 Alanine racemase, N-terminal domain BED33_08925 PF00874 PRD domain BED33_08930 PF00873 AcrB/AcrD/AcrF family BED33_08935 PF00529 HlyD family secretion protein BED33_08935 PF16576 BED33_08935 BED33_08940 PF00440 Bacterial regulatory proteins, tetR family BED33_08940 PF08361 MAATS-type transcriptional repressor, C-terminal region BED33_08945 PF02635 DsrE/DsrF-like family BED33_08955 PF10689 BED33_08955 BED33_08960 PF07445 Primosomal replication protein priB and priC BED33_08965 PF04304 BED33_08965 BED33_08970 PF00156 Phosphoribosyl transferase domain BED33_08975 PF12168 BED33_08975 BED33_08975 PF12169 DNA polymerase III subunits gamma and tau domain III BED33_08975 PF12170 DNA polymerase III tau subunit V interacting with alpha BED33_08975 PF13177 DNA polymerase III, delta subunit BED33_08980 PF02575 YbaB/EbfC DNA-binding family BED33_08985 PF02132 RecR protein BED33_08985 PF13662 Toprim domain BED33_08990 PF00183 Hsp90 protein BED33_08990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_08995 PF00406 Adenylate kinase BED33_08995 PF05191 Adenylate kinase, active site lid BED33_09000 PF00762 Ferrochelatase BED33_09005 PF01943 BED33_09005 BED33_09010 PF00535 Glycosyl transferase family 2 BED33_09015 PF00535 Glycosyl transferase family 2 BED33_09020 PF00534 Glycosyl transferases group 1 BED33_09020 PF13439 Glycosyltransferase Family 4 BED33_09025 PF00534 Glycosyl transferases group 1 BED33_09030 PF00953 Glycosyl transferase family 4 BED33_09035 PF02719 Polysaccharide biosynthesis protein BED33_09040 PF00534 Glycosyl transferases group 1 BED33_09040 PF13439 Glycosyltransferase Family 4 BED33_09045 PF01370 NAD dependent epimerase/dehydratase family BED33_09050 PF00294 pfkB family carbohydrate kinase BED33_09055 PF00999 Sodium/hydrogen exchanger family BED33_09055 PF02254 TrkA-N domain BED33_09060 PF07690 Major Facilitator Superfamily BED33_09075 PF04073 Aminoacyl-tRNA editing domain BED33_09080 PF01963 BED33_09080 BED33_09085 PF00122 E1-E2 ATPase BED33_09085 PF00403 Heavy-metal-associated domain BED33_09085 PF00702 haloacid dehalogenase-like hydrolase BED33_09090 PF13411 MerR HTH family regulatory protein BED33_09095 PF01957 NfeD-like C-terminal, partner-binding BED33_09100 PF01145 SPFH domain / Band 7 family BED33_09105 PF00085 Thioredoxin BED33_09105 PF14559 Tetratricopeptide repeat BED33_09105 PF14561 Tetratricopeptide repeat BED33_09110 PF00106 short chain dehydrogenase BED33_09115 PF13472 GDSL-like Lipase/Acylhydrolase family BED33_09120 PF00005 ABC transporter BED33_09125 PF02687 BED33_09125 BED33_09130 PF02222 ATP-grasp domain BED33_09135 PF00731 AIR carboxylase BED33_09140 PF00149 Calcineurin-like phosphoesterase BED33_09145 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED33_09150 PF01406 tRNA synthetases class I (C) catalytic domain BED33_09150 PF09190 DALR domain BED33_09155 PF13275 S4 domain BED33_09160 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BED33_09160 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BED33_09170 PF00589 Phage integrase family BED33_09175 PF05063 BED33_09175 BED33_09215 PF03837 BED33_09215 BED33_09220 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED33_09260 PF00717 Peptidase S24-like BED33_09270 PF05269 Bacteriophage CII protein BED33_09285 PF01695 IstB-like ATP binding protein BED33_09300 PF04448 BED33_09300 BED33_09310 PF05772 NinB protein BED33_09320 PF07102 Protein of unknown function (DUF1364) BED33_09325 PF05866 Endodeoxyribonuclease RusA BED33_09335 PF03589 Antitermination protein BED33_09345 PF16083 BED33_09345 BED33_09350 PF13539 D-alanyl-D-alanine carboxypeptidase BED33_09355 PF10721 BED33_09355 BED33_09370 PF06440 DNA polymerase III, theta subunit BED33_09390 PF05876 BED33_09390 BED33_09395 PF02831 gpW BED33_09400 PF05136 BED33_09400 BED33_09405 PF01343 Peptidase family S49 BED33_09415 PF02924 Bacteriophage lambda head decoration protein D BED33_09420 PF03864 Phage major capsid protein E BED33_09440 PF10948 BED33_09440 BED33_09445 PF04984 Phage tail sheath protein BED33_09445 PF17482 BED33_09445 BED33_09450 PF10618 BED33_09450 BED33_09455 PF10109 BED33_09455 BED33_09460 PF01464 Transglycosylase SLT domain BED33_09465 PF07157 BED33_09465 BED33_09470 PF05954 Phage late control gene D protein (GPD) BED33_09475 PF06890 Bacteriophage Mu Gp45 protein BED33_09480 PF07409 BED33_09480 BED33_09485 PF04865 BED33_09485 BED33_09490 PF10076 BED33_09490 BED33_09505 PF01757 BED33_09505 BED33_09510 PF00589 Phage integrase family BED33_09515 PF05063 BED33_09515 BED33_09595 PF10965 BED33_09595 BED33_09600 PF15968 BED33_09600 BED33_09605 PF15969 BED33_09605 BED33_09610 PF00717 Peptidase S24-like BED33_09610 PF01381 Helix-turn-helix BED33_09615 PF15943 BED33_09615 BED33_09620 PF05269 Bacteriophage CII protein BED33_09625 PF02767 DNA polymerase III beta subunit, central domain BED33_09630 PF04492 BED33_09630 BED33_09635 PF00772 DnaB-like helicase N terminal domain BED33_09635 PF03796 DnaB-like helicase C terminal domain BED33_09660 PF15944 BED33_09660 BED33_09665 PF07105 BED33_09665 BED33_09675 PF01844 HNH endonuclease BED33_09680 PF10765 Protein of unknown function (DUF2591) BED33_09685 PF00149 Calcineurin-like phosphoesterase BED33_09695 PF05766 BED33_09695 BED33_09705 PF06530 BED33_09705 BED33_09720 PF16083 BED33_09720 BED33_09725 PF00959 Phage lysozyme BED33_09730 PF03245 BED33_09730 BED33_09735 PF04383 KilA-N domain BED33_09755 PF10045 BED33_09755 BED33_09765 PF13264 BED33_09765 BED33_09775 PF11651 P22 coat protein - gene protein 5 BED33_09820 PF03869 Arc-like DNA binding domain BED33_09825 PF02498 BED33_09825 BED33_09830 PF03374 BED33_09830 BED33_09830 PF04383 KilA-N domain BED33_09870 PF04865 BED33_09870 BED33_09890 PF13356 Domain of unknown function (DUF4102) BED33_09895 PF00589 Phage integrase family BED33_09915 PF02661 Fic/DOC family BED33_09915 PF13784 Fic/DOC family N-terminal BED33_09925 PF05973 BED33_09925 BED33_09930 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED33_09980 PF00072 Response regulator receiver domain BED33_09980 PF00486 Transcriptional regulatory protein, C terminal BED33_09985 PF01738 Dienelactone hydrolase family BED33_09990 PF01548 BED33_09990 BED33_09990 PF02371 BED33_09990 BED33_10000 PF08007 Cupin superfamily protein BED33_10010 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED33_10015 PF00005 ABC transporter BED33_10015 PF00664 ABC transporter transmembrane region BED33_10020 PF03992 Antibiotic biosynthesis monooxygenase BED33_10025 PF08971 Glycogen synthesis protein BED33_10030 PF00149 Calcineurin-like phosphoesterase BED33_10045 PF00313 'Cold-shock' DNA-binding domain BED33_10050 PF00313 'Cold-shock' DNA-binding domain BED33_10055 PF02537 BED33_10055 BED33_10060 PF00990 GGDEF domain BED33_10060 PF05230 BED33_10060 BED33_10065 PF02416 mttA/Hcf106 family BED33_10070 PF04055 Radical SAM superfamily BED33_10070 PF16881 BED33_10070 BED33_10075 PF03099 Biotin/lipoate A/B protein ligase family BED33_10080 PF04359 Protein of unknown function (DUF493) BED33_10085 PF00768 D-alanyl-D-alanine carboxypeptidase BED33_10085 PF07943 Penicillin-binding protein 5, C-terminal domain BED33_10090 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel BED33_10090 PF05036 Sporulation related domain BED33_10095 PF01098 BED33_10095 BED33_10100 PF00905 Penicillin binding protein transpeptidase domain BED33_10100 PF03717 Penicillin-binding Protein dimerisation domain BED33_10105 PF02590 Predicted SPOUT methyltransferase BED33_10110 PF02410 Oligomerisation domain BED33_10115 PF01467 Cytidylyltransferase BED33_10120 PF06144 DNA polymerase III, delta subunit BED33_10120 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BED33_10125 PF04390 Lipopolysaccharide-assembly BED33_10130 PF00133 tRNA synthetases class I (I, L, M and V) BED33_10130 PF08264 Anticodon-binding domain of tRNA BED33_10130 PF13603 Leucyl-tRNA synthetase, Domain 2 BED33_10135 PF07295 BED33_10135 BED33_10140 PF00005 ABC transporter BED33_10145 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10150 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10155 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_10160 PF01243 Pyridoxamine 5'-phosphate oxidase BED33_10165 PF00795 Carbon-nitrogen hydrolase BED33_10170 PF00571 CBS domain BED33_10170 PF03471 Transporter associated domain BED33_10180 PF02562 PhoH-like protein BED33_10185 PF00919 Uncharacterized protein family UPF0004 BED33_10185 PF01938 TRAM domain BED33_10185 PF04055 Radical SAM superfamily BED33_10190 PF01494 FAD binding domain BED33_10225 PF00733 Asparagine synthase BED33_10225 PF13537 Glutamine amidotransferase domain BED33_10230 PF13242 HAD-hyrolase-like BED33_10230 PF13344 Haloacid dehalogenase-like hydrolase BED33_10235 PF00480 ROK family BED33_10235 PF01047 MarR family BED33_10240 PF01979 Amidohydrolase family BED33_10245 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BED33_10255 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED33_10255 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BED33_10260 PF03573 outer membrane porin, OprD family BED33_10265 PF13982 BED33_10265 BED33_10270 PF00728 Glycosyl hydrolase family 20, catalytic domain BED33_10270 PF02838 Glycosyl hydrolase family 20, domain 2 BED33_10270 PF03173 Putative carbohydrate binding domain BED33_10270 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BED33_10275 PF01475 Ferric uptake regulator family BED33_10280 PF00258 Flavodoxin BED33_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_10285 PF02203 Tar ligand binding domain homologue BED33_10290 PF01402 Ribbon-helix-helix protein, copG family BED33_10295 PF12697 Alpha/beta hydrolase family BED33_10300 PF03925 SeqA protein BED33_10300 PF17206 BED33_10300 BED33_10305 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED33_10305 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED33_10305 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED33_10305 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED33_10315 PF00892 EamA-like transporter family BED33_10320 PF00072 Response regulator receiver domain BED33_10320 PF00486 Transcriptional regulatory protein, C terminal BED33_10325 PF00512 His Kinase A (phospho-acceptor) domain BED33_10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_10325 PF02702 Osmosensitive K+ channel His kinase sensor domain BED33_10325 PF13492 GAF domain BED33_10325 PF13493 Domain of unknown function (DUF4118) BED33_10330 PF02669 BED33_10330 BED33_10335 PF00122 E1-E2 ATPase BED33_10335 PF00702 haloacid dehalogenase-like hydrolase BED33_10340 PF03814 BED33_10340 BED33_10345 PF09604 BED33_10345 BED33_10350 PF10725 BED33_10350 BED33_10360 PF02794 BED33_10360 BED33_10370 PF08349 BED33_10370 BED33_10375 PF00875 DNA photolyase BED33_10375 PF03441 FAD binding domain of DNA photolyase BED33_10380 PF02112 BED33_10380 BED33_10385 PF01784 NIF3 (NGG1p interacting factor 3) BED33_10390 PF02682 Allophanate hydrolase subunit 1 BED33_10395 PF02626 Allophanate hydrolase subunit 2 BED33_10400 PF03746 LamB/YcsF family BED33_10405 PF06149 BED33_10405 BED33_10410 PF06166 BED33_10410 BED33_10415 PF01470 Pyroglutamyl peptidase BED33_10420 PF00285 Citrate synthase BED33_10425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED33_10435 PF00890 FAD binding domain BED33_10435 PF02910 Fumarate reductase flavoprotein C-term BED33_10440 PF13085 2Fe-2S iron-sulfur cluster binding domain BED33_10440 PF13534 4Fe-4S dicluster domain BED33_10445 PF00676 Dehydrogenase E1 component BED33_10445 PF02779 Transketolase, pyrimidine binding domain BED33_10445 PF16078 BED33_10445 BED33_10445 PF16870 BED33_10445 BED33_10450 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED33_10450 PF00364 Biotin-requiring enzyme BED33_10450 PF02817 e3 binding domain BED33_10455 PF00549 CoA-ligase BED33_10455 PF08442 ATP-grasp domain BED33_10460 PF00549 CoA-ligase BED33_10460 PF02629 CoA binding domain BED33_10465 PF00149 Calcineurin-like phosphoesterase BED33_10465 PF02872 5'-nucleotidase, C-terminal domain BED33_10470 PF01654 BED33_10470 BED33_10475 PF02322 BED33_10475 BED33_10480 PF08173 BED33_10480 BED33_10485 PF09600 BED33_10485 BED33_10490 PF03061 Thioesterase superfamily BED33_10495 PF01618 BED33_10495 BED33_10500 PF02472 Biopolymer transport protein ExbD/TolR BED33_10505 PF06519 TolA C-terminal BED33_10510 PF04052 TolB amino-terminal domain BED33_10510 PF07676 WD40-like Beta Propeller Repeat BED33_10515 PF00691 OmpA family BED33_10520 PF13174 Tetratricopeptide repeat BED33_10520 PF13432 Tetratricopeptide repeat BED33_10520 PF16331 BED33_10520 BED33_10545 PF02445 Quinolinate synthetase A protein BED33_10550 PF04973 BED33_10550 BED33_10555 PF01545 Cation efflux family BED33_10560 PF00793 DAHP synthetase I family BED33_10565 PF00300 Histidine phosphatase superfamily (branch 1) BED33_10570 PF01223 DNA/RNA non-specific endonuclease BED33_10580 PF00082 Subtilase family BED33_10585 PF07769 BED33_10585 BED33_10590 PF01263 Aldose 1-epimerase BED33_10595 PF00288 GHMP kinases N terminal domain BED33_10595 PF08544 GHMP kinases C terminal BED33_10595 PF10509 Galactokinase galactose-binding signature BED33_10600 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BED33_10600 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BED33_10605 PF16363 BED33_10605 BED33_10610 PF02517 CAAX protease self-immunity BED33_10615 PF00005 ABC transporter BED33_10620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_10620 PF03459 TOBE domain BED33_10625 PF10766 Protein of unknown function (DUF2592) BED33_10630 PF13531 Bacterial extracellular solute-binding protein BED33_10635 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10640 PF00005 ABC transporter BED33_10640 PF03459 TOBE domain BED33_10645 PF08282 haloacid dehalogenase-like hydrolase BED33_10650 PF10282 Lactonase, 7-bladed beta-propeller BED33_10655 PF00202 Aminotransferase class-III BED33_10660 PF04055 Radical SAM superfamily BED33_10660 PF06968 Biotin and Thiamin Synthesis associated domain BED33_10665 PF00155 Aminotransferase class I and II BED33_10670 PF08241 Methyltransferase domain BED33_10675 PF13500 AAA domain BED33_10680 PF00005 ABC transporter BED33_10685 PF00271 Helicase conserved C-terminal domain BED33_10685 PF02151 UvrB/uvrC motif BED33_10685 PF04851 Type III restriction enzyme, res subunit BED33_10685 PF12344 Ultra-violet resistance protein B BED33_10690 PF09905 Uncharacterized conserved protein (DUF2132) BED33_10695 PF01933 Uncharacterised protein family UPF0052 BED33_10700 PF04055 Radical SAM superfamily BED33_10700 PF06463 Molybdenum Cofactor Synthesis C BED33_10700 PF13353 4Fe-4S single cluster domain BED33_10705 PF01967 MoaC family BED33_10710 PF02597 ThiS family BED33_10715 PF02391 MoaE protein BED33_10720 PF01027 Inhibitor of apoptosis-promoting Bax1 BED33_10725 PF12698 ABC-2 family transporter protein BED33_10730 PF12698 ABC-2 family transporter protein BED33_10735 PF00005 ABC transporter BED33_10740 PF16576 BED33_10740 BED33_10745 PF00440 Bacterial regulatory proteins, tetR family BED33_10745 PF09209 Domain of unknown function (DUF1956) BED33_10750 PF00270 DEAD/DEAH box helicase BED33_10750 PF00271 Helicase conserved C-terminal domain BED33_10755 PF01207 Dihydrouridine synthase (Dus) BED33_10765 PF00571 CBS domain BED33_10765 PF01769 Divalent cation transporter BED33_10770 PF00768 D-alanyl-D-alanine carboxypeptidase BED33_10775 PF01565 FAD binding domain BED33_10775 PF09330 D-lactate dehydrogenase, membrane binding BED33_10780 PF01928 CYTH domain BED33_10785 PF01844 HNH endonuclease BED33_10790 PF05076 Suppressor of fused protein (SUFU) BED33_10795 PF04226 BED33_10795 BED33_10800 PF00005 ABC transporter BED33_10805 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein BED33_10810 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10815 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10820 PF07308 BED33_10820 BED33_10830 PF02653 BED33_10830 BED33_10830 PF13646 HEAT repeats BED33_10835 PF02653 BED33_10835 BED33_10840 PF00005 ABC transporter BED33_10840 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED33_10845 PF00005 ABC transporter BED33_10850 PF00581 Rhodanese-like domain BED33_10860 PF00487 BED33_10860 BED33_10865 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED33_10875 PF00005 ABC transporter BED33_10880 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10885 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein BED33_10890 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_10895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_10895 PF03466 LysR substrate binding domain BED33_10905 PF00892 EamA-like transporter family BED33_10910 PF05426 Alginate lyase BED33_10915 PF00267 Gram-negative porin BED33_10920 PF06733 DEAD_2 BED33_10920 PF13307 Helicase C-terminal domain BED33_10925 PF00230 Major intrinsic protein BED33_10930 PF02885 Glycosyl transferase family, helical bundle domain BED33_10940 PF07338 Protein of unknown function (DUF1471) BED33_10945 PF01613 Flavin reductase like domain BED33_10950 PF05971 Protein of unknown function (DUF890) BED33_10955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_10955 PF08447 PAS fold BED33_10960 PF00005 ABC transporter BED33_10965 PF00528 Binding-protein-dependent transport system inner membrane component BED33_10970 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_10975 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED33_10980 PF00210 Ferritin-like domain BED33_10985 PF13649 Methyltransferase domain BED33_10990 PF10099 BED33_10990 BED33_10995 PF04542 Sigma-70 region 2 BED33_10995 PF08281 Sigma-70, region 4 BED33_11000 PF02469 Fasciclin domain BED33_11005 PF00583 Acetyltransferase (GNAT) family BED33_11010 PF00892 EamA-like transporter family BED33_11020 PF13505 Outer membrane protein beta-barrel domain BED33_11025 PF12697 Alpha/beta hydrolase family BED33_11030 