locus_tag old_locus_tag gene Name start end strand product note type ID NCBI tRNA-Trp (CCA) tRNA-Trp (CCA) 166220 166295 + tRNA-Trp tRNA gene146 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 314127 315615 + 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene277 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 3607805 3607881 + tRNA-Met tRNA gene3261 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Arg (TCT) tRNA-Arg (TCT) 3311810 3311886 - tRNA-Arg tRNA gene2997 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Glu (TTC) tRNA-Glu (TTC) 356419 356494 + tRNA-Glu tRNA gene315 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Thr (GGT) tRNA-Thr (GGT) 324433 324508 + tRNA-Thr tRNA gene288 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 17506 18994 + 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene15 http://www.ncbi.nlm.nih.gov/gene/?term= ssrS ssrS 3711866 3712059 + gene gene3352 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ala (GGC) tRNA-Ala (GGC) 1354016 1354091 - tRNA-Ala tRNA gene1212 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 1021373 1024366 + 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Citrobacter freundii 23S EMBL:U77928) rRNA gene893 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (CCC) tRNA-Gly (CCC) 3685747 3685820 - tRNA-Gly tRNA gene3328 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 4021243 4021319 + tRNA-Met tRNA gene3641 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 4239648 4242641 - 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene3835 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (GAC) tRNA-Val (GAC) 2365851 2365927 + tRNA-Val tRNA gene2131 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Pro (TGG) tRNA-Pro (TGG) 4469630 4469706 - tRNA-Pro tRNA gene4041 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Pro (GGG) tRNA-Pro (GGG) 1591923 1591999 - tRNA-Pro tRNA gene1418 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Arg (ACG) tRNA-Arg (ACG) 963018 963094 + tRNA-Arg tRNA gene828 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (TCC) tRNA-Gly (TCC) 2002864 2002938 + tRNA-Gly tRNA gene1790 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 4243342 4244830 - 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene3838 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Thr (TGT) tRNA-Thr (TGT) 323856 323931 + tRNA-Thr tRNA gene285 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 19674 22667 + 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene17 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Glu (TTC) tRNA-Glu (TTC) 315840 315915 + tRNA-Glu tRNA gene278 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 22667 22908 + 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene18 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ile (GAT) tRNA-Ile (GAT) 4243137 4243213 - tRNA-Ile tRNA gene3837 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 356873 359866 + 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene316 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 3607677 3607753 + tRNA-Met tRNA gene3260 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gln (TTG) tRNA-Gln (TTG) 3253325 3253399 + tRNA-Gln tRNA gene2935 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (GCC) tRNA-Gly (GCC) 437653 437728 + tRNA-Gly tRNA gene384 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (GAC) tRNA-Val (GAC) 2365976 2366052 + tRNA-Val tRNA gene2132 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ser (TGA) tRNA-Ser (TGA) 1796717 1796804 + tRNA-Ser tRNA gene1585 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 160552 162040 + 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene140 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 3550757 3552245 - 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene3203 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ser (GGA) tRNA-Ser (GGA) 2613470 2613559 + tRNA-Ser tRNA gene2372 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (TCC) tRNA-Gly (TCC) 324352 324426 + tRNA-Gly tRNA gene287 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ala (GGC) tRNA-Ala (GGC) 1354171 1354246 - tRNA-Ala tRNA gene1213 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (CAG) tRNA-Leu (CAG) 218170 218256 + tRNA-Leu tRNA gene189 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (TAC) tRNA-Val (TAC) 1356339 1356414 + tRNA-Val tRNA gene1217 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Arg (CCG) tRNA-Arg (CCG) 217919 217995 + tRNA-Arg tRNA gene187 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (TAC) tRNA-Val (TAC) 1356094 1356169 + tRNA-Val tRNA gene1215 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ala (TGC) tRNA-Ala (TGC) 162320 162395 + tRNA-Ala tRNA gene142 http://www.ncbi.nlm.nih.gov/gene/?term= ffs ffs 3388000 3388116 - gene gene3067 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (TTT) tRNA-Lys (TTT) 3185886 3185958 - tRNA-Lys tRNA gene2876 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (TTT) tRNA-Lys (TTT) 3185286 3185361 - tRNA-Lys tRNA gene2873 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Thr (TGT) tRNA-Thr (TGT) 1573364 1573439 + tRNA-Thr tRNA gene1402 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (TTT) tRNA-Lys (TTT) 3185720 3185795 - tRNA-Lys tRNA gene2875 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asn (GTT) tRNA-Asn (GTT) 2881784 2881859 + tRNA-Asn tRNA gene2600 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ser (TGA) tRNA-Ser (TGA) 1573270 1573357 + tRNA-Ser tRNA gene1401 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Thr (GGT) tRNA-Thr (GGT) 4239324 4239399 - tRNA-Thr tRNA gene3833 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Cys (GCA) tRNA-Cys (GCA) 2013546 2013619 - tRNA-Cys tRNA gene1806 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asp (GTC) tRNA-Asp (GTC) 1049625 1049701 + tRNA-Asp tRNA gene924 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 3607498 3607574 + tRNA-Met tRNA gene3259 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Arg (ACG) tRNA-Arg (ACG) 963153 963229 + tRNA-Arg tRNA gene829 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asn (GTT) tRNA-Asn (GTT) 2893538 2893613 + tRNA-Asn tRNA gene2608 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 165734 165970 + 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene144 http://www.ncbi.nlm.nih.gov/gene/?term= 3828040 3828092 - tRNA-Phe duplicated fragment of tRNA-phe thought to be associated with insertion of YAPI pathogenicity island tRNA rna130 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 3252927 3253003 + tRNA-Met tRNA gene2932 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-His (GTG) tRNA-His (GTG) 218079 218154 + tRNA-His tRNA gene188 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 3253431 3253507 + tRNA-Met tRNA gene2936 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (CAG) tRNA-Leu (CAG) 643860 643946 - tRNA-Leu tRNA gene566 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ala (TGC) tRNA-Ala (TGC) 3550402 3550477 - tRNA-Ala tRNA gene3201 http://www.ncbi.nlm.nih.gov/gene/?term= micF micF 1571499 1571589 - gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (GCC) tRNA-Gly (GCC) 437503 437578 + tRNA-Gly tRNA gene383 http://www.ncbi.nlm.nih.gov/gene/?term= ompF CAL11641.1 1757957 1759096 - putative outer membrane porin F protein CDS rna73 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Tyr (GTA) tRNA-Tyr (GTA) 323950 324034 + tRNA-Tyr tRNA gene286 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ala (TGC) tRNA-Ala (TGC) 4242987 4243062 - tRNA-Ala tRNA gene3836 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Phe (GAA) tRNA-Phe (GAA) 3761922 3761997 + tRNA-Phe tRNA gene3400 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 1024366 1024602 + 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene894 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (CAG) tRNA-Leu (CAG) 644011 644097 - tRNA-Leu tRNA gene567 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (CAA) tRNA-Leu (CAA) 579198 579282 + tRNA-Leu tRNA gene511 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Met (CAT) tRNA-Met (CAT) 500828 500904 + tRNA-Met tRNA gene445 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (CTT) tRNA-Lys (CTT) 2133260 2133335 + tRNA-Lys tRNA gene1925 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gln (CTG) tRNA-Gln (CTG) 3253513 3253587 + tRNA-Gln tRNA gene2937 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (GAC) tRNA-Val (GAC) 2366095 2366171 + tRNA-Val tRNA gene2133 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (TAG) tRNA-Leu (TAG) 3253019 3253103 + tRNA-Leu tRNA gene2933 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asn (GTT) tRNA-Asn (GTT) 2810915 2810990 + tRNA-Asn tRNA gene2552 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (GCC) tRNA-Gly (GCC) 2013670 2013745 - tRNA-Gly tRNA gene1807 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asp (GTC) tRNA-Asp (GTC) 1024722 1024798 + tRNA-Asp tRNA gene895 http://www.ncbi.nlm.nih.gov/gene/?term= meoA CAL11493.1 1571913 1573016 + outer membrane protein C%2C porin CDS rna68 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ile (GAT) tRNA-Ile (GAT) 162169 162245 + tRNA-Ile tRNA gene141 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Val (TAC) tRNA-Val (TAC) 1356224 1356299 + tRNA-Val tRNA gene1216 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 354706 356194 + 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene314 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 359866 360103 + 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene317 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 3547063 3550056 - 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene3200 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (TAA) tRNA-Leu (TAA) 2013450 2013535 - tRNA-Leu tRNA gene1805 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Pro (TGG) tRNA-Pro (TGG) 218332 218408 + tRNA-Pro tRNA gene190 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ser (GGA) tRNA-Ser (GGA) 2614794 2614883 + tRNA-Ser tRNA gene2374 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 4239160 4239290 - 5S ribosomal RNA similar to part of the 5SrRNA rRNA gene3832 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (TTT) tRNA-Lys (TTT) 3185420 3185495 - tRNA-Lys tRNA gene2874 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Glu (TTC) tRNA-Glu (TTC) 1020919 1020994 + tRNA-Glu tRNA gene892 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Arg (CCT) tRNA-Arg (CCT) 1405212 1405286 - tRNA-Arg tRNA gene1264 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ser (GCT) tRNA-Ser (GCT) 962917 963009 + tRNA-Ser tRNA gene827 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Thr (CGT) tRNA-Thr (CGT) 2002787 2002862 + tRNA-Thr tRNA gene1789 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Lys (TTT) tRNA-Lys (TTT) 1356606 1356681 + tRNA-Lys tRNA gene1218 http://www.ncbi.nlm.nih.gov/gene/?term= 16S rRNA 16S rRNA 1019206 1020694 + 16S ribosomal RNA match to 16S_rRNA 1..1461 (Y.enterocolitica 16S) rRNA gene891 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Phe (GAA) tRNA-Phe (GAA) 411468 411543 - tRNA-Phe tRNA gene357 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 3546822 3547063 - 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene3199 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Ile (GAT) tRNA-Ile (GAT) 3550552 3550628 - tRNA-Ile tRNA gene3202 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 4239407 4239648 - 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene3834 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gln (TTG) tRNA-Gln (TTG) 3253127 3253201 + tRNA-Gln tRNA gene2934 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-SelC(p) (TCA) tRNA-SelC(p) (TCA) 4504182 4504272 - tRNA-Sec codon recognized: UGA%3B anticodon: UCA selenocysteine tRNA%3B go_component: cytoplasm [goid 0005737]%3B go_process: tRNA metabolism [goid 0006399] tRNA gene4072 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Leu (GAG) tRNA-Leu (GAG) 500681 500767 + tRNA-Leu tRNA gene444 http://www.ncbi.nlm.nih.gov/gene/?term= ssrA ssrA 1116169 1116549 - gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Glu (TTC) tRNA-Glu (TTC) 19220 19295 + tRNA-Glu tRNA gene16 http://www.ncbi.nlm.nih.gov/gene/?term= csrB csrB 3595392 3595708 - gene gene3246 http://www.ncbi.nlm.nih.gov/gene/?term= 5S rRNA 5S rRNA 319287 319527 + 5S ribosomal RNA match to 5SrRNA 1..240 Y.enterocolitica rRNA gene280 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Asp (GTC) tRNA-Asp (GTC) 166090 166166 + tRNA-Asp tRNA gene145 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Gly (GCC) tRNA-Gly (GCC) 437336 437411 + tRNA-Gly tRNA gene382 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 162741 165734 + 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene143 http://www.ncbi.nlm.nih.gov/gene/?term= tRNA-Tyr (GTA) tRNA-Tyr (GTA) 2460533 2460617 + tRNA-Tyr tRNA gene2213 http://www.ncbi.nlm.nih.gov/gene/?term= 3185592 3185662 - tRNA Pseudo anticodon TTT pseudogenic_tRNA rna103 http://www.ncbi.nlm.nih.gov/gene/?term= 23S rRNA 23S rRNA 316294 319287 + 23S ribosomal RNA match to 23S_rRNA 1..2994 (Y. enterocolitica 23S EMBL:U77925%2C Y.pestis KIM 98 38dentity%2C Citrobacter freundii 23S EMBL:U77928 94 38dentity) rRNA gene279 http://www.ncbi.nlm.nih.gov/gene/?term= YE0001 YE0001 YE0001 270 710 - putative flavoprotein gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=YE0001 YE0002 YE0002 asnC asnC 802 1263 - regulatory protein gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=YE0002 YE0003 YE0003 asnA asnA 1449 2441 + aspartate-ammonia ligase gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=YE0003 YE0004 YE0004 YE0004 2595 3266 + putative membrane protein Similar to Ralstonia solanacearum probable transmembrane protein RSP0410 or RS00867 SWALL:Q8XSQ7 (EMBL:AL646078) (224 aa) fasta scores: E(): 7.3e-36%2C46.54 38d in 217 aa%2C and to Deinococcus radiodurans hypothetical protein DR0351 SWALL:Q9RXG2 (EMBL:AE001895) (227 aa) fasta scores: E(): 3.7e-17%2C 31.67 38d in 221 aa gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=YE0004 YE0005 YE0005 YE0005 3276 4742 - conserved hypothetical protein gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=YE0005 YE0006 YE0006 YE0006 4746 6254 - conserved hypothetical protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=YE0006 YE0007 YE0007 kup kup 6708 8435 + potassium transport protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=YE0007 YE0008 YE0008 YE0008 8606 9025 + ribose permease gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=YE0008 YE0009 YE0009 rbsA rbsA 9033 10535 + putative ribose transport ATP-binding protein Similar to Escherichia coli ribose transport ATP-binding protein RbsA SWALL:RBSA_ECOLI (SWALL:P04983) (501 aa) fasta scores: E(): 2.7e-148%2C 85.83 38d in 494 aa%2Cand to Salmonella typhi high affinity ribose transport protein STY896 SWALL:Q8Z2R4 (EMBL:AL627280) (501 aa) fasta scores: E(): 1.1e-147%2C 85.62 38d in 494 aa gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=YE0009 YE0010 YE0010 rbsC rbsC 10623 11588 + putative sugar transport system%2C permease protein gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=YE0010 YE0011 YE0011 rbsB rbsB 11760 12647 + putative D-ribose-binding periplasmic protein precursor Similar to Escherichia coli D-ribose-binding periplasmic protein precursor RbsB or RbsP or PrlB SWALL:RBSB_ECOLI (SWALL:P02925) (296 aa) fasta scores: E(): 1.7e-84%2C 84.74 38d in 295 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsB or RbsP or STM3884 or STY3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 5.6e-84%2C 84.06 38d in 295 aa gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=YE0011 YE0012 YE0012 rbsK rbsK 12811 13737 + ribokinase gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=YE0012 YE0012A YE0012A rbsR rbsR 13740 14741 + ribose operon repressor Similar to Escherichia coli%2C and Escherichia coli O157:H7 ribose operon repressor RbsR or b3753 or z5254 or ecs4695 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 7.1e-94%2C 73.17 38d in 328 aa and to Salmonella typhimurium transcriptional repressor for rbs operon RbsR or stm3886 SWALL:Q8ZKV7 (EMBL:AE008881) (332 aa) fasta scores: E(): 5.3e-95%2C 74.09 38d in 332 aa gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=YE0012A YE0013 YE0013 YE0013 14738 16162 - putative membrane transport protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=YE0013 YE0014 YE0014 YE0014 16237 16926 - putative GntR-famly transcriptional regulator gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=YE0014 YE0016 YE0016 mobB mobB 23194 23721 - probable molybdopterin-guanine dinucleotide biosynthesis protein B gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=YE0016 YE0017 YE0017 mobA mobA 23718 24317 - molybdopterin-guanine dinucleotide biosynthesis protein A gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=YE0017 YE0018 YE0018 YE0018 24462 24731 + conserved hypothetical protein gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=YE0018 YE0019 YE0019 YE0019 24823 25809 + conserved hypothetical protein gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=YE0019 YE0020 YE0020 dsbA dsbA 25856 26479 + secreted thiol:disulfide interchange protein DsbA gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=YE0020 YE0021 YE0021 polA polA 27070 29868 + DNA polymerase I gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=YE0021 YE0022 YE0022 YE0022 30302 30955 - conserved hypothetical protein gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=YE0022 YE0023 YE0023 YE0023 31718 32284 + conserved hypothetical protein gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=YE0023 YE0024 YE0024 hemN hemN 32467 33840 + oxygen-independent coproporphyrinogen III oxidase gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=YE0024 YE0025 YE0025 ntrC ntrC 33989 35401 - nitrogen regulation protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=YE0025 YE0026 YE0026 ntrB ntrB 35409 36458 - Two component regulatory protein involved in nitrogen assimilation gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=YE0026 YE0027 YE0027 glnA glnA 36607 38016 - glutamine synthetase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=YE0027 YE0028 YE0028 YE0028 38201 38311 - hypothetical protein Poor database matches. Similar to the N-terminal region of Yersinia pestis possible membrane protein YPO0025 SWALL:Q8ZJR4 (EMBL:AJ414141) (52 aa) fasta scores: E(): 1.8e-12%2C 80.55 38d in 36 aa. Doubtful CDS gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=YE0028 YE0029 YE0029 bipA bipA 38529 40352 + putative GTPase gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=YE0029 YE0030 YE0030 YE0030 40648 41235 + conserved hypothetical protein gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=YE0030 YE0031 YE0031 rbn rbn 41328 42218 + ribonuclease BN gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=YE0031 YE0032 YE0032 YE0032 42225 42662 + conserved hypothetical protein gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=YE0032 YE0033 YE0033 YE0033 42914 43837 + conserved membrane protein gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=YE0033 YE0034 YE0034 YE0034 44173 44418 + putative sugar fermentation stimulation protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=YE0034 YE0035 YE0035 YE0035 44431 45117 + LuxR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3e-09%2C 30.43 id in 207 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.2e-10%2C 27.53 38d in 207 aa gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=YE0035 YE0036 YE0036 YE0036 45147 45833 + LuxR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 2.2e-09%2C30.37 38d in 214 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 6.6e-13%2C 30.43 38d in 207 aa gene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=YE0036 YE0037 YE0037 YE0037 45863 46549 + LuxR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.6e-10%2C30.47 38d in 210 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 4.2e-10%2C 27.94 38d in 229 aa gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=YE0037 YE0038 YE0038 YE0038 46579 47265 + LuxR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 1e-09%2C 31.28 id in 211 aa%2C and to the C-terminal region of Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 4.1e-10%2C 27.94 38d in 229 aa gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=YE0038 YE0039 YE0039 YE0039 47294 47980 + LuxR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.8e-08%2C29.04 38d in 210 aa%2C and to Vibrio cholerae LuxR family transcriptional regulator VCA1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.9e-10%2C 28.5 id in 214 aa gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=YE0039 YE0040 YE0040 YE0040 48077 49786 - possible exported protein gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=YE0040 YE0041 YE0041 YE0041 49933 51318 - putative membrane permease gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=YE0041 YE0042 YE0042 gltS gltS 51557 52771 + sodium/glutamate symport carrier protein gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=YE0042 YE0043 YE0043 recG recG 52840 54921 - ATP-dependent DNA helicase gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=YE0043 YE0044 YE0044 trmH trmH 54922 55614 - tRNA (guanosine-2'-O-)-methyltransferase gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=YE0044 YE0045 YE0045 spoT spoT 55620 57722 - guanosine-3'%2C5'-bisbis(diphosphate) 3'-pyrophosphydrolase gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=YE0045 YE0046 YE0046 rpoZ rpoZ 57741 58016 - DNA-directed RNA polymerase%2C omega chain gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=YE0046 YE0047 YE0047 gmk gmk 58071 58694 - guanylate kinase gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=YE0047 YE0048 YE0048 YE0048 58977 60674 + putative DNA ligase gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=YE0048 YE0049 YE0049 YE0049 60692 61309 - putative membrane protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=YE0049 YE0050 YE0050 YE0050 61529 62080 + putative membrane protein Poor database matches. Similar to an internal region of Halobacterium sp. hypothetical protein VNG2239c SWALL:Q9HN60 (EMBL:AE005109) (308 aa) fasta scores: E(): 2.7%2C 29.37 38d in 143 aa. Possible alternative translational start sites gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=YE0050 YE0051 YE0051 nupC nupC 62176 63360 - nucleoside permease Similar to Escherichia coli nucleoside permease NupC or Cru SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 4.2e-106%2C 71.75 38d in 400 aa%2C and to Salmonella typhi nucleoside permease STY2650 SWALL:Q8Z4X4 (EMBL:AL627274) (400 aa) fasta scores: E(): 7.5e-106%2C71.75 38d in 400 aa gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=YE0051 YE0052 YE0052 YE0052 63619 64512 + enoyl-CoA hydratase/isomerase family protein Similar to Escherichia coli probable enoyl-CoA hydratase PaaF SWALL:PAAF_ECOLI (SWALL:P76082) (255 aa) fasta scores: E(): 2.5e-06%2C 27.66 38d in 253 aa%2C and to Xanthomonas campestris RpfF protein%2C mutants of which are unable to produce a diffusible extracellular factor which regulates synthesis of extracellular enzymes and modulates virulence SWALL:O05175 (EMBL:Y09701) (289 aa) fasta scores: E(): 1.2e-27%2C 34.02 38d in 288 aa gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=YE0052 YE0053 YE0053 YE0053 64538 66532 - putative signalling protein Similar to Escherichia coli hypothetical protein YciR SWALL:YCIR_ECOLI (SWALL:P77334) (661 aa) fasta scores: E(): 3.9e-156%2C 60.61 38d in 650 aa%2C and to Salmonella typhi hypothetical protein STY1349 SWALL:Q8Z7D0 (EMBL:AL627270) (660 aa) fasta scores: E(): 1.3e-152%2C60.24 38d in 654 aa gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=YE0053 YE0055 YE0055 YE0055 67055 67885 - metallo-beta-lactamase superfamily protein Similar to Methanosarcina acetivorans metallo-beta-lactamase superfamily protein MA1962 SWALL:AAM05365 (EMBL:AE010879) (280 aa) fasta scores: E(): 3e-44%2C 44.84 38d in 281 aa%2C and to Clostridium acetobutylicum metal-dependent hydrolase of the beta-lactamase superfamily II CAC0535 SWALL:Q97LM2 (EMBL:AE007569) (268 aa) fasta scores: E(): 2.8e-41%2C41.66 38d in 276 aa gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=YE0055 YE0057 YE0057 YE0057 68287 69150 - conserved hypothetical protein gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=YE0057 YE0058 YE0058 rph rph 69277 69993 + ribonuclease PH gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=YE0058 YE0059 YE0059 pyrE pyrE 70145 70786 + orotate phosphoribosyltransferase gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=YE0059 YE0060 YE0060 ttk ttk 70864 71460 - TetR-family regulatory protein gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=YE0060 YE0061 YE0061 dut dut 71581 72036 - deoxyuridine 5'-triphosphate nucleotidohydrolase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=YE0061 YE0062 YE0062 dfp dfp 72017 73204 - DNA/pantothenate metabolism flavoprotein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=YE0062 YE0063 YE0063 radC radC 73442 74110 + putative DNA repair protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=YE0063 YE0064 YE0064 rpmB rpmB 74374 74610 + 50S ribosomal protein L28 gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=YE0064 YE0065 YE0065 rpmG rpmG 74622 74789 + 50S ribosomal protein L33 gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=YE0065 YE0066 YE0066 mutM mutM 74876 75685 + formamidopyrimidine-DNA glycosylase gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=YE0066 YE0067 YE0067 coaD coaD 75792 76271 - phosphopantetheine adenylyltransferase gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=YE0067 YE0068 YE0068 kdtX kdtX 76268 77050 - lipopolysaccharide core biosynthesis glycosyl transferase gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=YE0068 YE0069 YE0069 kdtA kdtA 77051 78328 - 3-deoxy-D-manno-octulosonic-acid transferase gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=YE0069 YE0070 YE0070 rfaC rfaC 78869 79834 - lipopolysaccharide heptosyltransferase-1 gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=YE0070 YE0071 YE0071 rfaF rfaF 79834 80898 - ADP-heptose--LPS heptosyltransferase II gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=YE0071 YE0072 YE0072 rfaD rfaD 80929 81861 - ADP-L-glycero-D-manno-heptose-6-epimerase gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=YE0072 YE0073 YE0073 kbl kbl 82105 83316 + 2-amino-3-ketobutyrate coenzyme A ligase gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=YE0073 YE0074 YE0074 tdh tdh 83341 84366 + threonine 3-dehydrogenase gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=YE0074 YE0075 YE0075 YE0075 84557 85582 - putative exported protein Similar to Escherichia coli hypothetical protein YibQ SWALL:YIBQ_ECOLI (SWALL:P37691) (319 aa) fasta scores: E(): 4e-63%2C 63.4 38d in 317 aa%2C and to Salmonella typhi putative exported protein STY4089 SWALL:Q8Z2F2 (EMBL:AL627280) (320 aa) fasta scores: E(): 1.3e-64%2C62.46 38d in 325 aa gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=YE0075 YE0076 YE0076 YE0076 85606 86760 - putative membrane protein gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=YE0076 YE0077 YE0077 YE0077 86983 88530 - 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=YE0077 YE0078 YE0078 YE0078 88772 89206 + putative membrane protein gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=YE0078 YE0079 YE0079 grxC grxC 89256 89504 + glutaredoxin gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=YE0079 YE0080 YE0080 secB secB 89596 90066 + protein-export protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=YE0080 YE0081 YE0081 gpsA gpsA 90066 91085 + glycerol-3-phosphate dehydrogenase gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=YE0081 YE0082 YE0082 cysE cysE 91211 92032 + serine acetyltransferase gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=YE0082 YE0083 YE0083 YE0083 92213 92716 - putative methyltransferase gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=YE0083 YE0084 YE0084 YE0084 92988 93986 + bifunctional regulatory protein/DNA repair protein gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=YE0084 YE0085 YE0085 cpxA cpxA 94056 95432 - two component sensor kinase gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=YE0085 YE0086 YE0086 cpxR cpxR 95429 96127 - two component system response regulatory protein gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=YE0086 YE0087 YE0087 cpxP cpxP 96348 96812 + putative exported protein gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=YE0087 YE0088 YE0088 YE0088 96944 97846 + putative integral membrane protein gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=YE0088 YE0089 YE0089 pfkA pfkA 98096 99091 + 6-phosphofructokinase gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=YE0089 YE0090 YE0090 YE0090 99139 100473 - transposase for insertion sequence element IS1660 Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=YE0090 YE0091 YE0091 sbp1 sbp1 100712 101701 + exported sulfate-binding protein gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=YE0091 YE0092 YE0092 YE0092 101902 102093 + hypothetical protein Poor database matches. Weakly similar to the N-terminal region of Agrobacterium tumefaciens hypothetical protein AttU SWALL:Q9WWC8 (EMBL:U59485) (78 aa) fasta scores: E(): 9.2%2C 32.55 38d in 43 aa. Doubtful CDS gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=YE0092 YE0093 YE0093 tpiA tpiA 102318 103085 - triosephosphate isomerase gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=YE0093 YE0094 YE0094 YE0094 103214 103798 - putative exported protein gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=YE0094 YE0095 YE0095 YE0095 104103 104537 + conserved membrane protein gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=YE0095 YE0096 YE0096 fpr fpr 104780 105526 - ferredoxin--NADP reductase gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=YE0096 YE0097 YE0097 emrD emrD 105845 107029 + multidrug resistance protein D Similar to Escherichia coli multidrug resistance protein D EmrD SWALL:EMRD_ECOLI (SWALL:P31442) (394 aa) fasta scores: E(): 6.1e-104%2C 71.28 38d in 390 aa%2C and to Salmonella typhi multidrug resistance protein D STY3981 SWALL:Q8Z2L0 (EMBL:AL627280) (394 aa) fasta scores: E(): 2.3e-106%2C 72.33 38d in 394 aa gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=YE0097 YE0098 YE0098 glpX glpX 107115 108125 - putative fructose 1%2C 6-bisphosphatase Similar to Escherichia coli putative fructose 1%2C6-bisphosphatase GlpX SWALL:GLPX_ECOLI (SWALL:P28860) (336 aa) fasta scores: E(): 6.2e-107%2C 86.01 38d in 336 aa%2C and to Shigella flexneri putative fructose 1%2C 6-bisphosphatase GlpX SWALL:GLPX_SHIFL (SWALL:P28900) (336 aa) fasta scores: E(): 2.2e-106%2C 85.71 38d in 336 aa gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=YE0098 YE0099 YE0099 glpK glpK 108307 109830 - glycerol kinase Similar to Escherichia coli glycerol kinase GlpK SWALL:GLPK_ECOLI (SWALL:P08859) (501 aa) fasta scores: E(): 2e-178%2C 85.23 38d in 501 aa%2C and to Salmonella typhi glycerol kinase STY3784 SWALL:Q8Z2Y6 (EMBL:AL627279) (501 aa) fasta scores: E(): 1.6e-177%2C 85.17 38d in 499 aa gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=YE0099 YE0100 YE0100 glpF glpF 109907 110755 - glycerol uptake facilitator protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=YE0100 YE0101 YE0101 YE0101 111350 111589 + conserved hypothetical protein gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=YE0101 YE0102 YE0102 menG menG 111726 112211 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=YE0102 YE0103 YE0103 menA menA 112342 113196 - 1%2C4-dihydroxy-2-naphthoate octaprenyltransferase gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=YE0103 YE0104 YE0104 hslU hslU 113424 114755 - ATP-binding heat shock protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=YE0104 YE0105 YE0105 hslV hslV 114810 115334 - heat shock protein gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=YE0105 YE0106 YE0106 ftsN ftsN 115434 116297 - cell division protein gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=YE0106 YE0107 YE0107 cytR cytR 116363 117391 - transcriptional repressor gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=YE0107 YE0108 YE0108 priA priA 117622 119820 - primosomal protein n' gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=YE0108 YE0109 YE0109 rpmE rpmE 120213 120431 + 50S ribosomal protein L31 gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=YE0109 YE0110 YE0110 metJ metJ 120521 120838 - transcriptional repressor protein gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=YE0110 YE0111 YE0111 metB metB 121214 122371 + cystathionine gamma-synthase gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=YE0111 YE0112 YE0112 metL metL 122379 124814 + bifunctional aspartokinase/homoserine dehydrogenase II gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=YE0112 YE0113 YE0113 YE0113 124892 127000 - hypothetical protein Similar to several including: Clostridium acetobutylicum predicted permease Cac2003 SWALL:Q97HK8 (EMBL:AE007704) (832 aa) fasta scores: E(): 0.072%2C 24.67 id in 535 aa and Buchnera aphidicola OmpA-like protein precursor or bu332 SWALL:OMPA_BUCAI (SWALL:P57414) (349 aa) fasta scores: E(): 6.6%2C 24.17 38d in 273 aa. Note that this CDS lies within a localised low G+C region. gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=YE0113 YE0114 YE0114 metF metF 127374 128258 + 5%2C10-methylenetetrahydrofolate reductase gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=YE0114 YE0115 YE0115 YE0115 128578 129780 + hypothetical protein Similar in parts to Campylobacter jejuni hypothetical protein Cj0849C SWALL:Q9PP74 (EMBL:AL139076) (719 aa) fasta scores: E(): 0.19%2C 22.86 38d in 258 aa and to Chlamydia pneumoniae phosphoenolpyruvate-protein phosphotransferase PtsI or Cpn0038 SWALL:PT1_CHLPN (SWALL:Q9Z9E3) (571 aa) fasta scores: E(): 3.5%2C 19.57 38d in 332 aa gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=YE0115 YE0116 YE0116 ppc ppc 129861 132500 - phosphoenolpyruvate carboxylase gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=YE0116 YE0117 YE0117 argE argE 132848 134032 - acetylornithine deacetylase gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=YE0117 YE0119 YE0119 argC argC 134395 135399 + N-acetyl-gamma-glutamyl-phosphate reductase gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=YE0119 YE0120 YE0120 argB argB 135487 136251 + acetylglutamate kinase gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=YE0120 YE0121 YE0121 argH argH 136489 137862 + putative argininosuccinate lyase gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=YE0121 YE0122 YE0122 YE0122 138428 140911 + putative TonB dependent receptor protein (pseudogene) pseudogene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=YE0122 YE0123 YE0123 YE0123 141014 141649 + hemophore HasA gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=YE0123 YE0124 YE0124 YE0124 141797 142450 + probable hemophore Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 1.5e-05%2C 28.05 38d in 221 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream and downstream%2C YE0123%2C YE0125 and YE0126. gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=YE0124 YE0125 YE0125 YE0125 142509 143150 + probable hemophore Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 1.8e-08%2C 33.48 38d in 218 aa and Serratia marcescens hemophore HasA SWALL:HASA_SERMA (SWALL:Q54450) (188 aa) fasta scores: E(): 0.051%2C 23.38 38d in 201 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream and downstream%2C YE0123%2CYE0124 and YE0126. gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=YE0125 YE0126 YE0126 YE0126 143211 143819 + probable hemophore Similar to Yersinia pestis hemophore HasA or Ypo3922 SWALL:Q8ZA90 (EMBL:AJ414159) (205 aa) fasta scores: E(): 2.1e-13%2C 28.23 38d in 209 aa. Note the product of this CDS is also significantly similar to the CDS directly upstream%2C YE0123%2C YE0124 and YE0125. gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=YE0126 YE0127 YE0127 YE0127 144005 145786 + ABC transporter protein gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=YE0127 YE0128 YE0128 YE0128 145917 147149 + HlyD family secretion protein gene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=YE0128 YE0129 YE0129 YE0129 147226 148026 + putative membrane protein gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=YE0129 YE0130 YE0130 tpn1330 tpn1330 148114 149307 - transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 2.6e-162%2C99.24 38d in 397 aa. Also similar to Escherichia coli%2C and Salmonella typhi IS 10 transposase SWALL:Q53371 (EMBL:S67119) (402 aa) fasta scores: E(): 2e-43%2C 35.27 38d in 394 aa gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=YE0130 YE0131 YE0131 YE0131 149422 150870 - putative pyridine nucleotide-disulphide oxidoreductase gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=YE0131 YE0132 YE0132 YE0132 151070 151801 - putative peroxiredoxin/glutaredoxin family protein gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=YE0132 YE0133 YE0133 oxyR oxyR 151949 152881 + oxidative stress transcriptional regulatory protein gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=YE0133 YE0134 YE0134 sthA sthA 152864 154264 - soluble pyridine nucleotide transhydrogenase gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=YE0134 YE0135 YE0135 YE0135 154470 155114 + TetR-family transcriptional regulatory protein gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=YE0135 YE0136 YE0136 yijD yijD 155245 155607 + putative membrane protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=YE0136 YE0138 YE0138 trmA trmA 155840 156943 - tRNA (uracil-5)-methyltransferase gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=YE0138 YE0139 YE0139 btuB btuB 157369 159267 + exported vitamin B12 receptor protein Similar to Escherichia coli vitamin B12 receptor precursor Btub or Bfe or Cer or DcrC or B3966 SWALL:BTUB_ECOLI (SWALL:P06129) (614 aa) fasta scores: E(): 2.3e-123%2C 52.7 38d in 628 aa%2C and to Yersinia pestis putative vitamin B12 receptor protein Ypo3910 SWALL:Q8ZAA1 (EMBL:AJ414159) (625 aa) fasta scores: E(): 5.4e-144%2C58.45 38d in 633 aa gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=YE0139 YE0140 YE0140 murI murI 159212 160075 + putative glutamate racemase gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=YE0140 YE0141 YE0141 YE0141 166814 167770 + putative periplasmic protein precursor gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=YE0141 YE0142 YE0142 YE0142 167855 169345 + putative sugar transport system ATP-binding protein gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=YE0142 YE0143 YE0143 YE0143 169357 170376 + putative sugar transport system permease gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=YE0143 YE0144 YE0144 YE0144 170376 171344 + putative sugar transport system permease gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=YE0144 YE0145 YE0145 YE0145 171355 172236 - LysR-family transcriptional regulatory protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=YE0145 YE0146 YE0146 YE0146 172356 172694 + conserved hypothetical protein gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=YE0146 YE0147 YE0147 YE0147 172798 174321 - putative magnesium chelatase family protein gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=YE0147 YE0148 YE0148 ilvG ilvG 174892 176538 + acetolactate synthase isozyme II large subunit gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=YE0148 YE0149 YE0149 ilvM ilvM 176535 176792 + acetolactate synthase isozyme II small subunit gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=YE0149 YE0150 YE0150 ilvE ilvE 176815 177741 + branched-chain amino acid aminotransferase gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=YE0150 YE0151 YE0151 ilvD ilvD 177853 179703 + dihydroxy-acid dehydratase gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=YE0151 YE0152 YE0152 ilvA ilvA 179709 181253 + threonine dehydratase gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=YE0152 YE0153 YE0153 YE0153 181439 182935 + putative membrane protein Similar in parts to many including: Plasmodium falciparum putative replication A protein Mal4p2.32 SWALL:Q9U0J0 (EMBL:AL035475) (1145 aa) fasta scores: E(): 0.55%2C 19.25 38d in 483 aa and Mycoplasma pulmonis hypothetical protein Mypu_4790 SWALL:Q98Q87 (EMBL:AL445564) (804 aa) fasta scores: E(): 2%2C 22.8 38d in 307 aa. Note the abundance of Asn residues in the predicted product of this CDS. gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=YE0153 YE0154 YE0154 ilvY ilvY 182937 183818 - LysR-family transcriptional regulatory protein gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=YE0154 YE0155 YE0155 ilvC ilvC 184071 185549 + ketol-acid reductoisomerase gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=YE0155 YE0157 YE0157 YE0157 185847 186524 - putative chaperone protein gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=YE0157 YE0158 YE0158 YE0158 186571 187938 - putative exported protein gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=YE0158 YE0159 YE0159 YE0159 187956 190175 - putative outer membrane usher protein gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=YE0159 YE0160 YE0160 YE0160 190653 191330 - putative fimbrial chaperone gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=YE0160 YE0161 YE0161 YE0161 191517 192047 - putative fimbrial protein gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=YE0161 YE0162 YE0162 ppiC ppiC 192664 192945 - peptidyl-prolyl cis-trans isomerase C gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=YE0162 YE0163 YE0163 rep rep 193159 195183 + ATP-dependent DNA helicase Rep gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=YE0163 YE0164 YE0164 pehX pehX 195239 197065 - exo-poly-alpha-D-galacturonosidase precursor Highly similar to the plant pathogenic Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 3.6e-145%2C 61.23 38d in 601 aa. This CDS was previously sequenced as: Yersinia enterocolitica exopolygalacturonase SWALL:O68975 (EMBL:AF059505) (601 aa) fasta scores: E(): 0%2C 98.83 38d in 600 aa gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=YE0164 YE0165 YE0165 gppA gppA 197407 198903 - guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=YE0165 YE0166 YE0166 rhlB rhlB 198907 199983 - putative DEAD-box helicase gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=YE0166 YE0167 YE0167 trxA trxA 200312 200638 + thioredoxin 1 gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=YE0167 YE0168 YE0168 rho rho 201295 202554 + transcription termination factor gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=YE0168 YE0169 YE0169 rfe rfe 202836 203933 + putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=YE0169 YE0170 YE0170 wzzE wzzE 203969 205030 + putative lipopolysaccharide biosynthesis protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=YE0170 YE0171 YE0171 rffE rffE 205110 206240 + UDP-N-acetylglucosamine 2-epimerase gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=YE0171 YE0172 YE0172 rffD rffD 206237 207499 + putative UDP-glucose/GDP-mannose dehydrogenase gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=YE0172 YE0173 YE0173 rffG rffG 207496 208563 + dTDP-D-glucose-4%2C6-dehydratase gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=YE0173 YE0174 YE0174 rffH rffH 208794 209675 + glucose-1-phosphate thymidylyltransferase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=YE0174 YE0175 YE0175 rffC rffC 209764 210390 + putative lipopolysaccharide biosynthesis protein gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=YE0175 YE0176 YE0176 rffA rffA 210392 211522 + putative lipopolysaccharide biosynthesis protein gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=YE0176 YE0177 YE0177 wzxE wzxE 211524 212780 + putative lipopolysaccharide biosynthesis protein gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=YE0177 YE0178 YE0178 YE0178 212803 213888 + conserved hypothetical protein gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=YE0178 YE0179 YE0179 wecF wecF 213885 215261 + probable 4-alpha-L-fucosyltransferase gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=YE0179 YE0180 YE0180 wecG wecG 215354 216028 + probable UDP-N-acetyl-D-mannosaminuronic acid transferase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=YE0180 YE0181 YE0181 YE0181 216379 217770 + putative permease protein gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=YE0181 YE0184 YE0184 hemY hemY 219361 220560 - putative protoheme IX biogenesis protein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=YE0184 YE0185 YE0185 hemX hemX 220563 221687 - putative uroporphyrin-III C-methyltransferase gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=YE0185 YE0186 YE0186 hemD hemD 221720 222466 - uroporphyrinogen-III synthase gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=YE0186 YE0187 YE0187 hemC hemC 222463 223404 - porphobilinogen deaminase gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=YE0187 YE0189 YE0189 cyaA cyaA 223809 226355 + adenylate cyclase gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=YE0189 YE0190 YE0190 cyaY cyaY 226526 226846 - frataxin-like protein gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=YE0190 YE0191 YE0191 YE0191 226960 227163 + putative lipoprotein gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=YE0191 YE0192 YE0192 dapF dapF 227252 228076 + diaminopimelate epimerase gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=YE0192 YE0193 YE0193 YE0193 228170 228874 + conserved hypothetical protein gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=YE0193 YE0194 YE0194 xerC xerC 228871 229782 + putative integrase/recombinase gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=YE0194 YE0195 YE0195 YE0195 229782 230498 + putative haloacid dehalogenase-like hydrolase gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=YE0195 YE0196 