locus-tag class description BED34_00005 PF00589 Phage integrase family BED34_00045 PF18272 single-stranded DNA binding TraI N-terminal subdomain BED34_00045 PF07057 DNA helicase TraI BED34_00045 PF18340 DNA relaxase TraI 2B/2B-like domain BED34_00045 PF08751 TrwC relaxase BED34_00170 PF14319 Transposase zinc-binding domain BED34_00170 PF04986 Putative transposase BED34_00255 PF06834 TraU protein BED34_00280 PF06122 Conjugative relaxosome accessory transposon protein BED34_00295 PF00589 Phage integrase family BED34_00300 PF02796 Helix-turn-helix domain of resolvase BED34_00300 PF00239 Resolvase, N terminal domain BED34_00305 PF03212 Pertactin BED34_00305 PF13018 Extended Signal Peptide of Type V secretion system BED34_00305 PF03797 Autotransporter beta-domain BED34_00305 PF16168 Adhesin of bacterial autotransporter system, probable stalk BED34_00310 PF17287 POTRA domain BED34_00310 PF08479 POTRA domain, ShlB-type BED34_00310 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED34_00315 PF13018 Extended Signal Peptide of Type V secretion system BED34_00315 PF13332 Hemagglutinin repeat BED34_00315 PF05860 haemagglutination activity domain BED34_00315 PF04829 Pre-toxin domain with VENN motif BED34_00365 PF01527 Transposase BED34_00450 PF02369 Bacterial Ig-like domain (group 1) BED34_00450 PF11924 Inverse autotransporter, beta-domain BED34_00450 PF07979 Intimin C-type lectin domain BED34_00450 PF09134 Invasin, domain 3 BED34_00455 PF11924 Inverse autotransporter, beta-domain BED34_00455 PF09134 Invasin, domain 3 BED34_00455 PF02369 Bacterial Ig-like domain (group 1) BED34_00485 PF00308 Bacterial dnaA protein BED34_00485 PF08299 Bacterial dnaA protein helix-turn-helix BED34_00485 PF11638 DnaA N-terminal domain BED34_00490 PF00712 DNA polymerase III beta subunit, N-terminal domain BED34_00490 PF02768 DNA polymerase III beta subunit, C-terminal domain BED34_00490 PF02767 DNA polymerase III beta subunit, central domain BED34_00495 PF02463 RecF/RecN/SMC N terminal domain BED34_00500 PF00204 DNA gyrase B BED34_00500 PF00986 DNA gyrase B subunit, carboxyl terminus BED34_00500 PF18053 DNA gyrase B subunit insert domain BED34_00500 PF01751 Toprim domain BED34_00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_00510 PF02423 Ornithine cyclodeaminase/mu-crystallin family BED34_00515 PF00291 Pyridoxal-phosphate dependent enzyme BED34_00520 PF12566 Protein of unknown function (DUF3748) BED34_00520 PF07676 WD40-like Beta Propeller Repeat BED34_00525 PF07119 Protein of unknown function (DUF1375) BED34_00530 PF00011 Hsp20/alpha crystallin family BED34_00535 PF00011 Hsp20/alpha crystallin family BED34_00540 PF02371 Transposase IS116/IS110/IS902 family BED34_00540 PF01548 Transposase BED34_00550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED34_00550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED34_00555 PF00230 Major intrinsic protein BED34_00565 PF06005 Cell division protein ZapB BED34_00570 PF03737 Aldolase/RraA BED34_00575 PF01040 UbiA prenyltransferase family BED34_00580 PF10431 C-terminal, D2-small domain, of ClpB protein BED34_00580 PF07724 AAA domain (Cdc48 subfamily) BED34_00580 PF00004 ATPase family associated with various cellular activities (AAA) BED34_00585 PF00227 Proteasome subunit BED34_00590 PF05036 Sporulation related domain BED34_00595 PF00356 Bacterial regulatory proteins, lacI family BED34_00600 PF00271 Helicase conserved C-terminal domain BED34_00600 PF00270 DEAD/DEAH box helicase BED34_00600 PF18074 Primosomal protein N C-terminal domain BED34_00600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BED34_00600 PF17764 3′ DNA-binding domain (3′BD) BED34_00605 PF01197 Ribosomal protein L31 BED34_00610 PF01340 Met Apo-repressor, MetJ BED34_00615 PF01053 Cys/Met metabolism PLP-dependent enzyme BED34_00620 PF03447 Homoserine dehydrogenase, NAD binding domain BED34_00620 PF00742 Homoserine dehydrogenase BED34_00620 PF00696 Amino acid kinase family BED34_00625 PF02219 Methylenetetrahydrofolate reductase BED34_00630 PF00311 Phosphoenolpyruvate carboxylase BED34_00635 PF01546 Peptidase family M20/M25/M40 BED34_00635 PF07687 Peptidase dimerisation domain BED34_00640 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED34_00640 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED34_00645 PF00696 Amino acid kinase family BED34_00650 PF00206 Lyase BED34_00650 PF14698 Argininosuccinate lyase C-terminal BED34_00680 PF00664 ABC transporter transmembrane region BED34_00680 PF00005 ABC transporter BED34_00685 PF00529 HlyD membrane-fusion protein of T1SS BED34_00705 PF08534 Redoxin BED34_00705 PF00462 Glutaredoxin BED34_00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_00710 PF03466 LysR substrate binding domain BED34_00715 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_00715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED34_00720 PF00440 Bacterial regulatory proteins, tetR family BED34_00725 PF07226 Protein of unknown function (DUF1422) BED34_00730 PF05958 tRNA (Uracil-5-)-methyltransferase BED34_00735 PF07715 TonB-dependent Receptor Plug Domain BED34_00735 PF00593 TonB dependent receptor BED34_00740 PF01177 Asp/Glu/Hydantoin racemase BED34_00780 PF13407 Periplasmic binding protein domain BED34_00785 PF00005 ABC transporter BED34_00790 PF02653 Branched-chain amino acid transport system / permease component BED34_00795 PF02653 Branched-chain amino acid transport system / permease component BED34_00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_00800 PF03466 LysR substrate binding domain BED34_00805 PF04219 Protein of unknown function, DUF BED34_00810 PF13335 Magnesium chelatase, subunit ChlI C-terminal BED34_00810 PF01078 Magnesium chelatase, subunit ChlI BED34_00815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_00815 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_00815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_00825 PF01063 Amino-transferase class IV BED34_00830 PF00920 Dehydratase family BED34_00835 PF00291 Pyridoxal-phosphate dependent enzyme BED34_00835 PF00585 C-terminal regulatory domain of Threonine dehydratase BED34_00850 PF03466 LysR substrate binding domain BED34_00850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_00855 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BED34_00855 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BED34_00865 PF01320 Colicin immunity protein / pyocin immunity protein BED34_00870 PF01320 Colicin immunity protein / pyocin immunity protein BED34_00880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_00880 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_00900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_00900 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_00905 PF13592 Winged helix-turn helix BED34_00905 PF13358 DDE superfamily endonuclease BED34_00915 PF00356 Bacterial regulatory proteins, lacI family BED34_00930 PF06755 CbtA_toxin of type IV toxin-antitoxin system BED34_00940 PF00872 Transposase, Mutator family BED34_00945 PF12146 Serine aminopeptidase, S33 BED34_00980 PF07730 Histidine kinase BED34_00980 PF05231 MASE1 BED34_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_00985 PF00072 Response regulator receiver domain BED34_00985 PF00196 Bacterial regulatory proteins, luxR family BED34_00990 PF08019 Phosphoethanolamine transferase EptA/EptB BED34_00990 PF00884 Sulfatase BED34_00995 PF02566 OsmC-like protein BED34_01000 PF02371 Transposase IS116/IS110/IS902 family BED34_01000 PF01548 Transposase BED34_01005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_01010 PF00528 Binding-protein-dependent transport system inner membrane component BED34_01015 PF00528 Binding-protein-dependent transport system inner membrane component BED34_01015 PF12911 N-terminal TM domain of oligopeptide transport permease C BED34_01020 PF00005 ABC transporter BED34_01020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_01025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_01025 PF00005 ABC transporter BED34_01030 PF11658 Cellulose biosynthesis protein BcsG BED34_01035 PF11120 Cellulose biosynthesis protein BcsF BED34_01040 PF10995 Cellulose biosynthesis GIL BED34_01050 PF06564 Cellulose biosynthesis protein BcsQ BED34_01055 PF03552 Cellulose synthase BED34_01055 PF00535 Glycosyl transferase family 2 BED34_01055 PF07238 PilZ domain BED34_01060 PF03170 Bacterial cellulose synthase subunit BED34_01065 PF01270 Glycosyl hydrolases family 8 BED34_01070 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BED34_01080 PF17154 Gammaproteobacterial periplasmic sensor domain BED34_01080 PF00672 HAMP domain BED34_01080 PF00563 EAL domain BED34_01080 PF00990 Diguanylate cyclase, GGDEF domain BED34_01085 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED34_01090 PF06917 Periplasmic pectate lyase BED34_01100 PF00375 Sodium:dicarboxylate symporter family BED34_01105 PF05193 Peptidase M16 inactive domain BED34_01105 PF00675 Insulinase (Peptidase family M16) BED34_01110 PF00294 pfkB family carbohydrate kinase BED34_01115 PF01361 Tautomerase enzyme BED34_01120 PF00563 EAL domain BED34_01130 PF02611 CDP-diacylglycerol pyrophosphatase BED34_01135 PF03631 Virulence factor BrkB BED34_01140 PF03797 Autotransporter beta-domain BED34_01145 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_01145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED34_01150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BED34_01155 PF01432 Peptidase family M3 BED34_01160 PF04445 Putative SAM-dependent methyltransferase BED34_01165 PF08548 Peptidase M10 serralysin C terminal BED34_01165 PF00413 Matrixin BED34_01165 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BED34_01170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BED34_01170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED34_01175 PF00582 Universal stress protein family BED34_01180 PF01548 Transposase BED34_01180 PF02371 Transposase IS116/IS110/IS902 family BED34_01185 PF10625 Universal stress protein B (UspB) BED34_01190 PF01384 Phosphate transporter family BED34_01200 PF08721 TnsA endonuclease C terminal BED34_01200 PF08722 TnsA endonuclease N terminal BED34_01205 PF00665 Integrase core domain BED34_01210 PF13401 AAA domain BED34_01210 PF11426 Tn7 transposition regulator TnsC BED34_01235 PF13610 DDE domain BED34_01240 PF05362 Lon protease (S16) C-terminal proteolytic domain BED34_01240 PF02190 ATP-dependent protease La (LON) substrate-binding domain BED34_01240 PF00004 ATPase family associated with various cellular activities (AAA) BED34_01260 PF00375 Sodium:dicarboxylate symporter family BED34_01275 PF05034 Methylaspartate ammonia-lyase N-terminus BED34_01275 PF07476 Methylaspartate ammonia-lyase C-terminus BED34_01280 PF06368 Methylaspartate mutase E chain (MutE) BED34_01295 PF00288 GHMP kinases N terminal domain BED34_01300 PF10414 Sirohaem synthase dimerisation region BED34_01300 PF14824 Sirohaem biosynthesis protein central BED34_01300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_01305 PF03466 LysR substrate binding domain BED34_01305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_01310 PF05683 Fumarase C-terminus BED34_01310 PF05681 Fumarate hydratase (Fumerase) BED34_01330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_01330 PF03466 LysR substrate binding domain BED34_01335 PF07690 Major Facilitator Superfamily BED34_01340 PF00171 Aldehyde dehydrogenase family BED34_01345 PF04962 KduI/IolB family BED34_01355 PF00294 pfkB family carbohydrate kinase BED34_01360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_01360 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_01360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_01365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED34_01365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED34_01370 PF01261 Xylose isomerase-like TIM barrel BED34_01375 PF00583 Acetyltransferase (GNAT) family BED34_01380 PF17954 Quercetinase C-terminal cupin domain BED34_01380 PF02678 Pirin BED34_01385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_01385 PF00356 Bacterial regulatory proteins, lacI family BED34_01390 PF02447 GntP family permease BED34_01395 PF01202 Shikimate kinase BED34_01400 PF01914 MarC family integral membrane protein BED34_01405 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED34_01405 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED34_01410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_01410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_01410 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_01415 PF03306 Alpha-acetolactate decarboxylase BED34_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_01420 PF03466 LysR substrate binding domain BED34_01425 PF07694 5TMR of 5TMR-LYT BED34_01425 PF06580 Histidine kinase BED34_01430 PF00128 Alpha amylase, catalytic domain BED34_01430 PF02806 Alpha amylase, C-terminal all-beta domain BED34_01430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED34_01435 PF18390 Glycogen debranching enzyme C-terminal domain BED34_01435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BED34_01435 PF00128 Alpha amylase, catalytic domain BED34_01440 PF00483 Nucleotidyl transferase BED34_01445 PF00534 Glycosyl transferases group 1 BED34_01445 PF08323 Starch synthase catalytic domain BED34_01450 PF00343 Carbohydrate phosphorylase BED34_01455 PF01266 FAD dependent oxidoreductase BED34_01455 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BED34_01465 PF02371 Transposase IS116/IS110/IS902 family BED34_01465 PF01548 Transposase BED34_01470 PF00455 DeoR C terminal sensor domain BED34_01470 PF08220 DeoR-like helix-turn-helix domain BED34_01475 PF01694 Rhomboid family BED34_01475 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BED34_01480 PF00581 Rhodanese-like domain BED34_01490 PF00196 Bacterial regulatory proteins, luxR family BED34_01490 PF17874 MalT-like TPR region BED34_01495 PF00343 Carbohydrate phosphorylase BED34_01500 PF02446 4-alpha-glucanotransferase BED34_01505 PF01106 NifU-like domain BED34_01505 PF01521 Iron-sulphur cluster biosynthesis BED34_01510 PF00156 Phosphoribosyl transferase domain BED34_01515 PF00561 alpha/beta hydrolase fold BED34_01520 PF07338 Protein of unknown function (DUF1471) BED34_01525 PF02371 Transposase IS116/IS110/IS902 family BED34_01525 PF01548 Transposase BED34_01530 PF09012 FeoC like transcriptional regulator BED34_01535 PF07664 Ferrous iron transport protein B C terminus BED34_01535 PF17910 FeoB cytosolic helical domain BED34_01535 PF02421 Ferrous iron transport protein B BED34_01535 PF07670 Nucleoside recognition BED34_01540 PF04023 FeoA domain BED34_01545 PF17674 HHH domain BED34_01545 PF00575 S1 RNA binding domain BED34_01545 PF09371 Tex-like protein N-terminal domain BED34_01545 PF16921 Tex protein YqgF-like domain BED34_01570 PF01272 Transcription elongation factor, GreA/GreB, C-term BED34_01570 PF03449 Transcription elongation factor, N-terminal BED34_01575 PF00072 Response regulator receiver domain BED34_01575 PF00486 Transcriptional regulatory protein, C terminal BED34_01580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_01580 PF00672 HAMP domain BED34_01580 PF00512 His Kinase A (phospho-acceptor) domain BED34_01585 PF01293 Phosphoenolpyruvate carboxykinase BED34_01590 PF01430 Hsp33 protein BED34_01595 PF01479 S4 domain BED34_01600 PF13419 Haloacid dehalogenase-like hydrolase BED34_01605 PF07095 Intracellular growth attenuator protein IgaA BED34_01610 PF00293 NUDIX domain BED34_01615 PF00912 Transglycosylase BED34_01615 PF17092 Penicillin-binding protein OB-like domain BED34_01615 PF00905 Penicillin binding protein transpeptidase domain BED34_01640 PF03958 Bacterial type II/III secretion system short domain BED34_01640 PF00263 Bacterial type II and III secretion system protein BED34_01645 PF01202 Shikimate kinase BED34_01650 PF01761 3-dehydroquinate synthase BED34_01655 PF05036 Sporulation related domain BED34_01660 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED34_01665 PF00834 Ribulose-phosphate 3 epimerase family BED34_01675 PF00579 tRNA synthetases class I (W and Y) BED34_01680 PF14824 Sirohaem biosynthesis protein central BED34_01680 PF10414 Sirohaem synthase dimerisation region BED34_01680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_01690 PF13806 Rieske-like [2Fe-2S] domain BED34_01695 PF04324 BFD-like [2Fe-2S] binding domain BED34_01695 PF18267 Rubredoxin NAD+ reductase C-terminal domain BED34_01695 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_01695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED34_01695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED34_01700 PF07969 Amidohydrolase family BED34_01705 PF07690 Major Facilitator Superfamily BED34_01710 PF00356 Bacterial regulatory proteins, lacI family BED34_01715 PF02056 Family 4 glycosyl hydrolase BED34_01715 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED34_01720 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED34_01725 PF05872 Bacterial protein of unknown function (DUF853) BED34_01730 PF00117 Glutamine amidotransferase class-I BED34_01735 PF00202 Aminotransferase class-III BED34_01745 PF13545 Crp-like helix-turn-helix domain BED34_01745 PF00027 Cyclic nucleotide-binding domain BED34_01750 PF02566 OsmC-like protein BED34_01755 PF00485 Phosphoribulokinase / Uridine kinase family BED34_01760 PF06794 Uncharacterised protein family (UPF0270) BED34_01765 PF00561 alpha/beta hydrolase fold BED34_01770 PF01810 LysE type translocator BED34_01775 PF02567 Phenazine biosynthesis-like protein BED34_01780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED34_01790 PF00528 Binding-protein-dependent transport system inner membrane component BED34_01795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BED34_01805 PF00535 Glycosyl transferase family 2 BED34_01810 PF00005 ABC transporter BED34_01810 PF12848 ABC transporter BED34_01815 PF02525 Flavodoxin-like fold BED34_01820 PF02254 TrkA-N domain BED34_01820 PF00999 Sodium/hydrogen exchanger family BED34_01825 PF09526 Probable metal-binding protein (DUF2387) BED34_01830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED34_01835 PF04102 SlyX BED34_01840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED34_01840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED34_01845 PF13309 HTH domain BED34_01845 PF08348 YheO-like PAS domain BED34_01850 PF02635 DsrE/DsrF-like family BED34_01855 PF02635 DsrE/DsrF-like family BED34_01860 PF04077 DsrH like protein BED34_01865 PF00164 Ribosomal protein S12/S23 BED34_01870 PF00177 Ribosomal protein S7p/S5e BED34_01875 PF00009 Elongation factor Tu GTP binding domain BED34_01875 PF03144 Elongation factor Tu domain 2 BED34_01875 PF03764 Elongation factor G, domain IV BED34_01875 PF14492 Elongation Factor G, domain II BED34_01875 PF00679 Elongation factor G C-terminus BED34_01885 PF04324 BFD-like [2Fe-2S] binding domain BED34_01890 PF00210 Ferritin-like domain BED34_01895 PF00338 Ribosomal protein S10p/S20e BED34_01900 PF00297 Ribosomal protein L3 BED34_01905 PF00573 Ribosomal protein L4/L1 family BED34_01910 PF00276 Ribosomal protein L23 BED34_01915 PF03947 Ribosomal Proteins L2, C-terminal domain BED34_01915 PF00181 Ribosomal Proteins L2, RNA binding domain BED34_01920 PF00203 Ribosomal protein S19 BED34_01925 PF00237 Ribosomal protein L22p/L17e BED34_01930 PF00189 Ribosomal protein S3, C-terminal domain BED34_01930 PF07650 KH domain BED34_01935 PF00252 Ribosomal protein L16p/L10e BED34_01940 PF00831 Ribosomal L29 protein BED34_01945 PF00366 Ribosomal protein S17 BED34_01950 PF00238 Ribosomal protein L14p/L23e BED34_01955 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BED34_01955 PF00467 KOW motif BED34_01960 PF00281 Ribosomal protein L5 BED34_01960 PF00673 ribosomal L5P family C-terminus BED34_01965 PF00253 Ribosomal protein S14p/S29e BED34_01970 PF00410 Ribosomal protein S8 BED34_01975 PF00347 Ribosomal protein L6 BED34_01980 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BED34_01985 PF03719 Ribosomal protein S5, C-terminal domain BED34_01985 PF00333 Ribosomal protein S5, N-terminal domain BED34_01990 PF00327 Ribosomal protein L30p/L7e BED34_01995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BED34_02000 PF00344 SecY translocase BED34_02005 PF00444 Ribosomal protein L36 BED34_02015 PF00411 Ribosomal protein S11 BED34_02020 PF01479 S4 domain BED34_02020 PF00163 Ribosomal protein S4/S9 N-terminal domain BED34_02025 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BED34_02025 PF01000 RNA polymerase Rpb3/RpoA insert domain BED34_02025 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BED34_02030 PF01196 Ribosomal protein L17 BED34_02035 PF09350 Domain of unknown function (DUF1992) BED34_02040 PF13411 MerR HTH family regulatory protein BED34_02045 PF03889 Alternative ribosome-rescue factor A BED34_02055 PF01741 Large-conductance mechanosensitive channel, MscL BED34_02060 PF02254 TrkA-N domain BED34_02060 PF02080 TrkA-C domain BED34_02065 PF01029 NusB family BED34_02065 PF01189 16S rRNA methyltransferase RsmB/F BED34_02070 PF00551 Formyl transferase BED34_02070 PF02911 Formyl transferase, C-terminal domain BED34_02075 PF01327 Polypeptide deformylase BED34_02080 PF02481 DNA recombination-mediator protein A BED34_02080 PF17782 DprA winged helix domain BED34_02085 PF04361 Protein of unknown function (DUF494) BED34_02090 PF01396 Topoisomerase DNA binding C4 zinc finger BED34_02095 PF01300 Telomere recombination BED34_02100 PF08501 Shikimate dehydrogenase substrate binding domain BED34_02100 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BED34_02100 PF01488 Shikimate / quinate 5-dehydrogenase BED34_02105 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_02135 PF02371 Transposase IS116/IS110/IS902 family BED34_02135 PF01548 Transposase BED34_02140 PF04204 Homoserine O-succinyltransferase BED34_02145 PF01274 Malate synthase BED34_02150 PF00463 Isocitrate lyase family BED34_02155 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BED34_02160 PF01614 Bacterial transcriptional regulator BED34_02160 PF09339 IclR helix-turn-helix domain BED34_02165 PF00809 Pterin binding enzyme BED34_02165 PF02607 B12 binding domain BED34_02165 PF02310 B12 binding domain BED34_02165 PF02965 Vitamin B12 dependent methionine synthase, activation domain BED34_02165 PF02574 Homocysteine S-methyltransferase BED34_02170 PF05860 haemagglutination activity domain BED34_02170 PF13332 Hemagglutinin repeat BED34_02175 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED34_02175 PF17287 POTRA domain BED34_02175 PF08479 POTRA domain, ShlB-type BED34_02180 PF01758 Sodium Bile acid symporter family BED34_02185 PF00696 Amino acid kinase family BED34_02185 PF01842 ACT domain BED34_02190 PF00342 Phosphoglucose isomerase BED34_02195 PF06146 Phosphate-starvation-inducible E BED34_02200 PF01548 Transposase BED34_02200 PF02371 Transposase IS116/IS110/IS902 family BED34_02205 PF00528 Binding-protein-dependent transport system inner membrane component BED34_02215 PF01547 Bacterial extracellular solute-binding protein BED34_02220 PF00005 ABC transporter BED34_02220 PF17912 MalK OB fold domain BED34_02225 PF02264 LamB porin BED34_02230 PF07148 Maltose operon periplasmic protein precursor (MalM) BED34_02240 PF04345 Chorismate lyase BED34_02245 PF01040 UbiA prenyltransferase family BED34_02250 PF01553 Acyltransferase BED34_02255 PF01219 Prokaryotic diacylglycerol kinase BED34_02260 PF00717 Peptidase S24-like BED34_02260 PF01726 LexA DNA binding domain BED34_02265 PF05532 CsbD-like BED34_02270 PF01475 Ferric uptake regulator family BED34_02275 PF01757 Acyltransferase family BED34_02280 PF01207 Dihydrouridine synthase (Dus) BED34_02285 PF09583 Phage shock protein G (Phageshock_PspG) BED34_02295 PF08240 Alcohol dehydrogenase GroES-like domain BED34_02295 PF00107 Zinc-binding dehydrogenase BED34_02300 PF00772 DnaB-like helicase N terminal domain BED34_02300 PF03796 DnaB-like helicase C terminal domain BED34_02310 PF00155 Aminotransferase class I and II BED34_02315 PF04237 YjbR BED34_02320 PF00005 ABC transporter BED34_02320 PF17760 UvrA interaction domain BED34_02320 PF17755 UvrA DNA-binding domain BED34_02325 PF00436 Single-strand binding protein family BED34_02330 PF13657 HipA N-terminal domain BED34_02330 PF07804 HipA-like C-terminal domain BED34_02345 PF00860 Permease family BED34_02350 PF00999 Sodium/hydrogen exchanger family BED34_02355 PF03466 LysR substrate binding domain BED34_02355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_02360 PF03788 LrgA family BED34_02370 PF00005 ABC transporter BED34_02375 PF00528 Binding-protein-dependent transport system inner membrane component BED34_02380 PF00528 Binding-protein-dependent transport system inner membrane component BED34_02385 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_02395 PF01548 Transposase BED34_02395 PF02371 Transposase IS116/IS110/IS902 family BED34_02400 PF03279 Bacterial lipid A biosynthesis acyltransferase BED34_02405 PF00939 Sodium:sulfate symporter transmembrane region BED34_02410 PF00313 'Cold-shock' DNA-binding domain BED34_02415 PF00313 'Cold-shock' DNA-binding domain BED34_02420 PF05433 Glycine zipper 2TM domain BED34_02430 PF02954 Bacterial regulatory protein, Fis family BED34_02435 PF01207 Dihydrouridine synthase (Dus) BED34_02445 PF00474 Sodium:solute symporter family BED34_02450 PF06196 Protein of unknown function (DUF997) BED34_02455 PF02785 Biotin carboxylase C-terminal domain BED34_02455 PF00289 Biotin carboxylase, N-terminal domain BED34_02455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED34_02460 PF00364 Biotin-requiring enzyme BED34_02465 PF01220 Dehydroquinase class II BED34_02470 PF01794 Ferric reductase like transmembrane component BED34_02475 PF00174 Oxidoreductase molybdopterin binding domain BED34_02480 PF08240 Alcohol dehydrogenase GroES-like domain BED34_02480 PF00107 Zinc-binding dehydrogenase BED34_02485 PF00563 EAL domain BED34_02485 PF17157 Gammaproteobacterial periplasmic sensor domain BED34_02485 PF00990 Diguanylate cyclase, GGDEF domain BED34_02495 PF04085 rod shape-determining protein MreC BED34_02500 PF04093 rod shape-determining protein MreD BED34_02505 PF02545 Maf-like protein BED34_02510 PF10150 Ribonuclease E/G family BED34_02510 PF00575 S1 RNA binding domain BED34_02515 PF13116 Protein of unknown function BED34_02515 PF13502 AsmA-like C-terminal region BED34_02520 PF00795 Carbon-nitrogen hydrolase BED34_02525 PF01523 Putative modulator of DNA gyrase BED34_02560 PF03534 Salmonella virulence plasmid 65kDa B protein BED34_02560 PF12255 Insecticide toxin TcdB middle/C-terminal region BED34_02560 PF12256 Insecticide toxin TcdB middle/N-terminal region BED34_02565 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain BED34_02565 PF18413 Neuraminidase-like domain BED34_02580 PF03466 LysR substrate binding domain BED34_02580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_02585 PF07869 Protein of unknown function (DUF1656) BED34_02590 PF13533 Biotin-lipoyl like BED34_02595 PF04632 Fusaric acid resistance protein family BED34_02600 PF00171 Aldehyde dehydrogenase family BED34_02610 PF01337 Barstar (barnase inhibitor) BED34_02615 PF04751 Protein of unknown function (DUF615) BED34_02620 PF02899 Phage integrase, N-terminal SAM-like domain BED34_02620 PF00589 Phage integrase family BED34_02650 PF02086 D12 class N6 adenine-specific DNA methyltransferase BED34_02660 PF05840 Bacteriophage replication gene A protein (GPA) BED34_02795 PF01523 Putative modulator of DNA gyrase BED34_02800 PF01548 Transposase BED34_02800 PF02371 Transposase IS116/IS110/IS902 family BED34_02805 PF07361 Cytochrome b562 BED34_02810 PF01272 Transcription elongation factor, GreA/GreB, C-term BED34_02810 PF14760 Rnk N-terminus BED34_02840 PF01979 Amidohydrolase family BED34_02845 PF03841 L-seryl-tRNA selenium transferase BED34_02850 PF07071 KDGP aldolase BED34_02860 PF08279 HTH domain BED34_02860 PF05043 Mga helix-turn-helix domain BED34_02860 PF00874 PRD domain BED34_02860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_02865 PF01381 Helix-turn-helix BED34_02870 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BED34_02880 PF00356 Bacterial regulatory proteins, lacI family BED34_02890 PF00128 Alpha amylase, catalytic domain BED34_02890 PF11941 Domain of unknown function (DUF3459) BED34_02905 PF04168 A predicted alpha-helical domain with a conserved ER motif. BED34_02905 PF14403 Circularly permuted ATP-grasp type 2 BED34_02910 PF14403 Circularly permuted ATP-grasp type 2 BED34_02915 PF01042 Endoribonuclease L-PSP BED34_02920 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BED34_02920 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BED34_02925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED34_02925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED34_02930 PF00381 PTS HPr component phosphorylation site BED34_02935 PF03668 P-loop ATPase protein family BED34_02940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_02945 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED34_02950 PF00309 Sigma-54 factor, Activator interacting domain (AID) BED34_02950 PF04963 Sigma-54 factor, core binding domain BED34_02950 PF04552 Sigma-54, DNA binding domain