PF01545 Cation efflux family BED33_11040 PF00005 ABC transporter BED33_11040 PF12848 ABC transporter BED33_11045 PF01548 BED33_11045 BED33_11045 PF02371 BED33_11045 BED33_11050 PF00899 ThiF family BED33_11055 PF00994 Probable molybdopterin binding domain BED33_11055 PF03453 MoeA N-terminal region (domain I and II) BED33_11055 PF03454 MoeA C-terminal region (domain IV) BED33_11060 PF06041 Bacterial protein of unknown function (DUF924) BED33_11065 PF04055 Radical SAM superfamily BED33_11070 PF00005 ABC transporter BED33_11075 PF13437 HlyD family secretion protein BED33_11090 PF00756 Putative esterase BED33_11095 PF00107 Zinc-binding dehydrogenase BED33_11095 PF08240 Alcohol dehydrogenase GroES-like domain BED33_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_11100 PF03466 LysR substrate binding domain BED33_11105 PF06779 BED33_11105 BED33_11110 PF01227 GTP cyclohydrolase I BED33_11115 PF04235 BED33_11115 BED33_11120 PF00356 Bacterial regulatory proteins, lacI family BED33_11120 PF13377 Periplasmic binding protein-like domain BED33_11125 PF13407 Periplasmic binding protein domain BED33_11130 PF00005 ABC transporter BED33_11135 PF02653 BED33_11135 BED33_11140 PF00158 Sigma-54 interaction domain BED33_11140 PF01590 GAF domain BED33_11150 PF00037 4Fe-4S binding domain BED33_11150 PF12800 4Fe-4S binding domain BED33_11155 PF01750 Hydrogenase maturation protease BED33_11160 PF07450 BED33_11160 BED33_11165 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED33_11170 PF12838 4Fe-4S dicluster domain BED33_11175 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED33_11175 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED33_11175 PF00374 Nickel-dependent hydrogenase BED33_11180 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_11180 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED33_11185 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED33_11190 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_11190 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED33_11195 PF00146 NADH dehydrogenase BED33_11200 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_11205 PF00037 4Fe-4S binding domain BED33_11205 PF12798 4Fe-4S binding domain BED33_11210 PF01155 Hydrogenase expression/synthesis hypA family BED33_11215 PF01455 HupF/HypC family BED33_11220 PF02698 DUF218 domain BED33_11225 PF00390 Malic enzyme, N-terminal domain BED33_11225 PF03949 Malic enzyme, NAD binding domain BED33_11235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED33_11235 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BED33_11240 PF04172 BED33_11240 BED33_11245 PF03788 BED33_11245 BED33_11250 PF07690 Major Facilitator Superfamily BED33_11255 PF08309 BED33_11255 BED33_11260 PF13407 Periplasmic binding protein domain BED33_11270 PF01588 Putative tRNA binding domain BED33_11270 PF09334 tRNA synthetases class I (M) BED33_11275 PF10609 ParA/MinD ATPase like BED33_11280 PF00485 Phosphoribulokinase / Uridine kinase family BED33_11285 PF00692 dUTPase BED33_11290 PF05170 BED33_11290 BED33_11290 PF13502 BED33_11290 BED33_11295 PF03606 BED33_11295 BED33_11300 PF00571 CBS domain BED33_11300 PF03471 Transporter associated domain BED33_11300 PF03741 BED33_11300 BED33_11305 PF05598 BED33_11305 BED33_11305 PF13751 BED33_11305 BED33_11310 PF00483 Nucleotidyl transferase BED33_11315 PF00535 Glycosyl transferase family 2 BED33_11320 PF00535 Glycosyl transferase family 2 BED33_11325 PF01061 BED33_11325 BED33_11330 PF00005 ABC transporter BED33_11335 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BED33_11340 PF04321 RmlD substrate binding domain BED33_11345 PF13692 Glycosyl transferases group 1 BED33_11360 PF00872 BED33_11360 BED33_11385 PF00483 Nucleotidyl transferase BED33_11390 PF00483 Nucleotidyl transferase BED33_11395 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BED33_11395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BED33_11400 PF01502 Phosphoribosyl-AMP cyclohydrolase BED33_11400 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BED33_11405 PF00977 Histidine biosynthesis protein BED33_11410 PF00977 Histidine biosynthesis protein BED33_11415 PF00117 Glutamine amidotransferase class-I BED33_11420 PF00475 Imidazoleglycerol-phosphate dehydratase BED33_11420 PF08645 Polynucleotide kinase 3 phosphatase BED33_11425 PF00155 Aminotransferase class I and II BED33_11430 PF00815 Histidinol dehydrogenase BED33_11435 PF01634 ATP phosphoribosyltransferase BED33_11435 PF08029 HisG, C-terminal domain BED33_11445 PF02653 BED33_11445 BED33_11450 PF00005 ABC transporter BED33_11455 PF00465 Iron-containing alcohol dehydrogenase BED33_11465 PF13520 Amino acid permease BED33_11470 PF00929 Exonuclease BED33_11470 PF08411 Exonuclease C-terminal BED33_11475 PF07993 Male sterility protein BED33_11480 PF13515 BED33_11480 BED33_11485 PF04363 BED33_11485 BED33_11490 PF02653 BED33_11490 BED33_11495 PF02653 BED33_11495 BED33_11500 PF00005 ABC transporter BED33_11505 PF13407 Periplasmic binding protein domain BED33_11510 PF00288 GHMP kinases N terminal domain BED33_11515 PF00155 Aminotransferase class I and II BED33_11520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_11525 PF00871 Acetokinase family BED33_11530 PF10662 Ethanolamine utilisation - propanediol utilisation BED33_11535 PF00936 BMC domain BED33_11540 PF00936 BMC domain BED33_11545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED33_11545 PF10531 SLBB domain BED33_11545 PF13375 RnfC Barrel sandwich hybrid domain BED33_11545 PF13534 4Fe-4S dicluster domain BED33_11550 PF00465 Iron-containing alcohol dehydrogenase BED33_11555 PF00171 Aldehyde dehydrogenase family BED33_11560 PF01923 Cobalamin adenosyltransferase BED33_11560 PF03928 Domain of unknown function (DUF336) BED33_11565 PF03319 Ethanolamine utilisation protein EutN/carboxysome BED33_11570 PF15953 BED33_11570 BED33_11575 PF06130 BED33_11575 BED33_11580 PF00936 BMC domain BED33_11585 PF00936 BMC domain BED33_11590 PF02288 Dehydratase medium subunit BED33_11595 PF08841 Diol dehydratase reactivase ATPase-like domain BED33_11600 PF02287 Dehydratase small subunit BED33_11605 PF02288 Dehydratase medium subunit BED33_11610 PF02286 Dehydratase large subunit BED33_11615 PF00936 BMC domain BED33_11620 PF00936 BMC domain BED33_11625 PF00230 Major intrinsic protein BED33_11630 PF10114 BED33_11630 BED33_11630 PF12833 Helix-turn-helix domain BED33_11635 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED33_11635 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED33_11645 PF02570 Precorrin-8X methylmutase BED33_11650 PF01888 CbiD BED33_11655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_11660 PF13847 Methyltransferase domain BED33_11665 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_11670 PF01890 Cobalamin synthesis G C-terminus BED33_11670 PF11760 Cobalamin synthesis G N-terminal BED33_11670 PF11761 BED33_11670 BED33_11675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_11680 PF02571 BED33_11680 BED33_11685 PF06180 Cobalt chelatase (CbiK) BED33_11690 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED33_11695 PF01891 Cobalt uptake substrate-specific transmembrane region BED33_11700 PF02553 BED33_11700 BED33_11705 PF02361 Cobalt transport protein BED33_11710 PF00005 ABC transporter BED33_11715 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED33_11715 PF13500 AAA domain BED33_11725 PF02654 BED33_11725 BED33_11730 PF00300 Histidine phosphatase superfamily (branch 1) BED33_11735 PF02277 Phosphoribosyltransferase BED33_11750 PF00196 Bacterial regulatory proteins, luxR family BED33_11755 PF08786 Domain of unknown function (DUF1795) BED33_11760 PF00691 OmpA family BED33_11775 PF06744 BED33_11775 BED33_11775 PF06761 BED33_11775 BED33_11775 PF14331 BED33_11775 BED33_11780 PF05954 Phage late control gene D protein (GPD) BED33_11785 PF05488 PAAR motif BED33_11795 PF07024 ImpE protein BED33_11800 PF04965 Gene 25-like lysozyme BED33_11805 PF00764 Arginosuccinate synthase BED33_11810 PF01554 MatE BED33_11825 PF08282 haloacid dehalogenase-like hydrolase BED33_11830 PF00455 BED33_11830 BED33_11830 PF08220 DeoR-like helix-turn-helix domain BED33_11835 PF00144 Beta-lactamase BED33_11840 PF00072 Response regulator receiver domain BED33_11840 PF01584 CheW-like domain BED33_11845 PF00440 Bacterial regulatory proteins, tetR family BED33_11850 PF00155 Aminotransferase class I and II BED33_11850 PF00392 Bacterial regulatory proteins, gntR family BED33_11855 PF00583 Acetyltransferase (GNAT) family BED33_11860 PF02558 Ketopantoate reductase PanE/ApbA BED33_11860 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED33_11870 PF00005 ABC transporter BED33_11870 PF08402 TOBE domain BED33_11875 PF00528 Binding-protein-dependent transport system inner membrane component BED33_11880 PF13343 Bacterial extracellular solute-binding protein BED33_11885 PF07690 Major Facilitator Superfamily BED33_11890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_11890 PF05231 BED33_11890 BED33_11890 PF07730 Histidine kinase BED33_11895 PF00072 Response regulator receiver domain BED33_11895 PF00196 Bacterial regulatory proteins, luxR family BED33_11900 PF00072 Response regulator receiver domain BED33_11900 PF12431 BED33_11900 BED33_11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_11920 PF08218 Citrate lyase ligase C-terminal domain BED33_11925 PF06857 BED33_11925 BED33_11930 PF03328 HpcH/HpaI aldolase/citrate lyase family BED33_11935 PF04223 Citrate lyase, alpha subunit (CitF) BED33_11940 PF03802 BED33_11940 BED33_11945 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED33_11950 PF00939 Sodium:sulfate symporter transmembrane region BED33_11960 PF04290 BED33_11960 BED33_11965 PF03480 Bacterial extracellular solute-binding protein, family 7 BED33_11975 PF01648 4'-phosphopantetheinyl transferase superfamily BED33_11980 PF05118 Aspartyl/Asparaginyl beta-hydroxylase BED33_11985 PF00083 Sugar (and other) transporter BED33_11990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_11995 PF09831 BED33_11995 BED33_12000 PF00849 RNA pseudouridylate synthase BED33_12020 PF00419 Fimbrial protein BED33_12025 PF00577 Outer membrane usher protein BED33_12025 PF13953 PapC C-terminal domain BED33_12025 PF13954 PapC N-terminal domain BED33_12030 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_12030 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_12035 PF00419 Fimbrial protein BED33_12045 PF00072 Response regulator receiver domain BED33_12045 PF00196 Bacterial regulatory proteins, luxR family BED33_12055 PF06167 Glucose-regulated metallo-peptidase M90 BED33_12065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_12065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_12070 PF06551 BED33_12070 BED33_12075 PF06551 BED33_12075 BED33_12090 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_12095 PF01548 BED33_12095 BED33_12095 PF02371 BED33_12095 BED33_12100 PF00483 Nucleotidyl transferase BED33_12110 PF14001 BED33_12110 BED33_12120 PF01037 AsnC family BED33_12120 PF13412 Winged helix-turn-helix DNA-binding BED33_12125 PF10777 BED33_12125 BED33_12130 PF00107 Zinc-binding dehydrogenase BED33_12130 PF08240 Alcohol dehydrogenase GroES-like domain BED33_12135 PF00872 BED33_12135 BED33_12140 PF00703 Glycosyl hydrolases family 2 BED33_12140 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BED33_12140 PF02837 Glycosyl hydrolases family 2, sugar binding domain BED33_12140 PF02929 Beta galactosidase small chain BED33_12140 PF16353 BED33_12140 BED33_12145 PF00356 Bacterial regulatory proteins, lacI family BED33_12145 PF13377 Periplasmic binding protein-like domain BED33_12150 PF00313 'Cold-shock' DNA-binding domain BED33_12155 PF10781 BED33_12155 BED33_12160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_12160 PF00672 HAMP domain BED33_12160 PF02203 Tar ligand binding domain homologue BED33_12175 PF02308 BED33_12175 BED33_12180 PF00122 E1-E2 ATPase BED33_12180 PF00689 Cation transporting ATPase, C-terminus BED33_12180 PF00690 Cation transporter/ATPase, N-terminus BED33_12180 PF00702 haloacid dehalogenase-like hydrolase BED33_12185 PF00107 Zinc-binding dehydrogenase BED33_12185 PF16884 BED33_12185 BED33_12190 PF00582 Universal stress protein family BED33_12195 PF05247 Flagellar transcriptional activator (FlhD) BED33_12200 PF05280 Flagellar transcriptional activator (FlhC) BED33_12205 PF01618 BED33_12205 BED33_12210 PF00691 OmpA family BED33_12210 PF13677 BED33_12210 BED33_12215 PF01584 CheW-like domain BED33_12215 PF01627 Hpt domain BED33_12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_12215 PF02895 Signal transducing histidine kinase, homodimeric domain BED33_12215 PF09078 CheY binding BED33_12220 PF01584 CheW-like domain BED33_12225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_12225 PF00672 HAMP domain BED33_12225 PF02203 Tar ligand binding domain homologue BED33_12230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_12230 PF00672 HAMP domain BED33_12230 PF02203 Tar ligand binding domain homologue BED33_12235 PF01739 CheR methyltransferase, SAM binding domain BED33_12235 PF03705 CheR methyltransferase, all-alpha domain BED33_12240 PF00072 Response regulator receiver domain BED33_12240 PF01339 CheB methylesterase BED33_12245 PF00072 Response regulator receiver domain BED33_12250 PF04344 Chemotaxis phosphatase, CheZ BED33_12255 PF00082 Subtilase family BED33_12260 PF01312 FlhB HrpN YscU SpaS Family BED33_12265 PF00771 FHIPEP family BED33_12270 PF06366 BED33_12270 BED33_12280 PF05130 FlgN protein BED33_12285 PF04316 Anti-sigma-28 factor, FlgM BED33_12290 PF13144 SAF-like BED33_12295 PF00460 Flagella basal body rod protein BED33_12300 PF00460 Flagella basal body rod protein BED33_12300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_12305 PF03963 BED33_12305 BED33_12305 PF13860 FlgD Ig-like domain BED33_12305 PF13861 FlgD Tudor-like domain BED33_12310 PF00460 Flagella basal body rod protein BED33_12310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_12310 PF07559 Flagellar basal body protein FlaE BED33_12315 PF00460 Flagella basal body rod protein BED33_12315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_12320 PF00460 Flagella basal body rod protein BED33_12320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_12325 PF02107 BED33_12325 BED33_12330 PF02119 BED33_12330 BED33_12335 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BED33_12335 PF10135 BED33_12335 BED33_12340 PF00460 Flagella basal body rod protein BED33_12340 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED33_12345 PF00669 Bacterial flagellin N-terminal helical region BED33_12350 PF01311 BED33_12350 BED33_12355 PF01313 BED33_12355 BED33_12360 PF00813 BED33_12360 BED33_12365 PF04347 BED33_12365 BED33_12370 PF01052 Surface presentation of antigens (SPOA) BED33_12370 PF16973 BED33_12370 BED33_12375 PF01052 Surface presentation of antigens (SPOA) BED33_12375 PF02154 Flagellar motor switch protein FliM BED33_12380 PF03748 BED33_12380 BED33_12385 PF02120 Flagellar hook-length control protein FliK BED33_12390 PF02050 Flagellar FliJ protein BED33_12395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_12400 PF02108 BED33_12400 BED33_12405 PF01706 FliG C-terminal domain BED33_12405 PF14841 FliG middle domain BED33_12405 PF14842 FliG N-terminal domain BED33_12410 PF01514 Secretory protein of YscJ/FliF family BED33_12410 PF08345 BED33_12410 BED33_12415 PF02049 BED33_12415 BED33_12440 PF00730 HhH-GPD superfamily base excision DNA repair protein BED33_12445 PF13487 HD domain BED33_12450 PF12833 Helix-turn-helix domain BED33_12455 PF05400 Flagellar protein FliT BED33_12460 PF02561 Flagellar protein FliS BED33_12465 PF02465 BED33_12465 BED33_12465 PF07195 BED33_12465 BED33_12465 PF07196 Flagellin hook IN motif BED33_12470 PF00669 Bacterial flagellin N-terminal helical region BED33_12470 PF00700 Bacterial flagellin C-terminal helical region BED33_12475 PF00669 Bacterial flagellin N-terminal helical region BED33_12475 PF00700 Bacterial flagellin C-terminal helical region BED33_12485 PF04539 Sigma-70 region 3 BED33_12485 PF04542 Sigma-70 region 2 BED33_12485 PF04545 Sigma-70, region 4 BED33_12490 PF02899 Phage integrase, N-terminal SAM-like domain BED33_12495 PF00291 Pyridoxal-phosphate dependent enzyme BED33_12500 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_12505 PF00528 Binding-protein-dependent transport system inner membrane component BED33_12510 PF00005 ABC transporter BED33_12525 PF00171 Aldehyde dehydrogenase family BED33_12525 PF01619 Proline dehydrogenase BED33_12525 PF14850 DNA-binding domain of Proline dehydrogenase BED33_12530 PF00474 Sodium:solute symporter family BED33_12550 PF03239 BED33_12550 BED33_12555 PF09375 Imelysin BED33_12555 PF13473 Cupredoxin-like domain BED33_12560 PF04261 Dyp-type peroxidase family BED33_12565 PF03358 NADPH-dependent FMN reductase BED33_12570 PF01381 Helix-turn-helix BED33_12570 PF13239 BED33_12570 BED33_12575 PF01344 Kelch motif BED33_12590 PF01613 Flavin reductase like domain BED33_12595 PF00881 Nitroreductase family BED33_12600 PF00561 alpha/beta hydrolase fold BED33_12605 PF01042 Endoribonuclease L-PSP BED33_12610 PF00857 Isochorismatase family BED33_12620 PF00440 Bacterial regulatory proteins, tetR family BED33_12620 PF08362 YcdC-like protein, C-terminal region BED33_12625 PF00324 Amino acid permease BED33_12635 PF00589 Phage integrase family BED33_12640 PF01527 Transposase BED33_12645 PF13683 BED33_12645 BED33_12665 PF00128 Alpha amylase, catalytic domain BED33_12675 PF06942 BED33_12675 BED33_12680 PF10769 BED33_12680 BED33_12690 PF01541 GIY-YIG catalytic domain BED33_12690 PF02151 UvrB/uvrC motif BED33_12690 PF08459 UvrC Helix-hairpin-helix N-terminal BED33_12695 PF01066 CDP-alcohol phosphatidyltransferase BED33_12715 PF04606 BED33_12715 BED33_12725 PF05954 Phage late control gene D