BED33_00050 SM01120 BED33_00050 BED33_00105 SM00382 ATPases associated with a variety of cellular activities BED33_00125 SM01133 BED33_00125 BED33_00235 SM00382 ATPases associated with a variety of cellular activities BED33_00240 SM00382 ATPases associated with a variety of cellular activities BED33_00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_00270 SM00866 BED33_00270 BED33_00295 SM00382 ATPases associated with a variety of cellular activities BED33_00300 SM00382 ATPases associated with a variety of cellular activities BED33_00345 SM00382 ATPases associated with a variety of cellular activities BED33_00435 SM00487 DEAD-like helicases superfamily BED33_00435 SM00490 helicase superfamily c-terminal domain BED33_00440 SM00028 Tetratricopeptide repeats BED33_00445 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_00445 SM00322 K homology RNA-binding domain BED33_00450 SM01387 BED33_00450 BED33_00465 SM00173 Ras subfamily of RAS small GTPases BED33_00470 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_00470 SM00322 K homology RNA-binding domain BED33_00505 SM00382 ATPases associated with a variety of cellular activities BED33_00515 SM01103 BED33_00515 BED33_00530 SM00448 cheY-homologous receiver domain BED33_00530 SM00862 Transcriptional regulatory protein, C terminal BED33_00535 SM00387 Histidine kinase-like ATPases BED33_00535 SM00388 His Kinase A (phosphoacceptor) domain BED33_00600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_00600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_00630 SM01091 Transporter associated domain BED33_00720 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED33_00725 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_00725 SM00357 Cold shock protein domain BED33_00725 SM00955 BED33_00725 BED33_00735 SM00788 Adenylosuccinate synthetase BED33_00745 SM00244 prohibitin homologues BED33_00750 SM00244 prohibitin homologues BED33_00770 SM00853 MutL C terminal dimerisation domain BED33_00770 SM01340 BED33_00770 BED33_00775 SM00257 Lysin motif BED33_00775 SM00646 BED33_00775 BED33_00805 SM00479 BED33_00805 BED33_00865 SM00841 Elongation factor P, C-terminal BED33_00865 SM01185 BED33_00865 BED33_00890 SM00883 Chaperonin 10 Kd subunit BED33_00955 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_00995 SM00382 ATPases associated with a variety of cellular activities BED33_01035 SM00382 ATPases associated with a variety of cellular activities BED33_01040 SM00965 Secretin and TonB N terminus short domain BED33_01155 SM00342 helix_turn_helix, arabinose operon control protein BED33_01225 SM00421 helix_turn_helix, Lux Regulon BED33_01225 SM00448 cheY-homologous receiver domain BED33_01290 SM00798 AICARFT/IMPCHase bienzyme BED33_01290 SM00851 MGS-like domain BED33_01295 SM01209 BED33_01295 BED33_01295 SM01210 BED33_01295 BED33_01305 SM00411 bacterial (prokaryotic) histone like domain BED33_01360 SM00876 Biotin and Thiamin Synthesis associated domain BED33_01370 SM00663 RNA polymerase I subunit A N-terminus BED33_01395 SM00649 Ribosomal protein L11/L12 BED33_01400 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED33_01400 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED33_01530 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED33_01535 SM01004 Delta-aminolevulinic acid dehydratase BED33_01630 SM00382 ATPases associated with a variety of cellular activities BED33_01680 SM00382 ATPases associated with a variety of cellular activities BED33_01685 SM00382 ATPases associated with a variety of cellular activities BED33_01730 SM00382 ATPases associated with a variety of cellular activities BED33_01735 SM00382 ATPases associated with a variety of cellular activities BED33_01735 SM00962 SRP54-type protein, GTPase domain BED33_01735 SM00963 SRP54-type protein, helical bundle domain BED33_01830 SM00341 Helicase and RNase D C-terminal BED33_01830 SM00487 DEAD-like helicases superfamily BED33_01830 SM00490 helicase superfamily c-terminal domain BED33_01830 SM00956 BED33_01830 BED33_01900 SM01219 BED33_01900 BED33_02005 SM00984 UDP binding domain BED33_02030 SM00357 Cold shock protein domain BED33_02030 SM00382 ATPases associated with a variety of cellular activities BED33_02030 SM00959 Rho termination factor, N-terminal domain BED33_02040 SM00487 DEAD-like helicases superfamily BED33_02040 SM00490 helicase superfamily c-terminal domain BED33_02050 SM00060 Fibronectin type 3 domain BED33_02095 SM00778 Zinc-binding domain of primase-helicase BED33_02095 SM00885 D5 N terminal like BED33_02130 SM00342 helix_turn_helix, arabinose operon control protein BED33_02140 SM00382 ATPases associated with a variety of cellular activities BED33_02170 SM00342 helix_turn_helix, arabinose operon control protein BED33_02215 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED33_02230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_02230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_02230 SM01358 BED33_02230 BED33_02245 SM00966 SpoVT / AbrB like domain BED33_02255 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_02335 SM00642 Alpha-amylase domain BED33_02415 SM00448 cheY-homologous receiver domain BED33_02415 SM00862 Transcriptional regulatory protein, C terminal BED33_02420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_02420 SM00387 Histidine kinase-like ATPases BED33_02420 SM00388 His Kinase A (phosphoacceptor) domain BED33_02425 SM00342 helix_turn_helix, arabinose operon control protein BED33_02435 SM00971 Serine acetyltransferase, N-terminal BED33_02455 SM00450 Rhodanese Homology Domain BED33_02485 SM00829 Enoylreductase BED33_02525 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BED33_02525 SM01232 BED33_02525 BED33_02625 SM00778 Zinc-binding domain of primase-helicase BED33_02665 SM00849 Metallo-beta-lactamase superfamily BED33_02675 SM00052 Putative diguanylate phosphodiesterase BED33_02675 SM00091 PAS domain BED33_02675 SM00267 diguanylate cyclase BED33_02710 SM00072 Guanylate kinase homologues. BED33_02715 SM01409 BED33_02715 BED33_02720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_02720 SM00954 Region found in RelA / SpoT proteins BED33_02730 SM00487 DEAD-like helicases superfamily BED33_02730 SM00490 helicase superfamily c-terminal domain BED33_02750 SM00421 helix_turn_helix, Lux Regulon BED33_02755 SM00421 helix_turn_helix, Lux Regulon BED33_02790 SM01230 BED33_02790 BED33_02800 SM00091 PAS domain BED33_02800 SM00387 Histidine kinase-like ATPases BED33_02800 SM00388 