BED34_02955 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED34_02955 PF00005 ABC transporter BED34_02960 PF03968 OstA-like protein BED34_02965 PF06835 Lipopolysaccharide-assembly, LptC-related BED34_02975 PF00571 CBS domain BED34_02975 PF01380 SIS domain BED34_02985 PF00005 ABC transporter BED34_02990 PF02405 Permease MlaE BED34_02995 PF02470 MlaD protein BED34_03000 PF05494 MlaC protein BED34_03005 PF13466 STAS domain BED34_03010 PF01722 BolA-like protein BED34_03015 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED34_03020 PF13180 PDZ domain BED34_03025 PF13180 PDZ domain BED34_03025 PF00595 PDZ domain BED34_03030 PF06295 Protein of unknown function (DUF1043) BED34_03035 PF03969 AFG1-like ATPase BED34_03040 PF00572 Ribosomal protein L13 BED34_03045 PF00380 Ribosomal protein S9/S16 BED34_03050 PF02798 Glutathione S-transferase, N-terminal domain BED34_03050 PF00043 Glutathione S-transferase, C-terminal domain BED34_03055 PF04386 Stringent starvation protein B BED34_03070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BED34_03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_03075 PF01645 Conserved region in glutamate synthase BED34_03075 PF04898 Glutamate synthase central domain BED34_03075 PF00310 Glutamine amidotransferases class-II BED34_03075 PF01493 GXGXG motif BED34_03080 PF16199 Radical_SAM C-terminal domain BED34_03080 PF04055 Radical SAM superfamily BED34_03085 PF00072 Response regulator receiver domain BED34_03085 PF00989 PAS fold BED34_03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_03085 PF00512 His Kinase A (phospho-acceptor) domain BED34_03085 PF18415 Histidine kinase receptor ArcB trans-membrane domain BED34_03085 PF01627 Hpt domain BED34_03095 PF00912 Transglycosylase BED34_03100 PF04972 BON domain BED34_03105 PF13580 SIS domain BED34_03110 PF02021 Uncharacterised protein family UPF0102 BED34_03115 PF04348 LppC putative lipoprotein BED34_03120 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_03140 PF02796 Helix-turn-helix domain of resolvase BED34_03140 PF00239 Resolvase, N terminal domain BED34_03150 PF00145 C-5 cytosine-specific DNA methylase BED34_03160 PF01381 Helix-turn-helix BED34_03175 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_03175 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_03180 PF13954 PapC N-terminal domain BED34_03180 PF00577 Outer membrane usher protein BED34_03180 PF13953 PapC C-terminal domain BED34_03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_03190 PF03466 LysR substrate binding domain BED34_03195 PF00248 Aldo/keto reductase family BED34_03200 PF08240 Alcohol dehydrogenase GroES-like domain BED34_03200 PF00107 Zinc-binding dehydrogenase BED34_03205 PF02678 Pirin BED34_03205 PF17954 Quercetinase C-terminal cupin domain BED34_03210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_03210 PF03466 LysR substrate binding domain BED34_03215 PF13409 Glutathione S-transferase, N-terminal domain BED34_03220 PF07681 DoxX BED34_03225 PF13997 YqjK-like protein BED34_03230 PF07332 Putative Actinobacterial Holin-X, holin superfamily III BED34_03235 PF05957 Bacterial protein of unknown function (DUF883) BED34_03245 PF13721 SecD export protein N-terminal TM region BED34_03250 PF09335 SNARE associated Golgi protein BED34_03260 PF07729 FCD domain BED34_03260 PF00392 Bacterial regulatory proteins, gntR family BED34_03265 PF07690 Major Facilitator Superfamily BED34_03270 PF02614 Glucuronate isomerase BED34_03275 PF08125 Mannitol dehydrogenase C-terminal domain BED34_03275 PF01232 Mannitol dehydrogenase Rossmann domain BED34_03280 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BED34_03280 PF08666 SAF domain BED34_03285 PF10688 Bacterial inner membrane protein BED34_03290 PF00375 Sodium:dicarboxylate symporter family BED34_03295 PF03741 Integral membrane protein TerC family BED34_03305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED34_03310 PF01863 Protein of unknown function DUF45 BED34_03325 PF03797 Autotransporter beta-domain BED34_03330 PF05175 Methyltransferase small domain BED34_03335 PF02371 Transposase IS116/IS110/IS902 family BED34_03335 PF01548 Transposase BED34_03340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BED34_03340 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_03345 PF00892 EamA-like transporter family BED34_03350 PF03729 Short repeat of unknown function (DUF308) BED34_03360 PF00282 Pyridoxal-dependent decarboxylase conserved domain BED34_03365 PF13520 Amino acid permease BED34_03370 PF04960 Glutaminase BED34_03380 PF00872 Transposase, Mutator family BED34_03385 PF00367 phosphotransferase system, EIIB BED34_03385 PF02378 Phosphotransferase system, EIIC BED34_03390 PF13580 SIS domain BED34_03395 PF01418 Helix-turn-helix domain, rpiR family BED34_03395 PF01380 SIS domain BED34_03400 PF00933 Glycosyl hydrolase family 3 N terminal domain BED34_03400 PF01915 Glycosyl hydrolase family 3 C-terminal domain BED34_03410 PF07075 Protein of unknown function (DUF1343) BED34_03420 PF02371 Transposase IS116/IS110/IS902 family BED34_03420 PF01548 Transposase BED34_03425 PF04539 Sigma-70 region 3 BED34_03425 PF04546 Sigma-70, non-essential region BED34_03425 PF04545 Sigma-70, region 4 BED34_03425 PF00140 Sigma-70 factor, region 1.2 BED34_03425 PF03979 Sigma-70 factor, region 1.1 BED34_03425 PF04542 Sigma-70 region 2 BED34_03430 PF10410 DnaB-helicase binding domain of primase BED34_03430 PF08278 DNA primase DnaG DnaB-binding BED34_03430 PF01807 CHC2 zinc finger BED34_03430 PF08275 DNA primase catalytic core, N-terminal domain BED34_03435 PF01165 Ribosomal protein S21 BED34_03440 PF00814 Glycoprotease family BED34_03445 PF02660 Glycerol-3-phosphate acyltransferase BED34_03450 PF02152 Dihydroneopterin aldolase BED34_03455 PF02673 Bacitracin resistance protein BacA BED34_03460 PF01743 Poly A polymerase head domain BED34_03460 PF01966 HD domain BED34_03460 PF12627 Probable RNA and SrmB- binding site of polymerase A BED34_03465 PF08239 Bacterial SH3 domain BED34_03470 PF01928 CYTH domain BED34_03475 PF08335 GlnD PII-uridylyltransferase BED34_03475 PF03710 Glutamate-ammonia ligase adenylyltransferase BED34_03480 PF01467 Cytidylyltransferase-like BED34_03480 PF00294 pfkB family carbohydrate kinase BED34_03485 PF13520 Amino acid permease BED34_03490 PF04380 Membrane fusogenic activity BED34_03495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BED34_03500 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BED34_03505 PF03738 Glutathionylspermidine synthase preATP-grasp BED34_03510 PF06693 Protein of unknown function (DUF1190) BED34_03520 PF02321 Outer membrane efflux protein BED34_03525 PF00293 NUDIX domain BED34_03530 PF06853 Protein of unknown function (DUF1249) BED34_03535 PF00149 Calcineurin-like phosphoesterase BED34_03540 PF05728 Uncharacterised protein family (UPF0227) BED34_03545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_03545 PF01751 Toprim domain BED34_03545 PF00986 DNA gyrase B subunit, carboxyl terminus BED34_03545 PF00204 DNA gyrase B BED34_03550 PF03466 LysR substrate binding domain BED34_03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_03555 PF03992 Antibiotic biosynthesis monooxygenase BED34_03560 PF02525 Flavodoxin-like fold BED34_03565 PF00521 DNA gyrase/topoisomerase IV, subunit A BED34_03565 PF03989 DNA gyrase C-terminal domain, beta-propeller BED34_03570 PF01553 Acyltransferase BED34_03575 PF07732 Multicopper oxidase BED34_03575 PF07731 Multicopper oxidase BED34_03580 PF04055 Radical SAM superfamily BED34_03580 PF11842 Domain of unknown function (DUF3362) BED34_03580 PF08497 Radical SAM N-terminal BED34_03585 PF00248 Aldo/keto reductase family BED34_03590 PF00465 Iron-containing alcohol dehydrogenase BED34_03595 PF12833 Helix-turn-helix domain BED34_03595 PF06719 AraC-type transcriptional regulator N-terminus BED34_03600 PF09335 SNARE associated Golgi protein BED34_03605 PF01053 Cys/Met metabolism PLP-dependent enzyme BED34_03610 PF01618 MotA/TolQ/ExbB proton channel family BED34_03615 PF02472 Biopolymer transport protein ExbD/TolR BED34_03650 PF00437 Type II/IV secretion system protein BED34_03665 PF00263 Bacterial type II and III secretion system protein BED34_03665 PF13629 Pilus formation protein N terminal region BED34_03665 PF04972 BON domain BED34_03690 PF13532 2OG-Fe(II) oxygenase superfamily BED34_03695 PF00873 AcrB/AcrD/AcrF family BED34_03705 PF02586 SOS response associated peptidase (SRAP) BED34_03720 PF12833 Helix-turn-helix domain BED34_03725 PF01527 Transposase BED34_03745 PF12704 MacB-like periplasmic core domain BED34_03745 PF02687 FtsX-like permease family BED34_03745 PF00005 ABC transporter BED34_03750 PF12833 Helix-turn-helix domain BED34_03760 PF13276 HTH-like domain BED34_03760 PF00665 Integrase core domain BED34_03760 PF13333 Integrase core domain BED34_03775 PF11806 Domain of unknown function (DUF3327) BED34_03775 PF00756 Putative esterase BED34_03780 PF00005 ABC transporter BED34_03785 PF01032 FecCD transport family BED34_03790 PF01032 FecCD transport family BED34_03795 PF01497 Periplasmic binding protein BED34_03805 PF01370 NAD dependent epimerase/dehydratase family BED34_03810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_03810 PF02203 Tar ligand binding domain homologue BED34_03810 PF00672 HAMP domain BED34_03820 PF00771 FHIPEP family BED34_03825 PF01312 FlhB HrpN YscU SpaS Family BED34_03830 PF01311 Bacterial export proteins, family 1 BED34_03835 PF01313 Bacterial export proteins, family 3 BED34_03840 PF00813 FliP family BED34_03845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED34_03855 PF00072 Response regulator receiver domain BED34_03855 PF00158 Sigma-54 interaction domain BED34_03855 PF02954 Bacterial regulatory protein, Fis family BED34_03860 PF02049 Flagellar hook-basal body complex protein FliE BED34_03880 PF18269 T3SS EscN ATPase C-terminal domain BED34_03880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_03905 PF00460 Flagella basal body rod protein BED34_03910 PF00460 Flagella basal body rod protein BED34_03910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_03915 PF03963 Flagellar hook capping protein - N-terminal region BED34_03915 PF13860 FlgD Ig-like domain BED34_03915 PF13861 FlgD Tudor-like domain BED34_03920 PF07559 Flagellar basal body protein FlaE BED34_03920 PF00460 Flagella basal body rod protein BED34_03920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_03925 PF00460 Flagella basal body rod protein BED34_03925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_03930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_03930 PF00460 Flagella basal body rod protein BED34_03935 PF02107 Flagellar L-ring protein BED34_03940 PF02119 Flagellar P-ring protein BED34_03975 PF00700 Bacterial flagellin C-terminal helical region BED34_03975 PF00669 Bacterial flagellin N-terminal helical region BED34_03985 PF02561 Flagellar protein FliS BED34_04005 PF04542 Sigma-70 region 2 BED34_04005 PF04545 Sigma-70, region 4 BED34_04010 PF01618 MotA/TolQ/ExbB proton channel family BED34_04015 PF13677 Membrane MotB of proton-channel complex MotA/MotB BED34_04015 PF00691 OmpA family BED34_04020 PF05433 Glycine zipper 2TM domain BED34_04025 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED34_04025 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BED34_04030 PF13247 4Fe-4S dicluster domain BED34_04035 PF03916 Polysulphide reductase, NrfD BED34_04040 PF00374 Nickel-dependent hydrogenase BED34_04045 PF01750 Hydrogenase maturation protease BED34_04050 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE BED34_04055 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BED34_04060 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED34_04065 PF01455 HupF/HypC family BED34_04070 PF01924 Hydrogenase formation hypA family BED34_04075 PF02769 AIR synthase related protein, C-terminal domain BED34_04075 PF00586 AIR synthase related protein, N-terminal domain BED34_04080 PF00708 Acylphosphatase BED34_04080 PF07503 HypF finger BED34_04080 PF01300 Telomere recombination BED34_04080 PF17788 HypF Kae1-like domain BED34_04085 PF13784 Fic/DOC family N-terminal BED34_04085 PF02661 Fic/DOC family BED34_04090 PF02110 Hydroxyethylthiazole kinase family BED34_04105 PF08448 PAS fold BED34_04105 PF00990 Diguanylate cyclase, GGDEF domain BED34_04105 PF08447 PAS fold BED34_04105 PF00563 EAL domain BED34_04110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_04125 PF08946 Osmosensory transporter coiled coil BED34_04125 PF00083 Sugar (and other) transporter BED34_04140 PF02690 Na+/Pi-cotransporter BED34_04145 PF01156 Inosine-uridine preferring nucleoside hydrolase BED34_04150 PF00356 Bacterial regulatory proteins, lacI family BED34_04155 PF02371 Transposase IS116/IS110/IS902 family BED34_04155 PF01548 Transposase BED34_04160 PF00083 Sugar (and other) transporter BED34_04160 PF07690 Major Facilitator Superfamily BED34_04170 PF00392 Bacterial regulatory proteins, gntR family BED34_04170 PF00155 Aminotransferase class I and II BED34_04190 PF01497 Periplasmic binding protein BED34_04195 PF01032 FecCD transport family BED34_04200 PF01032 FecCD transport family BED34_04210 PF00557 Metallopeptidase family M24 BED34_04230 PF00529 HlyD membrane-fusion protein of T1SS BED34_04230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_04235 PF04632 Fusaric acid resistance protein family BED34_04245 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED34_04245 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED34_04245 PF01276 Orn/Lys/Arg decarboxylase, major domain BED34_04250 PF13520 Amino acid permease BED34_04270 PF03811 InsA N-terminal domain BED34_04270 PF12759 InsA C-terminal domain BED34_04290 PF00589 Phage integrase family BED34_04305 PF01276 Orn/Lys/Arg decarboxylase, major domain BED34_04305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED34_04305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED34_04315 PF01464 Transglycosylase SLT domain BED34_04315 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BED34_04320 PF04362 Bacterial Fe(2+) trafficking BED34_04325 PF00633 Helix-hairpin-helix motif BED34_04325 PF10576 Iron-sulfur binding domain of endonuclease III BED34_04325 PF00730 HhH-GPD superfamily base excision DNA repair protein BED34_04325 PF14815 NUDIX domain BED34_04330 PF02390 Putative methyltransferase BED34_04335 PF04320 Protein with unknown function (DUF469) BED34_04340 PF04960 Glutaminase BED34_04345 PF11101 Protein of unknown function (DUF2884) BED34_04350 PF04055 Radical SAM superfamily BED34_04350 PF06969 HemN C-terminal domain BED34_04355 PF01725 Ham1 family BED34_04360 PF02594 Uncharacterised ACR, YggU family COG1872 BED34_04365 PF02325 YGGT family BED34_04370 PF03807 NADP oxidoreductase coenzyme F420-dependent BED34_04370 PF14748 Pyrroline-5-carboxylate reductase dimerisation BED34_04375 PF01168 Alanine racemase, N-terminal domain BED34_04380 PF00437 Type II/IV secretion system protein BED34_04385 PF04371 Porphyromonas-type peptidyl-arginine deiminase BED34_04390 PF00795 Carbon-nitrogen hydrolase BED34_04395 PF03652 Holliday junction resolvase BED34_04400 PF02622 Uncharacterized ACR, COG1678 BED34_04405 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BED34_04405 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BED34_04410 PF04452 RNA methyltransferase BED34_04415 PF04231 Endonuclease I BED34_04420 PF17283 SprT-like zinc ribbon domain BED34_04420 PF10263 SprT-like family BED34_04430 PF00872 Transposase, Mutator family BED34_04435 PF04143 Sulphur transport BED34_04445 PF02772 S-adenosylmethionine synthetase, central domain BED34_04445 PF00438 S-adenosylmethionine synthetase, N-terminal domain BED34_04445 PF02773 S-adenosylmethionine synthetase, C-terminal domain BED34_04450 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED34_04450 PF17944 Arginine decarboxylase C-terminal helical extension BED34_04450 PF17810 Arginine decarboxylase helical bundle domain BED34_04455 PF00355 Rieske [2Fe-2S] domain BED34_04460 PF01435 Peptidase family M48 BED34_04465 PF02779 Transketolase, pyrimidine binding domain BED34_04465 PF00456 Transketolase, thiamine diphosphate binding domain BED34_04465 PF02780 Transketolase, C-terminal domain BED34_04470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED34_04470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED34_04475 PF00162 Phosphoglycerate kinase BED34_04480 PF01116 Fructose-bisphosphate aldolase class-II BED34_04485 PF00102 Protein-tyrosine phosphatase BED34_04485 PF09013 YopH, N-terminal BED34_04490 PF05552 Conserved TM helix BED34_04490 PF00924 Mechanosensitive ion channel BED34_04495 PF02371 Transposase IS116/IS110/IS902 family BED34_04495 PF01548 Transposase BED34_04500 PF01810 LysE type translocator BED34_04505 PF04402 Protein of unknown function (DUF541) BED34_04515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BED34_04520 PF01842 ACT domain BED34_04520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED34_04520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED34_04555 PF04055 Radical SAM superfamily BED34_04575 PF01242 6-pyruvoyl tetrahydropterin synthase BED34_04580 PF00258 Flavodoxin BED34_04580 PF00667 FAD binding domain BED34_04580 PF00175 Oxidoreductase NAD-binding domain BED34_04585 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BED34_04585 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BED34_04590 PF01507 Phosphoadenosine phosphosulfate reductase family BED34_04605 PF04389 Peptidase family M28 BED34_04610 PF10414 Sirohaem synthase dimerisation region BED34_04610 PF14824 Sirohaem biosynthesis protein central BED34_04610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_04615 PF01507 Phosphoadenosine phosphosulfate reductase family BED34_04620 PF00009 Elongation factor Tu GTP binding domain BED34_04630 PF12084 Protein of unknown function (DUF3561) BED34_04635 PF04977 Septum formation initiator BED34_04640 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BED34_04645 PF02542 YgbB family BED34_04650 PF01142 tRNA pseudouridine synthase D (TruD) BED34_04655 PF01975 Survival protein SurE BED34_04665 PF01551 Peptidase family M23 BED34_04665 PF01476 LysM domain BED34_04670 PF04539 Sigma-70 region 3 BED34_04670 PF04542 Sigma-70 region 2 BED34_04670 PF00140 Sigma-70 factor, region 1.2 BED34_04670 PF04545 Sigma-70, region 4 BED34_04675 PF01624 MutS domain I BED34_04675 PF05192 MutS domain III BED34_04675 PF05190 MutS family domain IV BED34_04675 PF00488 MutS domain V BED34_04675 PF05188 MutS domain II BED34_04690 PF00419 Fimbrial protein BED34_04695 PF00419 Fimbrial protein BED34_04700 PF13954 PapC N-terminal domain BED34_04700 PF13953 PapC C-terminal domain BED34_04700 PF00577 Outer membrane usher protein BED34_04705 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_04705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_04715 PF00419 Fimbrial protein BED34_04720 PF00419 Fimbrial protein BED34_04745 PF03412 Peptidase C39 family BED34_04745 PF00005 ABC transporter BED34_04745 PF00664 ABC transporter transmembrane region BED34_04750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_04755 PF00005 ABC transporter BED34_04755 PF12704 MacB-like periplasmic core domain BED34_04755 PF02687 FtsX-like permease family BED34_04760 PF02321 Outer membrane efflux protein BED34_04765 PF02801 Beta-ketoacyl synthase, C-terminal domain BED34_04765 PF00109 Beta-ketoacyl synthase, N-terminal domain BED34_04785 PF00155 Aminotransferase class I and II BED34_04790 PF14376 Haem-binding domain BED34_04790 PF03150 Di-haem cytochrome c peroxidase BED34_04790 PF00034 Cytochrome c BED34_04800 PF03764 Elongation factor G, domain IV BED34_04800 PF00679 Elongation factor G C-terminus BED34_04800 PF03144 Elongation factor Tu domain 2 BED34_04800 PF14492 Elongation Factor G, domain II BED34_04800 PF00009 Elongation factor Tu GTP binding domain BED34_04805 PF01022 Bacterial regulatory protein, arsR family BED34_04810 PF00107 Zinc-binding dehydrogenase BED34_04810 PF08240 Alcohol dehydrogenase GroES-like domain BED34_04815 PF03613 PTS system mannose/fructose/sorbose family IID component BED34_04820 PF03609 PTS system sorbose-specific iic component BED34_04830 PF03610 PTS system fructose IIA component BED34_04835 PF04198 Putative sugar-binding domain BED34_04835 PF13936 Helix-turn-helix domain BED34_04840 PF00795 Carbon-nitrogen hydrolase BED34_04860 PF00005 ABC transporter BED34_04865 PF00005 ABC transporter BED34_04870 PF11862 Domain of unknown function (DUF3382) BED34_04870 PF02653 Branched-chain amino acid transport system / permease component BED34_04875 PF02653 Branched-chain amino acid transport system / permease component BED34_04880 PF13458 Periplasmic binding protein BED34_04885 PF05683 Fumarase C-terminus BED34_04885 PF05681 Fumarate hydratase (Fumerase) BED34_04890 PF01568 Molydopterin dinucleotide binding domain BED34_04890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED34_04890 PF00384 Molybdopterin oxidoreductase BED34_04895 PF13247 4Fe-4S dicluster domain BED34_04895 PF12800 4Fe-4S binding domain BED34_04900 PF04976 DMSO reductase anchor subunit (DmsC) BED34_04905 PF02613 Nitrate reductase delta subunit BED34_04910 PF02371 Transposase IS116/IS110/IS902 family BED34_04910 PF01548 Transposase BED34_04915 PF07690 Major Facilitator Superfamily BED34_04920 PF02464 Competence-damaged protein BED34_04925 PF00154 recA bacterial DNA recombination protein BED34_04930 PF02631 RecX family BED34_04935 PF01411 tRNA synthetases class II (A) BED34_04935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED34_04935 PF02272 DHHA1 domain BED34_04940 PF02599 Global regulator protein family BED34_04960 PF13419 Haloacid dehalogenase-like hydrolase BED34_04970 PF04262 Glutamate-cysteine ligase BED34_04975 PF02664 S-Ribosylhomocysteinase (LuxS) BED34_04980 PF01595 Cyclin M transmembrane N-terminal domain BED34_04980 PF03471 Transporter associated domain BED34_04980 PF00571 CBS domain BED34_04985 PF02371 Transposase IS116/IS110/IS902 family BED34_04985 PF01548 Transposase BED34_04995 PF01578 Cytochrome C assembly protein BED34_05000 PF00448 SRP54-type protein, GTPase domain BED34_05000 PF02881 SRP54-type protein, helical bundle domain BED34_05000 PF02978 Signal peptide binding domain BED34_05005 PF00886 Ribosomal protein S16 BED34_05010 PF01782 RimM N-terminal domain BED34_05010 PF05239 PRC-barrel domain BED34_05015 PF01746 tRNA (Guanine-1)-methyltransferase BED34_05020 PF01245 Ribosomal protein L19 BED34_05030 PF03605 Anaerobic c4-dicarboxylate membrane transporter BED34_05035 PF00072 Response regulator receiver domain BED34_05035 PF04397 LytTr DNA-binding domain BED34_05040 PF00793 DAHP synthetase I family BED34_05045 PF02153 Prephenate dehydrogenase BED34_05045 PF01817 Chorismate mutase type II BED34_05050 PF01817 Chorismate mutase type II BED34_05050 PF00800 Prephenate dehydratase BED34_05055 PF01548 Transposase BED34_05055 PF02371 Transposase IS116/IS110/IS902 family BED34_05060 PF07724 AAA domain (Cdc48 subfamily) BED34_05060 PF00004 ATPase family associated with various cellular activities (AAA) BED34_05060 PF17871 AAA lid domain BED34_05060 PF02861 Clp amino terminal domain, pathogenicity island component BED34_05060 PF10431 C-terminal, D2-small domain, of ClpB protein BED34_05070 PF00849 RNA pseudouridylate synthase BED34_05070 PF01479 S4 domain BED34_05075 PF13525 Outer membrane lipoprotein BED34_05085 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BED34_05090 PF00872 Transposase, Mutator family BED34_05095 PF01548 Transposase BED34_05095 PF02371 Transposase IS116/IS110/IS902 family BED34_05125 PF10043 Predicted periplasmic lipoprotein (DUF2279) BED34_05130 PF13091 PLD-like domain BED34_05135 PF13380 CoA binding domain BED34_05135 PF13607 Succinyl-CoA ligase like flavodoxin domain BED34_05135 PF00583 Acetyltransferase (GNAT) family BED34_05145 PF00085 Thioredoxin BED34_05150 PF00588 SpoU rRNA Methylase family BED34_05150 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED34_05155 PF07690 Major Facilitator Superfamily BED34_05160 PF00529 HlyD membrane-fusion protein of T1SS BED34_05160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_05165 PF02321 Outer membrane efflux protein BED34_05170 PF01047 MarR family BED34_05175 PF05437 Branched-chain amino acid transport protein (AzlD) BED34_05180 PF03591 AzlC protein BED34_05185 PF07690 Major Facilitator Superfamily BED34_05200 PF01425 Amidase BED34_05215 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_05220 PF00528 Binding-protein-dependent transport system inner membrane component BED34_05225 PF00528 Binding-protein-dependent transport system inner membrane component BED34_05230 PF00005 ABC transporter BED34_05245 PF00795 Carbon-nitrogen hydrolase BED34_05250 PF00155 Aminotransferase class I and II BED34_05255 PF00589 Phage integrase family BED34_05255 PF12167 Arm DNA-binding domain BED34_05265 PF05063 MT-A70 BED34_05310 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED34_05310 PF06630 Enterobacterial exodeoxyribonuclease VIII BED34_05390 PF01695 IstB-like ATP binding protein BED34_05425 PF07102 Protein of unknown function (DUF1364) BED34_05430 PF05866 Endodeoxyribonuclease RusA BED34_05460 PF03245 Bacteriophage Rz lysis protein BED34_05625 PF00596 Class II Aldolase and Adducin N-terminal domain BED34_05635 PF03079 ARD/ARD' family BED34_05640 PF01008 Initiation factor 2 subunit family BED34_05645 PF01636 Phosphotransferase enzyme family BED34_05650 PF08479 POTRA domain, ShlB-type BED34_05650 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BED34_05665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED34_05665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BED34_05665 PF09317 Domain of unknown function (DUF1974) BED34_05670 PF13580 SIS domain BED34_05675 PF13230 Glutamine amidotransferases class-II BED34_05680 PF03734 L,D-transpeptidase catalytic domain BED34_05685 PF11973 NQRA C-terminal domain BED34_05685 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BED34_05690 PF03116 NQR2, RnfD, RnfE family BED34_05695 PF04205 FMN-binding domain BED34_05700 PF02508 Rnf-Nqr subunit, membrane protein BED34_05710 PF00175 Oxidoreductase NAD-binding domain BED34_05710 PF00111 2Fe-2S iron-sulfur cluster binding domain BED34_05710 PF00970 Oxidoreductase FAD-binding domain BED34_05715 PF02424 ApbE family BED34_05720 PF04400 (Na+)-NQR maturation NqrM BED34_05725 PF03009 Glycerophosphoryl diester phosphodiesterase family BED34_05730 PF01820 D-ala D-ala ligase N-terminus BED34_05730 PF07478 D-ala D-ala ligase C-terminus BED34_05735 PF13309 HTH domain BED34_05735 PF08348 YheO-like PAS domain BED34_05740 PF00291 Pyridoxal-phosphate dependent enzyme BED34_05750 PF00817 impB/mucB/samB family BED34_05750 PF11799 impB/mucB/samB family C-terminal domain BED34_05750 PF11798 IMS family HHH motif BED34_05755 PF07687 Peptidase dimerisation domain BED34_05755 PF01546 Peptidase family M20/M25/M40 BED34_05760 PF00156 Phosphoribosyl transferase domain BED34_05765 PF01548 Transposase BED34_05765 PF02371 Transposase IS116/IS110/IS902 family BED34_05775 PF07417 Sigma factor-binding transcriptional regulator Crl BED34_05780 PF00696 Amino acid kinase family BED34_05780 PF01472 PUA domain BED34_05785 PF00171 Aldehyde dehydrogenase family BED34_05790 PF07702 UTRA domain BED34_05790 PF00392 Bacterial regulatory proteins, gntR family BED34_05795 PF02378 Phosphotransferase system, EIIC BED34_05795 PF00367 phosphotransferase system, EIIB BED34_05800 PF11975 Family 4 glycosyl hydrolase C-terminal domain BED34_05800 PF02056 Family 4 glycosyl hydrolase BED34_05805 PF07317 Flagellar regulator YcgR BED34_05805 PF07238 PilZ domain BED34_05810 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain BED34_05810 PF06165 Glycosyltransferase family 36 BED34_05810 PF10091 Putative glucoamylase BED34_05825 PF08241 Methyltransferase domain BED34_05845 PF07715 TonB-dependent Receptor Plug Domain BED34_05845 PF00593 TonB dependent receptor BED34_05850 PF01202 Shikimate kinase BED34_05855 PF06865 Pyrimidine/purine nucleoside phosphorylase BED34_05860 PF04381 Putative exonuclease, RdgC BED34_05865 PF00480 ROK family BED34_05870 PF13476 AAA domain BED34_05875 PF00149 Calcineurin-like phosphoesterase BED34_05875 PF12320 Type 5 capsule protein repressor C-terminal domain BED34_05880 PF00072 Response regulator receiver domain BED34_05880 PF00486 Transcriptional regulatory protein, C terminal BED34_05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_05885 PF00512 His Kinase A (phospho-acceptor) domain BED34_05885 PF00989 PAS fold BED34_05885 PF11808 Phosphate regulon sensor protein PhoR BED34_05890 PF12849 PBP superfamily domain BED34_05895 PF05525 Branched-chain amino acid transport protein BED34_05900 PF00324 Amino acid permease BED34_05905 PF00128 Alpha amylase, catalytic domain BED34_05905 PF02903 Alpha amylase, N-terminal ig-like domain BED34_05920 PF01848 Hok/gef family BED34_05925 PF10417 C-terminal domain of 1-Cys peroxiredoxin BED34_05925 PF00578 AhpC/TSA family BED34_05930 PF04336 Acyl carrier protein phosphodiesterase BED34_05935 PF02547 Queuosine biosynthesis protein BED34_05945 PF01702 Queuine tRNA-ribosyltransferase BED34_05950 PF02699 Preprotein translocase subunit BED34_05955 PF02355 