YE0196 uvrD uvrD 230599 232761 + DNA helicase II gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=YE0196 YE0197 YE0197 YE0197 233186 233758 - putative TetR-family regulatory protein gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=YE0197 YE0198 YE0198 YE0198 234065 235297 + conserved hypothetical protein gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=YE0198 YE0199 YE0199 YE0199 235324 236154 + conserved hypothetical protein gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=YE0199 YE0200 YE0200 corA corA 236657 237607 + magnesium and cobalt transport protein gene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=YE0200 YE0201 YE0201 rarD rarD 237795 238685 - putative membrane protein gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=YE0201 YE0202 YE0202 YE0202 238765 239235 - conserved hypothetical protein gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=YE0202 YE0203 YE0203 pldA pldA 239416 240294 + phospholipase A gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=YE0203 YE0204 YE0204 recQ recQ 240371 242221 + ATP-dependent DNA helicase gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=YE0204 YE0205 YE0205 rhtC rhtC 242284 242904 + threonine efflux protein gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=YE0205 YE0206 YE0206 rhtB rhtB 242954 243574 - putative homoserine/homoserine lactone efflux protein gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=YE0206 YE0207 YE0207 pldB pldB 243778 244833 + putative lysophospholipase gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=YE0207 YE0208 YE0208 YE0208 244845 245654 + putative haloacid dehalogenase-like hydrolase gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=YE0208 YE0209 YE0209 glpQ glpQ 245866 246864 - glycerophosphoryl diester phosphodiesterase gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=YE0209 YE0210 YE0210 glpT glpT 247088 248452 - glycerol-3-phosphate transporter Highly similar to Escherichia coli glycerol-3-phosphate transporter glpT or b2240 SWALL:GLPT_ECOLI (SWALL:P08194) (452 aa) fasta scores: E(): 2.3e-165%2C 91.29 38d in 448 aa and to Salmonella typhimurium MFS family%2C Sn-glycerol-3-phosphate transport protein GlpT or stm2283 SWALL:Q8ZNG6 (EMBL:AE008802) (452 aa) fasta scores: E(): 2.8e-167%2C 92.58 38d in 445 aa gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=YE0210 YE0212 YE0212 glpA glpA 248974 250629 + anaerobic glycerol-3-phosphate dehydrogenase subunit A gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=YE0212 YE0213 YE0213 glpB glpB 250619 251893 + putative anaerobic glycerol-3-phosphate dehydrogenase subunit B gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=YE0213 YE0214 YE0214 glpC glpC 251932 253155 + anaerobic glycerol-3-phosphate dehydrogenase subunit C gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=YE0214 YE0215 YE0215 dcrB dcrB 253311 253754 - putative lipoprotein gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=YE0215 YE0216 YE0216 yhhQ yhhQ 253896 254576 - putative membrane protein gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=YE0216 YE0217 YE0217 YE0217 254823 255077 + conserved hypothetical protein gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=YE0217 YE0218 YE0218 YE0218 255099 257429 - putative P-type cation-translocating membrane ATPase gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=YE0218 YE0219 YE0219 yhhN yhhN 257713 258339 - putative membrane protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=YE0219 YE0221 YE0221 YE0221 258627 258947 + conserved hypothetical protein gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=YE0221 YE0222 YE0222 YE0222 258986 259369 + putative membrane protein gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=YE0222 YE0223 YE0223 yhhL yhhL 259410 259682 - putative membrane protein gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=YE0223 YE0224 YE0224 YE0224 259672 260226 - conserved hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=YE0224 YE0225 YE0225 ftsY ftsY 260574 262097 + cell division protein gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=YE0225 YE0226 YE0226 ftsE ftsE 262103 262771 + cell division ATP-binding protein gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=YE0226 YE0227 YE0227 ftsX ftsX 262860 263720 + cell division protein gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=YE0227 YE0228 YE0228 rpoH rpoH 264131 264988 + RNA polymerase sigma-32 factor gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=YE0228 YE0229 YE0229 yhhK yhhK 265084 265476 - putative acetyltransferase gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=YE0229 YE0230 YE0230 livK livK 265898 267013 + branched-chain amino acid-binding protein gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=YE0230 YE0231 YE0231 livH livH 267172 268098 + high-affinity branched-chain amino acid transport system%2C permease protein gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=YE0231 YE0232 YE0232 livM livM 268095 269381 + high-affinity branched-chain amino acid transport system%2C permease protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=YE0232 YE0233 YE0233 livG livG 269378 270145 + high-affinity branched-chain amino acid transport%2C ATP-binding protein gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=YE0233 YE0234 YE0234 livF livF 270190 270891 + high-affinity branched-chain amino acid transport%2C ATP-binding protein gene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=YE0234 YE0235 YE0235 YE0235 270952 272022 - putative exported protein gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=YE0235 YE0236 YE0236 YE0236 272084 272602 - putative exported protein gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=YE0236 YE0237 YE0237 YE0237 272611 273240 - putative exported protein gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=YE0237 YE0238 YE0238 YE0238 273233 273919 - putative exported protein gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=YE0238 YE0239 YE0239 YE0239 273937 276249 - putative exported protein gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=YE0239 YE0240 YE0240 YE0240 276430 276906 - putative exported protein gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=YE0240 YE0241 YE0241 ugpB ugpB 277469 278788 + glycerol-3-phosphate-binding periplasmic protein gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=YE0241 YE0242 YE0242 ugpA ugpA 278898 279785 + sn-glycerol-3-phosphate transport system%2Cpermease protein gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=YE0242 YE0243 YE0243 ugpE ugpE 279782 280627 + sn-glycerol-3-phosphate transport system%2Cpermease protein gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=YE0243 YE0244 YE0244 ugpC ugpC 280634 281722 + sn-glycerol-3-phosphate transport%2C ATP-binding protein gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=YE0244 YE0245 YE0245 ugpQ ugpQ 281719 282459 + glycerophosphoryl diester phosphodiesterase gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=YE0245 YE0246 YE0246 YE0246 282591 283550 + putative membrane protein gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=YE0246 YE0247 YE0247 yigM yigM 283705 284604 + putative membrane protein gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=YE0247 YE0248 YE0248 metR metR 284492 285445 - lysR-family transcriptional regulatory protein gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=YE0248 YE0249 YE0249 metE metE 285551 287827 + 5-methyltetrahydropteroyltriglutamate--homocyst eine methyltransferase gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=YE0249 YE0250 YE0250 YE0250 287893 288603 - putative carboxymethylenebutenolidase gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=YE0250 YE0251 YE0251 udp udp 289388 290149 + uridine phosphorylase gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=YE0251 YE0252 YE0252 YE0252 290482 291279 + conserved hypothetical protein gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=YE0252 YE0253 YE0253 YE0253 291621 293438 + putative carbon starvation protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=YE0253 YE0254 YE0254 YE0254 293567 294097 + putative membrane protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=YE0254 YE0255 YE0255 rumC rumC 294370 295824 + putative DNA recombination protein gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=YE0255 YE0256 YE0256 ubiE ubiE 295958 296713 + ubiquinone/menaquinone biosynthesis methyltransferase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=YE0256 YE0257 YE0257 YE0257 296757 297380 + conserved hypothetical protein gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=YE0257 YE0258 YE0258 aarF aarF 297377 299008 + ubiquinone biosynthesis protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=YE0258 YE0259 YE0259 tatA tatA 299209 299475 + Sec-independent protein translocase protein TatA gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=YE0259 YE0260 YE0260 tatB tatB 299479 300135 + Sec-independent protein translocase protein TatB gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=YE0260 YE0261 YE0261 tatC tatC 300138 300917 + Sec-independent protein translocase protein TatC gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=YE0261 YE0262 YE0262 tatD tatD 300973 301755 + deoxyribonuclease TatD (pseudogene) gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=YE0262 YE0263 YE0263 hemB hemB 301770 302792 + delta-aminolevulinic acid dehydratase gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=YE0263 YE0264 YE0264 rfaH rfaH 302881 303369 - putative regulatory protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=YE0264 YE0265 YE0265 YE0265 303638 305134 + conserved hypothetical protein gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=YE0265 YE0266 YE0266 fadI fadI 305189 305890 + NAD(P)H-flavin reductase gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=YE0266 YE0267 YE0267 fadA fadA 305990 307153 - 3-ketoacyl-CoA thiolase gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=YE0267 YE0268 YE0268 fadB fadB 307165 309354 - fatty acid oxidation complex alpha subunit gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=YE0268 YE0269 YE0269 pepQ pepQ 309626 310975 + proline dipeptidase gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=YE0269 YE0270 YE0270 YE0270 311257 311589 + conserved hypothetical protein (pseudogene) Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YigZ or b3848 SWALL:YIGZ_ECOLI (SWALL:P27862) (204 aa) fasta scores: E(): 3.1e-46%2C 62.25 38d in 204 aa and to Arabidopsis thaliana hypothetical protein SWALL:AAM63017 (EMBL:AY085801) (234 aa) fasta scores: E(): 1.7e-15%2C38.85 38d in 157 aa. Note this CDS contains a stop codon after codon 93. pseudogene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=YE0270 YE0272 YE0272 trkH trkH 311626 313077 + Trk system potassium uptake protein TrkH gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=YE0272 YE0273 YE0273 hemG hemG 313099 313632 + protoporphyrinogen oxidase gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=YE0273 YE0274 YE0274 murB murB 319709 320746 + UDP-N-acetylenolpyruvoylglucosamine reductase gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=YE0274 YE0275 YE0275 birA birA 320743 321702 + bifunctional protein BirA gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=YE0275 YE0276 YE0276 coaA coaA 321742 322692 - pantothenate kinase gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=YE0276 YE0277 YE0277 YE0277 322902 323453 - putative acetyltransferase gene gene284 http://www.ncbi.nlm.nih.gov/gene/?term=YE0277 YE0278 YE0278 tufA tufA 324617 325801 + elongation factor TU Similar to Yersinia pestis elongation factor TU TufA or Ypo0203 SWALL:Q8ZJB2 (EMBL:AJ414141) (394 aa) fasta scores: E(): 1.4e-143%2C 97.2 38d in 393 aa and to Escherichia coli elongation factor TU (TufA or B3339) and (TufB or B3980) SWALL:EFTU_ECOLI (SWALL:P02990) (393 aa) fasta scores: E(): 2.6e-141%2C 94.64 38d in 392 aa gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=YE0278 YE0279 YE0279 secE secE 326041 326424 + preprotein translocase SecE subunit gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=YE0279 YE0280 YE0280 nusG nusG 326426 326971 + transcription antitermination protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=YE0280 YE0281 YE0281 rplK rplK 327165 327593 + 50S ribosomal protein L11 gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=YE0281 YE0282 YE0282 rplA rplA 327597 328301 + 50S ribosomal protein L1 gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=YE0282 YE0283 YE0283 rplJ rplJ 328676 329179 + 50S ribosomal protein L10 gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=YE0283 YE0284 YE0284 rplL rplL 329248 329616 + 50S ribosomal protein L7/L12 gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=YE0284 YE0286 YE0286 rpoB rpoB 329960 333988 + DNA-directed RNA polymerase beta chain gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=YE0286 YE0287 YE0287 rpoC rpoC 334125 338345 + DNA-directed RNA polymerase beta' chain gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=YE0287 YE0288 YE0288 YE0288 338397 339731 - transposase for insertion sequence element IS1660 Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 6.4e-165%2C89.31 38d in 440 aa%2C and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 9.5e-86%2C 52.19 38d in 433 aa gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=YE0288 YE0289 YE0289 thiH thiH 339869 340999 - thiamine biosynthesis protein ThiH gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=YE0289 YE0290 YE0290 thiG thiG 340992 341780 - thiamine biosynthesis protein gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=YE0290 YE0290A YE0290A thiS thiS 341782 341997 - thiamine biosynthesis protein gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=YE0290A YE0291 YE0291 thiF thiF 341994 342776 - thiamine biosynthesis protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=YE0291 YE0292 YE0292 thiE thiE 342760 343371 - thiamine-phosphate pyrophosphorylase gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=YE0292 YE0293 YE0293 thiC thiC 343427 345313 - thiamine biosynthesis protein ThiC gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=YE0293 YE0295 YE0295 rsd rsd 345825 346328 - regulator of sigma D gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=YE0295 YE0296 YE0296 YE0296 346420 347205 + conserved hypothetical protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=YE0296 YE0297 YE0297 hemE hemE 347286 348353 + uroporphyrinogen decarboxylase gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=YE0297 YE0298 YE0298 nfi nfi 348377 349081 + endonuclease V gene gene308 http://www.ncbi.nlm.nih.gov/gene/?term=YE0298 YE0299 YE0299 YE0299 349127 349717 + conserved hypothetical protein gene gene309 http://www.ncbi.nlm.nih.gov/gene/?term=YE0299 YE0300 YE0300 hupA hupA 349906 350181 + DNA-binding protein HU-alpha gene gene310 http://www.ncbi.nlm.nih.gov/gene/?term=YE0300 YE0301 YE0301 yjaH yjaH 350186 350887 + putative exported protein gene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=YE0301 YE0302 YE0302 purD purD 350982 352277 - phosphoribosylamine--glycine ligase gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=YE0302 YE0303 YE0303 purH purH 352303 353892 - bifunctional purine biosynthesis protein PurH [includes: phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=YE0303 YE0304 YE0304 YE0304 360392 360706 + IS1669 hypothetical protein Similar to several including: Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 6.5e-31%2C 87.5 38d in 104 aa%2Cand in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.8e-16%2C 53 38d in 100 aa gene gene318 http://www.ncbi.nlm.nih.gov/gene/?term=YE0304 YE0305 YE0305 YE0305 360724 361521 + putative transposase for insertion element IS1669 Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=YE0305 YE0306 YE0306 YE0306 361779 362948 + putative hydrolase gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=YE0306 YE0307 YE0307 YE0307 362987 364642 - putative transmembrane transport protein gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=YE0307 YE0308 YE0308 YE0308 364639 364950 - putative membrane protein gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=YE0308 YE0309 YE0309 acs acs 365004 366962 - acetyl-coenzyme A synthetase gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=YE0309 YE0310 YE0310 gltP gltP 367882 369195 + proton glutamate symport protein gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=YE0310 YE0311 YE0311 YE0311 369338 369970 - putative two-component response regulator gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=YE0311 YE0312 YE0312 YE0312 370458 371078 + putative AraC-family regulatory protein gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=YE0312 YE0313 YE0313 YE0313 371296 372123 + inner membrane protein (pseudogene) The 5' end of this CDS appears to have been deleted pseudogene gene327 http://www.ncbi.nlm.nih.gov/gene/?term=YE0313 YE0314 YE0314 YE0314 372183 372404 + conserved hypothetical protein gene gene328 http://www.ncbi.nlm.nih.gov/gene/?term=YE0314 YE0315 YE0315 YE0315 372693 373490 - putative membrane protein Similar to many TonB membrane transport proteins: Pseudomonas putida TonB protein SWALL:TONB_PSEPU (SWALL:Q05613) (243 aa) fasta scores: E(): 2.3e-17%2C 36.88 id in 244 aa%2C Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 4.6e-18%2C36.88 38d in 244 aa%2C and to Salmonella typhimurium TonB or Stm1737 SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 0.00013%2C 28.94 38d in 228 aa gene gene329 http://www.ncbi.nlm.nih.gov/gene/?term=YE0315 YE0316 YE0316 YE0316 373868 374410 + putative DNA-binding protein Similar to many proposed RNA polymerase sigma factors including: Escherichia coli probable FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1e-11%2C 31.84 38d in 179 aa%2C Pseudomonas aeruginosa putative Pa1300 SWALL:Q9I444 (EMBL:AE004559) (175 aa) fasta scores: E(): 2.5e-29%2C 51.72 38d in 174 aa and Shigella flexneri 2a FecI SWALL:AAL08458 (EMBL:AF326777) (173 aa) fasta scores: E(): 1e-11%2C 31.84 38d in 179 aa. Also similar to several Iron uptake regulators including:Bordetella pertussis heme uptake regulator HurI SWALL:AAM34715 (EMBL:AF508979) (169 aa) fasta scores: E(): 3.8e-11%2C 32.51 38d in 163 aa gene gene330 http://www.ncbi.nlm.nih.gov/gene/?term=YE0316 YE0317 YE0317 YE0317 374403 375368 + putative two-component system sensor protein Similar to many two-component system sensor proteins including: Escherichia coli protein FecR controlling iron dicitrate transport SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.5e-10%2C 24.24 id in 297 aa%2C and to Pseudomonas aeruginosa probable transmembrane sensor Pa1301 SWALL:Q9I443 (EMBL:AE004559) (327 aa) fasta scores: E(): 3.1e-37%2C 39.74 38d in 312 aa%2Cand to Agrobacterium tumefaciens transmembrane sensor Atu5310 or agr_pat_bx251 SWALL:Q8UK14 (EMBL:AE008953) (311 aa) fasta scores: E(): 5.5e-17%2C 27.5 38d in 309 aa gene gene331 http://www.ncbi.nlm.nih.gov/gene/?term=YE0317 YE0318 YE0318 YE0318 375471 378245 + putative exported iron receptor protein Similar to many including: Pseudomonas putida ferric-pseudobactin 358 receptor precursor PupA SWALL:PUPA_PSEPU (SWALL:P25184) (819 aa) fasta scores: E(): 2.8e-05%2C 22.09 38d in 543 aa%2C Haemophilus influenzae hypothetical protein Hi1369 SWALL:YDDB_HAEIN (SWALL:P45182) (839 aa) fasta scores: E(): 2e-41%2C 28.09 id in 833 aa and Escherichia coli hypothetical protein YddB or b1495 SWALL:YDDB_ECOLI (SWALL:P31827) (790 aa) fasta scores: E(): 3.5e-25%2C 29.04 38d in 785 aa. gene gene332 http://www.ncbi.nlm.nih.gov/gene/?term=YE0318 YE0319 YE0319 YE0319 378373 380079 + putative membrane transport protein ATP-binding component Similar to Haemophilus influenzae high-affinity zinc uptake system ATP-binding protein ZnuC or hi0408 SWALL:ZNUC_HAEIN (SWALL:P44692) (268 aa) fasta scores: E(): 5.3e-08%2C 35.59 38d in 177 aa%2C and to Escherichia coli O157:H7 putative ATP-binding component of a transport system YddA or z2212 or ecs2101 SWALL:Q8XAW0 (EMBL:AE005355) (561 aa) fasta scores: E(): 3.4e-53%2C35.29 38d in 544 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 high-affinity zinc uptake system ATP-binding protein znuc znuc or b1858 or z2910 or ecs2568 SWALL:ZNUC_ECOLI (SWALL:P52648) (251 aa) fasta scores: E(): 1.8e-06%2C 34.48 38d in 174 aa gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=YE0319 YE0320 YE0320 YE0320 380064 382850 + probable exported Zinc protease Similar to many proposed Zinc proteases including: Escherichia coli probable zinc protease PqqL or b1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 6.4e-50%2C 26.11 38d in 938 aa and Haemophilus influenzae probable zinc protease PqqL or hi1368 SWALL:PQQL_HAEIN (SWALL:P45181) (926 aa) fasta scores: E(): 3.6e-52%2C 24.01 38d in 937 aa gene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=YE0320 YE0321 YE0321 YE0321 382982 383233 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YefM or b2017 SWALL:YEFM_ECOLI (SWALL:P46147) (83 aa) fasta scores: E(): 2.8e-23%2C 76.54 38d in 81 aa and to Rhodococcus erythropolis hypothetical protein SWALL:AAK11726 (EMBL:AY026386) (85 aa) fasta scores: E(): 1.5e-11%2C 44.44 38d in 81 aa gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=YE0321 YE0322 YE0322 YE0322 383508 386036 - putative inner-membrane transport protein Similar to several proposed proteins of unknown function and efflux proteins including: Escherichia coli potassium efflux system KefA or b0465 SWALL:KEFA_ECOLI (SWALL:P77338) (1120 aa) fasta scores: E(): 3.1e-19%2C24.28 38d in 803 aa and to Pseudomonas aeruginosa hypothetical protein Pa1408 pa1408 SWALL:Q9I3T6 (EMBL:AE004570) (807 aa) fasta scores: E(): 4.7e-100%2C41.48 38d in 793 aa gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=YE0322 YE0323 YE0323 foxA foxA 386263 388395 + ferrioxamine receptor precursor Previously sequenced as Yersinia enterocolitica ferrioxamine receptor precursor FoxA SWALL:FOXA_YEREN (SWALL:Q01674) (710 aa) fasta scores: E(): 0%2C 99.29 38d in 710 aa. Also highly similar to Salmonella typhimurium ferrioxamine B receptor precursor FoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 4.3e-96%2C 41.33 38d in 704 aa and to Erwinia chrysanthemi ferrichrysobactin receptor precursor Fct SWALL:FCT_ERWCH (SWALL:Q47162) (735 aa) fasta scores: E(): 5.3e-70%2C 37.08 38d in 728 aa gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=YE0323 YE0324 YE0324 YE0324 388865 390373 + putative ATP/GTP-binding protein Similar to many including: Pseudomonas aeruginosa probable transcriptional regulator Pa2032 SWALL:Q9I283 (EMBL:AE004629) (474 aa) fasta scores: E(): 1.2e-119%2C64.25 38d in 470 aa%2C Escherichia coli O157:H7 putative regulator YjiR or z5941 or ecs5302 SWALL:Q8XB83 (EMBL:AE005665) (470 aa) fasta scores: E(): 2.9e-104%2C56.47 38d in 471 aa%2C and Escherichia coli hypothetical protein YdcR or b1439 SWALL:YDCR_ECOLI (SWALL:P77730) (468 aa) fasta scores: E(): 2.9e-47%2C 33.68 38d in 472 aa gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=YE0324 YE0327 YE0327 hemV hemV 390519 391319 - hemin transport system ATP-binding protein gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=YE0327 YE0328 YE0328 hemU hemU 391312 392316 - hemin transport system permease protein HmuU gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=YE0328 YE0329 YE0329 hemT hemT 392313 393152 - hemin-binding periplasmic protein gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=YE0329 YE0330 YE0330 hemS hemS 393149 394186 - hemin transport protein gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=YE0330 YE0331 YE0331 hemR hemR 394303 396366 - hemin receptor precursor gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=YE0331 YE0332 YE0332 hemP hemP 396539 396784 - hemin uptake protein Previously sequenced as: Yersinia enterocolitica hemin uptake protein HemP SWALL:HEMP_YEREN (SWALL:P31516) (81 aa) fasta scores: E(): 1.3e-31%2C 100 38d in 81 aa. Also similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein YdiE or stm1346 or sty1764 SWALL:Q8XGW6 (EMBL:AE008758) (63 aa) fasta scores: E(): 0.019%2C 41.27 38d in 63 aa gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=YE0332 YE0333 YE0333 YE0333 396816 397466 - conserved hypothetical protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=YE0333 YE0334 YE0334 YE0334 397463 398008 - conserved hypothetical protein gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=YE0334 YE0335 YE0335 hemN hemN 398005 399318 - putative coproporphyrinogen III oxidase gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=YE0335 YE0336 YE0336 tdcB tdcB 399955 400947 + threonine dehydratase catabolic Similar to Escherichia coli%2C and Escherichia coli O157:H7 threonine dehydratase catabolic TdcB or b3117 or z4469 or ecs3997 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 1.1e-96%2C 78.83 38d in 326 aa%2C and to Salmonella typhimurium threonine dehydratase catabolic TdcB or stm3244 SWALL:THD2_SALTY (SWALL:P11954) (329 aa) fasta scores: E(): 1.5e-96%2C 79.14 38d in 326 aa gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=YE0336 YE0337 YE0337 tdcC tdcC 400972 402300 + threonine/serine transporter Highly similar to many threonine/serine transporters including: Escherichia coli%2C and Escherichia coli O157:H7 threonine/serine transporter TdcC or b3116 or z4468 or ecs3996 SWALL:TDCC_ECOLI (SWALL:P11867) (443 aa) fasta scores: E(): 1.4e-148%2C 85.64 38d in 439 aa and Salmonella typhimurium haaap family%2C L-threonine/ l-serine permease%2C anaerobically inducible TdcC or stm3243 SWALL:Q8ZLW1 (EMBL:AE008849) (443 aa) fasta scores: E(): 3.4e-148%2C 85.64 38d in 439 aa gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=YE0337 YE0338 YE0338 tdcD tdcD 402319 403575 + propionate kinase Similar to many kinases including: Escherichia coli propionate kinase TdcD or b3115 SWALL:TDCD_ECOLI (SWALL:P11868) (402 aa) fasta scores: E(): 6.3e-102%2C66.83 38d in 389 aa%2C Salmonella typhimurium propionate kinase TdcD or oxd-2 or stm3242 SWALL:TDCD_SALTY (SWALL:O06961) (402 aa) fasta scores: E(): 1.1e-101%2C66.83 38d in 389 aa and Neisseria meningitidis acetate kinase AckA1 or nma1718 SWALL:Q9JTM0 (EMBL:AL162756) (408 aa) fasta scores: E(): 2.3e-69%2C 47.16 38d in 405 aa gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=YE0338 YE0339 YE0339 tdcE tdcE 403626 405920 + keto-acid formate acetyltransferase Highly similar to many including: Escherichia coli keto-acid formate acetyltransferase TdcE or b3114 SWALL:TDCE_ECOLI (SWALL:P42632) (746 aa) fasta scores: E(): 0%2C 85.83 38d in 741 aa and to Yersinia pestis formate acetyltransferase 1 PflB or ypo1383 SWALL:Q8ZGC0 (EMBL:AJ414148) (760 aa) fasta scores: E(): 0%2C 75.92 38d in 756 aa gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=YE0339 YE0341 YE0341 YE0341 406648 407421 - putative dehydrogenase/reductase Similar to many putative oxidoreductases: Rhizobium loti glucose dehydrogenase Mlr5280 SWALL:Q98C63 (EMBL:AP003006) (250 aa) fasta scores: E(): 1.2e-39%2C44.98 38d in 249 aa and Streptomyces coelicolor putative dehydrogenase/reductase Sco2651 or sc8e4a.21C SWALL:Q9L1Y4 (EMBL:AL138662) (245 aa) fasta scores: E(): 3.2e-29%2C38.55 38d in 249 aa gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=YE0341 YE0342 YE0342 YE0342 407491 408471 - putative aldo/keto reductase Similar to Yersinia pestis putative aldo/keto reductase Ypo2806 SWALL:Q8ZCZ6 (EMBL:AJ414153) (329 aa) fasta scores: E(): 1.1e-80%2C 67.47 38d in 329 aa%2C and to Xanthomonas campestris pv. campestris str. ATCC 33913 oxidoreductase Xcc2679 SWALL:AAM41951 (EMBL:AE012380) (327 aa) fasta scores: E(): 1.7e-76%2C 62.69 38d in 327 aa gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=YE0342 YE0343 YE0343 YE0343 408604 409497 + putative lysr-family transcriptional regulatory protein Similar to many proposed LysR-family transcriptional regulators including: Yersinia pestis putative LysR-family transcriptional regulatory protein PtxR or Ypo2807 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 1.2e-63%2C 54.23 38d in 295 aa%2C and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 5.8e-71%2C 59.18 38d in 294 aa%2Cand to Xanthomonas axonopodis pv. citri str. 306 transcriptional regulator lysr family xac0302 SWALL:AAM35194 (EMBL:AE011655) (317 aa) fasta scores: E(): 4.1e-66%2C 56.27 38d in 295 aa gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=YE0343 YE0344 YE0344 YE0344 410078 411052 + putative HlyD-family secretion protein (fragment) Similar in part to Escherichia coli microcin h47 secretion protein MchE SWALL:MCHE_ECOLI (SWALL:Q9EXN6) (424 aa) fasta scores: E(): 1.4e-80%2C 70.46 38d in 325 aa and to Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 4e-05%2C 25.24 38d in 313 aa. This CDS appears to lack both 5' and 3' regions and is thought to be a gene remnant. pseudogene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=YE0344 YE0345 YE0345 YE0345 411054 411212 + integrase (fragment) Similar to in parts to Yersinia pestis integrase Ypo0961 SWALL:Q8ZHD9 (EMBL:AJ414145) (102 aa) fasta scores: E(): 2.7e-16%2C 94.34 38d in 53 aa and Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 0.0049%2C 44.18 38d in 43 aa pseudogene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=YE0345 YE0346 YE0346 YE0346 411687 412262 - putative TetR-family regulatory protein gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=YE0346 YE0347 YE0347 glxK glxK 412574 413737 + putative glycerate kinase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=YE0347 YE0348 YE0348 dsbD dsbD 413785 415521 - thiol:disulfide interchange protein gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=YE0348 YE0349 YE0349 YE0349 415497 415799 - putative cation tolerance protein gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=YE0349 YE0350 YE0350 dcuA dcuA 416005 417306 - anaerobic C4-dicarboxylate transporter gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=YE0350 YE0351 YE0351 aspA aspA 417426 418862 - aspartate ammonia-lyase gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=YE0351 YE0352 YE0352 YE0352 419304 419831 + putative membrane protein gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=YE0352 YE0353 YE0353 groES groES 420084 420377 + 10 kDa chaperonin gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=YE0353 YE0354 YE0354 groEL groEL 420434 422086 + 60 kDa chaperonin gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=YE0354 YE0355 YE0355 YE0355 422468 422806 + putative lipoprotein gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=YE0355 YE0356 YE0356 YE0356 422874 423911 - conserved hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=YE0356 YE0357 YE0357 efP efP 423947 424513 + elongation factor P gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=YE0357 YE0358 YE0358 ecnB ecnB 424699 424830 + entericidin B precursor Similar to Citrobacter freundii entericidin B precursor EcnB SWALL:ECNB_CITFR (SWALL:P56550) (48 aa) fasta scores: E(): 1.2e-07%2C 64.1 38d in 39 aa and to Escherichia coli%2C and Escherichia coli O157:H7 entericidin B precursor EcnB or b4147.2 or z5754 or ecs5128.2 SWALL:ECNB_ECOLI (SWALL:P56549) (48 aa) fasta scores: E(): 3.3e-07%2C 55.81 38d in 43 aa gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=YE0358 YE0359 YE0359 sugE sugE 425009 425323 + putative chaperone gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=YE0359 YE0360 YE0360 YE0360 425325 425864 - lipoprotein Similar to many lipoproteins including: Escherichia coli%2C and Escherichia coli O157:H7 outer membrane lipoprotein Blc precursor or b4149 or z5756 or ecs5130 SWALL:BLC_ECOLI (SWALL:P39281) (177 aa) fasta scores: E(): 6.4e-44%2C 61.49 38d in 174 aa and to Salmonella typhi putative lipoprotein Blc or sty4699 SWALL:Q8Z199 (EMBL:AL627283) (177 aa) fasta scores: E(): 5.8e-46%2C63.79 38d in 174 aa gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=YE0360 YE0361 YE0361 frdD frdD 426013 426369 - fumarate reductase hydrophobic protein gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=YE0361 YE0362 YE0362 frdC frdC 426386 426778 - fumarate reductase hydrophobic protein gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=YE0362 YE0363 YE0363 frdB frdB 426795 427529 - fumarate reductase iron-sulfur protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=YE0363 YE0364 YE0364 frdA frdA 427522 429345 - fumarate reductase flavoprotein subunit gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=YE0364 YE0365 YE0365 poxA poxA 429789 430766 + putative lysyl-tRNA synthetase gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=YE0365 YE0366 YE0366 YE0366 430861 434091 - putative membrane transport protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=YE0366 YE0367 YE0367 psd psd 434261 435142 - phosphatidylserine decarboxylase proenzyme gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=YE0367 YE0368 YE0368 YE0368 435251 436303 - conserved hypothetical protein gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=YE0368 YE0369 YE0369 orn orn 436481 437026 + oligoribonuclease gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=YE0369 YE0371 YE0371 YE0371 438071 439225 - putative iron-sulfur cluster-binding protein gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=YE0371 YE0372 YE0372 YE0372 439224 440738 + conserved hypothetical protein gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=YE0372 YE0373 YE0373 YE0373 440749 441219 + conserved hypothetical protein gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=YE0373 YE0374 YE0374 YE0374 441320 443182 + putative N-acetylmuramoyl-L-alanine amidase-family protein gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=YE0374 YE0375 YE0375 mutL mutL 443198 445105 + DNA mismatch repair protein gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=YE0375 YE0376 YE0376 miaA miaA 445098 446039 + tRNA delta(2)-isopentenylpyrophosphate transferase gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=YE0376 YE0377 YE0377 ymr ymr 446155 446460 + yersinia multiple regulator gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=YE0377 YE0378 YE0378 hflX hflX 446559 447860 + GTP-binding protein gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=YE0378 YE0379 YE0379 hflK hflK 448234 449241 + putative membrane protein gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=YE0379 YE0380 YE0380 hflC hflC 449245 450249 + putative membrane protein gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=YE0380 YE0381 YE0381 YE0381 450388 450588 + putative membrane protein gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=YE0381 YE0382 YE0382 purA purA 450688 451986 + adenylosuccinate synthetase gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=YE0382 YE0383 YE0383 YE0383 452266 452691 + conserved hypothetical protein gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=YE0383 YE0384 YE0384 rnr rnr 452871 455417 + ribonuclease R gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=YE0384 YE0385 YE0385 YE0385 455489 456229 + putative methylase gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=YE0385 YE0386 YE0386 aidB aidB 456561 458204 + putative acyl-CoA dehydrogenase gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=YE0386 YE0387 YE0387 YE0387 458229 458537 - putative lipoprotein gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=YE0387 YE0388 YE0388 YE0388 458723 459472 + conserved hypothetical protein gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=YE0388 YE0389 YE0389 YE0389 459557 459844 - putative exported protein Similar to many exported proteins including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YjfY precursor b4199 or z5808 or ecs5175 SWALL:YJFY_ECOLI (SWALL:P39307) (91 aa) fasta scores: E(): 1.4e-06%2C 40 38d in 80 aa and to Salmonella typhimurium putative outer membrane protein YhcN or Stm3361 SWALL:Q8ZLP6 (EMBL:AE008855) (87 aa) fasta scores: E(): 2.8e-05%2C 43.95 38d in 91 aa gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=YE0389 YE0392 YE0392 rpsF rpsF 460435 460827 + 30S ribosomal protein S6 gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=YE0392 YE0393 YE0393 priB priB 460832 461152 + primosomal replication protein n gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=YE0393 YE0394 YE0394 rpsR rpsR 461157 461384 + 30S ribosomal protein S18 gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=YE0394 YE0395 YE0395 rplI rplI 461424 461876 + 50S ribosomal protein L9 gene gene407 http://www.ncbi.nlm.nih.gov/gene/?term=YE0395 YE0396 YE0396 YE0396 461952 462401 - putative exported protein gene gene408 http://www.ncbi.nlm.nih.gov/gene/?term=YE0396 YE0397 YE0397 YE0397 462544 463317 - putative membrane protein Similar to Yersinia pestis hypothetical protein Ypo3533 SWALL:Q8ZB86 (EMBL:AJ414157) (246 aa) fasta scores: E(): 2.3e-46%2C 71.76 38d in 255 aa and Escherichia coli hypothetical protein YtfB or b4206 SWALL:YTFB_ECOLI (SWALL:P39310) (212 aa) fasta scores: E(): 7.9e-15%2C 47.39 id in 211 aa gene gene409 http://www.ncbi.nlm.nih.gov/gene/?term=YE0397 YE0398 YE0398 fklB fklB 463604 464224 + FKBP-type peptidyl-prolyl cis-trans isomerase gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=YE0398 YE0399 YE0399 cpdB cpdB 464296 466269 - 2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase precursor gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=YE0399 YE0400 YE0400 cysQ cysQ 466745 467488 + inositol monophosphatase family protein gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=YE0400 YE0401 YE0401 YE0401 467491 468054 - putative exported protein gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=YE0401 YE0402 YE0402 YE0402 468378 468581 + conserved hypothetical protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=YE0402 YE0403 YE0403 YE0403 468666 469997 - putative membrane protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=YE0403 YE0404 YE0404 msrA msrA 470285 470923 - peptide methionine sulfoxide reductase gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=YE0404 YE0405 YE0405 YE0405 471364 473064 + putative exported protein gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=YE0405 YE0406 YE0406 YE0406 473166 476945 + putative exported protein gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=YE0406 YE0407 YE0407 YE0407 476948 477310 + conserved hypothetical protein gene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=YE0407 YE0408 YE0408 ppa ppa 477569 478096 - inorganic pyrophosphatase gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=YE0408 YE0409 YE0409 YE0409 478386 479966 + methyl-accepting chemotaxis protein Similar to many including: Escherichia coli methyl-accepting chemotaxis protein I Tsr or ched or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2e-58%2C 42.61 38d in 528 aa and to Salmonella typhimurium methyl-accepting chemotaxis protein I%2C serine sensor receptor Tsr or stm4533 SWALL:Q8ZJY4 (EMBL:AE008913) (553 aa) fasta scores: E(): 1.1e-59%2C42.39 38d in 526 aa gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=YE0409 YE0410 YE0410 fbp fbp 480178 481191 - fructose-1%2C6-bisphosphatase gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=YE0410 YE0411 YE0411 mpl mpl 481361 482746 + UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m eso-diaminopimelate ligase gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=YE0411 YE0412 YE0412 YE0412 483000 483263 - putative exported protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=YE0412 YE0413 YE0413 argR argR 483677 484147 - arginine repressor gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=YE0413 YE0414 YE0414 mdh mdh 484611 485546 + malate dehydrogenase gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=YE0414 YE0415 YE0415 YE0415 485623 485898 - putative sugar fermentation stimulation protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=YE0415 YE0416 YE0416 YE0416 486061 486429 + conserved hypothetical protein (pseudogene) CDS contains a premature stop codon following codon 10 pseudogene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=YE0416 YE0417 YE0417 ispB ispB 486490 487461 - octaprenyl-diphosphate synthase gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=YE0417 YE0418 YE0418 rplU rplU 487721 488032 + 50S ribosomal protein L21 gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=YE0418 YE0419 YE0419 rpmA rpmA 488052 488309 + 50S ribosomal protein L27 gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=YE0419 YE0420 YE0420 YE0420 488397 489356 + putative membrane protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=YE0420 YE0421 YE0421 YE0421 489388 490560 + putative GTP-binding protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=YE0421 YE0422 YE0422 basS basS 490664 491725 - two-component system sensor protein gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=YE0422 YE0423 YE0423 basR basR 491725 492384 - two-component system response regulator gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=YE0423 YE0424 YE0424 dacB dacB 492390 493838 - penicillin-binding protein 4 precursor gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=YE0424 YE0425 YE0425 greA greA 494097 494573 + transcription elongation factor gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=YE0425 YE0426 YE0426 YE0426 494702 494995 - conserved hypothetical protein gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=YE0426 YE0427 YE0427 ftsJ ftsJ 495142 495771 + ribosomal RNA large subunit methyltransferase J gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=YE0427 YE0428 YE0428 ftsH ftsH 495828 497762 + cell division protein gene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=YE0428 YE0429 YE0429 folP folP 497847 498680 + dihydropteroate synthase gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=YE0429 YE0430 YE0430 mrsA mrsA 498690 500030 + probable phosphoglucomutase/phosphomannomutase gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=YE0430 YE0431 YE0431 secG secG 500254 500589 + protein-export membrane protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=YE0431 YE0432 YE0432 YE0432 501114 501572 + conserved hypothetical protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=YE0432 YE0433 YE0433 nusA nusA 501594 503081 + N utilization substance protein A gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=YE0433 YE0434 YE0434 infB infB 503106 505784 + translation initiation factor IF2-2 gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=YE0434 YE0435 YE0435 rbfA rbfA 505851 506261 + ribosome-binding factor A gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=YE0435 YE0436 YE0436 truB truB 506261 507250 + tRNA pseudouridine synthase B gene gene450 http://www.ncbi.nlm.nih.gov/gene/?term=YE0436 YE0437 YE0437 rpsO rpsO 507372 507641 + 30S ribosomal protein S15 gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=YE0437 YE0438 YE0438 pnp pnp 507904 510024 + polyribonucleotide nucleotidyltransferase gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=YE0438 YE0439 YE0439 nlpI nlpI 510147 511031 + lipoprotein NlpI gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=YE0439 YE0440 YE0440 deaD deaD 511217 513190 + cold-shock dead-box protein A gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=YE0440 YE0441 YE0441 YE0441 513550 513822 + putative lipoprotein no significant database hits gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=YE0441 YE0442 YE0442 YE0442 514238 515260 - conserved hypothetical protein gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=YE0442 YE0443 YE0443 YE0443 515727 516887 + multidrug efflux protein gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=YE0443 YE0444 YE0444 YE0444 516891 520016 + multidrug efflux protein gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=YE0444 YE0445 YE0445 ibeB ibeB 520018 521424 + probable outer membrane efflux lipoprotein gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=YE0445 YE0447 YE0447 YE0447 522019 523344 + putative transmembrane transport protein gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=YE0447 YE0448 YE0448 YE0448 523394 524710 + conserved hypothetical protein Similar to many proteins of undefined function including: Salmonella typhi hypothetical protein Sty3418 SWALL:Q8Z3K8 (EMBL:AL627278) (436 aa) fasta scores: E(): 1.7e-102%2C 64.98 38d in 437 aa%2C Escherichia coli hypothetical protein YhaM or b3108/b3109 SWALL:YHAM_ECOLI (SWALL:P42626) (437 aa) fasta scores: E(): 1.6e-101%2C65.36 38d in 436 aa and Streptococcus pneumoniae L-serine dehydratase%2C iron-sulfur-dependent%2C alpha subunit sp0105 SWALL:Q97T50 (EMBL:AE007327) (290 aa) fasta scores: E(): 1.1%2C 26.87 38d in 227 aa gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=YE0448 YE0449 YE0449 YE0449 524772 525650 - conserved hypothetical protein gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=YE0449 YE0450 YE0450 YE0450 525662 526657 - putative protease gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=YE0450 YE0451 YE0451 YE0451 526864 527385 + putative lipid carrier protein gene gene464 http://www.ncbi.nlm.nih.gov/gene/?term=YE0451 YE0452 YE0452 YE0452 527379 527882 + putative acetyltransferase gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=YE0452 YE0453 YE0453 YE0453 527869 528162 - conserved hypothetical protein gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=YE0453 YE0454 YE0454 YE0454 528299 529615 - putative amino acid permease gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=YE0454 YE0455 YE0455 speF speF 529709 531874 - ornithine decarboxylase%2C inducible Similar to Escherichia coli ornithine decarboxylase%2C inducible SpeF or b0693 SWALL:DCOS_ECOLI (SWALL:P24169) (732 aa) fasta scores: E(): 0%2C 71.42 38d in 721 aa and to Yersinia pestis ornithine decarboxylase SpeC or Ypo0960 SWALL:Q8ZHE0 (EMBL:AJ414145) (720 aa) fasta scores: E(): 0%2C 76.32 38d in 718 aa gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=YE0455 YE0458 YE0458 YE0458 533021 535045 - conserved hypothetical protein gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=YE0458 YE0459 YE0459 YE0459 535068 536306 - putative exported protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=YE0459 YE0460 YE0460 YE0460 536867 538180 + putative sugar binding protein gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=YE0460 YE0461 YE0461 YE0461 538188 539072 + sugar transport system%2C permease protein gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=YE0461 YE0462 YE0462 YE0462 539091 539930 + sugar transport system%2C permease protein gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=YE0462 YE0463 YE0463 YE0463 539942 541057 + putative sugar ABC transporter%2C ATP-binding protein gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=YE0463 YE0464 YE0464 YE0464 541072 542238 + conserved hypothetical protein gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=YE0464 YE0465 YE0465 YE0465 542336 542779 + conserved hypothetical protein gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=YE0465 YE0467 YE0467 YE0467 543286 544275 + hypothetical protein Weakly similar to Lactococcus lactis GntR family transcriptional regulator BusR or ll1453 SWALL:Q9CFL6 (EMBL:AE006375) (206 aa) fasta scores: E(): 8.5%2C 25 38d in 184 aa gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=YE0467 YE0468 YE0468 YE0468 544967 545596 + conserved hypothetical protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=YE0468 YE0469 YE0469 phnP phnP 545597 546364 - PhnP protein gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=YE0469 YE0470 YE0470 phnN phnN 546355 546933 - PhnN protein gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=YE0470 YE0471 YE0471 phnM phnM 546933 548081 - PhnM protein gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=YE0471 YE0472 YE0472 phnL phnL 548078 548752 - phosphonates transport ATP-binding protein gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=YE0472 YE0473 YE0473 phnK phnK 548826 549614 - phosphonates transport ATP-binding protein gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=YE0473 YE0474 YE0474 phnJ phnJ 549629 550495 - PhnJ protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=YE0474 YE0475 YE0475 phnI phnI 550488 551600 - PhnI protein gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=YE0475 YE0476 YE0476 phnH phnH 551600 552181 - PhnH protein Similar to Escherichia coli PhnH protein involved in phosphonate usage%2C b4100 SWALL:PHNH_ECOLI (SWALL:P16686) (194 aa) fasta scores: E(): 1.4e-38%2C 54.12 id in 194 aa%2C and to Yersinia pestis PhnH protein or ypo3458 SWALL:Q8ZBF8 (EMBL:AJ414157) (208 aa) fasta scores: E(): 1.3e-40%2C 63.46 38d in 208 aa gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=YE0476 YE0477 YE0477 phnG phnG 552181 552657 - PhnG protein gene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=YE0477 YE0478 YE0478 phnF phnF 552658 553383 - probable gntR-family transcriptional regulatory protein gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=YE0478 YE0479 YE0479 YE0479 553768 554871 + putative lipoprotein Similar to many proteins which are rich in Glycine: Ralstonia solanacearum putative hemagglutinin-related transmembrane protein Rsp1094 SWALL:Q8XQX4 (EMBL:AL646082) (459 aa) fasta scores: E(): 1.3e-22%2C 35.71 38d in 392 aa and to Ralstonia solanacearum putative lipoprotein Rsp0116 or rs03006 SWALL:Q8XTJ2 (EMBL:AL646076) (427 aa) fasta scores: E(): 2e-21%2C 38.43 38d in 346 aa and to Arabidopsis thaliana putative glycine-rich protein f7k2.60 or at4g22480 SWALL:Q9SUX1 (EMBL:AL033545) (608 aa) fasta scores: E(): 4.8e-07%2C 31.56 38d in 377 aa. Note the high Glycine content of the predicted product of this CDS gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=YE0479 YE0480 YE0480 YE0480 555105 556841 + exported protein Similar to Haemophilus influenzae heme/hemopexin utilization protein B precursor HxuB or hi0263 SWALL:HXB1_HAEIN (SWALL:P44601) (565 aa) fasta scores: E(): 9.8e-06%2C 17.76 38d in 563 aa and to Ralstonia solanacearum probable activation/secretion signal peptide protein Rsp1095 or rs02601 SWALL:Q8XQX3 (EMBL:AL646082) (557 aa) fasta scores: E(): 5.6e-24%2C 31.85 38d in 565 aa gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=YE0480 YE0481 YE0481 nrdG nrdG 556986 557360 - anaerobic ribonucleoside-triphosphate reductase activating protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=YE0481 YE0482 YE0482 nrdD nrdD 557696 559834 - anaerobic ribonucleoside-triphosphate reductase gene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=YE0482 YE0483 YE0483 YE0483 560118 561026 - putative LysR-family transcriptional regulatory protein Similar to many proposed transcriptional regulatory proteins including: Pseudomonas aeruginosa probable transcriptional regulator Pa0181 SWALL:Q9I6V1 (EMBL:AE004456) (310 aa) fasta scores: E(): 6.8e-32%2C37.28 38d in 287 aa and Rhizobium meliloti putative LysR-family transcriptional regulator Ra0890 or Sma1632 SWALL:Q92YJ0 (EMBL:AE007275) (317 aa) fasta scores: E(): 6.8e-28%2C 32.3 38d in 291 aa gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=YE0483 YE0484 YE0484 YE0484 561129 561653 + putative oxidoreductase Similar to Bacillus subtilis general stress protein 14 YwrO SWALL:GS14_BACSU (SWALL:P80871) (175 aa) fasta scores: E(): 2.3e-26%2C 46.83 38d in 158 aa%2C Bacillus subtilis putative NAD(P)H oxidoreductase YrkL SWALL:YRKL_BACSU (SWALL:P54439) (174 aa) fasta scores: E(): 5e-23%2C 39.41 38d in 170 aa%2C and to Escherichia coli%2Cand Escherichia coli O157:H7 putative NAD(P)H oxidoreductase YheR or b3351 or z4712 or ecs4202 SWALL:YHER_ECOLI (SWALL:P45534) (184 aa) fasta scores: E(): 1.3e-21%2C 42.33 38d in 163 aa gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=YE0484 YE0485 YE0485 YE0485 561756 562025 + conserved hypothetical protein Similar to Erwinia amylovora hypothetical 10.0 kDa protein SWALL:Q9ETK7 (EMBL:AF264950) (89 aa) fasta scores: E(): 1.3e-17%2C 60.67 38d in 89 aa gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=YE0485 YE0486 YE0486 YE0486 562119 562376 + conserved hypothetical protein Similar in parts to Erwinia amylovora hypothetical protein SWALL:Q9ETQ1 (EMBL:AF264950) (71 aa) fasta scores: E(): 2.6e-14%2C 56.33 38d in 71 aa and to Yersinia pestis hypothetical protein Y1074 or ypmt1.69 SWALL:Q9ZGZ3 (EMBL:AF074611) (108 aa) fasta scores: E(): 8.8%2C 33.33 38d in 42 aa gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=YE0486 YE0487 YE0487 YE0487 562432 563148 - putative ABC transporter%2C ATP-binding protein Similar to Yersinia pestis putative ABC transporter%2C ATP-binding protein Ypo3453 SWALL:Q8ZBG3 (EMBL:AJ414157) (233 aa) fasta scores: E(): 3.4e-69%2C 89.7 id in 233 aa and Agrobacterium tumefaciens ABC transporter%2C nucleotide binding/ATPase protein dppf or atu4620 or agr_l_526 SWALL:Q8U736 (EMBL:AE009390) (245 aa) fasta scores: E(): 2.7e-36%2C 51.28 38d in 234 aa gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=YE0487 YE0488 YE0488 YE0488 563135 564013 - putative ABC transporter transporter%2CATP-binding protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=YE0488 YE0489 YE0489 YE0489 564006 564839 - putative transporter%2C permease protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=YE0489 YE0490 YE0490 YE0490 564841 565890 - putative transporter%2C permease protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=YE0490 YE0491 YE0491 YE0491 566062 567630 - ABC transporter%2C substrate binding protein Similar to many putative ABC transport proteins including: Agrobacterium tumefaciens ABC transporter%2Csubstrate binding protein DppA or atu2518 or agr_c_4574 SWALL:Q8UCG9 (EMBL:AE009198) (570 aa) fasta scores: E(): 2.7e-66%2C 38.78 38d in 508 aa and Rhizobium meliloti putative dipeptide binding periplasmic protein DppA2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 1.9e-45%2C 41.07 38d in 521 aa gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=YE0491 YE0492 YE0492 YE0492 567965 568423 + conserved hypothetical protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=YE0492 YE0494 YE0494 argI argI 568754 569761 - ornithine carbamoyltransferase chain I gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=YE0494 YE0495 YE0495 YE0495 569932 570363 + conserved hypothetical protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=YE0495 YE0497 YE0497 YE0497 570858 571361 - putative acetyltransferase gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=YE0497 YE0498 YE0498 valS valS 571621 574518 - valyl-tRNA synthetase gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=YE0498 YE0499 YE0499 holC holC 574532 574981 - DNA polymerase III%2C chi subunit gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=YE0499 YE0500 YE0500 pepA pepA 575141 576652 - cytosol aminopeptidase gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=YE0500 YE0501 YE0501 YE0501 576932 578026 + putative membrane protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=YE0501 YE0502 YE0502 YE0502 578026 579096 + putative membrane protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=YE0502 YE0505 YE0505 YE0505 579768 581027 + phage integrase (pseudogene) Similar to many P2-like integrases including: Photorhabdus luminescens IntB SWALL:Q9AI09 (EMBL:AF288080) (417 aa) fasta scores: E(): 7.1e-117%2C 66.82 38d in 416 aa%2CYersinia pestis integrase IntB or Ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 2.2e-109%2C62.91 38d in 418 aa and to Bacteriophage P4 Integrase Int SWALL:VINT_BPP4 (SWALL:P08320) (439 aa) fasta scores: E(): 3.6e-99%2C 58.19 38d in 409 aa. Note this CDS contains a stop codon following codon 8 pseudogene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=YE0505 YE0506 YE0506 YE0506 581162 581530 - hypothetical protein no significant database hits gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=YE0506 YE0507 YE0507 YE0507 582024 582149 + hypothetical protein doubtful CDS with no significant database hits gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=YE0507 YE0508 YE0508 YE0508 582203 582331 - hypothetical protein doubtful CDS with no significant database hits gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=YE0508 YE0510 YE0510 relB relB 582668 582922 + RelB protein Highly similar to Escherichia coli RelB protein which has undefined regulatory functions%2C SWALL:RELB_ECOLI (SWALL:P07007) (79 aa) fasta scores: E(): 8.1e-13%2C 50 38d in 84 aa. Also similar to Shigella flexneri 2a hypothetical 15.3 kDa protein C0193 SWALL:Q8VSE3 (EMBL:AF386526) (135 aa) fasta scores: E(): 0.0006%2C 35.82 id in 67 aa gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=YE0510 YE0510A YE0510A YE0510A 582912 583202 + conserved hypothetical protein Similar to Escherichia coli hypothetical RelE-like protein (b1563) SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 1e-17%2C 55.78 38d in 95 aa and to Escherichia coli hypothetical RelE-like protein RelX SWALL:RELX_ECOLI (SWALL:Q60228) (95 aa) fasta scores: E(): 1.4e-18%2C 58.33 38d in 96 aa gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=YE0510A YE0511 YE0511 YE0511 583381 583731 - putative phage-related protein (fragment) Similar to the very C-terminus of Yersinia pestis putative regulatory prophage protein Ypo1089 SWALL:Q8ZH24 (EMBL:AJ414146) (362 aa) fasta scores: E(): 1.7e-43%2C96.55 38d in 116 aa. This CDS appears to be a gene remnant. pseudogene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=YE0511 YE0512 YE0512 YE0512 583769 584098 + hypothetical protein no significant database hits gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=YE0512 YE0513 YE0513 YE0513 584459 584869 + putative acetyltransferase Similar to many including: Pantoea agglomerans hypothetical 17.3 kDa protein SWALL:Q937I1 (EMBL:X99768) (149 aa) fasta scores: E(): 7.4e-16%2C 42.1 38d in 133 aa%2CSalmonella typhi putative acetyltransferase Sty1991 SWALL:Q8Z655 (EMBL:AL627272) (139 aa) fasta scores: E(): 8.8e-13%2C 40.58 38d in 138 aa and to Streptoverticillium sp. blasticidin S-acetyltransferase BlS SWALL:BLS_STRSJ (SWALL:P19997) (136 aa) fasta scores: E(): 2.4e-09%2C 35.08 id in 114 aa gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=YE0513 YE0514 YE0514 YE0514 584895 585584 + putative transcriptional regulator Similar to many including: Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 8.4e-06%2C26.47 38d in 204 aa and Vibrio cholerae transcriptional regulator%2C LuxR family Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 6.8e-05%2C22.42 38d in 223 aa gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=YE0514 YE0515 YE0515 YE0515 585621 586928 + putative permease gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=YE0515 YE0516 YE0516 YE0516 587027 587191 + putative membrane protein doubtful CDS with no significant database hits gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=YE0516 YE0517 YE0517 YE0517 587567 587755 - putative membrane protein doubtful CDS with no significant database hits gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=YE0517 YE0518 YE0518 YE0518 587957 589264 + putative permease Similar to Escherichia coli cytosine permease CodB or b0336 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 1.8e-23%2C 28.03 38d in 428 aa and Streptomyces coelicolor putative cytosine permease Sco0572 or Sc5g5.04C SWALL:Q93RZ8 (EMBL:AL591823) (466 aa) fasta scores: E(): 6.3e-51%2C 38.15 38d in 422 aa gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=YE0518 YE0519 YE0519 YE0519 589409 590173 + hypothetical protein Weakly similar to several e.g. Zymomonas mobilis hypothetical 36.8 kDa protein SWALL:Q9Z668 (EMBL:AF102543) (318 aa) fasta scores: E(): 8.1e-09%2C 28.34 38d in 254 aa gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=YE0519 YE0520 YE0520 YE0520 590196 590498 - putative exported protein Weakly similar to Pseudomonas syringae putative RNA polymerase sigma factor HrpL SWALL:Q9R9F2 (EMBL:AB016369) (184 aa) fasta scores: E(): 4.2%2C 30.23 38d in 86 aa gene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=YE0520 YE0521 YE0521 YE0521 590732 591214 - conserved hypothetical protein Similar to several including: Yersinia pestis putative exported protein Ypo0406 SWALL:Q8ZIT2 (EMBL:AJ414142) (163 aa) fasta scores: E(): 1.4e-40%2C77.91 38d in 163 aa%2C and to Escherichia coli hypothetical protein precursor YjjA or b4360 SWALL:YJJA_ECOLI (SWALL:P18390) (164 aa) fasta scores: E(): 1.8e-20%2C 45.39 id in 163 aa. Contains a possible N-terminal hydrophobic region. gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=YE0521 YE0522 YE0522 YE0522 591339 591899 - putative exported protein no signiificant database hits pseudogene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=YE0522 YE0523 YE0523 YE0523 592004 592294 - conserved hypothetical protein gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=YE0523 YE0524 YE0524 YE0524 592356 593231 - putative aldolase gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=YE0524 YE0525 YE0525 YE0525 593287 594321 - putative periplasmic solute-binding protein gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=YE0525 YE0526 YE0526 YE0526 594378 595373 - putative ABC transporter permease protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=YE0526 YE0527 YE0527 YE0527 595370 596359 - putative ABC transporter permease protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=YE0527 YE0528 YE0528 YE0528 596446 598029 - putative ABC transporter ATP-binding protein gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=YE0528 YE0529 YE0529 YE0529 598407 599384 + putative transcriptional regulatory protein gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=YE0529 YE0530 YE0530 YE0530 599707 601257 + putative carbohydrate kinase gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=YE0530 YE0531 YE0531 YE0531 601930 602877 + putative lipopolysaccharide core biosynthesis protein gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=YE0531 YE0532 YE0532 YE0532 602964 604187 + putative O-antigen biosynthesis protein gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=YE0532 YE0534 YE0534 arcD arcD 605641 607149 + arginine/ornithine antiporter Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD or Pa5170 SWALL:ARCD_PSEAE (SWALL:P18275) (482 aa) fasta scores: E(): 1.1e-40%2C 52.06 38d in 509 aa and Rhizobium meliloti probable arcd1 arginine/ornithine antiporter ArcD1 or Ra0913 or sma1667 SWALL:Q92YG7 (EMBL:AE007277) (475 aa) fasta scores: E(): 1.9e-59%2C 59.11 38d in 499 aa gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=YE0534 YE0535 YE0535 arcA arcA 607165 608448 + arginine deiminase Similar to Pseudomonas aeruginosa arginine deiminase ArcA or Pa5171 SWALL:ARCA_PSEAE (SWALL:P13981) (417 aa) fasta scores: E(): 4.1e-117%2C 66.02 38d in 418 aa and Rhizobium loti arginine deiminase Mll6733 SWALL:Q988I1 (EMBL:AP003010) (412 aa) fasta scores: E(): 5.4e-128%2C75.18 38d in 415 aa gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=YE0535 YE0536 YE0536 YE0536 608930 610012 + putative lipoprotein gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=YE0536 YE0537 YE0537 YE0537 610012 613098 + putative multi-drug efflux protein gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=YE0537 YE0538 YE0538 YE0538 613229 614563 + transposase for insertion sequence element IS1660 Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=YE0538 YE0539 YE0539 gldA gldA 614850 615944 + glycerol dehydrogenase Similar to Citrobacter freundii glycerol dehydrogenase DhaD SWALL:GLDA_CITFR (SWALL:P45511) (365 aa) fasta scores: E(): 3.2e-103%2C 73.82 38d in 363 aa and Escherichia coli glycerol dehydrogenase GldA or b3945 SWALL:GLDA_ECOLI (SWALL:P32665) (367 aa) fasta scores: E(): 6.4e-80%2C 58.12 38d in 363 aa gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=YE0539 YE0540 YE0540 dhaK dhaK 615982 617106 + putative dihydroxyacetone kinase gene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=YE0540 YE0541 YE0541 YE0541 617124 617756 + conserved hypothetical protein gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=YE0541 YE0542 YE0542 YE0542 617790 619223 + multifunctional PTS-system sugar transferase Similar in the N-terminus to several phosphocarrier proteins e.g. Escherichia coli putative multiphosphoryl transfer protein PmpT SWALL:Q8VP39 (EMBL:AF289032) blast scores: E(): 2e-36%2C score: 387 41 38d. Similar in the C-terminal region to many PEP-binding proteins e.g. Caulobacter crescentus pts system%2C fructose-specific EIIA/Hpr/EI components Cc0537 SWALL:Q9AAQ9 (EMBL:AE005726) blast scores: E(): 8e-26%2C score: 296 29 38d. Similar over entire length to Escherichia coli O157:H7 putative pts system enzyme I Ycgc or z1969 or ecs1703 SWALL:Q8XDH6 (EMBL:AE005337) (473 aa) fasta scores: E(): 1.3e-62%2C47.87 38d in 447 aa gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=YE0542 YE0543 YE0543 YE0543 619269 620474 - putative glycosyltransferase Similar to many possible glycosyltransferases e.g. Streptomyces lincolnensis LmbT protein SWALL:Q54374 (EMBL:X79146) (411 aa) fasta scores: E(): 1.3e-13%2C 25.94 id in 316 aa%2C and to Pyrobaculum aerophilum Pae0440 SWALL:Q8ZZ46 (EMBL:AE009767) (360 aa) fasta scores: E(): 1.9e-05%2C 26.77 38d in 310 aa gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=YE0543 YE0544 YE0544 YE0544 620654 622363 - putative transferase Similar in parts to many transferases: Rhizobium sp. nodulation protein NolO or Y4hD SWALL:NOLO_RHISN (SWALL:P55474) (680 aa) fasta scores: E(): 1.1e-44%2C 32.94 id in 607 aa and Ralstonia solanacearum putative transferase protein Rsp0788 or rs01919 SWALL:Q8XRP3 (EMBL:AL646080) (581 aa) fasta scores: E(): 2.7e-42%2C35.71 38d in 490 aa gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=YE0544 YE0545 YE0545 YE0545 622394 623896 - putative oxidoreductase Similar to Streptomyces griseus NADH:N-amidino-scyllo-inosamine oxidoreductase lying within the streptomycin biosynthetic operon StsB SWALL:P72455 (EMBL:Y08763) (489 aa) fasta scores: E(): 2.8e-30%2C 31.45 38d in 461 aa gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=YE0545 YE0546 YE0546 YE0546 623925 625358 - hypothetical protein no significant database hits gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=YE0546 YE0547 YE0547 YE0547 625375 626550 - putative membrane transport protein Similar to many possible membrane transport proteins including: Rhizobium meliloti putative transport protein R03272 or smc03889 SWALL:Q92L18 (EMBL:AL591793) (379 aa) fasta scores: E(): 3.1e-24%2C 26.75 38d in 385 aa%2CYersinia pestis putative membrane protein Ypo1221 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 4e-19%2C 26.12 38d in 379 aa and to Borrelia burgdorferi multidrug-efflux transporter Bbi26 SWALL:O50880 (EMBL:AE000789) (392 aa) fasta scores: E(): 2e-05%2C 22.42 id in 388 aa gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=YE0547 YE0548 YE0548 YE0548 626577 627443 - conserved hypothetical protein Similar to Anabaena sp. hypothetical protein All3084 all3084 SWALL:Q8YSK1 (EMBL:AP003591) (222 aa) fasta scores: E(): 1.2e-06%2C 29.24 38d in 212 aa gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=YE0548 YE0549 YE0549 YE0549 627938 629023 + putative pectinesterase gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=YE0549 YE0550 YE0550 dhaR dhaR 629026 630945 - glycerol metabolism operon regulatory protein Similar to Escherichia coli glycerol metabolism operon regulatory protein DhaR or b1201 SWALL:DHAR_ECOLI (SWALL:P76016) (639 aa) fasta scores: E(): 3.7e-126%2C52.08 38d in 624 aa and Citrobacter freundii glycerol metabolism operon regulatory protein DhaR SWALL:DHAR_CITFR (SWALL:P45512) (641 aa) fasta scores: E(): 1.2e-126%2C52.91 38d in 618 aa gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=YE0550 YE0550A YE0550A scrR scrR 630932 631966 - sucrose operon repressor Similar to Klebsiella pneumoniae sucrose operon repressor ScrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 2e-87%2C 64.79 38d in 338 aa and Salmonella typhimurium sucrose operon repressor ScrR SWALL:SCRR_SALTY (SWALL:P37077) (334 aa) fasta scores: E(): 3.6e-87%2C 64.77 38d in 335 aa gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=YE0550A YE0551 YE0551 scrB scrB 632013 633422 - sucrose-6-phosphate hydrolase Similar to Klebsiella pneumoniae sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_KLEPN (SWALL:P27217) (465 aa) fasta scores: E(): 1.2e-113%2C56.31 38d in 467 aa and Salmonella typhimurium sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_SALTY (SWALL:P37075) (466 aa) fasta scores: E(): 5e-112%2C 54.58 id in 469 aa gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=YE0551 YE0552 YE0552 scrA scrA 633422 634792 - PTSsystem%2C sucrose-specific IIbc component Similar to Salmonella typhimurium PTS system%2Csucrose-specific IIbc component ScrA SWALL:PTSB_SALTY (SWALL:P08470) (456 aa) fasta scores: E(): 1.7e-140%2C83.11 38d in 456 aa and Klebsiella pneumoniae PTS system%2Csucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 1.9e-140%2C82.45 38d in 456 aa gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=YE0552 YE0553 YE0553 scrY scrY 634860 636398 - sucrose porin Similar to Salmonella typhimurium sucrose porin precursor ScrY SWALL:SCRY_SALTY (SWALL:P22340) (505 aa) fasta scores: E(): 2.7e-129%2C 65.43 38d in 512 aa and Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 2.7e-127%2C 64.85 38d in 515 aa gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=YE0553 YE0554 YE0554 scrK scrK 636697 637632 - fructokinase Similar to Klebsiella pneumoniae fructokinase ScrK SWALL:SCRK_KLEPN (SWALL:P26420) (307 aa) fasta scores: E(): 9.3e-69%2C 59.28 38d in 307 aa and Salmonella typhimurium fructokinase ScrK SWALL:SCRK_SALTY (SWALL:P26984) (307 aa) fasta scores: E(): 1e-66%2C 59.4 38d in 303 aa gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=YE0554 YE0555 YE0555 YE0555 637836 638981 + putative iron transporter Similar to many transport proteins including: Rhizobium meliloti putative transport transmembrane protein R02271 or smc01659 SWALL:Q92ND7 (EMBL:AL591790) (377 aa) fasta scores: E(): 3.3e-39%2C 32.79 38d in 372 aa and Methanosarcina acetivorans Fe FecC or ma2148 SWALL:AAM05546 (EMBL:AE010901) (389 aa) fasta scores: E(): 7.3e-37%2C 31.75 38d in 381 aa gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=YE0555 YE0556 YE0556 YE0556 639479 641635 + putative iron transporter Similar to Escherichia coli iron(III) dicitrate transport system FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 8.4e-78%2C 44.65 id in 701 aa%2C and to Pseudomonas aeruginosa probable Tonb-dependent receptor Pa3268 SWALL:Q9HYX3 (EMBL:AE004749) (721 aa) fasta scores: E(): 1.4e-135%2C55.75 38d in 739 aa gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=YE0556 YE0557 YE0557 hmsT hmsT 642071 643171 - HmsT protein gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=YE0557 YE0558 YE0558 YE0558 643558 643782 + putative membrane protein gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=YE0558 YE0559 YE0559 YE0559 644247 645335 - LysR-family regulatory protein gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=YE0559 YE0560 YE0560 YE0560 645290 646282 + putative oxidoreductase Similar to many including: Pseudomonas aeruginosa probable oxidoreductase Pa2535 SWALL:Q9I0U9 (EMBL:AE004681) (331 aa) fasta scores: E(): 4.9e-90%2C68.48 38d in 330 aa and to Salmonella typhi putative aldo/keto reductase Sty0158 SWALL:Q8Z9G1 (EMBL:AL627265) (329 aa) fasta scores: E(): 2.8e-84%2C 65.04 38d in 329 aa gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=YE0560 YE0561 YE0561 rsmC rsmC 646301 647344 - ribosomal RNA small subunit methyltransferase C gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=YE0561 YE0562 YE0562 holD holD 647457 647894 + DNA polymerase III%2C psi subunit gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=YE0562 YE0563 YE0563 rimI rimI 647839 648282 + ribosomal-protein-alanine acetyltransferase gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=YE0563 YE0564 YE0564 prfC prfC 648533 650122 + peptide chain release factor 3 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=YE0564 YE0565 YE0565 osmY osmY 650433 651047 + osmotically inducible protein Y gene gene574 http://www.ncbi.nlm.nih.gov/gene/?term=YE0565 YE0567 YE0567 YE0567 651616 652869 + conserved hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=YE0567 YE0568 YE0568 YE0568 652890 653687 + putative metalloenzyme gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=YE0568 YE0569 YE0569 YE0569 653889 655160 + putative Na+ dependent nucleoside transporter-family protein gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=YE0569 YE0570 YE0570 deoC deoC 655540 656337 + deoxyribose-phosphate aldolase gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=YE0570 YE0571 YE0571 deoA deoA 656425 657747 + thymidine phosphorylase Highly similar to Escherichia coli thymidine phosphorylase DeoA or B4382 SWALL:TYPH_ECOLI (SWALL:P07650) (440 aa) fasta scores: E(): 1.6e-140%2C84.31 38d in 440 aa and to Salmonella typhimurium and Salmonella typhi thymidine phosphorylase DeoA or Stm4568 or Sty4919 SWALL:Q8XF46 (EMBL:AE008915) (440 aa) fasta scores: E(): 2.8e-142%2C 86.36 38d in 440 aa gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=YE0571 YE0572 YE0572 deoB deoB 657801 659024 + phosphopentomutase gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=YE0572 YE0574 YE0574 deoD deoD 659248 659973 + purine nucleoside phosphorylase gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=YE0574 YE0575 YE0575 YE0575 660151 661494 + putative DNA-binding protein Similar to Escherichia coli hypothetical protein YjjJ or B4385 SWALL:YJJJ_ECOLI (SWALL:P39410) (443 aa) fasta scores: E(): 7.3e-75%2C 46.56 38d in 451 aa gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=YE0575 YE0576 YE0576 smp smp 661521 662198 - putative membrane protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=YE0576 YE0578 YE0578 serB serB 662434 663414 + phosphoserine phosphatase gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=YE0578 YE0579 YE0579 radA radA 663442 664827 + DNA repair protein RadA gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=YE0579 YE0580 YE0580 nadR nadR 664901 666184 + transcriptional regulator NadR gene gene586 http://www.ncbi.nlm.nih.gov/gene/?term=YE0580 YE0581 YE0581 YE0581 666181 667182 - putative oxidoreductase Similar to several including: Bacillus halodurans alginate lyase Bh0738 SWALL:Q9KEW1 (EMBL:AP001509) (339 aa) fasta scores: E(): 1.5e-53%2C 49.11 38d in 338 aa and to Pseudomonas aeruginosa probable oxidoreductase Pa3567 SWALL:Q9HY50 (EMBL:AE004777) (337 aa) fasta scores: E(): 4.9e-52%2C 46.13 38d in 336 aa gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=YE0581 YE0582 YE0582 YE0582 667345 668256 + putative LysR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa3135 SWALL:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.8e-32%2C 36.8 id in 307 aa%2C and to Rhizobium loti transcriptional regulator Mlr7606 SWALL:Q985M8 (EMBL:AP003012) (299 aa) fasta scores: E(): 4.8e-30%2C 37.11 38d in 291 aa gene gene588 http://www.ncbi.nlm.nih.gov/gene/?term=YE0582 YE0583 YE0583 YE0583 668337 669467 + conserved hypothetical protein gene gene589 http://www.ncbi.nlm.nih.gov/gene/?term=YE0583 YE0584 YE0584 YE0584 669527 671173 - ABC transporter protein%2C ATP-binding component Similar to many ABC-family transport proteins including: Escherichia coli%2C and Escherichia coli O157:H7 ABC transporter ATP-binding protein YjjK or b4391 or z5993 or ecs5349 SWALL:YJJK_ECOLI (SWALL:P37797) (554 aa) fasta scores: E(): 2.3e-155%2C 89.96 38d in 548 aa and to Salmonella typhimurium putative ABC superfamily YjjK or Stm4581 SWALL:Q8ZJU9 (EMBL:AE008915) (555 aa) fasta scores: E(): 4e-155%2C 89.59 38d in 548 aa gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=YE0584 YE0585 YE0585 YE0585 671835 672344 - putative lipoprotein Similar to many lipoproteins including: Yersinia pestis putative lipoprotein Ypo0448 SWALL:Q8ZIP6 (EMBL:AJ414142) (168 aa) fasta scores: E(): 7.5e-47%2C75.59 38d in 168 aa and to Escherichia coli putative lipoprotein YfiB or b2605 SWALL:YFIB_ECOLI (SWALL:P07021) (160 aa) fasta scores: E(): 8.2e-23%2C 47.29 38d in 148 aa gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=YE0585 YE0586 YE0586 YE0586 672355 673578 - putative exported protein gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=YE0586 YE0587 YE0587 YE0587 673677 674309 - putative membrane protein gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=YE0587 YE0588 YE0588 YE0588 674513 677158 - putative cation-transporting P-type ATPase gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=YE0588 YE0589 YE0589 slt slt 677714 679633 + putative soluble lytic murein transglycosylase gene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=YE0589 YE0590 YE0590 trpR trpR 679880 680212 + putative trp operon repressor Similar to many proposed trp operon repressors including: Yersinia pestis TrpR or Ypo0453 or y3726 SWALL:TRPR_YERPE (SWALL:P58700) (125 aa) fasta scores: E(): 1e-34%2C 92.07 38d in 101 aa and to Salmonella typhimurium Stm4583 SWALL:TRPR_SALTY (SWALL:P37444) (108 aa) fasta scores: E(): 2.8e-25%2C 69.15 38d in 107 aa gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=YE0590 YE0591 YE0591 YE0591 680221 680748 - conserved hypothetical protein gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=YE0591 YE0592 YE0592 gpmB gpmB 680805 681452 + putative phosphoglycerate mutase gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=YE0592 YE0593 YE0593 rob rob 681449 682315 - putative right origin-binding protein gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=YE0593 YE0594 YE0594 creA creA 682540 683010 + putative exported protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=YE0594 YE0595 YE0595 arcA arcA 683089 683805 - aerobic respiration control protein gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=YE0595 YE0596 YE0596 YE0596 683908 684048 + conserved hypothetical protein Similar to Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein YjjY or stm4599 or sty4948 SWALL:Q8XFA6 (EMBL:AE008916) (46 aa) fasta scores: E(): 1.8e-07%2C 68.88 38d in 45 aa and Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YjjY or b4402 or z6005 or ecs5360 SWALL:YJJY_ECOLI (SWALL:P39412) (46 aa) fasta scores: E(): 1.8e-07%2C 68.88 38d in 45 aa gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=YE0596 YE0598 YE0598 YE0598 684458 684793 - transposase for insertion sequence element IS1665 Similar to the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 3.9e-52%2C 50.22 id in 440 aa and to Shigella flexneri IS4 S0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 3.9e-52%2C 48.81 38d in 422 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences. gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=YE0598 YE0599 YE0599 YE0599 685300 686637 - transposase for insertion sequence element IS1660 Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 2e-165%2C 89.72 id in 438 aa%2C and to Pantoea agglomerans nsertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.8e-86%2C 52.42 38d in 433 aa. This IS element has been partially disrupted by the insertion of IS1665 removing 19 bp. gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=YE0599 YE0600 YE0600 thrA thrA 687253 689712 + bifunctional aspartokinase/homoserine dehydrogenase I gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=YE0600 YE0601 YE0601 thrB thrB 689715 690644 + homoserine kinase gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=YE0601 YE0602 YE0602 thrC thrC 690648 691937 + threonine synthase gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=YE0602 YE0603 YE0603 YE0603 692084 692860 - conserved hypothetical protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=YE0603 YE0604 YE0604 talB talB 693271 694224 + transaldolase B gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=YE0604 YE0605 YE0605 mogA mogA 694381 694968 + molybdopterin biosynthesis protein gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=YE0605 YE0606 YE0606 YE0606 695097 696464 + putative transport protein gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=YE0606 YE0607 YE0607 YE0607 696532 698982 - conserved hypothetical protein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=YE0607 YE0608 YE0608 yaaH yaaH 699221 699814 - putative membrane protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=YE0608 YE0609 YE0609 dnaK dnaK 700187 702094 + chaperone protein DnaK gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=YE0609 YE0610 YE0610 dnaJ dnaJ 702206 703336 + chaperone protein DnaJ gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=YE0610 YE0611 YE0611 nhaA nhaA 703567 704745 + sodium-proton antiporter gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=YE0611 YE0612 YE0612 nhaR nhaR 704895 705794 + transcriptional activator protein NhaR gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=YE0612 YE0613 YE0613 rpsT rpsT 705938 706201 - 30S ribosomal protein S20 gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=YE0613 YE0615 YE0615 ribF ribF 706615 707553 + riboflavin biosynthesis protein (includes: riboflavin kinase and FMN adenyltransferase) gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=YE0615 YE0616 YE0616 ileS ileS 707585 710401 + isoleucyl-tRNA synthetase gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=YE0616 YE0617 YE0617 lspA lspA 710401 710910 + lipoprotein signal peptidase gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=YE0617 YE0618 YE0618 fkpB fkpB 710960 711397 + FKBP-type peptidyl-prolyl cis-trans isomerase gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=YE0618 YE0619 YE0619 lytB lytB 711378 712331 + LytB protein gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=YE0619 YE0620 YE0620 dapB dapB 712666 713487 + dihydrodipicolinate reductase gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=YE0620 YE0621 YE0621 carA carA 713960 715123 + carbamoyl-phosphate synthase small chain gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=YE0621 YE0622 YE0622 carB carB 715140 718373 + carbamoyl-phosphate synthase large chain gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=YE0622 YE0623 YE0623 YE0623 718571 719185 - putative LysE type translocator gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=YE0623 YE0624 YE0624 yjjP yjjP 719338 720135 + putative membrane protein gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=YE0624 YE0625 YE0625 YE0625 720135 720599 + putative membrane protein gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=YE0625 YE0626 YE0626 folA folA 720773 721234 + dihydrofolate reductase gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=YE0626 YE0628 YE0628 apaH apaH 721382 722260 - bis(5'nucleosyl)-tetraphosphatase gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=YE0628 YE0629 YE0629 apaG apaG 722275 722652 - ApaG protein homologue gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=YE0629 YE0630 YE0630 ksgA ksgA 722666 723484 - dimethyladenosine transferase gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=YE0630 YE0631 YE0631 pdxA pdxA 723477 724472 - pyridoxal phosphate biosynthetic protein gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=YE0631 YE0632 YE0632 surA surA 724456 725760 - survival protein SurA precursor (peptidyl-prolyl cis-trans isomerase) gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=YE0632 YE0633 YE0633 imp imp 725828 728194 - organic solvent tolerance protein precursor gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=YE0633 YE0634 YE0634 djlA djlA 728454 729206 + DnaJ-like protein gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=YE0634 YE0635 YE0635 rluA rluA 729292 729882 - ribosomal large subunit pseudouridine synthase A gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=YE0635 YE0636 YE0636 rapA rapA 730023 732929 - RNA polymerase associated helicase gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=YE0636 YE0637 YE0637 polB polB 733066 735438 - DNA polymerase II gene gene640 http://www.ncbi.nlm.nih.gov/gene/?term=YE0637 YE0639 YE0639 YE0639 735879 736649 + putative DedA-family membrane protein gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=YE0639 YE0640 YE0640 thiQ thiQ 736636 737292 - thiamine transport ATP-binding protein gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=YE0640 YE0641 YE0641 thiP thiP 737324 738871 - thiamine transport system permease protein gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=YE0641 YE0642 YE0642 tbpA tbpA 738907 739869 - thiamine-binding periplasmic protein gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=YE0642 YE0643 YE0643 YE0643 740349 741152 + putative membrane protein Weakly similar to Yersinia pestis hypothetical protein Ypo2963 SWALL:Q8ZCL9 (EMBL:AJ414154) (282 aa) fasta scores: E(): 3.7e-12%2C 27.02 38d in 259 aa gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=YE0643 YE0644 YE0644 YE0644 741654 743315 - conserved hypothetical protein gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=YE0644 YE0645 YE0645 YE0645 743440 744339 + putative pyruvate formate-lyase 3 activating enzyme Similar to many pyruvate formate-lyase 3 activating enzymes including: Escherichia coli putative YbiY or b0824 SWALL:PFLE_ECOLI (SWALL:P75794) (308 aa) fasta scores: E(): 6.9e-78%2C 63.88 38d in 299 aa and to Salmonella typhi putative YbiY or Sty0883 SWALL:Q8Z867 (EMBL:AL627268) (299 aa) fasta scores: E(): 3.2e-79%2C64.54 38d in 299 aa gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=YE0645 YE0646 YE0646 YE0646 744344 746776 + putative formate acetyltransferase Similar to Escherichia coli putative formate acetyltransferase 3 YbiW or b0823 SWALL:PFLF_ECOLI (SWALL:P75793) (810 aa) fasta scores: E(): 0%2C 84.56 38d in 810 aa%2C and to Salmonella typhimurium putative pyruvate formate lyase pflf or stm0843 SWALL:Q8ZQM6 (EMBL:AE008735) (810 aa) fasta scores: E(): 0%2C 84.44 38d in 810 aa gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=YE0646 YE0647 YE0647 YE0647 746972 747175 + putative DNA-damage-inducible protein gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=YE0647 YE0648 YE0648 setA setA 747546 748727 + sugar efflux transporter gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=YE0648 YE0649 YE0649 mtr mtr 748884 750146 - tryptophan-specific transport protein Similar to Escherichia coli tryptophan-specific transport protein Mtr or b3161 SWALL:MTR_ECOLI (SWALL:P22306) (414 aa) fasta scores: E(): 6.2e-122%2C75.98 38d in 404 aa and to Salmonella typhimurium haaap family%2C tryptophan-specific transport protein Mtr or Stm3279 SWALL:Q8ZLT5 (EMBL:AE008851) (414 aa) fasta scores: E(): 7.6e-123%2C 76.73 38d in 404 aa gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=YE0649 YE0650 YE0650 tnaA tnaA 750255 751655 - tryptophanase Similar to many including: Enterobacter aerogenes tryptophanase TnaA SWALL:TNAA_ENTAE (SWALL:Q59342) (462 aa) fasta scores: E(): 2e-166%2C 85.83 38d in 466 aa and to Proteus vulgaris tryptophanase TnaA SWALL:TNAA_PROVU (SWALL:P28796) (467 aa) fasta scores: E(): 3.1e-138%2C71.39 38d in 465 aa gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=YE0650 YE0651 YE0651 leuD leuD 752330 752893 - 3-isopropylmalate dehydratase small subunit gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=YE0651 YE0652 YE0652 leuC leuC 752965 754395 - 3-isopropylmalate dehydratase large subunit gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=YE0652 YE0653 YE0653 leuB leuB 754397 755494 - 3-isopropylmalate dehydrogenase gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=YE0653 YE0654 YE0654 leuA leuA 755491 757053 - 2-isopropylmalate synthase gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=YE0654 YE0655 YE0655 leuO leuO 758158 759114 + LysR-family transcriptional regulator LeuO gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=YE0655 YE0656 YE0656 YE0656 759447 761246 + putative AMP-binding enzyme-family protein gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=YE0656 YE0658 YE0658 ilvI ilvI 761712 763439 + acetolactate synthase isozyme III large subunit gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=YE0658 YE0659 YE0659 ilvH ilvH 763442 763936 + acetolactate synthase isozyme III small subunit gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=YE0659 YE0661 YE0661 fruR fruR 764279 765283 + putative fructose repressor gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=YE0661 YE0662 YE0662 YE0662 765339 765785 - putative membrane protein gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=YE0662 YE0663 YE0663 YE0663 766702 767160 + conserved hypothetical protein gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=YE0663 YE0664 YE0664 YE0664 767163 768125 + conserved hypothetical protein gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=YE0664 YE0665 YE0665 ftsL ftsL 768122 768442 + putative cell division protein gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=YE0665 YE0666 YE0666 ftsI ftsI 768503 770266 + penicillin-binding protein 3 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=YE0666 YE0667 YE0667 murE murE 770268 771740 + UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-dia minopimelate ligase gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=YE0667 YE0668 YE0668 murF murF 771737 773101 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diami nopimelate--D-alanyl-D-alanyl ligase gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=YE0668 YE0669 YE0669 mraY mraY 773095 774177 + phospho-N-acetylmuramoyl-pentapeptide-transfera se gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=YE0669 YE0670 YE0670 murD murD 774180 775514 + UDP-N-acetylmuramoylalanine--D-glutamate ligase gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=YE0670 YE0671 YE0671 ftsW ftsW 775514 776716 + cell division protein FtsW gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=YE0671 YE0672 YE0672 murG murG 776713 777780 + UDP-N-acetylglucosamine:N-acetylmuramyl-(pentap eptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=YE0672 YE0673 YE0673 murC murC 777854 779329 + UDP-N-acetylmuramate--alanine ligase gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=YE0673 YE0674 YE0674 ddlB ddlB 779322 780242 + D-alanine--D-alanine ligase B gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=YE0674 YE0675 YE0675 ftsQ ftsQ 780244 781101 + cell division protein FtsQ gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=YE0675 YE0676 YE0676 ftsA ftsA 781098 782354 + cell division protein FtsA gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=YE0676 YE0677 YE0677 ftsZ ftsZ 782427 783578 + cell division protein FtsZ gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=YE0677 YE0678 YE0678 lpxC lpxC 783664 784599 + UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=YE0678 YE0679 YE0679 YE0679 784809 785339 - conserved hypothetical protein gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=YE0679 YE0680 YE0680 YE0680 785362 785895 + putative exported protein gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=YE0680 YE0681 YE0681 secA secA 785973 788687 + preprotein translocase SecA gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=YE0681 YE0682 YE0682 mutT mutT 788821 789207 + mutator protein MutT gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=YE0682 YE0683 YE0683 YE0683 789279 789485 - conserved hypothetical protein gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=YE0683 YE0684 YE0684 YE0684 789530 790282 - conserved hypothetical protein gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=YE0684 YE0685 YE0685 YE0685 790279 790899 - conserved hypothetical protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=YE0685 YE0686 YE0686 guaC guaC 791193 792236 + GMP reductase gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=YE0686 YE0688 YE0688 hofC hofC 792555 793754 - putative type II secretion system protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=YE0688 YE0689 YE0689 hofC hofC 793751 795205 - HofC protein Similar to Yersinia pestis putative type II secretion system protein HofB or Ypo3426 SWALL:Q8ZBI4 (EMBL:AJ414157) (512 aa) fasta scores: E(): 2.8e-109%2C 71 id in 500 aa and to Escherichia coli protein transport protein HofB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 2.4e-70%2C 49.03 38d in 467 aa gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=YE0689 YE0690 YE0690 ppdD ppdD 795222 795656 - putative prepilin peptidase dependent protein D precursor gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=YE0690 YE0691 YE0691 nadC nadC 795861 796769 - nicotinate-nucleotide