protein (GPD) BED33_12745 PF05069 BED33_12745 BED33_12750 PF06891 BED33_12750 BED33_12760 PF13539 D-alanyl-D-alanine carboxypeptidase BED33_12780 PF05598 BED33_12780 BED33_12780 PF13751 BED33_12780 BED33_12785 PF07690 Major Facilitator Superfamily BED33_12790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_12790 PF03466 LysR substrate binding domain BED33_12795 PF01381 Helix-turn-helix BED33_12800 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_12810 PF06530 BED33_12810 BED33_12815 PF10753 BED33_12815 BED33_12820 PF16080 BED33_12820 BED33_12825 PF00959 Phage lysozyme BED33_12830 PF00561 alpha/beta hydrolase fold BED33_12835 PF04391 BED33_12835 BED33_12840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_12840 PF03466 LysR substrate binding domain BED33_12845 PF00144 Beta-lactamase BED33_12850 PF01926 50S ribosome-binding GTPase BED33_12850 PF06071 Protein of unknown function (DUF933) BED33_12860 PF01195 Peptidyl-tRNA hydrolase BED33_12865 PF10762 BED33_12865 BED33_12875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BED33_12875 PF14572 Phosphoribosyl synthetase-associated domain BED33_12880 PF00288 GHMP kinases N terminal domain BED33_12880 PF08544 GHMP kinases C terminal BED33_12885 PF03550 Outer membrane lipoprotein LolB BED33_12890 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BED33_12890 PF01488 Shikimate / quinate 5-dehydrogenase BED33_12890 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BED33_12895 PF00472 RF-1 domain BED33_12895 PF03462 PCRF domain BED33_12900 PF13847 Methyltransferase domain BED33_12905 PF04247 BED33_12905 BED33_12910 PF13369 BED33_12910 BED33_12910 PF13371 Tetratricopeptide repeat BED33_12915 PF00793 DAHP synthetase I family BED33_12920 PF00916 BED33_12920 BED33_12920 PF01740 STAS domain BED33_12925 PF00990 GGDEF domain BED33_12945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_12950 PF02811 PHP domain BED33_12955 PF02613 Nitrate reductase delta subunit BED33_12960 PF07273 Protein of unknown function (DUF1439) BED33_12965 PF07690 Major Facilitator Superfamily BED33_12975 PF13988 BED33_12975 BED33_12980 PF13302 Acetyltransferase (GNAT) domain BED33_12985 PF04337 Protein of unknown function, DUF480 BED33_12990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED33_12995 PF03023 BED33_12995 BED33_13000 PF01699 Sodium/calcium exchanger protein BED33_13005 PF04954 Siderophore-interacting protein BED33_13005 PF08021 Siderophore-interacting FAD-binding domain BED33_13010 PF07690 Major Facilitator Superfamily BED33_13015 PF01548 BED33_13015 BED33_13015 PF02371 BED33_13015 BED33_13025 PF00672 HAMP domain BED33_13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_13025 PF07730 Histidine kinase BED33_13025 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BED33_13030 PF02322 BED33_13030 BED33_13035 PF01654 BED33_13035 BED33_13040 PF00155 Aminotransferase class I and II BED33_13040 PF00392 Bacterial regulatory proteins, gntR family BED33_13045 PF00202 Aminotransferase class-III BED33_13050 PF04958 Arginine N-succinyltransferase beta subunit BED33_13055 PF00171 Aldehyde dehydrogenase family BED33_13060 PF04996 Succinylarginine dihydrolase BED33_13065 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BED33_13070 PF01548 BED33_13070 BED33_13070 PF02371 BED33_13070 BED33_13075 PF00267 Gram-negative porin BED33_13080 PF00665 Integrase core domain BED33_13085 PF13518 Helix-turn-helix domain BED33_13090 PF05013 N-formylglutamate amidohydrolase BED33_13095 PF01979 Amidohydrolase family BED33_13100 PF00392 Bacterial regulatory proteins, gntR family BED33_13100 PF07702 UTRA domain BED33_13105 PF01979 Amidohydrolase family BED33_13125 PF03797 Autotransporter beta-domain BED33_13130 PF02502 Ribose/Galactose Isomerase BED33_13130 PF12408 Ribose-5-phosphate isomerase BED33_13135 PF01476 LysM domain BED33_13135 PF01551 Peptidase family M23 BED33_13140 PF01116 Fructose-bisphosphate aldolase class-II BED33_13145 PF01380 SIS domain BED33_13150 PF03610 PTS system fructose IIA component BED33_13155 PF03613 BED33_13155 BED33_13165 PF03830 PTS system sorbose subfamily IIB component BED33_13170 PF08013 Tagatose 6 phosphate kinase BED33_13175 PF00455 BED33_13175 BED33_13175 PF08220 DeoR-like helix-turn-helix domain BED33_13185 PF01548 BED33_13185 BED33_13185 PF02371 BED33_13185 BED33_13190 PF06551 BED33_13190 BED33_13195 PF00849 RNA pseudouridylate synthase BED33_13195 PF01479 S4 domain BED33_13200 PF03616 BED33_13200 BED33_13210 PF01548 BED33_13210 BED33_13215 PF02371 BED33_13215 BED33_13220 PF08003 Protein of unknown function (DUF1698) BED33_13225 PF13649 Methyltransferase domain BED33_13230 PF01124 MAPEG family BED33_13235 PF01904 Protein of unknown function DUF72 BED33_13240 PF00857 Isochorismatase family BED33_13245 PF00152 tRNA synthetases class II (D, K and N) BED33_13245 PF01336 OB-fold nucleic acid binding domain BED33_13245 PF02938 GAD domain BED33_13250 PF00293 NUDIX domain BED33_13255 PF01709 Transcriptional regulator BED33_13260 PF02075 Crossover junction endodeoxyribonuclease RuvC BED33_13265 PF01330 RuvA N terminal domain BED33_13265 PF07499 RuvA, C-terminal domain BED33_13265 PF14520 Helix-hairpin-helix domain BED33_13270 PF05491 Holliday junction DNA helicase ruvB C-terminus BED33_13270 PF05496 Holliday junction DNA helicase ruvB N-terminus BED33_13275 PF00854 POT family BED33_13280 PF00950 BED33_13280 BED33_13285 PF00005 ABC transporter BED33_13290 PF01297 Periplasmic solute binding protein family BED33_13295 PF01551 Peptidase family M23 BED33_13295 PF04225 Opacity-associated protein A LysM-like domain BED33_13295 PF08525 BED33_13295 BED33_13300 PF03279 BED33_13300 BED33_13315 PF00224 Pyruvate kinase, barrel domain BED33_13315 PF02887 Pyruvate kinase, alpha/beta domain BED33_13320 PF01380 SIS domain BED33_13320 PF01418 Helix-turn-helix domain, rpiR family BED33_13325 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BED33_13325 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BED33_13330 PF01081 KDPG and KHG aldolase BED33_13335 PF00893 Small Multidrug Resistance protein BED33_13340 PF00893 Small Multidrug Resistance protein BED33_13345 PF01042 Endoribonuclease L-PSP BED33_13350 PF06733 DEAD_2 BED33_13350 PF13307 Helicase C-terminal domain BED33_13355 PF00814 Glycoprotease family BED33_13365 PF00501 AMP-binding enzyme BED33_13365 PF13193 AMP-binding enzyme C-terminal domain BED33_13370 PF00570 HRDC domain BED33_13370 PF01612 3'-5' exonuclease BED33_13375 PF03776 Septum formation topological specificity factor MinE BED33_13380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED33_13385 PF03775 Septum formation inhibitor MinC, C-terminal domain BED33_13385 PF05209 Septum formation inhibitor MinC, N-terminal domain BED33_13395 PF05166 YcgL domain BED33_13400 PF13406 Transglycosylase SLT domain BED33_13405 PF01557 Fumarylacetoacetate (FAA) hydrolase family BED33_13410 PF03692 BED33_13410 BED33_13425 PF00892 EamA-like transporter family BED33_13435 PF00924 Mechanosensitive ion channel BED33_13440 PF13417 Glutathione S-transferase, N-terminal domain BED33_13440 PF14834 Glutathione S-transferase, C-terminal domain BED33_13445 PF13302 Acetyltransferase (GNAT) domain BED33_13455 PF04266 ASCH domain BED33_13460 PF07351 BED33_13460 BED33_13470 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_13475 PF05229 BED33_13475 BED33_13480 PF05229 BED33_13480 BED33_13485 PF05229 BED33_13485 BED33_13490 PF07690 Major Facilitator Superfamily BED33_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_13495 PF03466 LysR substrate binding domain BED33_13500 PF02470 BED33_13500 BED33_13505 PF04403 BED33_13505 BED33_13510 PF13185 GAF domain BED33_13515 PF04352 ProQ/FINO family BED33_13515 PF17516 BED33_13515 BED33_13520 PF00595 PDZ domain (Also known as DHR or GLGF) BED33_13520 PF03572 Peptidase family S41 BED33_13520 PF11818 BED33_13520 BED33_13525 PF01435 Peptidase family M48 BED33_13540 PF14583 Oligogalacturonate lyase BED33_13545 PF01614 Bacterial transcriptional regulator BED33_13545 PF09339 IclR helix-turn-helix domain BED33_13550 PF01471 Putative peptidoglycan binding domain BED33_13550 PF01510 N-acetylmuramoyl-L-alanine amidase BED33_13560 PF04307 BED33_13560 BED33_13570 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED33_13575 PF13416 Bacterial extracellular solute-binding protein BED33_13580 PF00005 ABC transporter BED33_13580 PF08402 TOBE domain BED33_13585 PF00528 Binding-protein-dependent transport system inner membrane component BED33_13590 PF00528 Binding-protein-dependent transport system inner membrane component BED33_13595 PF06917 Periplasmic pectate lyase BED33_13600 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_13605 PF04962 KduI/IolB family BED33_13610 PF07883 Cupin domain BED33_13615 PF00872 BED33_13615 BED33_13620 PF13419 Haloacid dehalogenase-like hydrolase BED33_13625 PF14002 BED33_13625 BED33_13630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_13630 PF03466 LysR substrate binding domain BED33_13635 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BED33_13635 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BED33_13640 PF00378 Enoyl-CoA hydratase/isomerase family BED33_13645 PF03308 ArgK protein BED33_13655 PF03881 Fructosamine kinase BED33_13660 PF00950 BED33_13660 BED33_13665 PF00950 BED33_13665 BED33_13670 PF00005 ABC transporter BED33_13675 PF01297 Periplasmic solute binding protein family BED33_13680 PF01464 Transglycosylase SLT domain BED33_13685 PF01914 BED33_13685 BED33_13710 PF04474 BED33_13710 BED33_13715 PF13619 BED33_13715 BED33_13720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED33_13720 PF02824 TGS domain BED33_13720 PF03129 Anticodon binding domain BED33_13720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED33_13725 PF00707 Translation initiation factor IF-3, C-terminal domain BED33_13730 PF01632 Ribosomal protein L35 BED33_13735 PF00453 Ribosomal protein L20 BED33_13740 PF01409 tRNA synthetases class II core domain (F) BED33_13740 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BED33_13745 PF01588 Putative tRNA binding domain BED33_13745 PF03147 Ferredoxin-fold anticodon binding domain BED33_13745 PF03483 B3/4 domain BED33_13745 PF03484 tRNA synthetase B5 domain BED33_13750 PF00216 Bacterial DNA-binding protein BED33_13755 PF13358 DDE superfamily endonuclease BED33_13755 PF13384 Homeodomain-like domain BED33_13760 PF10697 BED33_13760 BED33_13765 PF01032 FecCD transport family BED33_13770 PF00255 Glutathione peroxidase BED33_13775 PF00005 ABC transporter BED33_13780 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED33_13785 PF00535 Glycosyl transferase family 2 BED33_13790 PF00551 Formyl transferase BED33_13790 PF01370 NAD dependent epimerase/dehydratase family BED33_13790 PF02911 Formyl transferase, C-terminal domain BED33_13795 PF01522 Polysaccharide deacetylase BED33_13800 PF02366 BED33_13800 BED33_13805 PF00892 EamA-like transporter family BED33_13815 PF00877 NlpC/P60 family BED33_13825 PF02696 BED33_13825 BED33_13840 PF00593 TonB dependent receptor BED33_13840 PF07715 TonB-dependent Receptor Plug Domain BED33_13845 PF10636 Hemin uptake protein hemP BED33_13850 PF00793 DAHP synthetase I family BED33_13855 PF03618 BED33_13855 BED33_13860 PF00391 PEP-utilising enzyme, mobile domain BED33_13860 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BED33_13860 PF02896 PEP-utilising enzyme, TIM barrel domain BED33_13870 PF01594 BED33_13870 BED33_13875 PF01565 FAD binding domain BED33_13875 PF02913 FAD linked oxidases, C-terminal domain BED33_13875 PF13183 4Fe-4S dicluster domain BED33_13880 PF03061 Thioesterase superfamily BED33_13885 PF01521 Iron-sulphur cluster biosynthesis BED33_13890 PF01458 Uncharacterized protein family (UPF0051) BED33_13895 PF00005 ABC transporter BED33_13900 PF01458 Uncharacterized protein family (UPF0051) BED33_13905 PF00266 Aminotransferase class-V BED33_13910 PF02657 Fe-S metabolism associated domain BED33_13915 PF03734 L,D-transpeptidase catalytic domain BED33_13920 PF04728 Lipoprotein leucine-zipper BED33_13925 PF00224 Pyruvate kinase, barrel domain BED33_13925 PF02887 Pyruvate kinase, alpha/beta domain BED33_13945 PF00677 Lumazine binding domain BED33_13950 PF02353 Mycolic acid cyclopropane synthetase BED33_13955 PF07690 Major Facilitator Superfamily BED33_13960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_13960 PF03466 LysR substrate binding domain BED33_13965 PF00356 Bacterial regulatory proteins, lacI family BED33_13965 PF13377 Periplasmic binding protein-like domain BED33_13970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED33_13970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED33_13975 PF00877 NlpC/P60 family BED33_13980 PF00462 Glutaredoxin BED33_13985 PF00929 Exonuclease BED33_13990 PF05598 BED33_13990 BED33_13990 PF13751 BED33_13990 BED33_13995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED33_14005 PF00440 Bacterial regulatory proteins, tetR family BED33_14005 PF16925 BED33_14005 BED33_14010 PF00884 Sulfatase BED33_14010 PF08019 BED33_14010 BED33_14015 PF06945 BED33_14015 BED33_14020 PF00248 Aldo/keto reductase family BED33_14025 PF04632 BED33_14025 BED33_14035 PF07869 BED33_14035 BED33_14040 PF01047 MarR family BED33_14045 PF05433 BED33_14045 BED33_14050 PF03702 Uncharacterised protein family (UPF0075) BED33_14055 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BED33_14060 PF01243 Pyridoxamine 5'-phosphate oxidase BED33_14060 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BED33_14065 PF00579 tRNA synthetases class I (W and Y) BED33_14065 PF01479 S4 domain BED33_14075 PF00043 Glutathione S-transferase, C-terminal domain BED33_14075 PF02798 Glutathione S-transferase, N-terminal domain BED33_14080 PF11656 BED33_14080 BED33_14085 PF06930 BED33_14085 BED33_14090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED33_14095 PF01548 BED33_14095 BED33_14095 PF02371 BED33_14095 BED33_14100 PF00854 POT family BED33_14105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_14105 PF03466 LysR substrate binding domain BED33_14120 PF00005 ABC transporter BED33_14125 PF00005 ABC transporter BED33_14125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_14130 PF00528 Binding-protein-dependent transport system inner membrane component BED33_14130 PF12911 BED33_14130 BED33_14135 PF00528 Binding-protein-dependent transport system inner membrane component BED33_14140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_14155 PF00158 Sigma-54 interaction domain BED33_14155 PF02954 Bacterial regulatory protein, Fis family BED33_14160 PF04012 BED33_14160 BED33_14165 PF06667 BED33_14165 BED33_14170 PF04024 BED33_14170 BED33_14175 PF09584 BED33_14175 BED33_14180 PF04317 BED33_14180 BED33_14185 PF05128 BED33_14185 BED33_14190 PF08808 BED33_14190 BED33_14195 PF09722 BED33_14195 BED33_14200 PF00158 Sigma-54 interaction domain BED33_14200 PF00989 PAS fold BED33_14205 PF08534 Redoxin BED33_14210 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BED33_14210 PF13378 Enolase C-terminal domain-like BED33_14215 PF00246 Zinc carboxypeptidase BED33_14220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_14225 PF01544 CorA-like Mg2+ transporter protein BED33_14230 PF01171 PP-loop family BED33_14235 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BED33_14245 PF00893 Small Multidrug Resistance protein BED33_14250 PF02308 BED33_14250 BED33_14255 PF03891 BED33_14255 BED33_14260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED33_14260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_14265 PF11739 BED33_14265 BED33_14270 PF13617 BED33_14270 BED33_14275 PF07027 BED33_14275 BED33_14280 PF02525 Flavodoxin-like fold BED33_14285 PF00270 DEAD/DEAH box helicase BED33_14285 PF00271 Helicase conserved C-terminal domain BED33_14285 PF04408 Helicase associated domain (HA2) BED33_14285 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BED33_14285 PF11898 BED33_14285 BED33_14290 PF05973 BED33_14290 BED33_14295 PF01381 Helix-turn-helix BED33_14300 PF00089 Trypsin BED33_14310 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BED33_14315 PF00672 HAMP domain BED33_14315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_14320 PF00072 Response regulator receiver domain BED33_14320 PF00486 Transcriptional regulatory protein, C terminal BED33_14330 PF13520 Amino acid permease BED33_14335 PF07338 Protein of unknown function (DUF1471) BED33_14345 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BED33_14345 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BED33_14345 PF12769 Domain of unknown function (DUF3814) BED33_14350 PF02233 NAD(P) transhydrogenase beta subunit BED33_14355 PF00582 Universal stress protein family BED33_14360 PF00027 Cyclic nucleotide-binding domain BED33_14360 PF13545 Crp-like helix-turn-helix domain BED33_14365 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED33_14365 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED33_14370 PF05013 N-formylglutamate amidohydrolase BED33_14375 PF04463 BED33_14375 BED33_14380 PF06445 GyrI-like small molecule binding domain BED33_14385 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_14405 PF13208 BED33_14405 BED33_14405 PF15615 BED33_14405 BED33_14410 PF13419 Haloacid dehalogenase-like hydrolase BED33_14415 PF13710 ACT domain BED33_14420 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_14420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_14420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_14425 PF07313 Protein of unknown function (DUF1460) BED33_14430 PF01510 N-acetylmuramoyl-L-alanine amidase BED33_14440 PF07520 BED33_14440 BED33_14460 PF13449 Esterase-like activity of phytase BED33_14470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_14475 PF07690 Major Facilitator Superfamily BED33_14480 PF13396 BED33_14480 BED33_14485 PF13354 Beta-lactamase enzyme