Protein export membrane protein BED34_05955 PF13721 SecD export protein N-terminal TM region BED34_05955 PF07549 SecD/SecF GG Motif BED34_05960 PF02355 Protein export membrane protein BED34_05960 PF07549 SecD/SecF GG Motif BED34_05975 PF03477 ATP cone domain BED34_05980 PF01872 RibD C-terminal domain BED34_05980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED34_05985 PF00885 6,7-dimethyl-8-ribityllumazine synthase BED34_05990 PF01029 NusB family BED34_05995 PF02769 AIR synthase related protein, C-terminal domain BED34_05995 PF00586 AIR synthase related protein, N-terminal domain BED34_06000 PF04608 Phosphatidylglycerophosphatase A BED34_06005 PF01548 Transposase BED34_06005 PF02371 Transposase IS116/IS110/IS902 family BED34_06010 PF02780 Transketolase, C-terminal domain BED34_06010 PF02779 Transketolase, pyrimidine binding domain BED34_06010 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BED34_06015 PF00348 Polyprenyl synthetase BED34_06020 PF02609 Exonuclease VII small subunit BED34_06025 PF02568 Thiamine biosynthesis protein (ThiI) BED34_06025 PF02926 THUMP domain BED34_06030 PF01965 DJ-1/PfpI family BED34_06035 PF02558 Ketopantoate reductase PanE/ApbA BED34_06035 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED34_06040 PF04461 Protein of unknown function (DUF520) BED34_06045 PF07690 Major Facilitator Superfamily BED34_06050 PF01040 UbiA prenyltransferase family BED34_06055 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BED34_06060 PF00510 Cytochrome c oxidase subunit III BED34_06065 PF00115 Cytochrome C and Quinol oxidase polypeptide I BED34_06070 PF06481 COX Aromatic Rich Motif BED34_06070 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BED34_06075 PF03502 Nucleoside-specific channel-forming protein, Tsx BED34_06080 PF07690 Major Facilitator Superfamily BED34_06085 PF03923 Uncharacterized lipoprotein BED34_06085 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED34_06090 PF01722 BolA-like protein BED34_06100 PF05698 Bacterial trigger factor protein (TF) C-terminus BED34_06100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED34_06100 PF05697 Bacterial trigger factor protein (TF) BED34_06105 PF00574 Clp protease BED34_06110 PF06689 ClpX C4-type zinc finger BED34_06110 PF07724 AAA domain (Cdc48 subfamily) BED34_06110 PF10431 C-terminal, D2-small domain, of ClpB protein BED34_06115 PF00004 ATPase family associated with various cellular activities (AAA) BED34_06115 PF05362 Lon protease (S16) C-terminal proteolytic domain BED34_06115 PF02190 ATP-dependent protease La (LON) substrate-binding domain BED34_06120 PF00216 Bacterial DNA-binding protein BED34_06125 PF13145 PPIC-type PPIASE domain BED34_06140 PF06508 Queuosine biosynthesis protein QueC BED34_06145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_06145 PF12793 Sugar transport-related sRNA regulator N-term BED34_06160 PF01037 Lrp/AsnC ligand binding domain BED34_06160 PF13404 AsnC-type helix-turn-helix domain BED34_06165 PF00664 ABC transporter transmembrane region BED34_06165 PF00005 ABC transporter BED34_06170 PF00005 ABC transporter BED34_06170 PF00664 ABC transporter transmembrane region BED34_06175 PF00543 Nitrogen regulatory protein P-II BED34_06180 PF00909 Ammonium Transporter Family BED34_06190 PF09619 Type III secretion system lipoprotein chaperone (YscW) BED34_06195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED34_06205 PF05321 Haemolysin expression modulating protein BED34_06210 PF10757 Biofilm formation regulator YbaJ BED34_06220 PF00005 ABC transporter BED34_06225 PF00950 ABC 3 transport family BED34_06230 PF01297 Zinc-uptake complex component A periplasmic BED34_06235 PF00444 Ribosomal protein L36 BED34_06240 PF01197 Ribosomal protein L31 BED34_06245 PF10797 Protein of unknown function BED34_06250 PF10941 Protein of unknown function DUF2620 BED34_06255 PF01676 Metalloenzyme superfamily BED34_06260 PF01168 Alanine racemase, N-terminal domain BED34_06270 PF00873 AcrB/AcrD/AcrF family BED34_06275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_06275 PF00529 HlyD membrane-fusion protein of T1SS BED34_06280 PF00440 Bacterial regulatory proteins, tetR family BED34_06280 PF08361 MAATS-type transcriptional repressor, C-terminal region BED34_06285 PF02635 DsrE/DsrF-like family BED34_06295 PF10689 Protein of unknown function (DUF2496) BED34_06305 PF04304 Protein of unknown function (DUF454) BED34_06310 PF00156 Phosphoribosyl transferase domain BED34_06315 PF12169 DNA polymerase III subunits gamma and tau domain III BED34_06315 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BED34_06315 PF12170 DNA polymerase III tau subunit V interacting with alpha BED34_06320 PF02575 YbaB/EbfC DNA-binding family BED34_06325 PF13662 Toprim domain BED34_06325 PF02132 RecR protein BED34_06330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_06330 PF00183 Hsp90 protein BED34_06335 PF05191 Adenylate kinase, active site lid BED34_06340 PF00762 Ferrochelatase BED34_06350 PF00535 Glycosyl transferase family 2 BED34_06350 PF01501 Glycosyl transferase family 8 BED34_06355 PF00535 Glycosyl transferase family 2 BED34_06360 PF00534 Glycosyl transferases group 1 BED34_06360 PF13439 Glycosyltransferase Family 4 BED34_06365 PF00534 Glycosyl transferases group 1 BED34_06365 PF13439 Glycosyltransferase Family 4 BED34_06370 PF00953 Glycosyl transferase family 4 BED34_06375 PF02719 Polysaccharide biosynthesis protein BED34_06380 PF13439 Glycosyltransferase Family 4 BED34_06380 PF00534 Glycosyl transferases group 1 BED34_06385 PF16363 GDP-mannose 4,6 dehydratase BED34_06390 PF00294 pfkB family carbohydrate kinase BED34_06395 PF00999 Sodium/hydrogen exchanger family BED34_06395 PF02254 TrkA-N domain BED34_06400 PF07690 Major Facilitator Superfamily BED34_06415 PF04073 Aminoacyl-tRNA editing domain BED34_06420 PF01963 TraB family BED34_06425 PF00403 Heavy-metal-associated domain BED34_06430 PF13411 MerR HTH family regulatory protein BED34_06435 PF01957 NfeD-like C-terminal, partner-binding BED34_06440 PF16200 C-terminal region of band_7 BED34_06440 PF01145 SPFH domain / Band 7 family BED34_06445 PF00085 Thioredoxin BED34_06450 PF00106 short chain dehydrogenase BED34_06455 PF13472 GDSL-like Lipase/Acylhydrolase family BED34_06460 PF00005 ABC transporter BED34_06470 PF02222 ATP-grasp domain BED34_06470 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BED34_06475 PF00731 AIR carboxylase BED34_06480 PF00149 Calcineurin-like phosphoesterase BED34_06485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BED34_06490 PF01406 tRNA synthetases class I (C) catalytic domain BED34_06490 PF09190 DALR domain BED34_06500 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BED34_06500 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BED34_06510 PF00589 Phage integrase family BED34_06515 PF05063 MT-A70 BED34_06560 PF06630 Enterobacterial exodeoxyribonuclease VIII BED34_06560 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED34_06625 PF01695 IstB-like ATP binding protein BED34_06660 PF07102 Protein of unknown function (DUF1364) BED34_06665 PF05866 Endodeoxyribonuclease RusA BED34_06710 PF06440 DNA polymerase III, theta subunit BED34_06785 PF04984 Phage tail sheath protein subtilisin-like domain BED34_06785 PF17482 Phage tail sheath C-terminal domain BED34_06845 PF01757 Acyltransferase family BED34_06850 PF00589 Phage integrase family BED34_06855 PF05063 MT-A70 BED34_06950 PF00717 Peptidase S24-like BED34_06950 PF01381 Helix-turn-helix BED34_06975 PF03796 DnaB-like helicase C terminal domain BED34_06975 PF00772 DnaB-like helicase N terminal domain BED34_07025 PF00149 Calcineurin-like phosphoesterase BED34_07065 PF00959 Phage lysozyme BED34_07070 PF03245 Bacteriophage Rz lysis protein BED34_07230 PF13356 Arm DNA-binding domain BED34_07230 PF00589 Phage integrase family BED34_07230 PF14659 Phage integrase, N-terminal SAM-like domain BED34_07235 PF13356 Arm DNA-binding domain BED34_07235 PF14659 Phage integrase, N-terminal SAM-like domain BED34_07235 PF00589 Phage integrase family BED34_07240 PF13356 Arm DNA-binding domain BED34_07240 PF14659 Phage integrase, N-terminal SAM-like domain BED34_07240 PF00589 Phage integrase family BED34_07255 PF13784 Fic/DOC family N-terminal BED34_07255 PF02661 Fic/DOC family BED34_07310 PF00717 Peptidase S24-like BED34_07320 PF00486 Transcriptional regulatory protein, C terminal BED34_07320 PF00072 Response regulator receiver domain BED34_07330 PF01548 Transposase BED34_07330 PF02371 Transposase IS116/IS110/IS902 family BED34_07340 PF08007 Cupin superfamily protein BED34_07350 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED34_07355 PF00664 ABC transporter transmembrane region BED34_07355 PF00005 ABC transporter BED34_07370 PF00149 Calcineurin-like phosphoesterase BED34_07385 PF00313 'Cold-shock' DNA-binding domain BED34_07390 PF00313 'Cold-shock' DNA-binding domain BED34_07395 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED34_07400 PF00990 Diguanylate cyclase, GGDEF domain BED34_07400 PF05230 MASE2 domain BED34_07405 PF02416 mttA/Hcf106 family BED34_07410 PF04055 Radical SAM superfamily BED34_07410 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BED34_07415 PF03099 Biotin/lipoate A/B protein ligase family BED34_07420 PF04359 Protein of unknown function (DUF493) BED34_07425 PF07943 Penicillin-binding protein 5, C-terminal domain BED34_07425 PF00768 D-alanyl-D-alanine carboxypeptidase BED34_07430 PF03330 Lytic transglycolase BED34_07430 PF05036 Sporulation related domain BED34_07435 PF01098 Cell cycle protein BED34_07440 PF00905 Penicillin binding protein transpeptidase domain BED34_07440 PF03717 Penicillin-binding Protein dimerisation domain BED34_07445 PF02590 Predicted SPOUT methyltransferase BED34_07455 PF01467 Cytidylyltransferase-like BED34_07460 PF06144 DNA polymerase III, delta subunit BED34_07460 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BED34_07465 PF04390 Lipopolysaccharide-assembly BED34_07470 PF00133 tRNA synthetases class I (I, L, M and V) BED34_07470 PF08264 Anticodon-binding domain of tRNA BED34_07470 PF13603 Leucyl-tRNA synthetase, Domain 2 BED34_07475 PF07295 Zinc-ribbon containing domain BED34_07480 PF00005 ABC transporter BED34_07485 PF00528 Binding-protein-dependent transport system inner membrane component BED34_07490 PF00528 Binding-protein-dependent transport system inner membrane component BED34_07495 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_07505 PF00795 Carbon-nitrogen hydrolase BED34_07510 PF03471 Transporter associated domain BED34_07510 PF00571 CBS domain BED34_07520 PF02562 PhoH-like protein BED34_07525 PF00919 Uncharacterized protein family UPF0004 BED34_07525 PF01938 TRAM domain BED34_07525 PF04055 Radical SAM superfamily BED34_07530 PF01494 FAD binding domain BED34_07565 PF13537 Glutamine amidotransferase domain BED34_07565 PF00733 Asparagine synthase BED34_07570 PF13344 Haloacid dehalogenase-like hydrolase BED34_07575 PF00480 ROK family BED34_07575 PF01047 MarR family BED34_07580 PF01979 Amidohydrolase family BED34_07585 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BED34_07595 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BED34_07595 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED34_07600 PF03573 outer membrane porin, OprD family BED34_07605 PF13982 YbfN-like lipoprotein BED34_07610 PF00728 Glycosyl hydrolase family 20, catalytic domain BED34_07610 PF02838 Glycosyl hydrolase family 20, domain 2 BED34_07610 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BED34_07610 PF03173 Putative carbohydrate binding domain BED34_07615 PF01475 Ferric uptake regulator family BED34_07620 PF00258 Flavodoxin BED34_07625 PF02203 Tar ligand binding domain homologue BED34_07625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_07625 PF00672 HAMP domain BED34_07630 PF01402 Ribbon-helix-helix protein, copG family BED34_07635 PF12697 Alpha/beta hydrolase family BED34_07640 PF03925 SeqA protein C-terminal domain BED34_07640 PF17206 SeqA protein N-terminal domain BED34_07645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED34_07645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED34_07645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED34_07645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED34_07655 PF00892 EamA-like transporter family BED34_07660 PF00486 Transcriptional regulatory protein, C terminal BED34_07660 PF00072 Response regulator receiver domain BED34_07670 PF02669 K+-transporting ATPase, c chain BED34_07680 PF03814 Potassium-transporting ATPase A subunit BED34_07685 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) BED34_07690 PF10725 Protein of unknown function (DUF2517) BED34_07700 PF02794 RTX toxin acyltransferase family BED34_07710 PF08349 Protein of unknown function (DUF1722) BED34_07715 PF03441 FAD binding domain of DNA photolyase BED34_07715 PF00875 DNA photolyase BED34_07720 PF02112 cAMP phosphodiesterases class-II BED34_07725 PF01784 NIF3 (NGG1p interacting factor 3) BED34_07730 PF02682 Carboxyltransferase domain, subdomain C and D BED34_07735 PF02626 Carboxyltransferase domain, subdomain A and B BED34_07740 PF03746 LamB/YcsF family BED34_07755 PF01470 Pyroglutamyl peptidase BED34_07760 PF00285 Citrate synthase, C-terminal domain BED34_07765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED34_07770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BED34_07775 PF02910 Fumarate reductase flavoprotein C-term BED34_07775 PF00890 FAD binding domain BED34_07780 PF13085 2Fe-2S iron-sulfur cluster binding domain BED34_07785 PF16078 2-oxoglutarate dehydrogenase N-terminus BED34_07785 PF00676 Dehydrogenase E1 component BED34_07785 PF02779 Transketolase, pyrimidine binding domain BED34_07785 PF16870 2-oxoglutarate dehydrogenase C-terminal BED34_07790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED34_07790 PF02817 e3 binding domain BED34_07790 PF00364 Biotin-requiring enzyme BED34_07795 PF08442 ATP-grasp domain BED34_07795 PF00549 CoA-ligase BED34_07800 PF02629 CoA binding domain BED34_07800 PF00549 CoA-ligase BED34_07805 PF02872 5'-nucleotidase, C-terminal domain BED34_07805 PF00149 Calcineurin-like phosphoesterase BED34_07810 PF01654 Cytochrome bd terminal oxidase subunit I BED34_07815 PF02322 Cytochrome bd terminal oxidase subunit II BED34_07820 PF08173 Membrane bound YbgT-like protein BED34_07825 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BED34_07830 PF03061 Thioesterase superfamily BED34_07835 PF01618 MotA/TolQ/ExbB proton channel family BED34_07840 PF02472 Biopolymer transport protein ExbD/TolR BED34_07845 PF06519 TolA C-terminal BED34_07845 PF06519 TolA C-terminal BED34_07850 PF04052 TolB amino-terminal domain BED34_07850 PF07676 WD40-like Beta Propeller Repeat BED34_07855 PF00691 OmpA family BED34_07860 PF16331 TolA binding protein trimerisation BED34_07860 PF13174 Tetratricopeptide repeat BED34_07885 PF02445 Quinolinate synthetase A protein BED34_07890 PF04973 Nicotinamide mononucleotide transporter BED34_07895 PF01545 Cation efflux family BED34_07900 PF00793 DAHP synthetase I family BED34_07905 PF00300 Histidine phosphatase superfamily (branch 1) BED34_07910 PF01223 DNA/RNA non-specific endonuclease BED34_07930 PF01263 Aldose 1-epimerase BED34_07935 PF10509 Galactokinase galactose-binding signature BED34_07935 PF00288 GHMP kinases N terminal domain BED34_07935 PF08544 GHMP kinases C terminal BED34_07940 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BED34_07940 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BED34_07945 PF16363 GDP-mannose 4,6 dehydratase BED34_07955 PF00005 ABC transporter BED34_07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_07960 PF03459 TOBE domain BED34_07965 PF10766 Multidrug efflux pump-associated protein AcrZ BED34_07975 PF00528 Binding-protein-dependent transport system inner membrane component BED34_07980 PF00005 ABC transporter BED34_07980 PF03459 TOBE domain BED34_07990 PF10282 Lactonase, 7-bladed beta-propeller BED34_07995 PF00202 Aminotransferase class-III BED34_08000 PF04055 Radical SAM superfamily BED34_08000 PF06968 Biotin and Thiamin Synthesis associated domain BED34_08005 PF00155 Aminotransferase class I and II BED34_08010 PF08241 Methyltransferase domain BED34_08020 PF00005 ABC transporter BED34_08025 PF17757 UvrB interaction domain BED34_08025 PF00271 Helicase conserved C-terminal domain BED34_08025 PF04851 Type III restriction enzyme, res subunit BED34_08025 PF12344 Ultra-violet resistance protein B BED34_08025 PF02151 UvrB/uvrC motif BED34_08030 PF09905 DNA-binding protein VF530 BED34_08035 PF01933 Uncharacterised protein family UPF0052 BED34_08040 PF06463 Molybdenum Cofactor Synthesis C BED34_08040 PF04055 Radical SAM superfamily BED34_08045 PF01967 MoaC family BED34_08050 PF02597 ThiS family BED34_08055 PF02391 MoaE protein BED34_08060 PF01027 Inhibitor of apoptosis-promoting Bax1 BED34_08075 PF00005 ABC transporter BED34_08080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_08085 PF09209 Tetracyclin repressor-like, C-terminal domain BED34_08085 PF00440 Bacterial regulatory proteins, tetR family BED34_08090 PF00270 DEAD/DEAH box helicase BED34_08090 PF00271 Helicase conserved C-terminal domain BED34_08095 PF01207 Dihydrouridine synthase (Dus) BED34_08105 PF03448 MgtE intracellular N domain BED34_08105 PF01769 Divalent cation transporter BED34_08105 PF00571 CBS domain BED34_08110 PF00768 D-alanyl-D-alanine carboxypeptidase BED34_08115 PF09330 D-lactate dehydrogenase, membrane binding BED34_08115 PF01565 FAD binding domain BED34_08120 PF01928 CYTH domain BED34_08125 PF01844 HNH endonuclease BED34_08135 PF04226 Transglycosylase associated protein BED34_08140 PF00005 ABC transporter BED34_08150 PF00528 Binding-protein-dependent transport system inner membrane component BED34_08155 PF00528 Binding-protein-dependent transport system inner membrane component BED34_08160 PF07308 Protein of unknown function (DUF1456) BED34_08170 PF02653 Branched-chain amino acid transport system / permease component BED34_08175 PF02653 Branched-chain amino acid transport system / permease component BED34_08180 PF00005 ABC transporter BED34_08185 PF00005 ABC transporter BED34_08190 PF00581 Rhodanese-like domain BED34_08205 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED34_08215 PF00005 ABC transporter BED34_08220 PF00528 Binding-protein-dependent transport system inner membrane component BED34_08235 PF03466 LysR substrate binding domain BED34_08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_08245 PF00892 EamA-like transporter family BED34_08255 PF00267 Gram-negative porin BED34_08260 PF13307 Helicase C-terminal domain BED34_08260 PF06733 DEAD_2 BED34_08265 PF00230 Major intrinsic protein BED34_08270 PF02885 Glycosyl transferase family, helical bundle domain BED34_08290 PF05971 RNA methyltransferase BED34_08295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_08295 PF13426 PAS domain BED34_08295 PF08447 PAS fold BED34_08300 PF00005 ABC transporter BED34_08305 PF00528 Binding-protein-dependent transport system inner membrane component BED34_08310 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_08315 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED34_08320 PF00210 Ferritin-like domain BED34_08325 PF13847 Methyltransferase domain BED34_08340 PF02469 Fasciclin domain BED34_08350 PF00892 EamA-like transporter family BED34_08360 PF13505 Outer membrane protein beta-barrel domain BED34_08380 PF00005 ABC transporter BED34_08380 PF12848 ABC transporter BED34_08385 PF02371 Transposase IS116/IS110/IS902 family BED34_08385 PF01548 Transposase BED34_08390 PF00899 ThiF family BED34_08395 PF03453 MoeA N-terminal region (domain I and II) BED34_08395 PF00994 Probable molybdopterin binding domain BED34_08395 PF03454 MoeA C-terminal region (domain IV) BED34_08410 PF12704 MacB-like periplasmic core domain BED34_08410 PF00005 ABC transporter BED34_08410 PF02687 FtsX-like permease family BED34_08430 PF00756 Putative esterase BED34_08435 PF00107 Zinc-binding dehydrogenase BED34_08435 PF08240 Alcohol dehydrogenase GroES-like domain BED34_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_08440 PF03466 LysR substrate binding domain BED34_08445 PF06779 Uncharacterised MFS-type transporter YbfB BED34_08450 PF01227 GTP cyclohydrolase I BED34_08455 PF04235 Protein of unknown function (DUF418) BED34_08460 PF00356 Bacterial regulatory proteins, lacI family BED34_08465 PF13407 Periplasmic binding protein domain BED34_08470 PF00005 ABC transporter BED34_08475 PF02653 Branched-chain amino acid transport system / permease component BED34_08480 PF01590 GAF domain BED34_08480 PF00158 Sigma-54 interaction domain BED34_08490 PF13247 4Fe-4S dicluster domain BED34_08490 PF12800 4Fe-4S binding domain BED34_08495 PF01750 Hydrogenase maturation protease BED34_08500 PF07450 Formate hydrogenlyase maturation protein HycH BED34_08505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED34_08510 PF12838 4Fe-4S dicluster domain BED34_08515 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED34_08515 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED34_08515 PF00374 Nickel-dependent hydrogenase BED34_08520 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED34_08520 PF00361 Proton-conducting membrane transporter BED34_08525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED34_08530 PF00361 Proton-conducting membrane transporter BED34_08530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED34_08535 PF00146 NADH dehydrogenase BED34_08540 PF00361 Proton-conducting membrane transporter BED34_08545 PF12798 4Fe-4S binding domain BED34_08545 PF00037 4Fe-4S binding domain BED34_08550 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BED34_08555 PF01455 HupF/HypC family BED34_08560 PF02698 DUF218 domain BED34_08565 PF03949 Malic enzyme, NAD binding domain BED34_08565 PF00390 Malic enzyme, N-terminal domain BED34_08575 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BED34_08575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BED34_08580 PF04172 LrgB-like family BED34_08585 PF03788 LrgA family BED34_08590 PF07690 Major Facilitator Superfamily BED34_08610 PF01588 Putative tRNA binding domain BED34_08610 PF09334 tRNA synthetases class I (M) BED34_08615 PF10609 NUBPL iron-transfer P-loop NTPase BED34_08620 PF00485 Phosphoribulokinase / Uridine kinase family BED34_08625 PF00692 dUTPase BED34_08630 PF05170 AsmA family BED34_08635 PF03606 C4-dicarboxylate anaerobic carrier BED34_08640 PF03471 Transporter associated domain BED34_08640 PF03741 Integral membrane protein TerC family BED34_08640 PF00571 CBS domain BED34_08650 PF00483 Nucleotidyl transferase BED34_08655 PF00535 Glycosyl transferase family 2 BED34_08665 PF01061 ABC-2 type transporter BED34_08670 PF00005 ABC transporter BED34_08675 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BED34_08680 PF01370 NAD dependent epimerase/dehydratase family BED34_08685 PF00534 Glycosyl transferases group 1 BED34_08685 PF00535 Glycosyl transferase family 2 BED34_08700 PF00872 Transposase, Mutator family BED34_08725 PF00483 Nucleotidyl transferase BED34_08730 PF00483 Nucleotidyl transferase BED34_08735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BED34_08735 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BED34_08740 PF01502 Phosphoribosyl-AMP cyclohydrolase BED34_08740 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BED34_08745 PF00977 Histidine biosynthesis protein BED34_08750 PF00977 Histidine biosynthesis protein BED34_08755 PF00117 Glutamine amidotransferase class-I BED34_08760 PF00475 Imidazoleglycerol-phosphate dehydratase BED34_08765 PF00155 Aminotransferase class I and II BED34_08770 PF00815 Histidinol dehydrogenase BED34_08775 PF08029 HisG, C-terminal domain BED34_08775 PF01634 ATP phosphoribosyltransferase BED34_08780 PF01370 NAD dependent epimerase/dehydratase family BED34_08785 PF02653 Branched-chain amino acid transport system / permease component BED34_08790 PF00005 ABC transporter BED34_08795 PF00465 Iron-containing alcohol dehydrogenase BED34_08805 PF13520 Amino acid permease BED34_08810 PF00929 Exonuclease BED34_08810 PF08411 Exonuclease C-terminal BED34_08815 PF00550 Phosphopantetheine attachment site BED34_08815 PF00501 AMP-binding enzyme BED34_08815 PF07993 Male sterility protein BED34_08820 PF04632 Fusaric acid resistance protein family BED34_08825 PF04363 Protein of unknown function (DUF496) BED34_08830 PF02653 Branched-chain amino acid transport system / permease component BED34_08835 PF02653 Branched-chain amino acid transport system / permease component BED34_08845 PF13407 Periplasmic binding protein domain BED34_08850 PF00288 GHMP kinases N terminal domain BED34_08855 PF00155 Aminotransferase class I and II BED34_08860 PF14824 Sirohaem biosynthesis protein central BED34_08860 PF10414 Sirohaem synthase dimerisation region BED34_08860 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_08865 PF00871 Acetokinase family BED34_08870 PF10662 Ethanolamine utilisation - propanediol utilisation BED34_08875 PF00936 BMC domain BED34_08885 PF13375 RnfC Barrel sandwich hybrid domain BED34_08885 PF10531 SLBB domain BED34_08885 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED34_08885 PF13237 4Fe-4S dicluster domain BED34_08890 PF00465 Iron-containing alcohol dehydrogenase BED34_08895 PF00171 Aldehyde dehydrogenase family BED34_08900 PF01923 Cobalamin adenosyltransferase BED34_08905 PF03319 Ethanolamine utilisation protein EutN/carboxysome BED34_08915 PF06130 Phosphate propanoyltransferase BED34_08925 PF00936 BMC domain BED34_08935 PF18427 DD-reactivating factor swiveling domain BED34_08935 PF08841 Diol dehydratase reactivase ATPase-like domain BED34_08940 PF02287 Dehydratase small subunit BED34_08945 PF02288 Dehydratase medium subunit BED34_08950 PF02286 Dehydratase large subunit BED34_08955 PF00936 BMC domain BED34_08960 PF00936 BMC domain BED34_08965 PF00230 Major intrinsic protein BED34_08970 PF12833 Helix-turn-helix domain BED34_08970 PF10114 Sensory domain found in PocR BED34_08975 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED34_08975 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED34_08985 PF02570 Precorrin-8X methylmutase BED34_08990 PF01888 CbiD BED34_08995 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_09000 PF05175 Methyltransferase small domain BED34_09005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_09010 PF11760 Cobalamin synthesis G N-terminal BED34_09010 PF11761 Cobalamin biosynthesis central region BED34_09010 PF01890 Cobalamin synthesis G C-terminus BED34_09015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_09020 PF02571 Precorrin-6x reductase CbiJ/CobK BED34_09025 PF06180 Cobalt chelatase (CbiK) BED34_09030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BED34_09035 PF01891 Cobalt uptake substrate-specific transmembrane region BED34_09040 PF02553 Cobalt transport protein component CbiN BED34_09045 PF02361 Cobalt transport protein BED34_09050 PF00005 ABC transporter BED34_09055 PF07685 CobB/CobQ-like glutamine amidotransferase domain BED34_09065 PF02654 Cobalamin-5-phosphate synthase BED34_09070 PF00300 Histidine phosphatase superfamily (branch 1) BED34_09075 PF02277 Phosphoribosyltransferase BED34_09120 PF04717 Type VI secretion system, phage-baseplate injector BED34_09145 PF00764 Arginosuccinate synthase BED34_09150 PF01554 MatE BED34_09160 PF02581 Thiamine monophosphate synthase BED34_09170 PF08220 DeoR-like helix-turn-helix domain BED34_09170 PF00455 DeoR C terminal sensor domain BED34_09175 PF00144 Beta-lactamase BED34_09180 PF00072 Response regulator receiver domain BED34_09180 PF01584 CheW-like domain BED34_09190 PF00155 Aminotransferase class I and II BED34_09190 PF00392 Bacterial regulatory proteins, gntR family BED34_09200 PF08546 Ketopantoate reductase PanE/ApbA C terminal BED34_09200 PF02558 Ketopantoate reductase PanE/ApbA BED34_09210 PF08402 TOBE domain BED34_09210 PF00005 ABC transporter BED34_09215 PF00528 Binding-protein-dependent transport system inner membrane component BED34_09225 PF07690 Major Facilitator Superfamily BED34_09230 PF07730 Histidine kinase BED34_09230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_09230 PF05231 MASE1 BED34_09235 PF00196 Bacterial regulatory proteins, luxR family BED34_09235 PF00072 Response regulator receiver domain BED34_09240 PF00072 Response regulator receiver domain BED34_09240 PF12431 Transcriptional regulator BED34_09245 PF17203 Single cache domain 3 BED34_09245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED34_09245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_09245 PF00989 PAS fold BED34_09260 PF08218 Citrate lyase ligase C-terminal domain BED34_09265 PF06857 Malonate decarboxylase delta subunit (MdcD) BED34_09270 PF03328 HpcH/HpaI aldolase/citrate lyase family BED34_09275 PF04223 Citrate lyase, alpha subunit (CitF) BED34_09280 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED34_09280 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase BED34_09285 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BED34_09290 PF00939 Sodium:sulfate symporter transmembrane region BED34_09305 PF03480 Bacterial extracellular solute-binding protein, family 7 BED34_09315 