pyrophosphorylase [carboxylating] gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=YE0691 YE0692 YE0692 ampD ampD 796999 797463 + putative signalling protein in beta-lactamase regulation gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=YE0692 YE0693 YE0693 ampE ampE 797608 798462 + putative membrane-bound sensory transducer in beta-lactamase regulation gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=YE0693 YE0694 YE0694 YE0694 798922 806376 + putative adhesin Similar to many adhesins including: Escherichia coli O127:H6 intimin Eae or EaeA SWALL:EAE_ECO27 (SWALL:P19809) (939 aa) fasta scores: E(): 1.3e-57%2C 34.3 id in 720 aa and Yersinia pestis putative invasin Ypo3944 SWALL:Q8ZA73 (EMBL:AJ414159) (3013 aa) fasta scores: E(): 2.8e-74%2C 28.71 38d in 2173 aa gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=YE0694 YE0695 YE0695 aroP aroP 806465 807838 - aromatic amino acid transport protein gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=YE0695 YE0698 YE0698 pdhR pdhR 808535 809299 + pyruvate dehydrogenase complex repressor gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=YE0698 YE0699 YE0699 aceE aceE 809476 812139 + pyruvate dehydrogenase E1 component gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=YE0699 YE0701 YE0701 aceF aceF 812153 814030 + dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=YE0701 YE0702 YE0702 lpdA lpdA 814406 815833 + dihydrolipoamide dehydrogenase component of pyruvate dehydrogenase complex gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=YE0702 YE0703 YE0703 YE0703 816140 817153 - AraC-family transcriptional regulator Similar to several AraC-family transcriptional regulators: Salmonella typhi Sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 4.3e-16%2C 28 id in 325 aa and Brucella melitensis Bmeii0104 SWALL:Q8YDS1 (EMBL:AE009648) (233 aa) fasta scores: E(): 2.2e-14%2C 29.85 38d in 201 aa gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=YE0703 YE0704 YE0704 YE0704 817425 819674 + putative siderophore Similar to many siderophores including: Pseudomonas aeruginosa ferric enterobactin receptor precursor PfeA or Pa2688 SWALL:PFEA_PSEAE (SWALL:Q05098) (746 aa) fasta scores: E(): 1.7e-198%2C 68.07 38d in 708 aa and Escherichia coli ferrienterobactin receptor precursor FepA or fep or FeuB or b0584 SWALL:FEPA_ECOLI (SWALL:P05825) (746 aa) fasta scores: E(): 1.4e-194%2C 65.88 38d in 727 aa gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=YE0704 YE0705 YE0705 acnB acnB 820247 822844 + aconitate hydratase 2 gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=YE0705 YE0706 YE0706 YE0706 823034 823396 + conserved hypothetical protein gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=YE0706 YE0707 YE0707 yddG yddG 823440 824327 - putative membrane protein gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=YE0707 YE0708 YE0708 YE0708 824685 825149 + hypothetical protein Weakly similar in parts to several hemagglutinin-related proteins: Ralstonia solanacearum Rsc0887 or Rs06116 SWALL:Q8Y106 (EMBL:AL646061) (3501 aa) fasta scores: E(): 0.00012%2C 32.11 38d in 109 aa and Neisseria meningitidis hemagglutinin/hemolysin-related protein Nmb1779 SWALL:Q9JY23 (EMBL:AE002527) (1995 aa) fasta scores: E(): 0.00032%2C 35.92 38d in 103 aa gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=YE0708 YE0709 YE0709 speD speD 825271 826065 - S-adenosylmethionine decarboxylase proenzyme gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=YE0709 YE0710 YE0710 speE speE 826090 826953 - spermidine synthase gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=YE0710 YE0711 YE0711 yacC yacC 827068 827415 - putative exported protein gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=YE0711 YE0712 YE0712 yacK yacK 827646 829247 + putative exported protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=YE0712 YE0713 YE0713 hpt hpt 829362 829898 + hypoxanthine phosphoribosyltransferase gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=YE0713 YE0714 YE0714 yadF yadF 830007 830669 - putative carbonic anhydrase gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=YE0714 YE0715 YE0715 yadG yadG 830904 831830 + putative ABC transporter%2C ATP-binding protein gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=YE0715 YE0716 YE0716 yadH yadH 831827 832597 + putative ABC transporter%2C integral membrane protein gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=YE0716 YE0717 YE0717 YE0717 833072 834262 + conserved hypothetical protein gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=YE0717 YE0718 YE0718 panD panD 834502 834882 - aspartate 1-decarboxylase precursor gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=YE0718 YE0719 YE0719 panC panC 835040 835894 - pantoate--beta-alanine ligase gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=YE0719 YE0720 YE0720 panB panB 836068 836868 - 3-methyl-2-oxobutanoate hydroxymethyltransferase gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=YE0720 YE0722 YE0722 folK folK 837102 837581 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=YE0722 YE0723 YE0723 pcnB pcnB 837590 838912 - poly(A) polymerase gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=YE0723 YE0724 YE0724 yadB yadB 839209 840069 - putative glutamyl-tRNA synthetase gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=YE0724 YE0725 YE0725 dksA dksA 840279 840734 - DnaK suppressor protein homologue gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=YE0725 YE0726 YE0726 sfsA sfsA 840914 841639 - sugar fermentation stimulation protein gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=YE0726 YE0727 YE0727 ligT ligT 841669 842226 - putative 2'-5' RNA ligase gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=YE0727 YE0728 YE0728 hrpB hrpB 842483 844789 + ATP-dependent helicase gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=YE0728 YE0729 YE0729 mrcB mrcB 844897 847401 + penicillin-binding protein 1B gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=YE0729 YE0730 YE0730 fhuC fhuC 847658 848452 + ferrichrome transport ATP-binding protein FhuC gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=YE0730 YE0731 YE0731 fhuD fhuD 848599 849381 + ferrichrome-binding periplasmic protein precursor gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=YE0731 YE0732 YE0732 fhuB fhuB 849378 851375 + ferrichrome transport system permease protein FhuB gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=YE0732 YE0733 YE0733 nark nark 851651 853042 - nitrite extrusion protein Similar to members of the major facilitator superfamily of transport proteins: Escherichia coli nitrite extrusion protein 1 Nark or b1223 SWALL:NARK_ECOLI (SWALL:P10903) (463 aa) fasta scores: E(): 9.4e-115%2C61.13 38d in 458 aa and Salmonella typhi nitrite extrusion protein Sty1287 SWALL:Q8Z7G0 (EMBL:AL627269) (465 aa) fasta scores: E(): 8.2e-115%2C 61.35 38d in 458 aa gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=YE0733 YE0734 YE0734 hemL hemL 853456 854736 - glutamate-1-semialdehyde 2%2C1-aminomutase gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=YE0734 YE0735 YE0735 yadQ yadQ 855114 856436 + putative chloride channel protein gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=YE0735 YE0736 YE0736 YE0736 856554 856898 + conserved hypothetical protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=YE0736 YE0737 YE0737 yadS yadS 857611 858222 - putative membrane protein gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=YE0737 YE0738 YE0738 yadT yadT 858222 859025 - putative priplasmic metal binding protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=YE0738 YE0739 YE0739 mtnN mtnN 859085 859786 - MTA/SAH nucleosidase gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=YE0739 YE0740 YE0740 dgt dgt 859995 861512 + deoxyguanosinetriphosphate triphosphohydrolase gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=YE0740 YE0741 YE0741 gsrA gsrA 861811 863247 + global stress requirement protein GsrA gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=YE0741 YE0742 YE0742 barA barA 863360 866194 - two-component regulatory protein gene gene737 http://www.ncbi.nlm.nih.gov/gene/?term=YE0742 YE0743 YE0743 rumA rumA 866251 867582 + 23s rRNA (uracil-5-)-methyltransferase Highly similar to Escherichia coli 23s rRNA (uracil-5-)-methyltransferase RumA or b2785 SWALL:RUMA_ECOLI (SWALL:P55135) (432 aa) fasta scores: E(): 8.6e-104%2C 61.52 38d in 434 aa%2C and to Vibrio cholerae 23s rRNA (uracil-5-)-methyltransferase RumA or vc2452 SWALL:RUMA_VIBCH (SWALL:Q9KPC1) (440 aa) fasta scores: E(): 7.9e-83%2C 50.68 38d in 440 aa gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=YE0743 YE0744 YE0744 relA relA 867592 869826 + GTP pyrophosphokinase gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=YE0744 YE0745 YE0745 YE0745 870102 870944 + conserved hypothetical protein gene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=YE0745 YE0746 YE0746 pyrG pyrG 871156 872793 + CTP synthase gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=YE0746 YE0747 YE0747 eno eno 872873 874168 + enolase gene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=YE0747 YE0748 YE0748 YE0748 874288 875292 + transposase for insertion sequence element IS1328 Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.7e-131%2C 98.8 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8e-98%2C 73.78 id in 328 aa gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=YE0748 YE0749 YE0749 YE0749 875707 876336 + hypothetical protein no significant database hits gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=YE0749 YE0750 YE0750 YE0750 876504 877382 + hypothetical protein no significant database hits gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=YE0750 YE0751 YE0751 YE0751 877460 877783 + hypothetical protein no significant database hits gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=YE0751 YE0752 YE0752 sodC sodC 877988 878512 + superoxide dismutase [cu-zn] Similar to many including: Salmonella typhimurium superoxide dismutase [cu-zn] 2 precursor SodC or Stm1440 SWALL:SODC_SALTY (SWALL:O68901) (177 aa) fasta scores: E(): 1.8e-45%2C 71.59 38d in 169 aa and to Brucella melitensis superoxide dismutase [cu-zn] precursor SodC or Bmeii0581 SWALL:SODC_BRUME (SWALL:P58645) (174 aa) fasta scores: E(): 4e-36%2C 57.47 38d in 174 aa gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=YE0752 YE0753 YE0753 YE0753 878616 879287 + conserved hypothetical protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=YE0753 YE0754 YE0754 ygcM ygcM 879523 879882 - putative 6-pyruvoyl tetrahydrobiopterin synthase family protein gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=YE0754 YE0755 YE0755 cysJ cysJ 880250 882055 + sulfite reductase [NADPH] flavoprotein alpha-component gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=YE0755 YE0756 YE0756 cysI cysI 882055 883785 + sulfite reductase [NADPH] hemoprotein beta-component gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=YE0756 YE0757 YE0757 cysH cysH 883782 884516 + phosphoadenosine phosphosulfate reductase Similar to many including: Escherichia coli phosphoadenosine phosphosulfate reductase CysH or b2762 SWALL:CYSH_ECOLI (SWALL:P17854) (243 aa) fasta scores: E(): 3.4e-81%2C 78.92 38d in 242 aa%2C and to Salmonella typhi phosphoadenosine phosphosulfate reductase CysH or Sty3074 SWALL:Q8Z460 (EMBL:AL627276) (244 aa) fasta scores: E(): 2.2e-84%2C 82.3 38d in 243 aa gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=YE0757 YE0758 YE0758 YE0758 884629 885036 - conserved hypothetical protein gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=YE0758 YE0759 YE0759 YE0759 885164 885364 - conserved hypothetical protein Similar to Rhizobium meliloti hypothetical protein R02039 or Smc04441 SWALL:Q92K60 (EMBL:AL591789) (62 aa) fasta scores: E(): 0.00019%2C 36.92 38d in 65 aa gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=YE0759 YE0760 YE0760 YE0760 885551 886585 - peptidase Similar to many peptidases including: Escherichia coli alkaline phosphatase isozyme conversion protein precursor Iap or B2753 SWALL:IAP_ECOLI (SWALL:P10423) (345 aa) fasta scores: E(): 2.7e-68%2C 53.84 38d in 351 aa and to Salmonella typhimurium aminopeptidase in alkaline phosphatase isozyme conversion Iap or Stm2936 SWALL:Q8ZMF4 (EMBL:AE008834) (348 aa) fasta scores: E(): 1.1e-70%2C55.55 38d in 342 aa gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=YE0760 YE0761 YE0761 cysG cysG 886878 888296 + siroheme synthase gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=YE0761 YE0762 YE0762 cysD cysD 888307 889215 + sulfate adenylyltransferase subunit 2 gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=YE0762 YE0763 YE0763 cysN cysN 889289 890725 + sulfate adenylyltransferase subunit 1 gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=YE0763 YE0764 YE0764 cysC cysC 890811 891377 + adenylylsulfate kinase gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=YE0764 YE0766 YE0766 ygbE ygbE 891572 891889 + putative membrane protein gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=YE0766 YE0768 YE0768 YE0768 892316 892639 + conserved hypothetical protein gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=YE0768 YE0769 YE0769 ispD ispD 892757 893401 + 4-diphosphocytidyl-2C-methyl-D-erythritol synthase gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=YE0769 YE0770 YE0770 ispF ispF 893416 893904 + 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=YE0770 YE0771 YE0771 YE0771 893915 894964 + conserved hypothetical protein gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=YE0771 YE0772 YE0772 surE surE 894942 895694 + stationary-phase survival protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=YE0772 YE0773 YE0773 pcm pcm 895716 896342 + protein-L-isoaspartate O-methyltransferase gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=YE0773 YE0774 YE0774 nlpD nlpD 896518 897501 + lipoprotein gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=YE0774 YE0775 YE0775 rpoS rpoS 897556 898554 + RNA polymerase sigma factor RpoS gene gene768 http://www.ncbi.nlm.nih.gov/gene/?term=YE0775 YE0776 YE0776 mutS mutS 898643 901198 - DNA mismatch repair protein MutS gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=YE0776 YE0777 YE0777 YE0777 901357 903021 - putative inner membrane protein Similar to Aeromonas hydrophila hypothetical protein SWALL:AAM22558 (EMBL:AF343089) (571 aa) fasta scores: E(): 7.3e-35%2C 30.51 38d in 544 aa and Vibrio cholerae hypothetical protein Vc0393 SWALL:Q9KUW6 (EMBL:AE004127) (597 aa) fasta scores: E(): 2e-18%2C 30.36 id in 573 aa gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=YE0777 YE0778 YE0778 YE0778 903126 903389 - conserved hypothetical protein Note the differing N-terminus compared to the other Yersinia orthologues gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=YE0778 YE0779 YE0779 mrpA mrpA 904320 904844 + putative mannose-resistant/Proteus-like fimbrial protein gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=YE0779 YE0780 YE0780 mrfB mrfB 904929 905474 + exported minor pilin protein Similar to Escherichia coli PRS fimbrial minor pilin protein precursor PrsH SWALL:PRSH_ECOLI (SWALL:P42185) (195 aa) fasta scores: E(): 8.7e-14%2C 35.94 id in 153 aa%2C and to Photorhabdus luminescens MrfB SWALL:Q93MT5 (EMBL:AF396083) (183 aa) fasta scores: E(): 8.8e-28%2C 45.35 38d in 183 aa gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=YE0780 YE0781 YE0781 mrfC mrfC 905480 908041 + fimbrial outer membrane usher protein gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=YE0781 YE0782 YE0782 mrfD mrfD 908141 908908 + pili chaperone protein Similar to Photorhabdus luminescens mannose resistant fimbriae MrfD SWALL:Q93MT3 (EMBL:AF396083) (249 aa) fasta scores: E(): 1.3e-67%2C 69.91 38d in 246 aa%2C and to Escherichia coli chaperone protein PapD precursor papD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 6.6e-42%2C 48.1 38d in 237 aa gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=YE0782 YE0783 YE0783 mrfF mrfF 908962 909498 + exported pilin protein Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfF SWALL:Q93MT1 (EMBL:AF396083) (188 aa) fasta scores: E(): 7.3e-25%2C 49 id in 151 aa%2C and to Proteus mirabilis MrpE protein SWALL:Q51906 (EMBL:Z32686) (181 aa) fasta scores: E(): 1.4e-17%2C 39.25 38d in 135 aa gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=YE0783 YE0784 YE0784 mrfG mrfG 909498 909992 + minor pili exported protein Similar to Photorhabdus luminescens mannose resistant fimbriae protein MrfG SWALL:Q93MT0 (EMBL:AF396083) (163 aa) fasta scores: E(): 8e-25%2C 47.56 id in 164 aa%2C and to Salmonella typhimurium minor fimbrial subunit stff stff or stm0199 SWALL:O87661 (EMBL:AF093503) (158 aa) fasta scores: E(): 1.9e-24%2C 48.07 38d in 156 aa gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=YE0784 YE0785 YE0785 mrfH mrfH 910002 910547 + exported pilin protein Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfH SWALL:Q93MS9 (EMBL:AF396083) (181 aa) fasta scores: E(): 6.7e-29%2C50.84 38d in 177 aa%2C and to Serratia marcescens fimbria a protein precursor smfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 6.8e-10%2C 28.65 38d in 178 aa gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=YE0785 YE0786 YE0786 mrfJ mrfJ 910632 911459 + exported pilin protein Similar to Photorhabdus luminescens mannose resistant fimbriae protein%2C MrfJ SWALL:Q93MS8 (EMBL:AF396083) (271 aa) fasta scores: E(): 1.7e-10%2C 27.3 id in 271 aa and Proteus mirabilis MrpH protein mrpH SWALL:Q9R6Q8 (EMBL:Z32686) (275 aa) fasta scores: E(): 2.2e-12%2C 26.43 38d in 261 aa gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=YE0786 YE0787 YE0787 YE0787 911488 911667 + hypothetical protein doubtful CDS with no significant database hits gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=YE0787 YE0788 YE0788 YE0788 911785 911973 + hypothetical protein doubtful CDS with no significant database hits gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=YE0788 YE0789 YE0789 YE0789 912248 912874 + putative thiol:disulfide interchange protein Similar to Legionella pneumophila thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_LEGPN (SWALL:P50024) (204 aa) fasta scores: E(): 1.6e-05%2C 21.07 id in 204 aa and Azotobacter vinelandii thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_AZOVI (SWALL:Q44504) (214 aa) fasta scores: E(): 2.5e-05%2C 23.52 id in 136 aa gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=YE0789 YE0790 YE0790 YE0790 912874 913830 + hypothetical protein doubtful CDS with no significant database hits gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=YE0790 YE0791 YE0791 YE0791 913856 916006 + ABC transporter%2C ATP-binding component Similar to Escherichia coli MtfB SWALL:Q46973 (EMBL:U47048) (707 aa) fasta scores: E(): 6.5e-39%2C 27.75 id in 717 aa and to Xylella fastidiosa colicin v secretion ABC transporter ATP-binding protein xf1220 SWALL:Q9PE08 (EMBL:AE003955) (707 aa) fasta scores: E(): 9.5e-39%2C29.58 38d in 720 aa gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=YE0791 YE0792 YE0792 YE0792 916006 917181 + putative type I secretion protein Similar to many type I secretion proteins: Yersinia pestis putative HlyD family secretion protein Ypo2999 SWALL:Q8ZCI8 (EMBL:AJ414154) (401 aa) fasta scores: E(): 9.2e-43%2C 39.84 38d in 374 aa and to Agrobacterium tumefaciens efflux protein atu5177 or agr_pat_244 SWALL:Q8UKE5 (EMBL:AE008940) (397 aa) fasta scores: E(): 6.9e-37%2C 39.58 38d in 336 aa gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=YE0792 YE0793 YE0793 YE0793 917171 919147 + ABC transporter%2C ATP-binding component Similar to many ABC-family membrane transport proteins including: Escherichia coli macrolide-specific ABC-type efflux carrier MacB or b0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 4.3e-99%2C 47.61 id in 649 aa and to Agrobacterium tumefaciens ABC transporter%2C nucleotide binding/ATPase protein Atu5178 or agr_pat_247 SWALL:Q8UKE4 (EMBL:AE008940) (648 aa) fasta scores: E(): 7.1e-100%2C 48.53 38d in 647 aa gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=YE0793 YE0794 YE0794 YE0794 919144 920550 + putative outer-membrane efflux lipoprotein Similar to many putative lipoproteins including: Haemophilus influenzae hypothetical protein Hi1462 SWALL:YE62_HAEIN (SWALL:P45217) (454 aa) fasta scores: E(): 7.8e-34%2C 28.7 38d in 446 aa%2C Escherichia coli probable outer membrane lipoprotein CusC precursor or ibeb or b0572 SWALL:CUSC_ECOLI (SWALL:P77211) (457 aa) fasta scores: E(): 1.3e-31%2C 29.56 38d in 460 aa%2C and to Pseudomonas aeruginosa outer membrane protein OprJ precursor or pa4597 SWALL:OPRJ_PSEAE (SWALL:Q51397) (479 aa) fasta scores: E(): 1.7e-21%2C 25.47 38d in 475 aa gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=YE0794 YE0795 YE0795 YE0795 920547 921797 + putative acyl-carrier-protein Similar to many including: Synechocystis sp. 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or sll1069 SWALL:FABF_SYNY3 (SWALL:P73283) (416 aa) fasta scores: E(): 5.9e-48%2C 36.53 38d in 416 aa%2C and to Anabaena sp. 3-oxoacyl-[acyl-carrier-protein] synthase beta chain Alr3343 SWALL:Q8YRV0 (EMBL:AP003592) (416 aa) fasta scores: E(): 6.7e-49%2C 36.53 38d in 416 aa gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=YE0795 YE0796 YE0796 YE0796 921908 922615 + hypothetical protein no significant database hits gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=YE0796 YE0797 YE0797 YE0797 922629 922877 + hypothetical protein Weakly similar to Streptomyces coelicolor putative acyl carrier protein Sco1267 or 2scg18.14C SWALL:Q9K3H3 (EMBL:AL390188) (85 aa) fasta scores: E(): 0.38%2C 29.11 38d in 79 aa gene gene790 http://www.ncbi.nlm.nih.gov/gene/?term=YE0797 YE0798 YE0798 YE0798 922897 923616 + putative acyl-carrier-protein Similar to to many including: Chlamydia pneumoniae 3-oxoacyl-[acyl-carrier protein] reductase FabG or cpn0296 or cp0462 SWALL:FABG_CHLPN (SWALL:Q9Z8P2) (248 aa) fasta scores: E(): 1.5e-28%2C 41 38d in 239 aa and to Streptomyces avermitilis 3-oxoacyl- SWALL:Q93HC0 (EMBL:AB070946) (313 aa) fasta scores: E(): 6.7e-29%2C 39.66 38d in 237 aa gene gene791 http://www.ncbi.nlm.nih.gov/gene/?term=YE0798 YE0799 YE0799 YE0799 923769 924440 - putative aminotransferase (fragment) Similar to the phoshphate-binding C-termini domain of many proposed histidinol-phosphate aminotransferases including: Ralstonia solanacearum histidinol-phosphate aminotransferase 2 HisC2 or rsc0905 or rs04510 SWALL:Q8Y0Y8 (EMBL:AL646061) (374 aa) fasta scores: E(): 8.9e-14%2C 34.94 38d in 186 aa%2C and to Methylobacillus flagellatum histidinol-phosphate aminotransferase HisC or HisH SWALL:HIS8_METFL (SWALL:O07131) (368 aa) fasta scores: E(): 4.1e-11%2C 30.05 38d in 183 aa pseudogene gene792 http://www.ncbi.nlm.nih.gov/gene/?term=YE0799 YE0800 YE0800 dsdA dsdA 925174 926505 + D-serine dehydratase Similar to Escherichia coli D-serine dehydratase DsdA or B2366 SWALL:SDHD_ECOLI (SWALL:P00926) (442 aa) fasta scores: E(): 2e-132%2C 75.33 38d in 442 aa and to Escherichia coli O157:H7 D-serine dehydratase DsdA or z3628 or ecs3245 SWALL:Q8XCK5 (EMBL:AE005467) (442 aa) fasta scores: E(): 2.4e-133%2C 76.01 38d in 442 aa gene gene793 http://www.ncbi.nlm.nih.gov/gene/?term=YE0800 YE0801 YE0801 YE0801 926771 927628 + ABC transporter%2C solute-binding component Similar to Ralstonia solanacearum probable amino-acid-binding periplasmic Rsp1575 or rs02131 SWALL:Q8XPR3 (EMBL:AL646085) (283 aa) fasta scores: E(): 6.9e-26%2C 36.79 38d in 250 aa%2C and to Archaeoglobus fulgidus glutamine ABC transporter%2C periplasmic glutamine-binding protein Af0231 SWALL:O30008 (EMBL:AE001090) (264 aa) fasta scores: E(): 1.8e-15%2C28.88 38d in 277 aa gene gene794 http://www.ncbi.nlm.nih.gov/gene/?term=YE0801 YE0802 YE0802 YE0802 927640 928299 + ABC transporter%2C inner-membrane component Similar to Bacillus halodurans ABC transporter Bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 7.2e-24%2C 37.26 38d in 212 aa and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr1028 SWALL:Q9RVK0 (EMBL:AE001954) (216 aa) fasta scores: E(): 2.3e-23%2C 36.32 38d in 212 aa gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=YE0802 YE0803 YE0803 YE0803 928296 928934 + ABC transporter%2C inner-membrane component Similar to Bacillus subtilis probable amino-acid ABC transporter permease protein YckA SWALL:YCKA_BACSU (SWALL:P42399) (226 aa) fasta scores: E(): 5.6e-20%2C 35.46 id in 203 aa%2C and to Deinococcus radiodurans amino acid ABC transporter%2C permease protein Dr0565 SWALL:Q9RWV0 (EMBL:AE001914) (226 aa) fasta scores: E(): 1e-19%2C 38.16 id in 207 aa gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=YE0803 YE0804 YE0804 YE0804 928936 929751 + ABC transporter%2C ATP-binding component Similar to many including: Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 3.8e-38%2C 52.24 38d in 245 aa%2C and to Streptomyces coelicolor ATP-binding protein Sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL391763) (253 aa) fasta scores: E(): 2.1e-40%2C 51.4 38d in 249 aa gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=YE0804 YE0805 YE0805 YE0805 929744 931027 + putative amino acid hydrolase gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=YE0805 YE0806 YE0806 YE0806 931098 931694 + conserved hypothetical protein Similar to Caulobacter crescentus hypothetical protein Cc1828 SWALL:Q9A798 (EMBL:AE005857) (208 aa) fasta scores: E(): 1.5e-14%2C 32.3 38d in 195 aa and Deinococcus radiodurans hypothetical protein Dr0613 SWALL:Q9RWQ3 (EMBL:AE001919) (216 aa) fasta scores: E(): 1.2e-12%2C31.66 38d in 180 aa gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=YE0806 YE0807 YE0807 YE0807 931780 932370 + putative transcriptional regulatory protein Similar to Rhizobium loti hypothetical protein Mll7669 SWALL:Q985H7 (EMBL:AP003012) (205 aa) fasta scores: E(): 1.2e-26%2C 47.44 38d in 196 aa and to Rhizobium loti transcriptional regulator mlr7385 SWALL:Q986F2 (EMBL:AP003011) (227 aa) fasta scores: E(): 2.2e-11%2C34.44 38d in 180 aa gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=YE0807 YE0808 YE0808 fusA fusA 932613 934721 - elongation factor G Similar to Yersinia pestis elongation factor G fusA or Ypo0202 SWALL:EFG_YERPE (SWALL:Q8ZJB3) (702 aa) fasta scores: E(): 3.1e-178%2C 67.37 38d in 702 aa%2C and to Ralstonia solanacearum elongation factor g 1 fusa or rsc3022 or rs04735 SWALL:EFG1_RALSO (SWALL:Q8XV10) (703 aa) fasta scores: E(): 9.7e-203%2C 76.24 38d in 703 aa gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=YE0808 YE0809 YE0809 YE0809 935067 935414 + putative ArsR-family transcriptional regulatory protein Similar to many putative regulators including: Anabaena sp. transcriptional regulator Alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 6.3e-15%2C 44.66 38d in 103 aa%2C and to Rhizobium meliloti regulator nitr SWALL:Q9AH16 (EMBL:AF323118) (123 aa) fasta scores: E(): 5.5e-12%2C 45.45 38d in 99 aa gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=YE0809 YE0810 YE0810 sorE sorE 935455 936705 - L-sorbose 1-phosphate reductase Similar to Klebsiella pneumoniae L-sorbose 1-phosphate reductase SorE SWALL:SORE_KLEPN (SWALL:P37084) (410 aa) fasta scores: E(): 1.3e-116%2C 71.98 38d in 414 aa and to Escherichia coli O157:H7 putative L-sorbose-1-p-reductase Z5613 or ecs4941 SWALL:Q8X5Z6 (EMBL:AE005634) (413 aa) fasta scores: E(): 8.5e-122%2C 75 id in 416 aa gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=YE0810 YE0811 YE0811 sorM sorM 936793 937623 - sorbose-specific PTS uptake system%2C component Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IId component SorM SWALL:PTRD_KLEPN (SWALL:P37083) (274 aa) fasta scores: E(): 1.2e-89%2C 83.02 id in 271 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5614 SWALL:Q8X3K0 (EMBL:AE005634) (274 aa) fasta scores: E(): 1.2e-89%2C 83.02 38d in 271 aa gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=YE0811 YE0812 YE0812 sorA sorA 937635 938462 - sorbose-specific PTS uptake system component Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IIc component SorA SWALL:PTRC_KLEPN (SWALL:P37082) (266 aa) fasta scores: E(): 1.2e-73%2C 80.15 id in 267 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 PTS system%2C mannose-specific IIc component or PtsP or pel or b1818 or z2861 or ecs2528 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 5.8e-61%2C 63.91 id in 266 aa gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=YE0812 YE0813 YE0813 sorB sorB 938574 939065 - sorbose-specific PTS uptake system component Similar to Klebsiella pneumoniae PTS system%2CSorBose-specific IIb component SorB SWALL:PTRB_KLEPN (SWALL:P37081) (164 aa) fasta scores: E(): 1.4e-40%2C 68.55 id in 159 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5616 or ecs5001 SWALL:Q8X5Z4 (EMBL:AE005634) (164 aa) fasta scores: E(): 4.9e-41%2C69.81 38d in 159 aa gene gene806 http://www.ncbi.nlm.nih.gov/gene/?term=YE0813 YE0814 YE0814 sorF sorF 939062 939484 - sorbose-specific PTS uptake system component Similar to Klebsiella pneumoniae PTS system%2Csorbose-specific IIa component SorF SWALL:PTRA_KLEPN (SWALL:P37080) (135 aa) fasta scores: E(): 9.9e-21%2C 48.88 id in 135 aa%2C and to Escherichia coli O157:H7 putative sorbose PTS component z5617 or ecs5002 SWALL:Q8X5Z3 (EMBL:AE005634) (135 aa) fasta scores: E(): 3.4e-21%2C51.11 38d in 135 aa gene gene807 http://www.ncbi.nlm.nih.gov/gene/?term=YE0814 YE0815 YE0815 YE0815 939583 940542 - transcriptional regulatory protein gene gene808 http://www.ncbi.nlm.nih.gov/gene/?term=YE0815 YE0816 YE0816 fumA fumA 940906 942549 - fumarate hydratase%2C class I gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=YE0816 YE0818 YE0818 YE0818 943453 944427 + putative sugar ABC transporter%2C periplasmic protein gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=YE0818 YE0819 YE0819 YE0819 944506 945120 + putative lipoprotein gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=YE0819 YE0820 YE0820 YE0820 945120 946643 + putative sugar ABC transporter%2C ATP-binding protein gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=YE0820 YE0821 YE0821 rbsC rbsC 946640 947758 + putative sugar ABC transporter%2C permease protein gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=YE0821 YE0822 YE0822 YE0822 948034 948864 + putative N-terminal region of transketolase gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=YE0822 YE0823 YE0823 YE0823 948857 949801 + C-terminal region of transketolase gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=YE0823 YE0824 YE0824 YE0824 949804 951291 + glycerol kinase gene gene816 http://www.ncbi.nlm.nih.gov/gene/?term=YE0824 YE0825 YE0825 YE0825 951312 952733 + conserved hypothetical protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=YE0825 YE0826 YE0826 YE0826 952829 953773 - putative transcriptional regulatory protein gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=YE0826 YE0827 YE0827 YE0827 953931 955259 - putative membrane protein gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=YE0827 YE0828 YE0828 YE0828 955495 955983 + putative competence-damaged protein gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=YE0828 YE0829 YE0829 recA recA 956095 957159 + RecA protein gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=YE0829 YE0831 YE0831 tnpA tnpA 957461 957793 + IS1329 transposase A Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=YE0831 YE0832 YE0832 tnpB tnpB 957883 958632 + IS1329 transposase B Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 2.3e-104%2C 99.59 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac0342 SWALL:AAM35234 (EMBL:AE011660) (272 aa) fasta scores: E(): 8e-37%2C 43.72 38d in 247 aa gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=YE0832 YE0833 YE0833 recX recX 958842 959345 + putative regulatory protein gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=YE0833 YE0834 YE0834 alaS alaS 959487 962114 + alanyl-tRNA synthetase gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=YE0834 YE0835 YE0835 csrA csrA 962368 962553 + carbon storage regulator gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=YE0835 YE0836 YE0836 yqaB yqaB 963796 964362 + putative hydrolase gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=YE0836 YE0837 YE0837 yqaA yqaA 964359 964787 + putative membrane protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=YE0837 YE0838 YE0838 gshA gshA 964870 966429 + glutamate--cysteine ligase gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=YE0838 YE0839 YE0839 luxS luxS 966596 967111 + autoinducer production protein gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=YE0839 YE0840 YE0840 yfjD yfjD 967198 968478 - putative membrane protein gene gene834 http://www.ncbi.nlm.nih.gov/gene/?term=YE0840 YE0841 YE0841 corE corE 968548 969339 - putative membrane protein gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=YE0841 YE0842 YE0842 ffh ffh 969505 970866 + signal recognition particle protein gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=YE0842 YE0843 YE0843 rpsP rpsP 971219 971467 + 30S ribosomal protein S16 gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=YE0843 YE0844 YE0844 rimM rimM 971489 972037 + 16S rRNA processing protein gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=YE0844 YE0845 YE0845 trmD trmD 972076 972816 + tRNA (guanine-N1)-methyltransferase gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=YE0845 YE0846 YE0846 rplS rplS 972897 973259 + 50S ribosomal protein L19 gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=YE0846 YE0847 YE0847 ydiY ydiY 973467 974234 - putative exported protein gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=YE0847 YE0848 YE0848 YE0848 974471 975814 - putative anaerobic C4-dicarboxylate transporter Similar to Escherichia coli%2C and Escherichia coli O157:H7 anaerobic C4-dicarboxylate transporter DcuB or z5725 or ecs5105 SWALL:DCUB_ECOLI (SWALL:P14409) (446 aa) fasta scores: E(): 2.5e-99%2C 56.72 38d in 446 aa%2C and to Salmonella typhimurium Dcu family%2C anaerobic c4-dicarboxylate transporter dcub or stm4301 SWALL:Q8ZKE1 (EMBL:AE008902) (446 aa) fasta scores: E(): 1.4e-98%2C56.05 38d in 446 aa gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=YE0848 YE0849 YE0849 YE0849 976157 976873 - two-component system response regulator gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=YE0849 YE0850 YE0850 aroF aroF 977108 978187 + phospho-2-dehydro-3-deoxyheptonate aldolase%2Ctyr-sensitive gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=YE0850 YE0851 YE0851 tyrA tyrA 978190 979311 + T-protein [includes: chorismate mutase and prephenate dehydrogenase] gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=YE0851 YE0852 YE0852 pheA pheA 979671 980828 - P-protein [includes: chorismate mutase and prephenate dehydratase] gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=YE0852 YE0853 YE0853 int int 981320 982318 - integrase Similar to Bacteriophage P2 Integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 8.2e-72%2C 54.62 38d in 335 aa and to Bacteriophage 186 Integrase Int SWALL:VINT_BP186 (SWALL:P06723) (336 aa) fasta scores: E(): 1.9e-32%2C 38.57 38d in 337 aa gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=YE0853 YE0854 YE0854 CI CI 982385 982684 - bacteriophage CI repressor protein Similar to Bacteriophage P2 repressor protein repressor C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 3.5e-12%2C 42.42 38d in 99 aa and to Bacteriophage WPhi repressor protein C SWALL:Q9T1J6 (EMBL:AJ245959) (97 aa) fasta scores: E(): 2.2e-09%2C 43.01 id in 93 aa gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=YE0854 YE0855 YE0855 cox cox 982793 983149 + bacteriophage regulatory protein Similar to Bacteriophage P2 regulatory protein Cox SWALL:VCOX_BPP2 (SWALL:P07695) (91 aa) fasta scores: E(): 0.0021%2C 32.14 38d in 84 aa gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=YE0855 YE0856 YE0856 YE0856 983146 983388 + hypothetical phage-related protein no significant database hits gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=YE0856 YE0857 YE0857 YE0857 983455 983820 + hypothetical phage-related protein no significant database hits gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=YE0857 YE0857A YE0857A YE0857A 983849 984070 + hypothetical phage-related protein gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=YE0857A YE0858 YE0858 YE0858 984079 984429 + hypothetical phage-related protein Weakly similar to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 1.7e-06%2C 32.72 38d in 110 aa gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=YE0858 YE0859 YE0859 YE0859 984491 984736 + hypothetical phage-related protein no significant database hits gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=YE0859 YE0860 YE0860 YE0860 984736 985404 + putative exported phage-related protein no significant database hits gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=YE0860 YE0860A YE0860A YE0860A 985388 985768 + hypothetical phage-related protein no significant database hits gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=YE0860A YE0861 YE0861 gpA gpA 985765 988350 + phage replication protein (endonuclease) Similar to Salmonella typhi possible endonuclease Sty3668 SWALL:Q8Z365 (EMBL:AL627279) (804 aa) fasta scores: E(): 1.6e-90%2C 43.34 38d in 819 aa gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=YE0861 YE0862 YE0862 YE0862 988354 988602 + hypothetical phage-related protein no significant database hits gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=YE0862 YE0863 YE0863 YE0863 988741 989850 + hypothetical phage-related membrane protein no significant database hits gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=YE0863 YE0864 YE0864 YE0864 989892 990536 + hypothetical phage-related membrane protein no significant database hits gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=YE0864 YE0865 YE0865 YE0865 990587 990916 - hypothetical phage-related protein no significant database hits gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=YE0865 YE0866 YE0866 gpQ gpQ 990920 992017 - putative portal vertex protein Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 1.5e-27%2C 32.08 38d in 321 aa and Bacteriophage HP1 probable portal protein SWALL:VPQ_BPHP1 (SWALL:P51717) (345 aa) fasta scores: E(): 2.5e-62%2C 52.26 id in 331 aa gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=YE0866 YE0867 YE0867 gpP gpP 991698 993875 - terminase%2C ATPase subunit Similar to Bacteriophage P2 terminase%2C ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 5.1e-75%2C 39.18 38d in 592 aa and to Bacteriophage HP1 probable terminase%2C ATPase subunit SWALL:VPP_BPHP1 (SWALL:P51718) (607 aa) fasta scores: E(): 1.5e-90%2C 45.82 38d in 611 aa. Note the extended lenght of the product of this CDS and the resultant overlap with the downstream CDS gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=YE0867 YE0868 YE0868 gpO gpO 994053 995009 + probable capsid scaffolding protein Similar to Bacteriophage HP1 probable capsid scaffolding protein SWALL:VPO_BPHP1 (SWALL:P51719) (298 aa) fasta scores: E(): 1.4e-21%2C 37.18 38d in 320 aa%2C and to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 8.2e-05%2C 32.52 38d in 289 aa gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=YE0868 YE0869 YE0869 gpN gpN 995092 996258 + major capsid protein precursor Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 0.0021%2C 23.82 38d in 319 aa%2C and to Bacteriophage HP1 major capsid protein precursor SWALL:VPN_BPHP1 (SWALL:P51720) (336 aa) fasta scores: E(): 6.8e-06%2C 28.35 38d in 328 aa gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=YE0869 YE0870 YE0870 gpM gpM 996273 996926 + probable terminase%2C endonuclease subunit Similar to Bacteriophage HP1 probable terminase%2Cendonuclease subunit SWALL:VPM_BPHP1 (SWALL:P51721) (281 aa) fasta scores: E(): 3.1e-11%2C 32.48 38d in 237 aa%2C and to Bacteriophage P2 terminase%2C endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 0.0042%2C 28.31 38d in 226 aa gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=YE0870 YE0871 YE0871 gpL gpL 997060 997512 + head completion/stabilization protein Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 0.03%2C 22.14 38d in 149 aa%2C Bacteriophage SWALL:Q8W748 (EMBL:AF125163) (153 aa) fasta scores: E(): 9.3e-18%2C 35.29 38d in 153 aa%2Cand to Bacteriophage HP1 probable head completion/stabilization protein SWALL:VPL_BPHP1 (SWALL:P51722) (150 aa) fasta scores: E(): 7.6e-15%2C 35.33 id in 150 aa gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=YE0871 YE0871A YE0871A YE0871A 997509 998045 + hypothetical phage-related protein no significant database hits gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=YE0871A YE0872 YE0872 YE0872 998035 998730 + hypothetical phage-related protein Similar to Bacteriophage HP1 hypothetical protein SWALL:YO22_BPHP1 (SWALL:P51724) (227 aa) fasta scores: E(): 3.8e-09%2C 29.95 38d in 227 aa%2C and to Haemophilus phage HP2 Orf22 SWALL:Q94MZ0 (EMBL:AY027935) (231 aa) fasta scores: E(): 8.3e-06%2C 29.03 38d in 217 aa gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=YE0872 YE0873 YE0873 YE0873 998727 999905 + putative tail sheath protein Similar to Bacteriophage HP1 putative tail sheath protein SWALL:YO23_BPHP1 (SWALL:P51725) (376 aa) fasta scores: E(): 7.1e-48%2C 48.95 38d in 384 aa and to Haemophilus phage HP2 Orf23 SWALL:Q94MY9 (EMBL:AY027935) (376 aa) fasta scores: E(): 2.6e-48%2C 48.95 38d in 384 aa gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=YE0873 YE0874 YE0874 YE0874 999907 1000365 + putative tail tube protein Similar to Bacteriophage HP1 putative tail tube protein SWALL:YO24_BPHP1 (SWALL:P51726) (150 aa) fasta scores: E(): 8.9e-29%2C 54.05 38d in 148 aa%2C and to Haemophilus phage HP2 Orf24 SWALL:Q94MY8 (EMBL:AY027935) (144 aa) fasta scores: E(): 1.4e-27%2C 53.84 38d in 143 aa gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=YE0874 YE0875 YE0875 YE0875 1000369 1000689 + putative phage holin Similar to Bacteriophage P2 holin SWALL:HOLI_BPP2 (SWALL:P51773) (93 aa) fasta scores: E(): 3.3e-09%2C 46.06 id in 89 aa%2C and to Bacteriophage 186 Orf24 SWALL:O80308 (EMBL:U32222) (98 aa) fasta scores: E(): 2.1e-08%2C 43.82 id in 89 aa gene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=YE0875 YE0876 YE0876 YE0876 1000686 1001027 + hypothetical phage-related protein no significant database hits gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=YE0876 YE0877 YE0877 YE0877 1001027 1001398 + hypothetical phage-related protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=YE0877 YE0878 YE0878 YE0878 1001513 1001788 + hypothetical phage-related protein Similar to Haemophilus influenzae phage HP2 Orf26 SWALL:AAK37810 (EMBL:AY027935) (102 aa) fasta scores: E(): 1.2e-06%2C 32.22 38d in 90 aa gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=YE0878 YE0879 YE0879 YE0879 1001985 1004042 + hypothetical phage-related protein Similar to Bacteriophage HP1 hypothetical protein SWALL:YO27_BPHP1 (SWALL:P51731) (689 aa) fasta scores: E(): 6.1e-45%2C 30.47 38d in 712 aa and to Haemophilus phage HP2 Orf27 SWALL:Q94MY4 (EMBL:AY027935) (709 aa) fasta scores: E(): 1.2e-40%2C 28.88 38d in 741 aa gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=YE0879 YE0880 YE0880 YE0880 1004039 1004365 + hypothetical phage-related protein Similar to Bacteriophage HP1 hypothetical protein SWALL:YO28_BPHP1 (SWALL:P51732) (111 aa) fasta scores: E(): 7e-23%2C 63.36 38d in 101 aa and to Haemophilus phage HP2 Orf28 SWALL:Q94MY3 (EMBL:AY027935) (111 aa) fasta scores: E(): 1.9e-22%2C 62.37 38d in 101 aa gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=YE0880 YE0881 YE0881 YE0881 1004365 1005549 + hypothetical phage-related protein Similar to Haemophilus phage HP2 Orf29 SWALL:Q94MY2 (EMBL:AY027935) (382 aa) fasta scores: E(): 9.8e-76%2C50.67 38d in 373 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO29_BPHP1 (SWALL:P51733) (393 aa) fasta scores: E(): 1.2e-67%2C 49.7 38d in 340 aa gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=YE0881 YE0882 YE0882 YE0882 1005542 1006165 + hypothetical phage-related protein Similar to Bacteriophage HP1 hypothetical protein SWALL:YO30_BPHP1 (SWALL:P51734) (174 aa) fasta scores: E(): 2e-33%2C 50.86 38d in 173 aa and to Bacteriophage K139 Orf34 SWALL:Q8W734 (EMBL:AF125163) (219 aa) fasta scores: E(): 7.5e-31%2C 41.7 38d in 211 aa gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=YE0882 YE0883 YE0883 YE0883 1006175 1007719 + probable tail fiber protein Similar in the conserved N-terminal proteion of the predicted product to Bacteriophage HP1 probable tail fiber protein SWALL:VPH_BPHP1 (SWALL:P51735) (925 aa) fasta scores: E(): 6.3e-39%2C 41.4 38d in 355 aa and to Haemophilus phage HP2 Orf31 SWALL:Q94MY0 (EMBL:AY027935) (910 aa) fasta scores: E(): 3.9e-38%2C 40.17 38d in 351 aa gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=YE0883 YE0884 YE0884 YE0884 1007719 1008357 + putative tail fiber assembly protein Similar to Escherichia coli tail fiber assembly protein from lambdoid prophage E14 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 3.7e-17%2C 39.58 id in 192 aa and to Bacteriophage HK97 Gp29 SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 2.6e-18%2C38.07 38d in 197 aa gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=YE0884 YE0885 YE0885 YE0885 1008347 1009054 + hypothetical phage-related protein Similar to Haemophilus phage HP2 Orf33 SWALL:Q94MX8 (EMBL:AY027935) (255 aa) fasta scores: E(): 7.3e-13%2C28.46 38d in 260 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO33_BPHP1 (SWALL:P51737) (258 aa) fasta scores: E(): 6.9e-12%2C 27.9 38d in 258 aa gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=YE0885 YE0886 YE0886 YE0886 1009056 1009601 + hypothetical phage-related protein Similar to Haemophilus phage HP2 Orf34 SWALL:Q94MX7 (EMBL:AY027935) (186 aa) fasta scores: E(): 1.5e-20%2C40.78 38d in 179 aa and to Bacteriophage HP1 hypothetical protein SWALL:YO34_BPHP1 (SWALL:P51738) (187 aa) fasta scores: E(): 2.7e-20%2C 39.34 38d in 183 aa gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=YE0886 YE0887 YE0887 YE0887 1009598 1011295 + hypothetical phage-related protein