His Kinase A (phosphoacceptor) domain BED33_02805 SM00382 ATPases associated with a variety of cellular activities BED33_02805 SM00448 cheY-homologous receiver domain BED33_02810 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_02825 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED33_02825 SM00474 3'-5' exonuclease BED33_02825 SM00475 5'-3' exonuclease BED33_02825 SM00482 DNA polymerase A domain BED33_02885 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_02885 SM00895 BED33_02885 BED33_02895 SM00354 helix_turn _helix lactose operon repressor BED33_02915 SM00382 ATPases associated with a variety of cellular activities BED33_02930 SM00382 ATPases associated with a variety of cellular activities BED33_02935 SM00327 von Willebrand factor (vWF) type A domain BED33_02950 SM00344 helix_turn_helix ASNC type BED33_02960 SM01228 BED33_02960 BED33_03005 SM00382 ATPases associated with a variety of cellular activities BED33_03040 SM00382 ATPases associated with a variety of cellular activities BED33_03055 SM00062 Bacterial periplasmic substrate-binding proteins BED33_03085 SM00421 helix_turn_helix, Lux Regulon BED33_03085 SM00448 cheY-homologous receiver domain BED33_03090 SM00387 Histidine kinase-like ATPases BED33_03090 SM00388 His Kinase A (phosphoacceptor) domain BED33_03100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_03100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_03110 SM00382 ATPases associated with a variety of cellular activities BED33_03110 SM00930 BED33_03110 BED33_03135 SM01234 BED33_03135 BED33_03150 SM00382 ATPases associated with a variety of cellular activities BED33_03150 SM00760 Bacterial dnaA protein helix-turn-helix domain BED33_03155 SM00480 DNA polymerase III beta subunit BED33_03165 SM00387 Histidine kinase-like ATPases BED33_03165 SM00433 TopoisomeraseII BED33_03245 SM00382 ATPases associated with a variety of cellular activities BED33_03245 SM01086 C-terminal, D2-small domain, of ClpB protein BED33_03260 SM00354 helix_turn _helix lactose operon repressor BED33_03265 SM00487 DEAD-like helicases superfamily BED33_03265 SM00490 helicase superfamily c-terminal domain BED33_03305 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED33_03345 SM00382 ATPases associated with a variety of cellular activities BED33_03450 SM00382 ATPases associated with a variety of cellular activities BED33_03475 SM00382 ATPases associated with a variety of cellular activities BED33_03580 SM00354 helix_turn _helix lactose operon repressor BED33_03615 SM00912 haemagglutination activity domain BED33_03630 SM00912 haemagglutination activity domain BED33_03645 SM00387 Histidine kinase-like ATPases BED33_03650 SM00421 helix_turn_helix, Lux Regulon BED33_03650 SM00448 cheY-homologous receiver domain BED33_03685 SM00382 ATPases associated with a variety of cellular activities BED33_03690 SM00382 ATPases associated with a variety of cellular activities BED33_03735 SM00028 Tetratricopeptide repeats BED33_03745 SM00052 Putative diguanylate phosphodiesterase BED33_03785 SM00052 Putative diguanylate phosphodiesterase BED33_03805 SM00869 Autotransporter beta-domain BED33_03835 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED33_03875 SM00382 ATPases associated with a variety of cellular activities BED33_03905 SM00382 ATPases associated with a variety of cellular activities BED33_03915 SM00954 Region found in RelA / SpoT proteins BED33_04050 SM00354 helix_turn _helix lactose operon repressor BED33_04070 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED33_04095 SM00642 Alpha-amylase domain BED33_04100 SM00642 Alpha-amylase domain BED33_04135 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_04135 SM01134 BED33_04135 BED33_04145 SM00450 Rhodanese Homology Domain BED33_04155 SM00421 helix_turn_helix, Lux Regulon BED33_04205 SM00899 BED33_04205 BED33_04210 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_04210 SM00732 Likely ribonuclease with RNase H fold. BED33_04240 SM00448 cheY-homologous receiver domain BED33_04240 SM00862 Transcriptional regulatory protein, C terminal BED33_04245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_04245 SM00387 Histidine kinase-like ATPases BED33_04245 SM00388 His Kinase A (phosphoacceptor) domain BED33_04260 SM00363 S4 RNA-binding domain BED33_04375 SM00354 helix_turn _helix lactose operon repressor BED33_04390 SM00382 ATPases associated with a variety of cellular activities BED33_04410 SM00100 Cyclic nucleotide-monophosphate binding domain BED33_04410 SM00419 helix_turn_helix, cAMP Regulatory protein BED33_04445 SM00062 Bacterial periplasmic substrate-binding proteins BED33_04475 SM00382 ATPases associated with a variety of cellular activities BED33_04540 SM00838 Elongation factor G C-terminus BED33_04540 SM00889 Elongation factor G, domain IV BED33_04560 SM01403 BED33_04560 BED33_04580 SM01382 BED33_04580 BED33_04580 SM01383 BED33_04580 BED33_04595 SM00322 K homology RNA-binding domain BED33_04615 SM01374 BED33_04615 BED33_04620 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED33_04685 SM00363 S4 RNA-binding domain BED33_04685 SM01390 BED33_04685 BED33_04690 SM00662 RNA polymerases D BED33_04705 SM00422 helix_turn_helix, mercury resistance BED33_04825 SM00346 helix_turn_helix isocitrate lyase regulation BED33_04830 SM01018 B12 binding domain BED33_04835 SM00912 haemagglutination activity domain BED33_04885 SM00382 ATPases associated with a variety of cellular activities BED33_04915 SM00563 Phosphate acyltransferases BED33_04960 SM00829 Enoylreductase BED33_04965 SM00382 ATPases associated with a variety of cellular activities BED33_05000 SM00530 Helix-turn-helix XRE-family like proteins BED33_05035 SM00382 ATPases associated with a variety of cellular activities BED33_05050 SM00062 Bacterial periplasmic substrate-binding proteins BED33_05075 SM00357 Cold shock protein domain BED33_05080 SM00357 Cold shock protein domain BED33_05120 SM00878 Biotin carboxylase C-terminal domain BED33_05145 SM00829 Enoylreductase BED33_05150 SM00052 Putative diguanylate phosphodiesterase BED33_05150 SM00267 diguanylate cyclase BED33_05175 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_05530 SM00530 Helix-turn-helix XRE-family like proteins BED33_05545 SM00354 helix_turn _helix lactose operon repressor BED33_05555 SM00642 Alpha-amylase domain BED33_05565 SM00460 Transglutaminase/protease-like homologues BED33_05620 SM00382 ATPases associated with a variety of cellular activities BED33_05650 