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BED34_09315 PF01648 4'-phosphopantetheinyl transferase superfamily BED34_09325 PF00083 Sugar (and other) transporter BED34_09330 PF00381 PTS HPr component phosphorylation site BED34_09330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_09335 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BED34_09340 PF00849 RNA pseudouridylate synthase BED34_09355 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_09355 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_09365 PF13953 PapC C-terminal domain BED34_09365 PF00577 Outer membrane usher protein BED34_09365 PF13954 PapC N-terminal domain BED34_09370 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_09370 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_09385 PF00196 Bacterial regulatory proteins, luxR family BED34_09385 PF00072 Response regulator receiver domain BED34_09395 PF06167 Glucose-regulated metallo-peptidase M90 BED34_09405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED34_09405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED34_09430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_09435 PF01548 Transposase BED34_09435 PF02371 Transposase IS116/IS110/IS902 family BED34_09440 PF00483 Nucleotidyl transferase BED34_09450 PF14001 YdfZ protein BED34_09465 PF10777 Inner membrane protein YlaC BED34_09470 PF16197 Ketoacyl-synthetase C-terminal extension BED34_09470 PF08240 Alcohol dehydrogenase GroES-like domain BED34_09470 PF08659 KR domain BED34_09470 PF02801 Beta-ketoacyl synthase, C-terminal domain BED34_09470 PF00698 Acyl transferase domain BED34_09470 PF00109 Beta-ketoacyl synthase, N-terminal domain BED34_09470 PF14765 Polyketide synthase dehydratase BED34_09470 PF00107 Zinc-binding dehydrogenase BED34_09470 PF00550 Phosphopantetheine attachment site BED34_09475 PF00872 Transposase, Mutator family BED34_09480 PF02929 Beta galactosidase small chain BED34_09480 PF00703 Glycosyl hydrolases family 2 BED34_09480 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BED34_09480 PF16353 Domain of unknown function(DUF4981) BED34_09480 PF02837 Glycosyl hydrolases family 2, sugar binding domain BED34_09485 PF00356 Bacterial regulatory proteins, lacI family BED34_09490 PF00313 'Cold-shock' DNA-binding domain BED34_09495 PF10781 Dextransucrase DSRB BED34_09500 PF00672 HAMP domain BED34_09500 PF02203 Tar ligand binding domain homologue BED34_09500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_09515 PF02308 MgtC family BED34_09520 PF00690 Cation transporter/ATPase, N-terminus BED34_09520 PF00689 Cation transporting ATPase, C-terminus BED34_09525 PF00107 Zinc-binding dehydrogenase BED34_09525 PF16884 N-terminal domain of oxidoreductase BED34_09530 PF00582 Universal stress protein family BED34_09535 PF05247 Flagellar transcriptional activator (FlhD) BED34_09540 PF05280 Flagellar transcriptional activator (FlhC) BED34_09545 PF01618 MotA/TolQ/ExbB proton channel family BED34_09550 PF13677 Membrane MotB of proton-channel complex MotA/MotB BED34_09550 PF00691 OmpA family BED34_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_09555 PF09078 CheY binding BED34_09555 PF01584 CheW-like domain BED34_09555 PF02895 Signal transducing histidine kinase, homodimeric domain BED34_09555 PF01627 Hpt domain BED34_09560 PF01584 CheW-like domain BED34_09565 PF00672 HAMP domain BED34_09565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_09565 PF02203 Tar ligand binding domain homologue BED34_09570 PF00672 HAMP domain BED34_09570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_09570 PF02203 Tar ligand binding domain homologue BED34_09575 PF01739 CheR methyltransferase, SAM binding domain BED34_09575 PF03705 CheR methyltransferase, all-alpha domain BED34_09580 PF01339 CheB methylesterase BED34_09580 PF00072 Response regulator receiver domain BED34_09585 PF00072 Response regulator receiver domain BED34_09590 PF04344 Chemotaxis phosphatase, CheZ BED34_09600 PF01312 FlhB HrpN YscU SpaS Family BED34_09605 PF00771 FHIPEP family BED34_09610 PF06366 Flagellar protein FlhE BED34_09620 PF05130 FlgN protein BED34_09625 PF04316 Anti-sigma-28 factor, FlgM BED34_09630 PF13144 Chaperone for flagella basal body P-ring formation BED34_09630 PF17656 FlgA N-terminal domain BED34_09635 PF00460 Flagella basal body rod protein BED34_09640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_09640 PF00460 Flagella basal body rod protein BED34_09645 PF13860 FlgD Ig-like domain BED34_09645 PF03963 Flagellar hook capping protein - N-terminal region BED34_09645 PF13861 FlgD Tudor-like domain BED34_09650 PF00460 Flagella basal body rod protein BED34_09650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_09650 PF07559 Flagellar basal body protein FlaE BED34_09655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_09655 PF00460 Flagella basal body rod protein BED34_09660 PF00460 Flagella basal body rod protein BED34_09660 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_09665 PF02107 Flagellar L-ring protein BED34_09670 PF02119 Flagellar P-ring protein BED34_09675 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BED34_09675 PF10135 Rod binding protein BED34_09680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BED34_09680 PF00460 Flagella basal body rod protein BED34_09685 PF00669 Bacterial flagellin N-terminal helical region BED34_09690 PF01311 Bacterial export proteins, family 1 BED34_09695 PF01313 Bacterial export proteins, family 3 BED34_09700 PF00813 FliP family BED34_09705 PF04347 Flagellar biosynthesis protein, FliO BED34_09710 PF16973 Flagellar motor switch protein FliN N-terminal BED34_09710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED34_09715 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED34_09715 PF02154 Flagellar motor switch protein FliM BED34_09720 PF03748 Flagellar basal body-associated protein FliL BED34_09725 PF02120 Flagellar hook-length control protein FliK BED34_09730 PF02050 Flagellar FliJ protein BED34_09735 PF18269 T3SS EscN ATPase C-terminal domain BED34_09735 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_09740 PF02108 Flagellar assembly protein FliH BED34_09745 PF14841 FliG middle domain BED34_09745 PF01706 FliG C-terminal domain BED34_09745 PF14842 FliG N-terminal domain BED34_09750 PF01514 Secretory protein of YscJ/FliF family BED34_09750 PF08345 Flagellar M-ring protein C-terminal BED34_09755 PF02049 Flagellar hook-basal body complex protein FliE BED34_09760 PF12167 Arm DNA-binding domain BED34_09760 PF00589 Phage integrase family BED34_09780 PF00730 HhH-GPD superfamily base excision DNA repair protein BED34_09785 PF01966 HD domain BED34_09790 PF12833 Helix-turn-helix domain BED34_09795 PF05400 Flagellar protein FliT BED34_09800 PF02561 Flagellar protein FliS BED34_09805 PF02465 Flagellar hook-associated protein 2 N-terminus BED34_09805 PF07195 Flagellar hook-associated protein 2 C-terminus BED34_09805 PF07196 Flagellin hook IN motif BED34_09810 PF08884 Flagellin D3 domain BED34_09810 PF00669 Bacterial flagellin N-terminal helical region BED34_09810 PF00700 Bacterial flagellin C-terminal helical region BED34_09815 PF00700 Bacterial flagellin C-terminal helical region BED34_09815 PF08884 Flagellin D3 domain BED34_09815 PF00669 Bacterial flagellin N-terminal helical region BED34_09825 PF04542 Sigma-70 region 2 BED34_09825 PF04539 Sigma-70 region 3 BED34_09825 PF04545 Sigma-70, region 4 BED34_09830 PF02899 Phage integrase, N-terminal SAM-like domain BED34_09835 PF00291 Pyridoxal-phosphate dependent enzyme BED34_09865 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BED34_09865 PF14850 DNA-binding domain of Proline dehydrogenase BED34_09865 PF01619 Proline dehydrogenase BED34_09865 PF00171 Aldehyde dehydrogenase family BED34_09870 PF00474 Sodium:solute symporter family BED34_09885 PF05638 Type VI secretion system effector, Hcp BED34_09890 PF03239 Iron permease FTR1 family BED34_09895 PF09375 Imelysin BED34_09895 PF13473 Cupredoxin-like domain BED34_09900 PF04261 Dyp-type peroxidase family BED34_09905 PF03358 NADPH-dependent FMN reductase BED34_09915 PF01344 Kelch motif BED34_09930 PF01613 Flavin reductase like domain BED34_09935 PF00881 Nitroreductase family BED34_09940 PF12697 Alpha/beta hydrolase family BED34_09945 PF01042 Endoribonuclease L-PSP BED34_09950 PF00857 Isochorismatase family BED34_09960 PF08362 YcdC-like protein, C-terminal region BED34_09960 PF00440 Bacterial regulatory proteins, tetR family BED34_09965 PF00324 Amino acid permease BED34_09975 PF00589 Phage integrase family BED34_09980 PF01527 Transposase BED34_09995 PF01541 GIY-YIG catalytic domain BED34_09995 PF02151 UvrB/uvrC motif BED34_09995 PF08459 UvrC Helix-hairpin-helix N-terminal BED34_10000 PF01066 CDP-alcohol phosphatidyltransferase BED34_10020 PF04606 Ogr/Delta-like zinc finger BED34_10095 PF03466 LysR substrate binding domain BED34_10095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_10105 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_10115 PF06530 Phage antitermination protein Q BED34_10120 PF10753 Toxin GhoT_OrtT BED34_10130 PF00959 Phage lysozyme BED34_10135 PF00561 alpha/beta hydrolase fold BED34_10140 PF04391 Protein of unknown function (DUF533) BED34_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_10145 PF03466 LysR substrate binding domain BED34_10150 PF00144 Beta-lactamase BED34_10155 PF06071 Protein of unknown function (DUF933) BED34_10155 PF01926 50S ribosome-binding GTPase BED34_10165 PF01195 Peptidyl-tRNA hydrolase BED34_10170 PF10762 Protein of unknown function (DUF2583) BED34_10180 PF14572 Phosphoribosyl synthetase-associated domain BED34_10180 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BED34_10185 PF00288 GHMP kinases N terminal domain BED34_10185 PF08544 GHMP kinases C terminal BED34_10190 PF03550 Outer membrane lipoprotein LolB BED34_10195 PF01488 Shikimate / quinate 5-dehydrogenase BED34_10195 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BED34_10195 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BED34_10200 PF00472 RF-1 domain BED34_10200 PF03462 PCRF domain BED34_10205 PF13847 Methyltransferase domain BED34_10205 PF17827 PrmC N-terminal domain BED34_10210 PF04247 Invasion gene expression up-regulator, SirB BED34_10215 PF13369 Transglutaminase-like superfamily BED34_10220 PF00793 DAHP synthetase I family BED34_10225 PF00916 Sulfate permease family BED34_10225 PF01740 STAS domain BED34_10230 PF00990 Diguanylate cyclase, GGDEF domain BED34_10255 PF02811 PHP domain BED34_10260 PF02613 Nitrate reductase delta subunit BED34_10265 PF07273 Protein of unknown function (DUF1439) BED34_10270 PF07690 Major Facilitator Superfamily BED34_10285 PF13302 Acetyltransferase (GNAT) domain BED34_10290 PF04337 Protein of unknown function, DUF480 BED34_10295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED34_10300 PF03023 Lipid II flippase MurJ BED34_10305 PF01699 Sodium/calcium exchanger protein BED34_10315 PF07690 Major Facilitator Superfamily BED34_10320 PF02371 Transposase IS116/IS110/IS902 family BED34_10320 PF01548 Transposase BED34_10330 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BED34_10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_10330 PF00672 HAMP domain BED34_10330 PF07730 Histidine kinase BED34_10335 PF02322 Cytochrome bd terminal oxidase subunit II BED34_10340 PF01654 Cytochrome bd terminal oxidase subunit I BED34_10345 PF00392 Bacterial regulatory proteins, gntR family BED34_10345 PF00155 Aminotransferase class I and II BED34_10350 PF00202 Aminotransferase class-III BED34_10355 PF04958 Arginine N-succinyltransferase beta subunit BED34_10360 PF00171 Aldehyde dehydrogenase family BED34_10365 PF04996 Succinylarginine dihydrolase BED34_10370 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BED34_10375 PF01548 Transposase BED34_10375 PF02371 Transposase IS116/IS110/IS902 family BED34_10380 PF00267 Gram-negative porin BED34_10385 PF13333 Integrase core domain BED34_10385 PF00665 Integrase core domain BED34_10385 PF13276 HTH-like domain BED34_10400 PF01979 Amidohydrolase family BED34_10405 PF00392 Bacterial regulatory proteins, gntR family BED34_10405 PF07702 UTRA domain BED34_10410 PF01979 Amidohydrolase family BED34_10440 PF01476 LysM domain BED34_10440 PF01551 Peptidase family M23 BED34_10445 PF01116 Fructose-bisphosphate aldolase class-II BED34_10450 PF01380 SIS domain BED34_10455 PF03610 PTS system fructose IIA component BED34_10460 PF03613 PTS system mannose/fructose/sorbose family IID component BED34_10470 PF03830 PTS system sorbose subfamily IIB component BED34_10475 PF08013 Tagatose 6 phosphate kinase BED34_10480 PF00455 DeoR C terminal sensor domain BED34_10480 PF08220 DeoR-like helix-turn-helix domain BED34_10490 PF01548 Transposase BED34_10490 PF02371 Transposase IS116/IS110/IS902 family BED34_10500 PF01479 S4 domain BED34_10500 PF00849 RNA pseudouridylate synthase BED34_10505 PF03616 Sodium/glutamate symporter BED34_10515 PF01548 Transposase BED34_10515 PF02371 Transposase IS116/IS110/IS902 family BED34_10520 PF01548 Transposase BED34_10520 PF02371 Transposase IS116/IS110/IS902 family BED34_10525 PF08003 Protein of unknown function (DUF1698) BED34_10530 PF13649 Methyltransferase domain BED34_10535 PF01124 MAPEG family BED34_10540 PF01904 Protein of unknown function DUF72 BED34_10545 PF00857 Isochorismatase family BED34_10550 PF02938 GAD domain BED34_10550 PF00152 tRNA synthetases class II (D, K and N) BED34_10550 PF01336 OB-fold nucleic acid binding domain BED34_10555 PF00293 NUDIX domain BED34_10560 PF01709 Transcriptional regulator BED34_10565 PF02075 Crossover junction endodeoxyribonuclease RuvC BED34_10570 PF07499 RuvA, C-terminal domain BED34_10570 PF01330 RuvA N terminal domain BED34_10575 PF17864 RuvB AAA lid domain BED34_10575 PF05496 Holliday junction DNA helicase RuvB P-loop domain BED34_10575 PF05491 RuvB C-terminal winged helix domain BED34_10580 PF00854 POT family BED34_10585 PF00950 ABC 3 transport family BED34_10590 PF00005 ABC transporter BED34_10595 PF01297 Zinc-uptake complex component A periplasmic BED34_10600 PF08525 Opacity-associated protein A N-terminal motif BED34_10600 PF01476 LysM domain BED34_10600 PF01551 Peptidase family M23 BED34_10605 PF03279 Bacterial lipid A biosynthesis acyltransferase BED34_10620 PF02887 Pyruvate kinase, alpha/beta domain BED34_10620 PF00224 Pyruvate kinase, barrel domain BED34_10625 PF01380 SIS domain BED34_10625 PF01418 Helix-turn-helix domain, rpiR family BED34_10630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BED34_10630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BED34_10635 PF01081 KDPG and KHG aldolase BED34_10640 PF00893 Small Multidrug Resistance protein BED34_10645 PF00893 Small Multidrug Resistance protein BED34_10650 PF01042 Endoribonuclease L-PSP BED34_10655 PF04851 Type III restriction enzyme, res subunit BED34_10655 PF13307 Helicase C-terminal domain BED34_10660 PF00814 Glycoprotease family BED34_10670 PF13193 AMP-binding enzyme C-terminal domain BED34_10670 PF00501 AMP-binding enzyme BED34_10675 PF00570 HRDC domain BED34_10675 PF01612 3'-5' exonuclease BED34_10680 PF03776 Septum formation topological specificity factor MinE BED34_10685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BED34_10690 PF03775 Septum formation inhibitor MinC, C-terminal domain BED34_10690 PF05209 Septum formation inhibitor MinC, N-terminal domain BED34_10700 PF05166 YcgL domain BED34_10705 PF13406 Transglycosylase SLT domain BED34_10710 PF01557 Fumarylacetoacetate (FAA) hydrolase family BED34_10715 PF03692 Putative zinc- or iron-chelating domain BED34_10740 PF00924 Mechanosensitive ion channel BED34_10745 PF02798 Glutathione S-transferase, N-terminal domain BED34_10745 PF14834 Glutathione S-transferase, C-terminal domain BED34_10765 PF07351 Protein of unknown function (DUF1480) BED34_10795 PF07690 Major Facilitator Superfamily BED34_10800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_10800 PF03466 LysR substrate binding domain BED34_10805 PF02470 MlaD protein BED34_10810 PF04403 Paraquat-inducible protein A BED34_10815 PF13185 GAF domain BED34_10820 PF17516 ProQ C-terminal domain BED34_10820 PF04352 ProQ/FINO family BED34_10825 PF00595 PDZ domain BED34_10825 PF11818 C-terminal domain of tail specific protease (DUF3340) BED34_10825 PF03572 Peptidase family S41 BED34_10825 PF17804 Tail specific protease N-terminal domain BED34_10830 PF01435 Peptidase family M48 BED34_10845 PF14583 Oligogalacturonate lyase BED34_10850 PF01614 Bacterial transcriptional regulator BED34_10850 PF09339 IclR helix-turn-helix domain BED34_10855 PF01510 N-acetylmuramoyl-L-alanine amidase BED34_10865 PF04307 LexA-binding, inner membrane-associated putative hydrolase BED34_10875 PF06178 Oligogalacturonate-specific porin protein (KdgM) BED34_10880 PF01547 Bacterial extracellular solute-binding protein BED34_10885 PF03459 TOBE domain BED34_10885 PF17912 MalK OB fold domain BED34_10885 PF00005 ABC transporter BED34_10890 PF00528 Binding-protein-dependent transport system inner membrane component BED34_10895 PF00528 Binding-protein-dependent transport system inner membrane component BED34_10900 PF06917 Periplasmic pectate lyase BED34_10910 PF04962 KduI/IolB family BED34_10915 PF07883 Cupin domain BED34_10920 PF00872 Transposase, Mutator family BED34_10925 PF13419 Haloacid dehalogenase-like hydrolase BED34_10930 PF14002 YniB-like protein BED34_10935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_10935 PF03466 LysR substrate binding domain BED34_10940 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BED34_10940 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BED34_10945 PF00378 Enoyl-CoA hydratase/isomerase BED34_10965 PF00950 ABC 3 transport family BED34_10970 PF00950 ABC 3 transport family BED34_10975 PF00005 ABC transporter BED34_10980 PF01297 Zinc-uptake complex component A periplasmic BED34_10985 PF01464 Transglycosylase SLT domain BED34_10990 PF01914 MarC family integral membrane protein BED34_11015 PF04474 Protein of unknown function (DUF554) BED34_11020 PF13619 KTSC domain BED34_11025 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED34_11025 PF03129 Anticodon binding domain BED34_11025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED34_11025 PF02824 TGS domain BED34_11030 PF05198 Translation initiation factor IF-3, N-terminal domain BED34_11030 PF00707 Translation initiation factor IF-3, C-terminal domain BED34_11035 PF01632 Ribosomal protein L35 BED34_11040 PF00453 Ribosomal protein L20 BED34_11045 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BED34_11045 PF01409 tRNA synthetases class II core domain (F) BED34_11050 PF03484 tRNA synthetase B5 domain BED34_11050 PF03483 B3/4 domain BED34_11050 PF01588 Putative tRNA binding domain BED34_11050 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BED34_11050 PF03147 Ferredoxin-fold anticodon binding domain BED34_11055 PF00216 Bacterial DNA-binding protein BED34_11060 PF13358 DDE superfamily endonuclease BED34_11060 PF13592 Winged helix-turn helix BED34_11070 PF01032 FecCD transport family BED34_11075 PF00255 Glutathione peroxidase BED34_11080 PF00005 ABC transporter BED34_11085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED34_11090 PF00535 Glycosyl transferase family 2 BED34_11095 PF00551 Formyl transferase BED34_11095 PF01370 NAD dependent epimerase/dehydratase family BED34_11095 PF02911 Formyl transferase, C-terminal domain BED34_11100 PF01522 Polysaccharide deacetylase BED34_11105 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BED34_11110 PF00892 EamA-like transporter family BED34_11120 PF00877 NlpC/P60 family BED34_11130 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BED34_11145 PF07715 TonB-dependent Receptor Plug Domain BED34_11145 PF00593 TonB dependent receptor BED34_11150 PF10636 Hemin uptake protein hemP BED34_11155 PF00793 DAHP synthetase I family BED34_11160 PF03618 Kinase/pyrophosphorylase BED34_11165 PF02896 PEP-utilising enzyme, TIM barrel domain BED34_11165 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BED34_11165 PF00391 PEP-utilising enzyme, mobile domain BED34_11175 PF01594 AI-2E family transporter BED34_11180 PF02913 FAD linked oxidases, C-terminal domain BED34_11180 PF01565 FAD binding domain BED34_11180 PF13183 4Fe-4S dicluster domain BED34_11185 PF03061 Thioesterase superfamily BED34_11190 PF01521 Iron-sulphur cluster biosynthesis BED34_11195 PF01458 Uncharacterized protein family (UPF0051) BED34_11200 PF00005 ABC transporter BED34_11205 PF01458 Uncharacterized protein family (UPF0051) BED34_11210 PF00266 Aminotransferase class-V BED34_11215 PF02657 Fe-S metabolism associated domain BED34_11220 PF17969 L,D-transpeptidase C-terminal domain BED34_11220 PF01476 LysM domain BED34_11220 PF03734 L,D-transpeptidase catalytic domain BED34_11225 PF04728 Lipoprotein leucine-zipper BED34_11230 PF02887 Pyruvate kinase, alpha/beta domain BED34_11230 PF00224 Pyruvate kinase, barrel domain BED34_11250 PF00677 Lumazine binding domain BED34_11260 PF07690 Major Facilitator Superfamily BED34_11265 PF03466 LysR substrate binding domain BED34_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_11270 PF00356 Bacterial regulatory proteins, lacI family BED34_11275 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED34_11275 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED34_11280 PF00877 NlpC/P60 family BED34_11285 PF00462 Glutaredoxin BED34_11290 PF00929 Exonuclease BED34_11300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED34_11310 PF16925 Tetracyclin repressor-like, C-terminal domain BED34_11310 PF00440 Bacterial regulatory proteins, tetR family BED34_11315 PF08019 Phosphoethanolamine transferase EptA/EptB BED34_11315 PF00884 Sulfatase BED34_11320 PF06945 Protein of unknown function (DUF1289) BED34_11325 PF00248 Aldo/keto reductase family BED34_11330 PF04632 Fusaric acid resistance protein family BED34_11340 PF07869 Protein of unknown function (DUF1656) BED34_11345 PF01047 MarR family BED34_11350 PF05433 Glycine zipper 2TM domain BED34_11355 PF03702 Anhydro-N-acetylmuramic acid kinase BED34_11360 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BED34_11365 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BED34_11365 PF01243 Pyridoxamine 5'-phosphate oxidase BED34_11370 PF00579 tRNA synthetases class I (W and Y) BED34_11370 PF01479 S4 domain BED34_11380 PF00043 Glutathione S-transferase, C-terminal domain BED34_11380 PF02798 Glutathione S-transferase, N-terminal domain BED34_11385 PF11656 YjbD family (DUF3811) BED34_11390 PF04893 Yip1 domain BED34_11400 PF01548 Transposase BED34_11400 PF02371 Transposase IS116/IS110/IS902 family BED34_11405 PF00854 POT family BED34_11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_11410 PF03466 LysR substrate binding domain BED34_11425 PF00005 ABC transporter BED34_11430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_11430 PF00005 ABC transporter BED34_11435 PF00528 Binding-protein-dependent transport system inner membrane component BED34_11435 PF12911 N-terminal TM domain of oligopeptide transport permease C BED34_11440 PF00528 Binding-protein-dependent transport system inner membrane component BED34_11445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_11460 PF02954 Bacterial regulatory protein, Fis family BED34_11460 PF00158 Sigma-54 interaction domain BED34_11465 PF04012 PspA/IM30 family BED34_11470 PF06667 Phage shock protein B BED34_11475 PF04024 PspC domain BED34_11485 PF04317 YcjX-like family, DUF463 BED34_11490 PF05128 Domain of unknown function (DUF697) BED34_11505 PF18024 Helix-turn-helix domain BED34_11505 PF00158 Sigma-54 interaction domain BED34_11510 PF08534 Redoxin BED34_11515 PF13378 Enolase C-terminal domain-like BED34_11515 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BED34_11520 PF00246 Zinc carboxypeptidase BED34_11525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_11530 PF01544 CorA-like Mg2+ transporter protein BED34_11535 PF01171 PP-loop family BED34_11540 PF00388 Phosphatidylinositol-specific phospholipase C, X domain BED34_11550 PF00893 Small Multidrug Resistance protein BED34_11555 PF02308 MgtC family BED34_11560 PF03891 Domain of unknown function (DUF333) BED34_11565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED34_11565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED34_11570 PF11739 Dicarboxylate transport BED34_11575 PF13617 YnbE-like lipoprotein BED34_11580 PF07027 Protein of unknown function (DUF1318) BED34_11585 PF02525 Flavodoxin-like fold BED34_11590 PF11898 Domain of unknown function (DUF3418) BED34_11590 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BED34_11590 PF00271 Helicase conserved C-terminal domain BED34_11590 PF04408 Helicase associated domain (HA2) BED34_11590 PF00270 DEAD/DEAH box helicase BED34_11605 PF00089 Trypsin BED34_11615 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BED34_11620 PF00672 HAMP domain BED34_11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_11620 PF00512 His Kinase A (phospho-acceptor) domain BED34_11625 PF00072 Response regulator receiver domain BED34_11625 PF00486 Transcriptional regulatory protein, C terminal BED34_11635 PF13520 Amino acid permease BED34_11640 PF07338 Protein of unknown function (DUF1471) BED34_11650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BED34_11650 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BED34_11650 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BED34_11655 PF02233 NAD(P) transhydrogenase beta subunit BED34_11660 PF00582 Universal stress protein family BED34_11665 PF13545 Crp-like helix-turn-helix domain BED34_11665 PF00027 Cyclic nucleotide-binding domain BED34_11670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED34_11670 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED34_11685 PF06445 GyrI-like small molecule binding domain BED34_11715 PF13419 Haloacid dehalogenase-like hydrolase BED34_11720 PF01842 ACT domain BED34_11725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_11725 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_11725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_11735 PF01510 N-acetylmuramoyl-L-alanine amidase BED34_11775 PF03466 LysR substrate binding domain BED34_11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_11780 PF07690 Major Facilitator Superfamily BED34_11795 PF05472 DNA replication terminus site-binding protein (Ter protein) BED34_11805 PF00206 Lyase BED34_11805 PF10415 Fumarase C C-terminus BED34_11810 PF01238 Phosphomannose isomerase type I BED34_11815 PF06097 Bacterial protein of unknown function (DUF945) BED34_11825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_11825 PF00356 Bacterial regulatory proteins, lacI family BED34_11830 PF02378 Phosphotransferase system, EIIC BED34_11830 PF00367 phosphotransferase system, EIIB BED34_11835 PF00155 Aminotransferase class I and II BED34_11840 PF00962 Adenosine/AMP deaminase BED34_11845 PF13593 SBF-like CPA transporter family (DUF4137) BED34_11850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BED34_11850 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BED34_11855 PF02311 AraC-like ligand binding domain BED34_11855 PF12833 Helix-turn-helix domain BED34_11865 PF00005 ABC transporter BED34_11870 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_11875 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED34_11880 PF02610 L-arabinose isomerase BED34_11880 PF11762 L-arabinose isomerase C-terminal domain BED34_11890 PF02463 RecF/RecN/SMC N terminal domain BED34_11915 PF10754 Protein of unknown function (DUF2569) BED34_11920 PF02508 Rnf-Nqr subunit, membrane protein BED34_11925 PF04060 Putative Fe-S cluster BED34_11930 PF13237 4Fe-4S dicluster domain BED34_11930 PF10531 SLBB domain BED34_11930 PF13375 RnfC Barrel sandwich hybrid domain BED34_11930 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED34_11940 PF12833 Helix-turn-helix domain BED34_11940 PF06445 GyrI-like small molecule binding domain BED34_11945 PF03116 NQR2, RnfD, RnfE family BED34_11950 PF04205 FMN-binding domain BED34_11955 PF02508 Rnf-Nqr subunit, membrane protein BED34_11960 PF00633 Helix-hairpin-helix motif BED34_11960 PF00730 HhH-GPD superfamily base excision DNA repair protein BED34_11960 PF10576 Iron-sulfur binding domain of endonuclease III BED34_12035 PF00293 NUDIX domain BED34_12060 PF03245 Bacteriophage Rz lysis protein BED34_12125 PF01695 IstB-like ATP binding protein BED34_12150 PF01381 Helix-turn-helix BED34_12150 PF00717 Peptidase S24-like BED34_12205 PF06630 Enterobacterial exodeoxyribonuclease VIII BED34_12205 PF12684 PDDEXK-like domain of unknown function (DUF3799) BED34_12225 PF00575 S1 RNA binding domain BED34_12225 PF00773 RNB domain BED34_12225 PF08206 Ribonuclease B OB domain BED34_12230 PF13722 5TM C-terminal transporter carbon starvation CstA BED34_12230 PF02554 Carbon starvation protein CstA BED34_12235 PF04328 Selenoprotein, putative BED34_12240 PF00923 Transaldolase/Fructose-6-phosphate aldolase BED34_12245 PF00455 DeoR C terminal sensor domain BED34_12245 PF08220 DeoR-like helix-turn-helix domain BED34_12255 PF00596 Class II Aldolase and Adducin N-terminal domain BED34_12260 PF05433 Glycine zipper 2TM domain BED34_12265 PF01253 Translation initiation factor SUI1 