family BED33_14490 PF05472 DNA replication terminus site-binding protein (Ter protein) BED33_14495 PF00196 Bacterial regulatory proteins, luxR family BED33_14495 PF08448 PAS fold BED33_14500 PF00206 Lyase BED33_14500 PF10415 Fumarase C C-terminus BED33_14505 PF01238 Phosphomannose isomerase type I BED33_14510 PF06097 BED33_14510 BED33_14520 PF00356 Bacterial regulatory proteins, lacI family BED33_14520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_14525 PF00367 phosphotransferase system, EIIB BED33_14525 PF02378 Phosphotransferase system, EIIC BED33_14530 PF00155 Aminotransferase class I and II BED33_14535 PF00962 Adenosine/AMP deaminase BED33_14540 PF13593 SBF-like CPA transporter family (DUF4137) BED33_14545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED33_14545 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED33_14550 PF02311 AraC-like ligand binding domain BED33_14550 PF12833 Helix-turn-helix domain BED33_14560 PF00005 ABC transporter BED33_14565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_14570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_14570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_14575 PF02610 L-arabinose isomerase BED33_14575 PF11762 L-arabinose isomerase C-terminal domain BED33_14585 PF13175 AAA ATPase domain BED33_14585 PF13304 AAA domain BED33_14595 PF13437 HlyD family secretion protein BED33_14595 PF13533 Biotin-lipoyl like BED33_14610 PF10754 BED33_14610 BED33_14615 PF02508 BED33_14615 BED33_14620 PF04060 Putative Fe-S cluster BED33_14620 PF14697 4Fe-4S dicluster domain BED33_14625 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED33_14625 PF10531 SLBB domain BED33_14625 PF13237 4Fe-4S dicluster domain BED33_14625 PF13375 RnfC Barrel sandwich hybrid domain BED33_14635 PF06445 GyrI-like small molecule binding domain BED33_14635 PF12833 Helix-turn-helix domain BED33_14640 PF03116 BED33_14640 BED33_14645 PF04205 FMN-binding domain BED33_14650 PF02508 BED33_14650 BED33_14655 PF00633 Helix-hairpin-helix motif BED33_14655 PF00730 HhH-GPD superfamily base excision DNA repair protein BED33_14655 PF10576 Iron-sulfur binding domain of endonuclease III BED33_14730 PF00293 NUDIX domain BED33_14730 PF09979 BED33_14730 BED33_14740 PF06381 BED33_14740 BED33_14745 PF03237 Terminase-like family BED33_14755 PF03245 BED33_14755 BED33_14760 PF00959 Phage lysozyme BED33_14785 PF05766 BED33_14785 BED33_14795 PF05772 NinB protein BED33_14805 PF04448 BED33_14805 BED33_14820 PF01695 IstB-like ATP binding protein BED33_14825 PF04492 BED33_14825 BED33_14835 PF05269 Bacteriophage CII protein BED33_14840 PF13560 Helix-turn-helix domain BED33_14845 PF00717 Peptidase S24-like BED33_14845 PF01381 Helix-turn-helix BED33_14855 PF08861 BED33_14855 BED33_14860 PF10965 BED33_14860 BED33_14905 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED33_14910 PF03837 BED33_14910 BED33_14925 PF00575 S1 RNA binding domain BED33_14925 PF00773 RNB domain BED33_14925 PF08206 Ribonuclease B OB domain BED33_14930 PF02554 BED33_14930 BED33_14930 PF13722 BED33_14930 BED33_14935 PF04328 BED33_14935 BED33_14940 PF00923 Transaldolase BED33_14945 PF00455 BED33_14945 BED33_14945 PF08220 DeoR-like helix-turn-helix domain BED33_14950 PF09932 BED33_14950 BED33_14955 PF00596 Class II Aldolase and Adducin N-terminal domain BED33_14960 PF05433 BED33_14960 BED33_14965 PF01253 Translation initiation factor SUI1 BED33_14970 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BED33_14975 PF07338 Protein of unknown function (DUF1471) BED33_14980 PF03594 BED33_14980 BED33_14985 PF01381 Helix-turn-helix BED33_14985 PF07883 Cupin domain BED33_14995 PF13176 Tetratricopeptide repeat BED33_14995 PF13432 Tetratricopeptide repeat BED33_15000 PF06305 BED33_15000 BED33_15005 PF01569 PAP2 superfamily BED33_15010 PF00925 GTP cyclohydrolase II BED33_15015 PF00330 Aconitase family (aconitate hydratase) BED33_15015 PF00694 Aconitase C-terminal domain BED33_15025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_15025 PF03466 LysR substrate binding domain BED33_15030 PF01131 DNA topoisomerase BED33_15030 PF01396 BED33_15030 BED33_15030 PF01751 Toprim domain BED33_15030 PF08272 Topoisomerase I zinc-ribbon-like BED33_15035 PF10692 Protein of unknown function (DUF2498) BED33_15040 PF01343 Peptidase family S49 BED33_15040 PF08496 BED33_15040 BED33_15045 PF00106 short chain dehydrogenase BED33_15050 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BED33_15050 PF12557 Cob(I)alamin adenosyltransferase N terminal BED33_15060 PF00849 RNA pseudouridylate synthase BED33_15060 PF01479 S4 domain BED33_15065 PF01300 Telomere recombination BED33_15070 PF02811 PHP domain BED33_15075 PF00425 chorismate binding enzyme BED33_15075 PF04715 Anthranilate synthase component I, N terminal region BED33_15080 PF00117 Glutamine amidotransferase class-I BED33_15085 PF00591 Glycosyl transferase family, a/b domain BED33_15085 PF02885 Glycosyl transferase family, helical bundle domain BED33_15090 PF00218 Indole-3-glycerol phosphate synthase BED33_15090 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BED33_15095 PF00291 Pyridoxal-phosphate dependent enzyme BED33_15100 PF00290 Tryptophan synthase alpha chain BED33_15105 PF04972 BON domain BED33_15110 PF03922 OmpW family BED33_15115 PF03692 BED33_15115 BED33_15120 PF06790 BED33_15120 BED33_15125 PF00916 BED33_15125 BED33_15125 PF01740 STAS domain BED33_15130 PF04279 BED33_15130 BED33_15135 PF03061 Thioesterase superfamily BED33_15140 PF03544 Gram-negative bacterial TonB protein C-terminal BED33_15140 PF16031 BED33_15140 BED33_15145 PF03795 YCII-related domain BED33_15155 PF00563 EAL domain BED33_15160 PF13091 PLD-like domain BED33_15160 PF13396 BED33_15160 BED33_15165 PF04269 Protein of unknown function, DUF440 BED33_15170 PF00005 ABC transporter BED33_15170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_15175 PF00005 ABC transporter BED33_15175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_15180 PF00528 Binding-protein-dependent transport system inner membrane component BED33_15180 PF12911 BED33_15180 BED33_15185 PF00528 Binding-protein-dependent transport system inner membrane component BED33_15190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_15195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_15200 PF01914 BED33_15200 BED33_15205 PF00171 Aldehyde dehydrogenase family BED33_15205 PF00465 Iron-containing alcohol dehydrogenase BED33_15210 PF00265 Thymidine kinase BED33_15220 PF00816 H-NS histone family BED33_15225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED33_15225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED33_15225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED33_15230 PF00072 Response regulator receiver domain BED33_15235 PF01734 Patatin-like phospholipase BED33_15245 PF02810 SEC-C motif BED33_15250 PF00551 Formyl transferase BED33_15250 PF01842 ACT domain BED33_15265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_15270 PF03372 Endonuclease/Exonuclease/phosphatase family BED33_15275 PF00293 NUDIX domain BED33_15280 PF07383 BED33_15280 BED33_15285 PF01131 DNA topoisomerase BED33_15285 PF01751 Toprim domain BED33_15290 PF00586 AIR synthase related protein, N-terminal domain BED33_15290 PF02769 AIR synthase related protein, C-terminal domain BED33_15295 PF00881 Nitroreductase family BED33_15300 PF01343 Peptidase family S49 BED33_15305 PF00710 Asparaginase BED33_15310 PF00857 Isochorismatase family BED33_15325 PF01641 SelR domain BED33_15330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED33_15330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED33_15335 PF01263 Aldose 1-epimerase BED33_15340 PF06629 BED33_15340 BED33_15345 PF06798 BED33_15345 BED33_15345 PF08298 PrkA AAA domain BED33_15350 PF04285 BED33_15350 BED33_15355 PF00892 EamA-like transporter family BED33_15365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_15365 PF03466 LysR substrate binding domain BED33_15370 PF02678 Pirin BED33_15370 PF05726 Pirin C-terminal cupin domain BED33_15375 PF00563 EAL domain BED33_15375 PF00990 GGDEF domain BED33_15375 PF08447 PAS fold BED33_15375 PF13185 GAF domain BED33_15375 PF13426 PAS domain BED33_15385 PF00842 Alanine racemase, C-terminal domain BED33_15385 PF01168 Alanine racemase, N-terminal domain BED33_15390 PF01266 FAD dependent oxidoreductase BED33_15395 PF04293 BED33_15395 BED33_15400 PF00392 Bacterial regulatory proteins, gntR family BED33_15400 PF07840 FadR C-terminal domain BED33_15405 PF06450 BED33_15405 BED33_15410 PF02600 Disulfide bond formation protein DsbB BED33_15430 PF03932 CutC family BED33_15435 PF06185 YecM protein BED33_15440 PF00750 tRNA synthetases class I (R) BED33_15440 PF03485 Arginyl tRNA synthetase N terminal domain BED33_15440 PF05746 DALR anticodon binding domain BED33_15445 PF05598 BED33_15445 BED33_15445 PF13751 BED33_15445 BED33_15450 PF02562 PhoH-like protein BED33_15460 PF13302 Acetyltransferase (GNAT) domain BED33_15465 PF13994 BED33_15465 BED33_15470 PF00535 Glycosyl transferase family 2 BED33_15485 PF00557 Metallopeptidase family M24 BED33_15485 PF01321 Creatinase/Prolidase N-terminal domain BED33_15495 PF01411 tRNA synthetases class II (A) BED33_15495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED33_15505 PF03848 Tellurite resistance protein TehB BED33_15505 PF09313 Domain of unknown function (DUF1971) BED33_15510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED33_15515 PF08534 Redoxin BED33_15520 PF00005 ABC transporter BED33_15525 PF02687 BED33_15525 BED33_15525 PF12704 MacB-like periplasmic core domain BED33_15530 PF02687 BED33_15530 BED33_15535 PF04945 YHS domain BED33_15535 PF10080 BED33_15535 BED33_15540 PF10634 Fe2+ transport protein BED33_15545 PF03239 BED33_15545 BED33_15560 PF04960 Glutaminase BED33_15565 PF01261 Xylose isomerase-like TIM barrel BED33_15570 PF00596 Class II Aldolase and Adducin N-terminal domain BED33_15575 PF07005 Protein of unknown function, DUF1537 BED33_15575 PF17042 BED33_15575 BED33_15580 PF00455 BED33_15580 BED33_15580 PF08220 DeoR-like helix-turn-helix domain BED33_15585 PF00989 PAS fold BED33_15585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_15585 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED33_15585 PF17203 BED33_15585 BED33_15590 PF00072 Response regulator receiver domain BED33_15595 PF03390 BED33_15595 BED33_15600 PF00324 Amino acid permease BED33_15605 PF04343 BED33_15605 BED33_15610 PF00480 ROK family BED33_15615 PF07690 Major Facilitator Superfamily BED33_15620 PF08282 haloacid dehalogenase-like hydrolase BED33_15630 PF00872 BED33_15630 BED33_15635 PF08242 Methyltransferase domain BED33_15640 PF00872 BED33_15640 BED33_15650 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BED33_15655 PF08448 PAS fold BED33_15670 PF06995 BED33_15670 BED33_15675 PF05954 Phage late control gene D protein (GPD) BED33_15685 PF00589 Phage integrase family BED33_15690 PF10709 BED33_15690 BED33_15695 PF05425 BED33_15695 BED33_15700 PF04234 CopC domain BED33_15705 PF00210 Ferritin-like domain BED33_15710 PF06440 DNA polymerase III, theta subunit BED33_15715 PF00561 alpha/beta hydrolase fold BED33_15720 PF00929 Exonuclease BED33_15725 PF00326 Prolyl oligopeptidase family BED33_15725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BED33_15730 PF13995 YebF-like protein BED33_15735 PF04266 ASCH domain BED33_15740 PF07130 YebG protein BED33_15745 PF00270 DEAD/DEAH box helicase BED33_15745 PF00271 Helicase conserved C-terminal domain BED33_15745 PF03880 DbpA RNA binding domain BED33_15750 PF02222 ATP-grasp domain BED33_15755 PF03701 BED33_15755 BED33_15760 PF00425 chorismate binding enzyme BED33_15760 PF04715 Anthranilate synthase component I, N terminal region BED33_15765 PF00293 NUDIX domain BED33_15770 PF03313 BED33_15770 BED33_15770 PF03315 Serine dehydratase beta chain BED33_15775 PF01548 BED33_15775 BED33_15775 PF02371 BED33_15775 BED33_15780 PF00571 CBS domain BED33_15780 PF03471 Transporter associated domain BED33_15780 PF03741 BED33_15780 BED33_15785 PF03610 PTS system fructose IIA component BED33_15785 PF03830 PTS system sorbose subfamily IIB component BED33_15790 PF03609 BED33_15790 BED33_15795 PF03613 BED33_15795 BED33_15800 PF06173 BED33_15800 BED33_15805 PF02659 BED33_15805 BED33_15810 PF00593 TonB dependent receptor BED33_15810 PF07715 TonB-dependent Receptor Plug Domain BED33_15815 PF00989 PAS fold BED33_15815 PF00990 GGDEF domain BED33_15815 PF08448 PAS fold BED33_15815 PF13426 PAS domain BED33_15825 PF13847 Methyltransferase domain BED33_15830 PF00905 Penicillin binding protein transpeptidase domain BED33_15830 PF03717 Penicillin-binding Protein dimerisation domain BED33_15835 PF02578 Multi-copper polyphenol oxidoreductase laccase BED33_15840 PF00313 'Cold-shock' DNA-binding domain BED33_15845 PF10736 BED33_15845 BED33_15850 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BED33_15860 PF13269 BED33_15860 BED33_15865 PF10765 Protein of unknown function (DUF2591) BED33_15870 PF13974 BED33_15870 BED33_15875 PF13996 BED33_15875 BED33_15880 PF10964 BED33_15880 BED33_15885 PF12833 Helix-turn-helix domain BED33_15895 PF13520 Amino acid permease BED33_15900 PF00583 Acetyltransferase (GNAT) family BED33_15905 PF00005 ABC transporter BED33_15905 PF00664 ABC transporter transmembrane region BED33_15910 PF01163 RIO1 family BED33_15915 PF03372 Endonuclease/Exonuclease/phosphatase family BED33_15920 PF03498 Cytolethal distending toxin A/C family BED33_15925 PF00990 GGDEF domain BED33_15925 PF08447 PAS fold BED33_15925 PF13426 PAS domain BED33_15935 PF06411 HdeA/HdeB family BED33_15940 PF07007 Protein of unknown function (DUF1311) BED33_15945 PF12833 Helix-turn-helix domain BED33_15950 PF00892 EamA-like transporter family BED33_15960 PF03795 YCII-related domain BED33_15965 PF01638 HxlR-like helix-turn-helix BED33_15970 PF13460 NADH(P)-binding BED33_15975 PF01053 Cys/Met metabolism PLP-dependent enzyme BED33_15985 PF00717 Peptidase S24-like BED33_15990 PF00817 impB/mucB/samB family BED33_15990 PF11798 IMS family HHH motif BED33_15990 PF11799 impB/mucB/samB family C-terminal domain BED33_15990 PF13438 BED33_15990 BED33_15995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_15995 PF08447 PAS fold BED33_16005 PF00356 Bacterial regulatory proteins, lacI family BED33_16005 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_16010 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED33_16010 PF08244 Glycosyl hydrolases family 32 C terminal BED33_16015 PF01306 LacY proton/sugar symporter BED33_16020 PF04932 BED33_16020 BED33_16025 PF00535 Glycosyl transferase family 2 BED33_16030 PF00180 Isocitrate/isopropylmalate dehydrogenase BED33_16035 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) BED33_16060 PF00180 Isocitrate/isopropylmalate dehydrogenase BED33_16065 PF00849 RNA pseudouridylate synthase BED33_16070 PF00293 NUDIX domain BED33_16075 PF03054 tRNA methyl transferase BED33_16080 PF04356 Protein of unknown function (DUF489) BED33_16085 PF00206 Lyase BED33_16085 PF08328 Adenylosuccinate lyase C-terminal BED33_16090 PF13505 Outer membrane protein beta-barrel domain BED33_16095 PF00072 Response regulator receiver domain BED33_16095 PF00486 Transcriptional regulatory protein, C terminal BED33_16100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_16100 PF08918 PhoQ Sensor BED33_16110 PF01546 Peptidase family M20/M25/M40 BED33_16110 PF07687 Peptidase dimerisation domain BED33_16115 PF02146 Sir2 family BED33_16125 PF02687 BED33_16125 BED33_16125 PF12704 MacB-like periplasmic core domain BED33_16130 PF00005 ABC transporter BED33_16135 PF02687 BED33_16135 BED33_16135 PF12704 MacB-like periplasmic core domain BED33_16140 PF00270 DEAD/DEAH box helicase BED33_16140 PF00271 Helicase conserved C-terminal domain BED33_16140 PF02559 CarD-like/TRCF domain BED33_16140 PF03461 TRCF domain BED33_16145 PF05433 BED33_16145 BED33_16150 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_16155 PF05728 Uncharacterised protein family (UPF0227) BED33_16160 PF00933 Glycosyl hydrolase family 3 N terminal domain BED33_16165 PF01636 Phosphotransferase enzyme family BED33_16170 PF13036 Protein of unknown function (DUF3897) BED33_16175 PF07233 Protein of unknown function (DUF1425) BED33_16180 PF01230 HIT domain BED33_16185 PF08501 Shikimate dehydrogenase substrate binding domain BED33_16190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_16190 PF12793 BED33_16190 BED33_16195 PF04055 Radical SAM superfamily BED33_16195 PF13394 4Fe-4S single cluster domain BED33_16200 PF13437 HlyD family secretion protein BED33_16205 PF00005 ABC transporter BED33_16205 PF00664 ABC transporter transmembrane region BED33_16205 PF03412 Peptidase C39 family BED33_16210 PF13650 Aspartyl protease BED33_16215 PF00367 phosphotransferase system, EIIB BED33_16215 PF02378 Phosphotransferase system, EIIC BED33_16220 PF01026 TatD related DNase BED33_16225 PF09115 DNA polymerase III, delta subunit, C terminal BED33_16225 PF13177 DNA polymerase III, delta subunit BED33_16230 PF02223 Thymidylate kinase BED33_16235 PF02618 YceG-like family BED33_16240 PF01063 Aminotransferase class IV BED33_16245 PF00109 Beta-ketoacyl synthase, N-terminal domain BED33_16245 PF02801 Beta-ketoacyl synthase, C-terminal domain BED33_16250 PF00550 Phosphopantetheine attachment site BED33_16255 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_16260 PF00698 Acyl transferase domain BED33_16265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BED33_16265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BED33_16270 PF02504 Fatty acid synthesis protein BED33_16275 PF01783 Ribosomal L32p protein family BED33_16280 PF02620 BED33_16280 BED33_16285 PF02545 Maf-like protein BED33_16290 PF00849 RNA pseudouridylate synthase BED33_16290 PF01479 S4 domain BED33_16295 PF00575 S1 RNA binding domain BED33_16295 PF10150 