SM00382 ATPases associated with a variety of cellular activities BED33_05685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED33_05690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED33_05745 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_05750 SM00073 Histidine Phosphotransfer domain BED33_05750 SM00091 PAS domain BED33_05750 SM00387 Histidine kinase-like ATPases BED33_05750 SM00388 His Kinase A (phosphoacceptor) domain BED33_05750 SM00448 cheY-homologous receiver domain BED33_05765 SM00749 bacterial OsmY and nodulation domain BED33_05805 SM00857 Resolvase, N terminal domain BED33_05825 SM00530 Helix-turn-helix XRE-family like proteins BED33_05865 SM00829 Enoylreductase BED33_05925 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_05925 SM00895 BED33_05925 BED33_05945 SM00858 BED33_05945 BED33_05980 SM00869 Autotransporter beta-domain BED33_05990 SM00869 Autotransporter beta-domain BED33_06095 SM00400 zinc finger BED33_06095 SM00493 BED33_06095 BED33_06095 SM00766 DNA primase DnaG DnaB-binding BED33_06110 SM01207 BED33_06110 BED33_06115 SM00905 Dihydroneopterin aldolase BED33_06125 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_06130 SM00287 Bacterial SH3 domain homologues BED33_06135 SM01118 BED33_06135 BED33_06210 SM00387 Histidine kinase-like ATPases BED33_06210 SM00433 TopoisomeraseII BED33_06230 SM00434 DNA Topoisomerase IV BED33_06235 SM00563 Phosphate acyltransferases BED33_06245 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_06260 SM00342 helix_turn_helix, arabinose operon control protein BED33_06385 SM00342 helix_turn_helix, arabinose operon control protein BED33_06410 SM00382 ATPases associated with a variety of cellular activities BED33_06445 SM00382 ATPases associated with a variety of cellular activities BED33_06475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_06520 SM00382 ATPases associated with a variety of cellular activities BED33_06545 SM00382 ATPases associated with a variety of cellular activities BED33_06565 SM00858 BED33_06565 BED33_06770 SM00052 Putative diguanylate phosphodiesterase BED33_06770 SM00091 PAS domain BED33_06770 SM00267 diguanylate cyclase BED33_06815 SM00354 helix_turn _helix lactose operon repressor BED33_06830 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_06985 SM00478 endonuclease III BED33_06985 SM00525 BED33_06985 BED33_07010 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_07020 SM01152 BED33_07020 BED33_07055 SM00732 Likely ribonuclease with RNase H fold. BED33_07080 SM00731 SprT homologues. BED33_07085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED33_07125 SM00861 Transketolase, pyrimidine binding domain BED33_07130 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED33_07145 SM00194 Protein tyrosine phosphatase, catalytic domain BED33_07145 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED33_07325 SM00257 Lysin motif BED33_07335 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BED33_07335 SM00534 ATPase domain of DNA mismatch repair MUTS family BED33_07405 SM00382 ATPases associated with a variety of cellular activities BED33_07415 SM00382 ATPases associated with a variety of cellular activities BED33_07425 SM00825 Beta-ketoacyl synthase BED33_07440 SM00822 BED33_07440 BED33_07450 SM01235 BED33_07450 BED33_07460 SM00838 Elongation factor G C-terminus BED33_07460 SM00889 Elongation factor G, domain IV BED33_07465 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED33_07505 SM01012 BED33_07505 BED33_07520 SM00382 ATPases associated with a variety of cellular activities BED33_07550 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED33_07585 SM00382 ATPases associated with a variety of cellular activities BED33_07595 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED33_07640 SM01091 Transporter associated domain BED33_07660 SM00382 ATPases associated with a variety of cellular activities BED33_07660 SM00962 SRP54-type protein, GTPase domain BED33_07660 SM00963 SRP54-type protein, helical bundle domain BED33_07695 SM00448 cheY-homologous receiver domain BED33_07695 SM00850 LytTr DNA-binding domain BED33_07705 SM00830 Chorismate mutase type II BED33_07710 SM00830 Chorismate mutase type II BED33_07720 SM00382 ATPases associated with a variety of cellular activities BED33_07720 SM01086 C-terminal, D2-small domain, of ClpB protein BED33_07730 SM00363 S4 RNA-binding domain BED33_07790 SM00155 Phospholipase D. Active site motifs. BED33_07795 SM00881 CoA binding domain BED33_07800 SM01144 BED33_07800 BED33_07810 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED33_07830 SM00347 helix_turn_helix multiple antibiotic resistance protein BED33_07875 SM00062 Bacterial periplasmic substrate-binding proteins BED33_07890 SM00382 ATPases associated with a variety of cellular activities BED33_08025 SM00530 Helix-turn-helix XRE-family like proteins BED33_08050 SM00382 ATPases associated with a variety of cellular activities BED33_08285 SM01007 Class II Aldolase and Adducin N-terminal domain BED33_08315 SM00710 Parallel beta-helix repeats BED33_08355 SM00900 BED33_08355 BED33_08440 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED33_08450 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_08450 SM00866 BED33_08450 BED33_08470 SM01068 Putative carbohydrate binding domain BED33_08540 SM00448 cheY-homologous receiver domain BED33_08540 SM00862 Transcriptional regulatory protein, C terminal BED33_08545 SM00091 PAS domain BED33_08545 SM00387 Histidine kinase-like ATPases BED33_08545 SM00388 His Kinase A (phosphoacceptor) domain BED33_08565 SM00642 Alpha-amylase domain BED33_08610 SM01323 BED33_08610 BED33_08670 SM00861 Transketolase, pyrimidine binding domain BED33_08685 SM00981 BED33_08685 BED33_08770 SM00382 ATPases associated with a variety of cellular activities BED33_08770 SM00994 ClpX C4-type zinc finger BED33_08770 SM01086 C-terminal, D2-small domain, of ClpB protein BED33_08775 SM00382 ATPases associated with a variety of cellular activities BED33_08775 SM00464 Found in ATP-dependent protease La (LON) BED33_08780 SM00411 bacterial (prokaryotic) histone like domain BED33_08790 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED33_08820 SM00344 helix_turn_helix ASNC type BED33_08825 SM00382 ATPases associated with a variety of cellular activities BED33_08830 SM00382 ATPases associated with a variety of cellular activities BED33_08835 SM00938 Nitrogen regulatory protein P-II BED33_08880 SM00382 ATPases associated with