BED34_12270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BED34_12275 PF07338 Protein of unknown function (DUF1471) BED34_12280 PF03594 Benzoate membrane transport protein BED34_12285 PF07883 Cupin domain BED34_12285 PF01381 Helix-turn-helix BED34_12295 PF18073 Rubredoxin metal binding domain BED34_12300 PF06305 Lipopolysaccharide assembly protein A domain BED34_12305 PF01569 PAP2 superfamily BED34_12310 PF00925 GTP cyclohydrolase II BED34_12315 PF00330 Aconitase family (aconitate hydratase) BED34_12315 PF00694 Aconitase C-terminal domain BED34_12325 PF03466 LysR substrate binding domain BED34_12325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_12330 PF01396 Topoisomerase DNA binding C4 zinc finger BED34_12330 PF01751 Toprim domain BED34_12330 PF01131 DNA topoisomerase BED34_12330 PF08272 Topoisomerase I zinc-ribbon-like BED34_12335 PF10692 Protein of unknown function (DUF2498) BED34_12340 PF01343 Peptidase family S49 BED34_12340 PF08496 Peptidase family S49 N-terminal BED34_12345 PF00106 short chain dehydrogenase BED34_12350 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BED34_12350 PF12557 Cob(I)alamin adenosyltransferase N terminal BED34_12360 PF00849 RNA pseudouridylate synthase BED34_12360 PF01479 S4 domain BED34_12365 PF01300 Telomere recombination BED34_12370 PF02811 PHP domain BED34_12375 PF00425 chorismate binding enzyme BED34_12375 PF04715 Anthranilate synthase component I, N terminal region BED34_12380 PF00117 Glutamine amidotransferase class-I BED34_12385 PF02885 Glycosyl transferase family, helical bundle domain BED34_12385 PF00591 Glycosyl transferase family, a/b domain BED34_12390 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BED34_12390 PF00218 Indole-3-glycerol phosphate synthase BED34_12395 PF00291 Pyridoxal-phosphate dependent enzyme BED34_12400 PF00290 Tryptophan synthase alpha chain BED34_12410 PF03922 OmpW family BED34_12415 PF03692 Putative zinc- or iron-chelating domain BED34_12430 PF04279 Intracellular septation protein A BED34_12435 PF03061 Thioesterase superfamily BED34_12440 PF03544 Gram-negative bacterial TonB protein C-terminal BED34_12445 PF03795 YCII-related domain BED34_12460 PF13396 Phospholipase_D-nuclease N-terminal BED34_12460 PF13091 PLD-like domain BED34_12465 PF04269 Protein of unknown function, DUF440 BED34_12470 PF00005 ABC transporter BED34_12470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_12475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_12475 PF00005 ABC transporter BED34_12480 PF12911 N-terminal TM domain of oligopeptide transport permease C BED34_12480 PF00528 Binding-protein-dependent transport system inner membrane component BED34_12485 PF00528 Binding-protein-dependent transport system inner membrane component BED34_12490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_12495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_12500 PF01914 MarC family integral membrane protein BED34_12505 PF00465 Iron-containing alcohol dehydrogenase BED34_12505 PF00171 Aldehyde dehydrogenase family BED34_12510 PF00265 Thymidine kinase BED34_12520 PF00816 H-NS histone family BED34_12525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED34_12525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED34_12525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED34_12530 PF00072 Response regulator receiver domain BED34_12535 PF01734 Patatin-like phospholipase BED34_12545 PF02810 SEC-C motif BED34_12550 PF01842 ACT domain BED34_12550 PF00551 Formyl transferase BED34_12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_12565 PF03466 LysR substrate binding domain BED34_12570 PF03372 Endonuclease/Exonuclease/phosphatase family BED34_12575 PF00293 NUDIX domain BED34_12580 PF07383 Protein of unknown function (DUF1496) BED34_12585 PF01751 Toprim domain BED34_12585 PF01131 DNA topoisomerase BED34_12590 PF02769 AIR synthase related protein, C-terminal domain BED34_12590 PF00586 AIR synthase related protein, N-terminal domain BED34_12595 PF00881 Nitroreductase family BED34_12605 PF17763 Glutaminase/Asparaginase C-terminal domain BED34_12605 PF00710 Asparaginase, N-terminal BED34_12610 PF00857 Isochorismatase family BED34_12625 PF01641 SelR domain BED34_12630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED34_12630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BED34_12635 PF01263 Aldose 1-epimerase BED34_12640 PF06629 MltA-interacting protein MipA BED34_12645 PF06798 PrkA serine protein kinase C-terminal domain BED34_12645 PF08298 PrkA AAA domain BED34_12650 PF04285 Protein of unknown function (DUF444) BED34_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_12665 PF03466 LysR substrate binding domain BED34_12670 PF05726 Pirin C-terminal cupin domain BED34_12670 PF02678 Pirin BED34_12675 PF00563 EAL domain BED34_12675 PF13426 PAS domain BED34_12675 PF00990 Diguanylate cyclase, GGDEF domain BED34_12685 PF01168 Alanine racemase, N-terminal domain BED34_12685 PF00842 Alanine racemase, C-terminal domain BED34_12690 PF01266 FAD dependent oxidoreductase BED34_12695 PF04293 SpoVR like protein BED34_12700 PF07840 FadR C-terminal domain BED34_12700 PF00392 Bacterial regulatory proteins, gntR family BED34_12705 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BED34_12710 PF02600 Disulfide bond formation protein DsbB BED34_12730 PF03932 CutC family BED34_12735 PF06185 YecM protein BED34_12740 PF00750 tRNA synthetases class I (R) BED34_12740 PF03485 Arginyl tRNA synthetase N terminal domain BED34_12740 PF05746 DALR anticodon binding domain BED34_12750 PF02562 PhoH-like protein BED34_12765 PF13994 PgaD-like protein BED34_12770 PF00535 Glycosyl transferase family 2 BED34_12785 PF00557 Metallopeptidase family M24 BED34_12795 PF02272 DHHA1 domain BED34_12795 PF01411 tRNA synthetases class II (A) BED34_12795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BED34_12805 PF03848 Tellurite resistance protein TehB BED34_12805 PF09313 Domain of unknown function (DUF1971) BED34_12815 PF00578 AhpC/TSA family BED34_12820 PF12704 MacB-like periplasmic core domain BED34_12820 PF02687 FtsX-like permease family BED34_12820 PF00005 ABC transporter BED34_12830 PF00005 ABC transporter BED34_12830 PF02687 FtsX-like permease family BED34_12830 PF12704 MacB-like periplasmic core domain BED34_12840 PF10634 Fe2+ transport protein BED34_12845 PF03239 Iron permease FTR1 family BED34_12860 PF04960 Glutaminase BED34_12865 PF01261 Xylose isomerase-like TIM barrel BED34_12870 PF00596 Class II Aldolase and Adducin N-terminal domain BED34_12875 PF17042 Nucleotide-binding C-terminal domain BED34_12875 PF07005 Sugar-binding N-terminal domain BED34_12880 PF00455 DeoR C terminal sensor domain BED34_12880 PF08220 DeoR-like helix-turn-helix domain BED34_12885 PF00989 PAS fold BED34_12885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_12885 PF17203 Single cache domain 3 BED34_12885 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BED34_12890 PF00072 Response regulator receiver domain BED34_12895 PF03390 2-hydroxycarboxylate transporter family BED34_12900 PF00324 Amino acid permease BED34_12915 PF07690 Major Facilitator Superfamily BED34_12930 PF00872 Transposase, Mutator family BED34_12935 PF08242 Methyltransferase domain BED34_12945 PF00872 Transposase, Mutator family BED34_12990 PF00589 Phage integrase family BED34_12990 PF02899 Phage integrase, N-terminal SAM-like domain BED34_12995 PF10709 Protein of unknown function (DUF2511) BED34_13000 PF05425 Copper resistance protein D BED34_13005 PF04234 CopC domain BED34_13010 PF00210 Ferritin-like domain BED34_13015 PF06440 DNA polymerase III, theta subunit BED34_13020 PF00561 alpha/beta hydrolase fold BED34_13025 PF00929 Exonuclease BED34_13030 PF00326 Prolyl oligopeptidase family BED34_13030 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BED34_13035 PF13995 YebF-like protein BED34_13045 PF07130 YebG protein BED34_13050 PF03880 DbpA RNA binding domain BED34_13050 PF00270 DEAD/DEAH box helicase BED34_13050 PF00271 Helicase conserved C-terminal domain BED34_13055 PF02222 ATP-grasp domain BED34_13060 PF03701 Uncharacterised protein family (UPF0181) BED34_13065 PF04715 Anthranilate synthase component I, N terminal region BED34_13065 PF00425 chorismate binding enzyme BED34_13070 PF00293 NUDIX domain BED34_13075 PF03315 Serine dehydratase beta chain BED34_13075 PF03313 Serine dehydratase alpha chain BED34_13080 PF01548 Transposase BED34_13080 PF02371 Transposase IS116/IS110/IS902 family BED34_13085 PF03741 Integral membrane protein TerC family BED34_13085 PF03471 Transporter associated domain BED34_13090 PF03610 PTS system fructose IIA component BED34_13090 PF03830 PTS system sorbose subfamily IIB component BED34_13095 PF03609 PTS system sorbose-specific iic component BED34_13100 PF03613 PTS system mannose/fructose/sorbose family IID component BED34_13105 PF06173 Protein of unknown function (DUF986) BED34_13110 PF02659 Putative manganese efflux pump BED34_13115 PF07715 TonB-dependent Receptor Plug Domain BED34_13115 PF00593 TonB dependent receptor BED34_13120 PF13426 PAS domain BED34_13120 PF00563 EAL domain BED34_13120 PF00990 Diguanylate cyclase, GGDEF domain BED34_13120 PF05231 MASE1 BED34_13120 PF08448 PAS fold BED34_13120 PF08447 PAS fold BED34_13130 PF13847 Methyltransferase domain BED34_13135 PF03717 Penicillin-binding Protein dimerisation domain BED34_13135 PF00905 Penicillin binding protein transpeptidase domain BED34_13145 PF00313 'Cold-shock' DNA-binding domain BED34_13150 PF10736 Protein of unknown function (DUF2627) BED34_13155 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BED34_13175 PF13974 YebO-like protein BED34_13180 PF13996 YobH-like protein BED34_13185 PF10964 Protein of unknown function (DUF2766) BED34_13190 PF12833 Helix-turn-helix domain BED34_13200 PF13520 Amino acid permease BED34_13210 PF00005 ABC transporter BED34_13210 PF00664 ABC transporter transmembrane region BED34_13220 PF03372 Endonuclease/Exonuclease/phosphatase family BED34_13230 PF00563 EAL domain BED34_13230 PF00990 Diguanylate cyclase, GGDEF domain BED34_13230 PF00360 Phytochrome region BED34_13230 PF01590 GAF domain BED34_13240 PF06411 HdeA/HdeB family BED34_13245 PF07007 Lysozyme inhibitor LprI BED34_13255 PF00892 EamA-like transporter family BED34_13270 PF01638 HxlR-like helix-turn-helix BED34_13275 PF05368 NmrA-like family BED34_13280 PF01053 Cys/Met metabolism PLP-dependent enzyme BED34_13290 PF00717 Peptidase S24-like BED34_13295 PF13438 Domain of unknown function (DUF4113) BED34_13295 PF11799 impB/mucB/samB family C-terminal domain BED34_13295 PF00817 impB/mucB/samB family BED34_13300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_13300 PF08447 PAS fold BED34_13310 PF00356 Bacterial regulatory proteins, lacI family BED34_13310 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_13315 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED34_13315 PF08244 Glycosyl hydrolases family 32 C terminal BED34_13320 PF01306 LacY proton/sugar symporter BED34_13335 PF00180 Isocitrate/isopropylmalate dehydrogenase BED34_13365 PF00180 Isocitrate/isopropylmalate dehydrogenase BED34_13370 PF00849 RNA pseudouridylate synthase BED34_13375 PF00293 NUDIX domain BED34_13385 PF04356 Protein of unknown function (DUF489) BED34_13390 PF08328 Adenylosuccinate lyase C-terminal BED34_13390 PF00206 Lyase BED34_13400 PF00072 Response regulator receiver domain BED34_13400 PF00486 Transcriptional regulatory protein, C terminal BED34_13405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_13405 PF08918 PhoQ Sensor BED34_13415 PF07687 Peptidase dimerisation domain BED34_13415 PF01546 Peptidase family M20/M25/M40 BED34_13420 PF02146 Sir2 family BED34_13430 PF02687 FtsX-like permease family BED34_13430 PF12704 MacB-like periplasmic core domain BED34_13435 PF00005 ABC transporter BED34_13440 PF02687 FtsX-like permease family BED34_13440 PF12704 MacB-like periplasmic core domain BED34_13445 PF00271 Helicase conserved C-terminal domain BED34_13445 PF00270 DEAD/DEAH box helicase BED34_13445 PF02559 CarD-like/TRCF domain BED34_13445 PF03461 TRCF domain BED34_13445 PF17757 UvrB interaction domain BED34_13450 PF05433 Glycine zipper 2TM domain BED34_13455 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_13460 PF05728 Uncharacterised protein family (UPF0227) BED34_13465 PF00933 Glycosyl hydrolase family 3 N terminal domain BED34_13470 PF01636 Phosphotransferase enzyme family BED34_13475 PF13036 Peptidoglycan-synthase activator LpoB BED34_13475 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED34_13480 PF07233 Protein of unknown function (DUF1425) BED34_13485 PF01230 HIT domain BED34_13490 PF08501 Shikimate dehydrogenase substrate binding domain BED34_13495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_13495 PF12793 Sugar transport-related sRNA regulator N-term BED34_13500 PF04055 Radical SAM superfamily BED34_13500 PF13186 Iron-sulfur cluster-binding domain BED34_13510 PF00664 ABC transporter transmembrane region BED34_13510 PF00005 ABC transporter BED34_13510 PF03412 Peptidase C39 family BED34_13520 PF02378 Phosphotransferase system, EIIC BED34_13520 PF00367 phosphotransferase system, EIIB BED34_13525 PF01026 TatD related DNase BED34_13530 PF09115 DNA polymerase III, delta subunit, C terminal BED34_13535 PF02223 Thymidylate kinase BED34_13540 PF02618 YceG-like family BED34_13545 PF01063 Amino-transferase class IV BED34_13550 PF00109 Beta-ketoacyl synthase, N-terminal domain BED34_13550 PF02801 Beta-ketoacyl synthase, C-terminal domain BED34_13555 PF00550 Phosphopantetheine attachment site BED34_13565 PF00698 Acyl transferase domain BED34_13570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BED34_13570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BED34_13575 PF02504 Fatty acid synthesis protein BED34_13580 PF01783 Ribosomal L32p protein family BED34_13585 PF02620 Large ribosomal RNA subunit accumulation protein YceD BED34_13590 PF02545 Maf-like protein BED34_13595 PF01479 S4 domain BED34_13595 PF00849 RNA pseudouridylate synthase BED34_13600 PF12111 Polyribonucleotide phosphorylase C terminal BED34_13600 PF00575 S1 RNA binding domain BED34_13600 PF10150 Ribonuclease E/G family BED34_13605 PF03992 Antibiotic biosynthesis monooxygenase BED34_13610 PF01979 Amidohydrolase family BED34_13615 PF06183 DinI-like family BED34_13620 PF13991 BssS protein family BED34_13625 PF01266 FAD dependent oxidoreductase BED34_13630 PF00196 Bacterial regulatory proteins, luxR family BED34_13635 PF01594 AI-2E family transporter BED34_13650 PF03916 Polysulphide reductase, NrfD BED34_13655 PF13247 4Fe-4S dicluster domain BED34_13665 PF00072 Response regulator receiver domain BED34_13665 PF00196 Bacterial regulatory proteins, luxR family BED34_13670 PF03279 Bacterial lipid A biosynthesis acyltransferase BED34_13675 PF05785 Rho-activating domain of cytotoxic necrotizing factor BED34_13675 PF18807 Tripartite Tc toxins repeat BED34_13680 PF07681 DoxX BED34_13690 PF07690 Major Facilitator Superfamily BED34_13695 PF00854 POT family BED34_13700 PF00535 Glycosyl transferase family 2 BED34_13705 PF04349 Periplasmic glucan biosynthesis protein, MdoG BED34_13710 PF01757 Acyltransferase family BED34_13720 PF01548 Transposase BED34_13720 PF02371 Transposase IS116/IS110/IS902 family BED34_13725 PF03471 Transporter associated domain BED34_13725 PF00999 Sodium/hydrogen exchanger family BED34_13725 PF02080 TrkA-C domain BED34_13735 PF00765 Autoinducer synthase BED34_13740 PF00196 Bacterial regulatory proteins, luxR family BED34_13740 PF03472 Autoinducer binding domain BED34_13755 PF08534 Redoxin BED34_13765 PF03916 Polysulphide reductase, NrfD BED34_13770 PF13247 4Fe-4S dicluster domain BED34_13770 PF00037 4Fe-4S binding domain BED34_13775 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BED34_13775 PF13435 Cytochrome c554 and c-prime BED34_13780 PF02335 Cytochrome c552 BED34_13790 PF04358 DsrC like protein BED34_13795 PF00708 Acylphosphatase BED34_13810 PF17785 PUA-like domain BED34_13810 PF10672 S-adenosylmethionine-dependent methyltransferase BED34_13815 PF08755 Hemimethylated DNA-binding protein YccV like BED34_13820 PF13380 CoA binding domain BED34_13825 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BED34_13830 PF02142 MGS-like domain BED34_13835 PF00580 UvrD/REP helicase N-terminal domain BED34_13835 PF13361 UvrD-like helicase C-terminal domain BED34_13835 PF12462 DNA helicase IV / RNA helicase N terminal BED34_13840 PF03733 Inner membrane component domain BED34_13845 PF12805 FUSC-like inner membrane protein yccS BED34_13850 PF04994 TfoX C-terminal domain BED34_13850 PF04993 TfoX N-terminal domain BED34_13860 PF01389 OmpA-like transmembrane domain BED34_13860 PF00691 OmpA family BED34_13865 PF06303 MatP N-terminal domain BED34_13865 PF17414 MatP C-terminal ribbon-helix-helix domain BED34_13870 PF13654 AAA domain BED34_13870 PF05362 Lon protease (S16) C-terminal proteolytic domain BED34_13875 PF07977 FabA-like domain BED34_13885 PF02801 Beta-ketoacyl synthase, C-terminal domain BED34_13885 PF00109 Beta-ketoacyl synthase, N-terminal domain BED34_13890 PF03886 ABC-type transport auxiliary lipoprotein component BED34_13895 PF02470 MlaD protein BED34_13900 PF04403 Paraquat-inducible protein A BED34_13905 PF00005 ABC transporter BED34_13905 PF12848 ABC transporter BED34_13905 PF16326 ABC transporter C-terminal domain BED34_13910 PF01170 Putative RNA methylase family UPF0020 BED34_13910 PF02926 THUMP domain BED34_13910 PF10672 S-adenosylmethionine-dependent methyltransferase BED34_13915 PF03473 MOSC domain BED34_13915 PF03476 MOSC N-terminal beta barrel domain BED34_13915 PF00111 2Fe-2S iron-sulfur cluster binding domain BED34_13920 PF07126 Cell-division protein ZapC BED34_13925 PF01180 Dihydroorotate dehydrogenase BED34_13930 PF01433 Peptidase family M1 domain BED34_13930 PF11940 Domain of unknown function (DUF3458) Ig-like fold BED34_13930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BED34_13935 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BED34_13935 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BED34_13940 PF01336 OB-fold nucleic acid binding domain BED34_13940 PF00152 tRNA synthetases class II (D, K and N) BED34_13945 PF00267 Gram-negative porin BED34_13950 PF00155 Aminotransferase class I and II BED34_13960 PF00753 Metallo-beta-lactamase superfamily BED34_13965 PF05951 Bacterial protein of unknown function (DUF882) BED34_13970 PF01471 Putative peptidoglycan binding domain BED34_13970 PF03734 L,D-transpeptidase catalytic domain BED34_13975 PF16330 MukB hinge domain BED34_13975 PF04310 MukB N-terminal BED34_13980 PF04288 MukE-like family BED34_13985 PF03882 MukF winged-helix domain BED34_13985 PF17193 MukF C-terminal domain BED34_13985 PF17192 MukF middle domain BED34_13995 PF02698 DUF218 domain BED34_14000 PF01636 Phosphotransferase enzyme family BED34_14005 PF02348 Cytidylyltransferase BED34_14010 PF03966 Trm112p-like protein BED34_14015 PF00313 'Cold-shock' DNA-binding domain BED34_14020 PF00313 'Cold-shock' DNA-binding domain BED34_14025 PF07063 Domain of unknown function (DUF1338) BED34_14030 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BED34_14035 PF00005 ABC transporter BED34_14035 PF00664 ABC transporter transmembrane region BED34_14040 PF00753 Metallo-beta-lactamase superfamily BED34_14040 PF03772 Competence protein BED34_14045 PF00216 Bacterial DNA-binding protein BED34_14050 PF00575 S1 RNA binding domain BED34_14055 PF02224 Cytidylate kinase BED34_14060 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BED34_14065 PF00266 Aminotransferase class-V BED34_14070 PF04239 Protein of unknown function (DUF421) BED34_14075 PF17763 Glutaminase/Asparaginase C-terminal domain BED34_14075 PF00710 Asparaginase, N-terminal BED34_14080 PF18381 YcaO cyclodehydratase C-terminal domain BED34_14080 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BED34_14085 PF01226 Formate/nitrite transporter BED34_14090 PF02901 Pyruvate formate lyase-like BED34_14090 PF01228 Glycine radical BED34_14095 PF04055 Radical SAM superfamily BED34_14100 PF07690 Major Facilitator Superfamily BED34_14105 PF00872 Transposase, Mutator family BED34_14115 PF02371 Transposase IS116/IS110/IS902 family BED34_14115 PF01548 Transposase BED34_14120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED34_14120 PF02403 Seryl-tRNA synthetase N-terminal domain BED34_14125 PF16193 AAA C-terminal domain BED34_14125 PF12002 MgsA AAA+ ATPase C terminal BED34_14125 PF00004 ATPase family associated with various cellular activities (AAA) BED34_14130 PF03548 Outer membrane lipoprotein carrier protein LolA BED34_14135 PF01580 FtsK/SpoIIIE family BED34_14135 PF17854 FtsK alpha domain BED34_14135 PF09397 Ftsk gamma domain BED34_14135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BED34_14140 PF01037 Lrp/AsnC ligand binding domain BED34_14145 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_14150 PF00005 ABC transporter BED34_14150 PF00664 ABC transporter transmembrane region BED34_14155 PF00005 ABC transporter BED34_14155 PF00664 ABC transporter transmembrane region BED34_14160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BED34_14165 PF01176 Translation initiation factor 1A / IF-1 BED34_14170 PF00004 ATPase family associated with various cellular activities (AAA) BED34_14170 PF02861 Clp amino terminal domain, pathogenicity island component BED34_14170 PF07724 AAA domain (Cdc48 subfamily) BED34_14170 PF17871 AAA lid domain BED34_14170 PF10431 C-terminal, D2-small domain, of ClpB protein BED34_14175 PF02617 ATP-dependent Clp protease adaptor protein ClpS BED34_14180 PF00313 'Cold-shock' DNA-binding domain BED34_14185 PF00005 ABC transporter BED34_14185 PF12704 MacB-like periplasmic core domain BED34_14185 PF02687 FtsX-like permease family BED34_14190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_14195 PF04393 Protein of unknown function (DUF535) BED34_14200 PF11398 Protein of unknown function (DUF2813) BED34_14205 PF03956 Lysine exporter LysO BED34_14210 PF03063 Prismane/CO dehydrogenase family BED34_14215 PF00111 2Fe-2S iron-sulfur cluster binding domain BED34_14215 PF00175 Oxidoreductase NAD-binding domain BED34_14215 PF00970 Oxidoreductase FAD-binding domain BED34_14220 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_14220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_14220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_14225 PF04072 Leucine carboxyl methyltransferase BED34_14230 PF01212 Beta-eliminating lyase BED34_14235 PF13460 NAD(P)H-binding BED34_14235 PF11066 Protein of unknown function (DUF2867) BED34_14240 PF01370 NAD dependent epimerase/dehydratase family BED34_14245 PF12883 Protein of unknown function (DUF3828) BED34_14250 PF00005 ABC transporter BED34_14255 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_14260 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14265 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14270 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_14275 PF05958 tRNA (Uracil-5-)-methyltransferase BED34_14280 PF10767 Protein of unknown function (DUF2593) BED34_14285 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14290 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14295 PF00005 ABC transporter BED34_14295 PF08402 TOBE domain BED34_14300 PF13416 Bacterial extracellular solute-binding protein BED34_14305 PF10722 Putative bacterial sensory transduction regulator BED34_14310 PF07214 Protein of unknown function (DUF1418) BED34_14315 PF00462 Glutaredoxin BED34_14320 PF06826 Predicted Permease Membrane Region BED34_14320 PF02080 TrkA-C domain BED34_14330 PF01569 PAP2 superfamily BED34_14335 PF01791 DeoC/LacD family aldolase BED34_14340 PF08220 DeoR-like helix-turn-helix domain BED34_14340 PF00455 DeoR C terminal sensor domain BED34_14350 PF03315 Serine dehydratase beta chain BED34_14350 PF03313 Serine dehydratase alpha chain BED34_14355 PF01548 Transposase BED34_14355 PF02371 Transposase IS116/IS110/IS902 family BED34_14360 PF07943 Penicillin-binding protein 5, C-terminal domain BED34_14360 PF00768 D-alanyl-D-alanine carboxypeptidase BED34_14365 PF00571 CBS domain BED34_14365 PF00291 Pyridoxal-phosphate dependent enzyme BED34_14370 PF01053 Cys/Met metabolism PLP-dependent enzyme BED34_14375 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14380 PF00005 ABC transporter BED34_14380 PF09383 NIL domain BED34_14385 PF03180 NLPA lipoprotein BED34_14400 PF13417 Glutathione S-transferase, N-terminal domain BED34_14400 PF00043 Glutathione S-transferase, C-terminal domain BED34_14405 PF00593 TonB dependent receptor BED34_14405 PF07715 TonB-dependent Receptor Plug Domain BED34_14410 PF00005 ABC transporter BED34_14415 PF01032 FecCD transport family BED34_14420 PF00324 Amino acid permease BED34_14425 PF03466 LysR substrate binding domain BED34_14425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_14440 PF03601 Conserved hypothetical protein 698 BED34_14445 PF01261 Xylose isomerase-like TIM barrel BED34_14450 PF00577 Outer membrane usher protein BED34_14450 PF13954 PapC N-terminal domain BED34_14450 PF13953 PapC C-terminal domain BED34_14455 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_14455 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_14465 PF17550 Family of unknown function BED34_14470 PF00486 Transcriptional regulatory protein, C terminal BED34_14475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED34_14475 PF02378 Phosphotransferase system, EIIC BED34_14480 PF00294 pfkB family carbohydrate kinase BED34_14485 PF00381 PTS HPr component phosphorylation site BED34_14485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_14490 PF00293 NUDIX domain BED34_14490 PF13344 Haloacid dehalogenase-like hydrolase BED34_14495 PF03264 NapC/NirT cytochrome c family, N-terminal region BED34_14500 PF00384 Molybdopterin oxidoreductase BED34_14500 PF18364 Molybdopterin oxidoreductase N-terminal domain BED34_14500 PF01568 Molydopterin dinucleotide binding domain BED34_14505 PF03692 Putative zinc- or iron-chelating domain BED34_14510 PF03222 Tryptophan/tyrosine permease family BED34_14515 PF01132 Elongation factor P (EF-P) OB domain BED34_14515 PF08207 Elongation factor P (EF-P) KOW-like domain BED34_14515 PF09285 Elongation factor P, C-terminal BED34_14520 PF03786 D-mannonate dehydratase (UxuA) BED34_14530 PF01232 Mannitol dehydrogenase Rossmann domain BED34_14530 PF08125 Mannitol dehydrogenase C-terminal domain BED34_14535 PF07729 FCD domain BED34_14535 PF00392 Bacterial regulatory proteins, gntR family BED34_14545 PF07683 Cobalamin synthesis protein cobW C-terminal domain BED34_14545 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED34_14550 PF01569 PAP2 superfamily BED34_14555 PF00877 NlpC/P60 family BED34_14565 PF12792 CSS motif domain associated with EAL BED34_14565 PF00563 EAL domain BED34_14570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_14575 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14580 PF12911 N-terminal TM domain of oligopeptide transport permease C BED34_14580 PF00528 Binding-protein-dependent transport system inner membrane component BED34_14585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_14585 PF00005 ABC transporter BED34_14590 PF13989 YejG-like protein BED34_14595 PF07690 Major Facilitator Superfamily BED34_14600 PF01479 S4 domain BED34_14600 PF00849 RNA pseudouridylate synthase BED34_14605 PF00271 Helicase conserved C-terminal domain BED34_14605 PF04851 Type III restriction enzyme, res subunit BED34_14610 PF01386 Ribosomal L25p family BED34_14615 PF04245 37-kD nucleoid-associated bacterial protein BED34_14620 PF07208 Protein of unknown function (DUF1414) BED34_14625 PF11893 Domain of unknown function (DUF3413) BED34_14625 PF00884 Sulfatase BED34_14645 PF00872 Transposase, Mutator family BED34_14655 PF01527 Transposase BED34_14675 PF00194 Eukaryotic-type carbonic anhydrase BED34_14680 PF00232 Glycosyl hydrolase family 1 BED34_14685 PF02378 Phosphotransferase system, EIIC BED34_14685 PF00367 phosphotransferase system, EIIB BED34_14685 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED34_14690 PF01418 Helix-turn-helix domain, rpiR family BED34_14690 PF01380 SIS domain BED34_14710 PF06530 Phage antitermination protein Q BED34_14720 PF06183 DinI-like family BED34_14725 PF01278 Omptin family BED34_14730 PF00672 HAMP domain BED34_14730 PF02743 Cache domain BED34_14730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_14735 PF12706 Beta-lactamase superfamily domain BED34_14745 PF00144 Beta-lactamase BED34_14760 PF00267 Gram-negative porin BED34_14775 PF07690 Major Facilitator Superfamily BED34_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_14780 PF01627 Hpt domain BED34_14780 PF16359 RcsD-ABL domain BED34_14785 PF00196 Bacterial regulatory proteins, luxR family BED34_14785 PF00072 Response regulator receiver domain BED34_14790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_14790 PF09456 RcsC Alpha-Beta-Loop (ABL) BED34_14790 PF00512 His Kinase A (phospho-acceptor) domain BED34_14790 PF00072 Response regulator receiver domain BED34_14795 PF03989 DNA gyrase C-terminal domain, beta-propeller BED34_14795 PF00521 DNA gyrase/topoisomerase IV, subunit A BED34_14805 PF00317 Ribonucleotide reductase, all-alpha domain BED34_14805 PF02867 