Ribonuclease E/G family BED33_16295 PF12111 Polyribonucleotide phosphorylase C terminal BED33_16300 PF03992 Antibiotic biosynthesis monooxygenase BED33_16305 PF01979 Amidohydrolase family BED33_16310 PF06183 DinI-like family BED33_16315 PF13991 BED33_16315 BED33_16320 PF01266 FAD dependent oxidoreductase BED33_16325 PF00196 Bacterial regulatory proteins, luxR family BED33_16330 PF01594 BED33_16330 BED33_16335 PF00581 Rhodanese-like domain BED33_16335 PF12368 BED33_16335 BED33_16345 PF03916 BED33_16345 BED33_16350 PF13247 4Fe-4S dicluster domain BED33_16360 PF00072 Response regulator receiver domain BED33_16360 PF00196 Bacterial regulatory proteins, luxR family BED33_16365 PF03279 BED33_16365 BED33_16375 PF07681 BED33_16375 BED33_16385 PF07690 Major Facilitator Superfamily BED33_16390 PF00854 POT family BED33_16395 PF00535 Glycosyl transferase family 2 BED33_16400 PF04349 Periplasmic glucan biosynthesis protein, MdoG BED33_16405 PF01757 BED33_16405 BED33_16415 PF01548 BED33_16415 BED33_16415 PF02371 BED33_16415 BED33_16420 PF00999 Sodium/hydrogen exchanger family BED33_16420 PF02080 TrkA-C domain BED33_16420 PF03471 Transporter associated domain BED33_16425 PF00892 EamA-like transporter family BED33_16430 PF00765 Autoinducer synthetase BED33_16435 PF00196 Bacterial regulatory proteins, luxR family BED33_16435 PF03472 Autoinducer binding domain BED33_16450 PF08534 Redoxin BED33_16460 PF03916 BED33_16460 BED33_16465 PF12800 4Fe-4S binding domain BED33_16465 PF13247 4Fe-4S dicluster domain BED33_16470 PF13435 Cytochrome c554 and c-prime BED33_16475 PF02335 Cytochrome c552 BED33_16485 PF04358 DsrC like protein BED33_16490 PF00708 Acylphosphatase BED33_16495 PF07784 BED33_16495 BED33_16505 PF10672 S-adenosylmethionine-dependent methyltransferase BED33_16510 PF08755 Hemimethylated DNA-binding protein YccV like BED33_16515 PF13380 CoA binding domain BED33_16520 PF09829 BED33_16520 BED33_16525 PF02142 MGS-like domain BED33_16530 PF00580 UvrD/REP helicase N-terminal domain BED33_16530 PF12462 BED33_16530 BED33_16530 PF13361 UvrD-like helicase C-terminal domain BED33_16535 PF03733 BED33_16535 BED33_16540 PF12805 BED33_16540 BED33_16540 PF13515 BED33_16540 BED33_16545 PF04993 TfoX N-terminal domain BED33_16545 PF04994 TfoX C-terminal domain BED33_16555 PF00691 OmpA family BED33_16555 PF01389 OmpA-like transmembrane domain BED33_16560 PF06303 Organiser of macrodomain of Terminus of chromosome BED33_16560 PF17414 BED33_16560 BED33_16565 PF05362 Lon protease (S16) C-terminal proteolytic domain BED33_16565 PF13654 AAA domain BED33_16570 PF07977 FabA-like domain BED33_16575 PF01638 HxlR-like helix-turn-helix BED33_16580 PF00109 Beta-ketoacyl synthase, N-terminal domain BED33_16580 PF02801 Beta-ketoacyl synthase, C-terminal domain BED33_16585 PF03886 Protein of unknown function (DUF330) BED33_16590 PF02470 BED33_16590 BED33_16595 PF04403 BED33_16595 BED33_16600 PF00005 ABC transporter BED33_16600 PF12848 ABC transporter BED33_16600 PF16326 BED33_16600 BED33_16605 PF01170 Putative RNA methylase family UPF0020 BED33_16605 PF02926 THUMP domain BED33_16605 PF10672 S-adenosylmethionine-dependent methyltransferase BED33_16610 PF00111 2Fe-2S iron-sulfur cluster binding domain BED33_16610 PF03473 MOSC domain BED33_16610 PF03476 MOSC N-terminal beta barrel domain BED33_16615 PF07126 BED33_16615 BED33_16620 PF01180 Dihydroorotate dehydrogenase BED33_16625 PF01433 Peptidase family M1 BED33_16625 PF11940 Domain of unknown function (DUF3458) BED33_16625 PF17432 BED33_16625 BED33_16630 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BED33_16635 PF00152 tRNA synthetases class II (D, K and N) BED33_16635 PF01336 OB-fold nucleic acid binding domain BED33_16640 PF00267 Gram-negative porin BED33_16645 PF00155 Aminotransferase class I and II BED33_16655 PF00753 Metallo-beta-lactamase superfamily BED33_16660 PF05951 BED33_16660 BED33_16665 PF01471 Putative peptidoglycan binding domain BED33_16665 PF03734 L,D-transpeptidase catalytic domain BED33_16670 PF04310 MukB N-terminal BED33_16670 PF13558 Putative exonuclease SbcCD, C subunit BED33_16670 PF16330 BED33_16670 BED33_16675 PF04288 MukE-like family BED33_16680 PF03882 KicB killing factor BED33_16680 PF17192 BED33_16680 BED33_16680 PF17193 BED33_16680 BED33_16685 PF13847 Methyltransferase domain BED33_16690 PF02698 DUF218 domain BED33_16695 PF03881 Fructosamine kinase BED33_16700 PF02348 Cytidylyltransferase BED33_16705 PF03966 Trm112p-like protein BED33_16710 PF00313 'Cold-shock' DNA-binding domain BED33_16715 PF00313 'Cold-shock' DNA-binding domain BED33_16720 PF07063 Domain of unknown function (DUF1338) BED33_16725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BED33_16730 PF00005 ABC transporter BED33_16730 PF00664 ABC transporter transmembrane region BED33_16735 PF00753 Metallo-beta-lactamase superfamily BED33_16735 PF03772 BED33_16735 BED33_16735 PF13567 BED33_16735 BED33_16740 PF00216 Bacterial DNA-binding protein BED33_16745 PF00575 S1 RNA binding domain BED33_16750 PF02224 Cytidylate kinase BED33_16755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED33_16760 PF00266 Aminotransferase class-V BED33_16765 PF04239 Protein of unknown function (DUF421) BED33_16770 PF00710 Asparaginase BED33_16775 PF02624 YcaO-like family BED33_16780 PF01226 Formate/nitrite transporter BED33_16785 PF01228 Glycine radical BED33_16785 PF02901 Pyruvate formate lyase BED33_16790 PF04055 Radical SAM superfamily BED33_16790 PF13353 4Fe-4S single cluster domain BED33_16795 PF07690 Major Facilitator Superfamily BED33_16800 PF00872 BED33_16800 BED33_16810 PF01548 BED33_16810 BED33_16810 PF02371 BED33_16810 BED33_16815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED33_16815 PF02403 Seryl-tRNA synthetase N-terminal domain BED33_16820 PF00004 ATPase family associated with various cellular activities (AAA) BED33_16820 PF12002 MgsA AAA+ ATPase C terminal BED33_16820 PF16193 BED33_16820 BED33_16825 PF03548 Outer membrane lipoprotein carrier protein LolA BED33_16830 PF01580 FtsK/SpoIIIE family BED33_16830 PF09397 Ftsk gamma domain BED33_16830 PF13491 BED33_16830 BED33_16835 PF01037 AsnC family BED33_16835 PF13412 Winged helix-turn-helix DNA-binding BED33_16840 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_16845 PF00005 ABC transporter BED33_16845 PF00664 ABC transporter transmembrane region BED33_16850 PF00005 ABC transporter BED33_16850 PF00664 ABC transporter transmembrane region BED33_16855 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BED33_16860 PF01176 Translation initiation factor 1A / IF-1 BED33_16865 PF00004 ATPase family associated with various cellular activities (AAA) BED33_16865 PF02861 Clp amino terminal domain BED33_16865 PF07724 AAA domain (Cdc48 subfamily) BED33_16865 PF10431 C-terminal, D2-small domain, of ClpB protein BED33_16870 PF02617 ATP-dependent Clp protease adaptor protein ClpS BED33_16875 PF00313 'Cold-shock' DNA-binding domain BED33_16880 PF00005 ABC transporter BED33_16880 PF02687 BED33_16880 BED33_16880 PF12704 MacB-like periplasmic core domain BED33_16885 PF16576 BED33_16885 BED33_16890 PF04393 BED33_16890 BED33_16895 PF11398 Protein of unknown function (DUF2813) BED33_16900 PF03956 BED33_16900 BED33_16905 PF03063 Prismane/CO dehydrogenase family BED33_16910 PF00111 2Fe-2S iron-sulfur cluster binding domain BED33_16910 PF00175 Oxidoreductase NAD-binding domain BED33_16910 PF00970 Oxidoreductase FAD-binding domain BED33_16915 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_16915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_16915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_16920 PF04072 Leucine carboxyl methyltransferase BED33_16925 PF01212 Beta-eliminating lyase BED33_16930 PF11066 BED33_16930 BED33_16930 PF13460 NADH(P)-binding BED33_16935 PF01370 NAD dependent epimerase/dehydratase family BED33_16940 PF12883 Protein of unknown function (DUF3828) BED33_16945 PF00005 ABC transporter BED33_16950 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_16955 PF00528 Binding-protein-dependent transport system inner membrane component BED33_16960 PF00528 Binding-protein-dependent transport system inner membrane component BED33_16965 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_16970 PF05958 tRNA (Uracil-5-)-methyltransferase BED33_16975 PF10767 BED33_16975 BED33_16980 PF00528 Binding-protein-dependent transport system inner membrane component BED33_16985 PF00528 Binding-protein-dependent transport system inner membrane component BED33_16990 PF00005 ABC transporter BED33_16990 PF08402 TOBE domain BED33_16995 PF13416 Bacterial extracellular solute-binding protein BED33_17000 PF10722 Putative bacterial sensory transduction regulator BED33_17005 PF07214 BED33_17005 BED33_17010 PF00462 Glutaredoxin BED33_17015 PF02080 TrkA-C domain BED33_17015 PF06826 BED33_17015 BED33_17020 PF01569 PAP2 superfamily BED33_17025 PF01569 PAP2 superfamily BED33_17030 PF01791 DeoC/LacD family aldolase BED33_17035 PF00455 BED33_17035 BED33_17035 PF08220 DeoR-like helix-turn-helix domain BED33_17040 PF03222 Tryptophan/tyrosine permease family BED33_17045 PF03313 BED33_17045 BED33_17045 PF03315 Serine dehydratase beta chain BED33_17050 PF01548 BED33_17050 BED33_17050 PF02371 BED33_17050 BED33_17055 PF00768 D-alanyl-D-alanine carboxypeptidase BED33_17055 PF07943 Penicillin-binding protein 5, C-terminal domain BED33_17060 PF00291 Pyridoxal-phosphate dependent enzyme BED33_17060 PF00571 CBS domain BED33_17065 PF01053 Cys/Met metabolism PLP-dependent enzyme BED33_17070 PF00528 Binding-protein-dependent transport system inner membrane component BED33_17075 PF00005 ABC transporter BED33_17075 PF09383 NIL domain BED33_17080 PF03180 NLPA lipoprotein BED33_17085 PF03171 2OG-Fe(II) oxygenase superfamily BED33_17085 PF14226 non-haem dioxygenase in morphine synthesis N-terminal BED33_17090 PF12710 haloacid dehalogenase-like hydrolase BED33_17095 PF00043 Glutathione S-transferase, C-terminal domain BED33_17095 PF02798 Glutathione S-transferase, N-terminal domain BED33_17100 PF00593 TonB dependent receptor BED33_17100 PF07715 TonB-dependent Receptor Plug Domain BED33_17105 PF00005 ABC transporter BED33_17110 PF01032 FecCD transport family BED33_17115 PF00324 Amino acid permease BED33_17120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_17120 PF03466 LysR substrate binding domain BED33_17135 PF03601 BED33_17135 BED33_17140 PF01261 Xylose isomerase-like TIM barrel BED33_17145 PF00577 Outer membrane usher protein BED33_17145 PF13953 PapC C-terminal domain BED33_17145 PF13954 PapC N-terminal domain BED33_17150 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED33_17150 PF02753 Pili assembly chaperone PapD, C-terminal domain BED33_17160 PF17550 BED33_17160 BED33_17165 PF00486 Transcriptional regulatory protein, C terminal BED33_17170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED33_17170 PF02378 Phosphotransferase system, EIIC BED33_17175 PF00294 pfkB family carbohydrate kinase BED33_17180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_17180 PF00381 PTS HPr component phosphorylation site BED33_17185 PF00293 NUDIX domain BED33_17190 PF03264 NapC/NirT cytochrome c family, N-terminal region BED33_17195 PF00384 Molybdopterin oxidoreductase BED33_17195 PF01568 Molydopterin dinucleotide binding domain BED33_17200 PF03692 BED33_17200 BED33_17205 PF03222 Tryptophan/tyrosine permease family BED33_17210 PF01132 Elongation factor P (EF-P) OB domain BED33_17210 PF08207 Elongation factor P (EF-P) KOW-like domain BED33_17210 PF09285 Elongation factor P, C-terminal BED33_17215 PF03786 D-mannonate dehydratase (UxuA) BED33_17225 PF01232 Mannitol dehydrogenase Rossmann domain BED33_17225 PF08125 Mannitol dehydrogenase C-terminal domain BED33_17230 PF00392 Bacterial regulatory proteins, gntR family BED33_17230 PF07729 FCD domain BED33_17240 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED33_17240 PF07683 Cobalamin synthesis protein cobW C-terminal domain BED33_17245 PF01569 PAP2 superfamily BED33_17250 PF00877 NlpC/P60 family BED33_17260 PF00563 EAL domain BED33_17260 PF12792 BED33_17260 BED33_17265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_17270 PF00528 Binding-protein-dependent transport system inner membrane component BED33_17275 PF00528 Binding-protein-dependent transport system inner membrane component BED33_17275 PF12911 BED33_17275 BED33_17280 PF00005 ABC transporter BED33_17280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED33_17285 PF13989 BED33_17285 BED33_17290 PF07690 Major Facilitator Superfamily BED33_17295 PF00849 RNA pseudouridylate synthase BED33_17295 PF01479 S4 domain BED33_17300 PF00271 Helicase conserved C-terminal domain BED33_17300 PF04851 Type III restriction enzyme, res subunit BED33_17305 PF01386 Ribosomal L25p family BED33_17310 PF04245 BED33_17310 BED33_17315 PF07208 Protein of unknown function (DUF1414) BED33_17320 PF00884 Sulfatase BED33_17320 PF11893 BED33_17320 BED33_17335 PF07377 Protein of unknown function (DUF1493) BED33_17340 PF00872 BED33_17340 BED33_17345 PF06551 BED33_17345 BED33_17350 PF01527 Transposase BED33_17355 PF13276 BED33_17355 BED33_17365 PF00891 O-methyltransferase BED33_17370 PF00194 Eukaryotic-type carbonic anhydrase BED33_17375 PF00232 Glycosyl hydrolase family 1 BED33_17380 PF00367 phosphotransferase system, EIIB BED33_17380 PF02378 Phosphotransferase system, EIIC BED33_17385 PF01380 SIS domain BED33_17385 PF01418 Helix-turn-helix domain, rpiR family BED33_17395 PF10828 BED33_17395 BED33_17405 PF06530 BED33_17405 BED33_17410 PF00717 Peptidase S24-like BED33_17410 PF01381 Helix-turn-helix BED33_17415 PF06183 DinI-like family BED33_17420 PF01278 Omptin family BED33_17425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED33_17425 PF00672 HAMP domain BED33_17425 PF02743 Cache domain BED33_17430 PF12706 Beta-lactamase superfamily domain BED33_17435 PF13347 MFS/sugar transport protein BED33_17440 PF00144 Beta-lactamase BED33_17455 PF00267 Gram-negative porin BED33_17460 PF00529 HlyD family secretion protein BED33_17465 PF13533 Biotin-lipoyl like BED33_17470 PF07690 Major Facilitator Superfamily BED33_17475 PF01627 Hpt domain BED33_17475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_17475 PF16359 BED33_17475 BED33_17480 PF00072 Response regulator receiver domain BED33_17480 PF00196 Bacterial regulatory proteins, luxR family BED33_17485 PF00072 Response regulator receiver domain BED33_17485 PF00512 His Kinase A (phospho-acceptor) domain BED33_17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_17485 PF09456 RcsC Alpha-Beta-Loop (ABL) BED33_17490 PF00521 DNA gyrase/topoisomerase IV, subunit A BED33_17490 PF03989 DNA gyrase C-terminal domain, beta-propeller BED33_17495 PF13489 Methyltransferase domain BED33_17500 PF00317 Ribonucleotide reductase, all-alpha domain BED33_17500 PF02867 Ribonucleotide reductase, barrel domain BED33_17500 PF03477 ATP cone domain BED33_17505 PF00268 Ribonucleotide reductase, small chain BED33_17515 PF03974 Ecotin BED33_17530 PF00994 Probable molybdopterin binding domain BED33_17535 PF03222 Tryptophan/tyrosine permease family BED33_17540 PF07437 BED33_17540 BED33_17545 PF00199 Catalase BED33_17545 PF06628 Catalase-related immune-responsive BED33_17550 PF00501 AMP-binding enzyme BED33_17550 PF13193 AMP-binding enzyme C-terminal domain BED33_17555 PF13378 Enolase C-terminal domain-like BED33_17560 PF00378 Enoyl-CoA hydratase/isomerase family BED33_17565 PF12697 Alpha/beta hydrolase family BED33_17570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_17570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_17570 PF16582 BED33_17570 BED33_17575 PF00425 chorismate binding enzyme BED33_17580 PF05957 BED33_17580 BED33_17585 PF00920 Dehydratase family BED33_17590 PF03928 Domain of unknown function (DUF336) BED33_17595 PF07690 Major Facilitator Superfamily BED33_17600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED33_17600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_17605 PF00356 Bacterial regulatory proteins, lacI family BED33_17605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_17610 PF00106 short chain dehydrogenase BED33_17615 PF01202 Shikimate kinase BED33_17620 PF04074 Domain of unknown function (DUF386) BED33_17625 PF06496 BED33_17625 BED33_17635 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_17640 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_17645 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains BED33_17645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED33_17650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED33_17655 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BED33_17660 PF12838 4Fe-4S dicluster domain BED33_17665 PF00146 NADH dehydrogenase BED33_17670 PF00384 Molybdopterin oxidoreductase BED33_17670 PF01568 Molydopterin dinucleotide binding domain BED33_17670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED33_17670 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED33_17670 PF13510 2Fe-2S iron-sulfur cluster binding domain BED33_17675 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED33_17675 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED33_17680 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin BED33_17685 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED33_17685 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED33_17690 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED33_17695 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BED33_17700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_17700 PF03466 LysR substrate binding domain BED33_17705 PF00155 Aminotransferase class I and II BED33_17710 PF13023 HD domain BED33_17715 PF02080 TrkA-C domain BED33_17715 PF03600 Citrate transporter BED33_17725 PF13419 Haloacid dehalogenase-like hydrolase BED33_17730 PF03887 YfbU