BED34_00075 SM00530 Helix-turn-helix XRE-family like proteins BED34_00300 SM00857 Resolvase, N terminal domain BED34_00305 SM00869 Autotransporter beta-domain BED34_00315 SM00912 haemagglutination activity domain BED34_00450 SM00634 Bacterial Ig-like domain (group 1) BED34_00465 SM00886 Stress responsive A/B Barrel Domain BED34_00490 SM00480 DNA polymerase III beta subunit BED34_00500 SM00387 Histidine kinase-like ATPases BED34_00500 SM00433 TopoisomeraseII BED34_00580 SM00382 ATPases associated with a variety of cellular activities BED34_00580 SM01086 C-terminal, D2-small domain, of ClpB protein BED34_00595 SM00354 helix_turn _helix lactose operon repressor BED34_00600 SM00487 DEAD-like helicases superfamily BED34_00600 SM00490 helicase superfamily c-terminal domain BED34_00640 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED34_00680 SM00382 ATPases associated with a variety of cellular activities BED34_00785 SM00382 ATPases associated with a variety of cellular activities BED34_00810 SM00382 ATPases associated with a variety of cellular activities BED34_00915 SM00354 helix_turn _helix lactose operon repressor BED34_00980 SM00387 Histidine kinase-like ATPases BED34_00985 SM00421 helix_turn_helix, Lux Regulon BED34_00985 SM00448 cheY-homologous receiver domain BED34_01020 SM00382 ATPases associated with a variety of cellular activities BED34_01025 SM00382 ATPases associated with a variety of cellular activities BED34_01070 SM00028 Tetratricopeptide repeats BED34_01080 SM00052 Putative diguanylate phosphodiesterase BED34_01120 SM00052 Putative diguanylate phosphodiesterase BED34_01140 SM00869 Autotransporter beta-domain BED34_01170 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BED34_01210 SM00382 ATPases associated with a variety of cellular activities BED34_01240 SM00382 ATPases associated with a variety of cellular activities BED34_01250 SM00954 Region found in RelA / SpoT proteins BED34_01385 SM00354 helix_turn _helix lactose operon repressor BED34_01405 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED34_01430 SM00642 Alpha-amylase domain BED34_01435 SM00642 Alpha-amylase domain BED34_01470 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_01470 SM01134 BED34_01470 BED34_01480 SM00450 Rhodanese Homology Domain BED34_01490 SM00421 helix_turn_helix, Lux Regulon BED34_01540 SM00899 BED34_01540 BED34_01545 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_01545 SM00732 Likely ribonuclease with RNase H fold. BED34_01575 SM00448 cheY-homologous receiver domain BED34_01575 SM00862 Transcriptional regulatory protein, C terminal BED34_01580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_01580 SM00387 Histidine kinase-like ATPases BED34_01580 SM00388 His Kinase A (phosphoacceptor) domain BED34_01595 SM00363 S4 RNA-binding domain BED34_01710 SM00354 helix_turn _helix lactose operon repressor BED34_01725 SM00382 ATPases associated with a variety of cellular activities BED34_01745 SM00100 Cyclic nucleotide-monophosphate binding domain BED34_01745 SM00419 helix_turn_helix, cAMP Regulatory protein BED34_01780 SM00062 Bacterial periplasmic substrate-binding proteins BED34_01810 SM00382 ATPases associated with a variety of cellular activities BED34_01875 SM00838 Elongation factor G C-terminus BED34_01875 SM00889 Elongation factor G, domain IV BED34_01895 SM01403 BED34_01895 BED34_01915 SM01382 BED34_01915 BED34_01915 SM01383 BED34_01915 BED34_01930 SM00322 K homology RNA-binding domain BED34_01950 SM01374 BED34_01950 BED34_01955 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED34_02020 SM00363 S4 RNA-binding domain BED34_02020 SM01390 BED34_02020 BED34_02025 SM00662 RNA polymerases D BED34_02040 SM00422 helix_turn_helix, mercury resistance BED34_02160 SM00346 helix_turn_helix isocitrate lyase regulation BED34_02165 SM01018 B12 binding domain BED34_02170 SM00912 haemagglutination activity domain BED34_02220 SM00382 ATPases associated with a variety of cellular activities BED34_02250 SM00563 Phosphate acyltransferases BED34_02295 SM00829 Enoylreductase BED34_02300 SM00382 ATPases associated with a variety of cellular activities BED34_02335 SM00530 Helix-turn-helix XRE-family like proteins BED34_02370 SM00382 ATPases associated with a variety of cellular activities BED34_02385 SM00062 Bacterial periplasmic substrate-binding proteins BED34_02410 SM00357 Cold shock protein domain BED34_02415 SM00357 Cold shock protein domain BED34_02455 SM00878 Biotin carboxylase C-terminal domain BED34_02480 SM00829 Enoylreductase BED34_02485 SM00052 Putative diguanylate phosphodiesterase BED34_02485 SM00267 diguanylate cyclase BED34_02510 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_02865 SM00530 Helix-turn-helix XRE-family like proteins BED34_02880 SM00354 helix_turn _helix lactose operon repressor BED34_02890 SM00642 Alpha-amylase domain BED34_02900 SM00460 Transglutaminase/protease-like homologues BED34_02955 SM00382 ATPases associated with a variety of cellular activities BED34_02985 SM00382 ATPases associated with a variety of cellular activities BED34_03020 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED34_03025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED34_03080 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_03085 SM00073 Histidine Phosphotransfer domain BED34_03085 SM00091 PAS domain BED34_03085 SM00387 Histidine kinase-like ATPases BED34_03085 SM00388 His Kinase A (phosphoacceptor) domain BED34_03085 SM00448 cheY-homologous receiver domain BED34_03100 SM00749 bacterial OsmY and nodulation domain BED34_03140 SM00857 Resolvase, N terminal domain BED34_03160 SM00530 Helix-turn-helix XRE-family like proteins BED34_03200 SM00829 Enoylreductase BED34_03260 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_03260 SM00895 BED34_03260 BED34_03280 SM00858 BED34_03280 BED34_03315 SM00869 Autotransporter beta-domain BED34_03325 SM00869 Autotransporter beta-domain BED34_03430 SM00400 zinc finger BED34_03430 SM00493 BED34_03430 BED34_03430 SM00766 DNA primase DnaG DnaB-binding BED34_03445 SM01207 BED34_03445 BED34_03450 SM00905 Dihydroneopterin aldolase BED34_03460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_03465 SM00287 Bacterial SH3 domain homologues BED34_03470 SM01118 BED34_03470 BED34_03545 SM00387 Histidine kinase-like ATPases BED34_03545 SM00433 TopoisomeraseII BED34_03565 SM00434 DNA Topoisomerase IV BED34_03570 SM00563 Phosphate