Ribonucleotide reductase, barrel domain BED34_14805 PF03477 ATP cone domain BED34_14810 PF00268 Ribonucleotide reductase, small chain BED34_14820 PF03974 Ecotin BED34_14835 PF00994 Probable molybdopterin binding domain BED34_14840 PF03222 Tryptophan/tyrosine permease family BED34_14845 PF07437 YfaZ precursor BED34_14850 PF00199 Catalase BED34_14850 PF06628 Catalase-related immune-responsive BED34_14855 PF00501 AMP-binding enzyme BED34_14855 PF13193 AMP-binding enzyme C-terminal domain BED34_14860 PF13378 Enolase C-terminal domain-like BED34_14865 PF00378 Enoyl-CoA hydratase/isomerase BED34_14870 PF12697 Alpha/beta hydrolase family BED34_14875 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_14875 PF16582 Middle domain of thiamine pyrophosphate BED34_14875 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_14880 PF00425 chorismate binding enzyme BED34_14885 PF05957 Bacterial protein of unknown function (DUF883) BED34_14890 PF00920 Dehydratase family BED34_14895 PF03928 Haem-degrading BED34_14900 PF07690 Major Facilitator Superfamily BED34_14905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED34_14905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED34_14910 PF00356 Bacterial regulatory proteins, lacI family BED34_14915 PF00106 short chain dehydrogenase BED34_14920 PF01202 Shikimate kinase BED34_14930 PF06496 Protein of unknown function (DUF1097) BED34_14940 PF00361 Proton-conducting membrane transporter BED34_14945 PF00361 Proton-conducting membrane transporter BED34_14950 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BED34_14950 PF00361 Proton-conducting membrane transporter BED34_14955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BED34_14960 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BED34_14965 PF12838 4Fe-4S dicluster domain BED34_14970 PF00146 NADH dehydrogenase BED34_14975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED34_14975 PF00384 Molybdopterin oxidoreductase BED34_14975 PF01568 Molydopterin dinucleotide binding domain BED34_14975 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED34_14980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BED34_14980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED34_14980 PF10531 SLBB domain BED34_14990 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BED34_14990 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BED34_14995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BED34_15000 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BED34_15005 PF03466 LysR substrate binding domain BED34_15005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_15010 PF00155 Aminotransferase class I and II BED34_15020 PF02080 TrkA-C domain BED34_15020 PF03600 Citrate transporter BED34_15030 PF13419 Haloacid dehalogenase-like hydrolase BED34_15035 PF03887 YfbU domain BED34_15040 PF04217 Protein of unknown function, DUF412 BED34_15045 PF00871 Acetokinase family BED34_15050 PF07085 DRTGG domain BED34_15050 PF01515 Phosphate acetyl/butaryl transferase BED34_15055 PF00356 Bacterial regulatory proteins, lacI family BED34_15055 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_15060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_15070 PF03611 PTS system sugar-specific permease component BED34_15075 PF01548 Transposase BED34_15075 PF02371 Transposase IS116/IS110/IS902 family BED34_15080 PF00293 NUDIX domain BED34_15095 PF08338 Domain of unknown function (DUF1731) BED34_15095 PF01370 NAD dependent epimerase/dehydratase family BED34_15105 PF00005 ABC transporter BED34_15110 PF00528 Binding-protein-dependent transport system inner membrane component BED34_15115 PF00528 Binding-protein-dependent transport system inner membrane component BED34_15120 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_15125 PF02441 Flavoprotein BED34_15130 PF00156 Phosphoribosyl transferase domain BED34_15135 PF02674 Colicin V production protein BED34_15140 PF05036 Sporulation related domain BED34_15145 PF08245 Mur ligase middle domain BED34_15145 PF02875 Mur ligase family, glutamate ligase domain BED34_15150 PF17848 Acetyl-coA carboxylase zinc finger domain BED34_15150 PF01039 Carboxyl transferase domain BED34_15155 PF09335 SNARE associated Golgi protein BED34_15160 PF01416 tRNA pseudouridine synthase BED34_15165 PF02774 Semialdehyde dehydrogenase, dimerisation domain BED34_15165 PF01118 Semialdehyde dehydrogenase, NAD binding domain BED34_15170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED34_15170 PF11890 Domain of unknown function (DUF3410) BED34_15170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED34_15185 PF00892 EamA-like transporter family BED34_15190 PF00155 Aminotransferase class I and II BED34_15195 PF00578 AhpC/TSA family BED34_15205 PF02683 Cytochrome C biogenesis protein transmembrane region BED34_15205 PF11412 Disulphide bond corrector protein DsbC BED34_15220 PF03600 Citrate transporter BED34_15225 PF00328 Histidine phosphatase superfamily (branch 2) BED34_15230 PF00356 Bacterial regulatory proteins, lacI family BED34_15235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED34_15240 PF02378 Phosphotransferase system, EIIC BED34_15245 PF00232 Glycosyl hydrolase family 1 BED34_15250 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED34_15260 PF01177 Asp/Glu/Hydantoin racemase BED34_15270 PF00109 Beta-ketoacyl synthase, N-terminal domain BED34_15270 PF02801 Beta-ketoacyl synthase, C-terminal domain BED34_15275 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BED34_15275 PF01266 FAD dependent oxidoreductase BED34_15280 PF08891 YfcL protein BED34_15285 PF04315 Elongation factor P hydroxylase BED34_15290 PF01925 Sulfite exporter TauE/SafE BED34_15295 PF03411 Penicillin-insensitive murein endopeptidase BED34_15300 PF01264 Chorismate synthase BED34_15305 PF05175 Methyltransferase small domain BED34_15310 PF01713 Smr domain BED34_15315 PF00300 Histidine phosphatase superfamily (branch 1) BED34_15320 PF00378 Enoyl-CoA hydratase/isomerase BED34_15320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED34_15320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED34_15325 PF02803 Thiolase, C-terminal domain BED34_15325 PF00108 Thiolase, N-terminal domain BED34_15330 PF04175 Protein of unknown function (DUF406) BED34_15335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BED34_15340 PF04333 MlaA lipoprotein BED34_15345 PF03918 Cytochrome C biogenesis protein BED34_15350 PF03918 Cytochrome C biogenesis protein BED34_15355 PF08534 Redoxin BED34_15360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BED34_15360 PF01578 Cytochrome C assembly protein BED34_15365 PF03100 CcmE BED34_15370 PF04995 Heme exporter protein D (CcmD) BED34_15375 PF01578 Cytochrome C assembly protein BED34_15380 PF03379 CcmB protein BED34_15385 PF00005 ABC transporter BED34_15390 PF02371 Transposase IS116/IS110/IS902 family BED34_15390 PF01548 Transposase BED34_15395 PF01226 Formate/nitrite transporter BED34_15405 PF14659 Phage integrase, N-terminal SAM-like domain BED34_15405 PF13356 Arm DNA-binding domain BED34_15405 PF00589 Phage integrase family BED34_15465 PF08274 PhnA Zinc-Ribbon BED34_15465 PF03831 PhnA domain BED34_15470 PF03551 Transcriptional regulator PadR-like family BED34_15480 PF00232 Glycosyl hydrolase family 1 BED34_15485 PF02378 Phosphotransferase system, EIIC BED34_15485 PF00367 phosphotransferase system, EIIB BED34_15490 PF00356 Bacterial regulatory proteins, lacI family BED34_15495 PF04264 YceI-like domain BED34_15500 PF01292 Prokaryotic cytochrome b561 BED34_15505 PF13472 GDSL-like Lipase/Acylhydrolase family BED34_15505 PF07859 alpha/beta hydrolase fold BED34_15525 PF00005 ABC transporter BED34_15530 PF02405 Permease MlaE BED34_15535 PF07690 Major Facilitator Superfamily BED34_15545 PF07969 Amidohydrolase family BED34_15550 PF00324 Amino acid permease BED34_15555 PF13406 Transglycosylase SLT domain BED34_15565 PF00528 Binding-protein-dependent transport system inner membrane component BED34_15570 PF00005 ABC transporter BED34_15590 PF01292 Prokaryotic cytochrome b561 BED34_15595 PF00155 Aminotransferase class I and II BED34_15605 PF07350 Protein of unknown function (DUF1479) BED34_15615 PF04397 LytTr DNA-binding domain BED34_15615 PF00072 Response regulator receiver domain BED34_15625 PF02685 Glucokinase BED34_15635 PF03466 LysR substrate binding domain BED34_15635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_15640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_15640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_15640 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_15645 PF00248 Aldo/keto reductase family BED34_15655 PF01566 Natural resistance-associated macrophage protein BED34_15660 PF07670 Nucleoside recognition BED34_15660 PF07662 Na+ dependent nucleoside transporter C-terminus BED34_15660 PF01773 Na+ dependent nucleoside transporter N-terminus BED34_15690 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED34_15715 PF12843 Putative quorum-sensing-regulated virulence factor BED34_15720 PF12826 Helix-hairpin-helix motif BED34_15720 PF03120 NAD-dependent DNA ligase OB-fold domain BED34_15720 PF01653 NAD-dependent DNA ligase adenylation domain BED34_15720 PF00533 BRCA1 C Terminus (BRCT) domain BED34_15720 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BED34_15725 PF04354 ZipA, C-terminal FtsZ-binding domain BED34_15735 PF00291 Pyridoxal-phosphate dependent enzyme BED34_15740 PF00381 PTS HPr component phosphorylation site BED34_15745 PF02896 PEP-utilising enzyme, TIM barrel domain BED34_15745 PF05524 PEP-utilising enzyme, N-terminal BED34_15745 PF00391 PEP-utilising enzyme, mobile domain BED34_15750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BED34_15755 PF00512 His Kinase A (phospho-acceptor) domain BED34_15755 PF16527 Two-component sensor protein CpxA, periplasmic domain BED34_15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_15755 PF00672 HAMP domain BED34_15760 PF00486 Transcriptional regulatory protein, C terminal BED34_15760 PF00072 Response regulator receiver domain BED34_15765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_15770 PF12704 MacB-like periplasmic core domain BED34_15770 PF02687 FtsX-like permease family BED34_15770 PF00005 ABC transporter BED34_15775 PF00291 Pyridoxal-phosphate dependent enzyme BED34_15780 PF00005 ABC transporter BED34_15785 PF00528 Binding-protein-dependent transport system inner membrane component BED34_15790 PF00528 Binding-protein-dependent transport system inner membrane component BED34_15800 PF07690 Major Facilitator Superfamily BED34_15805 PF01380 SIS domain BED34_15805 PF01418 Helix-turn-helix domain, rpiR family BED34_15810 PF04074 YhcH/YjgK/YiaL BED34_15815 PF00480 ROK family BED34_15820 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BED34_15825 PF00701 Dihydrodipicolinate synthetase family BED34_15830 PF01548 Transposase BED34_15830 PF02371 Transposase IS116/IS110/IS902 family BED34_15835 PF04261 Dyp-type peroxidase family BED34_15840 PF06572 Protein of unknown function (DUF1131) BED34_15845 PF04076 Bacterial OB fold (BOF) protein BED34_15850 PF00583 Acetyltransferase (GNAT) family BED34_15855 PF01218 Coproporphyrinogen III oxidase BED34_15860 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BED34_15870 PF00390 Malic enzyme, N-terminal domain BED34_15870 PF01515 Phosphate acetyl/butaryl transferase BED34_15870 PF03949 Malic enzyme, NAD binding domain BED34_15875 PF00293 NUDIX domain BED34_15885 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BED34_15890 PF00384 Molybdopterin oxidoreductase BED34_15890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED34_15890 PF01568 Molydopterin dinucleotide binding domain BED34_15890 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED34_15895 PF03927 NapD protein BED34_15905 PF00072 Response regulator receiver domain BED34_15905 PF00196 Bacterial regulatory proteins, luxR family BED34_15915 PF00873 AcrB/AcrD/AcrF family BED34_15935 PF03960 ArsC family BED34_15940 PF07687 Peptidase dimerisation domain BED34_15940 PF01546 Peptidase family M20/M25/M40 BED34_15945 PF02557 D-alanyl-D-alanine carboxypeptidase BED34_15950 PF13980 Uncharacterised protein family (UPF0370) BED34_15965 PF13505 Outer membrane protein beta-barrel domain BED34_15980 PF02371 Transposase IS116/IS110/IS902 family BED34_15980 PF01548 Transposase BED34_15985 PF03245 Bacteriophage Rz lysis protein BED34_15990 PF02230 Phospholipase/Carboxylesterase BED34_16005 PF13718 GNAT acetyltransferase 2 BED34_16005 PF17176 tRNA-binding domain BED34_16005 PF05127 Helicase BED34_16010 PF04284 Protein of unknown function (DUF441) BED34_16015 PF04228 Putative neutral zinc metallopeptidase BED34_16020 PF01259 SAICAR synthetase BED34_16025 PF06804 NlpB/DapX lipoprotein BED34_16030 PF00701 Dihydrodipicolinate synthetase family BED34_16035 PF01842 ACT domain BED34_16040 PF00578 AhpC/TSA family BED34_16045 PF01594 AI-2E family transporter BED34_16050 PF07720 Tetratricopeptide repeat BED34_16050 PF01435 Peptidase family M48 BED34_16055 PF03960 ArsC family BED34_16060 PF00308 Bacterial dnaA protein BED34_16065 PF00860 Permease family BED34_16080 PF00551 Formyl transferase BED34_16085 PF13302 Acetyltransferase (GNAT) domain BED34_16095 PF00005 ABC transporter BED34_16100 PF00528 Binding-protein-dependent transport system inner membrane component BED34_16105 PF00528 Binding-protein-dependent transport system inner membrane component BED34_16110 PF13089 Polyphosphate kinase N-terminal domain BED34_16110 PF02503 Polyphosphate kinase middle domain BED34_16110 PF13090 Polyphosphate kinase C-terminal domain 2 BED34_16110 PF17941 Polyphosphate kinase C-terminal domain 1 BED34_16115 PF02541 Ppx/GppA phosphatase family BED34_16130 PF08447 PAS fold BED34_16130 PF00990 Diguanylate cyclase, GGDEF domain BED34_16130 PF05231 MASE1 BED34_16130 PF08448 PAS fold BED34_16130 PF13426 PAS domain BED34_16130 PF00563 EAL domain BED34_16135 PF00012 Hsp70 protein BED34_16140 PF13533 Biotin-lipoyl like BED34_16145 PF00873 AcrB/AcrD/AcrF family BED34_16150 PF00873 AcrB/AcrD/AcrF family BED34_16155 PF07690 Major Facilitator Superfamily BED34_16160 PF00672 HAMP domain BED34_16160 PF00512 His Kinase A (phospho-acceptor) domain BED34_16160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_16165 PF00072 Response regulator receiver domain BED34_16165 PF00486 Transcriptional regulatory protein, C terminal BED34_16170 PF07411 Domain of unknown function (DUF1508) BED34_16180 PF00781 Diacylglycerol kinase catalytic domain BED34_16185 PF03608 PTS system enzyme II sorbitol-specific factor BED34_16190 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BED34_16190 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BED34_16195 PF03829 PTS system glucitol/sorbitol-specific IIA component BED34_16200 PF00106 short chain dehydrogenase BED34_16205 PF06923 Glucitol operon activator protein (GutM) BED34_16210 PF00455 DeoR C terminal sensor domain BED34_16210 PF08220 DeoR-like helix-turn-helix domain BED34_16215 PF00571 CBS domain BED34_16215 PF01380 SIS domain BED34_16230 PF08543 Phosphomethylpyrimidine kinase BED34_16260 PF00872 Transposase, Mutator family BED34_16300 PF01548 Transposase BED34_16300 PF02371 Transposase IS116/IS110/IS902 family BED34_16305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BED34_16305 PF00034 Cytochrome c BED34_16325 PF00958 GMP synthase C terminal domain BED34_16325 PF00117 Glutamine amidotransferase class-I BED34_16325 PF02540 NAD synthase BED34_16330 PF00571 CBS domain BED34_16330 PF00478 IMP dehydrogenase / GMP reductase domain BED34_16335 PF02601 Exonuclease VII, large subunit BED34_16335 PF13742 OB-fold nucleic acid binding domain BED34_16340 PF07191 zinc-ribbons BED34_16350 PF02371 Transposase IS116/IS110/IS902 family BED34_16350 PF01548 Transposase BED34_16355 PF01926 50S ribosome-binding GTPase BED34_16355 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BED34_16365 PF13360 PQQ-like domain BED34_16375 PF03129 Anticodon binding domain BED34_16375 PF13393 Histidyl-tRNA synthetase BED34_16380 PF04551 GcpE protein BED34_16385 PF13464 Domain of unknown function (DUF4115) BED34_16395 PF04055 Radical SAM superfamily BED34_16400 PF00334 Nucleoside diphosphate kinase BED34_16410 PF06832 Penicillin-Binding Protein C-terminus Family BED34_16410 PF00912 Transglycosylase BED34_16410 PF00905 Penicillin binding protein transpeptidase domain BED34_16415 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BED34_16415 PF17962 Bacterial macroglobulin domain 6 BED34_16415 PF00207 Alpha-2-macroglobulin family BED34_16415 PF07703 Alpha-2-macroglobulin bait region domain BED34_16415 PF07678 A-macroglobulin TED domain BED34_16415 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BED34_16415 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BED34_16415 PF01835 MG2 domain BED34_16415 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BED34_16420 PF03212 Pertactin BED34_16420 PF03797 Autotransporter beta-domain BED34_16420 PF16168 Adhesin of bacterial autotransporter system, probable stalk BED34_16425 PF07179 SseB protein N-terminal domain BED34_16425 PF14581 SseB protein C-terminal domain BED34_16430 PF00883 Cytosol aminopeptidase family, catalytic domain BED34_16430 PF12404 Peptidase BED34_16435 PF04384 Iron-sulphur cluster assembly BED34_16440 PF00111 2Fe-2S iron-sulfur cluster binding domain BED34_16445 PF00012 Hsp70 protein BED34_16450 PF07743 HSCB C-terminal oligomerisation domain BED34_16450 PF00226 DnaJ domain BED34_16455 PF01521 Iron-sulphur cluster biosynthesis BED34_16460 PF01592 NifU-like N terminal domain BED34_16465 PF00266 Aminotransferase class-V BED34_16470 PF02082 Transcriptional regulator BED34_16475 PF00588 SpoU rRNA Methylase family BED34_16480 PF00459 Inositol monophosphatase family BED34_16485 PF03824 High-affinity nickel-transport protein BED34_16490 PF06226 Protein of unknown function (DUF1007) BED34_16500 PF12832 MFS_1 like family BED34_16505 PF00464 Serine hydroxymethyltransferase BED34_16510 PF00042 Globin BED34_16510 PF00175 Oxidoreductase NAD-binding domain BED34_16510 PF00970 Oxidoreductase FAD-binding domain BED34_16515 PF14502 Helix-turn-helix domain BED34_16515 PF14503 YhfZ C-terminal domain BED34_16525 PF01168 Alanine racemase, N-terminal domain BED34_16530 PF02126 Phosphotriesterase family BED34_16535 PF10941 Protein of unknown function DUF2620 BED34_16545 PF00543 Nitrogen regulatory protein P-II BED34_16550 PF02540 NAD synthase BED34_16550 PF00795 Carbon-nitrogen hydrolase BED34_16555 PF00158 Sigma-54 interaction domain BED34_16555 PF00072 Response regulator receiver domain BED34_16560 PF13942 YfhG lipoprotein BED34_16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_16565 PF00512 His Kinase A (phospho-acceptor) domain BED34_16575 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BED34_16575 PF02769 AIR synthase related protein, C-terminal domain BED34_16575 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BED34_16580 PF01464 Transglycosylase SLT domain BED34_16580 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_16585 PF14437 MafB19-like deaminase BED34_16600 PF01380 SIS domain BED34_16605 PF01418 Helix-turn-helix domain, rpiR family BED34_16605 PF01380 SIS domain BED34_16610 PF12838 4Fe-4S dicluster domain BED34_16620 PF01648 4'-phosphopantetheinyl transferase superfamily BED34_16625 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BED34_16630 PF02565 Recombination protein O C terminal BED34_16630 PF11967 Recombination protein O N terminal BED34_16635 PF01926 50S ribosome-binding GTPase BED34_16635 PF07650 KH domain BED34_16640 PF14622 Ribonuclease-III-like BED34_16640 PF00035 Double-stranded RNA binding motif BED34_16645 PF10502 Signal peptidase, peptidase S26 BED34_16650 PF00009 Elongation factor Tu GTP binding domain BED34_16650 PF06421 GTP-binding protein LepA C-terminus BED34_16650 PF00679 Elongation factor G C-terminus BED34_16650 PF03144 Elongation factor Tu domain 2 BED34_16665 PF17188 MucB/RseB C-terminal domain BED34_16665 PF03888 MucB/RseB N-terminal domain BED34_16670 PF03872 Anti sigma-E protein RseA, N-terminal domain BED34_16670 PF03873 Anti sigma-E protein RseA, C-terminal domain BED34_16675 PF08281 Sigma-70, region 4 BED34_16675 PF04542 Sigma-70 region 2 BED34_16680 PF02910 Fumarate reductase flavoprotein C-term BED34_16680 PF00890 FAD binding domain BED34_16685 PF05175 Methyltransferase small domain BED34_16690 PF00270 DEAD/DEAH box helicase BED34_16690 PF00271 Helicase conserved C-terminal domain BED34_16695 PF01548 Transposase BED34_16695 PF02371 Transposase IS116/IS110/IS902 family BED34_16700 PF02371 Transposase IS116/IS110/IS902 family BED34_16700 PF01548 Transposase BED34_16705 PF12796 Ankyrin repeats (3 copies) BED34_16720 PF01228 Glycine radical BED34_16725 PF03167 Uracil DNA glycosylase superfamily BED34_16730 PF01025 GrpE BED34_16735 PF01513 ATP-NAD kinase BED34_16740 PF02463 RecF/RecN/SMC N terminal domain BED34_16745 PF04355 SmpA / OmlA family BED34_16750 PF03658 RnfH family Ubiquitin BED34_16755 PF03364 Polyketide cyclase / dehydrase and lipid transport BED34_16760 PF01668 SmpB protein BED34_16775 PF00916 Sulfate permease family BED34_16775 PF01740 STAS domain BED34_16780 PF04794 YdjC-like protein BED34_16785 PF12833 Helix-turn-helix domain BED34_16785 PF07883 Cupin domain BED34_16790 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BED34_16795 PF00232 Glycosyl hydrolase family 1 BED34_16800 PF02378 Phosphotransferase system, EIIC BED34_16805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED34_16815 PF01548 Transposase BED34_16815 PF02371 Transposase IS116/IS110/IS902 family BED34_16820 PF00248 Aldo/keto reductase family BED34_16825 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED34_16830 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BED34_16835 PF07885 Ion channel BED34_16835 PF02254 TrkA-N domain BED34_16840 PF06411 HdeA/HdeB family BED34_16845 PF03824 High-affinity nickel-transport protein BED34_16850 PF03253 Urea transporter BED34_16855 PF01774 UreD urease accessory protein BED34_16860 PF02492 CobW/HypB/UreG, nucleotide-binding domain BED34_16865 PF01730 UreF BED34_16870 PF05194 UreE urease accessory protein, C-terminal domain BED34_16870 PF02814 UreE urease accessory protein, N-terminal domain BED34_16875 PF00449 Urease alpha-subunit, N-terminal domain BED34_16875 PF01979 Amidohydrolase family BED34_16880 PF00699 Urease beta subunit BED34_16885 PF00547 Urease, gamma subunit BED34_16890 PF00005 ABC transporter BED34_16895 PF00005 ABC transporter BED34_16900 PF00528 Binding-protein-dependent transport system inner membrane component BED34_16900 PF12911 N-terminal TM domain of oligopeptide transport permease C BED34_16905 PF00528 Binding-protein-dependent transport system inner membrane component BED34_16910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_16940 PF00313 'Cold-shock' DNA-binding domain BED34_16955 PF09400 Protein of unknown function (DUF2002) BED34_16960 PF07690 Major Facilitator Superfamily BED34_16965 PF12833 Helix-turn-helix domain BED34_16975 PF06392 Acid shock protein repeat BED34_16980 PF05957 Bacterial protein of unknown function (DUF883) BED34_16985 PF00392 Bacterial regulatory proteins, gntR family BED34_16985 PF00155 Aminotransferase class I and II BED34_16990 PF02627 Carboxymuconolactone decarboxylase family BED34_17000 PF07972 NrdI Flavodoxin like BED34_17005 PF02867 Ribonucleotide reductase, barrel domain BED34_17005 PF00317 Ribonucleotide reductase, all-alpha domain BED34_17005 PF08343 Ribonucleotide reductase N-terminal BED34_17010 PF00268 Ribonucleotide reductase, small chain BED34_17015 PF00571 CBS domain BED34_17015 PF00005 ABC transporter BED34_17020 PF00528 Binding-protein-dependent transport system inner membrane component BED34_17025 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BED34_17035 PF00929 Exonuclease BED34_17040 PF00075 RNase H BED34_17045 PF08241 Methyltransferase domain BED34_17050 PF16123 Hydroxyacylglutathione hydrolase C-terminus BED34_17050 PF00753 Metallo-beta-lactamase superfamily BED34_17055 PF01476 LysM domain BED34_17055 PF01464 Transglycosylase SLT domain BED34_17060 PF02371 Transposase IS116/IS110/IS902 family BED34_17060 PF01548 Transposase BED34_17065 PF03372 Endonuclease/Exonuclease/phosphatase family BED34_17070 PF07690 Major Facilitator Superfamily BED34_17075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_17075 PF03466 LysR substrate binding domain BED34_17080 PF00248 Aldo/keto reductase family BED34_17090 PF00872 Transposase, Mutator family BED34_17130 PF00005 ABC transporter BED34_17130 PF09383 NIL domain BED34_17135 PF00528 Binding-protein-dependent transport system inner membrane component BED34_17140 PF03180 NLPA lipoprotein BED34_17145 PF16358 RcsF lipoprotein BED34_17150 PF01980 tRNA-methyltransferase O BED34_17150 PF18389 TrmO C-terminal domain BED34_17155 PF03129 Anticodon binding domain BED34_17155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BED34_17155 PF04073 Aminoacyl-tRNA editing domain BED34_17160 PF04170 NlpE N-terminal domain BED34_17160 PF17185 NlpE C-terminal OB domain BED34_17165 PF00472 RF-1 domain BED34_17170 PF07152 YaeQ protein BED34_17180 PF07073 Modulator of Rho-dependent transcription termination (ROF) BED34_17185 PF00034 Cytochrome c BED34_17190 PF09179 TilS substrate binding domain BED34_17190 PF11734 TilS substrate C-terminal domain BED34_17190 PF01171 PP-loop family BED34_17195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BED34_17205 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BED34_17210 PF02811 PHP domain BED34_17210 PF01336 OB-fold nucleic acid binding domain BED34_17210 PF07733 Bacterial DNA polymerase III alpha NTPase domain BED34_17210 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BED34_17210 PF14579 Helix-hairpin-helix motif BED34_17215 PF01351 Ribonuclease HII BED34_17220 PF02684 Lipid-A-disaccharide synthetase BED34_17230 PF07977 FabA-like domain BED34_17235 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_17235 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BED34_17240 PF03938 Outer membrane protein (OmpH-like) BED34_17245 PF07244 Surface antigen variable number repeat BED34_17245 PF01103 Surface antigen BED34_17250 PF17820 PDZ domain BED34_17250 PF02163 Peptidase family M50 BED34_17260 PF01255 Putative undecaprenyl diphosphate synthase BED34_17265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BED34_17265 PF13288 DXP reductoisomerase C-terminal domain BED34_17265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BED34_17270 PF01765 Ribosome recycling factor BED34_17275 PF00696 Amino acid kinase family BED34_17280 PF00889 Elongation factor TS BED34_17285 PF00318 Ribosomal protein S2 BED34_17295 PF08335 GlnD PII-uridylyltransferase BED34_17295 PF01842 ACT domain BED34_17295 PF01909 Nucleotidyltransferase domain BED34_17295 PF01966 HD domain BED34_17300 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_17300 PF14602 Hexapeptide repeat of succinyl-transferase BED34_17300 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BED34_17305 PF11944 Protein of unknown function (DUF3461) BED34_17310 PF00258 Flavodoxin BED34_17315 PF00849 RNA pseudouridylate synthase BED34_17320 PF04287 tRNA pseudouridine synthase C BED34_17325 PF07348 Syd protein (SUKH-2) BED34_17330 PF14489 QueF-like protein BED34_17330 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BED34_17335 PF11892 Domain of unknown function (DUF3412) BED34_17335 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BED34_17335 PF03641 Possible lysine decarboxylase BED34_17340 PF01367 5'-3' exonuclease, C-terminal SAM fold BED34_17340 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED34_17345 PF02371 Transposase IS116/IS110/IS902 family BED34_17345 PF01548 Transposase BED34_17350 PF18125 RlmM ferredoxin-like domain BED34_17350 PF01728 FtsJ-like methyltransferase BED34_17355 PF04241 Protein of unknown function (DUF423) BED34_17360 PF03466 LysR substrate binding domain BED34_17360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_17365 PF06004 Bacterial protein of unknown function (DUF903) BED34_17370 PF00266 Aminotransferase class-V BED34_17375 PF02657 Fe-S metabolism associated domain BED34_17380 PF00899 ThiF family BED34_17385 PF03562 MltA specific insert domain BED34_17385 PF06725 3D domain BED34_17405 PF11741 AMIN domain BED34_17405 PF01520 N-acetylmuramoyl-L-alanine amidase BED34_17410 PF00696 Amino acid kinase family BED34_17410 PF00583 Acetyltransferase (GNAT) family BED34_17415 PF13538 UvrD-like helicase C-terminal domain BED34_17420 PF12705 PD-(D/E)XK nuclease superfamily BED34_17420 PF00580 UvrD/REP helicase N-terminal domain BED34_17420 PF13361 UvrD-like helicase C-terminal domain BED34_17425 PF05193 Peptidase M16 inactive domain BED34_17425 PF00675 Insulinase (Peptidase family M16) BED34_17425 PF16187 Middle or third domain of peptidase_M16 BED34_17430 PF17946 RecC C-terminal domain BED34_17435 PF12528 Type II secretion prepilin peptidase dependent protein C BED34_17435 PF07963 Prokaryotic N-terminal methylation motif BED34_17455 PF00303 Thymidylate synthase BED34_17460 PF01790 Prolipoprotein diacylglyceryl transferase BED34_17465 PF05524 PEP-utilising