domain BED33_17735 PF04217 BED33_17735 BED33_17740 PF00871 Acetokinase family BED33_17745 PF01515 Phosphate acetyl/butaryl transferase BED33_17745 PF07085 DRTGG domain BED33_17745 PF13500 AAA domain BED33_17750 PF00356 Bacterial regulatory proteins, lacI family BED33_17750 PF13377 Periplasmic binding protein-like domain BED33_17755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED33_17760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED33_17765 PF03611 BED33_17765 BED33_17770 PF01548 BED33_17770 BED33_17770 PF02371 BED33_17770 BED33_17775 PF00293 NUDIX domain BED33_17785 PF00563 EAL domain BED33_17790 PF01370 NAD dependent epimerase/dehydratase family BED33_17790 PF08338 Domain of unknown function (DUF1731) BED33_17800 PF00005 ABC transporter BED33_17805 PF00528 Binding-protein-dependent transport system inner membrane component BED33_17810 PF00528 Binding-protein-dependent transport system inner membrane component BED33_17815 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_17820 PF02441 Flavoprotein BED33_17825 PF00156 Phosphoribosyl transferase domain BED33_17825 PF13522 Glutamine amidotransferase domain BED33_17830 PF02674 BED33_17830 BED33_17835 PF05036 Sporulation related domain BED33_17840 PF02875 Mur ligase family, glutamate ligase domain BED33_17840 PF08245 Mur ligase middle domain BED33_17845 PF01039 Carboxyl transferase domain BED33_17850 PF09335 BED33_17850 BED33_17855 PF01416 tRNA pseudouridine synthase BED33_17860 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED33_17860 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED33_17865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED33_17865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED33_17865 PF11890 Domain of unknown function (DUF3410) BED33_17870 PF07883 Cupin domain BED33_17870 PF12833 Helix-turn-helix domain BED33_17880 PF00892 EamA-like transporter family BED33_17885 PF00155 Aminotransferase class I and II BED33_17885 PF00392 Bacterial regulatory proteins, gntR family BED33_17890 PF00578 AhpC/TSA family BED33_17895 PF13462 Thioredoxin BED33_17900 PF02683 BED33_17900 BED33_17900 PF11412 Disulphide bond corrector protein DsbC BED33_17900 PF13899 Thioredoxin-like BED33_17915 PF03600 Citrate transporter BED33_17920 PF00328 Histidine phosphatase superfamily (branch 2) BED33_17925 PF00356 Bacterial regulatory proteins, lacI family BED33_17925 PF13377 Periplasmic binding protein-like domain BED33_17930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED33_17935 PF02378 Phosphotransferase system, EIIC BED33_17940 PF00232 Glycosyl hydrolase family 1 BED33_17945 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED33_17950 PF02264 LamB porin BED33_17955 PF01177 Asp/Glu/Hydantoin racemase BED33_17965 PF00109 Beta-ketoacyl synthase, N-terminal domain BED33_17965 PF02801 Beta-ketoacyl synthase, C-terminal domain BED33_17970 PF01266 FAD dependent oxidoreductase BED33_17970 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BED33_17975 PF08891 BED33_17975 BED33_17980 PF04315 BED33_17980 BED33_17985 PF01925 BED33_17985 BED33_17990 PF03411 Penicillin-insensitive murein endopeptidase BED33_17995 PF01264 Chorismate synthase BED33_18000 PF05175 Methyltransferase small domain BED33_18005 PF01713 Smr domain BED33_18010 PF00300 Histidine phosphatase superfamily (branch 1) BED33_18015 PF00378 Enoyl-CoA hydratase/isomerase family BED33_18015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED33_18015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED33_18020 PF00108 Thiolase, N-terminal domain BED33_18020 PF02803 Thiolase, C-terminal domain BED33_18025 PF04175 Protein of unknown function (DUF406) BED33_18030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BED33_18035 PF04333 BED33_18035 BED33_18040 PF14559 Tetratricopeptide repeat BED33_18045 PF03918 Cytochrome C biogenesis protein BED33_18050 PF08534 Redoxin BED33_18055 PF01578 BED33_18055 BED33_18055 PF16327 BED33_18055 BED33_18060 PF03100 CcmE BED33_18065 PF04995 BED33_18065 BED33_18070 PF01578 BED33_18070 BED33_18075 PF03379 BED33_18075 BED33_18080 PF00005 ABC transporter BED33_18085 PF01548 BED33_18085 BED33_18085 PF02371 BED33_18085 BED33_18090 PF01226 Formate/nitrite transporter BED33_18100 PF00589 Phage integrase family BED33_18100 PF13356 Domain of unknown function (DUF4102) BED33_18110 PF04606 BED33_18110 BED33_18115 PF06048 BED33_18115 BED33_18115 PF08273 Zinc-binding domain of primase-helicase BED33_18115 PF13362 Toprim domain BED33_18135 PF05929 BED33_18135 BED33_18140 PF05125 BED33_18140 BED33_18150 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED33_18160 PF03831 PhnA protein BED33_18160 PF08274 PhnA Zinc-Ribbon BED33_18165 PF03551 Transcriptional regulator PadR-like family BED33_18170 PF12977 Domain of Unknown Function with PDB structure (DUF3861) BED33_18175 PF00232 Glycosyl hydrolase family 1 BED33_18180 PF00367 phosphotransferase system, EIIB BED33_18180 PF02378 Phosphotransferase system, EIIC BED33_18185 PF00356 Bacterial regulatory proteins, lacI family BED33_18185 PF13377 Periplasmic binding protein-like domain BED33_18190 PF04264 YceI-like domain BED33_18195 PF01292 Prokaryotic cytochrome b561 BED33_18200 PF07859 alpha/beta hydrolase fold BED33_18210 PF03886 Protein of unknown function (DUF330) BED33_18215 PF02470 BED33_18215 BED33_18220 PF00005 ABC transporter BED33_18225 PF02405 BED33_18225 BED33_18230 PF07690 Major Facilitator Superfamily BED33_18235 PF00440 Bacterial regulatory proteins, tetR family BED33_18235 PF13977 Bacterial transcriptional repressor BED33_18240 PF07969 Amidohydrolase family BED33_18245 PF00324 Amino acid permease BED33_18250 PF13406 Transglycosylase SLT domain BED33_18255 PF13343 Bacterial extracellular solute-binding protein BED33_18260 PF00528 Binding-protein-dependent transport system inner membrane component BED33_18265 PF00005 ABC transporter BED33_18275 PF09900 BED33_18275 BED33_18280 PF15970 BED33_18280 BED33_18285 PF01292 Prokaryotic cytochrome b561 BED33_18290 PF00155 Aminotransferase class I and II BED33_18295 PF13302 Acetyltransferase (GNAT) domain BED33_18300 PF07350 Protein of unknown function (DUF1479) BED33_18310 PF00072 Response regulator receiver domain BED33_18310 PF04397 LytTr DNA-binding domain BED33_18320 PF02685 Glucokinase BED33_18325 PF05232 BED33_18325 BED33_18330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_18330 PF03466 LysR substrate binding domain BED33_18335 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_18335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_18335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_18340 PF00248 Aldo/keto reductase family BED33_18345 PF10697 BED33_18345 BED33_18355 PF01773 Na+ dependent nucleoside transporter N-terminus BED33_18355 PF07662 Na+ dependent nucleoside transporter C-terminus BED33_18355 PF07670 Nucleoside recognition BED33_18385 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED33_18400 PF06042 Bacterial protein of unknown function (DUF925) BED33_18405 PF14282 BED33_18405 BED33_18410 PF12843 BED33_18410 BED33_18415 PF00533 BRCA1 C Terminus (BRCT) domain BED33_18415 PF01653 NAD-dependent DNA ligase adenylation domain BED33_18415 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BED33_18415 PF03120 NAD-dependent DNA ligase OB-fold domain BED33_18415 PF12826 Helix-hairpin-helix motif BED33_18415 PF14520 Helix-hairpin-helix domain BED33_18420 PF04354 ZipA, C-terminal FtsZ-binding domain BED33_18425 PF07264 Etoposide-induced protein 2 BED33_18430 PF00291 Pyridoxal-phosphate dependent enzyme BED33_18435 PF00381 PTS HPr component phosphorylation site BED33_18440 PF00391 PEP-utilising enzyme, mobile domain BED33_18440 PF02896 PEP-utilising enzyme, TIM barrel domain BED33_18440 PF05524 PEP-utilising enzyme, N-terminal BED33_18445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED33_18450 PF00512 His Kinase A (phospho-acceptor) domain BED33_18450 PF00672 HAMP domain BED33_18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_18455 PF00072 Response regulator receiver domain BED33_18455 PF00486 Transcriptional regulatory protein, C terminal BED33_18460 PF16576 BED33_18460 BED33_18465 PF00005 ABC transporter BED33_18465 PF02687 BED33_18465 BED33_18465 PF12704 MacB-like periplasmic core domain BED33_18470 PF00291 Pyridoxal-phosphate dependent enzyme BED33_18475 PF00005 ABC transporter BED33_18480 PF00528 Binding-protein-dependent transport system inner membrane component BED33_18485 PF00528 Binding-protein-dependent transport system inner membrane component BED33_18490 PF13531 Bacterial extracellular solute-binding protein BED33_18495 PF07690 Major Facilitator Superfamily BED33_18500 PF01380 SIS domain BED33_18500 PF01418 Helix-turn-helix domain, rpiR family BED33_18505 PF04074 Domain of unknown function (DUF386) BED33_18510 PF00480 ROK family BED33_18515 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BED33_18520 PF00701 Dihydrodipicolinate synthetase family BED33_18525 PF01548 BED33_18525 BED33_18525 PF02371 BED33_18525 BED33_18530 PF04261 Dyp-type peroxidase family BED33_18535 PF06572 Protein of unknown function (DUF1131) BED33_18540 PF04076 Bacterial OB fold (BOF) protein BED33_18545 PF00583 Acetyltransferase (GNAT) family BED33_18550 PF01218 Coproporphyrinogen III oxidase BED33_18555 PF02639 BED33_18555 BED33_18565 PF00390 Malic enzyme, N-terminal domain BED33_18565 PF01515 Phosphate acetyl/butaryl transferase BED33_18565 PF03949 Malic enzyme, NAD binding domain BED33_18570 PF00293 NUDIX domain BED33_18580 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BED33_18585 PF00384 Molybdopterin oxidoreductase BED33_18585 PF01568 Molydopterin dinucleotide binding domain BED33_18585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED33_18585 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED33_18590 PF03927 NapD protein BED33_18595 PF12838 4Fe-4S dicluster domain BED33_18595 PF13187 4Fe-4S dicluster domain BED33_18600 PF00072 Response regulator receiver domain BED33_18600 PF00196 Bacterial regulatory proteins, luxR family BED33_18605 PF09904 Winged helix-turn helix BED33_18610 PF00873 AcrB/AcrD/AcrF family BED33_18620 PF02624 YcaO-like family BED33_18625 PF12688 Tetratrico peptide repeat BED33_18630 PF03960 ArsC family BED33_18635 PF01546 Peptidase family M20/M25/M40 BED33_18635 PF07687 Peptidase dimerisation domain BED33_18640 PF02557 D-alanyl-D-alanine carboxypeptidase BED33_18645 PF13980 BED33_18645 BED33_18660 PF13505 Outer membrane protein beta-barrel domain BED33_18675 PF01548 BED33_18675 BED33_18675 PF02371 BED33_18675 BED33_18680 PF03245 BED33_18680 BED33_18685 PF02230 Phospholipase/Carboxylesterase BED33_18700 PF05127 Helicase BED33_18700 PF08351 Domain of unknown function (DUF1726) BED33_18700 PF13718 GNAT acetyltransferase 2 BED33_18700 PF17176 BED33_18700 BED33_18705 PF04284 BED33_18705 BED33_18710 PF04228 BED33_18710 BED33_18715 PF01259 SAICAR synthetase BED33_18720 PF06804 NlpB/DapX lipoprotein BED33_18725 PF00701 Dihydrodipicolinate synthetase family BED33_18730 PF13740 ACT domain BED33_18735 PF00578 AhpC/TSA family BED33_18740 PF01594 BED33_18740 BED33_18745 PF01435 Peptidase family M48 BED33_18745 PF14559 Tetratricopeptide repeat BED33_18750 PF03960 ArsC family BED33_18755 PF00308 Bacterial dnaA protein BED33_18760 PF00860 Permease family BED33_18765 PF14681 Uracil phosphoribosyltransferase BED33_18775 PF00551 Formyl transferase BED33_18780 PF13302 Acetyltransferase (GNAT) domain BED33_18790 PF00005 ABC transporter BED33_18795 PF00528 Binding-protein-dependent transport system inner membrane component BED33_18800 PF00528 Binding-protein-dependent transport system inner membrane component BED33_18805 PF02503 Polyphosphate kinase middle domain BED33_18805 PF13089 Polyphosphate kinase N-terminal domain BED33_18805 PF13090 Polyphosphate kinase C-terminal domain BED33_18810 PF02541 Ppx/GppA phosphatase family BED33_18815 PF11119 BED33_18815 BED33_18825 PF00563 EAL domain BED33_18825 PF00990 GGDEF domain BED33_18825 PF05231 BED33_18825 BED33_18825 PF08447 PAS fold BED33_18825 PF08448 PAS fold BED33_18830 PF00012 Hsp70 protein BED33_18835 PF13437 HlyD family secretion protein BED33_18835 PF13533 Biotin-lipoyl like BED33_18840 PF00873 AcrB/AcrD/AcrF family BED33_18845 PF00873 AcrB/AcrD/AcrF family BED33_18850 PF07690 Major Facilitator Superfamily BED33_18855 PF00512 His Kinase A (phospho-acceptor) domain BED33_18855 PF00672 HAMP domain BED33_18855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_18860 PF00072 Response regulator receiver domain BED33_18860 PF00486 Transcriptional regulatory protein, C terminal BED33_18865 PF07411 Domain of unknown function (DUF1508) BED33_18870 PF01136 BED33_18870 BED33_18870 PF16325 BED33_18870 BED33_18875 PF00781 Diacylglycerol kinase catalytic domain BED33_18880 PF03608 BED33_18880 BED33_18885 PF03612 BED33_18885 BED33_18885 PF07663 BED33_18885 BED33_18890 PF03829 PTS system glucitol/sorbitol-specific IIA component BED33_18895 PF00106 short chain dehydrogenase BED33_18900 PF06923 BED33_18900 BED33_18905 PF00455 BED33_18905 BED33_18905 PF08220 DeoR-like helix-turn-helix domain BED33_18910 PF00571 CBS domain BED33_18910 PF01380 SIS domain BED33_18915 PF08816 Inhibitor of vertebrate lysozyme (Ivy) BED33_18925 PF08543 Phosphomethylpyrimidine kinase BED33_18940 PF03864 Phage major capsid protein E BED33_18955 PF00872 BED33_18955 BED33_18985 PF00589 Phage integrase family BED33_18995 PF01548 BED33_18995 BED33_18995 PF02371 BED33_18995 BED33_19000 PF00034 Cytochrome c BED33_19000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED33_19010 PF12318 BED33_19010 BED33_19020 PF00117 Glutamine amidotransferase class-I BED33_19020 PF00958 GMP synthase C terminal domain BED33_19020 PF02540 NAD synthase BED33_19025 PF00478 IMP dehydrogenase / GMP reductase domain BED33_19025 PF00571 CBS domain BED33_19030 PF02601 BED33_19030 BED33_19030 PF13742 BED33_19030 BED33_19035 PF07191 zinc-ribbons BED33_19040 PF03547 BED33_19040 BED33_19045 PF01548 BED33_19045 BED33_19045 PF02371 BED33_19045 BED33_19050 PF01926 50S ribosome-binding GTPase BED33_19050 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BED33_19060 PF13360 PQQ-like domain BED33_19070 PF03129 Anticodon binding domain BED33_19070 PF13393 Histidyl-tRNA synthetase BED33_19075 PF04551 GcpE protein BED33_19080 PF13413 Helix-turn-helix domain BED33_19080 PF13464 BED33_19080 BED33_19085 PF13181 Tetratricopeptide repeat BED33_19090 PF04055 Radical SAM superfamily BED33_19095 PF00334 Nucleoside diphosphate kinase BED33_19105 PF00905 Penicillin binding protein transpeptidase domain BED33_19105 PF00912 Transglycosylase BED33_19105 PF06832 BED33_19105 BED33_19110 PF00207 Alpha-2-macroglobulin family BED33_19110 PF01835 MG2 domain BED33_19110 PF07703 Alpha-2-macroglobulin family N-terminal region BED33_19110 PF10569 Alpha-macro-globulin thiol-ester bond-forming region BED33_19110 PF11974 Alpha-2-macroglobulin MG1 domain BED33_19115 PF03212 Pertactin BED33_19115 PF03797 Autotransporter beta-domain BED33_19120 PF07179 BED33_19120 BED33_19120 PF14581 BED33_19120 BED33_19125 PF00883 Cytosol aminopeptidase family, catalytic domain BED33_19125 PF12404 BED33_19125 BED33_19130 PF04384 Iron-sulphur cluster assembly BED33_19135 PF00111 2Fe-2S iron-sulfur cluster binding domain BED33_19140 PF00012 Hsp70 protein BED33_19145 PF00226 DnaJ domain BED33_19145 PF07743 HSCB C-terminal oligomerisation domain BED33_19150 PF01521 Iron-sulphur cluster biosynthesis BED33_19155 PF01592 NifU-like N terminal domain BED33_19160 PF00266 Aminotransferase class-V BED33_19165 PF02082 Transcriptional regulator BED33_19170 PF00588 SpoU rRNA Methylase family BED33_19175 PF00459 Inositol monophosphatase family BED33_19180 PF03824 BED33_19180 BED33_19185 PF06226 BED33_19185 BED33_19195 PF12832 MFS_1 like family BED33_19200 PF00464 Serine hydroxymethyltransferase BED33_19205 PF00042 Globin BED33_19205 PF00175 Oxidoreductase NAD-binding domain BED33_19205 PF00970 Oxidoreductase FAD-binding domain BED33_19210 PF14502 Helix-turn-helix domain BED33_19210 PF14503 YhfZ C-terminal domain BED33_19215 PF00874 PRD domain BED33_19220 PF01168 Alanine racemase, N-terminal domain BED33_19225 PF02126 Phosphotriesterase family BED33_19230 PF10941 BED33_19230 BED33_19235 PF10797 BED33_19235 BED33_19240 PF00543 Nitrogen regulatory protein P-II BED33_19245 PF00795 Carbon-nitrogen hydrolase BED33_19245 PF02540 NAD synthase BED33_19250 PF00072 Response regulator receiver domain BED33_19250 PF00158 Sigma-54 interaction domain BED33_19255 PF13942 BED33_19255 BED33_19260 PF00512 His Kinase A (phospho-acceptor) domain BED33_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_19270 PF02769 AIR synthase related protein, C-terminal domain BED33_19270 PF13507 CobB/CobQ-like glutamine amidotransferase domain BED33_19275 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED33_19275 PF01464 Transglycosylase SLT domain BED33_19280 PF14437 BED33_19280 BED33_19285 PF09925 BED33_19285 BED33_19290 PF12710 haloacid dehalogenase-like hydrolase BED33_19295 PF01380 SIS domain BED33_19300 PF01380 SIS domain BED33_19300 PF01418 Helix-turn-helix domain, rpiR family BED33_19305 PF12838 4Fe-4S dicluster domain BED33_19315 PF01648 4'-phosphopantetheinyl transferase superfamily BED33_19320 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BED33_19325 PF02565 Recombination protein O C terminal BED33_19325 PF11967 Recombination protein O N terminal BED33_19330 PF01926 50S ribosome-binding GTPase BED33_19330 PF07650 KH domain BED33_19335 PF00035 Double-stranded RNA binding motif BED33_19335 PF14622 Ribonuclease-III-like BED33_19340 PF00717 Peptidase S24-like BED33_19340 PF10502 Signal peptidase, peptidase S26 BED33_19345 PF00009 Elongation factor Tu GTP binding domain BED33_19345 PF00679 Elongation factor G C-terminus BED33_19345 