acyltransferases BED34_03580 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_03595 SM00342 helix_turn_helix, arabinose operon control protein BED34_03720 SM00342 helix_turn_helix, arabinose operon control protein BED34_03745 SM00382 ATPases associated with a variety of cellular activities BED34_03780 SM00382 ATPases associated with a variety of cellular activities BED34_03810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_03855 SM00382 ATPases associated with a variety of cellular activities BED34_03880 SM00382 ATPases associated with a variety of cellular activities BED34_03900 SM00858 BED34_03900 BED34_04105 SM00052 Putative diguanylate phosphodiesterase BED34_04105 SM00091 PAS domain BED34_04105 SM00267 diguanylate cyclase BED34_04150 SM00354 helix_turn _helix lactose operon repressor BED34_04170 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_04325 SM00478 endonuclease III BED34_04325 SM00525 BED34_04325 BED34_04350 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_04360 SM01152 BED34_04360 BED34_04395 SM00732 Likely ribonuclease with RNase H fold. BED34_04420 SM00731 SprT homologues. BED34_04425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED34_04465 SM00861 Transketolase, pyrimidine binding domain BED34_04470 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED34_04485 SM00194 Protein tyrosine phosphatase, catalytic domain BED34_04485 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED34_04665 SM00257 Lysin motif BED34_04675 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BED34_04675 SM00534 ATPase domain of DNA mismatch repair MUTS family BED34_04745 SM00382 ATPases associated with a variety of cellular activities BED34_04755 SM00382 ATPases associated with a variety of cellular activities BED34_04765 SM00825 Beta-ketoacyl synthase BED34_04780 SM00822 BED34_04780 BED34_04790 SM01235 BED34_04790 BED34_04800 SM00838 Elongation factor G C-terminus BED34_04800 SM00889 Elongation factor G, domain IV BED34_04805 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED34_04845 SM01012 BED34_04845 BED34_04860 SM00382 ATPases associated with a variety of cellular activities BED34_04890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED34_04925 SM00382 ATPases associated with a variety of cellular activities BED34_04935 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED34_04980 SM01091 Transporter associated domain BED34_05000 SM00382 ATPases associated with a variety of cellular activities BED34_05000 SM00962 SRP54-type protein, GTPase domain BED34_05000 SM00963 SRP54-type protein, helical bundle domain BED34_05035 SM00448 cheY-homologous receiver domain BED34_05035 SM00850 LytTr DNA-binding domain BED34_05045 SM00830 Chorismate mutase type II BED34_05050 SM00830 Chorismate mutase type II BED34_05060 SM00382 ATPases associated with a variety of cellular activities BED34_05060 SM01086 C-terminal, D2-small domain, of ClpB protein BED34_05070 SM00363 S4 RNA-binding domain BED34_05130 SM00155 Phospholipase D. Active site motifs. BED34_05135 SM00881 CoA binding domain BED34_05140 SM01144 BED34_05140 BED34_05150 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED34_05170 SM00347 helix_turn_helix multiple antibiotic resistance protein BED34_05215 SM00062 Bacterial periplasmic substrate-binding proteins BED34_05230 SM00382 ATPases associated with a variety of cellular activities BED34_05365 SM00530 Helix-turn-helix XRE-family like proteins BED34_05390 SM00382 ATPases associated with a variety of cellular activities BED34_05625 SM01007 Class II Aldolase and Adducin N-terminal domain BED34_05655 SM00710 Parallel beta-helix repeats BED34_05695 SM00900 BED34_05695 BED34_05780 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED34_05790 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_05790 SM00866 BED34_05790 BED34_05810 SM01068 Putative carbohydrate binding domain BED34_05880 SM00448 cheY-homologous receiver domain BED34_05880 SM00862 Transcriptional regulatory protein, C terminal BED34_05885 SM00091 PAS domain BED34_05885 SM00387 Histidine kinase-like ATPases BED34_05885 SM00388 His Kinase A (phosphoacceptor) domain BED34_05905 SM00642 Alpha-amylase domain BED34_05950 SM01323 BED34_05950 BED34_06010 SM00861 Transketolase, pyrimidine binding domain BED34_06025 SM00981 BED34_06025 BED34_06110 SM00382 ATPases associated with a variety of cellular activities BED34_06110 SM00994 ClpX C4-type zinc finger BED34_06110 SM01086 C-terminal, D2-small domain, of ClpB protein BED34_06115 SM00382 ATPases associated with a variety of cellular activities BED34_06115 SM00464 Found in ATP-dependent protease La (LON) BED34_06120 SM00411 bacterial (prokaryotic) histone like domain BED34_06130 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED34_06160 SM00344 helix_turn_helix ASNC type BED34_06165 SM00382 ATPases associated with a variety of cellular activities BED34_06170 SM00382 ATPases associated with a variety of cellular activities BED34_06175 SM00938 Nitrogen regulatory protein P-II BED34_06220 SM00382 ATPases associated with a variety of cellular activities BED34_06315 SM00382 ATPases associated with a variety of cellular activities BED34_06325 SM00493 BED34_06325 BED34_06330 SM00387 Histidine kinase-like ATPases BED34_06430 SM00422 helix_turn_helix, mercury resistance BED34_06440 SM00244 prohibitin homologues BED34_06450 SM00822 BED34_06450 BED34_06460 SM00382 ATPases associated with a variety of cellular activities BED34_06475 SM01001 AIR carboxylase BED34_06490 SM00840 BED34_06490 BED34_06625 SM00382 ATPases associated with a variety of cellular activities BED34_06950 SM00530 Helix-turn-helix XRE-family like proteins BED34_06975 SM00382 ATPases associated with a variety of cellular activities BED34_07015 SM00507 HNH nucleases BED34_07075 SM01252 BED34_07075 BED34_07165 SM01040 BRO family, N-terminal domain BED34_07170 SM01252 BED34_07170 BED34_07320 SM00448 cheY-homologous receiver domain BED34_07320 SM00862 Transcriptional regulatory protein, C terminal BED34_07340 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BED34_07355 SM00382 ATPases associated with a variety of cellular activities BED34_07390 SM00357 Cold shock protein domain BED34_07400 SM00267 diguanylate cyclase BED34_07410 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_07425 SM00936 Penicillin-binding protein 5, C-terminal domain BED34_07480 SM00382 ATPases associated