a variety of cellular activities BED33_08975 SM00382 ATPases associated with a variety of cellular activities BED33_08985 SM00493 BED33_08985 BED33_08990 SM00387 Histidine kinase-like ATPases BED33_09090 SM00422 helix_turn_helix, mercury resistance BED33_09100 SM00244 prohibitin homologues BED33_09110 SM00822 BED33_09110 BED33_09120 SM00382 ATPases associated with a variety of cellular activities BED33_09135 SM01001 AIR carboxylase BED33_09150 SM00840 BED33_09150 BED33_09285 SM00382 ATPases associated with a variety of cellular activities BED33_09610 SM00530 Helix-turn-helix XRE-family like proteins BED33_09635 SM00382 ATPases associated with a variety of cellular activities BED33_09675 SM00507 HNH nucleases BED33_09735 SM01252 BED33_09735 BED33_09825 SM01040 BRO family, N-terminal domain BED33_09830 SM01252 BED33_09830 BED33_09980 SM00448 cheY-homologous receiver domain BED33_09980 SM00862 Transcriptional regulatory protein, C terminal BED33_10000 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BED33_10015 SM00382 ATPases associated with a variety of cellular activities BED33_10050 SM00357 Cold shock protein domain BED33_10060 SM00267 diguanylate cyclase BED33_10070 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_10085 SM00936 Penicillin-binding protein 5, C-terminal domain BED33_10140 SM00382 ATPases associated with a variety of cellular activities BED33_10155 SM00062 Bacterial periplasmic substrate-binding proteins BED33_10170 SM00116 Domain in cystathionine beta-synthase and other proteins. BED33_10170 SM01091 Transporter associated domain BED33_10185 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_10270 SM01081 Putative carbohydrate binding domain BED33_10285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_10320 SM00448 cheY-homologous receiver domain BED33_10320 SM00862 Transcriptional regulatory protein, C terminal BED33_10325 SM00387 Histidine kinase-like ATPases BED33_10325 SM00388 His Kinase A (phosphoacceptor) domain BED33_10390 SM00796 Allophanate hydrolase subunit 1 BED33_10395 SM00797 Allophanate hydrolase subunit 2 BED33_10445 SM00861 Transketolase, pyrimidine binding domain BED33_10460 SM00881 CoA binding domain BED33_10565 SM00855 Phosphoglycerate mutase family BED33_10570 SM00477 DNA/RNA non-specific endonuclease BED33_10570 SM00892 DNA/RNA non-specific endonuclease BED33_10615 SM00382 ATPases associated with a variety of cellular activities BED33_10640 SM00382 ATPases associated with a variety of cellular activities BED33_10660 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_10660 SM00876 Biotin and Thiamin Synthesis associated domain BED33_10680 SM00382 ATPases associated with a variety of cellular activities BED33_10685 SM00487 DEAD-like helicases superfamily BED33_10685 SM00490 helicase superfamily c-terminal domain BED33_10700 SM00729 Elongator protein 3, MiaB family, Radical SAM BED33_10735 SM00382 ATPases associated with a variety of cellular activities BED33_10750 SM00487 DEAD-like helicases superfamily BED33_10750 SM00490 helicase superfamily c-terminal domain BED33_10765 SM00116 Domain in cystathionine beta-synthase and other proteins. BED33_10780 SM01118 BED33_10780 BED33_10785 SM00507 HNH nucleases BED33_10800 SM00382 ATPases associated with a variety of cellular activities BED33_10845 SM00382 ATPases associated with a variety of cellular activities BED33_10850 SM00450 Rhodanese Homology Domain BED33_10875 SM00382 ATPases associated with a variety of cellular activities BED33_10920 SM00487 DEAD-like helicases superfamily BED33_10920 SM00488 BED33_10920 BED33_10920 SM00491 BED33_10920 BED33_10945 SM00903 Flavin reductase like domain BED33_10955 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED33_10955 SM00091 PAS domain BED33_10955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_10960 SM00382 ATPases associated with a variety of cellular activities BED33_10970 SM00062 Bacterial periplasmic substrate-binding proteins BED33_10970 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED33_11000 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BED33_11040 SM00382 ATPases associated with a variety of cellular activities BED33_11055 SM00852 Probable molybdopterin binding domain BED33_11070 SM00382 ATPases associated with a variety of cellular activities BED33_11095 SM00829 Enoylreductase BED33_11120 SM00354 helix_turn _helix lactose operon repressor BED33_11130 SM00382 ATPases associated with a variety of cellular activities BED33_11140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED33_11140 SM00382 ATPases associated with a variety of cellular activities BED33_11225 SM00919 Malic enzyme, NAD binding domain BED33_11225 SM01274 BED33_11225 BED33_11300 SM01091 Transporter associated domain BED33_11330 SM00382 ATPases associated with a variety of cellular activities BED33_11395 SM01350 BED33_11395 BED33_11450 SM00382 ATPases associated with a variety of cellular activities BED33_11500 SM00382 ATPases associated with a variety of cellular activities BED33_11535 SM00877 BED33_11535 BED33_11540 SM00877 BED33_11540 BED33_11580 SM00877 BED33_11580 BED33_11585 SM00877 BED33_11585 BED33_11615 SM00877 BED33_11615 BED33_11620 SM00877 BED33_11620 BED33_11630 SM00342 helix_turn_helix, arabinose operon control protein BED33_11710 SM00382 ATPases associated with a variety of cellular activities BED33_11730 SM00855 Phosphoglycerate mutase family BED33_11750 SM00421 helix_turn_helix, Lux Regulon BED33_11830 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_11830 SM01134 BED33_11830 BED33_11840 SM00260 Two component signalling adaptor domain BED33_11840 SM00448 cheY-homologous receiver domain BED33_11850 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_11870 SM00382 ATPases associated with a variety of cellular activities BED33_11890 SM00387 Histidine kinase-like ATPases BED33_11895 SM00421 helix_turn_helix, Lux Regulon BED33_11895 SM00448 cheY-homologous receiver domain BED33_11900 SM00448 cheY-homologous receiver domain BED33_11905 SM00387 Histidine kinase-like ATPases BED33_11920 SM00764 Citrate lyase ligase C-terminal domain BED33_12045 SM00421 helix_turn_helix, Lux Regulon BED33_12045 SM00448 cheY-homologous receiver domain BED33_12120 SM00344 helix_turn_helix ASNC type BED33_12130 SM00829 Enoylreductase BED33_12140 SM01038 Beta galactosidase small chain BED33_12145 SM00354 helix_turn _helix lactose operon repressor BED33_12150 SM00357 Cold shock protein domain