Similar to Haemophilus phage HP2 Orf35 SWALL:Q94MX6 (EMBL:AY027935) (533 aa) fasta scores: E(): 7e-71%2C 40.7 id in 565 aa%2C and to Bacteriophage HP1 hypothetical protein SWALL:YO35_BPHP1 (SWALL:P51739) (533 aa) fasta scores: E(): 1.7e-69%2C 39.64 38d in 565 aa gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=YE0887 YE0888 YE0888 YE0888 1011378 1011797 + hypothetical phage-related membrane protein no significant database hits gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=YE0888 YE0889 YE0889 yfiA yfiA 1012660 1013022 - putative sigma 54 modulation protein gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=YE0889 YE0890 YE0890 yfiO yfiO 1013390 1014121 - putative lipoprotein gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=YE0890 YE0891 YE0891 rluD rluD 1014257 1015234 + ribosomal large subunit pseudouridine synthase D gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=YE0891 YE0892 YE0892 YE0892 1015234 1015965 + conserved hypothetical protein gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=YE0892 YE0893 YE0893 clpB clpB 1016096 1018669 + Clp ATPase gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=YE0893 YE0894 YE0894 YE0894 1025066 1026175 - putative O-methyltransferase Similar to many proposed O-methylatransferases including: Streptomyces peucetius carminomycin 4-O-methyltransferase DnrK SWALL:CM4T_STRPE (SWALL:Q06528) (355 aa) fasta scores: E(): 6.5e-07%2C 25.29 38d in 340 aa and to Escherichia coli O157:H7 putative O-methyltransferase Z4850 SWALL:Q8X3M8 (EMBL:AE005571) (352 aa) fasta scores: E(): 4.2e-94%2C 63.81 38d in 351 aa gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=YE0894 YE0895 YE0895 YE0895 1026234 1026620 - putative lipoprotein Similar to Escherichia coli O157:H7 hypothetical protein Z4849 or Ecs4324 SWALL:Q8X6P0 (EMBL:AE005571) (129 aa) fasta scores: E(): 6.5e-18%2C 45.29 38d in 117 aa gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=YE0895 YE0896 YE0896 YE0896 1027008 1027724 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein z4851 or ecs4326 SWALL:Q8X6N8 (EMBL:AE005571) (240 aa) fasta scores: E(): 1e-39%2C 45.83 38d in 240 aa gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=YE0896 YE0897 YE0897 YE0897 1027712 1028539 + putative acyltransferase Similar to Escherichia coli O157:H7 putative phospholipid biosynthesis acyltransferase Z4852 or Ecs4327 SWALL:Q8X6N6 (EMBL:AE005571) (273 aa) fasta scores: E(): 3e-50%2C 47.82 38d in 253 aa and to Neisseria meningitidis acyltransferase Nmb1698 SWALL:Q9JY82 (EMBL:AE002520) (252 aa) fasta scores: E(): 3.8e-24%2C 34.97 38d in 243 aa gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=YE0897 YE0898 YE0898 YE0898 1028539 1028796 + putative acyl carrier protein Similar to Escherichia coli O157:H7 putative acyl carrier protein Z4853 or Ecs4328 SWALL:Q8X6N5 (EMBL:AE005571) (85 aa) fasta scores: E(): 5.8e-19%2C 70.23 id in 84 aa%2C and to Neisseria meningitidis acyl carrier protein%2C putative Nmb1697 SWALL:Q9JY83 (EMBL:AE002520) (86 aa) fasta scores: E(): 2.5e-12%2C 51.76 38d in 85 aa gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=YE0898 YE0899 YE0899 YE0899 1028812 1029063 + putative acyl carrier protein Similar to Escherichia coli O157:H7 putative acyl carrier protein Z4854 or Ecs4329 SWALL:Q8X6N3 (EMBL:AE005571) (83 aa) fasta scores: E(): 6.3e-17%2C 69.23 id in 78 aa%2C and to Neisseria meningitidis acyl carrier protein nmb1696 SWALL:Q9JY84 (EMBL:AE002520) (81 aa) fasta scores: E(): 6.2e-09%2C 46.66 38d in 75 aa gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=YE0899 YE0900 YE0900 YE0900 1029077 1029667 + putative inner membrane protein Similar to Escherichia coli O157:H7 hypothetical protein Z4855 or Ecs4330 SWALL:Q8X6M5 (EMBL:AE005571) (193 aa) fasta scores: E(): 1.7e-30%2C 46.96 38d in 181 aa and to Neisseria meningitidis putative integral membrane protein Nma1954 SWALL:Q9JT66 (EMBL:AL162757) (144 aa) fasta scores: E(): 8.1e-15%2C 38.88 38d in 144 aa gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=YE0900 YE0901 YE0901 YE0901 1029667 1031028 + putative AMP-binding protein Similar to many including: Escherichia coli O157:H7 putative putative surfactin synthetase Z4856 or Ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 2.6e-64%2C 44.91 38d in 452 aa%2C Ralstonia solanacearum hypothetical protein Rs00787 SWALL:Q8XSV0 (EMBL:AL646078) (563 aa) fasta scores: E(): 3.1e-33%2C 32.86 38d in 432 aa and mycobacterium leprae O-succinylbenzoic acid-coa ligase mene or ml2257 SWALL:Q9CBB8 (EMBL:AL583924) (368 aa) fasta scores: E(): 0.00066%2C 21.63 38d in 379 aa. gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=YE0901 YE0902 YE0902 YE0902 1031025 1031372 + putative dehydratase Similar to many thioester dehydratase family proteins involved in fatty acid biosynthesis including: Escherichia coli O157:H7 Z4857 protein or ecs4332 SWALL:Q8X6M1 (EMBL:AE005571) (117 aa) fasta scores: E(): 5.8e-14%2C 51.42 38d in 105 aa%2C Escherichia coli%2CEscherichia coli O157:H7 FabZ or SefA SWALL:FABZ_ECOLI (SWALL:P21774) (151 aa) fasta scores: E(): 0.12%2C 34.34 38d in 99 aa%2C and to Yersinia enterocolitica FabZ SWALL:FABZ_YEREN (SWALL:P32205) (178 aa) fasta scores: E(): 0.47%2C 29.8 38d in 104 aa gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=YE0902 YE0903 YE0903 YE0903 1031363 1033129 + putative bifunctional glycosyl transferase/acyl transferase Similar to many including: Escherichia coli O157:H7 putative enzyme Z4858 or Ecs4333 SWALL:Q8X6L8 (EMBL:AE005571) (558 aa) fasta scores: E(): 7.3e-112%2C58.13 38d in 578 aa and to Methanosarcina acetivorans dolichyl-phosphate beta-D-mannosyltransferase Ma2169 SWALL:AAM05566 (EMBL:AE010903) (322 aa) fasta scores: E(): 3.1e-06%2C 24.16 38d in 298 aa gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=YE0903 YE0904 YE0904 YE0904 1033098 1033559 + putative thioesterase Similar to Escherichia coli O157:H7 hypothetical protein Z4859 or Ecs4334 SWALL:Q8X6L6 (EMBL:AE005571) (140 aa) fasta scores: E(): 1.2e-38%2C 66.91 38d in 136 aa and to Clostridium acetobutylicum predicted esterase Cac0271 SWALL:Q97MC7 (EMBL:AE007540) (138 aa) fasta scores: E(): 3e-07%2C 32.14 38d in 112 aa gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=YE0904 YE0905 YE0905 YE0905 1033556 1034161 + putative outer-membrane lipoprotein carrier protein Similar to several including: Escherichia coli O157:H7 hypothetical protein Z4860 or Ecs4335 SWALL:Q8X6L5 (EMBL:AE005571) (201 aa) fasta scores: E(): 1.1e-40%2C 55 id in 200 aa and to Pseudomonas syringae outer-membrane lipoproteins carrier protein LolA SWALL:LOLA_PSESY (SWALL:Q9Z3U0) (207 aa) fasta scores: E(): 0.069%2C 25 38d in 184 aa gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=YE0905 YE0906 YE0906 YE0906 1034151 1036466 + putative inner membrane protein Similar to many including: Escherichia coli O157:H7 protein Z4861 or Ecs4336 SWALL:Q8X6L3 (EMBL:AE005571) (772 aa) fasta scores: E(): 1.9e-163%2C 56.15 38d in 764 aa and to Ralstonia solanacearum probable lipoprotein transmembrane Rsp00775 SWALL:Q8XSV5 (EMBL:AL646078) (805 aa) fasta scores: E(): 1.3e-33%2C 29.31 38d in 788 aa gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=YE0906 YE0907 YE0907 YE0907 1036463 1037035 + putative lipoprotein Similar to Escherichia coli O157:H7 protein Z4862 or Ecs4337 SWALL:Q8X6L1 (EMBL:AE005571) (194 aa) fasta scores: E(): 7.3e-35%2C 55.42 38d in 175 aa gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=YE0907 YE0908 YE0908 YE0908 1037041 1038216 + putative beta-ketoacyl-[ACP] synthase Similar to several thought to be involved in fatty acid biosynthesis: Escherichia coli O157:H7 putative 3-oxoacyl-[acp] synthase Z4863 or ecs4338 SWALL:Q8X6K9 (EMBL:AE005571) (389 aa) fasta scores: E(): 4.1e-92%2C62.62 38d in 388 aa%2C and to Xylella fastidiosa beta-ketoacyl-[ACP] synthase II Xf1639 SWALL:Q9PCW5 (EMBL:AE003990) (399 aa) fasta scores: E(): 2.4e-35%2C41.55 38d in 361 aa gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=YE0908 YE0909 YE0909 YE0909 1038213 1038677 + putative dehydratase Similar to Pseudomonas aeruginosa (3r)-hydroxymyristoyl-[acyl carrier protein] dehydratase FabZ or Pa3645 SWALL:FABZ_PSEAE (SWALL:Q9HXY7) (146 aa) fasta scores: E(): 0.00031%2C 30.07 38d in 133 aa%2C and to Escherichia coli O157:H7 z4864 protein z4864 or ecs4339 SWALL:Q8X6K7 (EMBL:AE005571) (154 aa) fasta scores: E(): 1.1e-28%2C 52.81 38d in 142 aa gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=YE0909 YE0910 YE0910 fabG fabG 1038674 1039405 + 3-oxoacyl-[acyl-carrier protein] reductase Similar to Actinobacillus actinomycetemcomitans 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_ACTAC (SWALL:P70720) (242 aa) fasta scores: E(): 3e-53%2C 58.67 38d in 242 aa and Escherichia coli O157:H7 putative beta-ketoacyl-ACP reductase Z4865 or ecs4340 SWALL:Q8X5U6 (EMBL:AE005571) (243 aa) fasta scores: E(): 2.9e-72%2C 77.36 38d in 243 aa gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=YE0910 YE0911 YE0911 fabF fabF 1039402 1040649 + 3-oxoacyl-[acyl-carrier-protein] synthase II Similar to Escherichia coli%2C and Escherichia coli O157:H7 3-oxoacyl-[acyl-carrier-protein] synthase II FabF or FabJ or b1095 or z1734 or ecs1473 SWALL:FABF_ECOLI (SWALL:P39435) (412 aa) fasta scores: E(): 2.1e-45%2C 37.13 id in 412 aa and to Actinobacillus actinomycetemcomitans beta-ketoacyl-ACP synthase IV FabF SWALL:P70719 (EMBL:D88189) (414 aa) fasta scores: E(): 6.7e-91%2C 55.96 id in 411 aa gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=YE0911 YE0912 YE0912 YE0912 1040870 1041673 + putative aldo/keto reductase gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=YE0912 YE0914 YE0914 YE0914 1041897 1042799 - putative LysR-family transcriptional regulatory protein Similar to many LysR-family regulatory proteins including: Escherichia coli hypothetical transcriptional regulator YafC or b0208 SWALL:YAFC_ECOLI (SWALL:P30864) (304 aa) fasta scores: E(): 1.1e-75%2C 65.43 38d in 298 aa and Salmonella typhimurium putative transcriptional regulator YafC or stm0256 SWALL:Q8ZRM6 (EMBL:AE008706) (304 aa) fasta scores: E(): 1.7e-75%2C 65.77 38d in 298 aa gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=YE0914 YE0915 YE0915 YE0915 1042918 1044101 + MFS-family transporter (pseudogene) Similar to Salmonella typhimurium putative drug efflux protein Stm0257 SWALL:Q8ZRM5 (EMBL:AE008706) (391 aa) fasta scores: E(): 3.7e-105%2C 78.96 38d in 385 aa%2CAgrobacterium tumefaciens chloramphenicol resistance protein atu4292 or agr_l_1145 SWALL:Q8U807 (EMBL:AE009357) (431 aa) fasta scores: E(): 1.9e-75%2C 58.39 38d in 387 aa and Xanthomonas campestris MFS transporter AraJ or xcc2672 SWALL:AAM41944 (EMBL:AE012379) (402 aa) fasta scores: E(): 1.4e-54%2C 45.38 38d in 390 aa pseudogene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=YE0915 YE0916 YE0916 YE0916 1043724 1043795 + pseudogene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=YE0916 YE0917 YE0917 YE0917 1044344 1045126 + conserved hypothetical protein gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=YE0917 YE0918 YE0918 mltD mltD 1045178 1046608 - membrane-bound lytic murein transglycosylase D precursor gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=YE0918 YE0919 YE0919 gloB gloB 1046641 1047396 - putative hydroxyacylglutathione hydrolase gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=YE0919 YE0920 YE0920 YE0920 1047443 1048162 + conserved hypothetical protein gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=YE0920 YE0921 YE0921 rnhA rnhA 1048190 1048654 - ribonuclease HI gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=YE0921 YE0922 YE0922 dnaQ dnaQ 1048780 1049496 + DNA polymerase III%2C epsilon chain gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=YE0922 YE0923 YE0923 proX proX 1049954 1050958 - glycine betaine-binding periplasmic protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=YE0923 YE0924 YE0924 proW proW 1051114 1052295 - glycine betaine/L-proline transport system permease gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=YE0924 YE0925 YE0925 proV proV 1052288 1053487 - glycine betaine/L-proline transport ATP-binding protein gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=YE0925 YE0926 YE0926 nrdF nrdF 1053982 1054953 - ribonucleoside-diphosphate reductase 2 beta chain gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=YE0926 YE0927 YE0927 nrdE nrdE 1055214 1057295 - ribonucleoside-diphosphate reductase 2 alpha chain gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=YE0927 YE0928 YE0928 nrdI nrdI 1057346 1057750 - NrdI protein homologue gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=YE0928 YE0929 YE0929 nrdH nrdH 1057764 1058000 - putative glutaredoxin gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=YE0929 YE0930 YE0930 YE0930 1058283 1058714 - conserved hypothetical protein Similar to Salmonella typhimurium putative cytoplasmic protein Stm2804 SWALL:Q8ZML2 (EMBL:AE008828) (143 aa) fasta scores: E(): 3.2e-28%2C 54.22 38d in 142 aa%2Cand to Escherichia coli O157:H7 hypothetical protein Z3974 or ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: E(): 4.3e-28%2C 54.22 38d in 142 aa gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=YE0930 YE0931 YE0931 YE0931 1058810 1060264 + putative GntR-family transcriptional regulatory protein Similar to Salmonella typhimurium putative regulatory protein%2C GntR family Stm2803 SWALL:Q8ZML3 (EMBL:AE008828) (444 aa) fasta scores: E(): 1.7e-64%2C48.35 38d in 455 aa%2C and to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 2.1e-56%2C 37.07 38d in 445 aa gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=YE0931 YE0932 YE0932 YE0932 1060412 1060720 - putative inner membrane protein Similar to Yersinia pestis putative membrane protein Ypo0570 SWALL:Q8ZID5 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.2e-14%2C 53.06 38d in 98 aa and to Escherichia coli%2C and Escherichia coli O157:H7 elab protein ElaB or B2266 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 2.7e-13%2C 51.08 id in 92 aa gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=YE0932 YE0933 YE0933 asr asr 1061138 1061536 + putative acid shock protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=YE0933 YE0934 YE0934 YE0934 1061732 1062835 - hypothetical protein Similar in parts to several including: Agrobacterium tumefaciens hypothetical protein Atu0247 atu0247 or agr_c_423 SWALL:Q8UIP6 (EMBL:AE008997) (395 aa) fasta scores: E(): 1.7e-27%2C 33.61 38d in 351 aa and to Ralstonia solanacearum probable lipoprotein signal peptide Rsp1248 or rs03192 SWALL:Q8XQH7 (EMBL:AL646083) (372 aa) fasta scores: E(): 3.7e-15%2C 28.3 38d in 325 aa gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=YE0934 YE0935 YE0935 YE0935 1062927 1063934 + AraC-family transcriptional regulator Similar to several ARAC-family transcriptional regulators including: Agrobacterium tumefaciens Atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 5e-32%2C 36.98 38d in 338 aa and to Vibrio cholerae transcriptional regulator%2C arac/xyls family Vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 2.1e-14%2C 30.76 38d in 351 aa gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=YE0935 YE0936 YE0936 YE0936 1064385 1064492 + putative mfs family transport protein (pseudogene) Similar to many membrane transport proteins including: Salmonella typhimurium putative MFS family transport protein YhhS or Stm3581 SWALL:Q8ZLE4 (EMBL:AE008865) (419 aa) fasta scores: E(): 2.9e-20%2C51.49 38d in 134 aa and to Salmonella typhi putative membrane protein Sty4230 SWALL:Q8Z257 (EMBL:AL627281) (405 aa) fasta scores: E(): 3.8e-20%2C 52.67 38d in 131 aa. This CDS appears to have suffered a deletion following codon 102 pseudogene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=YE0936 YE0937 YE0937 YE0937 1064607 1064942 + conserved hypothetical protein gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=YE0937 YE0938 YE0938 yicN yicN 1064993 1065442 - putative membrane protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=YE0938 YE0939 YE0939 YE0939 1065533 1065871 - hypothetical protein Similar to the N-terminus of Halomonas elongata MobD protein SWALL:Q9K589 (EMBL:AJ243735) (73 aa) fasta scores: E(): 0.053%2C 35.59 38d in 59 aa gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=YE0939 YE0940 YE0940 cspG cspG 1066253 1066465 + cold shock-like protein cspG Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspG cspG or cspI or b0990 or z1406 or ecs1145 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 1.7e-21%2C 77.14 38d in 70 aa%2C and to Yersinia pestis%2C and Yersinia enterocolitica cold shock-like protein CspB cspB or cspG or ypo2659 or y1230 SWALL:CSPB_YERPE (SWALL:O85593) (70 aa) fasta scores: E(): 6.9e-28%2C 100 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1.3e-25%2C 91.42 id in 70 aa gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=YE0940 YE0941 YE0941 YE0941 1066554 1067513 - AraC-family transcriptional regulator Similar to many AraC-family transcriptional regulators including: Streptomyces coelicolor AraC-family transcriptional regulator AdpA or Sco2792 or Scc105.23 SWALL:Q9L062 (EMBL:AL163641) (398 aa) fasta scores: E(): 1.8e-41%2C 39.29 38d in 313 aa%2C Rhizobium loti transcriptional regulator Mll3844 SWALL:Q98FC1 (EMBL:AP003002) (332 aa) fasta scores: E(): 3e-57%2C 51.58 id in 316 aa%2C and to Caulobacter crescentus transcriptional regulator%2C AraC family cc3367 SWALL:Q9A339 (EMBL:AE005998) (324 aa) fasta scores: E(): 1.2e-52%2C 50 id in 318 aa gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=YE0941 YE0942 YE0942 YE0942 1067634 1068071 + putative rhodanese-like protein gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=YE0942 YE0943 YE0943 YE0943 1068181 1068489 + hypothetical protein gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=YE0943 YE0944 YE0944 YE0944 1068604 1069018 + hypothetical protein (fragment) stop codon introduced%2C frameshift%2C missing 130 aa due to deletion event pseudogene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=YE0944 YE0946 YE0946 YE0946 1069617 1071200 + putative solute-binding protein gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=YE0946 YE0947 YE0947 YE0947 1071200 1072168 + putative membrane protein gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=YE0947 YE0948 YE0948 YE0948 1072165 1072971 + binding-protein-dependent transport protein gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=YE0948 YE0949 YE0949 YE0949 1072971 1073777 + putative transport ATPase gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=YE0949 YE0950 YE0950 YE0950 1073770 1074435 + putative transport ATPase gene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=YE0950 YE0951 YE0951 ureA ureA 1075582 1075884 + urease gamma subunit gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=YE0951 YE0952 YE0952 ureB ureB 1075938 1076432 + urease beta subunit Previously sequenced as Yersinia enterocolitica urease beta subunit UreB or YeuB SWALL:URE2_YEREN (SWALL:P31495) (163 aa) fasta scores: E(): 1.2e-62%2C 98.77 id in 163 aa. Also similar to Yersinia pestis%2C and Yersinia pseudotuberculosis urease beta subunit UreB or Ypo2666 or Y1238 SWALL:URE2_YERPE (SWALL:P52314) (144 aa) fasta scores: E(): 1.5e-49%2C 92.14 38d in 140 aa gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=YE0952 YE0953 YE0953 ureC ureC 1076597 1078315 + urease alpha subunit gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=YE0953 YE0954 YE0954 ureE ureE 1078489 1079181 + urease accessory protein gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=YE0954 YE0955 YE0955 ureF ureF 1079203 1079889 + urease accessory protein gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=YE0955 YE0956 YE0956 ureG ureG 1080067 1080672 + urease accessory protein gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=YE0956 YE0957 YE0957 ureD ureD 1080669 1081652 + urease accessory protein Previously sequenced from several yersinias including: Yersinia pseudotuberculosis urease accessory protein UreD SWALL:URED_YERPS (SWALL:P52316) (321 aa) fasta scores: E(): 2.7e-122%2C 92.66 38d in 327 aa and Yersinia enterocolitica urease accessory protein UreD SWALL:URED_YEREN (SWALL:P42868) (325 aa) fasta scores: E(): 3.1e-124%2C 98.71 38d in 310 aa. Note the very N-terminal portion of this protein is identical to that of Y. pseudotuberculosis and Y. pestis (not shown) and differs from that previously published for Y. enterocolitica. gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=YE0957 YE0958 YE0958 YE0958 1081767 1082756 + putative urea transporter gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=YE0958 YE0959 YE0959 YE0959 1082780 1083838 + putative nickel transport protein gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=YE0959 YE0960 YE0960 YE0960 1083904 1084236 - putative exported protein gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=YE0960 YE0961 YE0961 YE0961 1084592 1085767 + putative potassium channel protein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=YE0961 YE0962 YE0962 YE0962 1085778 1086008 - hypothetical protein doubtful CDS which is similar in parts to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 6.7e-08%2C 62.5 id in 56 aa gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=YE0962 YE0963 YE0963 YE0963 1086013 1086417 - putative membrane protein gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=YE0963 YE0964 YE0964 YE0964 1086487 1086867 - putative membrane protein gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=YE0964 YE0965 YE0965 YE0965 1087056 1088090 + putative oxidoreductase Similar to many including: Escherichia coli O157:H7 hypothetical protein YghZ or z4354 or ecs3885 SWALL:YGHZ_ECO57 (SWALL:Q8X529) (346 aa) fasta scores: E(): 1.2e-109%2C 79.19 38d in 346 aa%2C Streptomyces coelicolor putative oxidoreductase Sco7594 or Sc7h9.06 SWALL:Q9EWJ0 (EMBL:AL450223) (348 aa) fasta scores: E(): 3.9e-80%2C 60.81 38d in 342 aa and to several Eukaryotic potassium channel accessory proteins e.g. Xenopus laevis voltage-gated potassium channel beta-2 subunit Kcnab2 or kvb-a or kvb2 SWALL:KVB2_XENLA (SWALL:Q9PTM5) (367 aa) fasta scores: E(): 2e-31%2C 36.87 38d in 339 aa gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=YE0965 YE0966 YE0966 YE0966 1088342 1089505 - putative exported protein Similar to many including: Escherichia coli O157:H7 putative dehydrogenase YliI or Z1063 or Ecs0917 SWALL:Q8X6U6 (EMBL:AE005265) (371 aa) fasta scores: E(): 3e-95%2C 65.31 38d in 369 aa and to Salmonella typhi putative oxidoreductase YliI or Sty0894 SWALL:Q8Z860 (EMBL:AL627268) (373 aa) fasta scores: E(): 1.9e-94%2C65.58 38d in 369 aa gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=YE0966 YE0967 YE0967 celA celA 1090080 1090397 + PTS system%2C cellobiose-specific IIB component gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=YE0967 YE0968 YE0968 celB celB 1090408 1091769 + PTS system%2C cellobiose-specific IIC component gene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=YE0968 YE0969 YE0969 YE0969 1091808 1093193 + putative glycosyl hydrolase Similar to many glycosyl hydrolases including: Salmonella typhi putative Sty4009 SWALL:Q8Z2J8 (EMBL:AL627280) (460 aa) fasta scores: E(): 2.3e-135%2C64.85 38d in 461 aa and to Caldocellum saccharolyticum beta-glucosidase A BglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 8.6e-54%2C 33.33 38d in 468 aa gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=YE0969 YE0970 YE0970 celC celC 1093222 1093569 + PTS system%2C cellobiose-specific IIA component gene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=YE0970 YE0971 YE0971 celD celD 1093621 1094451 + cel operon repressor gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=YE0971 YE0972 YE0972 YE0972 1094500 1095261 + conserved hypothetical protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=YE0972 YE0973 YE0973 YE0973 1095323 1096774 - putative membrane transport protein Similar to many sulphate permeases including: Pseudomonas sp. R9 sulfate permease SWALL:Q9RBV5 (EMBL:AF157797) (495 aa) fasta scores: E(): 6.8e-74%2C46.13 38d in 466 aa and to Bacillus halodurans sulfate permease bh0414 SWALL:Q9KFR3 (EMBL:AP001508) (486 aa) fasta scores: E(): 1e-77%2C 46.46 38d in 467 aa gene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=YE0973 YE0974 YE0974 YE0974 1096884 1097051 - prophage integrase (partial) Similar to the N-terminus of many phage integrases e.g. Escherichia coli prophage cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 3.8e-09%2C 53.57 38d in 56 aa%2C and to Yersinia pestis putative prophage integrase ypo1098 SWALL:Q8ZH15 (EMBL:AJ414146) (399 aa) fasta scores: E(): 7.2e-18%2C 87.5 38d in 56 aa. This CDS appears to be a gene remnant pseudogene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=YE0974 YE0975 YE0975 YE0975 1097520 1098374 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein Z3947 or Ecs3514 SWALL:Q8X967 (EMBL:AE005493) (283 aa) fasta scores: E(): 1.2e-65%2C 57.04 38d in 284 aa gene gene976 http://www.ncbi.nlm.nih.gov/gene/?term=YE0975 YE0975A YE0975A YE0975A 1098498 1098698 + conserved hypothetical protein Similar to many including: Escherichia coli O157:H7 putative DNA binding protein Z3946 or ecs3513 SWALL:Q8X969 (EMBL:AE005493) (68 aa) fasta scores: E(): 1.1e-17%2C 69.23 id in 65 aa%2C and to Yersinia pestis putative regulatory protein Ypo0878 SWALL:Q8ZHL3 (EMBL:AJ414145) (66 aa) fasta scores: E(): 3.7e-13%2C 54.68 38d in 64 aa gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=YE0975A YE0976 YE0976 YE0976 1098715 1099029 + hypothetical protein no significant database hits gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=YE0976 YE0977 YE0977 YE0977 1099313 1100518 + putative integrase/recombinase Similar to Escherichia coli O157:H7 putative site specific recombinase Ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 4.9e-48%2C 36.82 38d in 391 aa and to Staphylococcus aureus transposase A from transposon Tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 4.6e-05%2C 24.65 38d in 365 aa gene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=YE0977 YE0978 YE0978 YE0978 1100515 1101873 + putative integrase/recombinase Similar to Escherichia coli O157:H7 hypothetical protein Z3943 or Ecs3511 SWALL:Q8X972 (EMBL:AE005493) (441 aa) fasta scores: E(): 9.1e-41%2C 32.73 38d in 443 aa and in the C-terminus to several putative integrases: Aquifex aeolicus probable integrase/recombinase Aa09 SWALL:YZ09_AQUAE (SWALL:O66403) (315 aa) fasta scores: E(): 9.3%2C 22.89 38d in 345 aa gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=YE0978 YE0979 YE0979 YE0979 1101870 1103729 + conserved DNA-binding protein Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 2.2e-45%2C 36.66 38d in 510 aa and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 6.2e-39%2C 26.62 38d in 631 aa gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=YE0979 YE0980 YE0980 YE0980 1103765 1104169 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein Ecs3509 SWALL:Q8X5G1 (EMBL:AP002562) (132 aa) fasta scores: E(): 2.8e-17%2C 46.56 38d in 131 aa and to Pasteurella multocida hypothetical protein Pm1946 SWALL:Q9CJP8 (EMBL:AE006231) (136 aa) fasta scores: E(): 5.1e-11%2C 35.77 38d in 123 aa gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=YE0980 YE0981 YE0981 YE0981 1104276 1104698 + hypothetical protein Similar in parts to Escherichia coli O157:H7 hypothetical protein Z3940 or Ecs3508 SWALL:Q8X976 (EMBL:AE005493) (156 aa) fasta scores: E(): 0.012%2C 25.38 id in 130 aa gene gene983 http://www.ncbi.nlm.nih.gov/gene/?term=YE0981 YE0982 YE0982 YE0982 1104747 1105136 - putative lipoprotein Similar to Escherichia coli O157:H7 hypothetical protein Z3937 or Ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 6.4e-13%2C 36.79 38d in 125 aa%2C and to Buchnera aphidicola small protein A homolog precursor SmpA or Bu186 SWALL:SMPA_BUCAI (SWALL:P57283) (102 aa) fasta scores: E(): 4%2C 30.58 38d in 85 aa gene gene984 http://www.ncbi.nlm.nih.gov/gene/?term=YE0982 YE0983 YE0983 YE0983 1105166 1105807 - putative membrane protein no significant database hits gene gene985 http://www.ncbi.nlm.nih.gov/gene/?term=YE0983 YE0984 YE0984 YE0984 1106028 1107299 - repetative plasmid-related protein Similar in the N-terminus to several proteins which carry out plasmid or transposon mobility-related functions including: Bacteroides fragilis mobilization protein BmgA SWALL:Q8RM71 (EMBL:AY053505) (308 aa) fasta scores: E(): 2.7e-05%2C 24.7 38d in 251 aa%2C Bacteroides thetaiotaomicron MobA protein SWALL:Q93L54 (EMBL:AJ311171) (303 aa) fasta scores: E(): 0.00018%2C 23.88 38d in 247 aa%2C and Shigella sonnei relaxase NikB SWALL:Q9R2J7 (EMBL:AB021078) (899 aa) fasta scores: E(): 0.53%2C 22.07 38d in 222 aa. This CDS also possesses a region containing 23xAP repeats which because of its low complexity has many spurious database hits. gene gene986 http://www.ncbi.nlm.nih.gov/gene/?term=YE0984 YE0986 YE0986 YE0986 1107316 1107732 - putative ATP/GTP-binding protein Weakly similar in parts to Pasteurella multocida%2Cand Pasteurella haemolytica MbecY or MobC SWALL:Q51926 (EMBL:U57647) (101 aa) fasta scores: E(): 1.9%2C 30 38d in 100 aa gene gene987 http://www.ncbi.nlm.nih.gov/gene/?term=YE0986 YE0987 YE0987 YE0987 1108214 1108765 - putative inner membrane protein no significant database hits gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=YE0987 YE0988 YE0988 YE0988 1108807 1110333 - conserved hypothetical protein Similar to Bacillus anthracis str. A2012 hypothetical protein%2C Bxb0100 SWALL:AAM26251 (EMBL:AE011191) (541 aa) fasta scores: E(): 2.2e-22%2C28.14 38d in 533 aa and to Lactococcus phage BK5-T hypothetical 61.9 kDa protein SWALL:Q38324 (EMBL:AF176025) (536 aa) fasta scores: E(): 1.4e-16%2C 26.69 38d in 547 aa gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=YE0988 YE0989 YE0989 YE0989 1110505 1110981 + hypothetical protein no significant database hits gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=YE0989 YE0990 YE0990 YE0990 1111058 1112893 - AYP/GTP-binding protein Similar to Agrobacterium tumefaciens hypothetical protein Yme%2C from the octopine-type Ti plasmid sequence SWALL:O52294 (EMBL:AF242881) (660 aa) fasta scores: E(): 3.4e-05%2C 22.96 38d in 662 aa gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=YE0990 YE0991 YE0991 YE0991 1112875 1113297 - hypothetical protein no significant database hits gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=YE0991 YE0992 YE0992 YE0992 1113318 1114508 - hypothetical protein Similar to Vibrio cholerae hypothetical protein Vc0492 SWALL:Q9KUM3 (EMBL:AE004135) (388 aa) fasta scores: E(): 2e-07%2C 24.54 38d in 383 aa and to Agrobacterium tumefaciens Ymg%2C from the octopine-type Ti plasmid sequence SWALL:O52296 (EMBL:AF242881) (388 aa) fasta scores: E(): 0.00029%2C 20.1 38d in 383 aa gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=YE0992 YE0993 YE0993 YE0993 1114774 1116003 - putative prophage integrase gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=YE0993 YE0994 YE0994 smpB smpB 1116598 1117080 - SsrA-binding protein (small protein B) gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=YE0994 YE0995 YE0995 YE0995 1117241 1117675 + conserved hypothetical protein gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=YE0995 YE0996 YE0996 YE0996 1117719 1117952 + conserved hypothetical protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=YE0996 YE0997 YE0997 YE0997 1118105 1118455 - conserved hypothetical protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=YE0997 YE0998 YE0998 YE0998 1118560 1120239 - DNA repair protein RecN gene gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=YE0998 YE0999 YE0999 YE0999 1120308 1121189 - conserved hypothetical protein gene gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=YE0999 YE1000 YE1000 YE1000 1121313 1121891 + heat shock protein GrpE gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=YE1000 YE1001 YE1001 tnp tnp 1122080 1122538 + transposase for IS1541 Previously sequenced as Yersinia enterocolitica IS1541 element transposase Tnp SWALL:Q9X9G7 (EMBL:AJ238016) (152 aa) fasta scores: E(): 1.2e-66%2C 100 id in 152 aa. Also similar to many other IS200-like transposases e.g. Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence element IS200 SWALL:T200_SALTY (SWALL:Q57334) (152 aa) fasta scores: E(): 9.6e-64%2C 94.73 38d in 152 aa gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=YE1001 YE1002 YE1002 ung ung 1122673 1123359 - putative uracil-DNA glycosylase gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=YE1002 YE1003 YE1003 YE1003 1123711 1124094 + conserved hypothetical protein gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=YE1003 YE1004 YE1004 YE1004 1124180 1124305 - hypothetical protein doubtful CDS with no significant database hits gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=YE1004 YE1005 YE1005 yplA yplA 1124315 1125289 + phospholipase A Previously sequenced as: Yersinia enterocolitica phospholipase A YplA SWALL:O85477 (EMBL:AF067849) (324 aa) fasta scores: E(): 9.3e-114%2C 100 38d in 324 aa. Also highly similar to Yersinia pestis phospholipase A YplA or Ypo2706 SWALL:Q8ZD83 (EMBL:AJ414153) (320 aa) fasta scores: E(): 9.1e-75%2C 69.01 38d in 326 aa gene gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=YE1005 YE1006 YE1006 yplB yplB 1125378 1126034 + putative phospholipase A accessory protein gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=YE1006 YE1007 YE1007 srmB srmB 1126359 1127684 - ATP-dependent RNA helicase gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=YE1007 YE1008 YE1008 YE1008 1127808 1128563 + conserved hypothetical protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=YE1008 YE1009 YE1009 nadB nadB 1128691 1130328 - L-aspartate oxidase gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=YE1009 YE1010 YE1010 rpoE rpoE 1130517 1131092 + RNA polymerase sigma E factor gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=YE1010 YE1011 YE1011 rseA rseA 1131117 1131773 + sigma E factor negative regulatory protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=YE1011 YE1012 YE1012 rseB rseB 1131773 1132729 + sigma E factor regulatory protein gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=YE1012 YE1013 YE1013 rseC rseC 1132726 1133187 + sigma E factor regulatory protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=YE1013 YE1014 YE1014 YE1014 1133202 1134038 - putative membrane protein gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=YE1014 YE1015 YE1015 lepA lepA 1134410 1136209 + putative GTP-binding elongation factor gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=YE1015 YE1016 YE1016 lepB lepB 1136219 1137217 + signal peptidase I gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=YE1016 YE1017 YE1017 rnc rnc 1137463 1138143 + ribonuclease III gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=YE1017 YE1018 YE1018 era era 1138140 1139051 + putative GTP-binding protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=YE1018 YE1019 YE1019 recO recO 1139061 1139786 + DNA repair protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=YE1019 YE1020 YE1020 pdxJ pdxJ 1139955 1140686 + pyridoxal phosphate biosynthetic protein PdxJ gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=YE1020 YE1021 YE1021 acpS acpS 1140686 1141066 + holo-[acyl-carrier protein] synthase gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=YE1021 YE1022 YE1022 YE1022 1141105 1141263 + conserved hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 1.3e-05%2C 56.86 38d in 51 aa and Yersinia pestis putative membrane protein Ypo2495 SWALL:Q8ZDR1 (EMBL:AJ414152) (60 aa) fasta scores: E(): 0.00017%2C 57.77 id in 45 aa gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=YE1022 YE1023 YE1023 gntP gntP 1141652 1142995 + putative gluconate transporter gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=YE1023 YE1024 YE1024 fdx fdx 1143061 1143321 - putative [4Fe-4S] ferredoxin gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=YE1024 YE1025 YE1025 YE1025 1143383 1144225 - putative RpiR-family transcriptional regulatory protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=YE1025 YE1026 YE1026 YE1026 1144382 1145104 - LuxR-family transcriptional regulator Similar to many LuxR paralogues involved in quorum sensing including the previously characterised Y. enterocolitica regulator: Yersinia enterocolitica transcriptional activator protein YenR SWALL:YENR_YEREN (SWALL:P54295) (244 aa) fasta scores: E(): 5.6e-37%2C 43.15 id in 241 aa%2CSerratia sp. ATCC 39006 SmaR protein SWALL:Q9L3I8 (EMBL:AJ275980) (247 aa) fasta scores: E(): 1.4e-56%2C 58.67 38d in 242 aa%2C and to Erwinia chrysanthemi transcriptional activator protein EchR echR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 7.1e-45%2C 50.62 38d in 239 aa gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=YE1026 YE1026A YE1026A sfsB sfsB 1145384 1145656 + putative DNA-binding protein gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=YE1026A YE1027 YE1027 YE1027 1145742 1146629 + putative glucokinase protein gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=YE1027 YE1028 YE1028 yfhB yfhB 1146835 1147422 + putative membrane protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=YE1028 YE1029 YE1029 YE1029 1147451 1148500 - putative integral membrane protein Similar to Pseudomonas aeruginosa hypothetical protein Pa0736 SWALL:Q9I5J3 (EMBL:AE004508) (358 aa) fasta scores: E(): 1.2e-07%2C 26.68 38d in 341 aa. The very C-terminus of this protein is highly similar to Rickettsia conorii hypothetical protein Rc0944 SWALL:Q92H28 (EMBL:AE008647) (69 aa) fasta scores: E(): 2e-10%2C 59.42 id in 69 aa gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=YE1029 YE1030 YE1030 YE1030 1148739 1149224 + putative zinc-binding protein gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=YE1030 YE1031 YE1031 YE1031 1149388 1150848 - putative membrane protein gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=YE1031 YE1032 YE1032 purL purL 1151163 1155053 + phosphoribosylformylglycinamidine synthase gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=YE1032 YE1033 YE1033 YE1033 1155126 1155572 - putative exported protein Similar in part to Yersinia pestis hypothetical protein Ypo2919 SWALL:Q8ZCQ3 (EMBL:AJ414154) (192 aa) fasta scores: E(): 6.9e-10%2C 30.66 38d in 150 aa gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=YE1033 YE1034 YE1034 YE1034 1156224 1156562 + putative exported protein no significant database hits gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=YE1034 YE1035 YE1035 YE1035 1156693 1158144 + two-component system sensor kinase gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=YE1035 YE1036 YE1036 YE1036 1158229 1159230 + putative lipoprotein gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=YE1036 YE1037 YE1037 YE1037 1159193 1160530 + two-component system response regulator gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=YE1037 YE1038 YE1038 nadE nadE 1160791 1162413 + putative glutamine-dependent NAD gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=YE1038 YE1039 YE1039 glnB glnB 1162428 1162766 + nitrogen regulatory protein P-II gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=YE1039 YE1040 YE1040 YE1040 1162967 1164262 - putative integral membrane protein Similar to several including: Escherichia coli hypothetical protein YhfT or b3377 SWALL:YHFT_ECOLI (SWALL:P45546) (434 aa) fasta scores: E(): 2.7e-118%2C74.65 38d in 434 aa and to Bacillus halodurans hypothetical protein Bh0589 SWALL:Q9KF96 (EMBL:AP001509) (429 aa) fasta scores: E(): 3.2e-37%2C 33.86 38d in 443 aa gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=YE1040 YE1041 YE1041 YE1041 1164273 1164626 - putative inner membrane protein Highly similar to Escherichia coli hypothetical protein YhfU or b3378 SWALL:YHFU_ECOLI (SWALL:P45547) (130 aa) fasta scores: E(): 3.3e-31%2C 76.06 38d in 117 aa. Note the differing N-termini. Also similar to Bacillus halodurans hypothetical protein Bh0588 bh0588 SWALL:Q9KF97 (EMBL:AP001509) (119 aa) fasta scores: E(): 7.3e-13%2C 42.6 id in 115 aa gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=YE1041 YE1042 YE1042 YE1042 1164629 1165516 - putative hydrolase Similar to Escherichia coli phosphotriesterase homology protein Php (the function of which is unclear) or b3379 SWALL:PHP_ECOLI (SWALL:P45548) (292 aa) fasta scores: E(): 1.7e-79%2C 69.79 38d in 288 aa and to Mycobacterium tuberculosis phosphotriesterase protein Rv0230c or Mt0240 or Mtcy08d5.26C SWALL:PHP_MYCTU (SWALL:P96413) (326 aa) fasta scores: E(): 4.4e-17%2C 29.87 id in 308 aa gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=YE1042 YE1043 YE1043 YE1043 1165608 1166777 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhfX or b3381 SWALL:YHFX_ECOLI (SWALL:P45550) (387 aa) fasta scores: E(): 3e-85%2C 55.24 38d in 391 aa and to Bacillus halodurans hypothetical protein Bh0591 SWALL:Q9KF94 (EMBL:AP001509) (386 aa) fasta scores: E(): 7.9e-44%2C 36.62 38d in 385 aa gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=YE1043 YE1044 YE1044 YE1044 1166896 1167276 - conserved hypothetical protein Similar to several proteins of undefined function including: Escherichia coli hypothetical protein YhfY or b3382 SWALL:YHFY_ECOLI (SWALL:P45551) (120 aa) fasta scores: E(): 5.7e-20%2C 52.13 38d in 117 aa and to Haemophilus influenzae hypothetical protein Hi0487 SWALL:YHFY_HAEIN (SWALL:P44003) (125 aa) fasta scores: E(): 0.00014%2C 31.68 38d in 101 aa gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=YE1044 YE1045 YE1045 YE1045 1167324 1168223 - DNA-binding protein Similar to Bacillus halodurans hypothetical protein Bh0586 SWALL:Q9KF99 (EMBL:AP001509) (306 aa) fasta scores: E(): 1.6e-27%2C 33.22 38d in 307 aa and%2C in part%2C to Escherichia coli hypothetical protein YhfZ or b3383 SWALL:YHFZ_ECOLI (SWALL:P45552) (273 aa) fasta scores: E(): 6.3e-56%2C 52.74 38d in 273 aa gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=YE1045 YE1046 YE1046 hmp hmp 1168487 1169677 - flavohemoprotein gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=YE1046 YE1047 YE1047 glyA glyA 1170064 1171317 + serine hydroxymethyltransferase gene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=YE1047 YE1049 YE1049 hcaT hcaT 1171666 1172823 + putative transport permease protein gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=YE1049 YE1050 YE1050 YE1050 1172820 1174031 - putative RNA-binding protein gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=YE1050 YE1051 YE1051 YE1051 1174255 1174929 + putative exported protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=YE1051 YE1052 YE1052 YE1052 1174944 1175936 + putative membrane protein gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=YE1052 YE1054 YE1054 suhB suhB 1176132 1176938 - putative inositol monophosphatase family protein gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=YE1054 YE1055 YE1055 YE1055 1177057 1177830 + putative SpoU-family rRNA methylase gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=YE1055 YE1056 YE1056 YE1056 1177987 1178481 + conserved hypothetical protein gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=YE1056 YE1057 YE1057 iscS iscS 1178535 1179764 + putative aminotransferase gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=YE1057 YE1058 YE1058 nifU nifU 1179795 1180181 + NifU family protein gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=YE1058 YE1059 YE1059 YE1059 1180285 1180608 + conserved hypothetical protein gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=YE1059 YE1060 YE1060 hscB hscB 1180716 1181240 + chaperone protein HscB gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=YE1060 YE1061 YE1061 hscA hscA 1181573 1183423 + chaperone protein HscA gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=YE1061 YE1062 YE1062 fdx fdx 1183426 1183761 + adrenodoxin family ferredoxin gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=YE1062 YE1063 YE1063 YE1063 1183980 1184180 + conserved hypothetical protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=YE1063 YE1064 YE1064 pepB pepB 1184400 1185683 + peptidase B gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=YE1064 YE1065 YE1065 YE1065 1185919 1186743 + conserved hypothetical protein gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=YE1065 YE1066 YE1066 YE1066 1186779 1191815 + putative membrane protein gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=YE1066 YE1067 YE1067 pbpC pbpC 1191865 1194204 + penicillin-binding protein Similar to Escherichia coli penicillin-binding protein 1c PbpC or B2519 SWALL:PBPC_ECOLI (SWALL:P76577) (770 aa) fasta scores: E(): 3.4e-198%2C 62.06 38d in 767 aa and to Salmonella typhi penicillin-binding protein 1c PbpC or Sty2777 SWALL:Q8Z4N8 (EMBL:AL627275) (771 aa) fasta scores: E(): 2.3e-204%2C 64.4 38d in 767 aa gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=YE1067 YE1068 YE1068 YE1068 1194366 1196891 + putative exported protein gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=YE1068 YE1069 YE1069 ndk ndk 1197185 1197610 + nucleoside diphosphate kinase gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=YE1069 YE1070 YE1070 YE1070 1197838 1199034 + conserved hypothetical protein gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=YE1070 YE1071 YE1071 YE1071 1199229 1199978 + putative fimbrial biogenesis protein gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=YE1071 YE1072 YE1072 yfgA yfgA 1200016 1200984 + putative DNA-binding protein gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=YE1072 YE1073 YE1073 aarC aarC 1201105 1202229 + putative acetyltransferase gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=YE1073 YE1074 YE1074 hisS hisS 1202445 1203719 + histidyl-tRNA synthetase gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=YE1074 YE1075 YE1075 yfgM yfgM 1203733 1204353 + putative membrane protein gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=YE1075 YE1076 YE1076 yfgL yfgL 1204365 1205546 + putative lipoprotein gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=YE1076 YE1077 YE1077 engA engA 1205746 1207230 + putative GTP-binding protein gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=YE1077 