with a variety of cellular activities BED34_07495 SM00062 Bacterial periplasmic substrate-binding proteins BED34_07510 SM00116 Domain in cystathionine beta-synthase and other proteins. BED34_07510 SM01091 Transporter associated domain BED34_07525 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_07610 SM01081 Putative carbohydrate binding domain BED34_07625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_07660 SM00448 cheY-homologous receiver domain BED34_07660 SM00862 Transcriptional regulatory protein, C terminal BED34_07730 SM00796 Allophanate hydrolase subunit 1 BED34_07735 SM00797 Allophanate hydrolase subunit 2 BED34_07785 SM00861 Transketolase, pyrimidine binding domain BED34_07800 SM00881 CoA binding domain BED34_07905 SM00855 Phosphoglycerate mutase family BED34_07910 SM00477 DNA/RNA non-specific endonuclease BED34_07910 SM00892 DNA/RNA non-specific endonuclease BED34_07955 SM00382 ATPases associated with a variety of cellular activities BED34_07980 SM00382 ATPases associated with a variety of cellular activities BED34_08000 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_08000 SM00876 Biotin and Thiamin Synthesis associated domain BED34_08020 SM00382 ATPases associated with a variety of cellular activities BED34_08025 SM00487 DEAD-like helicases superfamily BED34_08025 SM00490 helicase superfamily c-terminal domain BED34_08040 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_08075 SM00382 ATPases associated with a variety of cellular activities BED34_08090 SM00487 DEAD-like helicases superfamily BED34_08090 SM00490 helicase superfamily c-terminal domain BED34_08105 SM00116 Domain in cystathionine beta-synthase and other proteins. BED34_08120 SM01118 BED34_08120 BED34_08125 SM00507 HNH nucleases BED34_08140 SM00382 ATPases associated with a variety of cellular activities BED34_08185 SM00382 ATPases associated with a variety of cellular activities BED34_08190 SM00450 Rhodanese Homology Domain BED34_08215 SM00382 ATPases associated with a variety of cellular activities BED34_08260 SM00487 DEAD-like helicases superfamily BED34_08260 SM00488 BED34_08260 BED34_08260 SM00491 BED34_08260 BED34_08285 SM00903 Flavin reductase like domain BED34_08295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED34_08295 SM00091 PAS domain BED34_08295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_08300 SM00382 ATPases associated with a variety of cellular activities BED34_08310 SM00062 Bacterial periplasmic substrate-binding proteins BED34_08310 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED34_08340 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BED34_08380 SM00382 ATPases associated with a variety of cellular activities BED34_08395 SM00852 Probable molybdopterin binding domain BED34_08410 SM00382 ATPases associated with a variety of cellular activities BED34_08435 SM00829 Enoylreductase BED34_08460 SM00354 helix_turn _helix lactose operon repressor BED34_08470 SM00382 ATPases associated with a variety of cellular activities BED34_08480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED34_08480 SM00382 ATPases associated with a variety of cellular activities BED34_08565 SM00919 Malic enzyme, NAD binding domain BED34_08565 SM01274 BED34_08565 BED34_08640 SM01091 Transporter associated domain BED34_08670 SM00382 ATPases associated with a variety of cellular activities BED34_08735 SM01350 BED34_08735 BED34_08790 SM00382 ATPases associated with a variety of cellular activities BED34_08840 SM00382 ATPases associated with a variety of cellular activities BED34_08875 SM00877 BED34_08875 BED34_08880 SM00877 BED34_08880 BED34_08920 SM00877 BED34_08920 BED34_08925 SM00877 BED34_08925 BED34_08955 SM00877 BED34_08955 BED34_08960 SM00877 BED34_08960 BED34_08970 SM00342 helix_turn_helix, arabinose operon control protein BED34_09050 SM00382 ATPases associated with a variety of cellular activities BED34_09070 SM00855 Phosphoglycerate mutase family BED34_09090 SM00421 helix_turn_helix, Lux Regulon BED34_09170 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_09170 SM01134 BED34_09170 BED34_09180 SM00260 Two component signalling adaptor domain BED34_09180 SM00448 cheY-homologous receiver domain BED34_09190 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_09210 SM00382 ATPases associated with a variety of cellular activities BED34_09230 SM00387 Histidine kinase-like ATPases BED34_09235 SM00421 helix_turn_helix, Lux Regulon BED34_09235 SM00448 cheY-homologous receiver domain BED34_09240 SM00448 cheY-homologous receiver domain BED34_09245 SM00387 Histidine kinase-like ATPases BED34_09260 SM00764 Citrate lyase ligase C-terminal domain BED34_09385 SM00421 helix_turn_helix, Lux Regulon BED34_09385 SM00448 cheY-homologous receiver domain BED34_09460 SM00344 helix_turn_helix ASNC type BED34_09470 SM00829 Enoylreductase BED34_09480 SM01038 Beta galactosidase small chain BED34_09485 SM00354 helix_turn _helix lactose operon repressor BED34_09490 SM00357 Cold shock protein domain BED34_09500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_09500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_09520 SM00831 Cation transporter/ATPase, N-terminus BED34_09525 SM00829 Enoylreductase BED34_09555 SM00073 Histidine Phosphotransfer domain BED34_09555 SM00260 Two component signalling adaptor domain BED34_09555 SM00387 Histidine kinase-like ATPases BED34_09555 SM01231 BED34_09555 BED34_09560 SM00260 Two component signalling adaptor domain BED34_09565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_09565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_09565 SM00319 Homologues of the ligand binding domain of Tar BED34_09570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_09570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_09570 SM00319 Homologues of the ligand binding domain of Tar BED34_09575 SM00138 Methyltransferase, chemotaxis proteins BED34_09580 SM00448 cheY-homologous receiver domain BED34_09585 SM00448 cheY-homologous receiver domain BED34_09630 SM00858 BED34_09630 BED34_09675 SM00047 Lysozyme subfamily 2 BED34_09735 SM00382 ATPases associated with a variety of cellular activities BED34_09780 SM00478 endonuclease III BED34_09785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_09790 SM00342 helix_turn_helix, arabinose operon control protein BED34_09840 SM00062 Bacterial periplasmic substrate-binding proteins BED34_09840 