PF03144 Elongation factor Tu domain 2 BED33_19345 PF06421 GTP-binding protein LepA C-terminus BED33_19355 PF04246 BED33_19355 BED33_19360 PF03888 MucB/RseB family BED33_19360 PF17188 BED33_19360 BED33_19365 PF03872 Anti sigma-E protein RseA, N-terminal domain BED33_19365 PF03873 Anti sigma-E protein RseA, C-terminal domain BED33_19370 PF04542 Sigma-70 region 2 BED33_19370 PF08281 Sigma-70, region 4 BED33_19375 PF00890 FAD binding domain BED33_19375 PF02910 Fumarate reductase flavoprotein C-term BED33_19380 PF05175 Methyltransferase small domain BED33_19385 PF00270 DEAD/DEAH box helicase BED33_19385 PF00271 Helicase conserved C-terminal domain BED33_19390 PF01548 BED33_19390 BED33_19390 PF02371 BED33_19390 BED33_19395 PF01548 BED33_19395 BED33_19395 PF02371 BED33_19395 BED33_19400 PF00023 Ankyrin repeat BED33_19400 PF12796 Ankyrin repeats (3 copies) BED33_19415 PF01228 Glycine radical BED33_19420 PF03167 Uracil DNA glycosylase superfamily BED33_19425 PF01025 GrpE BED33_19430 PF01513 ATP-NAD kinase BED33_19435 PF02463 RecF/RecN/SMC N terminal domain BED33_19440 PF04355 SmpA / OmlA family BED33_19445 PF03658 RnfH family Ubiquitin BED33_19450 PF03364 Polyketide cyclase / dehydrase and lipid transport BED33_19455 PF01668 SmpB protein BED33_19470 PF00916 BED33_19470 BED33_19470 PF01740 STAS domain BED33_19475 PF04794 YdjC-like protein BED33_19480 PF07883 Cupin domain BED33_19480 PF12833 Helix-turn-helix domain BED33_19485 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED33_19490 PF00232 Glycosyl hydrolase family 1 BED33_19495 PF02378 Phosphotransferase system, EIIC BED33_19500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED33_19510 PF01548 BED33_19510 BED33_19510 PF02371 BED33_19510 BED33_19515 PF00248 Aldo/keto reductase family BED33_19520 PF02537 BED33_19520 BED33_19525 PF02537 BED33_19525 BED33_19530 PF02254 TrkA-N domain BED33_19530 PF07885 Ion channel BED33_19535 PF06411 HdeA/HdeB family BED33_19540 PF03824 BED33_19540 BED33_19545 PF03253 Urea transporter BED33_19550 PF01774 UreD urease accessory protein BED33_19555 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED33_19560 PF01730 UreF BED33_19565 PF02814 UreE urease accessory protein, N-terminal domain BED33_19565 PF05194 UreE urease accessory protein, C-terminal domain BED33_19570 PF00449 Urease alpha-subunit, N-terminal domain BED33_19570 PF01979 Amidohydrolase family BED33_19575 PF00699 Urease beta subunit BED33_19580 PF00547 Urease, gamma subunit BED33_19585 PF00005 ABC transporter BED33_19590 PF00005 ABC transporter BED33_19595 PF00528 Binding-protein-dependent transport system inner membrane component BED33_19600 PF00528 Binding-protein-dependent transport system inner membrane component BED33_19605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_19620 PF00581 Rhodanese-like domain BED33_19630 PF12833 Helix-turn-helix domain BED33_19635 PF00313 'Cold-shock' DNA-binding domain BED33_19640 PF04899 BED33_19640 BED33_19650 PF09400 Protein of unknown function (DUF2002) BED33_19655 PF07690 Major Facilitator Superfamily BED33_19660 PF12833 Helix-turn-helix domain BED33_19665 PF03403 Platelet-activating factor acetylhydrolase, isoform II BED33_19670 PF06392 BED33_19670 BED33_19675 PF05957 BED33_19675 BED33_19685 PF02627 Carboxymuconolactone decarboxylase family BED33_19690 PF00462 Glutaredoxin BED33_19695 PF07972 NrdI Flavodoxin like BED33_19700 PF00317 Ribonucleotide reductase, all-alpha domain BED33_19700 PF02867 Ribonucleotide reductase, barrel domain BED33_19700 PF08343 Ribonucleotide reductase N-terminal BED33_19705 PF00268 Ribonucleotide reductase, small chain BED33_19710 PF00005 ABC transporter BED33_19710 PF00571 CBS domain BED33_19715 PF00528 Binding-protein-dependent transport system inner membrane component BED33_19720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED33_19730 PF00929 Exonuclease BED33_19735 PF00075 RNase H BED33_19740 PF08241 Methyltransferase domain BED33_19745 PF00753 Metallo-beta-lactamase superfamily BED33_19745 PF16123 BED33_19745 BED33_19750 PF01464 Transglycosylase SLT domain BED33_19750 PF01476 LysM domain BED33_19755 PF01548 BED33_19755 BED33_19755 PF02371 BED33_19755 BED33_19760 PF03372 Endonuclease/Exonuclease/phosphatase family BED33_19765 PF07690 Major Facilitator Superfamily BED33_19770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_19770 PF03466 LysR substrate binding domain BED33_19775 PF00248 Aldo/keto reductase family BED33_19785 PF00872 BED33_19785 BED33_19825 PF00005 ABC transporter BED33_19825 PF09383 NIL domain BED33_19830 PF00528 Binding-protein-dependent transport system inner membrane component BED33_19835 PF03180 NLPA lipoprotein BED33_19840 PF16358 BED33_19840 BED33_19845 PF01980 Uncharacterised protein family UPF0066 BED33_19850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED33_19850 PF03129 Anticodon binding domain BED33_19850 PF04073 Aminoacyl-tRNA editing domain BED33_19855 PF04170 NlpE N-terminal domain BED33_19855 PF17185 BED33_19855 BED33_19860 PF00472 RF-1 domain BED33_19865 PF07152 YaeQ protein BED33_19875 PF07073 Modulator of Rho-dependent transcription termination (ROF) BED33_19880 PF00034 Cytochrome c BED33_19885 PF01171 PP-loop family BED33_19885 PF09179 TilS substrate binding domain BED33_19885 PF11734 TilS substrate C-terminal domain BED33_19890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED33_19895 PF01276 Orn/Lys/Arg decarboxylase, major domain BED33_19895 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED33_19895 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED33_19900 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BED33_19905 PF01336 OB-fold nucleic acid binding domain BED33_19905 PF02811 PHP domain BED33_19905 PF07733 Bacterial DNA polymerase III alpha subunit BED33_19905 PF14579 Helix-hairpin-helix motif BED33_19910 PF01351 Ribonuclease HII BED33_19915 PF02684 BED33_19915 BED33_19925 PF07977 FabA-like domain BED33_19930 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_19930 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BED33_19935 PF03938 Outer membrane protein (OmpH-like) BED33_19940 PF01103 Surface antigen BED33_19940 PF07244 Surface antigen variable number repeat BED33_19945 PF02163 Peptidase family M50 BED33_19945 PF13180 PDZ domain BED33_19950 PF01148 Cytidylyltransferase family BED33_19955 PF01255 Putative undecaprenyl diphosphate synthase BED33_19960 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BED33_19960 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal BED33_19960 PF13288 DXP reductoisomerase C-terminal domain BED33_19965 PF01765 Ribosome recycling factor BED33_19970 PF00696 Amino acid kinase family BED33_19975 PF00889 Elongation factor TS BED33_19980 PF00318 Ribosomal protein S2 BED33_19990 PF01842 ACT domain BED33_19990 PF01909 Nucleotidyltransferase domain BED33_19990 PF01966 HD domain BED33_19990 PF08335 GlnD PII-uridylyltransferase BED33_19995 PF00132 Bacterial transferase hexapeptide (six repeats) BED33_19995 PF14602 Hexapeptide repeat of succinyl-transferase BED33_19995 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BED33_20000 PF11944 BED33_20000 BED33_20005 PF00258 Flavodoxin BED33_20010 PF00849 RNA pseudouridylate synthase BED33_20015 PF04287 tRNA pseudouridine synthase C BED33_20020 PF07348 Syd protein (SUKH-2) BED33_20025 PF14489 QueF-like protein BED33_20025 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BED33_20030 PF03641 Possible lysine decarboxylase BED33_20030 PF11892 Domain of unknown function (DUF3412) BED33_20030 PF14793 Domain of unknown function (DUF4478) BED33_20035 PF01367 5'-3' exonuclease, C-terminal SAM fold BED33_20035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED33_20040 PF01548 BED33_20040 BED33_20040 PF02371 BED33_20040 BED33_20045 PF01728 FtsJ-like methyltransferase BED33_20050 PF04241 BED33_20050 BED33_20055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_20055 PF03466 LysR substrate binding domain BED33_20060 PF06004 Bacterial protein of unknown function (DUF903) BED33_20065 PF00266 Aminotransferase class-V BED33_20070 PF02657 Fe-S metabolism associated domain BED33_20075 PF00899 ThiF family BED33_20080 PF03562 MltA specific insert domain BED33_20080 PF06725 3D domain BED33_20100 PF01520 N-acetylmuramoyl-L-alanine amidase BED33_20100 PF11741 AMIN domain BED33_20105 PF00583 Acetyltransferase (GNAT) family BED33_20105 PF00696 Amino acid kinase family BED33_20110 PF13538 UvrD-like helicase C-terminal domain BED33_20110 PF13604 AAA domain BED33_20115 PF00580 UvrD/REP helicase N-terminal domain BED33_20115 PF12705 PD-(D/E)XK nuclease superfamily BED33_20115 PF13361 UvrD-like helicase C-terminal domain BED33_20120 PF00675 Insulinase (Peptidase family M16) BED33_20120 PF05193 Peptidase M16 inactive domain BED33_20120 PF16187 BED33_20120 BED33_20125 PF04257 Exodeoxyribonuclease V, gamma subunit BED33_20130 PF12528 BED33_20130 BED33_20135 PF10713 BED33_20135 BED33_20140 PF07963 Prokaryotic N-terminal methylation motif BED33_20145 PF07963 Prokaryotic N-terminal methylation motif BED33_20150 PF00303 Thymidylate synthase BED33_20155 PF01790 BED33_20155 BED33_20160 PF00391 PEP-utilising enzyme, mobile domain BED33_20160 PF01590 GAF domain BED33_20160 PF02896 PEP-utilising enzyme, TIM barrel domain BED33_20160 PF05524 PEP-utilising enzyme, N-terminal BED33_20175 PF02976 DNA mismatch repair enzyme MutH BED33_20180 PF03741 BED33_20180 BED33_20185 PF00248 Aldo/keto reductase family BED33_20195 PF00501 AMP-binding enzyme BED33_20195 PF01553 Acyltransferase BED33_20195 PF13193 AMP-binding enzyme C-terminal domain BED33_20200 PF00384 Molybdopterin oxidoreductase BED33_20200 PF01568 Molydopterin dinucleotide binding domain BED33_20205 PF00356 Bacterial regulatory proteins, lacI family BED33_20205 PF13377 Periplasmic binding protein-like domain BED33_20210 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BED33_20210 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED33_20215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_20215 PF03466 LysR substrate binding domain BED33_20220 PF07690 Major Facilitator Superfamily BED33_20230 PF00753 Metallo-beta-lactamase superfamily BED33_20250 PF00486 Transcriptional regulatory protein, C terminal BED33_20255 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) BED33_20270 PF05134 Type II secretion system (T2SS), protein L BED33_20275 PF03934 Type II secretion system (T2SS), protein K BED33_20280 PF11612 Type II secretion system (T2SS), protein J BED33_20285 PF02501 Type II secretion system (T2SS), protein I BED33_20290 PF07963 Prokaryotic N-terminal methylation motif BED33_20290 PF08334 Type II secretion system (T2SS), protein G BED33_20300 PF00437 Type II/IV secretion system protein BED33_20305 PF00263 BED33_20305 BED33_20305 PF03958 Bacterial type II/III secretion system short domain BED33_20310 PF11356 Type IV pilus biogenesis BED33_20320 PF00484 Carbonic anhydrase BED33_20325 PF01638 HxlR-like helix-turn-helix BED33_20330 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_20335 PF13591 MerR HTH family regulatory protein BED33_20340 PF00226 DnaJ domain BED33_20340 PF01556 DnaJ C terminal domain BED33_20345 PF01548 BED33_20345 BED33_20345 PF02371 BED33_20345 BED33_20350 PF00990 GGDEF domain BED33_20350 PF08448 PAS fold BED33_20355 PF13474 SnoaL-like domain BED33_20360 PF02661 Fic/DOC family BED33_20365 PF05930 Prophage CP4-57 regulatory protein (AlpA) BED33_20370 PF00872 BED33_20370 BED33_20375 PF15731 BED33_20375 BED33_20380 PF15723 BED33_20380 BED33_20385 PF01381 Helix-turn-helix BED33_20390 PF05016 Plasmid stabilisation system protein BED33_20395 PF13358 DDE superfamily endonuclease BED33_20395 PF13384 Homeodomain-like domain BED33_20400 PF00589 Phage integrase family BED33_20400 PF02899 Phage integrase, N-terminal SAM-like domain BED33_20430 PF03864 Phage major capsid protein E BED33_20440 PF13358 DDE superfamily endonuclease BED33_20440 PF13384 Homeodomain-like domain BED33_20460 PF04851 Type III restriction enzyme, res subunit BED33_20475 PF00589 Phage integrase family BED33_20485 PF00152 tRNA synthetases class II (D, K and N) BED33_20485 PF01336 OB-fold nucleic acid binding domain BED33_20490 PF00472 RF-1 domain BED33_20490 PF03462 PCRF domain BED33_20495 PF01368 DHH family BED33_20495 PF02272 DHHA1 domain BED33_20500 PF10411 Disulfide bond isomerase protein N-terminus BED33_20500 PF13098 Thioredoxin-like domain BED33_20505 PF00589 Phage integrase family BED33_20505 PF02899 Phage integrase, N-terminal SAM-like domain BED33_20510 PF00258 Flavodoxin BED33_20515 PF06123 BED33_20515 BED33_20520 PF00512 His Kinase A (phospho-acceptor) domain BED33_20520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_20520 PF14827 Sensory domain of two-component sensor kinase BED33_20525 PF00072 Response regulator receiver domain BED33_20525 PF00486 Transcriptional regulatory protein, C terminal BED33_20530 PF07254 BED33_20530 BED33_20535 PF03937 Flavinator of succinate dehydrogenase BED33_20540 PF01571 Aminomethyltransferase folate-binding domain BED33_20545 PF01548 BED33_20545 BED33_20545 PF02371 BED33_20545 BED33_20550 PF03006 BED33_20550 BED33_20555 PF13023 HD domain BED33_20560 PF13561 Enoyl-(Acyl carrier protein) reductase BED33_20565 PF13924 BED33_20565 BED33_20570 PF02347 Glycine cleavage system P-protein BED33_20575 PF01597 Glycine cleavage H-protein BED33_20580 PF01571 Aminomethyltransferase folate-binding domain BED33_20580 PF08669 Glycine cleavage T-protein C-terminal barrel domain BED33_20585 PF01494 FAD binding domain BED33_20590 PF01494 FAD binding domain BED33_20595 PF00557 Metallopeptidase family M24 BED33_20595 PF05195 Aminopeptidase P, N-terminal domain BED33_20600 PF03695 Uncharacterised protein family (UPF0149) BED33_20605 PF05164 Cell division protein ZapA BED33_20615 PF01812 5-formyltetrahydrofolate cyclo-ligase family BED33_20620 PF00113 Enolase, C-terminal TIM barrel domain BED33_20620 PF03952 Enolase, N-terminal domain BED33_20625 PF00117 Glutamine amidotransferase class-I BED33_20625 PF06418 CTP synthase N-terminus BED33_20630 PF03819 MazG nucleotide pyrophosphohydrolase domain BED33_20635 PF02824 TGS domain BED33_20635 PF04607 Region found in RelA / SpoT proteins BED33_20635 PF13291 ACT domain BED33_20635 PF13328 HD domain BED33_20640 PF01938 TRAM domain BED33_20640 PF05958 tRNA (Uracil-5-)-methyltransferase BED33_20645 PF00072 Response regulator receiver domain BED33_20645 PF00512 His Kinase A (phospho-acceptor) domain BED33_20645 PF01627 Hpt domain BED33_20645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED33_20645 PF09984 BED33_20645 BED33_20650 PF00595 PDZ domain (Also known as DHR or GLGF) BED33_20650 PF13180 PDZ domain BED33_20650 PF13365 Trypsin-like peptidase domain BED33_20655 PF01966 HD domain BED33_20655 PF13286 Phosphohydrolase-associated domain BED33_20660 PF01048 Phosphorylase superfamily BED33_20665 PF01497 Periplasmic binding protein BED33_20670 PF03458 BED33_20670 BED33_20675 PF01521 Iron-sulphur cluster biosynthesis BED33_20680 PF00654 Voltage gated chloride channel BED33_20685 PF00202 Aminotransferase class-III BED33_20690 PF07690 Major Facilitator Superfamily BED33_20695 PF01032 FecCD transport family BED33_20700 PF01497 Periplasmic binding protein BED33_20705 PF00005 ABC transporter BED33_20710 PF00905 Penicillin binding protein transpeptidase domain BED33_20710 PF00912 Transglycosylase BED33_20710 PF14812 BED33_20710 BED33_20710 PF14814 Bifunctional transglycosylase second domain BED33_20715 PF00270 DEAD/DEAH box helicase BED33_20715 PF00271 Helicase conserved C-terminal domain BED33_20715 PF04408 Helicase associated domain (HA2) BED33_20715 PF08482 BED33_20715 BED33_20720 PF13563 2'-5' RNA ligase superfamily BED33_20725 PF03749 Sugar fermentation stimulation protein BED33_20730 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED33_20735 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED33_20740 PF01743 Poly A polymerase head domain BED33_20740 PF12626 Polymerase A arginine-rich C-terminus BED33_20740 PF12627 Probable RNA and SrmB- binding site of polymerase A BED33_20745 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BED33_20750 PF02548 Ketopantoate hydroxymethyltransferase BED33_20755 PF02569 Pantoate-beta-alanine ligase BED33_20760 PF02261 Aspartate decarboxylase BED33_20765 PF01522 Polysaccharide deacetylase BED33_20770 PF01061 BED33_20770 BED33_20775 PF00005 ABC transporter BED33_20780 PF00484 Carbonic anhydrase BED33_20785 PF00156 Phosphoribosyl transferase domain BED33_20790 PF00394 Multicopper oxidase BED33_20790 PF07731 Multicopper oxidase BED33_20790 PF07732 Multicopper oxidase BED33_20790 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED33_20795 PF09691 Bacterial chaperone lipoprotein (PulS_OutS) BED33_20800 PF01564 Spermine/spermidine synthase BED33_20800 PF17284 BED33_20800 BED33_20805 PF02675 S-adenosylmethionine decarboxylase BED33_20815 PF00892 EamA-like transporter family BED33_20820 PF06062 BED33_20820 BED33_20830 PF00593 TonB dependent receptor BED33_20830 PF07715 TonB-dependent Receptor Plug Domain BED33_20835 PF12833 Helix-turn-helix domain BED33_20845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED33_20845 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED33_20850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED33_20850 PF00364 Biotin-requiring enzyme BED33_20850 PF02817 e3 binding domain BED33_20855 PF00456 Transketolase, thiamine diphosphate binding domain BED33_20860 PF00392 Bacterial regulatory proteins, gntR family BED33_20860 PF07729 FCD domain BED33_20865 PF00324 Amino acid permease BED33_20870 PF17113 BED33_20870 BED33_20875 PF01510 N-acetylmuramoyl-L-alanine amidase BED33_20880 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BED33_20880 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BED33_20885 