YE1078 YE1078 YE1078 1207339 1208295 + putative membrane protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=YE1078 YE1079 YE1079 YE1079 1208324 1208548 + conserved hypothetical protein gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=YE1079 YE1080 YE1080 xseA xseA 1208595 1209971 - exodeoxyribonuclease VII large subunit gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=YE1080 YE1081 YE1081 guaB guaB 1210140 1211603 + inosine-5'-monophosphate dehydrogenase gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=YE1081 YE1082 YE1082 guaA guaA 1211788 1213365 + putative GMP synthase gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=YE1082 YE1083 YE1083 YE1083 1213613 1215490 + hypothetical protein Similar in part to Yersinia pestis hypothetical protein Ypo0466 SWALL:Q8ZIM9 (EMBL:AJ414142) (815 aa) fasta scores: E(): 0.019%2C 21.42 38d in 280 aa gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=YE1083 YE1084 YE1084 YE1084 1215721 1216287 + hypothetical protein Similar in part to Ralstonia solanacearum putative transmembrane dehydrogenase Rsc0770 or Rs05084 SWALL:Q8Y1C0 (EMBL:AL646061) (163 aa) fasta scores: E(): 1.5e-13%2C 40.26 38d in 154 aa gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=YE1084 YE1085 YE1085 YE1085 1216305 1217924 + hypothetical protein Similar to Ralstonia solanacearum putative transmembrane dehydrogenase Rsc0771 or Rs05083 SWALL:Q8Y1B9 (EMBL:AL646061) (539 aa) fasta scores: E(): 2.6e-152%2C 72.42 38d in 533 aa and to Gluconobacter oxydans solbitol dehydrogenase large subunit SldL SWALL:Q9LBK8 (EMBL:AB039821) (545 aa) fasta scores: E(): 2.3e-96%2C49.17 38d in 547 aa gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=YE1085 YE1086 YE1086 YE1086 1217941 1219194 + putative cytochrome C Similar to many including: Gluconobacter oxydans alcohol dehydrogenase cytochrome C subunit precursor AdhB SWALL:CYCA_GLUOX (SWALL:Q47945) (478 aa) fasta scores: E(): 3.5e-43%2C 37.85 38d in 428 aa and to Pantoea agglomerans cytochrome C subunit II SWALL:Q9RH53 (EMBL:AF068066) (470 aa) fasta scores: E(): 4.3e-66%2C42.25 38d in 426 aa gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=YE1086 YE1087 YE1087 YE1087 1219265 1219705 - putative acetyltransferase Similar to several including: Escherichia coli hypothetical acetyltransferase YiaC or b3550 SWALL:YIAC_ECOLI (SWALL:P37664) (146 aa) fasta scores: E(): 4.1e-05%2C 33.88 38d in 121 aa and to Vibrio cholerae hypothetical protein Vca0382 SWALL:Q9KMH2 (EMBL:AE004374) (141 aa) fasta scores: E(): 5.4e-15%2C 36.02 38d in 136 aa gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=YE1087 YE1088 YE1088 thiD thiD 1219890 1220690 + putative phosphomethylpyrimidine kinase gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=YE1088 YE1089 YE1089 YE1089 1220810 1221574 - conserved hypothetical protein gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=YE1089 YE1091 YE1091 YE1091 1221970 1222500 + putative exported protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=YE1091 YE1092 YE1092 gutQ gutQ 1222580 1223545 - conserved hypothetical protein Similar to Escherichia coli protein%2C GutQ%2C of unknown function positioned within the glucitol operon (SrlQ or b2708) SWALL:GUTQ_ECOLI (SWALL:P17115) (321 aa) fasta scores: E(): 1.7e-77%2C 67.5 38d in 320 aa%2C and to Salmonella typhi putative phosphosugar binding protein sty2960 SWALL:Q8Z4C7 (EMBL:AL627276) (321 aa) fasta scores: E(): 5.4e-77%2C 66.56 38d in 320 aa gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=YE1092 YE1093 YE1093 gutR gutR 1223538 1224308 - putative glucitol operon repressor Similar to Escherichia coli glucitol operon repressor SrlR or GutR or B2707 SWALL:SRLR_ECOLI (SWALL:P15082) (257 aa) fasta scores: E(): 3.3e-64%2C 68.35 id in 256 aa and to Erwinia amylovora repressor of srl operon SrlR SWALL:O32526 (EMBL:Y14603) (255 aa) fasta scores: E(): 1.1e-66%2C 70.98 38d in 255 aa gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=YE1093 YE1094 YE1094 gutM gutM 1224393 1224758 - glucitol operon activator protein Similar to Escherichia coli glucitol operon activator protein GutM or SrlM or b2706 SWALL:GUTM_ECOLI (SWALL:P15081) (119 aa) fasta scores: E(): 1.1e-26%2C 59.48 id in 116 aa and to Escherichia coli O157:H7 glucitol operon activator GutM or Z4013 or ecs3562 SWALL:Q8X855 (EMBL:AE005498) (119 aa) fasta scores: E(): 6.5e-27%2C59.48 38d in 116 aa gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=YE1094 YE1095 YE1095 gutD gutD 1225058 1225894 - sorbitol-6-phosphate 2-dehydrogenase Similar to Escherichia coli sorbitol-6-phosphate 2-dehydrogenase SrlD or GutD or b2705 SWALL:SRLD_ECOLI (SWALL:P05707) (259 aa) fasta scores: E(): 1.2e-78%2C 81.85 id in 259 aa%2C and to Erwinia amylovora sorbitol-6-phosphate dehydrogenase SrlD SWALL:O32524 (EMBL:Y14603) (259 aa) fasta scores: E(): 4.9e-81%2C 83.78 id in 259 aa gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=YE1095 YE1096 YE1096 gutB gutB 1225970 1226332 - pts system%2C glucitol/sorbitol-specific iia component Similar to Escherichia coli PTS system%2Cglucitol/sorbitol-specific IIa component SrlB or GutB or b2704 SWALL:PTHA_ECOLI (SWALL:P05706) (123 aa) fasta scores: E(): 1.6e-25%2C 60.16 38d in 118 aa and to Salmonella typhimurium PTS family%2Cglucitol/sorbitol-specific Slrb or Stm2834 SWALL:Q8ZMK1 (EMBL:AE008829) (120 aa) fasta scores: E(): 1.8e-26%2C62.18 38d in 119 aa gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=YE1096 YE1097 YE1097 gutE gutE 1226398 1227423 - pts system%2C glucitol/sorbitol-specific iibc component Similar to Escherichia coli pts system%2Cglucitol/sorbitol-specific IIBC component SrlE or GutE or b2703 SWALL:PTHB_ECOLI (SWALL:P56580) (319 aa) fasta scores: E(): 1.5e-59%2C 79.52 38d in 337 aa and to Erwinia amylovora PTS system%2C glucitol/sorbitol-specific IIBC component SrlE SWALL:PTHB_ERWAM (SWALL:O32522) (333 aa) fasta scores: E(): 4.8e-96%2C 78.06 38d in 342 aa gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=YE1097 YE1098 YE1098 gutA gutA 1227459 1228007 - pts system%2C glucitol/sorbitol-specific iic2 component Similar to Escherichia coli pts system%2Cglucitol/sorbitol-specific IIC2 component SrlA or GutA or sbl or b2702 SWALL:PTHC_ECOLI (SWALL:P56579) (187 aa) fasta scores: E(): 2e-65%2C 90.11 38d in 182 aa%2C and to Erwinia amylovora pts system%2C glucitol/sorbitol-specific IIC2 component SrlA SWALL:PTHC_ERWAM (SWALL:O32521) (182 aa) fasta scores: E(): 1.4e-64%2C 87.36 38d in 182 aa gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=YE1098 YE1099 YE1099 YE1099 1228386 1229276 - putative diacylglycerol kinase gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=YE1099 YE1100 YE1100 YE1100 1229759 1231162 - putative protease gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=YE1100 YE1101 YE1101 YE1101 1231365 1231801 + hypothetical protein (pseudogene) Similar to the very C-terminus of Vibrio cholerae hypothetical protein Vc0815 SWALL:Q9KTS3 (EMBL:AE004166) (456 aa) fasta scores: E(): 7.6e-12%2C 39 38d in 134 aa. This CDS appears to have suffered a significant deletion event which has also resulted in a framehift mutation pseudogene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=YE1101 YE1102 YE1102 YE1102 1231798 1232136 + putative DNA-binding protein Similar in part to Vibrio cholerae transcriptional regulator%2C putative Vc0814 SWALL:Q9KTS4 (EMBL:AE004166) (159 aa) fasta scores: E(): 9.5e-10%2C 38.83 38d in 103 aa gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=YE1102 YE1103 YE1103 YE1103 1232215 1232553 - conserved hypothetical protein gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=YE1103 YE1104 YE1104 baeR baeR 1232632 1233351 - two-component system response regulator gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=YE1104 YE1105 YE1105 baeS baeS 1233360 1234736 - two-component system%2C sensor kinase gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=YE1105 YE1106 YE1106 yegB yegB 1234753 1236132 - putative membrane protein gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=YE1106 YE1107 YE1107 yegO yegO 1236489 1239563 - AcrB/AcrD/AcrF family membrane protein gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=YE1107 YE1108 YE1108 yegN yegN 1239560 1242703 - AcrB/AcrD/AcrF family membrane protein gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=YE1108 YE1109 YE1109 yegM yegM 1242703 1244034 - putitive HlyD family secretion protein gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=YE1109 YE1110 YE1110 YE1110 1244217 1244483 - conserved hypothetical protein Similar to Vibrio cholerae hypothetical protein Vca0323 SWALL:Q9KML4 (EMBL:AE004370) (98 aa) fasta scores: E(): 1.7e-09%2C 40.44 38d in 89 aa and to Zymomonas mobilis hypothetical 10.4 kDa protein SWALL:Q9REP2 (EMBL:AF213822) (89 aa) fasta scores: E(): 6.3e-08%2C 38.71 id in 93 aa gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=YE1110 YE1111 YE1111 YE1111 1244653 1245684 - putative fimbrial subunit Similar in the C-terminus to several fimbrial proteins including: Photorhabdus luminescens PhfB SWALL:Q9AI15 (EMBL:AF288077) (337 aa) fasta scores: E(): 4.8e-07%2C 29.83 38d in 248 aa and Salmonella typhimurium fimbrial subunit BcfF or Stm0026 SWALL:Q9X608 (EMBL:AF130422) (172 aa) fasta scores: E(): 7.2e-05%2C32.41 38d in 145 aa gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=YE1111 YE1112 YE1112 YE1112 1245760 1248333 - outer membrane usher protein Similar to Salmonella typhimurium outer membrane usher protein LpfC precursor or stm3638 SWALL:LPFC_SALTY (SWALL:P43662) (842 aa) fasta scores: E(): 8.1e-133%2C47.13 38d in 855 aa and to Escherichia coli O157:H7 putative outer membrane protein YraJ or Z4500 or ecs4022 SWALL:Q8XAB2 (EMBL:AE005543) (838 aa) fasta scores: E(): 1.7e-128%2C 44.98 38d in 858 aa gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=YE1112 YE1113 YE1113 YE1113 1248296 1248976 - putative fimbrial chaperone protein Similar to Salmonella typhimurium chaperone protein LpfB precursor or Stm3639 SWALL:LPFB_SALTY (SWALL:P43661) (232 aa) fasta scores: E(): 7.8e-35%2C 46.9 38d in 226 aa and to Escherichia coli O157:H7 putative fimbrial chaperone Z4969 or Ecs4430 SWALL:Q8X5K6 (EMBL:AE005581) (232 aa) fasta scores: E(): 3.2e-36%2C 48.67 38d in 226 aa gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=YE1113 YE1114 YE1114 YE1114 1249118 1249645 - putative fimbrial protein Similar to Salmonella typhimurium long polar fimbria protein A precursor LpfA or Stm3640 SWALL:LPFA_SALTY (SWALL:P43660) (178 aa) fasta scores: E(): 1.3e-10%2C 32.43 38d in 185 aa%2C Erwinia aphidicola EafA SWALL:Q9WXD4 (EMBL:AB019396) (175 aa) fasta scores: E(): 1.9e-05%2C 29.94 38d in 177 aa%2C and to Escherichia coli FimG protein or b4319 SWALL:FIMG_ECOLI (SWALL:P08190) (167 aa) fasta scores: E(): 0.00067%2C 23.25 38d in 172 aa gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=YE1114 YE1115 YE1115 YE1115 1250466 1251818 - putative heat shock protein gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=YE1115 YE1116 YE1116 YE1116 1251912 1255316 - putative inner membrane protein Similar to Escherichia coli hypothetical protein YegE or b2067 SWALL:YEGE_ECOLI (SWALL:P38097) (1105 aa) fasta scores: E(): 1.9e-171%2C 44.72 38d in 1100 aa%2CEscherichia coli O157:H7 partial putative sensor kinase z3236 SWALL:Q8X7K1 (EMBL:AE005433) (935 aa) fasta scores: E(): 5.3e-148%2C 45.75 38d in 942 aa%2C and to Pseudomonas aeruginosa hypothetical protein Pa1181 SWALL:Q9I4F7 (EMBL:AE004548) (1120 aa) fasta scores: E(): 1e-144%2C37.71 38d in 1111 aa. Note the N-terminal region of this protein contains membrane spanning domains and the C-terminal portion contains many motifs that are commonly present within the sensor domains of signalling proteins gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=YE1116 YE1117 YE1117 mgtE mgtE 1255568 1257043 - putative divalent cation transport protein gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=YE1117 YE1118 YE1118 yfgG yfgG 1257091 1257282 - putative exported protein gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=YE1118 YE1119 YE1119 ppx ppx 1257548 1259038 - putative exopolyphosphatase gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=YE1119 YE1120 YE1120 ppk ppk 1259121 1261190 - polyphosphate kinase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=YE1120 YE1122 YE1122 trp1400B trp1400B 1261887 1262681 - IS1400 transposase B Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 6.8e-120%2C 98.98 38d in 264 aa. Also similar to many others e.g. Yersinia pestis putative transposase Ypcd1.94 SWALL:Q9RI05 (EMBL:AL117189) (269 aa) fasta scores: E(): 6.1e-38%2C 44.444 38d in 252 aa. Note the differing predicted start codons for this CDS compared with that previously published. gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=YE1122 YE1123 YE1123 trp1400A trp1400A 1262732 1263022 - IS1400 transposase A gene gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=YE1123 YE1123A YE1123A YE1123A 1263965 1264390 + putative exported protein Similar to Salmonella typhi hypothetical periplasmic protein Sty1364 SWALL:Q8Z7B8 (EMBL:AL627270) (141 aa) fasta scores: E(): 6.3e-30%2C 59.25 38d in 135 aa and in part this protein is weakly similar to Bordetella pertussis pertussis toxin subunit 3 precursor PtxC SWALL:TOX3_BORPE (SWALL:P04979) (227 aa) fasta scores: E(): 0.94%2C 22.88 38d in 118 aa gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=YE1123A YE1124 YE1124 speG speG 1264625 1265170 - spermidine acetyltransferase gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=YE1124 YE1125 YE1125 purN purN 1265306 1265944 - putative phosphoribosylglycinamide formyltransferase gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=YE1125 YE1127 YE1127 purI purI 1266236 1267279 - putative phosphoribosylaminoimidazole synthetase gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=YE1127 YE1128 YE1128 upp upp 1267515 1268141 + uracil phosphoribosyltransferase gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=YE1128 YE1129 YE1129 uraA uraA 1268234 1269523 + sugar uptake permease Similar to Escherichia coli%2C and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 3.8e-133%2C 89.62 38d in 424 aa and to Salmonella typhi uracil permease Sty2738 SWALL:Q8Z4R3 (EMBL:AL627275) (429 aa) fasta scores: E(): 6.5e-133%2C 88.65 38d in 423 aa gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=YE1129 YE1130 YE1130 YE1130 1269637 1270356 + conserved hypothetical protein gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=YE1130 YE1131 YE1131 yfgD yfgD 1270404 1270757 - putative arsenate reductase gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=YE1131 YE1132 YE1132 YE1132 1270769 1272217 - putative exported protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=YE1132 YE1133 YE1133 perM perM 1272755 1273819 + putative membrane protein gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=YE1133 YE1134 YE1134 YE1134 1274153 1275172 - putative transposase for IS1667 Similar to many including: Pseudomonas putida transposase TnpA1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 2.7e-56%2C 44.89 38d in 343 aa and to Yersinia enterocolitica IS1328 transposase Trp1328 SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 5.3e-50%2C 41.86 38d in 332 aa gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=YE1134 YE1135 YE1135 bcp bcp 1275468 1275938 - bacterioferritin comigratory protein gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=YE1135 YE1136 YE1136 gcvR gcvR 1275941 1276510 - glycine cleavage system transcriptional repressor gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=YE1136 YE1137 YE1137 dapA dapA 1276675 1277556 + dihydrodipicolinate synthase gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=YE1137 YE1138 YE1138 dapX dapX 1277573 1278631 + lipoprotein gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=YE1138 YE1140 YE1140 purC purC 1278916 1279629 + phosphoribosylaminoimidazole-succinocarboxamide synthase gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=YE1140 YE1141 YE1141 YE1141 1280059 1280823 + putative membrane protein gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=YE1141 YE1142 YE1142 yeaL yeaL 1280961 1281413 + putative membrane protein gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=YE1142 YE1143 YE1143 YE1143 1281445 1283478 + putative acetyltransferase gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=YE1143 YE1144 YE1144 YE1144 1283562 1284197 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YpfH or b2473 SWALL:YPFH_ECOLI (SWALL:P76561) (232 aa) fasta scores: E(): 2.6e-36%2C 51.7 38d in 205 aa and to Rickettsia prowazekii hypothetical protein Rp744 SWALL:Y744_RICPR (SWALL:O05958) (215 aa) fasta scores: E(): 2.4e-09%2C 29.23 38d in 195 aa gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=YE1144 YE1145 YE1145 YE1145 1284224 1284418 - putative membrane protein gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=YE1145 YE1146 YE1146 YE1146 1284453 1285157 - putative carboxypeptidase gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=YE1146 YE1147 YE1147 dapE dapE 1285154 1286281 - succinyl-diaminopimelate desuccinylase gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=YE1147 YE1148 YE1148 YE1148 1286283 1286705 - conserved hypothetical protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=YE1148 YE1149 YE1149 YE1149 1286868 1287341 - conserved hypothetical protein gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=YE1149 YE1150 YE1150 YE1150 1287801 1289015 - hypothetical protein no significant database hits gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=YE1150 YE1151 YE1151 YE1151 1289613 1292744 - multidrug efflux protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=YE1151 YE1152 YE1152 YE1152 1293154 1293432 + conserved hypothetical protein gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=YE1152 YE1153 YE1153 narP narP 1293471 1294100 - nitrate/nitrite response regulator protein NarP gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=YE1153 YE1154 YE1154 napF napF 1294605 1295108 + ferredoxin-type protein NapF gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=YE1154 YE1155 YE1155 napD napD 1295098 1295364 + conserved hypothetical protein gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=YE1155 YE1156 YE1156 napA napA 1295361 1297856 + periplasmic nitrate reductase precursor gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=YE1156 YE1157 YE1157 napB napB 1297939 1298394 + cytochrome C-type protein NapB precursor gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=YE1157 YE1158 YE1158 napC napC 1298422 1299021 + cytochrome C-type protein NapC gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=YE1158 YE1159 YE1159 YE1159 1299175 1299426 + conserved hypothetical protein Similar to seveal including: Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 3.8e-26%2C 79.51 38d in 83 aa and to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 4.5e-26%2C 79.51 38d in 83 aa%2Cand to Salmonella typhimurium putative cytoplasmic protein Stm1551 SWALL:Q8ZPF8 (EMBL:AE008767) (82 aa) fasta scores: E(): 5.8e-15%2C 55.26 38d in 76 aa gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=YE1159 YE1160 YE1160 YE1160 1299423 1299710 + conserved hypothetical protein Similar to Escherichia coli hypothetical RelE protein or b1563 SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 2.5e-16%2C 55.31 38d in 94 aa%2CEscherichia coli Orf43 protein SWALL:Q9S123 (EMBL:AB024946) (95 aa) fasta scores: E(): 2.2e-28%2C 81.05 id in 95 aa%2C and to Escherichia coli hypothetical RelE-like protein SWALL:RELX_ECOLI (SWALL:Q60228) (95 aa) fasta scores: E(): 7e-27%2C 77.89 38d in 95 aa gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=YE1160 YE1161 YE1161 YE1161 1299739 1300314 + conserved hypothetical protein gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=YE1161 YE1162 YE1162 maeB maeB 1300535 1302814 + NADP-dependent malic enzyme gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=YE1162 YE1163 YE1163 YE1163 1303231 1304250 - putative transposase for IS1667 Similar to many including: Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.3e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica IS1328 transposase Trp1328 SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 1.2e-49%2C 42.16 38d in 332 aa gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=YE1163 YE1165 YE1165 YE1165 1304987 1305673 + putative LuxR-family transcriptional regulatory protein Similar to several including: Salmonella typhimurium secretion system regulatory protein SsrB SWALL:O54305 (EMBL:Z95891) (193 aa) fasta scores: E(): 1.5e-05%2C 30.46 38d in 174 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 regulator of fimbriae protein FimZ or b0535 or z0693 or ecs0597 SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 7.1e-05%2C 27.51 id in 189 aa gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=YE1165 YE1166 YE1166 YE1166 1305680 1306582 - putative LysR-family transcriptional regulatory protein Similar to many utative transcriptional regulators including: Salmonella typhimurium LysR family YbdO or Stm0606 SWALL:Q8ZR23 (EMBL:AE008724) (300 aa) fasta scores: E(): 4.4e-12%2C 23.25 38d in 301 aa and to Salmonella typhimurium probable activator protein in leuABCD operon LeuO or Stm0115 SWALL:LEUO_SALTY (SWALL:P46924) (314 aa) fasta scores: E(): 2e-07%2C 22.42 id in 281 aa gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=YE1166 YE1167 YE1167 YE1167 1306694 1307152 - conserved hypothetical protein gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=YE1167 YE1168 YE1168 hemF hemF 1307152 1308078 - coproporphyrinogen III oxidase%2C aerobic HemF gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=YE1168 YE1169 YE1169 YE1169 1308309 1308734 + putative acetyltransferase gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=YE1169 YE1170 YE1170 YE1170 1308992 1310110 + putative integrase/recombinase protein Similar%2C at least in parts%2C to Escherichia coli shufflon-specific DNA recombinase Rci SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 4.7e-07%2C 35.71 id in 322 aa and to Ralstonia solanacearum putative integrase/recombinase protein Rsc1554 or Rs05241 SWALL:Q8XZ52 (EMBL:AL646065) (354 aa) fasta scores: E(): 1.8e-07%2C 34.21 38d in 380 aa gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=YE1170 YE1171 YE1171 YE1171 1310337 1311557 + putative maturase protein Weakly similar in parts to Pseudomonas alcaligenes putative maturase/reverse transcriptase SWALL:Q9AMP0 (EMBL:AF323437) (407 aa) fasta scores: E(): 0.00065%2C23.24 38d in 185 aa gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=YE1171 YE1172 YE1172 YE1172 1311562 1313568 + putative DNA-binding protein Weakly similar in parts to Synechocystis sp. hypothetical protein Sll1503 SWALL:P72998 (EMBL:D90902) (508 aa) fasta scores: E(): 4.5e-10%2C 26.31 38d in 323 aa gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=YE1172 YE1175 YE1175 YE1175 1314461 1315768 - conserved hypothetical protein Similar to Caulobacter crescentus hypothetical protein Cc2770 cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 1.9e-65%2C 42.55 38d in 423 aa%2C and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 7.1e-20%2C 32.62 38d in 426 aa gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=YE1175 YE1175A YE1175A YE1175A 1315768 1316175 - Cro/CI family transcriptional regulator Similar to Caulobacter crescentus transcriptional regulator%2C Cro/CI family Cc2771 SWALL:Q9A4Q9 (EMBL:AE005942) (119 aa) fasta scores: E(): 5.7e-06%2C 34.9 id in 106 aa gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=YE1175A YE1176 YE1176 YE1176 1316273 1316497 - hypothetical protein no significant database hits gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=YE1176 YE1177 YE1177 YE1177 1316984 1318384 - putative conjugal transfer protein Similar to Rhizobium sp. probable conjugal transfer protein TrbL or y4dC SWALL:TRBL_RHISN (SWALL:P55402) (391 aa) fasta scores: E(): 4.2e-16%2C 27.27 38d in 385 aa%2C and to Enterobacter aerogenes plasmid R751 conjugal transfer protein TrbL SWALL:P71187 (EMBL:U67194) (572 aa) fasta scores: E(): 9.9e-62%2C 50.46 38d in 432 aa gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=YE1177 YE1177A YE1177A YE1177A 1318398 1318577 - hypothetical protein Weakly similar to Escherichia coli entry exclusion protein B EexB or TrbK SWALL:Q03535 (EMBL:M93696) (69 aa) fasta scores: E(): 0.018%2C 34.32 38d in 67 aa gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=YE1177A YE1178 YE1178 YE1178 1318588 1319367 - putative conjugal transfer protein Similar to Rhizobium sp. probable conjugal transfer protein TrbJ or Y4dA SWALL:TRBJ_RHISN (SWALL:P55400) (267 aa) fasta scores: E(): 6.9e-06%2C 27 38d in 200 aa%2C and to Escherichia coli%2C Comamonas testosteroni TrbJ SWALL:P71185 (EMBL:U67194) (254 aa) fasta scores: E(): 6.5e-50%2C 60.87 id in 253 aa gene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=YE1178 YE1179 YE1179 YE1179 1319687 1319917 - hypothetical protein doubtful CDS with no significant database hits gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=YE1179 YE1180 YE1180 YE1180 1320077 1320742 + hypothetical protein no significant database hits gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=YE1180 YE1181 YE1181 YE1181 1320959 1321228 - conserved hypothetical protein Similar to Xylella fastidiosa hypothetical protein Xf2075 SWALL:Q9PBR5 (EMBL:AE004023) (92 aa) fasta scores: E(): 1.1e-10%2C 42.85 38d in 77 aa and to Xanthomonas axonopodis hypothetical protein Xac2429 SWALL:AAM37280 (EMBL:AE011880) (92 aa) fasta scores: E(): 1.9e-10%2C 38.63 id in 88 aa gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=YE1181 YE1182 YE1182 YE1182 1321502 1322389 - putative plasmid-related transcriptional repressor protein Similar to Escherichia coli plasmid TrfA transcriptional repressor protein SWALL:TRFA_ECOLI (SWALL:P07676) (382 aa) fasta scores: E(): 3.3e-06%2C 22.05 id in 263 aa and to Escherichia coli plasmid protein TrfA SWALL:Q52323 (EMBL:X00713) (285 aa) fasta scores: E(): 2.5e-06%2C 22.05 38d in 263 aa gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=YE1182 YE1183 YE1183 YE1183 1322394 1322774 - hypothetical protein no significant database hits gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=YE1183 YE1184 YE1184 YE1184 1322982 1323164 + putative acetyltransferase (fragment) Similar to the C-terminus of many proposed acetyltransferases including: Yersinia pestis putative acetyltransferase Ypo3031 SWALL:Q8ZCG0 (EMBL:AJ414155) (141 aa) fasta scores: E(): 1e-22%2C 100 38d in 60 aa%2CSalmonella typhimurium putative acetyltransferase Stm2449 SWALL:Q8ZN84 (EMBL:AE008810) (178 aa) fasta scores: E(): 3.8e-16%2C 69.69 38d in 66 aa and Escherichia coli hypothetical protein YpeA or b2434 SWALL:YPEA_ECOLI (SWALL:P76539) (141 aa) fasta scores: E(): 6.2e-15%2C 68.18 id in 66 aa. Note this CDS remnant borders a possible integrated plasmid and is likely to have been formed following a partial duplication of CDS YE1169 which lies at the other side of the integration site pseudogene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=YE1184 YE1185 YE1185 ygiW ygiW 1323318 1323731 - putative exported protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=YE1185 YE1186 YE1186 yfeY yfeY 1324114 1324725 + putative lipoprotein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=YE1186 YE1187 YE1187 YE1187 1324901 1325806 + conserved hypothetical protein gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=YE1187 YE1188 YE1188 nanA nanA 1325879 1326769 - probable N-acetylneuraminate lyase gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=YE1188 YE1189 YE1189 YE1189 1326851 1327486 - conserved hypothetical protein gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=YE1189 YE1190 YE1190 YE1190 1327796 1328710 + putative sugar kinase gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=YE1190 YE1191 YE1191 YE1191 1328792 1329202 + conserved hypothetical protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=YE1191 YE1192 YE1192 YE1192 1329398 1330276 + putative rpiR-family transcriptional regulatory protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=YE1192 YE1193 YE1193 nanT nanT 1330685 1332157 + putative sugar transporter gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=YE1193 YE1194 YE1194 cysP cysP 1332509 1333444 + thiosulfate-binding protein gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=YE1194 YE1195 YE1195 cysT cysT 1333444 1334280 + sulfate transport system permease protein CysT gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=YE1195 YE1196 YE1196 cysW cysW 1334280 1335155 + sulfate transport system permease protein CysW gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=YE1196 YE1197 YE1197 cysA cysA 1335145 1336236 + sulfate transport ATP-binding protein gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=YE1197 YE1198 YE1198 cysM cysM 1336464 1337291 + cysteine synthase B gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=YE1198 YE1199 YE1199 YE1199 1337339 1339294 - putative ABC transporter%2C ATP-binding protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=YE1199 YE1200 YE1200 YE1200 1339325 1340533 - putative HlyD family secretion protein gene gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=YE1200 YE1201 YE1201 YE1201 1340722 1341405 + putative two-component system response regulator gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=YE1201 YE1202 YE1202 YE1202 1341431 1342798 + putative two-component system sensor kinase gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=YE1202 YE1203 YE1203 YE1203 1342839 1343636 - putative transposase for insertion element IS1669 Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=YE1203 YE1204 YE1204 YE1204 1343654 1343968 - IS1669 hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 2e-30%2C 86.53 38d in 104 aa%2C and in part to Salmonella typhimurium putative cytoplasmic protein stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=YE1204 YE1205 YE1205 crr crr 1344156 1344665 - PTS system%2C glucose-specific IIA component gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=YE1205 YE1206 YE1206 ptsI ptsI 1344714 1346441 - PTS sytem%2C enzyme I component gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=YE1206 YE1207 YE1207 ptsH ptsH 1346489 1346746 - PTS system%2C phosphocarrier protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=YE1207 YE1208 YE1208 cysK cysK 1347198 1348166 - cysteine synthase A gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=YE1208 YE1209 YE1209 cysZ cysZ 1348362 1349033 - putative membrane protein gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=YE1209 YE1210 YE1210 zipA zipA 1349310 1350332 + putative cell division protein gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=YE1210 YE1211 YE1211 ligA ligA 1350408 1352426 + DNA ligase gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=YE1211 YE1212 YE1212 YE1212 1352441 1352659 + conserved hypothetical protein gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=YE1212 YE1213 YE1213 YE1213 1352849 1353190 - putative exported protein gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=YE1213 YE1214 YE1214 YE1214 1353347 1353907 - conserved hypothetical protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=YE1214 YE1215 YE1215 gltX gltX 1354417 1355832 - glutamyl-tRNA synthetase gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=YE1215 YE1217 YE1217 nupC nupC 1357395 1358579 - nucleoside permease gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=YE1217 YE1219 YE1219 mntH mntH 1358978 1360207 + manganese transport protein MntH gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=YE1219 YE1220 YE1220 YE1220 1360258 1360686 - putative exported protein gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=YE1220 YE1221 YE1221 YE1221 1360857 1361846 - putative ion channel protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=YE1221 YE1222 YE1222 ipdC ipdC 1362066 1363730 + indole-3-pyruvate decarboxylase Similar to Enterobacter cloacae indole-3-pyruvate decarboxylase involved in the production of the plant-like hormone indole-3-acetaldehyde (IAAld) IpdC SWALL:DCIP_ENTCL (SWALL:P23234) (552 aa) fasta scores: E(): 7.9e-113%2C 53.51 38d in 555 aa%2C and to Salmonella typhimurium putative indole-3-pyruvate decarboxylase IpD or Stm2405 SWALL:Q93IM7 (EMBL:AJ401270) (550 aa) fasta scores: E(): 3.2e-118%2C 56.18 38d in 550 aa gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=YE1222 YE1223 YE1223 YE1223 1363702 1364589 - putative lysR-family transcriptional regulatory protein gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=YE1223 YE1224 YE1224 YE1224 1364691 1365167 + putative membrane protein gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=YE1224 YE1225 YE1225 glk glk 1365353 1366324 + glucokinase gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=YE1225 YE1226 YE1226 YE1226 1366581 1367825 - putative membrane transport protein Similar to many including: Escherichia coli hypothetical protein YhjX or b3547 SWALL:YHJX_ECOLI (SWALL:P37662) (402 aa) fasta scores: E(): 8.8e-65%2C 44.24 id in 391 aa%2C and to Salmonella typhi putative transmembrane transport protein Sty2820 SWALL:Q8Z4K9 (EMBL:AL627275) (398 aa) fasta scores: E(): 2.9e-32%2C29.56 38d in 389 aa gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=YE1226 YE1227 YE1227 YE1227 1368049 1368789 - putative two-component system response-regulator Similar to many two-component system response-regulatory proteins including: Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR or Pa5261 SWALL:ALGR_PSEAE (SWALL:P26275) (248 aa) fasta scores: E(): 3.7e-11%2C 28.34 38d in 254 aa%2CEscherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YpdB or b2381 SWALL:YPDB_ECOLI (SWALL:P77742) (244 aa) fasta scores: E(): 6e-71%2C 74.19 id in 248 aa%2C and Bacillus subtilis autolysin response regulator LytT SWALL:P94514 (EMBL:Z75208) (241 aa) fasta scores: E(): 1.3e-25%2C 33.6 38d in 247 aa gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=YE1227 YE1228 YE1228 YE1228 1368793 1370493 - two-component system histidine kinase Similar to many two-component system histidine kinases including: Fusobacterium nucleatum autolysin sensor kinase fn0220 SWALL:AAL94426 (EMBL:AE010534) (541 aa) fasta scores: E(): 3.2e-77%2C 42.08 38d in 537 aa%2C and to Staphylococcus aureus two-component sensor histidine kinase lyts or sav0260 or sa0250 or mw0236 SWALL:Q99WW3 (EMBL:AP003358) (584 aa) fasta scores: E(): 8.5e-46%2C30.01 38d in 573 aa gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=YE1228 YE1229 YE1229 YE1229 1370664 1371911 - conserved hypothetical protein gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=YE1229 YE1230 YE1230 YE1230 1372113 1372685 + putative acetyltransferase Similar to many including: Streptomyces coelicolor putative acetyltransferase Sco2876 or sce6.13 SWALL:Q9KZS5 (EMBL:AL353832) (208 aa) fasta scores: E(): 3.1e-11%2C32.04 38d in 181 aa and Bacillus halodurans ribosomal-protein-alanine N-acetyltransferase Bh0699 SWALL:Q9KF00 (EMBL:AP001509) (190 aa) fasta scores: E(): 5.6e-10%2C 29.89 38d in 184 aa gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=YE1230 YE1231 YE1231 YE1231 1372817 1374052 + putative aminotransferase gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=YE1231 YE1232 YE1232 YE1232 1374220 1374744 + putative B-type cytochrome gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=YE1232 YE1233 YE1233 YE1233 1375159 1375590 - conserved hypothetical protein Highly similar to Yersinia pestis hypothetical protein Ypo2973 SWALL:Q8ZCL0 (EMBL:AJ414154) (143 aa) fasta scores: E(): 1e-41%2C 82.39 38d in 142 aa. Also similar to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdcQ or b1438 or z2281 or ecs2042 SWALL:YDCQ_ECOLI (SWALL:P76107) (145 aa) fasta scores: E(): 5.1e-06%2C 26.86 38d in 134 aa gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=YE1233 YE1234 YE1234 YE1234 1376102 1376773 + putative lipoprotein gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=YE1234 YE1235 YE1235 YE1235 1376803 1377159 + putative lipoprotein gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=YE1235 YE1236 YE1236 YE1236 1377156 1377812 + putative lipoprotein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=YE1236 YE1236A YE1236A YE1236A 1378015 1378218 + 6-phospho-beta-glucosidase (fragment) Similar to the very C-termini of several including: Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 5.6e-20%2C 78.46 38d in 65 aa and to Klebsiella oxytoca phospho-cellobiase CasB SWALL:CASB_KLEOX (SWALL:Q48409) (464 aa) fasta scores: E(): 1.2e-18%2C 71.21 38d in 66 aa pseudogene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=YE1236A YE1237 YE1237 YE1237 1378318 1378848 + putative membrane protein gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=YE1237 YE1238 YE1238 yfuD yfuD 1378874 1379512 - putative membrane transport protein Similar to Yersinia enterocolitica hypothetical protein YfuD SWALL:Q9RIF0 (EMBL:Z47200) (212 aa) fasta scores: E(): 5.7e-78%2C 100 38d in 212 aa and to Escherichia coli%2C and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 3.4e-15%2C 26.86 id in 201 aa gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=YE1238 YE1239 YE1239 yfuC yfuC 1379635 1380684 - iron(III)-transport ATP-binding protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=YE1239 YE1240 YE1240 yfuB yfuB 1380681 1382267 - iron(III)-transport system permease gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=YE1240 YE1241 YE1241 yfuA yfuA 1382354 1383370 - iron(III)-binding periplasmic protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=YE1241 YE1242 YE1242 mltB mltB 1383664 1384758 + putative membrane-bound lytic murein transglycosylase B gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=YE1242 YE1243 YE1243 YE1243 1384987 1386327 - putative eamino acid permease Similar to Pseudomonas aeruginosa probable amino acid permease Pa3597 SWALL:Q9HY29 (EMBL:AE004780) (440 aa) fasta scores: E(): 1.8e-63%2C 40.46 38d in 435 aa and to Escherichia coli hypothetical transport protein YcjJ or b1296 SWALL:YCJJ_ECOLI (SWALL:P76037) (461 aa) fasta scores: E(): 3e-59%2C 38.32 38d in 441 aa gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=YE1243 YE1244 YE1244 YE1244 1386752 1388482 - conserved hypothetical protein Similar to many including: Rhizobium meliloti hypothetical protein Ra0050 or Sma0101 SWALL:Q930Z4 (EMBL:AE007199) (541 aa) fasta scores: E(): 1e-15%2C 30.29 id in 571 aa and to Erwinia carotovora exoenzymes regulatory protein AepA precursor SWALL:AEPA_ERWCA (SWALL:Q06555) (465 aa) fasta scores: E(): 1.3e-12%2C 23.89 id in 452 aa gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=YE1244 YE1245 YE1245 YE1245 1388642 1389232 - putative TetR-family regulatory protein Similar to many proposed regulatory proteins including: Salmonella typhi putative regulatory protein Sty1490 SWALL:Q8Z730 (EMBL:AL627270) (192 aa) fasta scores: E(): 1.2e-26%2C 44.61 38d in 195 aa%2C and to Streptomyces coelicolor putative transcriptional regulator Sco6775 or Sc6a5.24C SWALL:Q9X7X0 (EMBL:AL049485) (206 aa) fasta scores: E(): 1.4e-05%2C 30.58 38d in 170 aa gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=YE1245 YE1246 YE1246 YE1246 1389366 1390859 + MFS-family membrane transport protein Similar to Salmonella typhimurium methyl viologen resistance protein SmvA or Stm1574 SWALL:SMVA_SALTY (SWALL:P37594) (495 aa) fasta scores: E(): 3.6e-100%2C57.98 38d in 495 aa and to Pseudomonas aeruginosa probable MFS transporter Pa1282 SWALL:Q9I462 (EMBL:AE004557) (501 aa) fasta scores: E(): 4.2e-62%2C 42.76 38d in 484 aa gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=YE1246 YE1247 YE1247 YE1247 1391203 1392348 + ABC transporter%2C membrane permease Similar to many membrane transport proteins including: Pseudomonas aeruginosa probable permease of ABC transporter Pa3211 SWALL:Q9HZ29 (EMBL:AE004744) (381 aa) fasta scores: E(): 1.5e-94%2C 69.55 38d in 381 aa and to Brucella melitensis toluene tolerance protein Ttg2b or Bmei0965 SWALL:Q8YH39 (EMBL:AE009537) (390 aa) fasta scores: E(): 5.2e-37%2C 34.84 38d in 376 aa gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=YE1247 YE1248 YE1248 YE1248 1392345 1393148 + ABC transporter%2C ATP-binding component Similar to many membrane transport proteins including:Pseudomonas aeruginosa probable ATP-binding component of ABC transporter Pa3212 SWALL:Q9HZ28 (EMBL:AE004744) (264 aa) fasta scores: E(): 3.5e-67%2C80.69 38d in 259 aa and Rhizobium meliloti putative ABC transporter ATP-binding protein R01832 or Smc00175 SWALL:Q92PD6 (EMBL:AL591788) (269 aa) fasta scores: E(): 2.5e-42%2C 53.62 38d in 248 aa gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=YE1248 YE1249 YE1249 YE1249 1393149 1394090 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa3213 SWALL:Q9HZ27 (EMBL:AE004744) (312 aa) fasta scores: E(): 2.3e-64%2C 60.89 38d in 312 aa and to Caulobacter crescentus ABC transporter%2C periplasmic substrate-binding protein%2C putative Cc2320 SWALL:Q9A5X7 (EMBL:AE005902) (312 aa) fasta scores: E(): 7.4e-24%2C31.73 38d in 312 aa gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=YE1249 YE1250 YE1250 YE1250 1394087 1394722 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa3214 SWALL:Q9HZ26 (EMBL:AE004744) (214 aa) fasta scores: E(): 1.4e-35%2C 53 38d in 200 aa%2C Xylella fastidiosa hypothetical protein Xf1300 SWALL:Q9PDS9 (EMBL:AE003963) (213 aa) fasta scores: E(): 4.8e-14%2C 32.29 38d in 192 aa and Ralstonia solanacearum probable lipoprotein Rsc0316 or Rs03283 SWALL:Q8Y2L9 (EMBL:AL646058) (211 aa) fasta scores: E(): 9.6e-05%2C 28.07 38d in 203 aa gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=YE1250 YE1251 YE1251 YE1251 1394764 1395558 - putative regulatory protein gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=YE1251 YE1252 YE1252 YE1252 1395649 1396575 - putative exported protein gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=YE1252 YE1253 YE1253 YE1253 1396957 1397511 + putative membrane protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=YE1253 YE1254 YE1254 YE1254 1397537 1398115 + putative exported protein gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=YE1254 YE1255 YE1255 ascG ascG 1398513 1399544 - putative regulatory protein Similar to Escherichia coli cryptic asc operon PTS system repressor AscG or B2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 3.2e-78%2C 64.95 id in 331 aa%2C and to Escherichia coli O157:H7 AscBF operon repressor AscG or z4022 or ecs3570 SWALL:Q8X843 (EMBL:AE005499) (337 aa) fasta scores: E(): 2.8e-78%2C64.34 38d in 331 aa gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=YE1255 YE1256 YE1256 ascF ascF 1399879 1401345 + PTS transport protein Similar to Escherichia coli PTS system%2C arbutin-%2Ccellobiose-%2C and salicin-specific II ABC component Ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 4.3e-138%2C 81.11 38d in 466 aa%2C and to Escherichia coli O157:H7 PTS system enzyme II ABC Ascf or z4023 or ecs3571 SWALL:Q8X842 (EMBL:AE005500) (485 aa) fasta scores: E(): 6.2e-140%2C 79.67 38d in 487 aa gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=YE1256 YE1257 YE1257 ascB ascB 1401361 1402791 + putative 6-phospho-beta-glucosidase Similar to Escherichia coli 6-phospho-beta-glucosidase AscB or b2716 SWALL:ASCB_ECOLI (SWALL:P24240) (474 aa) fasta scores: E(): 4e-175%2C 83.08 id in 473 aa%2C and to Escherichia coli O157:H7 6-phospho-beta-glucosidase%2C cryptic ascB or z4024 or ecs3572 SWALL:Q8X841 (EMBL:AE005500) (474 aa) fasta scores: E(): 2.6e-175%2C 83.51 38d in 473 aa gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=YE1257 YE1258 YE1258 YE1258 1402884 1403195 - conserved hypothetical protein gene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=YE1258 YE1259 YE1259 YE1259 1403195 1403854 - conserved hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo0864 SWALL:Q8ZHM7 (EMBL:AJ414145) (226 aa) fasta scores: E(): 1.1e-59%2C 78.57 38d in 210 aa and Caulobacter crescentus hypothetical protein Cc3691 SWALL:Q9A275 (EMBL:AE006026) (152 aa) fasta scores: E(): 1.1e-18%2C47.02 38d in 151 aa%2C and to Escherichia coli O157:H7 orf%2Chypothetical protein yqji or z4424 or ecs3953 SWALL:Q8XAN2 (EMBL:AE005536) (207 aa) fasta scores: E(): 7.4e-17%2C36.45 38d in 203 aa gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=YE1259 YE1260 YE1260 YE1260 1404268 1404600 - conserved hypothetical protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=YE1260 YE1261 YE1261 YE1261 1404851 1405099 - putative phage integrase (pseudogene) Similar to Escherichia coli O157:H7 integrase protein for prophage CP-933i Z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 1e-18%2C 64.63 id in 82 aa and Yersinia pestis putative phage integrase Ypo4033 SWALL:Q8Z9Z6 (EMBL:AJ414160) (397 aa) fasta scores: E(): 7.8e-15%2C 69.23 38d in 65 aa pseudogene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=YE1261 YE1262 YE1262 YE1262 1405460 1406371 - putative inner membrane protein Similar to many including: Salmonella typhimurium putative transport YfdC or Stm2393 SWALL:Q8ZNA4 (EMBL:AE008807) (313 aa) fasta scores: E(): 3.4e-76%2C68.27 38d in 290 aa and Escherichia coli hypothetical protein YfdC or b2347 SWALL:YFDC_ECOLI (SWALL:P37327) (310 aa) fasta scores: E(): 7.2e-75%2C 67.46 38d in 292 aa gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=YE1262 YE1263 YE1263 ccmA ccmA 1406645 1407271 + putative heme exporter protein A gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=YE1263 YE1264 YE1264 ccmB ccmB 1407271 1407930 + heme exporter protein B gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=YE1264 YE1265 YE1265 ccmC ccmC 1408101 1408838 + putative heme exporter protein C gene gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=YE1265 YE1266 YE1266 ccmD ccmD 1408835 1409080 + putative heme exporter protein D gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=YE1266 YE1267 YE1267 ccmE ccmE 1409080 1409574 + putative cytochrome c-type biogenesis protein gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=YE1267 YE1268 YE1268 ccmF ccmF 1409571 1411538 + putative cytochrome c-type