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED34_09850 SM00382 ATPases associated with a variety of cellular activities BED34_09910 SM00530 Helix-turn-helix XRE-family like proteins BED34_09930 SM00903 Flavin reductase like domain BED34_10100 SM00530 Helix-turn-helix XRE-family like proteins BED34_10180 SM01400 BED34_10180 BED34_10200 SM00937 BED34_10200 BED34_10230 SM00267 diguanylate cyclase BED34_10255 SM00481 DNA polymerase alpha chain like domain BED34_10330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_10330 SM00387 Histidine kinase-like ATPases BED34_10345 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_10405 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_10405 SM00866 BED34_10405 BED34_10430 SM00869 Autotransporter beta-domain BED34_10440 SM00257 Lysin motif BED34_10480 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_10480 SM01134 BED34_10480 BED34_10500 SM00363 S4 RNA-binding domain BED34_10570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED34_10575 SM00382 ATPases associated with a variety of cellular activities BED34_10590 SM00382 ATPases associated with a variety of cellular activities BED34_10600 SM00257 Lysin motif BED34_10655 SM00487 DEAD-like helicases superfamily BED34_10655 SM00491 BED34_10655 BED34_10675 SM00341 Helicase and RNase D C-terminal BED34_10675 SM00474 3'-5' exonuclease BED34_10760 SM01022 BED34_10760 BED34_10780 SM00972 Spore Coat Protein U domain BED34_10785 SM00972 Spore Coat Protein U domain BED34_10790 SM00972 Spore Coat Protein U domain BED34_10815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED34_10820 SM00945 ProQ/FINO family BED34_10825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED34_10825 SM00245 tail specific protease BED34_10850 SM00346 helix_turn_helix isocitrate lyase regulation BED34_10855 SM00644 BED34_10855 BED34_10885 SM00382 ATPases associated with a variety of cellular activities BED34_10975 SM00382 ATPases associated with a variety of cellular activities BED34_11025 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BED34_11050 SM00873 B3/4 domain BED34_11050 SM00874 tRNA synthetase B5 domain BED34_11050 SM00896 Ferredoxin-fold anticodon binding domain BED34_11055 SM00411 bacterial (prokaryotic) histone like domain BED34_11080 SM00382 ATPases associated with a variety of cellular activities BED34_11200 SM00382 ATPases associated with a variety of cellular activities BED34_11270 SM00354 helix_turn _helix lactose operon repressor BED34_11290 SM00479 BED34_11290 BED34_11345 SM00347 helix_turn_helix multiple antibiotic resistance protein BED34_11370 SM00363 S4 RNA-binding domain BED34_11425 SM00382 ATPases associated with a variety of cellular activities BED34_11430 SM00382 ATPases associated with a variety of cellular activities BED34_11460 SM00382 ATPases associated with a variety of cellular activities BED34_11495 SM00953 BED34_11495 BED34_11505 SM00091 PAS domain BED34_11505 SM00382 ATPases associated with a variety of cellular activities BED34_11515 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED34_11540 SM00148 Phospholipase C, catalytic domain (part); domain X BED34_11590 SM00382 ATPases associated with a variety of cellular activities BED34_11590 SM00487 DEAD-like helicases superfamily BED34_11590 SM00490 helicase superfamily c-terminal domain BED34_11590 SM00847 Helicase associated domain (HA2) Add an annotation BED34_11600 SM00530 Helix-turn-helix XRE-family like proteins BED34_11605 SM00020 Trypsin-like serine protease BED34_11620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_11620 SM00387 Histidine kinase-like ATPases BED34_11620 SM00388 His Kinase A (phosphoacceptor) domain BED34_11625 SM00448 cheY-homologous receiver domain BED34_11625 SM00862 Transcriptional regulatory protein, C terminal BED34_11650 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BED34_11650 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BED34_11665 SM00100 Cyclic nucleotide-monophosphate binding domain BED34_11665 SM00419 helix_turn_helix, cAMP Regulatory protein BED34_11685 SM00871 Bacterial transcription activator, effector binding domain BED34_11690 SM00822 BED34_11690 BED34_11735 SM00644 BED34_11735 BED34_11800 SM00421 helix_turn_helix, Lux Regulon BED34_11825 SM00354 helix_turn _helix lactose operon repressor BED34_11855 SM00342 helix_turn_helix, arabinose operon control protein BED34_11865 SM00382 ATPases associated with a variety of cellular activities BED34_11940 SM00342 helix_turn_helix, arabinose operon control protein BED34_11950 SM00900 BED34_11950 BED34_11960 SM00478 endonuclease III BED34_11960 SM00525 BED34_11960 BED34_12125 SM00382 ATPases associated with a variety of cellular activities BED34_12145 SM00530 Helix-turn-helix XRE-family like proteins BED34_12150 SM00530 Helix-turn-helix XRE-family like proteins BED34_12225 SM00357 Cold shock protein domain BED34_12225 SM00955 BED34_12225 BED34_12245 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_12245 SM01134 BED34_12245 BED34_12255 SM01007 Class II Aldolase and Adducin N-terminal domain BED34_12270 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BED34_12285 SM00530 Helix-turn-helix XRE-family like proteins BED34_12295 SM00028 Tetratricopeptide repeats BED34_12305 SM00014 Acid phosphatase homologues BED34_12330 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED34_12330 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED34_12330 SM00493 BED34_12330 BED34_12345 SM00822 BED34_12345 BED34_12360 SM00363 S4 RNA-binding domain BED34_12370 SM00481 DNA polymerase alpha chain like domain BED34_12405 SM00749 bacterial OsmY and nodulation domain BED34_12460 SM00155 Phospholipase D. Active site motifs. BED34_12470 SM00382 ATPases associated with a variety of cellular activities BED34_12475 SM00382 ATPases associated with a variety of cellular activities BED34_12520 SM00528 Domain in histone-like proteins of HNS family BED34_12525 SM00984 UDP binding domain BED34_12530 SM00448 cheY-homologous receiver domain BED34_12585 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BED34_12585 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BED34_12585 SM00493 BED34_12585 BED34_12605 SM00870 BED34_12605 BED34_12630 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BED34_12645 SM00763 PrkA AAA domain BED34_12675 SM00052 Putative diguanylate phosphodiesterase BED34_12675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED34_12675 