enzyme, N-terminal BED34_17465 PF00391 PEP-utilising enzyme, mobile domain BED34_17465 PF02896 PEP-utilising enzyme, TIM barrel domain BED34_17465 PF01590 GAF domain BED34_17480 PF02976 DNA mismatch repair enzyme MutH BED34_17485 PF03741 Integral membrane protein TerC family BED34_17490 PF00248 Aldo/keto reductase family BED34_17500 PF01553 Acyltransferase BED34_17500 PF00501 AMP-binding enzyme BED34_17500 PF13193 AMP-binding enzyme C-terminal domain BED34_17505 PF01568 Molydopterin dinucleotide binding domain BED34_17505 PF00384 Molybdopterin oxidoreductase BED34_17510 PF00356 Bacterial regulatory proteins, lacI family BED34_17515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BED34_17515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BED34_17520 PF03466 LysR substrate binding domain BED34_17520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_17595 PF08334 Type II secretion system (T2SS), protein G BED34_17595 PF07963 Prokaryotic N-terminal methylation motif BED34_17610 PF00263 Bacterial type II and III secretion system protein BED34_17610 PF03958 Bacterial type II/III secretion system short domain BED34_17625 PF00484 Carbonic anhydrase BED34_17630 PF01638 HxlR-like helix-turn-helix BED34_17645 PF01556 DnaJ C terminal domain BED34_17645 PF00226 DnaJ domain BED34_17650 PF02371 Transposase IS116/IS110/IS902 family BED34_17650 PF01548 Transposase BED34_17655 PF08448 PAS fold BED34_17655 PF00990 Diguanylate cyclase, GGDEF domain BED34_17660 PF13474 SnoaL-like domain BED34_17675 PF00872 Transposase, Mutator family BED34_17680 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BED34_17685 PF15723 Motility quorum-sensing regulator, toxin of MqsA BED34_17700 PF13592 Winged helix-turn helix BED34_17700 PF13358 DDE superfamily endonuclease BED34_17705 PF00589 Phage integrase family BED34_17745 PF13358 DDE superfamily endonuclease BED34_17745 PF13592 Winged helix-turn helix BED34_17780 PF00589 Phage integrase family BED34_17790 PF00152 tRNA synthetases class II (D, K and N) BED34_17790 PF01336 OB-fold nucleic acid binding domain BED34_17795 PF03462 PCRF domain BED34_17795 PF00472 RF-1 domain BED34_17800 PF01368 DHH family BED34_17800 PF02272 DHHA1 domain BED34_17800 PF17768 RecJ OB domain BED34_17805 PF13098 Thioredoxin-like domain BED34_17805 PF10411 Disulfide bond isomerase protein N-terminus BED34_17810 PF02899 Phage integrase, N-terminal SAM-like domain BED34_17810 PF00589 Phage integrase family BED34_17815 PF00258 Flavodoxin BED34_17820 PF06123 Inner membrane protein CreD BED34_17825 PF00672 HAMP domain BED34_17825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_17825 PF00512 His Kinase A (phospho-acceptor) domain BED34_17830 PF00072 Response regulator receiver domain BED34_17830 PF00486 Transcriptional regulatory protein, C terminal BED34_17835 PF07254 Membrane-bound toxin component of toxin-antitoxin system BED34_17840 PF03937 Flavinator of succinate dehydrogenase BED34_17845 PF01571 Aminomethyltransferase folate-binding domain BED34_17850 PF01548 Transposase BED34_17850 PF02371 Transposase IS116/IS110/IS902 family BED34_17855 PF03006 Haemolysin-III related BED34_17875 PF02347 Glycine cleavage system P-protein BED34_17880 PF01597 Glycine cleavage H-protein BED34_17885 PF01571 Aminomethyltransferase folate-binding domain BED34_17885 PF08669 Glycine cleavage T-protein C-terminal barrel domain BED34_17890 PF01494 FAD binding domain BED34_17895 PF01494 FAD binding domain BED34_17900 PF00557 Metallopeptidase family M24 BED34_17900 PF05195 Aminopeptidase P, N-terminal domain BED34_17905 PF03695 Uncharacterised protein family (UPF0149) BED34_17910 PF05164 Cell division protein ZapA BED34_17920 PF01812 5-formyltetrahydrofolate cyclo-ligase family BED34_17925 PF00113 Enolase, C-terminal TIM barrel domain BED34_17925 PF03952 Enolase, N-terminal domain BED34_17930 PF00117 Glutamine amidotransferase class-I BED34_17930 PF06418 CTP synthase N-terminus BED34_17935 PF03819 MazG nucleotide pyrophosphohydrolase domain BED34_17940 PF02824 TGS domain BED34_17940 PF13291 ACT domain BED34_17940 PF04607 Region found in RelA / SpoT proteins BED34_17945 PF01938 TRAM domain BED34_17945 PF05958 tRNA (Uracil-5-)-methyltransferase BED34_17950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BED34_17950 PF00072 Response regulator receiver domain BED34_17950 PF01627 Hpt domain BED34_17950 PF00512 His Kinase A (phospho-acceptor) domain BED34_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_17950 PF00672 HAMP domain BED34_17955 PF00595 PDZ domain BED34_17960 PF13286 Phosphohydrolase-associated domain BED34_17960 PF01966 HD domain BED34_17965 PF01048 Phosphorylase superfamily BED34_17970 PF01497 Periplasmic binding protein BED34_17975 PF03458 UPF0126 domain BED34_17980 PF01521 Iron-sulphur cluster biosynthesis BED34_17985 PF00654 Voltage gated chloride channel BED34_17990 PF00202 Aminotransferase class-III BED34_17995 PF07690 Major Facilitator Superfamily BED34_18000 PF01032 FecCD transport family BED34_18005 PF01497 Periplasmic binding protein BED34_18010 PF00005 ABC transporter BED34_18015 PF14814 Bifunctional transglycosylase second domain BED34_18015 PF00905 Penicillin binding protein transpeptidase domain BED34_18015 PF00912 Transglycosylase BED34_18015 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal BED34_18020 PF08482 ATP-dependent helicase C-terminal BED34_18020 PF00271 Helicase conserved C-terminal domain BED34_18020 PF04408 Helicase associated domain (HA2) BED34_18020 PF00270 DEAD/DEAH box helicase BED34_18025 PF02834 LigT like Phosphoesterase BED34_18030 PF17746 SfsA N-terminal OB domain BED34_18030 PF03749 Sugar fermentation stimulation protein RE domain BED34_18035 PF01258 Prokaryotic dksA/traR C4-type zinc finger BED34_18040 PF00749 tRNA synthetases class I (E and Q), catalytic domain BED34_18045 PF01743 Poly A polymerase head domain BED34_18045 PF12626 Polymerase A arginine-rich C-terminus BED34_18045 PF12627 Probable RNA and SrmB- binding site of polymerase A BED34_18050 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BED34_18055 PF02548 Ketopantoate hydroxymethyltransferase BED34_18060 PF02569 Pantoate-beta-alanine ligase BED34_18065 PF02261 Aspartate decarboxylase BED34_18070 PF01522 Polysaccharide deacetylase BED34_18075 PF01061 ABC-2 type transporter BED34_18080 PF00005 ABC transporter BED34_18085 PF00484 Carbonic anhydrase BED34_18090 PF00156 Phosphoribosyl transferase domain BED34_18095 PF10518 TAT (twin-arginine translocation) pathway signal sequence BED34_18095 PF00394 Multicopper oxidase BED34_18095 PF07731 Multicopper oxidase BED34_18095 PF07732 Multicopper oxidase BED34_18100 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) BED34_18105 PF17284 Spermidine synthase tetramerisation domain BED34_18110 PF02675 S-adenosylmethionine decarboxylase BED34_18115 PF18624 CDI immunity protein BED34_18120 PF00892 EamA-like transporter family BED34_18125 PF06062 Uncharacterised protein family (UPF0231) BED34_18135 PF00593 TonB dependent receptor BED34_18135 PF07715 TonB-dependent Receptor Plug Domain BED34_18140 PF01965 DJ-1/PfpI family BED34_18140 PF12833 Helix-turn-helix domain BED34_18150 PF07992 Pyridine nucleotide-disulphide oxidoreductase BED34_18150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BED34_18155 PF00364 Biotin-requiring enzyme BED34_18155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BED34_18155 PF02817 e3 binding domain BED34_18160 PF17831 Pyruvate dehydrogenase E1 component middle domain BED34_18160 PF00456 Transketolase, thiamine diphosphate binding domain BED34_18165 PF00392 Bacterial regulatory proteins, gntR family BED34_18165 PF07729 FCD domain BED34_18170 PF00324 Amino acid permease BED34_18175 PF17113 Regulatory signalling modulator protein AmpE BED34_18180 PF01510 N-acetylmuramoyl-L-alanine amidase BED34_18185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BED34_18185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BED34_18190 PF07963 Prokaryotic N-terminal methylation motif BED34_18195 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BED34_18195 PF00437 Type II/IV secretion system protein BED34_18200 PF00482 Type II secretion system (T2SS), protein F BED34_18205 PF00478 IMP dehydrogenase / GMP reductase domain BED34_18210 PF01121 Dephospho-CoA kinase BED34_18215 PF07072 Cell division protein BED34_18220 PF03884 DNA gyrase inhibitor YacG BED34_18225 PF00293 NUDIX domain BED34_18230 PF07516 SecA Wing and Scaffold domain BED34_18230 PF02810 SEC-C motif BED34_18230 PF01043 SecA preprotein cross-linking domain BED34_18230 PF07517 SecA DEAD-like domain BED34_18235 PF06558 Secretion monitor precursor protein (SecM) BED34_18245 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BED34_18250 PF12327 FtsZ family, C-terminal domain BED34_18250 PF00091 Tubulin/FtsZ family, GTPase domain BED34_18255 PF02491 SHS2 domain inserted in FTSA BED34_18260 PF03799 Cell division protein FtsQ BED34_18260 PF08478 POTRA domain, FtsQ-type BED34_18265 PF01820 D-ala D-ala ligase N-terminus BED34_18265 PF07478 D-ala D-ala ligase C-terminus BED34_18270 PF08245 Mur ligase middle domain BED34_18270 PF02875 Mur ligase family, glutamate ligase domain BED34_18270 PF01225 Mur ligase family, catalytic domain BED34_18275 PF04101 Glycosyltransferase family 28 C-terminal domain BED34_18275 PF03033 Glycosyltransferase family 28 N-terminal domain BED34_18280 PF01098 Cell cycle protein BED34_18285 PF08245 Mur ligase middle domain BED34_18285 PF02875 Mur ligase family, glutamate ligase domain BED34_18290 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BED34_18290 PF00953 Glycosyl transferase family 4 BED34_18295 PF01225 Mur ligase family, catalytic domain BED34_18295 PF02875 Mur ligase family, glutamate ligase domain BED34_18295 PF08245 Mur ligase middle domain BED34_18300 PF08245 Mur ligase middle domain BED34_18300 PF01225 Mur ligase family, catalytic domain BED34_18300 PF02875 Mur ligase family, glutamate ligase domain BED34_18305 PF00905 Penicillin binding protein transpeptidase domain BED34_18305 PF03717 Penicillin-binding Protein dimerisation domain BED34_18315 PF01795 MraW methylase family BED34_18320 PF02381 MraZ protein, putative antitoxin-like BED34_18325 PF06610 L-alanine exporter BED34_18330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BED34_18330 PF00356 Bacterial regulatory proteins, lacI family BED34_18335 PF10369 Small subunit of acetolactate synthase BED34_18340 PF00205 Thiamine pyrophosphate enzyme, central domain BED34_18340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BED34_18340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BED34_18345 PF00501 AMP-binding enzyme BED34_18350 PF03466 LysR substrate binding domain BED34_18350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_18355 PF08502 LeuA allosteric (dimerisation) domain BED34_18355 PF00682 HMGL-like BED34_18360 PF00180 Isocitrate/isopropylmalate dehydrogenase BED34_18365 PF00330 Aconitase family (aconitate hydratase) BED34_18370 PF00694 Aconitase C-terminal domain BED34_18385 PF07690 Major Facilitator Superfamily BED34_18400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BED34_18400 PF12793 Sugar transport-related sRNA regulator N-term BED34_18420 PF00528 Binding-protein-dependent transport system inner membrane component BED34_18425 PF00005 ABC transporter BED34_18430 PF09335 SNARE associated Golgi protein BED34_18435 PF03104 DNA polymerase family B, exonuclease domain BED34_18435 PF00136 DNA polymerase family B BED34_18440 PF12137 RNA polymerase recycling family C-terminal BED34_18440 PF00271 Helicase conserved C-terminal domain BED34_18440 PF18339 RapA N-terminal Tudor like domain 1 BED34_18440 PF18337 RapA N-terminal Tudor like domain BED34_18440 PF00176 SNF2 family N-terminal domain BED34_18445 PF07979 Intimin C-type lectin domain BED34_18445 PF09134 Invasin, domain 3 BED34_18445 PF02369 Bacterial Ig-like domain (group 1) BED34_18445 PF11924 Inverse autotransporter, beta-domain BED34_18450 PF00849 RNA pseudouridylate synthase BED34_18455 PF05099 Tellurite resistance protein TerB BED34_18455 PF00226 DnaJ domain BED34_18460 PF04453 LPS transport system D BED34_18460 PF03968 OstA-like protein BED34_18465 PF00639 PPIC-type PPIASE domain BED34_18465 PF09312 SurA N-terminal domain BED34_18470 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BED34_18475 PF00398 Ribosomal RNA adenine dimethylase BED34_18480 PF04379 ApaG domain BED34_18485 PF00149 Calcineurin-like phosphoesterase BED34_18490 PF00186 Dihydrofolate reductase BED34_18495 PF12821 Threonine/Serine exporter, ThrE BED34_18500 PF06738 Putative threonine/serine exporter BED34_18505 PF01810 LysE type translocator BED34_18510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED34_18510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BED34_18510 PF02142 MGS-like domain BED34_18515 PF00117 Glutamine amidotransferase class-I BED34_18515 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BED34_18520 PF01113 Dihydrodipicolinate reductase, N-terminus BED34_18520 PF05173 Dihydrodipicolinate reductase, C-terminus BED34_18525 PF02401 LytB protein BED34_18530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED34_18535 PF01252 Signal peptidase (SPase) II BED34_18540 PF06827 Zinc finger found in FPG and IleRS BED34_18540 PF08264 Anticodon-binding domain of tRNA BED34_18540 PF00133 tRNA synthetases class I (I, L, M and V) BED34_18545 PF06574 FAD synthetase BED34_18545 PF01687 Riboflavin kinase BED34_18555 PF01649 Ribosomal protein S20 BED34_18560 PF03466 LysR substrate binding domain BED34_18560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_18565 PF06965 Na+/H+ antiporter 1 BED34_18570 PF01556 DnaJ C terminal domain BED34_18570 PF00226 DnaJ domain BED34_18570 PF00684 DnaJ central domain BED34_18575 PF00012 Hsp70 protein BED34_18580 PF01184 GPR1/FUN34/yaaH family BED34_18590 PF07690 Major Facilitator Superfamily BED34_18595 PF00994 Probable molybdopterin binding domain BED34_18600 PF00923 Transaldolase/Fructose-6-phosphate aldolase BED34_18605 PF03883 Peroxide stress protein YaaA BED34_18610 PF01548 Transposase BED34_18610 PF02371 Transposase IS116/IS110/IS902 family BED34_18615 PF14821 Threonine synthase N terminus BED34_18615 PF00291 Pyridoxal-phosphate dependent enzyme BED34_18620 PF08544 GHMP kinases C terminal BED34_18620 PF00288 GHMP kinases N terminal domain BED34_18625 PF03447 Homoserine dehydrogenase, NAD binding domain BED34_18625 PF13840 ACT domain BED34_18625 PF00696 Amino acid kinase family BED34_18625 PF01842 ACT domain BED34_18625 PF00742 Homoserine dehydrogenase BED34_18635 PF00486 Transcriptional regulatory protein, C terminal BED34_18635 PF00072 Response regulator receiver domain BED34_18640 PF05981 CreA protein BED34_18645 PF06445 GyrI-like small molecule binding domain BED34_18645 PF12833 Helix-turn-helix domain BED34_18650 PF00300 Histidine phosphatase superfamily (branch 1) BED34_18660 PF01371 Trp repressor protein BED34_18665 PF14718 Soluble lytic murein transglycosylase L domain BED34_18665 PF01464 Transglycosylase SLT domain BED34_18670 PF00689 Cation transporting ATPase, C-terminus BED34_18670 PF00690 Cation transporter/ATPase, N-terminus BED34_18680 PF00990 Diguanylate cyclase, GGDEF domain BED34_18680 PF17152 Periplasmic sensor domain BED34_18685 PF00691 OmpA family BED34_18690 PF12848 ABC transporter BED34_18690 PF00005 ABC transporter BED34_18700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_18700 PF03466 LysR substrate binding domain BED34_18705 PF00107 Zinc-binding dehydrogenase BED34_18705 PF08240 Alcohol dehydrogenase GroES-like domain BED34_18720 PF18429 Domain of unknown function (DUF5609) BED34_18725 PF10144 Bacterial virulence factor haemolysin BED34_18730 PF01048 Phosphorylase superfamily BED34_18735 PF01676 Metalloenzyme superfamily BED34_18740 PF00591 Glycosyl transferase family, a/b domain BED34_18740 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BED34_18740 PF02885 Glycosyl transferase family, helical bundle domain BED34_18745 PF01791 DeoC/LacD family aldolase BED34_18750 PF07670 Nucleoside recognition BED34_18750 PF01773 Na+ dependent nucleoside transporter N-terminus BED34_18750 PF07662 Na+ dependent nucleoside transporter C-terminus BED34_18755 PF01026 TatD related DNase BED34_18760 PF01734 Patatin-like phospholipase BED34_18765 PF07043 Protein of unknown function (DUF1328) BED34_18770 PF04972 BON domain BED34_18775 PF03144 Elongation factor Tu domain 2 BED34_18775 PF16658 Class II release factor RF3, C-terminal domain BED34_18775 PF00009 Elongation factor Tu GTP binding domain BED34_18780 PF00583 Acetyltransferase (GNAT) family BED34_18785 PF03603 DNA polymerase III psi subunit BED34_18790 PF05175 Methyltransferase small domain BED34_18790 PF08468 Methyltransferase small domain N-terminal BED34_18795 PF00248 Aldo/keto reductase family BED34_18810 PF07256 Protein of unknown function (DUF1435) BED34_18815 PF00990 Diguanylate cyclase, GGDEF domain BED34_18820 PF00593 TonB dependent receptor BED34_18820 PF07660 Secretin and TonB N terminus short domain BED34_18820 PF07715 TonB-dependent Receptor Plug Domain BED34_18830 PF00294 pfkB family carbohydrate kinase BED34_18835 PF02264 LamB porin BED34_18835 PF11471 Maltoporin periplasmic N-terminal extension BED34_18840 PF02378 Phosphotransferase system, EIIC BED34_18840 PF00367 phosphotransferase system, EIIB BED34_18845 PF00251 Glycosyl hydrolases family 32 N-terminal domain BED34_18845 PF08244 Glycosyl hydrolases family 32 C terminal BED34_18850 PF00356 Bacterial regulatory proteins, lacI family BED34_18850 PF13407 Periplasmic binding protein domain BED34_18855 PF02954 Bacterial regulatory protein, Fis family BED34_18855 PF00989 PAS fold BED34_18855 PF00158 Sigma-54 interaction domain BED34_18860 PF01095 Pectinesterase BED34_18885 PF13358 DDE superfamily endonuclease BED34_18885 PF13592 Winged helix-turn helix BED34_18890 PF16861 Carbamoyltransferase C-terminus BED34_18890 PF02543 Carbamoyltransferase N-terminus BED34_18905 PF02734 DAK2 domain BED34_18910 PF02733 Dak1 domain BED34_18915 PF00465 Iron-containing alcohol dehydrogenase BED34_18920 PF00873 AcrB/AcrD/AcrF family BED34_18925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BED34_18945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED34_18950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED34_18950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED34_18955 PF04198 Putative sugar-binding domain BED34_18955 PF00325 Bacterial regulatory proteins, crp family BED34_18960 PF00005 ABC transporter BED34_18965 PF02653 Branched-chain amino acid transport system / permease component BED34_18970 PF02653 Branched-chain amino acid transport system / permease component BED34_18975 PF13407 Periplasmic binding protein domain BED34_18980 PF01791 DeoC/LacD family aldolase BED34_18985 PF03992 Antibiotic biosynthesis monooxygenase BED34_18995 PF10696 Protein of unknown function (DUF2501) BED34_19000 PF00872 Transposase, Mutator family BED34_19010 PF01527 Transposase BED34_19030 PF03739 Lipopolysaccharide export system permease LptF/LptG BED34_19035 PF03739 Lipopolysaccharide export system permease LptF/LptG BED34_19040 PF00883 Cytosol aminopeptidase family, catalytic domain BED34_19040 PF02789 Cytosol aminopeptidase family, N-terminal domain BED34_19045 PF04364 DNA polymerase III chi subunit, HolC BED34_19050 PF00133 tRNA synthetases class I (I, L, M and V) BED34_19050 PF08264 Anticodon-binding domain of tRNA BED34_19050 PF10458 Valyl tRNA synthetase tRNA binding arm BED34_19055 PF00583 Acetyltransferase (GNAT) family BED34_19060 PF06877 Regulator of ribonuclease activity B BED34_19065 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BED34_19065 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BED34_19070 PF04074 YhcH/YjgK/YiaL BED34_19080 PF00528 Binding-protein-dependent transport system inner membrane component BED34_19090 PF00005 ABC transporter BED34_19090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_19095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BED34_19095 PF00005 ABC transporter BED34_19125 PF00392 Bacterial regulatory proteins, gntR family BED34_19125 PF07702 UTRA domain BED34_19130 PF06754 Phosphonate metabolism protein PhnG BED34_19135 PF05845 Bacterial phosphonate metabolism protein (PhnH) BED34_19140 PF05861 Bacterial phosphonate metabolism protein (PhnI) BED34_19145 PF06007 Phosphonate metabolism protein PhnJ BED34_19150 PF00005 ABC transporter BED34_19155 PF00005 ABC transporter BED34_19160 PF07969 Amidohydrolase family BED34_19170 PF12706 Beta-lactamase superfamily domain BED34_19175 PF13460 NAD(P)H-binding BED34_19180 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BED34_19200 PF03459 TOBE domain BED34_19200 PF17912 MalK OB fold domain BED34_19200 PF00005 ABC transporter BED34_19205 PF00528 Binding-protein-dependent transport system inner membrane component BED34_19215 PF13416 Bacterial extracellular solute-binding protein BED34_19225 PF05426 Alginate lyase BED34_19225 PF07940 Heparinase II/III-like protein BED34_19230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BED34_19230 PF01276 Orn/Lys/Arg decarboxylase, major domain BED34_19230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BED34_19235 PF13520 Amino acid permease BED34_19245 PF13508 Acetyltransferase (GNAT) domain BED34_19265 PF03313 Serine dehydratase alpha chain BED34_19275 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BED34_19275 PF02321 Outer membrane efflux protein BED34_19280 PF00296 Luciferase-like monooxygenase BED34_19290 PF00270 DEAD/DEAH box helicase BED34_19290 PF12343 Cold shock protein DEAD box A BED34_19290 PF00271 Helicase conserved C-terminal domain BED34_19290 PF03880 DbpA RNA binding domain BED34_19295 PF13181 Tetratricopeptide repeat BED34_19295 PF07719 Tetratricopeptide repeat BED34_19300 PF03725 3' exoribonuclease family, domain 2 BED34_19300 PF00013 KH domain BED34_19300 PF00575 S1 RNA binding domain BED34_19300 PF01138 3' exoribonuclease family, domain 1 BED34_19300 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BED34_19305 PF00312 Ribosomal protein S15 BED34_19310 PF09157 Pseudouridine synthase II TruB, C-terminal BED34_19310 PF16198 tRNA pseudouridylate synthase B C-terminal domain BED34_19310 PF01509 TruB family pseudouridylate synthase (N terminal domain) BED34_19315 PF02033 Ribosome-binding factor A BED34_19320 PF00009 Elongation factor Tu GTP binding domain BED34_19320 PF03144 Elongation factor Tu domain 2 BED34_19320 PF08364 Bacterial translation initiation factor IF-2 associated region BED34_19320 PF04760 Translation initiation factor IF-2, N-terminal region BED34_19320 PF11987 Translation-initiation factor 2 BED34_19325 PF13184 NusA-like KH domain BED34_19325 PF08529 NusA N-terminal domain BED34_19325 PF00575 S1 RNA binding domain BED34_19330 PF17384 RimP C-terminal SH3 domain BED34_19330 PF02576 RimP N-terminal domain BED34_19345 PF03840 Preprotein translocase SecG subunit BED34_19350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BED34_19350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BED34_19350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BED34_19350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BED34_19355 PF00809 Pterin binding enzyme BED34_19360 PF06480 FtsH Extracellular BED34_19360 PF01434 Peptidase family M41 BED34_19360 PF00004 ATPase family associated with various cellular activities (AAA) BED34_19360 PF17862 AAA+ lid domain BED34_19365 PF01728 FtsJ-like methyltransferase BED34_19370 PF01985 CRS1 / YhbY (CRM) domain BED34_19375 PF01272 Transcription elongation factor, GreA/GreB, C-term BED34_19375 PF03449 Transcription elongation factor, N-terminal BED34_19380 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BED34_19385 PF00486 Transcriptional regulatory protein, C terminal BED34_19385 PF00072 Response regulator receiver domain BED34_19390 PF00512 His Kinase A (phospho-acceptor) domain BED34_19390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_19390 PF00672 HAMP domain BED34_19395 PF01926 50S ribosome-binding GTPase BED34_19395 PF01018 GTP1/OBG BED34_19400 PF00892 EamA-like transporter family BED34_19405 PF01016 Ribosomal L27 protein BED34_19410 PF00829 Ribosomal prokaryotic L21 protein BED34_19415 PF00348 Polyprenyl synthetase BED34_19425 PF13693 Winged helix-turn-helix DNA-binding BED34_19430 PF00056 lactate/malate dehydrogenase, NAD binding domain BED34_19430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BED34_19435 PF02863 Arginine repressor, C-terminal domain BED34_19435 PF01316 Arginine repressor, DNA binding domain BED34_19445 PF08245 Mur ligase middle domain BED34_19445 PF01225 Mur ligase family, catalytic domain BED34_19445 PF02875 Mur ligase family, glutamate ligase domain BED34_19450 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BED34_19455 PF00672 HAMP domain BED34_19455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_19455 PF02203 Tar ligand binding domain homologue BED34_19460 PF00719 Inorganic pyrophosphatase BED34_19465 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BED34_19470 PF04357 TamB, inner membrane protein subunit of TAM complex BED34_19475 PF01103 Surface antigen BED34_19475 PF07244 Surface antigen variable number repeat BED34_19475 PF17243 POTRA domain TamA domain 1 BED34_19480 PF01625 Peptide methionine sulfoxide reductase BED34_19485 PF00571 CBS domain BED34_19485 PF03471 Transporter associated domain BED34_19485 PF01595 Cyclin M transmembrane N-terminal domain BED34_19490 PF06526 Protein of unknown function (DUF1107) BED34_19495 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BED34_19500 PF00459 Inositol monophosphatase family BED34_19505 PF02872 5'-nucleotidase, C-terminal domain BED34_19505 PF00149 Calcineurin-like phosphoesterase BED34_19515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BED34_19515 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BED34_19520 PF04225 Opacity-associated protein A LysM-like domain BED34_19520 PF08525 Opacity-associated protein A N-terminal motif BED34_19530 PF03948 Ribosomal protein L9, C-terminal domain BED34_19530 PF01281 Ribosomal protein L9, N-terminal domain BED34_19535 PF01084 Ribosomal protein S18 BED34_19540 PF00436 Single-strand binding protein family BED34_19545 PF01250 Ribosomal protein S6 BED34_19555 PF00326 Prolyl oligopeptidase family BED34_19560 PF07338 Protein of unknown function (DUF1471) BED34_19565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BED34_19565 PF02770 Acyl-CoA dehydrogenase, middle domain BED34_19565 PF18158 Adaptive response protein AidB N-terminal domain BED34_19570 PF02371 Transposase IS116/IS110/IS902 family BED34_19570 PF01548 Transposase BED34_19575 PF08032 RNA 2'-O ribose methyltransferase substrate binding BED34_19575 PF00588 SpoU rRNA Methylase family BED34_19580 PF00773 RNB domain BED34_19580 PF08206 Ribonuclease B OB domain BED34_19580 PF08461 Ribonuclease R winged-helix domain BED34_19580 PF17876 Cold shock domain BED34_19580 PF00575 S1 RNA binding domain BED34_19585 PF02082 Transcriptional regulator BED34_19590 PF00709 Adenylosuccinate synthetase BED34_19595 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BED34_19600 PF01145 SPFH domain / Band 7 family BED34_19605 PF01145 SPFH domain / Band 7 family BED34_19605 PF12221 Bacterial membrane protein N terminal BED34_19610 PF01926 50S ribosome-binding GTPase BED34_19610 PF13167 GTP-binding GTPase N-terminal BED34_19610 PF16360 GTP-binding GTPase Middle Region BED34_19615 PF17209 Hfq protein BED34_19625 PF08676 MutL C terminal dimerisation domain BED34_19625 PF01119 DNA mismatch repair protein, C-terminal domain BED34_19630 PF01520 N-acetylmuramoyl-L-alanine amidase BED34_19635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BED34_19640 PF03853 YjeF-related protein N-terminus BED34_19640 PF01256 Carbohydrate kinase BED34_19645 PF08331 Domain of unknown function (DUF1730) BED34_19660 PF00929 Exonuclease BED34_19665 PF03193 RsgA GTPase BED34_19670 PF02666 Phosphatidylserine decarboxylase BED34_19675 PF12794 Mechanosensitive ion channel inner membrane domain 1 BED34_19675 PF12795 Mechanosensitive ion channel porin domain BED34_19675 PF00924 Mechanosensitive ion channel BED34_19680 PF00152 tRNA synthetases class II (D, K and N) BED34_19685 PF02910 Fumarate reductase flavoprotein C-term BED34_19685 PF00890 FAD binding domain BED34_19690 PF13183 4Fe-4S dicluster domain BED34_19690 PF13085 2Fe-2S iron-sulfur cluster binding domain BED34_19695 PF02300 Fumarate reductase subunit C BED34_19700 PF02313 Fumarate reductase subunit D BED34_19705 PF08212 Lipocalin-like domain BED34_19710 PF00893 Small Multidrug Resistance protein BED34_19715 PF08085 Entericidin EcnA/B family BED34_19720 PF08207 Elongation factor P (EF-P) KOW-like domain BED34_19720 PF09285 Elongation factor P, C-terminal BED34_19720 PF01132 Elongation factor P (EF-P) OB domain BED34_19725 PF04055 Radical SAM superfamily BED34_19730 PF13698 Domain of unknown function (DUF4156) BED34_19740 PF00118 TCP-1/cpn60 chaperonin family BED34_19745 PF00166 Chaperonin 10 Kd subunit BED34_19750 PF04186 FxsA cytoplasmic membrane protein BED34_19755 PF00206 Lyase BED34_19755 PF10415 Fumarase C