biogenesis protein gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=YE1268 YE1269 YE1269 ccmG ccmG 1411538 1412104 + thiol:disulfide interchange protein DsbE gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=YE1269 YE1270 YE1270 ccmH ccmH 1412197 1412607 + putative cytochrome c-type biogenesis protein gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=YE1270 YE1271 YE1271 vacJ vacJ 1412607 1413827 + VacJ lipoprotein gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=YE1271 YE1272 YE1272 vacJ vacJ 1413864 1414628 + VacJ lipoprotein gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=YE1272 YE1273 YE1273 YE1273 1414914 1415177 + hypothetical protein Weakly similar to Escherichia coli%2C and Escherichia coli O157:H7 PemI-like protein 1 ChpR or maze or chpai or b2783 or z4098 or ecs3643 SWALL:CHPR_ECOLI (SWALL:P18534) (82 aa) fasta scores: E(): 0.012%2C 27.84 38d in 79 aa gene gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=YE1273 YE1274 YE1274 fadL fadL 1415768 1417042 - putative long-chain fatty acid transport protein gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=YE1274 YE1275 YE1275 YE1275 1417467 1417778 + conserved hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2745 SWALL:Q8ZD47 (EMBL:AJ414153) (98 aa) fasta scores: E(): 1.3e-32%2C 82.52 38d in 103 aa and to Escherichia coli O157:H7 hypothetical protein Z3606 or Ecs3226 SWALL:Q8XCN7 (EMBL:AE005466) (102 aa) fasta scores: E(): 7.9e-25%2C68.75 38d in 96 aa gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=YE1275 YE1276 YE1276 YE1276 1418075 1419385 + putative 3-ketoacyl-CoA thiolase gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=YE1276 YE1277 YE1277 faoA faoA 1419523 1421622 + putative fatty oxidation complex alpha subunit%2Cenoyl-CoA hydratase gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=YE1277 YE1278 YE1278 sixA sixA 1422004 1422495 + putative phosphohistidine phosphatase gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=YE1278 YE1279 YE1279 YE1279 1422623 1423153 - conserved hypothetical protein gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=YE1279 YE1280 YE1280 YE1280 1423360 1424292 + conserved hypothetical protein gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=YE1280 YE1281 YE1281 aroC aroC 1424369 1425454 + chorismate synthase gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=YE1281 YE1282 YE1282 mepA mepA 1425460 1426287 + putative penicillin-insensitive murein endopeptidase gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=YE1282 YE1283 YE1283 yfcA yfcA 1426291 1427097 + putative membrane protein gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=YE1283 YE1284 YE1284 YE1284 1427181 1427723 + conserved hypothetical protein gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=YE1284 YE1285 YE1285 YE1285 1427974 1428249 + conserved hypothetical protein gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=YE1285 YE1286 YE1286 YE1286 1428355 1430187 - conserved hypothetical protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=YE1286 YE1287 YE1287 fabB fabB 1430569 1431792 + 3-oxoacyl-[acyl-carrier-protein] synthase I gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=YE1287 YE1288 YE1288 YE1288 1432211 1433218 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa0338 SWALL:Q9I6F5 (EMBL:AE004471) (376 aa) fasta scores: E(): 2.5e-44%2C 43.43 38d in 320 aa and to Aquifex aeolicus hypothetical protein Aq_689 aq_689 SWALL:O66912 (EMBL:AE000702) (336 aa) fasta scores: E(): 6e-19%2C 29.08 id in 337 aa gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=YE1288 YE1289 YE1289 YE1289 1433256 1433954 - putative aspartate/glutamate racemase gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=YE1289 YE1290 YE1290 YE1290 1434169 1435563 - putative exported protein Weakly similar to many maltoporins including: Yersinia pestis maltoporin precursor 1 LamB1 or LamB or Ypo3711 or y0032 SWALL:LMB1_YERPE (SWALL:Q8ZAS9) (423 aa) fasta scores: E(): 2.4e-14%2C 27.19 38d in 445 aa and to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 6.3e-12%2C 24.76 38d in 424 aa gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=YE1290 YE1291 YE1291 YE1291 1435952 1436254 - putative PTS system protein Similar to many PTS system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 PTS system%2Ccellobiose-specific IIA component CelC or b1736 or z2766 or ecs2442 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 4.6e-16%2C 52.04 38d in 98 aa%2C Vibrio cholerae PTS system%2C cellobiose-specific IIA component Vc1283 SWALL:Q9KSH3 (EMBL:AE004207) (111 aa) fasta scores: E(): 2.4e-15%2C 52.04 38d in 98 aa and to Yersinia pestis PTS system%2C cellobiose-specific IIA component CelC or ypo2680 SWALL:Q8ZDA8 (EMBL:AJ414153) (115 aa) fasta scores: E(): 1.6e-14%2C 49.48 38d in 97 aa gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=YE1291 YE1292 YE1292 YE1292 1436269 1437651 - putative glycosyl hydrolase Similar to many putative glycosyl hydrolases including: Salmonella typhi Sty4009 SWALL:Q8Z2J8 (EMBL:AL627280) (460 aa) fasta scores: E(): 4.5e-174%2C83.04 38d in 460 aa%2C Listeria monocytogenes hypothetical protein Lmo0574 SWALL:Q8Y9F4 (EMBL:AL591975) (464 aa) fasta scores: E(): 4.6e-132%2C 63.71 38d in 463 aa and Caldocellum saccharolyticum beta-glucosidase a BglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3e-53%2C 33.26 38d in 463 aa gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=YE1292 YE1293 YE1293 YE1293 1437668 1438999 - putative PTS system protein Similar to many PTS system proteins including: Vibrio cholerae PTS system%2C cellobiose-specific IIC component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 6.3e-91%2C 47.86 38d in 422 aa%2CLactobacillus casei PTS system%2C lactose-specific IIBC component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 4.9e-42%2C 31.83 38d in 446 aa gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=YE1293 YE1294 YE1294 YE1294 1439012 1439326 - putative exported PTS system protein Similar to Vibrio cholerae PTS system%2Ccellobiose-specific IIB component Vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.5e-15%2C51.48 38d in 101 aa and to Bacillus stearothermophilus PTS system%2C cellobiose-specific IIB component CelA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 3.8e-11%2C 44.79 38d in 96 aa gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=YE1294 YE1295 YE1295 YE1295 1439678 1440634 + putative LacI-family transcriptional regulatory protein Similar to Clostridium acetobutylicum transcriptional regulator%2C LacI family Cac0360 SWALL:Q97M40 (EMBL:AE007550) (328 aa) fasta scores: E(): 3.5e-12%2C 25.41 38d in 303 aa and to Haemophilus influenzae galactose operon repressor GalR or gals or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 6.5e-09%2C 29.33 38d in 300 aa gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=YE1295 YE1296 YE1296 YE1296 1440917 1442218 + putative phosphatase Similar to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 9.1e-52%2C 49.65 38d in 429 aa%2C and to Salmonella typhimurium glucose-1-phosphatase precursor Agp or Stm1117 SWALL:AGP_SALTY (SWALL:O33921) (413 aa) fasta scores: E(): 2.6e-49%2C 47.8 38d in 410 aa gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=YE1296 YE1297 YE1297 YE1297 1442334 1443467 + putative inner membrane protein Similar to Escherichia coli hypothetical protein YbiR or b0818 SWALL:YBIR_ECOLI (SWALL:P75788) (372 aa) fasta scores: E(): 1.4e-78%2C 57.53 38d in 365 aa and to Salmonella typhi putative membrane protein YbiR or Sty0877 SWALL:Q8Z871 (EMBL:AL627268) (370 aa) fasta scores: E(): 1.8e-78%2C 58.95 38d in 363 aa gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=YE1297 YE1298 YE1298 flk flk 1443557 1444594 - putative flagellar assembly regulatory protein%2CFlk gene gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=YE1298 YE1299 YE1299 scsA scsA 1444897 1445253 + putative metal resistance protein Similar to Salmonella typhimurium suppressor for copper-sensitivity A ScsA or Stm1113 SWALL:O33917 (EMBL:U75949) (120 aa) fasta scores: E(): 2.6e-22%2C 57.37 id in 122 aa and to Salmonella typhi membrane protein%2Csuppressor for copper-sensitivity A ScsA or Sty1149 SWALL:Q8Z7P5 (EMBL:AL627269) (120 aa) fasta scores: E(): 2.6e-22%2C 57.37 38d in 122 aa gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=YE1299 YE1300 YE1300 scsB scsB 1445304 1447364 + putative metal resistance protein Similar to Salmonella typhimurium suppression of copper sensitivity ScsB or Stm1114 SWALL:Q8ZQ43 (EMBL:AE008748) (628 aa) fasta scores: E(): 1.1e-115%2C55.03 38d in 685 aa and to Salmonella typhi membrane protein%2C suppressor for copper-sensitivity B ScsB or sty1150 SWALL:Q8Z7P4 (EMBL:AL627269) (628 aa) fasta scores: E(): 1.1e-115%2C 55.18 38d in 685 aa%2C and to Xylella fastidiosa c-type cytochrome biogenesis protein xf0620 SWALL:Q9PFN7 (EMBL:AE003907) (758 aa) fasta scores: E(): 7.8e-36%2C 31.03 38d in 435 aa gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=YE1300 YE1301 YE1301 YE1301 1447361 1448086 + putative metal resistance protein Similar to Salmonella typhimurium suppressor for copper-sensitivity C precursor ScsC or Stm1115 SWALL:O33919 (EMBL:U75949) (207 aa) fasta scores: E(): 1.9e-38%2C 47.71 38d in 241 aa%2C and to Salmonella typhi secreted protein%2C suppressor for copper-sensitivity ScsC or Sty1151 SWALL:Q8Z7P3 (EMBL:AL627269) (207 aa) fasta scores: E(): 1.9e-38%2C 47.71 38d in 241 aa%2C and to Rickettsia conorii similarity to thiol:disulfide interchange protein dsba rc0597 SWALL:Q92I23 (EMBL:AE008620) (263 aa) fasta scores: E(): 8.2e-17%2C28.97 38d in 214 aa gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=YE1301 YE1302 YE1302 YE1302 1448083 1448583 + putative metal resistance protein Similar to Salmonella typhimurium suppression of copper sensitivity ScsD or Stm1116 SWALL:Q8ZQ42 (EMBL:AE008748) (168 aa) fasta scores: E(): 2.5e-37%2C56.79 38d in 162 aa%2C and to Salmonella typhimurium suppressor for copper-sensitivity D ScsD SWALL:O33920 (EMBL:U75949) (168 aa) fasta scores: E(): 2.5e-37%2C 56.79 id in 162 aa%2C and to Haemophilus influenzae thioredoxin-like protein Hi1115 hi1115 SWALL:THIX_HAEIN (SWALL:P43787) (167 aa) fasta scores: E(): 1.6e-28%2C 45.12 id in 164 aa gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=YE1302 YE1303 YE1303 YE1303 1448640 1450121 - conserved hypothetical protein Similar to many proteins which displaying both a GntR-family trancriptional regulatory HTH domain and an amino transferase domain a including: Thermoplasma acidophilum aspartate aminotransferase related protein Ta1193 SWALL:Q9HIY3 (EMBL:AL445066) (402 aa) fasta scores: E(): 1.2e-40%2C 33.24 38d in 373 aa%2C Pyrococcus abyssi aminotransferase Pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.9e-39%2C 33.6 38d in 369 aa and to Anabaena sp. transcriptional regulator Alr4738 SWALL:Q8YN32 (EMBL:AP003597) (490 aa) fasta scores: E(): 6.4e-39%2C 32.16 38d in 485 aa gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=YE1303 YE1304 YE1304 YE1304 1450279 1451322 + putative inner membrane protein Similar to many putative membrane proteins including: Methanosarcina acetivorans integral membrane protein Ma3243 SWALL:AAM06614 (EMBL:AE011028) (291 aa) fasta scores: E(): 5.6e-10%2C 27.97 38d in 311 aa and Bacillus halodurans hypothetical protein Bh2747 SWALL:Q9K9A2 (EMBL:AP001516) (302 aa) fasta scores: E(): 4.5e-07%2C 22.71 38d in 295 aa gene gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=YE1304 YE1305 YE1305 YE1305 1451329 1452213 - putative membrane protein gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=YE1305 YE1306 YE1306 YE1306 1452386 1453171 + putative AraC-family regulatory protein gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=YE1306 YE1307 YE1307 pdxB pdxB 1453333 1454460 + putative D-isomer specific 2-hydroxyacid dehydrogenase gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=YE1307 YE1308 YE1308 asd asd 1454845 1455855 + putative aspartate-semialdehyde dehydrogenase gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=YE1308 YE1309 YE1309 truA truA 1455855 1456697 + tRNA pseudouridine synthase A Similar to Escherichia coli tRNA pseudouridine synthase a TruA or HisT or asuc or leuk or b2318 SWALL:TRUA_ECOLI (SWALL:P07649) (270 aa) fasta scores: E(): 1.4e-89%2C 79.61 38d in 260 aa%2C and to Yersinia pestis tRNA pseudouridine synthase a TruA or Ypo2766 SWALL:Q8ZD27 (EMBL:AJ414153) (264 aa) fasta scores: E(): 2.4e-107%2C92.74 38d in 262 aa gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=YE1309 YE1310 YE1310 dedA dedA 1456829 1457491 + putative membrane protein gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=YE1310 YE1311 YE1311 accD accD 1457722 1458633 + acetyl-coenzyme A carboxylase carboxyl transferase subunit beta gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=YE1311 YE1312 YE1312 folC folC 1459015 1460283 + putative FolC bifunctional protein gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=YE1312 YE1313 YE1313 dedD dedD 1460323 1461042 + putative membrane protein gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=YE1313 YE1314 YE1314 cvpA cvpA 1461233 1461742 + putative colicin V production protein gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=YE1314 YE1315 YE1315 purF purF 1461755 1463272 + amidophosphoribosyltransferase gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=YE1315 YE1317 YE1317 ubiX ubiX 1463680 1464252 + probable 3-octaprenyl-4-hydroxybenzoate carboxy-lyase gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=YE1317 YE1318 YE1318 hisJ hisJ 1464561 1465343 + histidine-binding periplasmic protein gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=YE1318 YE1319 YE1319 hisQ hisQ 1465448 1466134 + histidine transport system permease protein HisQ gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=YE1319 YE1320 YE1320 hisM hisM 1466131 1466847 + histidine transport system permease protein HisM gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=YE1320 YE1321 YE1321 hisP hisP 1466883 1467680 + histidine transport ATP-binding protein HisP gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=YE1321 YE1322 YE1322 YE1322 1467937 1474269 + putative RTX-family protein Similar to many RTX-family toxins including: Yersinia pestis putative virulence determinant Ypo0947 SWALL:Q8ZHF2 (EMBL:AJ414145) (3110 aa) fasta scores: E(): 7e-25%2C 21.71 38d in 1630 aa%2C Actinobacillus actinomycetemcomitans leukotoxin LktA or ltA SWALL:LKTA_ACTAC (SWALL:P16462) (1050 aa) fasta scores: E(): 9.7e-11%2C 25.24 38d in 519 aa and Pasteurella haemolytica leukotoxin from serotype a11 LktA SWALL:LKAB_PASHA (SWALL:P55118) (953 aa) fasta scores: E(): 1.1e-09%2C 23.86 38d in 746 aa gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=YE1322 YE1323 YE1323 YE1323 1474340 1475248 - conserved hypothetical protein gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=YE1323 YE1324 YE1324 YE1324 1475876 1476574 + conserved hypothetical protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=YE1324 YE1325 YE1325 YE1325 1476888 1477349 + conserved hypothetical protein gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=YE1325 YE1326 YE1326 YE1326 1477421 1477969 + conserved hypothetical protein gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=YE1326 YE1327 YE1327 YE1327 1478092 1478550 - transposase for the IS1541 insertion element gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=YE1327 YE1328 YE1328 YE1328 1478953 1480209 - putative membrane protein gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=YE1328 YE1329 YE1329 YE1329 1480222 1480509 - phosphotransferase enzyme II%2C B component gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=YE1329 YE1330 YE1330 YE1330 1480552 1480995 - phosphotransferase enzyme II%2C A component gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=YE1330 YE1331 YE1331 YE1331 1481241 1482266 + LacI-family transcriptional regulatory protein gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=YE1331 YE1333 YE1333 pta pta 1482848 1485001 - phosphate acetyltransferase gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=YE1333 YE1334 YE1334 ackA ackA 1485159 1486361 - acetate kinase gene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=YE1334 YE1335 YE1335 YE1335 1486794 1487249 + conserved hypothetical protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=YE1335 YE1336 YE1336 YE1336 1487418 1487912 + conserved hypothetical protein gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=YE1336 YE1337 YE1337 YE1337 1487953 1488615 + putative haloacid dehalogenase-like hydrolase gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=YE1337 YE1338 YE1338 YE1338 1488851 1489648 - putative exported protein no significant database hits gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=YE1338 YE1339 YE1339 YE1339 1489966 1491849 + putative ion transport protein gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=YE1339 YE1340 YE1340 YE1340 1492019 1492612 - conserved hypothetical protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=YE1340 YE1341 YE1341 aat aat 1493279 1494493 - probable aminotransferase gene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=YE1341 YE1343 YE1343 pecT pecT 1495357 1496289 + LysR-family transcriptional regulatory protein gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=YE1343 YE1344 YE1344 nuoA nuoA 1497136 1497588 + NADH dehydrogenase I chain A Note the predicted product of this CDS is shorter than those of other Yersinia orthologues and may have a frameshift following codon 147. However this is thought unlikely to affect function. gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=YE1344 YE1345 YE1345 nuoB nuoB 1497746 1498423 + NADH dehydrogenase I chain B gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=YE1345 YE1346 YE1346 nuoD nuoD 1498563 1500359 + NADH dehydrogenase I chain C/D gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=YE1346 YE1347 YE1347 nuoE nuoE 1500407 1500925 + NADH dehydrogenase I chain E gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=YE1347 YE1348 YE1348 nuoF nuoF 1500922 1502292 + NADH dehydrogenase I chain F gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=YE1348 YE1349 YE1349 nuoG nuoG 1502398 1505142 + NADH dehydrogenase I chain G gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=YE1349 YE1350 YE1350 nuoH nuoH 1505139 1506116 + NADH dehydrogenase I chain H gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=YE1350 YE1351 YE1351 nuoI nuoI 1506131 1506673 + NADH Dehydrogenase I chain I gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=YE1351 YE1352 YE1352 nuoJ nuoJ 1506686 1507231 + NADH dehydrogenase I chain J gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=YE1352 YE1353 YE1353 nuoK nuoK 1507228 1507530 + NADH dehydrogenase i chain k gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=YE1353 YE1354 YE1354 nuoL nuoL 1507527 1509371 + NADH dehydrogenase I chain L gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=YE1354 YE1355 YE1355 nuoM nuoM 1509390 1510913 + NADH dehydrogenase I chain M gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=YE1355 YE1356 YE1356 nuoN nuoN 1510920 1512377 + NADH dehydrogenase I chain N gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=YE1356 YE1357 YE1357 YE1357 1512494 1513834 + conserved hypothetical protein gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=YE1357 YE1358 YE1358 YE1358 1513997 1514488 + putative exported protein Similar to many proteins of unknown function including: Escherichia coli hypothetical protein YcdZ or b1036 SWALL:YCDZ_ECOLI (SWALL:P75916) (163 aa) fasta scores: E(): 6.7e-45%2C 78.8 38d in 151 aa and Salmonella typhimurium hypothetical protein YcdZ or Stm1138 SWALL:YCDZ_SALTY (SWALL:O54290) (160 aa) fasta scores: E(): 4.5e-44%2C 76.82 38d in 151 aa gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=YE1358 YE1359 YE1359 YE1359 1514983 1516002 + putative transposase for IS1667 Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 2.3e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 6e-50%2C 42.16 38d in 332 aa gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=YE1359 YE1361 YE1361 YE1361 1516482 1516949 - conserved hypothetical protein gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=YE1361 YE1362 YE1362 idnK idnK 1516990 1517520 - putative thermosensitive gluconokinase gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=YE1362 YE1363 YE1363 idnO idnO 1517663 1518427 - gluconate 5-dehydrogenase gene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=YE1363 YE1364 YE1364 YE1364 1518810 1519802 + putative LacI-family transcriptional regulatory protein gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=YE1364 YE1365 YE1365 YE1365 1520242 1521150 + putative D-isomer specific 2-hydroxyacid dehydrogenase family protein gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=YE1365 YE1366 YE1366 YE1366 1521325 1522641 + putative sugar transporter gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=YE1366 YE1367 YE1367 YE1367 1522704 1523210 + conserved hypothetical protein gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=YE1367 YE1368 YE1368 edd edd 1523214 1525031 + phosphogluconate dehydratase gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=YE1368 YE1369 YE1369 YE1369 1525083 1526504 - putative dehydrogenase%2C cytochrome C subunit Similar to many including: Pantoea agglomerans cytochrome C subunit II SWALL:Q9RH53 (EMBL:AF068066) (470 aa) fasta scores: E(): 9.5e-110%2C 61.48 38d in 470 aa%2C and to Gluconobacter oxydans sorbitol dehydrogenase cytochrome C subunit SldC SWALL:Q9LBK7 (EMBL:AB039821) (478 aa) fasta scores: E(): 7.4e-73%2C 44.25 38d in 479 aa gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=YE1369 YE1370 YE1370 YE1370 1526501 1528153 - putative dehydrogenase subunit Similar to many incluuding: Pantoea agglomerans dehydrogenase subunit I SWALL:Q9RH54 (EMBL:AF068066) (551 aa) fasta scores: E(): 5.7e-188%2C 80.69 38d in 549 aa and Pantoea citrea 2-keto-gluconate dehydrogenase subunit KdgB SWALL:Q9XCR0 (EMBL:AF131202) (553 aa) fasta scores: E(): 8.8e-188%2C 81.8 38d in 544 aa gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=YE1370 YE1370A YE1370A YE1370A 1528153 1528734 - putative dehydrogenase subunit Similar to Pantoea citrea 2-keto-gluconate dehydrogenase subunit KdgA SWALL:Q9XCR1 (EMBL:AF131202) (189 aa) fasta scores: E(): 4.7e-19%2C 38.41 38d in 177 aa and to Pantoea agglomerans dehydrogenase subunit III SWALL:Q9RH55 (EMBL:AF068066) (188 aa) fasta scores: E(): 3.5e-23%2C 45.76 38d in 177 aa gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=YE1370A YE1371 YE1371 elaB elaB 1529089 1529397 + putative membrane protein gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=YE1371 YE1372 YE1372 YE1372 1529782 1532073 + putative autotransporter protein gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=YE1372 YE1373 YE1373 menF menF 1532262 1533620 + menaquinone-specific isochorismate synthase gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=YE1373 YE1375 YE1375 menD menD 1533849 1535522 + menaquinone biosynthesis protein gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=YE1375 YE1376 YE1376 YE1376 1535609 1536343 + conserved hypothetical protein gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=YE1376 YE1377 YE1377 menB menB 1536357 1537214 + naphthoate synthase gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=YE1377 YE1378 YE1378 menC menC 1537214 1538185 + putative O-succinylbenzoate-CoA synthase gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=YE1378 YE1379 YE1379 menE menE 1538356 1539594 + putative O-succinylbenzoic acid--CoA ligase gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=YE1379 YE1380 YE1380 katA katA 1539790 1541232 - catalase gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=YE1380 YE1381 YE1381 YE1381 1541620 1542129 + putative exported protein gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=YE1381 YE1382 YE1382 tyrP tyrP 1542202 1543410 - tyrosine-specific transport protein gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=YE1382 YE1383 YE1383 YE1383 1543640 1544833 + conserved hypothetical protein gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=YE1383 YE1384 YE1384 YE1384 1545073 1545828 + putative exported protein (pseudogene) no significant database hits. This CDS is highly similar to YE1386 82.400 38dentity in 250 aa overlap%2CYE1387 73.200 38dentity in 250 aa overlap and YE1388 69.565 38dentity in 253 aa overlap. However this CDS caries a stop codon within the seqence following codon 63. pseudogene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=YE1384 YE1386 YE1386 YE1386 1545840 1546622 + putative exported protein no significant database hits. This CDS is highly similar to YE1384 82.400 38dentity in 250 aa overlap%2CYE1387 87.692 38dentity in 260 aa overlap and YE1388 82.510 38dentity in 263 aa overlap gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=YE1386 YE1387 YE1387 YE1387 1546634 1547410 + putative exported protein no significant database hits. This CDS is highly similar to YE1384 73.200 38dentity in 250 aa overlap%2CYE1386 87.692 38dentity in 260 aa overlap and YE1388 83.908 38dentity in 261 aa overlap gene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=YE1387 YE1388 YE1388 YE1388 1547422 1548207 + putative exported protein no significant database hits. This CDS is highly similar to YE1384 69.565 38dentity in 253 aa overlap%2CYE1386 82.510 38dentity in 260 aa overlap and YE1387 83.908 38dentity in 261 aa overlap gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=YE1388 YE1389 YE1389 YE1389 1548219 1553630 + putative serine protease Similar to many putative Prokaryotic and Eukaryotic serine proteases including: Branchiostoma californiensis proprotein convertase subtilisin/kexin type 5 precursor pc6 SWALL:PCK5_BRACL (SWALL:Q9NJ15) (1696 aa) fasta scores: E(): 4.7e-23%2C 30.03 38d in 536 aa%2C Anabaena sp. hypothetical protein All0364 SWALL:Q8YZU3 (EMBL:AP003582) (900 aa) fasta scores: E(): 1.3e-54%2C 34.47 38d in 847 aa%2CHydra attenuata pc3-like endoprotease variant B precursor SWALL:NECB_HYDAT (SWALL:P29145) (710 aa) fasta scores: E(): 8.5e-15%2C 28.8 38d in 493 aa and to Mus musculus proprotein convertase subtilisin/kexin type 7 precursor pcsk7 or pc7 SWALL:PCK7_MOUSE (SWALL:Q61139) (770 aa) fasta scores: E(): 2.8e-12%2C 27.16 38d in 519 aa gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=YE1389 YE1390 YE1390 eco eco 1553727 1554233 - putative ecotin precursor gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=YE1390 YE1391 YE1391 YE1391 1554492 1554737 - putative iron-sulphur binding protein gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=YE1391 YE1392 YE1392 nrdB nrdB 1554877 1556007 - ribonucleoside-diphosphate reductase 1 beta chain gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=YE1392 YE1393 YE1393 nrdA nrdA 1556093 1558378 - ribonucleoside-diphosphate reductase 1 alpha chain gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=YE1393 YE1394 YE1394 ubiG ubiG 1558895 1559623 - 3-demethylubiquinone-9 3-methyltransferase gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=YE1394 YE1395 YE1395 gyrA gyrA 1559825 1562482 + DNA gyrase subunit A gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=YE1395 YE1396 YE1396 rcsC rcsC 1562600 1565467 + two component sensor kinase/response regulator protein RcsC gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=YE1396 YE1397 YE1397 rcsB rcsB 1565655 1566302 - probable two component response regulator component B gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=YE1397 YE1398 YE1398 YE1398 1566305 1568998 - putative two component sensor kinase Similar to Salmonella typhimurium sensor protein RcsC or Stm2271 SWALL:RCSC_SALTY (SWALL:P58662) (948 aa) fasta scores: E(): 1.6e-21%2C 21.72 38d in 755 aa%2C and to Salmonella typhimurium putative regulator YojN SWALL:Q9X6X6 (EMBL:AF153717) (889 aa) fasta scores: E(): 3.8e-153%2C 47.99 38d in 896 aa gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=YE1398 YE1399 YE1399 YE1399 1569021 1570175 - putative membrane protein gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=YE1399 YE1400 YE1400 YE1400 1570728 1571242 + Putative type I secretion protein (pseudogene) Similar in parts to many type I secretion proteins including: Bordetella pertussis CyaD protein SWALL:CYAD_BORPE (SWALL:P11091) (440 aa) fasta scores: E(): 4.2e-08%2C 33.1 38d in 145 aa%2C Salmonella typhi putative type I secretion protein sty2878 SWALL:Q8Z4H8 (EMBL:AL627276) (387 aa) fasta scores: E(): 2.5e-27%2C52.53 38d in 158 aa and to Agrobacterium tumefaciens HlyD family secretion protein PrsE or atu2706 or agr_c_4904 SWALL:Q8UBZ2 (EMBL:AE009216) (437 aa) fasta scores: E(): 3.3e-09%2C 37.4 38d in 131 aa. Note this CDS has undergone extensive deletion and mutation events. pseudogene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=YE1400 YE1401 YE1401 meoA meoA 1571842 1573016 + mRNA gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=YE1401 YE1402 YE1402 ampH ampH 1573531 1574673 - putative penicillin-binding protein gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=YE1402 YE1403 YE1403 YE1403 1574853 1576325 - putative transport protein gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=YE1403 YE1404 YE1404 YE1404 1576769 1577782 + conserved hypothetical protein gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=YE1404 YE1405 YE1405 tsr2 tsr2 1577852 1579639 - putative methyl-accepting chemotaxis protein gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=YE1405 YE1406 YE1406 YE1406 1579969 1580899 - putative protease (pseudogene) Similar to many including: Yersinia pestis coagulase/fibrinolysin precursor Pla or Yppcp1.07 SWALL:COLY_YERPE (SWALL:P17811) (312 aa) fasta scores: E(): 2.4e-56%2C 47.74 38d in 310 aa%2C and to Yersinia pestis putative outer membrane-associated protease Pla2 or Ypo1231 SWALL:Q8ZGQ6 (EMBL:AJ414147) (311 aa) fasta scores: E(): 1.2e-75%2C 60.38 38d in 313 aa%2C and to Salmonella typhimurium outer membrane protease E precursor PgtE or PrtA or stm2395 SWALL:PGTE_SALTY (SWALL:P06185) (312 aa) fasta scores: E(): 8.6e-53%2C 46.12 38d in 310 aa pseudogene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=YE1406 YE1408 YE1408 msgA msgA 1581064 1581306 - putative stress response protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=YE1408 YE1409 YE1409 YE1409 1581739 1582461 - putative prophage repressor protein gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=YE1409 YE1410 YE1410 YE1410 1582736 1583215 + probable phage antitermination protein Q gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=YE1410 YE1411 YE1411 YE1411 1583325 1583603 + putative bacteriophage protein gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=YE1411 YE1412 YE1412 YE1412 1583959 1584236 + transposase for insertion element IS285 (pseudogene) Similar to Yersinia pestis IS285 transposase SWALL:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 2.6e-38%2C 53.05 38d in 360 aa. Note this CDS has been subject to extensive deletion/frameshift events. pseudogene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=YE1412 YE1414 YE1414 tpn1330 tpn1330 1584441 1585634 + transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 2e-162%2C 98.74 id in 397 aa. Also similar to Shigella flexneri%2C and Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 8.6e-114%2C68.51 38d in 397 aa gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=YE1414 YE1415 YE1415 YE1415 1585808 1586548 + putative LacI-family regulatory protein gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=YE1415 YE1416 YE1416 YE1416 1586713 1588254 + Putative PTS-system permease Similar to Erwinia chrysanthemi PTS system%2Cbeta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 5.8e-33%2C 36.24 38d in 516 aa%2C and to Lactobacillus plantarum permease BglP SWALL:Q9L461 (EMBL:AJ250202) (577 aa) fasta scores: E(): 3.9e-41%2C 39.22 38d in 515 aa gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=YE1416 YE1417 YE1417 bglA bglA 1588343 1589779 + 6-phospho-beta-glucosidase gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=YE1417 YE1418 YE1418 YE1418 1590524 1591555 - putative O-methyltransferase Similar to many O-methyltransferases including: Streptomyces lipmanii O-demethylpuromycin-o-methyltransferase DmpM SWALL:DMPM_STRLP (SWALL:P42712) (376 aa) fasta scores: E(): 6.6e-26%2C 32.64 38d in 337 aa%2C Streptomyces avermitilis O-methyltransferase SWALL:Q93HA8 (EMBL:AB070947) (359 aa) fasta scores: E(): 5.4e-22%2C29.74 38d in 316 aa and Pseudomonas aeruginosa probable O-methyltransferase Pa4209 SWALL:Q9HWH2 (EMBL:AE004837) (334 aa) fasta scores: E(): 3.3e-20%2C 29.44 38d in 343 aa gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=YE1418 YE1419 YE1419 YE1419 1592097 1593890 - putative membrane protein gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=YE1419 YE1420 YE1420 YE1420 1593918 1594145 - conserved hypothetical protein gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=YE1420 YE1421 YE1421 YE1421 1594323 1595324 + putative nucleoid-associated protein gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=YE1421 YE1422 YE1422 rplY rplY 1595406 1595693 - 50S ribosomal protein L25 gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=YE1422 YE1423 YE1423 YE1423 1595855 1597612 - putative DEAD box helicase family protein gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=YE1423 YE1424 YE1424 rsuA rsuA 1597953 1598660 + ribosomal small subunit pseudouridine synthase A gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=YE1424 YE1425 YE1425 bcr bcr 1598810 1599982 + probable drug resistance translocator protein gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=YE1425 YE1426 YE1426 YE1426 1600698 1601045 + conserved hypothetical protein gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=YE1426 YE1427 YE1427 YE1427 1601117 1602709 - putative ABC transporter ATP-binding subunit gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=YE1427 YE1428 YE1428 YE1428 1602711 1603739 - putative ABC transporter integral membrane subunit gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=YE1428 YE1429 YE1429 YE1429 1603736 1604836 - putative ABC transporter integral membrane subunit gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=YE1429 YE1430 YE1430 YE1430 1604846 1606654 - putative substrate-binding transport protein gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=YE1430 YE1431 YE1431 YE1431 1606753 1608315 - putative membrane protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=YE1431 YE1432 YE1432 YE1432 1608604 1608813 + hypothetical protein doubtful CDS with no significant database hits gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=YE1432 YE1433 YE1433 spr spr 1608821 1609405 - putative lipoprotein gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=YE1433 YE1434 YE1434 YE1434 1609784 1610485 - putative membrane protein gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=YE1434 YE1435 YE1435 YE1435 1610549 1611532 - putative cobalamin synthesis protein gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=YE1435 YE1436 YE1436 YE1436 1611844 1612170 + putative membrane protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=YE1436 YE1437 YE1437 YE1437 1612378 1613121 + putative transcriptional regulatory protein gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=YE1437 YE1438 YE1438 YE1438 1613415 1614887 - putative D-mannonate oxidoreductase gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=YE1438 YE1439 YE1439 YE1439 1614962 1615240 - hypothetical protein doubtful CDS with no significant database hits gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=YE1439 YE1440 YE1440 uxuA uxuA 1615332 1616522 + mannonate dehydratase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=YE1440 YE1441 YE1441 YE1441 1616709 1617281 - putative elongation factor P gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=YE1441 YE1442 YE1442 mtr mtr 1617394 1618638 - putative tryptophan-specific transport protein gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=YE1442 YE1443 YE1443 YE1443 1618976 1619230 + conserved hypothetical protein gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=YE1443 YE1444 YE1444 torA torA 1619402 1621882 - putative molybdopterin-containing oxidoreductase Highly similar to many oxidoreductases including: Rhodobacter capsulatus dimethyl sulfoxide reductase precursor DorA SWALL:DMSA_RHOCA (SWALL:Q52675) (823 aa) fasta scores: E(): 4.1e-167%2C 51.97 38d in 837 aa and Escherichia coli trimethylamine-N-oxide reductase 1 precursor TorA or b0997 SWALL:TORA_ECOLI (SWALL:P33225) (848 aa) fasta scores: E(): 1.7e-105%2C 47.01 38d in 836 aa gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=YE1444 YE1445 YE1445 torC torC 1621896 1623044 - cytochrome C-type protein Similar to Escherichia coli cytochrome C-type protein TorC or b0996 SWALL:TORC_ECOLI (SWALL:P33226) (390 aa) fasta scores: E(): 4e-55%2C 41.5 38d in 371 aa%2C and to Escherichia coli cytochrome C-type protein TorY or b1873 SWALL:TORY_ECOLI (SWALL:P52005) (366 aa) fasta scores: E(): 3.4e-55%2C 44.56 38d in 377 aa gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=YE1445 YE1446 YE1446 YE1446 1623346 1623768 - putative Mut family protein gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=YE1446 YE1447 YE1447 fruB fruB 1624049 1625182 + fructose-specific pts system component IIa gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=YE1447 YE1448 YE1448 fruK fruK 1625179 1626117 + 1-phosphofructokinase gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=YE1448 YE1449 YE1449 fruA fruA 1626132 1627817 + PTS system%2C fructose-specific IIBC component gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=YE1449 YE1450 YE1450 myfE myfE 1628085 1628750 + putative regulatory protein gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=YE1450 YE1451 YE1451 myfF myfF 1628747 1629238 + putative membrane protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=YE1451 YE1452 YE1452 myfA myfA 1629499 1629978 + pH 6 antigen precursor (antigen 4) (adhesin) gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=YE1452 YE1453 YE1453 myfB myfB 1630111 1630914 + chaperone protein gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=YE1453 YE1454 YE1454 myfC myfC 1631151 1633487 + outer membrane usher protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=YE1454 YE1455 YE1455 nfo nfo 1633555 1634400 - endonuclease IV gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=YE1455 YE1456 YE1456 YE1456 1634531 1635544 - putative membrane protein gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=YE1456 YE1457 YE1457 YE1457 1636174 1637046 + putative LysR-family transcriptional regulatory protein gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=YE1457 YE1458 YE1458 lysP lysP 1637291 1638817 + putative lysine-specific permease gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=YE1458 YE1459 YE1459 YE1459 1639092 1640174 + putative FecCD-family membrane transport protein gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=YE1459 YE1460 YE1460 YE1460 1640171 1640959 + putative siderophore ABC transporter%2CATP-binding subunit gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=YE1460 YE1461 YE1461 YE1461 1641282 1643156 + putative outer membrane protein gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=YE1461 YE1463 YE1463 YE1463 1643551 1644171 - putative glutathione S-transferase-family protein gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=YE1463 YE1464 YE1464 YE1464 1644190 1644849 - putative hydrolase gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=YE1464 YE1465 YE1465 YE1465 1645367 1646377 + putative iron/ascorbate oxidoreductase family protein gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=YE1465 YE1466 YE1466 YE1466 1646430 1647254 + putative exported protein gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=YE1466 YE1467 YE1467 YE1467 1647251 1648237 + putative ABC transport ATP-binding subunit gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=YE1467 YE1468 YE1468 YE1468 1648234 1648905 + putative ABC transport integral membrane subunit gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=YE1468 YE1469 YE1469 uptH uptH 1649022 1650167 - putative cystathionine gamma-synthase Similar to Xanthomonas campestris cystathionine gamma-synthase UptH SWALL:Q93S80 (EMBL:AF204145) (399 aa) fasta scores: E(): 3.8e-91%2C 63.73 38d in 375 aa and to Helicobacter pylori cystathionine gamma-synthase MetB or hp0106 SWALL:METB_HELPY (SWALL:P56069) (380 aa) fasta scores: E(): 4.5e-71%2C 53.43 38d in 378 aa gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=YE1469 YE1470 YE1470 uptG uptG 1650193 1651560 - cystathionine beta-lyase Similar to Xanthomonas campestris cystathionine beta-lyase UptG SWALL:Q93S79 (EMBL:AF204145) (456 aa) fasta scores: E(): 3.4e-107%2C 60.22 38d in 455 aa and to Pseudomonas aeruginosa cystathionine beta-synthase Pa0399 SWALL:Q9I6A1 (EMBL:AE004477) (457 aa) fasta scores: E(): 1.1e-108%2C 62.22 38d in 450 aa gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=YE1470 YE1471 YE1471 dacC dacC 1651953 1653170 + D-alanyl-D-alanine carboxypeptidase gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=YE1471 YE1472 YE1472 sdaB sdaB 1653406 1654773 - L-serine dehydratase 2 Similar to Escherichia coli L-serine dehydratase 2 SdaB or b2797 SWALL:SDHM_ECOLI (SWALL:P30744) (455 aa) fasta scores: E(): 6.7e-151%2C 81.31 38d in 455 aa and to Escherichia coli L-serine dehydratase 1 SdaA or b1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 5.8e-145%2C 76.92 38d in 455 aa. Note this CDS is also highly similar to YE1779 76.044 38dentity in 455 aa overlap gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=YE1472 YE1473 YE1473 sdaC sdaC 1654919 1656214 - serine transporter gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=YE1473 YE1474 YE1474 deoR deoR 1657474 1658238 - deoxyribose operon repressor gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=YE1474 YE1475 YE1475 deoC deoC 1658556 1659227 - putative deoxyribose-phosphate aldolase gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=YE1475 YE1476 YE1476 YE1476 1659502 1660098 - putative permease gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=YE1476 YE1477 YE1477 YE1477 1660107 1660877 - putative membrane protein gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=YE1477 YE1478 YE1478 YE1478 1661151 1662839 - TrkA%2C Potassium channel-family protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=YE1478 YE1479 YE1479 grxA grxA 1663249 1663512 - glutaredoxin 1 gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=YE1479 YE1481 YE1481 YE1481 1663827 1664135 + putative membrane protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=YE1481 YE1483 YE1483 YE1483 1664254 1664739 + conserved hypothetical protein gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=YE1483 YE1484 YE1484 potF potF 1665185 1666294 + putrescine-binding periplasmic protein precursor gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=YE1484 YE1485 YE1485 potG potG 1666461 1667594 + putrescine transport ATP-binding protein gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=YE1485 YE1486 YE1486 potH potH 1667631 1668596 + putrescine transport system permease protein gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=YE1486 YE1487 YE1487 potI potI 1668593 1669438 + putrescine transport system permease protein gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=YE1487 YE1488 YE1488 YE1488 1669588 1670066 + putative inner membrane protein (pseudogene) Similar to many proteins of undefined function including: Yersinia pestis putative membrane protein Ypo1335 SWALL:Q8ZGG2 (EMBL:AJ414147) (154 aa) fasta scores: E(): 6e-44%2C 72 38d in 150 aa%2C Salmonella typhi putative membrane protein Sty0914 SWALL:Q8Z842 (EMBL:AL627268) (157 aa) fasta scores: E(): 9.4e-19%2C40.64 38d in 155 aa and Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YbjO or b0858 or z1085 or ecs0938 SWALL:YBJO_ECOLI (SWALL:P75816) (162 aa) fasta scores: E(): 4.7e-17%2C 38.85 38d in 157 aa. Note this CDS contains a frameshift mutation following codon 81 pseudogene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=YE1488 YE1490 YE1490 YE1490 1670155 1671282 + putative RNA methyltransferase gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=YE1490 YE1491 YE1491 artJ artJ 1671408 1672157 - arginine-binding periplasmic protein 2 precursor gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=YE1491 YE1493 YE1493 artM artM 1672976 1673644 - arginine transport system permease protein gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=YE1493 YE1494 YE1494 artQ artQ 1673644 1674360 - arginine transport system permease protein gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=YE1494 YE1495 YE1495 artI artI 1674372 1675103 - arginine-binding periplasmic protein 1 precursor gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=YE1495 YE1496 YE1496 artP artP 1675124 1675852 - arginine transport ATP-binding protein gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=YE1496 YE1502 YE1502 YE1502 1676695 1677270 - putative lipoprotein gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=YE1502 YE1503 YE1503 YE1503 1677339 1678349 - conserved hypothetical protein gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=YE1503 YE1504 YE1504 YE1504 1678678 1680135 - putative membrane protein gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=YE1504 YE1505 YE1505 ltaA ltaA 1680132 1681151 - L-allo-threonine aldolase gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=YE1505 YE1506 YE1506 YE1506 1681290 1682177 - hypothetical protein Weakly similar to Methanosarcina acetivorans hypothetical protein Ma2745 SWALL:AAM06123 (EMBL:AE010973) (305 aa) fasta scores: E(): 6.4e-19%2C 27.83 38d in 291 aa and to Mycobacterium tuberculosis hypothetical protein Rv2751 or mtv002.16 SWALL:O33293 (EMBL:AL008967) (296 aa) fasta scores: E(): 2.8e-12%2C 26.25 38d in 240 aa gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=YE1506 YE1507 YE1507 poxB poxB 1682410 1684131 - pyruvate