SM00091 PAS domain BED34_12675 SM00267 diguanylate cyclase BED34_12685 SM01005 Alanine racemase, C-terminal domain BED34_12700 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_12740 SM00836 DALR anticodon binding domain BED34_12740 SM01016 Arginyl tRNA synthetase N terminal dom BED34_12820 SM00382 ATPases associated with a variety of cellular activities BED34_12870 SM01007 Class II Aldolase and Adducin N-terminal domain BED34_12880 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_12880 SM01134 BED34_12880 BED34_12885 SM00387 Histidine kinase-like ATPases BED34_12890 SM00448 cheY-homologous receiver domain BED34_13025 SM00479 BED34_13025 BED34_13040 SM01022 BED34_13040 BED34_13050 SM00487 DEAD-like helicases superfamily BED34_13050 SM00490 helicase superfamily c-terminal domain BED34_13085 SM01091 Transporter associated domain BED34_13120 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED34_13120 SM00091 PAS domain BED34_13120 SM00267 diguanylate cyclase BED34_13145 SM00357 Cold shock protein domain BED34_13190 SM00342 helix_turn_helix, arabinose operon control protein BED34_13210 SM00382 ATPases associated with a variety of cellular activities BED34_13215 SM00090 RIO-like kinase BED34_13230 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED34_13230 SM00091 PAS domain BED34_13230 SM00267 diguanylate cyclase BED34_13250 SM00342 helix_turn_helix, arabinose operon control protein BED34_13300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED34_13300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_13310 SM00354 helix_turn _helix lactose operon repressor BED34_13315 SM00640 Glycosyl hydrolases family 32 BED34_13365 SM01329 BED34_13365 BED34_13400 SM00448 cheY-homologous receiver domain BED34_13400 SM00862 Transcriptional regulatory protein, C terminal BED34_13405 SM00387 Histidine kinase-like ATPases BED34_13405 SM00388 His Kinase A (phosphoacceptor) domain BED34_13435 SM00382 ATPases associated with a variety of cellular activities BED34_13445 SM00487 DEAD-like helicases superfamily BED34_13445 SM00490 helicase superfamily c-terminal domain BED34_13445 SM00982 BED34_13445 BED34_13445 SM01058 CarD-like/TRCF domain BED34_13510 SM00382 ATPases associated with a variety of cellular activities BED34_13550 SM00825 Beta-ketoacyl synthase BED34_13560 SM00822 BED34_13560 BED34_13565 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BED34_13595 SM00363 S4 RNA-binding domain BED34_13600 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_13630 SM00421 helix_turn_helix, Lux Regulon BED34_13640 SM00450 Rhodanese Homology Domain BED34_13665 SM00421 helix_turn_helix, Lux Regulon BED34_13665 SM00448 cheY-homologous receiver domain BED34_13725 SM01091 Transporter associated domain BED34_13740 SM00421 helix_turn_helix, Lux Regulon BED34_13810 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BED34_13815 SM00992 Hemimethylated DNA-binding protein YccV like BED34_13820 SM00881 CoA binding domain BED34_13830 SM00851 MGS-like domain BED34_13885 SM00825 Beta-ketoacyl synthase BED34_13905 SM00382 ATPases associated with a variety of cellular activities BED34_13910 SM00981 BED34_13910 BED34_13960 SM00849 Metallo-beta-lactamase superfamily BED34_14015 SM00357 Cold shock protein domain BED34_14020 SM00357 Cold shock protein domain BED34_14025 SM01150 BED34_14025 BED34_14035 SM00382 ATPases associated with a variety of cellular activities BED34_14040 SM00849 Metallo-beta-lactamase superfamily BED34_14045 SM00411 bacterial (prokaryotic) histone like domain BED34_14050 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_14075 SM00870 BED34_14075 BED34_14125 SM00382 ATPases associated with a variety of cellular activities BED34_14135 SM00843 BED34_14135 BED34_14140 SM00344 helix_turn_helix ASNC type BED34_14150 SM00382 ATPases associated with a variety of cellular activities BED34_14155 SM00382 ATPases associated with a variety of cellular activities BED34_14165 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_14170 SM00382 ATPases associated with a variety of cellular activities BED34_14170 SM01086 C-terminal, D2-small domain, of ClpB protein BED34_14180 SM00357 Cold shock protein domain BED34_14185 SM00382 ATPases associated with a variety of cellular activities BED34_14250 SM00382 ATPases associated with a variety of cellular activities BED34_14255 SM00062 Bacterial periplasmic substrate-binding proteins BED34_14255 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED34_14270 SM00062 Bacterial periplasmic substrate-binding proteins BED34_14270 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BED34_14295 SM00382 ATPases associated with a variety of cellular activities BED34_14330 SM00014 Acid phosphatase homologues BED34_14335 SM01133 BED34_14335 BED34_14340 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_14340 SM01134 BED34_14340 BED34_14360 SM00936 Penicillin-binding protein 5, C-terminal domain BED34_14365 SM00116 Domain in cystathionine beta-synthase and other proteins. BED34_14380 SM00382 ATPases associated with a variety of cellular activities BED34_14380 SM00930 BED34_14380 BED34_14410 SM00382 ATPases associated with a variety of cellular activities BED34_14445 SM00518 AP endonuclease family 2 BED34_14470 SM00862 Transcriptional regulatory protein, C terminal BED34_14515 SM00841 Elongation factor P, C-terminal BED34_14515 SM01185 BED34_14515 BED34_14535 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_14535 SM00895 BED34_14535 BED34_14545 SM00833 Cobalamin synthesis protein cobW C-terminal domain BED34_14550 SM00014 Acid phosphatase homologues BED34_14565 SM00052 Putative diguanylate phosphodiesterase BED34_14585 SM00382 ATPases associated with a variety of cellular activities BED34_14600 SM00363 S4 RNA-binding domain BED34_14605 SM00487 DEAD-like helicases superfamily BED34_14605 SM00490 helicase superfamily c-terminal domain BED34_14675 SM01057 Eukaryotic-type carbonic anhydrase BED34_14715 SM00530 Helix-turn-helix XRE-family like proteins BED34_14730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_14730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_14780 SM00387 Histidine kinase-like ATPases BED34_14780 SM00388 His Kinase A (phosphoacceptor) domain BED34_14785 SM00421 helix_turn_helix, Lux Regulon BED34_14785 SM00448 cheY-homologous receiver domain BED34_14790 SM00387 Histidine kinase-like ATPases BED34_14790 SM00388 His Kinase