BED33_12160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_12160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_12180 SM00831 Cation transporter/ATPase, N-terminus BED33_12185 SM00829 Enoylreductase BED33_12215 SM00073 Histidine Phosphotransfer domain BED33_12215 SM00260 Two component signalling adaptor domain BED33_12215 SM00387 Histidine kinase-like ATPases BED33_12215 SM01231 BED33_12215 BED33_12220 SM00260 Two component signalling adaptor domain BED33_12225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_12225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_12225 SM00319 Homologues of the ligand binding domain of Tar BED33_12230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_12230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_12230 SM00319 Homologues of the ligand binding domain of Tar BED33_12235 SM00138 Methyltransferase, chemotaxis proteins BED33_12240 SM00448 cheY-homologous receiver domain BED33_12245 SM00448 cheY-homologous receiver domain BED33_12290 SM00858 BED33_12290 BED33_12335 SM00047 Lysozyme subfamily 2 BED33_12395 SM00382 ATPases associated with a variety of cellular activities BED33_12440 SM00478 endonuclease III BED33_12445 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_12450 SM00342 helix_turn_helix, arabinose operon control protein BED33_12500 SM00062 Bacterial periplasmic substrate-binding proteins BED33_12500 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED33_12510 SM00382 ATPases associated with a variety of cellular activities BED33_12570 SM00530 Helix-turn-helix XRE-family like proteins BED33_12590 SM00903 Flavin reductase like domain BED33_12665 SM00642 Alpha-amylase domain BED33_12690 SM00465 GIY-YIG type nucleases (URI domain) BED33_12795 SM00530 Helix-turn-helix XRE-family like proteins BED33_12875 SM01400 BED33_12875 BED33_12895 SM00937 BED33_12895 BED33_12925 SM00267 diguanylate cyclase BED33_12950 SM00481 DNA polymerase alpha chain like domain BED33_13025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_13025 SM00387 Histidine kinase-like ATPases BED33_13040 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_13100 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_13100 SM00866 BED33_13100 BED33_13125 SM00869 Autotransporter beta-domain BED33_13135 SM00257 Lysin motif BED33_13175 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_13175 SM01134 BED33_13175 BED33_13195 SM00363 S4 RNA-binding domain BED33_13265 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED33_13270 SM00382 ATPases associated with a variety of cellular activities BED33_13285 SM00382 ATPases associated with a variety of cellular activities BED33_13295 SM00257 Lysin motif BED33_13350 SM00487 DEAD-like helicases superfamily BED33_13350 SM00491 BED33_13350 BED33_13370 SM00341 Helicase and RNase D C-terminal BED33_13370 SM00474 3'-5' exonuclease BED33_13455 SM01022 BED33_13455 BED33_13475 SM00972 Spore Coat Protein U domain BED33_13480 SM00972 Spore Coat Protein U domain BED33_13485 SM00972 Spore Coat Protein U domain BED33_13510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED33_13515 SM00945 ProQ/FINO family BED33_13520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED33_13520 SM00245 tail specific protease BED33_13545 SM00346 helix_turn_helix isocitrate lyase regulation BED33_13550 SM00644 BED33_13550 BED33_13580 SM00382 ATPases associated with a variety of cellular activities BED33_13670 SM00382 ATPases associated with a variety of cellular activities BED33_13720 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED33_13745 SM00873 B3/4 domain BED33_13745 SM00874 tRNA synthetase B5 domain BED33_13745 SM00896 Ferredoxin-fold anticodon binding domain BED33_13750 SM00411 bacterial (prokaryotic) histone like domain BED33_13775 SM00382 ATPases associated with a variety of cellular activities BED33_13895 SM00382 ATPases associated with a variety of cellular activities BED33_13965 SM00354 helix_turn _helix lactose operon repressor BED33_13985 SM00479 BED33_13985 BED33_14040 SM00347 helix_turn_helix multiple antibiotic resistance protein BED33_14065 SM00363 S4 RNA-binding domain BED33_14120 SM00382 ATPases associated with a variety of cellular activities BED33_14125 SM00382 ATPases associated with a variety of cellular activities BED33_14155 SM00382 ATPases associated with a variety of cellular activities BED33_14190 SM00953 BED33_14190 BED33_14200 SM00091 PAS domain BED33_14200 SM00382 ATPases associated with a variety of cellular activities BED33_14210 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED33_14235 SM00148 Phospholipase C, catalytic domain (part); domain X BED33_14285 SM00382 ATPases associated with a variety of cellular activities BED33_14285 SM00487 DEAD-like helicases superfamily BED33_14285 SM00490 helicase superfamily c-terminal domain BED33_14285 SM00847 Helicase associated domain (HA2) Add an annotation BED33_14295 SM00530 Helix-turn-helix XRE-family like proteins BED33_14300 SM00020 Trypsin-like serine protease BED33_14315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_14315 SM00387 Histidine kinase-like ATPases BED33_14315 SM00388 His Kinase A (phosphoacceptor) domain BED33_14320 SM00448 cheY-homologous receiver domain BED33_14320 SM00862 Transcriptional regulatory protein, C terminal BED33_14345 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BED33_14345 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BED33_14360 SM00100 Cyclic nucleotide-monophosphate binding domain BED33_14360 SM00419 helix_turn_helix, cAMP Regulatory protein BED33_14380 SM00871 Bacterial transcription activator, effector binding domain BED33_14385 SM00822 BED33_14385 BED33_14430 SM00644 BED33_14430 BED33_14495 SM00421 helix_turn_helix, Lux Regulon BED33_14520 SM00354 helix_turn _helix lactose operon repressor BED33_14550 SM00342 helix_turn_helix, arabinose operon control protein BED33_14560 SM00382 ATPases associated with a variety of cellular activities BED33_14635 SM00342 helix_turn_helix, arabinose operon control protein BED33_14645 SM00900 BED33_14645 BED33_14655 SM00478 endonuclease III BED33_14655 SM00525 BED33_14655 BED33_14820 SM00382 ATPases associated with a variety of cellular activities BED33_14840 SM00530 Helix-turn-helix XRE-family like proteins BED33_14845 SM00530 Helix-turn-helix XRE-family like proteins BED33_14925 SM00357 Cold shock protein domain BED33_14925 SM00955 BED33_14925 BED33_14945 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_14945 SM01134 BED33_14945 