C-terminus BED34_19760 PF03605 Anaerobic c4-dicarboxylate membrane transporter BED34_19765 PF03091 CutA1 divalent ion tolerance protein BED34_19770 PF02683 Cytochrome C biogenesis protein transmembrane region BED34_19770 PF11412 Disulphide bond corrector protein DsbC BED34_19775 PF02595 Glycerate kinase family BED34_19790 PF01228 Glycine radical BED34_19790 PF02901 Pyruvate formate lyase-like BED34_19795 PF00871 Acetokinase family BED34_19800 PF01490 Transmembrane amino acid transporter protein BED34_19805 PF00291 Pyridoxal-phosphate dependent enzyme BED34_19810 PF04055 Radical SAM superfamily BED34_19815 PF06228 Haem utilisation ChuX/HutX BED34_19825 PF10636 Hemin uptake protein hemP BED34_19830 PF00593 TonB dependent receptor BED34_19830 PF07715 TonB-dependent Receptor Plug Domain BED34_19835 PF05171 Haemin-degrading HemS.ChuX domain BED34_19840 PF01497 Periplasmic binding protein BED34_19845 PF01032 FecCD transport family BED34_19850 PF00005 ABC transporter BED34_19865 PF07715 TonB-dependent Receptor Plug Domain BED34_19865 PF00593 TonB dependent receptor BED34_19880 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system BED34_19890 PF00005 ABC transporter BED34_19890 PF06472 ABC transporter transmembrane region 2 BED34_19895 PF07715 TonB-dependent Receptor Plug Domain BED34_19900 PF04773 FecR protein BED34_19900 PF16220 Domain of unknown function (DUF4880) BED34_19915 PF01206 Sulfurtransferase TusA BED34_19920 PF04143 Sulphur transport BED34_19925 PF01312 FlhB HrpN YscU SpaS Family BED34_19930 PF01311 Bacterial export proteins, family 1 BED34_19935 PF01313 Bacterial export proteins, family 3 BED34_19940 PF00813 FliP family BED34_19945 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED34_19960 PF18269 T3SS EscN ATPase C-terminal domain BED34_19960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_19965 PF00771 FHIPEP family BED34_19975 PF07201 HrpJ-like domain BED34_19990 PF01514 Secretory protein of YscJ/FliF family BED34_20010 PF14525 AraC-binding-like domain BED34_20010 PF12833 Helix-turn-helix domain BED34_20035 PF04888 Secretion system effector C (SseC) like family BED34_20080 PF00072 Response regulator receiver domain BED34_20080 PF00196 Bacterial regulatory proteins, luxR family BED34_20085 PF00375 Sodium:dicarboxylate symporter family BED34_20090 PF16177 Acetyl-coenzyme A synthetase N-terminus BED34_20090 PF00501 AMP-binding enzyme BED34_20090 PF13193 AMP-binding enzyme C-terminal domain BED34_20095 PF04341 Protein of unknown function, DUF485 BED34_20100 PF00474 Sodium:solute symporter family BED34_20145 PF01808 AICARFT/IMPCHase bienzyme BED34_20145 PF02142 MGS-like domain BED34_20150 PF02843 Phosphoribosylglycinamide synthetase, C domain BED34_20150 PF02844 Phosphoribosylglycinamide synthetase, N domain BED34_20150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BED34_20155 PF07356 Protein of unknown function (DUF1481) BED34_20160 PF00216 Bacterial DNA-binding protein BED34_20165 PF04222 Protein of unknown function (DUF416) BED34_20170 PF04493 Endonuclease V BED34_20175 PF01208 Uroporphyrinogen decarboxylase (URO-D) BED34_20180 PF09297 NADH pyrophosphatase zinc ribbon domain BED34_20180 PF00293 NUDIX domain BED34_20185 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BED34_20190 PF13667 ThiC-associated domain BED34_20190 PF01964 Radical SAM ThiC family BED34_20195 PF02581 Thiamine monophosphate synthase BED34_20200 PF00899 ThiF family BED34_20205 PF02597 ThiS family BED34_20210 PF05690 Thiazole biosynthesis protein ThiG BED34_20215 PF06968 Biotin and Thiamin Synthesis associated domain BED34_20215 PF04055 Radical SAM superfamily BED34_20220 PF01548 Transposase BED34_20220 PF02371 Transposase IS116/IS110/IS902 family BED34_20225 PF04998 RNA polymerase Rpb1, domain 5 BED34_20225 PF00623 RNA polymerase Rpb1, domain 2 BED34_20225 PF04997 RNA polymerase Rpb1, domain 1 BED34_20225 PF05000 RNA polymerase Rpb1, domain 4 BED34_20225 PF04983 RNA polymerase Rpb1, domain 3 BED34_20230 PF00562 RNA polymerase Rpb2, domain 6 BED34_20230 PF04560 RNA polymerase Rpb2, domain 7 BED34_20230 PF04565 RNA polymerase Rpb2, domain 3 BED34_20230 PF10385 RNA polymerase beta subunit external 1 domain BED34_20230 PF04561 RNA polymerase Rpb2, domain 2 BED34_20230 PF04563 RNA polymerase beta subunit BED34_20235 PF00542 Ribosomal protein L7/L12 C-terminal domain BED34_20235 PF16320 Ribosomal protein L7/L12 dimerisation domain BED34_20240 PF00466 Ribosomal protein L10 BED34_20245 PF00687 Ribosomal protein L1p/L10e family BED34_20250 PF00298 Ribosomal protein L11, RNA binding domain BED34_20250 PF03946 Ribosomal protein L11, N-terminal domain BED34_20255 PF02357 Transcription termination factor nusG BED34_20255 PF00467 KOW motif BED34_20260 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BED34_20265 PF03143 Elongation factor Tu C-terminal domain BED34_20265 PF00009 Elongation factor Tu GTP binding domain BED34_20265 PF03144 Elongation factor Tu domain 2 BED34_20300 PF00485 Phosphoribulokinase / Uridine kinase family BED34_20305 PF02237 Biotin protein ligase C terminal domain BED34_20305 PF08279 HTH domain BED34_20305 PF03099 Biotin/lipoate A/B protein ligase family BED34_20310 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BED34_20310 PF01565 FAD binding domain BED34_20315 PF01548 Transposase BED34_20315 PF02371 Transposase IS116/IS110/IS902 family BED34_20345 PF12724 Flavodoxin domain BED34_20350 PF02386 Cation transport protein BED34_20355 PF09186 Domain of unknown function (DUF1949) BED34_20355 PF01205 Uncharacterized protein family UPF0029 BED34_20360 PF00557 Metallopeptidase family M24 BED34_20365 PF00378 Enoyl-CoA hydratase/isomerase BED34_20365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BED34_20365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BED34_20370 PF00108 Thiolase, N-terminal domain BED34_20370 PF02803 Thiolase, C-terminal domain BED34_20375 PF00175 Oxidoreductase NAD-binding domain BED34_20375 PF00970 Oxidoreductase FAD-binding domain BED34_20380 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BED34_20385 PF02357 Transcription termination factor nusG BED34_20390 PF00490 Delta-aminolevulinic acid dehydratase BED34_20395 PF01026 TatD related DNase BED34_20400 PF00902 Sec-independent protein translocase protein (TatC) BED34_20410 PF02416 mttA/Hcf106 family BED34_20415 PF03109 ABC1 family BED34_20420 PF02036 SCP-2 sterol transfer family BED34_20425 PF01209 ubiE/COQ5 methyltransferase family BED34_20440 PF13722 5TM C-terminal transporter carbon starvation CstA BED34_20440 PF02554 Carbon starvation protein CstA BED34_20450 PF01048 Phosphorylase superfamily BED34_20455 PF01738 Dienelactone hydrolase family BED34_20460 PF01717 Cobalamin-independent synthase, Catalytic domain BED34_20460 PF08267 Cobalamin-independent synthase, N-terminal domain BED34_20465 PF03466 LysR substrate binding domain BED34_20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BED34_20470 PF00892 EamA-like transporter family BED34_20475 PF03547 Membrane transport protein BED34_20480 PF03009 Glycerophosphoryl diester phosphodiesterase family BED34_20485 PF17912 MalK OB fold domain BED34_20485 PF00005 ABC transporter BED34_20490 PF00528 Binding-protein-dependent transport system inner membrane component BED34_20495 PF00528 Binding-protein-dependent transport system inner membrane component BED34_20500 PF13416 Bacterial extracellular solute-binding protein BED34_20535 PF00005 ABC transporter BED34_20540 PF00005 ABC transporter BED34_20540 PF12399 Branched-chain amino acid ATP-binding cassette transporter BED34_20545 PF11862 Domain of unknown function (DUF3382) BED34_20545 PF02653 Branched-chain amino acid transport system / permease component BED34_20550 PF02653 Branched-chain amino acid transport system / permease component BED34_20555 PF13458 Periplasmic binding protein BED34_20560 PF12568 Acetyltransferase (GNAT) domain, PanZ BED34_20575 PF00140 Sigma-70 factor, region 1.2 BED34_20575 PF04542 Sigma-70 region 2 BED34_20575 PF04545 Sigma-70, region 4 BED34_20580 PF02687 FtsX-like permease family BED34_20580 PF18075 FtsX extracellular domain BED34_20585 PF00005 ABC transporter BED34_20590 PF00448 SRP54-type protein, GTPase domain BED34_20590 PF02881 SRP54-type protein, helical bundle domain BED34_20600 PF06611 Protein of unknown function (DUF1145) BED34_20615 PF07947 YhhN family BED34_20620 PF00403 Heavy-metal-associated domain BED34_20625 PF01206 Sulfurtransferase TusA BED34_20630 PF02592 Putative vitamin uptake transporter BED34_20635 PF08786 DcrB BED34_20640 PF13183 4Fe-4S dicluster domain BED34_20640 PF02754 Cysteine-rich domain BED34_20645 PF00890 FAD binding domain BED34_20650 PF04324 BFD-like [2Fe-2S] binding domain BED34_20650 PF01266 FAD dependent oxidoreductase BED34_20655 PF07690 Major Facilitator Superfamily BED34_20660 PF03009 Glycerophosphoryl diester phosphodiesterase family BED34_20670 PF12146 Serine aminopeptidase, S33 BED34_20675 PF01810 LysE type translocator BED34_20680 PF01810 LysE type translocator BED34_20685 PF09382 RQC domain BED34_20685 PF16124 RecQ zinc-binding BED34_20685 PF00570 HRDC domain BED34_20685 PF00271 Helicase conserved C-terminal domain BED34_20685 PF00270 DEAD/DEAH box helicase BED34_20690 PF02253 Phospholipase A1 BED34_20695 PF03061 Thioesterase superfamily BED34_20700 PF00892 EamA-like transporter family BED34_20705 PF01544 CorA-like Mg2+ transporter protein BED34_20710 PF09370 Phosphoenolpyruvate hydrolase-like BED34_20725 PF13361 UvrD-like helicase C-terminal domain BED34_20725 PF00580 UvrD/REP helicase N-terminal domain BED34_20730 PF13419 Haloacid dehalogenase-like hydrolase BED34_20735 PF00589 Phage integrase family BED34_20735 PF02899 Phage integrase, N-terminal SAM-like domain BED34_20740 PF04340 Protein of unknown function, DUF484 BED34_20745 PF01678 Diaminopimelate epimerase BED34_20750 PF13627 Prokaryotic lipoprotein-attachment site BED34_20755 PF01491 Frataxin-like domain BED34_20765 PF12633 Adenylate cyclase NT domain BED34_20765 PF01295 Adenylate cyclase, class-I BED34_20770 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BED34_20770 PF03900 Porphobilinogen deaminase, C-terminal domain BED34_20775 PF02602 Uroporphyrinogen-III synthase HemD BED34_20780 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BED34_20785 PF07719 Tetratricopeptide repeat BED34_20785 PF07219 HemY protein N-terminus BED34_20790 PF01548 Transposase BED34_20790 PF02371 Transposase IS116/IS110/IS902 family BED34_20820 PF03808 Glycosyl transferase WecB/TagA/CpsF family BED34_20825 PF06899 WzyE protein, O-antigen assembly polymerase BED34_20830 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 BED34_20835 PF01943 Polysaccharide biosynthesis protein BED34_20840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BED34_20850 PF00483 Nucleotidyl transferase BED34_20855 PF16363 GDP-mannose 4,6 dehydratase BED34_20860 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BED34_20860 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BED34_20860 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BED34_20865 PF02350 UDP-N-acetylglucosamine 2-epimerase BED34_20870 PF02706 Chain length determinant protein BED34_20875 PF00953 Glycosyl transferase family 4 BED34_20880 PF01548 Transposase BED34_20880 PF02371 Transposase IS116/IS110/IS902 family BED34_20885 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_20885 PF07498 Rho termination factor, N-terminal domain BED34_20885 PF07497 Rho termination factor, RNA-binding domain BED34_20890 PF00085 Thioredoxin BED34_20895 PF00271 Helicase conserved C-terminal domain BED34_20895 PF00270 DEAD/DEAH box helicase BED34_20900 PF02541 Ppx/GppA phosphatase family BED34_20905 PF00295 Glycosyl hydrolases family 28 BED34_20910 PF00580 UvrD/REP helicase N-terminal domain BED34_20910 PF13361 UvrD-like helicase C-terminal domain BED34_20925 PF13592 Winged helix-turn helix BED34_20925 PF13358 DDE superfamily endonuclease BED34_20945 PF13784 Fic/DOC family N-terminal BED34_20945 PF02661 Fic/DOC family BED34_20980 PF00589 Phage integrase family BED34_20980 PF13356 Arm DNA-binding domain BED34_20980 PF14659 Phage integrase, N-terminal SAM-like domain BED34_20985 PF12833 Helix-turn-helix domain BED34_20990 PF02653 Branched-chain amino acid transport system / permease component BED34_20995 PF00005 ABC transporter BED34_21000 PF13407 Periplasmic binding protein domain BED34_21010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BED34_21010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BED34_21015 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BED34_21015 PF02753 Pili assembly chaperone PapD, C-terminal domain BED34_21030 PF01757 Acyltransferase family BED34_21035 PF07690 Major Facilitator Superfamily BED34_21040 PF00009 Elongation factor Tu GTP binding domain BED34_21040 PF03144 Elongation factor Tu domain 2 BED34_21040 PF09106 Elongation factor SelB, winged helix BED34_21040 PF09107 Elongation factor SelB, winged helix BED34_21045 PF03841 L-seryl-tRNA selenium transferase BED34_21045 PF12390 Selenocysteine synthase N terminal BED34_21050 PF04216 Protein involved in formate dehydrogenase formation BED34_21055 PF01292 Prokaryotic cytochrome b561 BED34_21060 PF09163 Formate dehydrogenase N, transmembrane BED34_21060 PF13247 4Fe-4S dicluster domain BED34_21065 PF01568 Molydopterin dinucleotide binding domain BED34_21065 PF00384 Molybdopterin oxidoreductase BED34_21065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED34_21070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BED34_21070 PF00384 Molybdopterin oxidoreductase BED34_21070 PF01568 Molydopterin dinucleotide binding domain BED34_21075 PF02634 FdhD/NarQ family BED34_21080 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BED34_21080 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BED34_21085 PF02203 Tar ligand binding domain homologue BED34_21085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_21085 PF00672 HAMP domain BED34_21090 PF03475 3-alpha domain BED34_21090 PF03473 MOSC domain BED34_21095 PF01850 PIN domain BED34_21100 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BED34_21105 PF10928 Protein of unknown function (DUF2810) BED34_21110 PF00155 Aminotransferase class I and II BED34_21110 PF00392 Bacterial regulatory proteins, gntR family BED34_21120 PF05068 Mannitol repressor BED34_21125 PF08125 Mannitol dehydrogenase C-terminal domain BED34_21125 PF01232 Mannitol dehydrogenase Rossmann domain BED34_21130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BED34_21130 PF02378 Phosphotransferase system, EIIC BED34_21130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BED34_21135 PF11254 Protein of unknown function (DUF3053) BED34_21140 PF02092 Glycyl-tRNA synthetase beta subunit BED34_21140 PF05746 DALR anticodon binding domain BED34_21145 PF02091 Glycyl-tRNA synthetase alpha subunit BED34_21150 PF03352 Methyladenine glycosylase BED34_21155 PF00583 Acetyltransferase (GNAT) family BED34_21180 PF07690 Major Facilitator Superfamily BED34_21185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BED34_21185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BED34_21190 PF00128 Alpha amylase, catalytic domain BED34_21195 PF00155 Aminotransferase class I and II BED34_21200 PF02080 TrkA-C domain BED34_21200 PF06826 Predicted Permease Membrane Region BED34_21205 PF01548 Transposase BED34_21205 PF02371 Transposase IS116/IS110/IS902 family BED34_21210 PF07690 Major Facilitator Superfamily BED34_21225 PF00970 Oxidoreductase FAD-binding domain BED34_21225 PF00175 Oxidoreductase NAD-binding domain BED34_21230 PF05656 Protein of unknown function (DUF805) BED34_21235 PF07305 Protein of unknown function (DUF1454) BED34_21240 PF00121 Triosephosphate isomerase BED34_21255 PF00365 Phosphofructokinase BED34_21260 PF01545 Cation efflux family BED34_21260 PF16916 Dimerisation domain of Zinc Transporter BED34_21265 PF07813 LTXXQ motif family protein BED34_21270 PF00486 Transcriptional regulatory protein, C terminal BED34_21270 PF00072 Response regulator receiver domain BED34_21275 PF16527 Two-component sensor protein CpxA, periplasmic domain BED34_21275 PF00672 HAMP domain BED34_21275 PF00512 His Kinase A (phospho-acceptor) domain BED34_21275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_21280 PF02805 Metal binding domain of Ada BED34_21280 PF12833 Helix-turn-helix domain BED34_21280 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BED34_21280 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BED34_21285 PF00588 SpoU rRNA Methylase family BED34_21290 PF06426 Serine acetyltransferase, N-terminal BED34_21290 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_21295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BED34_21295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BED34_21300 PF02556 Preprotein translocase subunit SecB BED34_21305 PF00462 Glutaredoxin BED34_21310 PF00581 Rhodanese-like domain BED34_21315 PF01676 Metalloenzyme superfamily BED34_21315 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BED34_21320 PF01551 Peptidase family M23 BED34_21325 PF04748 Divergent polysaccharide deacetylase BED34_21340 PF08240 Alcohol dehydrogenase GroES-like domain BED34_21340 PF00107 Zinc-binding dehydrogenase BED34_21345 PF00155 Aminotransferase class I and II BED34_21350 PF01370 NAD dependent epimerase/dehydratase family BED34_21355 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED34_21360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BED34_21365 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BED34_21370 PF00535 Glycosyl transferase family 2 BED34_21375 PF01467 Cytidylyltransferase-like BED34_21380 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BED34_21380 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BED34_21380 PF06827 Zinc finger found in FPG and IleRS BED34_21385 PF00471 Ribosomal protein L33 BED34_21390 PF00830 Ribosomal L28 family BED34_21395 PF04002 RadC-like JAB domain BED34_21400 PF04127 DNA / pantothenate metabolism flavoprotein BED34_21400 PF02441 Flavoprotein BED34_21405 PF00692 dUTPase BED34_21410 PF00440 Bacterial regulatory proteins, tetR family BED34_21415 PF00156 Phosphoribosyl transferase domain BED34_21420 PF03725 3' exoribonuclease family, domain 2 BED34_21420 PF01138 3' exoribonuclease family, domain 1 BED34_21425 PF03755 YicC-like family, N-terminal region BED34_21425 PF08340 Domain of unknown function (DUF1732) BED34_21430 PF00589 Phage integrase family BED34_21430 PF13356 Arm DNA-binding domain BED34_21450 PF08346 AntA/AntB antirepressor BED34_21450 PF10548 P22AR C-terminal domain BED34_21530 PF00990 Diguanylate cyclase, GGDEF domain BED34_21530 PF13426 PAS domain BED34_21530 PF00563 EAL domain BED34_21535 PF00378 Enoyl-CoA hydratase/isomerase BED34_21540 PF07662 Na+ dependent nucleoside transporter C-terminus BED34_21540 PF01773 Na+ dependent nucleoside transporter N-terminus BED34_21540 PF07670 Nucleoside recognition BED34_21545 PF13358 DDE superfamily endonuclease BED34_21545 PF13592 Winged helix-turn helix BED34_21555 PF03458 UPF0126 domain BED34_21565 PF00625 Guanylate kinase BED34_21570 PF01192 RNA polymerase Rpb6 BED34_21575 PF04607 Region found in RelA / SpoT proteins BED34_21575 PF02824 TGS domain BED34_21575 PF13291 ACT domain BED34_21580 PF00588 SpoU rRNA Methylase family BED34_21580 PF12105 SpoU, rRNA methylase, C-terminal BED34_21585 PF00271 Helicase conserved C-terminal domain BED34_21585 PF17191 RecG wedge domain BED34_21585 PF00270 DEAD/DEAH box helicase BED34_21590 PF03616 Sodium/glutamate symporter BED34_21595 PF00860 Permease family BED34_21600 PF05170 AsmA family BED34_21615 PF13693 Winged helix-turn-helix DNA-binding BED34_21620 PF09500 Putative thioesterase (yiiD_Cterm) BED34_21620 PF00583 Acetyltransferase (GNAT) family BED34_21625 PF02580 D-Tyr-tRNA(Tyr) deacylase BED34_21630 PF03631 Virulence factor BrkB BED34_21635 PF13419 Haloacid dehalogenase-like hydrolase BED34_21645 PF00120 Glutamine synthetase, catalytic domain BED34_21645 PF03951 Glutamine synthetase, beta-Grasp domain BED34_21655 PF00512 His Kinase A (phospho-acceptor) domain BED34_21655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_21655 PF00989 PAS fold BED34_21660 PF02954 Bacterial regulatory protein, Fis family BED34_21660 PF00158 Sigma-54 interaction domain BED34_21660 PF00072 Response regulator receiver domain BED34_21665 PF04055 Radical SAM superfamily BED34_21665 PF06969 HemN C-terminal domain BED34_21670 PF04220 Der GTPase activator (YihI) BED34_21675 PF01926 50S ribosome-binding GTPase BED34_21680 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BED34_21680 PF00476 DNA polymerase family A BED34_21680 PF01612 3'-5' exonuclease BED34_21680 PF01367 5'-3' exonuclease, C-terminal SAM fold BED34_21685 PF01323 DSBA-like thioredoxin domain BED34_21690 PF01636 Phosphotransferase enzyme family BED34_21695 PF06288 Protein of unknown function (DUF1040) BED34_21700 PF12804 MobA-like NTP transferase domain BED34_21705 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BED34_21710 PF13276 HTH-like domain BED34_21710 PF00665 Integrase core domain BED34_21710 PF13333 Integrase core domain BED34_21740 PF00392 Bacterial regulatory proteins, gntR family BED34_21740 PF07729 FCD domain BED34_21745 PF07690 Major Facilitator Superfamily BED34_21750 PF00356 Bacterial regulatory proteins, lacI family BED34_21755 PF00294 pfkB family carbohydrate kinase BED34_21760 PF13407 Periplasmic binding protein domain BED34_21765 PF02653 Branched-chain amino acid transport system / permease component BED34_21770 PF00005 ABC transporter BED34_21775 PF05025 RbsD / FucU transport protein family BED34_21780 PF02705 K+ potassium transporter BED34_21785 PF07728 AAA domain (dynein-related subfamily) BED34_21785 PF12592 Protein of unknown function (DUF3763) BED34_21785 PF17868 AAA lid domain BED34_21790 PF05762 VWA domain containing CoxE-like protein BED34_21800 PF03590 Aspartate-ammonia ligase BED34_21805 PF01037 Lrp/AsnC ligand binding domain BED34_21810 PF00258 Flavodoxin BED34_21815 PF01134 Glucose inhibited division protein A BED34_21815 PF13932 GidA associated domain BED34_21820 PF02527 rRNA small subunit methyltransferase G BED34_21825 PF03899 ATP synthase I chain BED34_21830 PF00119 ATP synthase A chain BED34_21835 PF00137 ATP synthase subunit C BED34_21840 PF00430 ATP synthase B/B' CF(0) BED34_21845 PF00213 ATP synthase delta (OSCP) subunit BED34_21850 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED34_21850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_21850 PF00306 ATP synthase alpha/beta chain, C terminal domain BED34_21855 PF00231 ATP synthase BED34_21860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_21860 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED34_21865 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BED34_21865 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BED34_21870 PF00132 Bacterial transferase hexapeptide (six repeats) BED34_21870 PF12804 MobA-like NTP transferase domain BED34_21875 PF01380 SIS domain BED34_21880 PF12849 PBP superfamily domain BED34_21885 PF00528 Binding-protein-dependent transport system inner membrane component BED34_21890 PF00528 Binding-protein-dependent transport system inner membrane component BED34_21895 PF00005 ABC transporter BED34_21900 PF01895 PhoU domain BED34_21910 PF00497 Bacterial extracellular solute-binding proteins, family 3 BED34_21920 PF00528 Binding-protein-dependent transport system inner membrane component BED34_21925 PF13419 Haloacid dehalogenase-like hydrolase BED34_21930 PF00860 Permease family BED34_21940 PF00072 Response regulator receiver domain BED34_21940 PF00196 Bacterial regulatory proteins, luxR family BED34_21945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BED34_21945 PF00512 His Kinase A (phospho-acceptor) domain BED34_21950 PF03358 NADPH-dependent FMN reductase BED34_21955 PF00672 HAMP domain BED34_21955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BED34_21955 PF02203 Tar ligand binding domain homologue BED34_21960 PF00528 Binding-protein-dependent transport system inner membrane component BED34_21965 PF00005 ABC transporter BED34_21965 PF09383 NIL domain BED34_21975 PF12241 Trans-2-enoyl-CoA reductase catalytic region BED34_21975 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BED34_21975 PF07055 Enoyl reductase FAD binding domain BED34_21980 PF10396 GTP-binding protein TrmE N-terminus BED34_21980 PF01926 50S ribosome-binding GTPase BED34_21980 PF12631 MnmE helical domain BED34_21985 PF14849 YidC periplasmic domain BED34_21985 PF02096 60Kd inner membrane protein BED34_21990 PF01809 Putative membrane protein insertion efficiency factor BED34_21995 PF00825 Ribonuclease P BED34_22000 PF00468 Ribosomal protein L34 BED34_22020 PF01527 Transposase BED34_22025 PF05932 Tir chaperone protein (CesT) family BED34_22030 PF09020 YopE, N terminal BED34_22030 PF03545 Yersinia virulence determinant (YopE) BED34_22040 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BED34_22045 PF02195 ParB-like nuclease domain BED34_22045 PF18090 Centromere-binding protein HTH domain BED34_22050 PF13614 AAA domain BED34_22080 PF09013 YopH, N-terminal BED34_22095 PF03895 YadA-like membrane anchor domain BED34_22095 PF05658 Head domain of trimeric autotransporter adhesin BED34_22095 PF05662 Coiled stalk of trimeric autotransporter adhesin BED34_22100 PF00892 EamA-like transporter family BED34_22110 PF01526 Tn3 transposase DDE domain BED34_22110 PF13700 Domain of unknown function (DUF4158) BED34_22110 PF13700 Domain of unknown function (DUF4158) BED34_22110 PF01526 Tn3 transposase DDE domain BED34_22115 PF00239 Resolvase, N terminal domain BED34_22115 PF02796 Helix-turn-helix domain of resolvase BED34_22120 PF03960 ArsC family BED34_22125 PF02040 Arsenical pump membrane protein BED34_22130 PF01022 Bacterial regulatory protein, arsR family BED34_22135 PF03358 NADPH-dependent FMN reductase BED34_22150 PF18272 single-stranded DNA binding TraI N-terminal subdomain BED34_22150 PF07057 DNA helicase TraI BED34_22150 PF18340 DNA relaxase TraI 2B/2B-like domain BED34_22150 PF08751 TrwC relaxase BED34_22165 PF10723 Replication regulatory protein RepB BED34_22170 PF02387 IncFII RepA protein family BED34_22190 PF01526 Tn3 transposase DDE domain BED34_22190 PF13700 Domain of unknown function (DUF4158) BED34_22195 PF00665 Integrase core domain BED34_22200 PF01527 Transposase BED34_22215 PF00069 Protein kinase domain BED34_22215 PF09632 Rac1-binding domain BED34_22225 PF05818 Enterobacterial TraT complement resistance protein BED34_22240 PF03543 Yersinia/Haemophilus virulence surface antigen BED34_22245 PF05932 Tir chaperone protein (CesT) family BED34_22250 PF01527 Transposase BED34_22270 PF12468 Type III secretion system leucine rich repeat protein BED34_22270 PF12468 Type III secretion system leucine rich repeat protein BED34_22280 PF00872 Transposase, Mutator family BED34_22285 PF05844 YopD protein BED34_22290 PF04888 Secretion system effector C (SseC) like family BED34_22295 PF07720 Tetratricopeptide repeat BED34_22300 PF04792 V antigen (LcrV) protein BED34_22305 PF07216 LcrG protein BED34_22310 PF09621 Type III secretion system regulator (LcrR) BED34_22315 PF00771 FHIPEP family BED34_22325 PF09474 Type III secretion system YscX (type_III_YscX) BED34_22335 PF09059 TyeA BED34_22340 PF07201 HrpJ-like domain BED34_22345 PF18269 T3SS EscN ATPase C-terminal domain BED34_22345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BED34_22345 PF02874 ATP synthase alpha/beta family, beta-barrel domain BED34_22350 PF07321 Type III secretion protein YscO BED34_22365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BED34_22370 PF00813 FliP family BED34_22375 PF01313 Bacterial export proteins, family 3 BED34_22380 PF01311 Bacterial export proteins, family 1 BED34_22385 PF01312 FlhB HrpN YscU SpaS Family BED34_22395 PF12833 Helix-turn-helix domain BED34_22400 PF17551 Family of unknown function (DUF5463) BED34_22405 PF05932 Tir chaperone protein (CesT) family BED34_22415 PF16693 Inner membrane component of T3SS, periplasmic domain BED34_22415 PF16697 Inner membrane component of T3SS, cytoplasmic domain BED34_22420 PF08988 Type III secretion system, cytoplasmic E component of needle BED34_22425 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF BED34_22430 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) BED34_22435 PF09025 YopR, type III needle-polymerisation regulator BED34_22440 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI BED34_22445 PF01514 Secretory protein of YscJ/FliF family BED34_22450 PF06578 YOP proteins translocation protein K (YscK) BED34_22455 PF02108 Flagellar assembly protein FliH BED34_22460 PF09013 YopH, N-terminal BED34_22465 PF00102 Protein-tyrosine phosphatase BED34_22465 PF09013 YopH, N-terminal BED34_22480 PF01527 Transposase BED34_22485 PF05932 Tir chaperone protein (CesT) family BED34_22490 PF09020 YopE, N terminal BED34_22490 PF03545 Yersinia virulence determinant (YopE) BED34_22500 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BED34_22505 PF02195 ParB-like nuclease domain BED34_22505 PF18090 Centromere-binding protein HTH domain BED34_22510 PF13614 AAA domain BED34_22530 PF09013 YopH, N-terminal