A (phosphoacceptor) domain BED34_14790 SM00448 cheY-homologous receiver domain BED34_14795 SM00434 DNA Topoisomerase IV BED34_14835 SM00852 Probable molybdopterin binding domain BED34_14850 SM01060 BED34_14850 BED34_14860 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BED34_14910 SM00354 helix_turn _helix lactose operon repressor BED34_14975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED34_14975 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BED34_14980 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BED34_15015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_15055 SM00354 helix_turn _helix lactose operon repressor BED34_15090 SM00052 Putative diguanylate phosphodiesterase BED34_15105 SM00382 ATPases associated with a variety of cellular activities BED34_15120 SM00062 Bacterial periplasmic substrate-binding proteins BED34_15165 SM00859 Semialdehyde dehydrogenase, NAD binding domain BED34_15175 SM00342 helix_turn_helix, arabinose operon control protein BED34_15190 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_15230 SM00354 helix_turn _helix lactose operon repressor BED34_15270 SM00825 Beta-ketoacyl synthase BED34_15310 SM00463 Small MutS-related domain BED34_15385 SM00382 ATPases associated with a variety of cellular activities BED34_15420 SM00778 Zinc-binding domain of primase-helicase BED34_15490 SM00354 helix_turn _helix lactose operon repressor BED34_15495 SM00867 YceI-like domain BED34_15525 SM00382 ATPases associated with a variety of cellular activities BED34_15570 SM00382 ATPases associated with a variety of cellular activities BED34_15615 SM00448 cheY-homologous receiver domain BED34_15615 SM00850 LytTr DNA-binding domain BED34_15720 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BED34_15720 SM00292 breast cancer carboxy-terminal domain BED34_15720 SM00532 Ligase N family BED34_15725 SM00771 ZipA, C-terminal domain (FtsZ-binding) BED34_15755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_15755 SM00387 Histidine kinase-like ATPases BED34_15755 SM00388 His Kinase A (phosphoacceptor) domain BED34_15760 SM00448 cheY-homologous receiver domain BED34_15760 SM00862 Transcriptional regulatory protein, C terminal BED34_15770 SM00382 ATPases associated with a variety of cellular activities BED34_15780 SM00382 ATPases associated with a variety of cellular activities BED34_15825 SM01130 BED34_15825 BED34_15870 SM00919 Malic enzyme, NAD binding domain BED34_15870 SM01274 BED34_15870 BED34_15890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED34_15905 SM00421 helix_turn_helix, Lux Regulon BED34_15905 SM00448 cheY-homologous receiver domain BED34_16030 SM01130 BED34_16030 BED34_16095 SM00382 ATPases associated with a variety of cellular activities BED34_16130 SM00052 Putative diguanylate phosphodiesterase BED34_16130 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BED34_16130 SM00091 PAS domain BED34_16130 SM00267 diguanylate cyclase BED34_16160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_16160 SM00387 Histidine kinase-like ATPases BED34_16160 SM00388 His Kinase A (phosphoacceptor) domain BED34_16165 SM00448 cheY-homologous receiver domain BED34_16165 SM00862 Transcriptional regulatory protein, C terminal BED34_16180 SM00046 Diacylglycerol kinase catalytic domain (presumed) BED34_16210 SM00420 helix_turn_helix, Deoxyribose operon repressor BED34_16210 SM01134 BED34_16210 BED34_16215 SM00116 Domain in cystathionine beta-synthase and other proteins. BED34_16330 SM00116 Domain in cystathionine beta-synthase and other proteins. BED34_16330 SM01240 BED34_16330 BED34_16355 SM00382 ATPases associated with a variety of cellular activities BED34_16365 SM00564 beta-propeller repeat BED34_16385 SM00530 Helix-turn-helix XRE-family like proteins BED34_16390 SM00028 Tetratricopeptide repeats BED34_16400 SM00562 BED34_16400 BED34_16415 SM01359 BED34_16415 BED34_16415 SM01360 BED34_16415 BED34_16420 SM00869 Autotransporter beta-domain BED34_16450 SM00271 DnaJ molecular chaperone homology domain BED34_16545 SM00938 Nitrogen regulatory protein P-II BED34_16555 SM00382 ATPases associated with a variety of cellular activities BED34_16555 SM00448 cheY-homologous receiver domain BED34_16565 SM00387 Histidine kinase-like ATPases BED34_16565 SM00388 His Kinase A (phosphoacceptor) domain BED34_16575 SM01211 BED34_16575 BED34_16580 SM00062 Bacterial periplasmic substrate-binding proteins BED34_16640 SM00358 Double-stranded RNA binding motif BED34_16640 SM00535 Ribonuclease III family BED34_16690 SM00487 DEAD-like helicases superfamily BED34_16690 SM00490 helicase superfamily c-terminal domain BED34_16705 SM00248 ankyrin repeats BED34_16725 SM00986 Uracil DNA glycosylase superfamily BED34_16725 SM00987 UreE urease accessory protein, C-terminal domain BED34_16785 SM00342 helix_turn_helix, arabinose operon control protein BED34_16870 SM00988 UreE urease accessory protein, N-terminal domain BED34_16890 SM00382 ATPases associated with a variety of cellular activities BED34_16895 SM00382 ATPases associated with a variety of cellular activities BED34_16925 SM00450 Rhodanese Homology Domain BED34_16940 SM00357 Cold shock protein domain BED34_16965 SM00342 helix_turn_helix, arabinose operon control protein BED34_16985 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_17015 SM00382 ATPases associated with a variety of cellular activities BED34_17035 SM00479 BED34_17035 BED34_17050 SM00849 Metallo-beta-lactamase superfamily BED34_17055 SM00257 Lysin motif BED34_17130 SM00382 ATPases associated with a variety of cellular activities BED34_17130 SM00930 BED34_17130 BED34_17170 SM01322 BED34_17170 BED34_17190 SM00977 TilS substrate C-terminal domain BED34_17210 SM00481 DNA polymerase alpha chain like domain BED34_17240 SM00935 Outer membrane protein (OmpH-like) BED34_17250 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED34_17295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_17340 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED34_17340 SM00475 5'-3' exonuclease BED34_17385 SM00925 MltA specific insert domain BED34_17405 SM00646 BED34_17405 BED34_17465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BED34_17480 SM00927 DNA mismatch repair enzyme MutH BED34_17500 SM00563 Phosphate acyltransferases BED34_17510 SM00354 helix_turn _helix lactose operon repressor BED34_17535 SM00849 Metallo-beta-lactamase superfamily BED34_17555 SM00862 