BED33_14955 SM01007 Class II Aldolase and Adducin N-terminal domain BED33_14970 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BED33_14985 SM00530 Helix-turn-helix XRE-family like proteins BED33_14995 SM00028 Tetratricopeptide repeats BED33_15005 SM00014 Acid phosphatase homologues BED33_15030 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED33_15030 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED33_15030 SM00493 BED33_15030 BED33_15045 SM00822 BED33_15045 BED33_15060 SM00363 S4 RNA-binding domain BED33_15070 SM00481 DNA polymerase alpha chain like domain BED33_15105 SM00749 bacterial OsmY and nodulation domain BED33_15160 SM00155 Phospholipase D. Active site motifs. BED33_15170 SM00382 ATPases associated with a variety of cellular activities BED33_15175 SM00382 ATPases associated with a variety of cellular activities BED33_15220 SM00528 Domain in histone-like proteins of HNS family BED33_15225 SM00984 UDP binding domain BED33_15230 SM00448 cheY-homologous receiver domain BED33_15285 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED33_15285 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED33_15285 SM00493 BED33_15285 BED33_15305 SM00870 BED33_15305 BED33_15330 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED33_15345 SM00763 PrkA AAA domain BED33_15375 SM00052 Putative diguanylate phosphodiesterase BED33_15375 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED33_15375 SM00091 PAS domain BED33_15375 SM00267 diguanylate cyclase BED33_15385 SM01005 Alanine racemase, C-terminal domain BED33_15400 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_15440 SM00836 DALR anticodon binding domain BED33_15440 SM01016 Arginyl tRNA synthetase N terminal dom BED33_15520 SM00382 ATPases associated with a variety of cellular activities BED33_15570 SM01007 Class II Aldolase and Adducin N-terminal domain BED33_15580 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_15580 SM01134 BED33_15580 BED33_15585 SM00387 Histidine kinase-like ATPases BED33_15590 SM00448 cheY-homologous receiver domain BED33_15720 SM00479 BED33_15720 BED33_15735 SM01022 BED33_15735 BED33_15745 SM00487 DEAD-like helicases superfamily BED33_15745 SM00490 helicase superfamily c-terminal domain BED33_15780 SM01091 Transporter associated domain BED33_15815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED33_15815 SM00091 PAS domain BED33_15815 SM00267 diguanylate cyclase BED33_15840 SM00357 Cold shock protein domain BED33_15885 SM00342 helix_turn_helix, arabinose operon control protein BED33_15905 SM00382 ATPases associated with a variety of cellular activities BED33_15910 SM00090 RIO-like kinase BED33_15925 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED33_15925 SM00091 PAS domain BED33_15925 SM00267 diguanylate cyclase BED33_15945 SM00342 helix_turn_helix, arabinose operon control protein BED33_15995 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED33_15995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_16005 SM00354 helix_turn _helix lactose operon repressor BED33_16010 SM00640 Glycosyl hydrolases family 32 BED33_16060 SM01329 BED33_16060 BED33_16095 SM00448 cheY-homologous receiver domain BED33_16095 SM00862 Transcriptional regulatory protein, C terminal BED33_16100 SM00387 Histidine kinase-like ATPases BED33_16100 SM00388 His Kinase A (phosphoacceptor) domain BED33_16130 SM00382 ATPases associated with a variety of cellular activities BED33_16140 SM00487 DEAD-like helicases superfamily BED33_16140 SM00490 helicase superfamily c-terminal domain BED33_16140 SM00982 BED33_16140 BED33_16140 SM01058 CarD-like/TRCF domain BED33_16205 SM00382 ATPases associated with a variety of cellular activities BED33_16245 SM00825 Beta-ketoacyl synthase BED33_16255 SM00822 BED33_16255 BED33_16260 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BED33_16290 SM00363 S4 RNA-binding domain BED33_16295 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_16325 SM00421 helix_turn_helix, Lux Regulon BED33_16335 SM00450 Rhodanese Homology Domain BED33_16360 SM00421 helix_turn_helix, Lux Regulon BED33_16360 SM00448 cheY-homologous receiver domain BED33_16420 SM01091 Transporter associated domain BED33_16435 SM00421 helix_turn_helix, Lux Regulon BED33_16505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED33_16510 SM00992 Hemimethylated DNA-binding protein YccV like BED33_16515 SM00881 CoA binding domain BED33_16525 SM00851 MGS-like domain BED33_16580 SM00825 Beta-ketoacyl synthase BED33_16600 SM00382 ATPases associated with a variety of cellular activities BED33_16605 SM00981 BED33_16605 BED33_16655 SM00849 Metallo-beta-lactamase superfamily BED33_16710 SM00357 Cold shock protein domain BED33_16715 SM00357 Cold shock protein domain BED33_16720 SM01150 BED33_16720 BED33_16730 SM00382 ATPases associated with a variety of cellular activities BED33_16735 SM00849 Metallo-beta-lactamase superfamily BED33_16740 SM00411 bacterial (prokaryotic) histone like domain BED33_16745 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_16770 SM00870 BED33_16770 BED33_16820 SM00382 ATPases associated with a variety of cellular activities BED33_16830 SM00843 BED33_16830 BED33_16835 SM00344 helix_turn_helix ASNC type BED33_16845 SM00382 ATPases associated with a variety of cellular activities BED33_16850 SM00382 ATPases associated with a variety of cellular activities BED33_16860 SM00316 Ribosomal protein S1-like RNA-binding domain BED33_16865 SM00382 ATPases associated with a variety of cellular activities BED33_16865 SM01086 C-terminal, D2-small domain, of ClpB protein BED33_16875 SM00357 Cold shock protein domain BED33_16880 SM00382 ATPases associated with a variety of cellular activities BED33_16945 SM00382 ATPases associated with a variety of cellular activities BED33_16950 SM00062 Bacterial periplasmic substrate-binding proteins BED33_16950 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED33_16965 SM00062 Bacterial periplasmic substrate-binding proteins BED33_16965 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED33_16990 SM00382 ATPases associated with a variety of cellular activities BED33_17025 SM00014 Acid phosphatase homologues BED33_17030 SM01133 BED33_17030 BED33_17035 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_17035 SM01134 BED33_17035 BED33_17055 SM00936 Penicillin-binding protein 5, C-terminal domain BED33_17060 SM00116 Domain in cystathionine beta-synthase and other proteins. BED33_17075 SM00382 ATPases associated with a