PF00114 Pilin (bacterial filament) BED33_20885 PF07963 Prokaryotic N-terminal methylation motif BED33_20890 PF00437 Type II/IV secretion system protein BED33_20890 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BED33_20895 PF00482 Type II secretion system (T2SS), protein F BED33_20900 PF00478 IMP dehydrogenase / GMP reductase domain BED33_20905 PF01121 Dephospho-CoA kinase BED33_20910 PF07072 Protein of unknown function (DUF1342) BED33_20915 PF03884 Domain of unknown function (DUF329) BED33_20920 PF00293 NUDIX domain BED33_20925 PF01043 SecA preprotein cross-linking domain BED33_20925 PF02810 SEC-C motif BED33_20925 PF07516 SecA Wing and Scaffold domain BED33_20925 PF07517 SecA DEAD-like domain BED33_20930 PF06558 BED33_20930 BED33_20935 PF05258 BED33_20935 BED33_20940 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BED33_20945 PF00091 Tubulin/FtsZ family, GTPase domain BED33_20945 PF12327 FtsZ family, C-terminal domain BED33_20950 PF02491 SHS2 domain inserted in FTSA BED33_20950 PF14450 Cell division protein FtsA BED33_20955 PF03799 Cell division protein FtsQ BED33_20955 PF08478 POTRA domain, FtsQ-type BED33_20960 PF01820 D-ala D-ala ligase N-terminus BED33_20960 PF07478 D-ala D-ala ligase C-terminus BED33_20965 PF01225 Mur ligase family, catalytic domain BED33_20965 PF02875 Mur ligase family, glutamate ligase domain BED33_20965 PF08245 Mur ligase middle domain BED33_20970 PF03033 Glycosyltransferase family 28 N-terminal domain BED33_20970 PF04101 Glycosyltransferase family 28 C-terminal domain BED33_20975 PF01098 BED33_20975 BED33_20980 PF02875 Mur ligase family, glutamate ligase domain BED33_20980 PF08245 Mur ligase middle domain BED33_20985 PF00953 Glycosyl transferase family 4 BED33_20985 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BED33_20990 PF01225 Mur ligase family, catalytic domain BED33_20990 PF02875 Mur ligase family, glutamate ligase domain BED33_20990 PF08245 Mur ligase middle domain BED33_20995 PF01225 Mur ligase family, catalytic domain BED33_20995 PF02875 Mur ligase family, glutamate ligase domain BED33_20995 PF08245 Mur ligase middle domain BED33_21000 PF00905 Penicillin binding protein transpeptidase domain BED33_21000 PF03717 Penicillin-binding Protein dimerisation domain BED33_21010 PF01795 MraW methylase family BED33_21015 PF02381 MraZ protein BED33_21020 PF06610 BED33_21020 BED33_21025 PF00356 Bacterial regulatory proteins, lacI family BED33_21025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED33_21030 PF01842 ACT domain BED33_21030 PF10369 Small subunit of acetolactate synthase BED33_21035 PF00205 Thiamine pyrophosphate enzyme, central domain BED33_21035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED33_21035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED33_21040 PF00501 AMP-binding enzyme BED33_21045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_21045 PF03466 LysR substrate binding domain BED33_21050 PF00682 HMGL-like BED33_21050 PF08502 LeuA allosteric (dimerisation) domain BED33_21055 PF00180 Isocitrate/isopropylmalate dehydrogenase BED33_21060 PF00330 Aconitase family (aconitate hydratase) BED33_21065 PF00694 Aconitase C-terminal domain BED33_21080 PF07690 Major Facilitator Superfamily BED33_21085 PF01228 Glycine radical BED33_21085 PF02901 Pyruvate formate lyase BED33_21095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED33_21095 PF12793 BED33_21095 BED33_21105 PF13988 BED33_21105 BED33_21110 PF01547 Bacterial extracellular solute-binding protein BED33_21115 PF00528 Binding-protein-dependent transport system inner membrane component BED33_21120 PF00005 ABC transporter BED33_21125 PF09335 BED33_21125 BED33_21130 PF00136 DNA polymerase family B BED33_21130 PF03104 DNA polymerase family B, exonuclease domain BED33_21135 PF00176 SNF2 family N-terminal domain BED33_21135 PF00271 Helicase conserved C-terminal domain BED33_21135 PF12137 RNA polymerase recycling family C-terminal BED33_21140 PF02369 Bacterial Ig-like domain (group 1) BED33_21140 PF09134 Invasin, domain 3 BED33_21140 PF11924 Protein of unknown function (DUF3442) BED33_21145 PF00849 RNA pseudouridylate synthase BED33_21150 PF00226 DnaJ domain BED33_21150 PF05099 Tellurite resistance protein TerB BED33_21155 PF03968 OstA-like protein BED33_21155 PF04453 Organic solvent tolerance protein BED33_21160 PF00639 PPIC-type PPIASE domain BED33_21160 PF09312 SurA N-terminal domain BED33_21165 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BED33_21170 PF00398 Ribosomal RNA adenine dimethylase BED33_21175 PF04379 Protein of unknown function (DUF525) BED33_21180 PF00149 Calcineurin-like phosphoesterase BED33_21185 PF00186 Dihydrofolate reductase BED33_21190 PF12821 BED33_21190 BED33_21195 PF06738 BED33_21195 BED33_21200 PF01810 BED33_21200 BED33_21205 PF02142 MGS-like domain BED33_21205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED33_21205 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED33_21210 PF00117 Glutamine amidotransferase class-I BED33_21210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BED33_21215 PF01113 Dihydrodipicolinate reductase, N-terminus BED33_21215 PF05173 Dihydrodipicolinate reductase, C-terminus BED33_21220 PF02401 LytB protein BED33_21225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED33_21230 PF01252 BED33_21230 BED33_21235 PF00133 tRNA synthetases class I (I, L, M and V) BED33_21235 PF06827 Zinc finger found in FPG and IleRS BED33_21235 PF08264 Anticodon-binding domain of tRNA BED33_21240 PF01687 Riboflavin kinase BED33_21240 PF06574 FAD synthetase BED33_21250 PF01649 Ribosomal protein S20 BED33_21255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_21255 PF03466 LysR substrate binding domain BED33_21260 PF06965 Na+/H+ antiporter 1 BED33_21265 PF00226 DnaJ domain BED33_21265 PF00684 DnaJ central domain BED33_21265 PF01556 DnaJ C terminal domain BED33_21270 PF00012 Hsp70 protein BED33_21275 PF01184 BED33_21275 BED33_21280 PF03995 Peptidase inhibitor family I36 BED33_21285 PF07690 Major Facilitator Superfamily BED33_21290 PF00994 Probable molybdopterin binding domain BED33_21295 PF00923 Transaldolase BED33_21300 PF03883 BED33_21300 BED33_21305 PF01548 BED33_21305 BED33_21305 PF02371 BED33_21305 BED33_21310 PF00291 Pyridoxal-phosphate dependent enzyme BED33_21310 PF14821 Threonine synthase N terminus BED33_21315 PF00288 GHMP kinases N terminal domain BED33_21315 PF08544 GHMP kinases C terminal BED33_21320 PF00696 Amino acid kinase family BED33_21320 PF00742 Homoserine dehydrogenase BED33_21320 PF01842 ACT domain BED33_21320 PF03447 Homoserine dehydrogenase, NAD binding domain BED33_21320 PF13840 ACT domain BED33_21330 PF00072 Response regulator receiver domain BED33_21330 PF00486 Transcriptional regulatory protein, C terminal BED33_21335 PF05981 BED33_21335 BED33_21340 PF06445 GyrI-like small molecule binding domain BED33_21340 PF12833 Helix-turn-helix domain BED33_21345 PF00300 Histidine phosphatase superfamily (branch 1) BED33_21355 PF01371 Trp repressor protein BED33_21360 PF01464 Transglycosylase SLT domain BED33_21360 PF14718 Soluble lytic murein transglycosylase L domain BED33_21365 PF00122 E1-E2 ATPase BED33_21365 PF00689 Cation transporting ATPase, C-terminus BED33_21365 PF00690 Cation transporter/ATPase, N-terminus BED33_21365 PF00702 haloacid dehalogenase-like hydrolase BED33_21370 PF13689 BED33_21370 BED33_21375 PF00990 GGDEF domain BED33_21375 PF17152 BED33_21375 BED33_21380 PF00691 OmpA family BED33_21385 PF00005 ABC transporter BED33_21385 PF12848 ABC transporter BED33_21390 PF02661 Fic/DOC family BED33_21390 PF13776 BED33_21390 BED33_21395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED33_21395 PF03466 LysR substrate binding domain BED33_21400 PF08240 Alcohol dehydrogenase GroES-like domain BED33_21400 PF13602 Zinc-binding dehydrogenase BED33_21415 PF12710 haloacid dehalogenase-like hydrolase BED33_21420 PF10144 BED33_21420 BED33_21425 PF01048 Phosphorylase superfamily BED33_21430 PF01676 Metalloenzyme superfamily BED33_21435 PF00591 Glycosyl transferase family, a/b domain BED33_21435 PF02885 Glycosyl transferase family, helical bundle domain BED33_21435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BED33_21440 PF01791 DeoC/LacD family aldolase BED33_21445 PF01773 Na+ dependent nucleoside transporter N-terminus BED33_21445 PF07662 Na+ dependent nucleoside transporter C-terminus BED33_21445 PF07670 Nucleoside recognition BED33_21450 PF01026 TatD related DNase BED33_21455 PF01734 Patatin-like phospholipase BED33_21460 PF07043 BED33_21460 BED33_21465 PF04972 BON domain BED33_21470 PF00009 Elongation factor Tu GTP binding domain BED33_21470 PF03144 Elongation factor Tu domain 2 BED33_21470 PF16658 BED33_21470 BED33_21475 PF00583 Acetyltransferase (GNAT) family BED33_21480 PF03603 DNA polymerase III psi subunit BED33_21485 PF05175 Methyltransferase small domain BED33_21485 PF08468 Methyltransferase small domain N-terminal BED33_21505 PF07256 BED33_21505 BED33_21510 PF00990 GGDEF domain BED33_21515 PF00593 TonB dependent receptor BED33_21515 PF07715 TonB-dependent Receptor Plug Domain BED33_21520 PF01497 Periplasmic binding protein BED33_21525 PF00294 pfkB family carbohydrate kinase BED33_21530 PF02264 LamB porin BED33_21530 PF11471 BED33_21530 BED33_21535 PF00367 phosphotransferase system, EIIB BED33_21535 PF02378 Phosphotransferase system, EIIC BED33_21545 PF00356 Bacterial regulatory proteins, lacI family BED33_21545 PF13377 Periplasmic binding protein-like domain BED33_21550 PF00158 Sigma-54 interaction domain BED33_21550 PF00989 PAS fold BED33_21550 PF02954 Bacterial regulatory protein, Fis family BED33_21555 PF01095 Pectinesterase BED33_21560 PF10014 2OG-Fe dioxygenase BED33_21580 PF13358 DDE superfamily endonuclease BED33_21580 PF13384 Homeodomain-like domain BED33_21585 PF02543 Carbamoyltransferase BED33_21585 PF16861 BED33_21585 BED33_21590 PF00534 Glycosyl transferases group 1 BED33_21600 PF02734 DAK2 domain BED33_21605 PF02733 Dak1 domain BED33_21610 PF00465 Iron-containing alcohol dehydrogenase BED33_21615 PF00873 AcrB/AcrD/AcrF family BED33_21620 PF16576 BED33_21620 BED33_21625 PF02274 Amidinotransferase BED33_21635 PF04932 BED33_21635 BED33_21640 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED33_21645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED33_21645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED33_21650 PF04198 Putative sugar-binding domain BED33_21655 PF00005 ABC transporter BED33_21660 PF02653 BED33_21660 BED33_21665 PF02653 BED33_21665 BED33_21670 PF13407 Periplasmic binding protein domain BED33_21675 PF01791 DeoC/LacD family aldolase BED33_21680 PF03992 Antibiotic biosynthesis monooxygenase BED33_21690 PF10696 BED33_21690 BED33_21695 PF00872 BED33_21695 BED33_21700 PF06551 BED33_21700 BED33_21705 PF01527 Transposase BED33_21710 PF05932 Tir chaperone protein (CesT) family BED33_21715 PF00102 Protein-tyrosine phosphatase BED33_21715 PF09013 YopH, N-terminal BED33_21720 PF09013 YopH, N-terminal BED33_21725 PF02108 BED33_21725 BED33_21730 PF06578 BED33_21730 BED33_21735 PF01514 Secretory protein of YscJ/FliF family BED33_21740 PF17001 BED33_21740 BED33_21745 PF09025 YopR Core BED33_21750 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) BED33_21755 PF09392 Type III secretion needle MxiH like BED33_21760 PF08988 Protein of unknown function (DUF1895) BED33_21765 PF16693 BED33_21765 BED33_21770 PF00263 BED33_21770 BED33_21770 PF03958 Bacterial type II/III secretion system short domain BED33_21775 PF05932 Tir chaperone protein (CesT) family BED33_21780 PF17551 BED33_21780 BED33_21785 PF12833 Helix-turn-helix domain BED33_21790 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED33_21795 PF01312 FlhB HrpN YscU SpaS Family BED33_21800 PF01311 BED33_21800 BED33_21805 PF01313 BED33_21805 BED33_21815 PF01052 Surface presentation of antigens (SPOA) BED33_21830 PF07321 Type III secretion protein YscO BED33_21840 PF07201 HrpJ-like domain BED33_21845 PF09059 TyeA BED33_21855 PF09474 BED33_21855 BED33_21865 PF00771 FHIPEP family BED33_21870 PF09621 BED33_21870 BED33_21875 PF07216 BED33_21875 BED33_21880 PF04792 V antigen (LcrV) protein BED33_21885 PF07720 Tetratricopeptide repeat BED33_21890 PF04888 BED33_21890 BED33_21895 PF05844 YopD protein BED33_21900 PF00872 BED33_21900 BED33_21910 PF12468 Type III secretion system leucine rich repeat protein BED33_21925 PF00665 Integrase core domain BED33_21925 PF13276 BED33_21925 BED33_21930 PF05932 Tir chaperone protein (CesT) family BED33_21935 PF03543 Yersinia/Haemophilus virulence surface antigen BED33_21950 PF05818 BED33_21950 BED33_21955 PF03421 BED33_21955 BED33_21975 PF01527 Transposase BED33_21980 PF00665 Integrase core domain BED33_21985 PF01526 BED33_21985 BED33_22005 PF02387 BED33_22005 BED33_22010 PF10723 Replication regulatory protein RepB BED33_22015 PF13091 PLD-like domain BED33_22020 PF00665 Integrase core domain BED33_22020 PF13276 BED33_22020 BED33_22025 PF07057 DNA helicase TraI BED33_22040 PF03358 NADPH-dependent FMN reductase BED33_22045 PF01022 Bacterial regulatory protein, arsR family BED33_22050 PF02040 BED33_22050 BED33_22055 PF03960 ArsC family BED33_22060 PF00239 Resolvase, N terminal domain BED33_22060 PF02796 Helix-turn-helix domain of resolvase BED33_22065 PF01526 BED33_22065 BED33_22065 PF13700 BED33_22065 BED33_22070 PF00196 Bacterial regulatory proteins, luxR family BED33_22075 PF00892 EamA-like transporter family BED33_22080 PF03895 YadA-like C-terminal region BED33_22095 PF00665 Integrase core domain BED33_22105 PF09013 YopH, N-terminal BED33_22110 PF13683 BED33_22110 BED33_22115 PF00665 Integrase core domain BED33_22115 PF13276 BED33_22115 BED33_22135 PF00376 MerR family regulatory protein BED33_22135 PF13614 AAA domain BED33_22140 PF02195 ParB-like nuclease domain BED33_22145 PF03693 Uncharacterised protein family (UPF0156) BED33_22150 PF05016 Plasmid stabilisation system protein BED33_22155 PF03545 Yersinia virulence determinant (YopE) BED33_22155 PF09020 YopE, N terminal BED33_22160 PF05932 Tir chaperone protein (CesT) family BED33_22175 PF05932 Tir chaperone protein (CesT) family BED33_22180 PF00102 Protein-tyrosine phosphatase BED33_22180 PF09013 YopH, N-terminal BED33_22185 PF09013 YopH, N-terminal BED33_22190 PF02108 BED33_22190 BED33_22195 PF06578 BED33_22195 BED33_22200 PF01514 Secretory protein of YscJ/FliF family BED33_22205 PF17001 BED33_22205 BED33_22210 PF09025 YopR Core BED33_22215 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) BED33_22220 PF09392 Type III secretion needle MxiH like BED33_22225 PF08988 Protein of unknown function (DUF1895) BED33_22230 PF16693 BED33_22230 BED33_22235 PF00263 BED33_22235 BED33_22235 PF03958 Bacterial type II/III secretion system short domain BED33_22240 PF05932 Tir chaperone protein (CesT) family BED33_22245 PF12833 Helix-turn-helix domain BED33_22250 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED33_22255 PF01312 FlhB HrpN YscU SpaS Family BED33_22260 PF01311 BED33_22260 BED33_22265 PF01313 BED33_22265 BED33_22270 PF00813 BED33_22270 BED33_22275 PF01052 Surface presentation of antigens (SPOA) BED33_22290 PF07321 Type III secretion protein YscO BED33_22295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED33_22295 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED33_22300 PF07201 HrpJ-like domain BED33_22305 PF09059 TyeA BED33_22315 PF09474 BED33_22315 BED33_22325 PF00771 FHIPEP family BED33_22355 PF07916 BED33_22355 BED33_22360 PF13166 BED33_22360 BED33_22365 PF13166 BED33_22365 BED33_22375 PF00589 Phage integrase family BED33_22380 PF00239 Resolvase, N terminal domain BED33_22385 PF03212 Pertactin BED33_22385 PF03797 Autotransporter beta-domain BED33_22385 PF16168 BED33_22385 BED33_22390 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED33_22390 PF08479 POTRA domain, ShlB-type BED33_22390 PF17287 BED33_22390 BED33_22395 PF05860 haemagglutination activity domain BED33_22395 PF13018 BED33_22395 BED33_22420 PF13936 Helix-turn-helix domain BED33_22425 PF09140 ATPase MipZ BED33_22445 PF01527 Transposase BED33_22450 PF05593 BED33_22450 BED33_22470 PF07180 Protein of unknown function (DUF1401) BED33_22515 PF07180 Protein of unknown function (DUF1401) BED33_22530 PF09134 Invasin, domain 3 BED33_22530 PF11924 Protein of unknown function (DUF3442) BED33_22540 PF07876 Stress responsive A/B Barrel Domain BED33_22555 PF13643 BED33_22555 BED33_22560 PF00589 Phage integrase family BED33_22570 PF00816 H-NS histone family BED33_22580 PF01464 Transglycosylase SLT domain BED33_22595 PF04471 Restriction endonuclease BED33_22600 PF08751 TrwC relaxase BED33_22600 PF13604 AAA domain BED33_22605 PF10412 Type IV secretion-system coupling protein DNA-binding domain BED33_22625 PF01381 Helix-turn-helix BED33_22630 PF05973 BED33_22630 BED33_22705 PF08535 KorB domain BED33_22710 PF13614 AAA domain BED33_22715 PF04986 BED33_22715 BED33_22715 PF14319 BED33_22715 BED33_22750 PF10411 Disulfide bond isomerase protein N-terminus BED33_22750 PF13098 Thioredoxin-like domain BED33_22765 PF05309 BED33_22765 BED33_22770 PF06586 BED33_22770 BED33_22775 PF03743 Bacterial conjugation TrbI-like protein BED33_22780 PF09676 BED33_22780 BED33_22785 PF01935 Domain of unknown function DUF87 BED33_22785 PF11130 BED33_22785 BED33_22795 PF06986 BED33_22795 BED33_22800 PF06834 BED33_22800 BED33_22805 PF09673 BED33_22805 BED33_22810 PF10502 Signal peptidase, peptidase S26 BED33_22815 PF08308 BED33_22815 BED33_22820 PF13728 F plasmid transfer operon protein BED33_22825 PF06122 BED33_22825 BED33_22830 PF07916 BED33_22830 BED33_22830 PF13166 BED33_22830 BED33_22840 PF00589 Phage integrase family BED33_22845 PF00239 Resolvase, N terminal domain BED33_22850 PF03212 Pertactin BED33_22850 PF03797 Autotransporter beta-domain BED33_22850 PF16168 BED33_22850 BED33_22860 PF13018 BED33_22860