Transcriptional regulatory protein, C terminal BED34_17605 SM00382 ATPases associated with a variety of cellular activities BED34_17625 SM00947 Carbonic anhydrase BED34_17635 SM00822 BED34_17635 BED34_17645 SM00271 DnaJ molecular chaperone homology domain BED34_17655 SM00091 PAS domain BED34_17655 SM00267 diguanylate cyclase BED34_17680 SM00530 Helix-turn-helix XRE-family like proteins BED34_17690 SM00530 Helix-turn-helix XRE-family like proteins BED34_17795 SM00937 BED34_17795 BED34_17825 SM00387 Histidine kinase-like ATPases BED34_17825 SM00388 His Kinase A (phosphoacceptor) domain BED34_17830 SM00448 cheY-homologous receiver domain BED34_17830 SM00862 Transcriptional regulatory protein, C terminal BED34_17865 SM00822 BED34_17865 BED34_17900 SM01011 Aminopeptidase P, N-terminal domain BED34_17925 SM01192 BED34_17925 BED34_17925 SM01193 BED34_17925 BED34_17940 SM00954 Region found in RelA / SpoT proteins BED34_17950 SM00073 Histidine Phosphotransfer domain BED34_17950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_17950 SM00387 Histidine kinase-like ATPases BED34_17950 SM00388 His Kinase A (phosphoacceptor) domain BED34_17950 SM00448 cheY-homologous receiver domain BED34_17955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BED34_17960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_18010 SM00382 ATPases associated with a variety of cellular activities BED34_18020 SM00487 DEAD-like helicases superfamily BED34_18020 SM00490 helicase superfamily c-terminal domain BED34_18020 SM00847 Helicase associated domain (HA2) Add an annotation BED34_18080 SM00382 ATPases associated with a variety of cellular activities BED34_18085 SM00947 Carbonic anhydrase BED34_18140 SM00342 helix_turn_helix, arabinose operon control protein BED34_18165 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_18165 SM00895 BED34_18165 BED34_18180 SM00644 BED34_18180 BED34_18205 SM01240 BED34_18205 BED34_18230 SM00957 SecA DEAD-like domain BED34_18230 SM00958 SecA preprotein cross-linking domain BED34_18250 SM00864 Tubulin/FtsZ family, GTPase domain BED34_18250 SM00865 Tubulin/FtsZ family, C-terminal domain BED34_18255 SM00842 Cell division protein FtsA BED34_18330 SM00354 helix_turn _helix lactose operon repressor BED34_18355 SM00917 LeuA allosteric (dimerisation) domain BED34_18360 SM01329 BED34_18360 BED34_18425 SM00382 ATPases associated with a variety of cellular activities BED34_18435 SM00486 DNA polymerase type-B family BED34_18440 SM00487 DEAD-like helicases superfamily BED34_18440 SM00490 helicase superfamily c-terminal domain BED34_18445 SM00634 Bacterial Ig-like domain (group 1) BED34_18455 SM00271 DnaJ molecular chaperone homology domain BED34_18475 SM00650 Ribosomal RNA adenine dimethylases BED34_18510 SM00851 MGS-like domain BED34_18510 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BED34_18515 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BED34_18545 SM00904 Riboflavin kinase BED34_18570 SM00271 DnaJ molecular chaperone homology domain BED34_18585 SM00247 Beta/gamma crystallins BED34_18595 SM00852 Probable molybdopterin binding domain BED34_18635 SM00448 cheY-homologous receiver domain BED34_18635 SM00862 Transcriptional regulatory protein, C terminal BED34_18645 SM00342 helix_turn_helix, arabinose operon control protein BED34_18645 SM00871 Bacterial transcription activator, effector binding domain BED34_18650 SM00855 Phosphoglycerate mutase family BED34_18670 SM00831 Cation transporter/ATPase, N-terminus BED34_18680 SM00267 diguanylate cyclase BED34_18690 SM00382 ATPases associated with a variety of cellular activities BED34_18705 SM00829 Enoylreductase BED34_18740 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BED34_18745 SM01133 BED34_18745 BED34_18770 SM00749 bacterial OsmY and nodulation domain BED34_18815 SM00267 diguanylate cyclase BED34_18845 SM00640 Glycosyl hydrolases family 32 BED34_18850 SM00354 helix_turn _helix lactose operon repressor BED34_18855 SM00091 PAS domain BED34_18905 SM01120 BED34_18905 BED34_18960 SM00382 ATPases associated with a variety of cellular activities BED34_18980 SM01133 BED34_18980 BED34_19090 SM00382 ATPases associated with a variety of cellular activities BED34_19095 SM00382 ATPases associated with a variety of cellular activities BED34_19125 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_19125 SM00866 BED34_19125 BED34_19150 SM00382 ATPases associated with a variety of cellular activities BED34_19155 SM00382 ATPases associated with a variety of cellular activities BED34_19200 SM00382 ATPases associated with a variety of cellular activities BED34_19290 SM00487 DEAD-like helicases superfamily BED34_19290 SM00490 helicase superfamily c-terminal domain BED34_19295 SM00028 Tetratricopeptide repeats BED34_19300 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_19300 SM00322 K homology RNA-binding domain BED34_19305 SM01387 BED34_19305 BED34_19320 SM00173 Ras subfamily of RAS small GTPases BED34_19325 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_19325 SM00322 K homology RNA-binding domain BED34_19360 SM00382 ATPases associated with a variety of cellular activities BED34_19370 SM01103 BED34_19370 BED34_19385 SM00448 cheY-homologous receiver domain BED34_19385 SM00862 Transcriptional regulatory protein, C terminal BED34_19390 SM00387 Histidine kinase-like ATPases BED34_19390 SM00388 His Kinase A (phosphoacceptor) domain BED34_19455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_19455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_19485 SM01091 Transporter associated domain BED34_19575 SM00967 RNA 2'-O ribose methyltransferase substrate binding BED34_19580 SM00316 Ribosomal protein S1-like RNA-binding domain BED34_19580 SM00357 Cold shock protein domain BED34_19580 SM00955 BED34_19580 BED34_19590 SM00788 Adenylosuccinate synthetase BED34_19600 SM00244 prohibitin homologues BED34_19605 SM00244 prohibitin homologues BED34_19625 SM00853 MutL C terminal dimerisation domain BED34_19625 SM01340 BED34_19625 BED34_19630 SM00257 Lysin motif BED34_19630 SM00646 BED34_19630 BED34_19660 SM00479 BED34_19660 BED34_19720 SM00841 Elongation factor P, C-terminal BED34_19720 SM01185 BED34_19720 BED34_19745 SM00883 Chaperonin 10 Kd subunit BED34_19810 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_19850 SM00382 ATPases associated with a variety of cellular activities BED34_19890 SM00382 ATPases associated with a variety