variety of cellular activities BED33_17075 SM00930 BED33_17075 BED33_17105 SM00382 ATPases associated with a variety of cellular activities BED33_17140 SM00518 AP endonuclease family 2 BED33_17165 SM00862 Transcriptional regulatory protein, C terminal BED33_17210 SM00841 Elongation factor P, C-terminal BED33_17210 SM01185 BED33_17210 BED33_17230 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_17230 SM00895 BED33_17230 BED33_17240 SM00833 Cobalamin synthesis protein cobW C-terminal domain BED33_17245 SM00014 Acid phosphatase homologues BED33_17260 SM00052 Putative diguanylate phosphodiesterase BED33_17280 SM00382 ATPases associated with a variety of cellular activities BED33_17295 SM00363 S4 RNA-binding domain BED33_17300 SM00487 DEAD-like helicases superfamily BED33_17300 SM00490 helicase superfamily c-terminal domain BED33_17370 SM01057 Eukaryotic-type carbonic anhydrase BED33_17410 SM00530 Helix-turn-helix XRE-family like proteins BED33_17425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED33_17425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_17475 SM00387 Histidine kinase-like ATPases BED33_17475 SM00388 His Kinase A (phosphoacceptor) domain BED33_17480 SM00421 helix_turn_helix, Lux Regulon BED33_17480 SM00448 cheY-homologous receiver domain BED33_17485 SM00387 Histidine kinase-like ATPases BED33_17485 SM00388 His Kinase A (phosphoacceptor) domain BED33_17485 SM00448 cheY-homologous receiver domain BED33_17490 SM00434 DNA Topoisomerase IV BED33_17530 SM00852 Probable molybdopterin binding domain BED33_17545 SM01060 BED33_17545 BED33_17555 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED33_17605 SM00354 helix_turn _helix lactose operon repressor BED33_17670 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED33_17670 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED33_17675 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED33_17710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_17750 SM00354 helix_turn _helix lactose operon repressor BED33_17785 SM00052 Putative diguanylate phosphodiesterase BED33_17800 SM00382 ATPases associated with a variety of cellular activities BED33_17815 SM00062 Bacterial periplasmic substrate-binding proteins BED33_17860 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED33_17870 SM00342 helix_turn_helix, arabinose operon control protein BED33_17885 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_17925 SM00354 helix_turn _helix lactose operon repressor BED33_17965 SM00825 Beta-ketoacyl synthase BED33_18005 SM00463 Small MutS-related domain BED33_18080 SM00382 ATPases associated with a variety of cellular activities BED33_18115 SM00778 Zinc-binding domain of primase-helicase BED33_18185 SM00354 helix_turn _helix lactose operon repressor BED33_18190 SM00867 YceI-like domain BED33_18220 SM00382 ATPases associated with a variety of cellular activities BED33_18265 SM00382 ATPases associated with a variety of cellular activities BED33_18310 SM00448 cheY-homologous receiver domain BED33_18310 SM00850 LytTr DNA-binding domain BED33_18415 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED33_18415 SM00292 breast cancer carboxy-terminal domain BED33_18415 SM00532 Ligase N family BED33_18420 SM00771 ZipA, C-terminal domain (FtsZ-binding) BED33_18450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_18450 SM00387 Histidine kinase-like ATPases BED33_18450 SM00388 His Kinase A (phosphoacceptor) domain BED33_18455 SM00448 cheY-homologous receiver domain BED33_18455 SM00862 Transcriptional regulatory protein, C terminal BED33_18465 SM00382 ATPases associated with a variety of cellular activities BED33_18475 SM00382 ATPases associated with a variety of cellular activities BED33_18520 SM01130 BED33_18520 BED33_18565 SM00919 Malic enzyme, NAD binding domain BED33_18565 SM01274 BED33_18565 BED33_18585 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED33_18600 SM00421 helix_turn_helix, Lux Regulon BED33_18600 SM00448 cheY-homologous receiver domain BED33_18725 SM01130 BED33_18725 BED33_18790 SM00382 ATPases associated with a variety of cellular activities BED33_18825 SM00052 Putative diguanylate phosphodiesterase BED33_18825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED33_18825 SM00091 PAS domain BED33_18825 SM00267 diguanylate cyclase BED33_18855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_18855 SM00387 Histidine kinase-like ATPases BED33_18855 SM00388 His Kinase A (phosphoacceptor) domain BED33_18860 SM00448 cheY-homologous receiver domain BED33_18860 SM00862 Transcriptional regulatory protein, C terminal BED33_18875 SM00046 Diacylglycerol kinase catalytic domain (presumed) BED33_18905 SM00420 helix_turn_helix, Deoxyribose operon repressor BED33_18905 SM01134 BED33_18905 BED33_18910 SM00116 Domain in cystathionine beta-synthase and other proteins. BED33_19025 SM00116 Domain in cystathionine beta-synthase and other proteins. BED33_19025 SM01240 BED33_19025 BED33_19050 SM00382 ATPases associated with a variety of cellular activities BED33_19060 SM00564 beta-propeller repeat BED33_19080 SM00530 Helix-turn-helix XRE-family like proteins BED33_19085 SM00028 Tetratricopeptide repeats BED33_19095 SM00562 BED33_19095 BED33_19110 SM01359 BED33_19110 BED33_19110 SM01360 BED33_19110 BED33_19115 SM00869 Autotransporter beta-domain BED33_19145 SM00271 DnaJ molecular chaperone homology domain BED33_19240 SM00938 Nitrogen regulatory protein P-II BED33_19250 SM00382 ATPases associated with a variety of cellular activities BED33_19250 SM00448 cheY-homologous receiver domain BED33_19260 SM00387 Histidine kinase-like ATPases BED33_19260 SM00388 His Kinase A (phosphoacceptor) domain BED33_19270 SM01211 BED33_19270 BED33_19275 SM00062 Bacterial periplasmic substrate-binding proteins BED33_19335 SM00358 Double-stranded RNA binding motif BED33_19335 SM00535 Ribonuclease III family BED33_19385 SM00487 DEAD-like helicases superfamily BED33_19385 SM00490 helicase superfamily c-terminal domain BED33_19400 SM00248 ankyrin repeats BED33_19420 SM00986 Uracil DNA glycosylase superfamily BED33_19420 SM00987 UreE urease accessory protein, C-terminal domain BED33_19480 SM00342 helix_turn_helix, arabinose operon control protein BED33_19565 SM00988 UreE urease accessory protein, N-terminal domain BED33_19585 SM00382 ATPases associated with a variety of cellular activities BED33_19590 SM00382 ATPases associated with a variety of cellular activities BED33_19620 SM00450 Rhodanese Homology Domain BED33_19635 SM00357 Cold shock protein domain BED33_19660 SM00342 helix_turn_helix, arabinose operon control protein BED33_19710 SM00382 ATPases associated with a variety of cellular activities BED33_19730 SM00479 BED33_19730 BED33_19745 SM00849 Metallo-beta-lactamase superfamily BED33_19750 SM00257 Lysin motif BED33_19825 SM00382 ATPases associated with a variety of cellular activities BED33_19825 SM00930 BED33_19825 BED33_19865 SM01322 BED33_19865 BED33_19885 SM00977 TilS substrate C-terminal domain BED33_19905 SM00481 DNA polymerase alpha chain like domain BED33_19935 SM00935 Outer membrane protein (OmpH-like) BED33_19945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED33_19990 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_20035 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED33_20035 SM00475 5'-3' exonuclease BED33_20080 SM00925 MltA specific insert domain BED33_20100 SM00646 BED33_20100 BED33_20160 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED33_20175 SM00927 DNA mismatch repair enzyme MutH BED33_20195 SM00563 Phosphate acyltransferases BED33_20205 SM00354 helix_turn _helix lactose operon repressor BED33_20230 SM00849 Metallo-beta-lactamase superfamily BED33_20250 SM00862 Transcriptional regulatory protein, C terminal BED33_20300 SM00382 ATPases associated with a variety of cellular activities BED33_20320 SM00947 Carbonic anhydrase BED33_20330 SM00822 BED33_20330 BED33_20340 SM00271 DnaJ molecular chaperone homology domain BED33_20350 SM00091 PAS domain BED33_20350 SM00267 diguanylate cyclase BED33_20375 SM00530 Helix-turn-helix XRE-family like proteins BED33_20385 SM00530 Helix-turn-helix XRE-family like proteins BED33_20490 SM00937 BED33_20490 BED33_20520 SM00387 Histidine kinase-like ATPases BED33_20520 SM00388 His Kinase A (phosphoacceptor) domain BED33_20525 SM00448 cheY-homologous receiver domain BED33_20525 SM00862 Transcriptional regulatory protein, C terminal BED33_20560 SM00822 BED33_20560 BED33_20595 SM01011 Aminopeptidase P, N-terminal domain BED33_20620 SM01192 BED33_20620 BED33_20620 SM01193 BED33_20620 BED33_20635 SM00954 Region found in RelA / SpoT proteins BED33_20645 SM00073 Histidine Phosphotransfer domain BED33_20645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED33_20645 SM00387 Histidine kinase-like ATPases BED33_20645 SM00388 His Kinase A (phosphoacceptor) domain BED33_20645 SM00448 cheY-homologous receiver domain BED33_20650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED33_20655 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED33_20705 SM00382 ATPases associated with a variety of cellular activities BED33_20715 SM00487 DEAD-like helicases superfamily BED33_20715 SM00490 helicase superfamily c-terminal domain BED33_20715 SM00847 Helicase associated domain (HA2) Add an annotation BED33_20775 SM00382 ATPases associated with a variety of cellular activities BED33_20780 SM00947 Carbonic anhydrase BED33_20835 SM00342 helix_turn_helix, arabinose operon control protein BED33_20860 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED33_20860 SM00895 BED33_20860 BED33_20875 SM00644 BED33_20875 BED33_20900 SM01240 BED33_20900 BED33_20925 SM00957 SecA DEAD-like domain BED33_20925 SM00958 SecA preprotein cross-linking domain BED33_20945 SM00864 Tubulin/FtsZ family, GTPase domain BED33_20945 SM00865 Tubulin/FtsZ family, C-terminal domain BED33_20950 SM00842 Cell division protein FtsA BED33_21025 SM00354 helix_turn _helix lactose operon repressor BED33_21050 SM00917 LeuA allosteric (dimerisation) domain BED33_21055 SM01329 BED33_21055 BED33_21120 SM00382 ATPases associated with a variety of cellular activities BED33_21130 SM00486 DNA polymerase type-B family BED33_21135 SM00487 DEAD-like helicases superfamily BED33_21135 SM00490 helicase superfamily c-terminal domain BED33_21140 SM00634 Bacterial Ig-like domain (group 1) BED33_21150 SM00271 DnaJ molecular chaperone homology domain BED33_21170 SM00650 Ribosomal RNA adenine dimethylases BED33_21205 SM00851 MGS-like domain BED33_21205 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED33_21210 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BED33_21240 SM00904 Riboflavin kinase BED33_21265 SM00271 DnaJ molecular chaperone homology domain BED33_21280 SM00247 Beta/gamma crystallins BED33_21290 SM00852 Probable molybdopterin binding domain BED33_21330 SM00448 cheY-homologous receiver domain BED33_21330 SM00862 Transcriptional regulatory protein, C terminal BED33_21340 SM00342 helix_turn_helix, arabinose operon control protein BED33_21340 SM00871 Bacterial transcription activator, effector binding domain BED33_21345 SM00855 Phosphoglycerate mutase family BED33_21365 SM00831 Cation transporter/ATPase, N-terminus BED33_21375 SM00267 diguanylate cyclase BED33_21385 SM00382 ATPases associated with a variety of cellular activities BED33_21400 SM00829 Enoylreductase BED33_21435 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BED33_21440 SM01133 BED33_21440 BED33_21465 SM00749 bacterial OsmY and nodulation domain BED33_21510 SM00267 diguanylate cyclase BED33_21545 SM00354 helix_turn _helix lactose operon repressor BED33_21550 SM00091 PAS domain BED33_21600 SM01120 BED33_21600 BED33_21655 SM00382 ATPases associated with a variety of cellular activities BED33_21675 SM01133 BED33_21675 BED33_21715 SM00194 Protein tyrosine phosphatase, catalytic domain BED33_21715 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED33_21785 SM00342 helix_turn_helix, arabinose operon control protein BED33_21910 SM00364 Leucine-rich repeats, bacterial type BED33_22015 SM00155 Phospholipase D. Active site motifs. BED33_22045 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED33_22060 SM00857 Resolvase, N terminal domain BED33_22140 SM00470 ParB-like nuclease domain BED33_22180 SM00194 Protein tyrosine phosphatase, catalytic domain BED33_22180 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED33_22245 SM00342 helix_turn_helix, arabinose operon control protein BED33_22295 SM00382 ATPases associated with a variety of cellular activities BED33_22380 SM00857 Resolvase, N terminal domain BED33_22385 SM00869 Autotransporter beta-domain BED33_22395 SM00912 haemagglutination activity domain BED33_22530 SM00634 Bacterial Ig-like domain (group 1) BED33_22540 SM00886 Stress responsive A/B Barrel Domain BED33_22625 SM00530 Helix-turn-helix XRE-family like proteins BED33_22845 SM00857 Resolvase, N terminal domain BED33_22850 SM00869 Autotransporter beta-domain