of cellular activities BED34_19895 SM00965 Secretin and TonB N terminus short domain BED34_19960 SM00382 ATPases associated with a variety of cellular activities BED34_20010 SM00342 helix_turn_helix, arabinose operon control protein BED34_20080 SM00421 helix_turn_helix, Lux Regulon BED34_20080 SM00448 cheY-homologous receiver domain BED34_20145 SM00798 AICARFT/IMPCHase bienzyme BED34_20145 SM00851 MGS-like domain BED34_20150 SM01209 BED34_20150 BED34_20150 SM01210 BED34_20150 BED34_20160 SM00411 bacterial (prokaryotic) histone like domain BED34_20215 SM00876 Biotin and Thiamin Synthesis associated domain BED34_20225 SM00663 RNA polymerase I subunit A N-terminus BED34_20250 SM00649 Ribosomal protein L11/L12 BED34_20255 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED34_20255 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BED34_20385 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BED34_20390 SM01004 Delta-aminolevulinic acid dehydratase BED34_20485 SM00382 ATPases associated with a variety of cellular activities BED34_20535 SM00382 ATPases associated with a variety of cellular activities BED34_20540 SM00382 ATPases associated with a variety of cellular activities BED34_20585 SM00382 ATPases associated with a variety of cellular activities BED34_20590 SM00382 ATPases associated with a variety of cellular activities BED34_20590 SM00962 SRP54-type protein, GTPase domain BED34_20590 SM00963 SRP54-type protein, helical bundle domain BED34_20685 SM00341 Helicase and RNase D C-terminal BED34_20685 SM00487 DEAD-like helicases superfamily BED34_20685 SM00490 helicase superfamily c-terminal domain BED34_20685 SM00956 BED34_20685 BED34_20755 SM01219 BED34_20755 BED34_20860 SM00984 UDP binding domain BED34_20885 SM00357 Cold shock protein domain BED34_20885 SM00382 ATPases associated with a variety of cellular activities BED34_20885 SM00959 Rho termination factor, N-terminal domain BED34_20895 SM00487 DEAD-like helicases superfamily BED34_20895 SM00490 helicase superfamily c-terminal domain BED34_20905 SM00060 Fibronectin type 3 domain BED34_20950 SM00778 Zinc-binding domain of primase-helicase BED34_20950 SM00885 D5 N terminal like BED34_20985 SM00342 helix_turn_helix, arabinose operon control protein BED34_20995 SM00382 ATPases associated with a variety of cellular activities BED34_21025 SM00342 helix_turn_helix, arabinose operon control protein BED34_21070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BED34_21085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_21085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_21085 SM01358 BED34_21085 BED34_21100 SM00966 SpoVT / AbrB like domain BED34_21110 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_21190 SM00642 Alpha-amylase domain BED34_21270 SM00448 cheY-homologous receiver domain BED34_21270 SM00862 Transcriptional regulatory protein, C terminal BED34_21275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_21275 SM00387 Histidine kinase-like ATPases BED34_21275 SM00388 His Kinase A (phosphoacceptor) domain BED34_21280 SM00342 helix_turn_helix, arabinose operon control protein BED34_21290 SM00971 Serine acetyltransferase, N-terminal BED34_21310 SM00450 Rhodanese Homology Domain BED34_21340 SM00829 Enoylreductase BED34_21380 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BED34_21380 SM01232 BED34_21380 BED34_21480 SM00778 Zinc-binding domain of primase-helicase BED34_21520 SM00849 Metallo-beta-lactamase superfamily BED34_21530 SM00052 Putative diguanylate phosphodiesterase BED34_21530 SM00091 PAS domain BED34_21530 SM00267 diguanylate cyclase BED34_21565 SM00072 Guanylate kinase homologues. BED34_21570 SM01409 BED34_21570 BED34_21575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BED34_21575 SM00954 Region found in RelA / SpoT proteins BED34_21585 SM00487 DEAD-like helicases superfamily BED34_21585 SM00490 helicase superfamily c-terminal domain BED34_21605 SM00421 helix_turn_helix, Lux Regulon BED34_21610 SM00421 helix_turn_helix, Lux Regulon BED34_21645 SM01230 BED34_21645 BED34_21655 SM00091 PAS domain BED34_21655 SM00387 Histidine kinase-like ATPases BED34_21655 SM00388 His Kinase A (phosphoacceptor) domain BED34_21660 SM00382 ATPases associated with a variety of cellular activities BED34_21660 SM00448 cheY-homologous receiver domain BED34_21665 SM00729 Elongator protein 3, MiaB family, Radical SAM BED34_21680 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BED34_21680 SM00474 3'-5' exonuclease BED34_21680 SM00475 5'-3' exonuclease BED34_21680 SM00482 DNA polymerase A domain BED34_21740 SM00345 helix_turn_helix gluconate operon transcriptional repressor BED34_21740 SM00895 BED34_21740 BED34_21750 SM00354 helix_turn _helix lactose operon repressor BED34_21770 SM00382 ATPases associated with a variety of cellular activities BED34_21785 SM00382 ATPases associated with a variety of cellular activities BED34_21790 SM00327 von Willebrand factor (vWF) type A domain BED34_21805 SM00344 helix_turn_helix ASNC type BED34_21815 SM01228 BED34_21815 BED34_21860 SM00382 ATPases associated with a variety of cellular activities BED34_21895 SM00382 ATPases associated with a variety of cellular activities BED34_21910 SM00062 Bacterial periplasmic substrate-binding proteins BED34_21940 SM00421 helix_turn_helix, Lux Regulon BED34_21940 SM00448 cheY-homologous receiver domain BED34_21945 SM00387 Histidine kinase-like ATPases BED34_21945 SM00388 His Kinase A (phosphoacceptor) domain BED34_21955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BED34_21955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BED34_21965 SM00382 ATPases associated with a variety of cellular activities BED34_21965 SM00930 BED34_21965 BED34_21990 SM01234 BED34_21990 BED34_22045 SM00470 ParB-like nuclease domain BED34_22115 SM00857 Resolvase, N terminal domain BED34_22130 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BED34_22160 SM00155 Phospholipase D. Active site motifs. BED34_22215 SM00220 Serine/Threonine protein kinases, catalytic domain BED34_22270 SM00364 Leucine-rich repeats, bacterial type BED34_22345 SM00382 ATPases associated with a variety of cellular activities BED34_22395 SM00342 helix_turn_helix, arabinose operon control protein BED34_22465 SM00194 Protein tyrosine phosphatase, catalytic domain BED34_22465 SM00404 Protein tyrosine phosphatase, catalytic domain motif BED34_22505 SM00470 ParB-like nuclease domain