dehydrogenase [cytochrome] gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=YE1507 YE1509 YE1509 hcr hcr 1684399 1685421 - putative oxidoreductase gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=YE1509 YE1510 YE1510 hcp hcp 1685515 1687167 - putative prismane protein homologue gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=YE1510 YE1511 YE1511 YE1511 1687364 1688263 - putative membrane protein gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=YE1511 YE1512 YE1512 YE1512 1688517 1690181 + conserved hypothetical protein gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=YE1512 YE1513 YE1513 YE1513 1690178 1691161 - putative virulence factor gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=YE1513 YE1514 YE1514 YE1514 1691350 1692465 + putative HlyD family secretion protein gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=YE1514 YE1515 YE1515 YE1515 1692465 1694414 + putative ABC transporter ATP-binding protein gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=YE1515 YE1516 YE1516 cspD cspD 1694613 1694870 - cold shock-like protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspD cspD or cspH or b0880 or z1117 or ecs0966 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 3.1e-25%2C 84.93 38d in 73 aa%2C and to Yersinia pestis cold shock-like protein cspD or ypo1366 SWALL:Q8ZGD6 (EMBL:AJ414148) (87 aa) fasta scores: E(): 7.9e-28%2C 83.9 38d in 87 aa%2C and to Salmonella typhimurium%2Cand Salmonella typhi similar to cspA but not cold shock induced cspD or stm0943 or sty0940 SWALL:Q8XFS1 (EMBL:AE008740) (73 aa) fasta scores: E(): 9.5e-26%2C 88.88 id in 72 aa gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=YE1516 YE1517 YE1517 YE1517 1695230 1695550 + conserved hypothetical protein gene gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=YE1517 YE1518 YE1518 clpA clpA 1695576 1697852 + ATP-dependent Clp protease ATP-binding subunit gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=YE1518 YE1519 YE1519 infA infA 1698097 1698315 - translation initiation factor IF-1 gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=YE1519 YE1520 YE1520 aat aat 1698481 1699191 - putative leucyl/phenylalanyl-tRNA-protein transferase gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=YE1520 YE1521 YE1521 cydC cydC 1699549 1701273 - transport ATP-binding protein gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=YE1521 YE1522 YE1522 cydD cydD 1701276 1703042 - transport ATP-binding protein gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=YE1522 YE1523 YE1523 trxB trxB 1703317 1704291 - thioredoxin reductase gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=YE1523 YE1524 YE1524 lrp lrp 1705062 1705556 + leucine-responsive regulatory protein gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=YE1524 YE1525 YE1525 ftsK ftsK 1705678 1709298 + putative cell division protein gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=YE1525 YE1526 YE1526 lolA lolA 1709690 1710301 + putative outer-membrane lipoproteins carrier protein gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=YE1526 YE1527 YE1527 YE1527 1710309 1711652 + putative ATPase protein gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=YE1527 YE1528 YE1528 serS serS 1711824 1713116 + seryl-tRNA synthetase gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=YE1528 YE1529 YE1529 YE1529 1713540 1714559 - putative transposase for IS1667 Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 1.8e-56%2C 45.64 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.7e-50%2C 42.16 38d in 332 aa gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=YE1529 YE1530 YE1530 YE1530 1714890 1716038 + putative membrane protein gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=YE1530 YE1531 YE1531 pflA pflA 1716116 1716763 - pyruvate formate-lyase 1 activating enzyme gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=YE1531 YE1532 YE1532 pflB pflB 1716935 1719217 - formate acetyltransferase 1 gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=YE1532 YE1533 YE1533 focA focA 1719270 1720127 - putative formate transporter 1 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=YE1533 YE1534 YE1534 YE1534 1720943 1722709 - conserved hypothetical protein gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=YE1534 YE1535 YE1535 ansB ansB 1722858 1723895 + putative L-asparaginase II precursor gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=YE1535 YE1536 YE1536 YE1536 1724041 1724733 + putative inner membrane protein Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YcaP or b0906 SWALL:YCAP_ECOLI (SWALL:P75839) (230 aa) fasta scores: E(): 2.3e-52%2C 57.89 38d in 228 aa and Salmonella typhimurium putative inner membrane protein YcaP or stm0976 SWALL:Q8ZQC6 (EMBL:AE008742) (230 aa) fasta scores: E(): 3.1e-52%2C 57.01 38d in 228 aa gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=YE1536 YE1537 YE1537 serC serC 1724940 1726025 + phosphoserine aminotransferase gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=YE1537 YE1538 YE1538 aroA aroA 1726121 1727407 + 3-phosphoshikimate 1-carboxyvinyltransferase gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=YE1538 YE1539 YE1539 cmk cmk 1727647 1728339 + cytidylate kinase gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=YE1539 YE1540 YE1540 rpsA rpsA 1728508 1730181 + 30S ribosomal protein S1 gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=YE1540 YE1541 YE1541 ihfB ihfB 1730245 1730529 + integration host factor beta-subunit gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=YE1541 YE1542 YE1542 YE1542 1730866 1733151 + putative membrane protein gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=YE1542 YE1543 YE1543 msbA msbA 1733187 1734935 + probable transport ATP-binding protein gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=YE1543 YE1544 YE1544 lpxK lpxK 1734932 1735918 + tetraacyldisaccharide 4'-kinase gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=YE1544 YE1545 YE1545 YE1545 1735925 1737274 - conserved hypothetical protein gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=YE1545 YE1546 YE1546 cspE2 cspE2 1737791 1738000 + putative cold shock protein CspE2 Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein cspE or msmC or gicA or b0623 or z0769 or ecs0662 SWALL:CSPE_ECOLI (SWALL:P36997) (68 aa) fasta scores: E(): 3.1e-18%2C 72.05 38d in 68 aa and to Vibrio cholerae hypothetical protein SWALL:AAC72388 (EMBL:AF098260) (69 aa) fasta scores: E(): 9.5e-19%2C 72.46 id in 69 aa%2C and to Yersinia pestis putative cold shock protein cspE or ypo2595 SWALL:Q8ZDH3 (EMBL:AJ414153) (69 aa) fasta scores: E(): 9.5e-19%2C 71.01 38d in 69 aa gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=YE1546 YE1547 YE1547 cspE3 cspE3 1738217 1738426 + cold shock-like protein cspE3 Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspE cspE or msmC or gicA or b0623 or z0769 or ecs0662 SWALL:CSPE_ECOLI (SWALL:P36997) (68 aa) fasta scores: E(): 1.4e-11%2C 56.25 id in 64 aa%2C and to Yersinia pestis cold shock-like protein cspB or ypo1398 SWALL:Q8ZGA6 (EMBL:AJ414148) (69 aa) fasta scores: E(): 3.8e-26%2C 94.2 38d in 69 aa%2C and to Yersinia pestis putative cold shock protein cspE or ypo2595 SWALL:Q8ZDH3 (EMBL:AJ414153) (69 aa) fasta scores: E(): 4.3e-12%2C 55.88 38d in 68 aa gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=YE1547 YE1549 YE1549 YE1549 1739047 1739229 + conserved hypothetical protein gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=YE1549 YE1550 YE1550 kdsB kdsB 1739226 1739978 + putative 3-deoxy-manno-octulosonate cytidylyltransferase gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=YE1550 YE1551 YE1551 YE1551 1740168 1741061 + conserved hypothetical protein gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=YE1551 YE1552 YE1552 YE1552 1741064 1741831 - putative inner membrane protein Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YcbC or b0920 or z1267 or ecs1003 SWALL:YCBC_ECOLI (SWALL:P36565) (259 aa) fasta scores: E(): 3e-58%2C 59.6 38d in 255 aa%2C Salmonella typhi putative membrane protein Sty0992 SWALL:Q8Z7Z8 (EMBL:AL627268) (258 aa) fasta scores: E(): 2.7e-60%2C 62.15 38d in 251 aa and Vibrio cholerae hypothetical protein Vc1718 SWALL:Q9KRC4 (EMBL:AE004250) (282 aa) fasta scores: E(): 1.9e-36%2C43.95 38d in 248 aa gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=YE1552 YE1553 YE1553 smtA smtA 1742022 1742807 + putative methyltransferase gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=YE1553 YE1554 YE1554 mukF mukF 1742804 1744126 + putative killing factor protein gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=YE1554 YE1555 YE1555 mukE mukE 1744134 1744835 + conserved hypothetical protein gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=YE1555 YE1556 YE1556 mukB mukB 1744832 1749277 + cell division protein gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=YE1556 YE1557 YE1557 YE1557 1749600 1751471 + putative exported protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=YE1557 YE1558 YE1558 YE1558 1751730 1752278 + putative exported protein gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=YE1558 YE1559 YE1559 YE1559 1752337 1752984 + metallo-beta-lactamase superfamily protein gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=YE1559 YE1560 YE1560 YE1560 1753283 1754812 + putative exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa3825 SWALL:Q9HXH7 (EMBL:AE004800) (526 aa) fasta scores: E(): 1.3e-86%2C 45.82 38d in 515 aa%2C Escherichia coli hypothetical protein YcgG or b1168 SWALL:YCGG_ECOLI (SWALL:P75995) (507 aa) fasta scores: E(): 4.5e-51%2C 32.05 id in 496 aa%2C and Escherichia coli hypothetical protein YoaD or b1815 SWALL:YOAD_ECOLI (SWALL:P76261) (532 aa) fasta scores: E(): 3.8e-41%2C 31.34 38d in 504 aa gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=YE1560 YE1561 YE1561 aspC aspC 1755072 1756262 - aspartate aminotransferase gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=YE1561 YE1562 YE1562 YE1562 1756478 1757812 - transposase for insertion sequence element IS1660 Highly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 9.8e-166%2C89.54 38d in 440 aa and to Pantoea agglomerans insertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.7e-86%2C 52.42 38d in 433 aa gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=YE1562 YE1563 YE1563 ompF ompF 1757957 1759190 - mRNA gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=YE1563 YE1564 YE1564 asnS asnS 1759395 1760795 - asparaginyl-tRNA synthetase gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=YE1564 YE1565 YE1565 pncB pncB 1761052 1762257 - putative nicotinate phosphoribosyltransferase gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=YE1565 YE1567 YE1567 pepN pepN 1762849 1765464 + putative aminopeptidase N gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=YE1567 YE1568 YE1568 pyrD pyrD 1765632 1766642 + dihydroorotate dehydrogenase gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=YE1568 YE1569 YE1569 YE1569 1766941 1767498 + conserved hypothetical protein gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=YE1569 YE1570 YE1570 YE1570 1767514 1768626 - putative iron-sulfur binding protein gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=YE1570 YE1571 YE1571 YE1571 1768726 1770846 + conserved hypothetical protein gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=YE1571 YE1572 YE1572 uup uup 1770852 1772765 + ABC transporter ATP-binding protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=YE1572 YE1573 YE1573 pqiA pqiA 1772984 1774201 + putative paraquat-inducible protein A gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=YE1573 YE1574 YE1574 pqiB pqiB 1774215 1775840 + putative paraquat-inducible protein B gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=YE1574 YE1575 YE1575 YE1575 1775837 1776388 + putative lipoprotein protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=YE1575 YE1576 YE1576 YE1576 1776892 1778166 - putative 3-oxoacyl-[acyl-carrier-protein] synthase II gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=YE1576 YE1577 YE1577 YE1577 1778166 1778708 - conserved hypothetical protein Similar to Rhizobium loti hypothetical protein Mll2592 SWALL:Q98I32 (EMBL:AP003000) (182 aa) fasta scores: E(): 6.9e-31%2C 49.67 38d in 153 aa and Pseudomonas aeruginosa hypothetical protein Pa1374 SWALL:Q9I3X0 (EMBL:AE004567) (168 aa) fasta scores: E(): 1.4e-30%2C49.69 38d in 163 aa gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=YE1577 YE1578 YE1578 fabA fabA 1778898 1779416 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase gene gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=YE1578 YE1579 YE1579 YE1579 1779485 1781257 - putative Lon protease gene gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=YE1579 YE1580 YE1580 YE1580 1781447 1781902 + conserved hypothetical protein gene gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=YE1580 YE1581 YE1581 ompA ompA 1782034 1783107 - putative outer membrane porin A protein gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=YE1581 YE1582 YE1582 sulA sulA 1783465 1783971 - putative cell division inhibitor gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=YE1582 YE1583 YE1583 YE1583 1784201 1784836 + conserved hypothetical protein gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=YE1583 YE1584 YE1584 YE1584 1784873 1787008 - putative membrane protein gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=YE1584 YE1585 YE1585 YE1585 1787033 1787485 - putative membrane protein gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=YE1585 YE1586 YE1586 YE1586 1787680 1789734 + putative helicase IV gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=YE1586 YE1587 YE1587 mgsA mgsA 1789797 1790255 - methylglyoxal synthase gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=YE1587 YE1588 YE1588 YE1588 1790459 1791127 - putative exported protein gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=YE1588 YE1589 YE1589 YE1589 1791459 1791875 + conserved hypothetical protein gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=YE1589 YE1590 YE1590 YE1590 1791980 1792495 + insertion element IS1664 protein Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145)(178 aa) fasta scores: E(): 8.6e-14%2C 36.51 id in 178 aa%2C and to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1e-18%2C 40.22 38d in 174 aa gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=YE1590 YE1591 YE1591 YE1591 1792531 1793349 + putative transposase for IS1664 element Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=YE1591 YE1592 YE1592 YE1592 1793399 1793716 - conserved hypothetical protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=YE1592 YE1593 YE1593 YE1593 1793779 1794963 - conserved hypothetical protein gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=YE1593 YE1594 YE1594 YE1594 1795183 1795428 + hypothetical protein doubtful CDS with no significant database hits gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=YE1594 YE1595 YE1595 YE1595 1795441 1795806 + putative membrane protein Weakly similar to Synechocystis sp. hypothetical protein Sll0939 SWALL:P72858 (EMBL:D90901) (125 aa) fasta scores: E(): 4.4e-15%2C 45.6 38d in 125 aa and Clostridium perfringens hypothetical protein Cpe0943 SWALL:Q8XLU7 (EMBL:AP003188) (114 aa) fasta scores: E(): 2.4e-05%2C28.82 38d in 111 aa gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=YE1595 YE1596 YE1596 YE1596 1795826 1796104 + putative acylphosphatase gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=YE1596 YE1597 YE1597 YE1597 1796132 1796458 - putative sulfite reductase subunit protein gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=YE1597 YE1598 YE1598 'yfrE 'yfrE 1797221 1797400 + nitrite reductase gene remnant Similar to the very C-termini of many nitrite reductases including: Yersinia enterocolitica YfrE protein SWALL:Q56924 (EMBL:X76082) (257 aa) fasta scores: E(): 1.5e-21%2C 87.69 38d in 65 aa and Escherichia coli O157:H7 formate-dependent nitrite reductase complex NrfG or z5675 or ecs5058 SWALL:NRFG_ECO57 (SWALL:Q8X5S3) (198 aa) fasta scores: E(): 1.2e-05%2C 40 38d in 55 aa. Note this CDS appears to be a gene remnant. pseudogene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=YE1598 YE1599 YE1599 yenR yenR 1798138 1798872 + quorum-sensing transcriptional activator gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=YE1599 YE1600 YE1600 yenI yenI 1798865 1799521 - N-acylhomoserine lactone synthase gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=YE1600 YE1601 YE1601 YE1601 1799809 1800741 + exported membrane protein Similar to Salmonella typhimurium putative permease YifZ or stm4395 SWALL:Q8ZK79 (EMBL:AE008906) (308 aa) fasta scores: E(): 6.8e-79%2C 70.55 38d in 309 aa%2C and to Yersinia pestis putative membrane protein Ypo2455 SWALL:Q8ZDV0 (EMBL:AJ414152) (232 aa) fasta scores: E(): 4.8e-70%2C 90.86 38d in 219 aa gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=YE1601 YE1602 YE1602 YE1602 1800852 1802579 - putative Na+ antiporter Similar to many e.g. Escherichia coli putative Na+/H+ symporter YcgO or b1191 SWALL:YCGO_ECOLI (SWALL:P76007) (578 aa) fasta scores: E(): 6e-166%2C 75.86 id in 576 aa and Vibrio cholerae hypothetical protein Vc2703 vc2703 SWALL:Q9KNM9 (EMBL:AE004336) (581 aa) fasta scores: E(): 6.2e-133%2C 60.77 38d in 571 aa gene gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=YE1602 YE1603 YE1603 YE1603 1802899 1803240 - hypothetical protein no significant database hits gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=YE1603 YE1604 YE1604 mdoC mdoC 1803355 1804494 - osmoregulated periplasmic glucan biosynthetic protein Highly similar to Escherichia coli glucans biosynthesis protein MdoC or b1047 SWALL:MDOC_ECOLI (SWALL:P75920) (385 aa) fasta scores: E(): 5.5e-77%2C 55.08 id in 374 aa. Also similar to many other membrane proteins of undefined function e.g. Escherichia coli O157:H7 hypothetical protein YmdD or z1681 or ecs1425 SWALL:Q8X9I6 (EMBL:AE005315) (385 aa) fasta scores: E(): 1.4e-76%2C54.81 38d in 374 aa gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=YE1604 YE1605 YE1605 mdoG mdoG 1804827 1806380 + osmoregulated periplasmic glucan biosynthetic protein Similar to Escherichia coli periplasmic glucans biosynthesis protein MdoG precursor or b1048 SWALL:MDOG_ECOLI (SWALL:P33136) (511 aa) fasta scores: E(): 1.3e-167%2C 75.68 38d in 510 aa%2C and to Erwinia chrysanthemi OpgG glucan synthesis operon protein SWALL:Q9F496 (EMBL:AJ294718) (522 aa) fasta scores: E(): 1.8e-171%2C 78.71 38d in 512 aa gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=YE1605 YE1606 YE1606 mdoH mdoH 1806418 1808955 + osmoregulated periplasmic glucan biosynthetic protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 periplasmic glucans biosynthesis protein MdoH or b1049 or z1684 or ecs1427 SWALL:MDOH_ECOLI (SWALL:P33137) (847 aa) fasta scores: E(): 0%2C 74.22 38d in 838 aa and to Erwinia chrysanthemi OpgH glucan synthesis operon protein SWALL:Q9F495 (EMBL:AJ294718) (850 aa) fasta scores: E(): 0%2C 74.91 38d in 837 aa gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=YE1606 YE1609 YE1609 YE1609 1810022 1811557 - putative peptide transport protein Similar to many including: Lactococcus lactis di-/tripeptide transporter DtpT or ll0702 SWALL:DTPT_LACLA (SWALL:P36574) (497 aa) fasta scores: E(): 8.3e-54%2C 36.43 id in 516 aa and to Listeria monocytogenes hypothetical protein Lmo0555 SWALL:Q8Y9H3 (EMBL:AL591975) (492 aa) fasta scores: E(): 6.6e-58%2C 37.41 38d in 457 aa gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=YE1609 YE1610 YE1610 YE1610 1811991 1813235 - putative MFS-family transport protein Similar to many MFS-family membrane transport proteins including: Salmonella typhimurium putative MFS family transport protein YceE or Stm1154 SWALL:Q8ZQ25 (EMBL:AE008750) (404 aa) fasta scores: E(): 5.9e-124%2C81.54 38d in 401 aa and to Lactococcus lactis multi-drug resistance efflux pump PmrA or ll0666 SWALL:PMRA_LACLA (SWALL:P58120) (405 aa) fasta scores: E(): 4.8e-69%2C 46.17 id in 405 aa gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=YE1610 YE1611 YE1611 YE1611 1813531 1813965 - putative membrane protein Weakly similar to several proteins of undefined function e.g. Vibrio cholerae hypothetical protein Vca1019 SWALL:Q9KKT1 (EMBL:AE004428) (148 aa) fasta scores: E(): 3.7e-05%2C 32.6 38d in 138 aa gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=YE1611 YE1612 YE1612 htrB htrB 1814333 1815265 - putative lipid A biosynthesis lauroyl acyltransferase Similar to many proteins involved in LPS core biosynthesis including: Escherichia coli%2C and Escherichia coli O157:H7 lipid A biosynthesis lauroyl acyltransferase HtrB or waam or b1054 or z1690 or ecs1432 SWALL:HTRB_ECOLI (SWALL:P24187) (306 aa) fasta scores: E(): 1.6e-90%2C 67.21 id in 302 aa and Haemophilus influenzae lipid a biosynthesis lauroyl acyltransferase HtrB or waam or hi1527 SWALL:HTRB_HAEIN (SWALL:P45239) (311 aa) fasta scores: E(): 1.3e-67%2C 52.86 38d in 314 aa gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=YE1612 YE1613 YE1613 ttrR ttrR 1815509 1816012 - tetrathionate reductase complex: two-component system response regulator Similar to many two-component system response regulators including: Salmonella typhimurium%2C Salmonella enterica subsp. enterica serovar Typhimurium%2C and Salmonella typhi tetrathionate reductase complex response regulator TtrR or stm1387 or sty1733 SWALL:Q9Z4T0 (EMBL:AJ224978) (206 aa) fasta scores: E(): 5.7e-32%2C59.37 38d in 160 aa and to Bradyrhizobium japonicum transcriptional regulatory protein FixJ SWALL:FIXJ_BRAJA (SWALL:P23221) (205 aa) fasta scores: E(): 7.3e-18%2C 44.21 id in 147 aa. Note the regulatory partner histidine kinase is adjacent to this CDS%2C YE1614. gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=YE1613 YE1614 YE1614 ttrS ttrS 1816071 1817831 - tetrathionate reductase complex: sensory transduction histidine kinase Similar to many two-component system histidine kinases e.g. Salmonella typhimurium tetrathionate reductase complex: sensory transduction histidine kinase TtrS or stm1386 SWALL:Q8ZPP6 (EMBL:AE008760) (592 aa) fasta scores: E(): 3.5e-117%2C 52.73 38d in 567 aa. Note the regulatory partner esponse regulator is adjacent to this CDS%2C YE1613. gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=YE1614 YE1615 YE1615 ttrB ttrB 1817970 1818704 + tetrathionate reductase subunit B Similar to Salmonella typhimurium%2C Salmonella enterica subsp. enterica serovar Typhimurium%2C and Salmonella typhi tetrathionate reductase subunit B TtrB or stm1385 or sty1736 SWALL:Q9Z4S8 (EMBL:AJ224978) (250 aa) fasta scores: E(): 2.4e-73%2C 74.59 38d in 244 aa%2C and to Pasteurella multocida tetrathionate reductase subunit B TtrB or pm0723 SWALL:Q9CMT5 (EMBL:AE006109) (245 aa) fasta scores: E(): 4.1e-66%2C 67.5 38d in 240 aa gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=YE1615 YE1616 YE1616 ttrC ttrC 1818701 1819786 + tetrathionate reductase subunit C Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium tetrathionate reductase subunit C TtrC or stm1384 SWALL:Q9Z4S7 (EMBL:AJ224978) (340 aa) fasta scores: E(): 9.1e-52%2C46.47 38d in 355 aa and to Pasteurella multocida TtrC or pm0722 SWALL:Q9CMT6 (EMBL:AE006109) (349 aa) fasta scores: E(): 2.5e-30%2C 39.42 38d in 350 aa gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=YE1616 YE1617 YE1617 ttrA ttrA 1819779 1822862 + tetrathionate reductase subunit A Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium tetrathionate reductase subunit A TtrA or stm1383 SWALL:Q9Z4S6 (EMBL:AJ224978) (1020 aa) fasta scores: E(): 0%2C 65.59 38d in 1026 aa and to Pasteurella multocida TtrA or pm0721 SWALL:Q9CMT7 (EMBL:AE006109) (1029 aa) fasta scores: E(): 0%2C 55.12 38d in 1025 aa gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=YE1617 YE1619 YE1619 YE1619 1823339 1824391 + conserved hypothetical protein gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=YE1619 YE1620 YE1620 YE1620 1824492 1825553 + putative membrane protein gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=YE1620 YE1621 YE1621 YE1621 1826063 1826647 - putative LuxR-family regulatory protein gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=YE1621 YE1622 YE1622 solA solA 1826906 1828027 - putative sarcosine oxidase gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=YE1622 YE1623 YE1623 YE1623 1828291 1828545 - conserved hypothetical protein gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=YE1623 YE1624 YE1624 dinI dinI 1828908 1829153 - DNA-damage-inducible protein I gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=YE1624 YE1625 YE1625 pyrC pyrC 1829270 1830316 - dihydroorotase gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=YE1625 YE1626 YE1626 YE1626 1830565 1830852 + conserved hypothetical protein gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=YE1626 YE1627 YE1627 rne rne 1830922 1834452 - ribonuclease E gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=YE1627 YE1628 YE1628 rluC rluC 1835029 1835988 + ribosomal large subunit pseudouridine synthase C gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=YE1628 YE1629 YE1629 YE1629 1836039 1836620 - conserved hypothetical protein gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=YE1629 YE1630 YE1630 YE1630 1836762 1837292 + conserved hypothetical protein gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=YE1630 YE1631 YE1631 rpmF rpmF 1837298 1837465 + 50S ribosomal protein L32 gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=YE1631 YE1632 YE1632 plsX plsX 1837502 1838536 + fatty acid/phospholipid synthesis protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=YE1632 YE1633 YE1633 fabH fabH 1838543 1839508 + 3-oxoacyl-[acyl-carrier-protein] synthase III gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=YE1633 YE1634 YE1634 fabD fabD 1839562 1840491 + malonyl CoA-acyl carrier protein transacylase gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=YE1634 YE1635 YE1635 fabG fabG 1840505 1841239 + 3-oxoacyl-[acyl-carrier protein] reductase gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=YE1635 YE1636 YE1636 acpP acpP 1841393 1841629 + acyl carrier protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=YE1636 YE1637 YE1637 fabF fabF 1841724 1842962 + 3-oxoacyl-[acyl-carrier-protein] synthase II gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=YE1637 YE1638 YE1638 pabC pabC 1843200 1844024 + 4-amino-4-deoxychorismate lyase gene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=YE1638 YE1639 YE1639 yceG yceG 1844086 1845111 + putative exported protein gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=YE1639 YE1640 YE1640 tmk tmk 1845101 1845739 + thymidylate kinase gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=YE1640 YE1641 YE1641 holB holB 1845739 1846746 + DNA polymerase III%2C delta' subunit gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=YE1641 YE1642 YE1642 YE1642 1846761 1847570 + putative deoxyribonuclease gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=YE1642 YE1643 YE1643 ptsG ptsG 1847878 1849311 + PTS system%2C glucose-specific IIBC component gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=YE1643 YE1643A YE1643A ogr ogr 1849385 1849729 - phage late control protein gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=YE1643A YE1644 YE1644 gpD gpD 1849792 1850901 - regulator of late gene expression Similar to Bacteriophage P2 regulator of late gene expression%2C protein D SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 3.4e-45%2C 47.98 38d in 373 aa%2C and to Salmonella typhi putative regulator of late gene expression Sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 3.9e-71%2C 55.21 38d in 355 aa gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=YE1644 YE1645 YE1645 fI fI 1851043 1852221 + major tail sheath protein Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 9e-86%2C 54.82 38d in 394 aa%2C and to Bacteriophage 186 similar tail sheath protein FI J SWALL:Q37844 (EMBL:U32222) (392 aa) fasta scores: E(): 9.8e-85%2C 53.7 38d in 391 aa gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=YE1645 YE1646 YE1646 fII fII 1852233 1852748 + major tail tube protein Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 1.6e-29%2C 51.46 38d in 171 aa%2C and to Bacteriophage 186 similar to p2 tail tube protein FII I SWALL:Q37845 (EMBL:U32222) (173 aa) fasta scores: E(): 1.7e-28%2C 49.42 id in 174 aa gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=YE1646 YE1647 YE1647 gpE gpE 1852764 1853087 + putative phage tail protein Similar to Bacteriophage P2 phage tail protein gpE SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 6.4e-10%2C 43.67 38d in 87 aa and to Salmonella typhi putative phage tail protein Sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 7e-10%2C 47.67 38d in 86 aa gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=YE1647 YE1648 YE1648 gpT gpT 1853219 1856430 + bacteriophage tail fibre protein Similar to many phage proteins including: Bacteriophage P2 gpT SWALL:O64314 (EMBL:AF063097) (815 aa) fasta scores: E(): 1.2e-13%2C 22.39 38d in 853 aa%2CSalmonella typhi hypothetical protein Sty3700 or SWALL:Q8XFL4 (EMBL:AL627279) (1025 aa) fasta scores: E(): 1.1e-94%2C 46.88 38d in 900 aa and to Salmonella typhimurium fels-2 prophage:similar to orfG protein in phage 186 Stm2697 SWALL:Q8ZMV3 (EMBL:AE008823) (935 aa) fasta scores: E(): 1.6e-88%2C 42.18 38d in 998 aa. this CDS carries a single frameshift mutation pseudogene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=YE1648 YE1649 YE1649 gpT gpT 1855024 1855101 + pseudogene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=YE1649 YE1650 YE1650 gpU gpU 1856433 1856843 + putative phage tail protein Similar to many including: Salmonella typhi putative phage tail protein Sty3701 SWALL:Q8XF01 (EMBL:AL627279) (161 aa) fasta scores: E(): 2.1e-27%2C56.71 38d in 134 aa%2C Bacteriophage P2 gpU SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 1.3e-23%2C 50 id in 134 aa and to bacteriophage phi CTX orf26 SWALL:Q9ZXJ9 (EMBL:AB008550) (146 aa) fasta scores: E(): 4.4e-22%2C 47.76 38d in 134 aa gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=YE1650 YE1651 YE1651 YE1651 1856945 1857232 + hypothetical phage protein no significant database hits gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=YE1651 YE1652 YE1652 YE1652 1857369 1857551 - hypothetical phage protein no significant database hits gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=YE1652 YE1653 YE1653 YE1653 1857643 1857891 - hypothetical phage protein no significant database hits gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=YE1653 YE1654 YE1654 YE1654 1857891 1858259 + hypothetical phage protein no significant database hits gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=YE1654 YE1655 YE1655 YE1655 1858406 1859353 - putative transposase Similar to many proteins%2C of undefined function%2Cthat are thought to represent a novel family of transposases%2C including: Escherichia coli hypothetical protein YhgA or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 4.7e-57%2C 54.54 38d in 297 aa%2CYersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 6.4e-106%2C85.58 38d in 319 aa%2C Salmonella typhimurium putative transposase Stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 2.9e-61%2C 51.76 38d in 311 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 6.3e-54%2C 51.17 38d in 297 aa. Additional copies of this element are represented by YE1924%2C YE1921 and YE3497. There are also two partial sequences represented by YE1656 and YE1925. gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=YE1655 YE1656 YE1656 YE1656 1859520 1859696 - putative transposase (remnant) This CDS appears to be a gene remnant. Similar to the very C-termini of many proteins%2C of undefined function%2C that are thought to represent a novel family of transposases%2C including: Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 8e-06%2C 50 38d in 62 aa%2C Yersinia pestis putative transposase Y1072 or Ypmt1.71 SWALL:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 0.023%2C 40.9 id in 66 aa%2C Escherichia coli hypothetical protein YfaD or b2244 SWALL:YFAD_ECOLI (SWALL:P37014) (299 aa) fasta scores: E(): 0.099%2C 41.07 38d in 56 aa pseudogene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=YE1656 YE1657 YE1657 YE1657 1860141 1860461 - hypothetical phage protein no significant database hits gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=YE1657 YE1658 YE1658 YE1658 1860804 1861208 - conserved hypothetical phage protein Similar to Bacteroides nodosus virulence-associated protein C VapC SWALL:Q46557 (EMBL:L31763) (135 aa) fasta scores: E(): 4e-19%2C 47.32 38d in 131 aa%2C and to Haemophilus influenzae hypothetical protein Hi0947 hi0947 SWALL:Y947_HAEIN (SWALL:P71363) (132 aa) fasta scores: E(): 1.1e-32%2C 65.15 38d in 132 aa%2C and to Rhizobium meliloti NtrR protein ntrR or ntrR1 or r02418 or smc01521 SWALL:Q9L380 (EMBL:AJ277847) (134 aa) fasta scores: E(): 7.1e-12%2C 42.1 38d in 133 aa gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=YE1658 YE1659 YE1659 YE1659 1861208 1861441 - hypothetical phage protein Similar to many proteins of unknown function including: Haemophilus influenzae hypothetical protein Hi0948 SWALL:Y948_HAEIN (SWALL:Q57120) (77 aa) fasta scores: E(): 1e-13%2C 50.66 38d in 75 aa and Rhizobium meliloti hypothetical protein R02686 or smc00686 SWALL:Q92MD9 (EMBL:AL591791) (77 aa) fasta scores: E(): 6.3e-11%2C 42.85 38d in 77 aa gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=YE1659 YE1661 YE1661 YE1661 1861923 1862537 - putative phage tail fiber assembly protein Similar to Escherichia coli tail fiber assembly protein homolog from lambdoid prophage E14 TfaE or b1156 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 1.3e-20%2C 36 38d in 200 aa and to Yersinia pestis lambda tail fiber assembly protein G Y1053 or Ypmt1.03C SWALL:O68721 (EMBL:AF074611) (202 aa) fasta scores: E(): 9.5e-21%2C 38.74 38d in 191 aa gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=YE1661 YE1662 YE1662 gpH gpH 1862537 1863919 - probable variable tail fibre protein Similar to Salmonella typhi probable variable tail fibre protein Sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 1.6e-38%2C 43.83 38d in 511 aa%2C and to Salmonella typhimurium fels-2 prophage: similar to tail fiber protein in phage P2 Stm2706 SWALL:Q8ZMU5 (EMBL:AE008823) (524 aa) fasta scores: E(): 2.2e-38%2C62.22 38d in 180 aa gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=YE1662 YE1663 YE1663 gpI gpI 1863916 1864458 - phage tail protein Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 8.4e-50%2C 66.47 38d in 173 aa%2C and to Bacteriophage 186 orf38 SWALL:Q37841 (EMBL:U32222) (176 aa) fasta scores: E(): 2.2e-47%2C 64.91 38d in 171 aa gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=YE1663 YE1664 YE1664 gpJ gpJ 1864451 1865359 - baseplate assembly protein Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 8.8e-75%2C 69.2 38d in 302 aa%2C Bacteriophage 186 P2 J homolog L SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 2.9e-75%2C 69.53 38d in 302 aa and Salmonella typhi phage baseplate assembly protein Sty3689 SWALL:Q8Z344 (EMBL:AL627279) (302 aa) fasta scores: E(): 8.8e-75%2C 69.86 38d in 302 aa gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=YE1664 YE1665 YE1665 gpW gpW 1865356 1865706 - baseplate assembly protein Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 1.1e-18%2C 48.18 38d in 110 aa%2C Bacteriophage 186 protein M SWALL:O80315 (EMBL:U32222) (115 aa) fasta scores: E(): 5.9e-20%2C 50.9 38d in 110 aa and Salmonella typhi phage baseplate assembly protein Sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 2.1e-18%2C 48.21 38d in 112 aa gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=YE1665 YE1666 YE1666 gpV gpV 1865703 1866350 - baseplate assembly protein Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 4.3e-32%2C 46.6 38d in 206 aa%2C Bacteriophage 186 orf32 SWALL:O80314 (EMBL:U32222) (213 aa) fasta scores: E(): 5.3e-34%2C 48.8 38d in 209 aa and to Salmonella typhi putative phage baseplate assembly protein Sty3687 SWALL:Q8Z346 (EMBL:AL627279) (192 aa) fasta scores: E(): 4e-16%2C 37.37 38d in 206 aa gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=YE1666 YE1667 YE1667 YE1667 1866458 1867045 - putative Fic-related phage protein Similar to Escherichia coli cell division/filamentation protein Fic or b3361 SWALL:FIC_ECOLI (SWALL:P20605) (200 aa) fasta scores: E(): 1.8e-26%2C 37.5 38d in 192 aa and to Salmonella typhimurium cell filamentation protein Fic or stm3470 SWALL:FIC_SALTY (SWALL:P20751) (200 aa) fasta scores: E(): 3.2e-29%2C 40.1 id in 192 aa gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=YE1667 YE1669 YE1669 gpS gpS 1867324 1867941 - tail completion protein Similar to many bacteriophage tail completion proteins: Bacteriophage P2 tail completion protein S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.055%2C 28.92 38d in 204 aa%2C Salmonella typhi putative phage tail protein Sty3686 SWALL:Q8Z347 (EMBL:AL627279) (148 aa) fasta scores: E(): 0.003%2C 26.23 38d in 202 aa and to Salmonella typhimurium fels-2 prophage tail completion protein SWALL:Q8ZMU0 (EMBL:AE008823) (148 aa) fasta scores: E(): 0.0053%2C 27.08 38d in 192 aa gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=YE1669 YE1670 YE1670 gpR gpR 1867984 1868454 - tail completion protein r Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 1.6e-19%2C 40.26 38d in 154 aa and to Salmonella typhimurium%2C and Salmonella typhi fels-2 prophage: tail completion proteins stm2712 or sty4617 SWALL:Q8XF29 (EMBL:AE008823) (143 aa) fasta scores: E(): 3.1e-21%2C46.66 38d in 135 aa gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=YE1670 YE1671 YE1671 lysB lysB 1868553 1868978 - phage lysin Similar to Bacteriophage P2 protein LysB SWALL:LYSB_BPP2 (SWALL:P51770) (141 aa) fasta scores: E(): 2e-07%2C 37.39 38d in 123 aa and Salmonella typhimurium fels-2 prophage: similar to lysis protein Stm2714 SWALL:Q8ZMT8 (EMBL:AE008823) (142 aa) fasta scores: E(): 1.4e-13%2C 41.79 38d in 134 aa gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=YE1671 YE1672 YE1672 YE1672 1868983 1869378 - putative phagelysin Similar to many endolysins phage related: including: Listeria innocua phagelysin Cply2438 SWALL:Q48583 (EMBL:X89234) (287 aa) fasta scores: E(): 0.022%2C 30.95 38d in 126 aa and to Bacteriophage A500 L-alanyl-D-glutamate peptidase Ply500 SWALL:AEPE_BPA50 (SWALL:Q37979) (289 aa) fasta scores: E(): 0.029%2C 30.15 id in 126 aa gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=YE1672 YE1672A YE1672A YE1672A 1869365 1869751 - putative phage holin gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=YE1672A YE1673 YE1673 gpX gpX 1869789 1869992 - phage tail protein Similar to many P2-family bacteriophage tail proteins including: Bacteriophage P2 tail protein X SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 1.4e-10%2C 55.88 38d in 68 aa%2C Salmonella typhi putative phage tail protein Sty4622 SWALL:Q8Z1F2 (EMBL:AL627283) (67 aa) fasta scores: E(): 6.1e-17%2C 65.67 38d in 67 aa and Salmonella typhimurium fels-2 prophage: similar to gpx in phage p2 stm2717 SWALL:Q8ZMT5 (EMBL:AE008823) (67 aa) fasta scores: E(): 1.6e-16%2C 64.17 38d in 67 aa gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=YE1673 YE1674 YE1674 gpL gpL 1869993 1870475 - phage head completion/stabilization protein Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-17%2C 39.72 id in 146 aa%2C and to Salmonella typhi putative capsid completion protein Sty4623 SWALL:Q8Z1F1 (EMBL:AL627283) (154 aa) fasta scores: E(): 1.8e-21%2C 46.05 38d in 152 aa gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=YE1674 YE1675 YE1675 gpM gpM 1870596 1871306 - phage terminase/endonuclease subunit Similar to Bacteriophage P2 terminase%2C endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 1.3e-22%2C 39.36 38d in 221 aa and Ralstonia solanacearum probable bacteriophage protein rsc1936 or rs03505 SWALL:Q8XY27 (EMBL:AL646067) (240 aa) fasta scores: E(): 9.9e-28%2C 40.34 38d in 233 aa gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=YE1675 YE1676 YE1676 gpN gpN 1871335 1872381 - major phage capsid protein precursor Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 2.5e-61%2C 49.13 38d in 348 aa and Bacteriophage PhiD5 major capsid protein N SWALL:Q94MF9 (EMBL:AJ298557) (357 aa) fasta scores: E(): 1.2e-62%2C49.42 38d in 348 aa gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=YE1676 YE1677 YE1677 gpO gpO 1872414 1873268 - putative phage capsid scaffolding protein Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 4.8e-36%2C 42.7 38d in 281 aa and to Bacteriophage 299 capsid scaffolding protein O SWALL:Q94MK3 (EMBL:AJ298566) (284 aa) fasta scores: E(): 4.2e-36%2C 43.61 38d in 282 aa gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=YE1677 YE1678 YE1678 gpP gpP 1873426 1875144 + probable terminase%2C ATPase subunit Similar to Bacteriophage HP1 probable terminase%2CATPase subunit SWALL:VPP_BPHP1 (SWALL:P51718) (607 aa) fasta scores: E(): 5.1e-65%2C 37.05 38d in 591 aa%2CSalmonella typhi probable terminase subunit Sty4627 SWALL:Q8Z1E7 (EMBL:AL627283) (588 aa) fasta scores: E(): 1.8e-98%2C 54.18 38d in 574 aa and Salmonella typhimurium fels-2 prophage: similar to gpP%2C ATP charging%2C in phage P2 Stm2722 SWALL:Q8ZMT0 (EMBL:AE008824) (588 aa) fasta scores: E(): 3.7e-98%2C 54 38d in 574 aa gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=YE1678 YE1679 YE1679 gpQ gpQ 1875147 1876187 + putative portal vertex protein Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 5e-70%2C 52.52 38d in 337 aa and Salmonella typhi probable capsid portal protein Sty4628 SWALL:Q8Z1E6 (EMBL:AL627283) (348 aa) fasta scores: E(): 7.6e-82%2C58.65 38d in 341 aa gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=YE1679 YE1681 YE1681 YE1681 1876566 1877924 - prophage encoded DNA modification methylase Similar to many DNA methylases including: Desulfovibrio desulfuricans modification methylase DdeI or DdeM SWALL:MTD1_DESDN (SWALL:P05302) (415 aa) fasta scores: E(): 1.3e-13%2C 32.27 38d in 440 aa and Nostoc sp. ATCC 29411 modification methylase NspiM SWALL:Q9ZHP3 (EMBL:AF056036) (397 aa) fasta scores: E(): 3.9e-13%2C30.46 38d in 430 aa%3B deleted EC_number 2.1.1.73 gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=YE1681 YE1682 YE1682 YE1682 1878009 1878452 - hypothetical phage protein no significant database hits gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=YE1682 YE1683 YE1683 YE1683 1878468 1879427 - putative prophage encoded two-component system response regulator Weakly similar to a proposed two-component system response regulator from Streptococcus agalactiae DltR SWALL:Q8VM69 (EMBL:AJ291784) (224 aa) fasta scores: E(): 0.068%2C 22.5 38d in 200 aa gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=YE1683 YE1684 YE1684 YE1684 1879424 1881802 - putative prophage encoded two-component system histidine kinase gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=YE1684 YE1686 YE1686 gpA gpA 1882132 1884420 - phage replication protein Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 7.4e-66%2C 34.53 38d in 779 aa and to Bacteriophage 186 replication gene A protein A or cp87 SWALL:VPA_BP186 (SWALL:P41064) (694 aa) fasta scores: E(): 2.8e-89%2C 43.82 38d in 696 aa gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=YE1686 YE1687 YE1687 YE1687 1884420 1884644 - conserved hypothetical phage protein Similar to Bacteriophage P2 hypothetical protein SWALL:YO82_BPP2 (SWALL:Q06424) (74 aa) fasta scores: E(): 3.5e-11%2C 48.64 38d in 74 aa and to Bacteriophage 186 hypothetical protein cp80 SWALL:CP80_BP186 (SWALL:P41059) (75 aa) fasta scores: E(): 1.8e-11%2C 50 38d in 74 aa. Also weakly similar to Escherichia coli plasmid R100 Zinc-finger protein TraR SWALL:O32533 (EMBL:AF005044) (73 aa) fasta scores: E(): 1.6e-05%2C 36.11 38d in 72 aa gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=YE1687 YE1688 YE1688 YE1688 1884644 1884871 - conserved hypothetical phage protein Similar to Bacteriophage P2 hypothetical protein orf80 SWALL:YO80_BPP2 (SWALL:Q06422) (74 aa) fasta scores: E(): 0.9%2C 35.08 38d in 57 aa%2C Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 Stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.002%2C 34.24 38d in 73 aa and Salmonella typhi hypothetical protein Sty4639 SWALL:Q8Z1D7 (EMBL:AL627283) (77 aa) fasta scores: E(): 0.0073%2C 32.87 38d in 73 aa gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=YE1688 YE1689 YE1689 YE1689 1884949 1885197 - hypothetical phage protein no significant database hits gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=YE1689 YE1689A YE1689A YE1689A 1885233 1885514 - hypothetical phage protein gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=YE1689A YE1690 YE1690 YE1690 1885529 1885795 - hypothetical phage DNA-binding protein no significant database hits gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=YE1690 YE1691 YE1691 cI cI 1885885 1886184 + phage repressor protein Similar to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 1.6e-11%2C 38.38 38d in 99 aa and to Bacteriophage WPhi repressor protein C SWALL:Q9T1J6 (EMBL:AJ245959) (97 aa) fasta scores: E(): 2.8e-16%2C 54.83 38d in 93 aa gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=YE1691 YE1692 YE1692 int int 1886248 1887231 + P2-like phage integrase Similar to Bacteriophage P2 Integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 4.3e-57%2C 46.27 38d in 322 aa and Bacteriophage 186 Integrase inT SWALL:VINT_BP186 (SWALL:P06723) (336 aa) fasta scores: E(): 1.4e-39%2C 46.86 38d in 335 aa gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=YE1692 YE1693 YE1693 YE1693 1887316 1888287 + hypothetical phage protein no significant database hits gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=YE1693 YE1694 YE1694 tnp tnp 1888605 1889063 + transposase for IS1541 Previously sequenced as Yersinia enterocolitica IS1541 element transposase Tnp SWALL:Q9X9G7 (EMBL:AJ238016) (152 aa) fasta scores: E(): 1.2e-66%2C 100 id in 152 aa. Also similar to many other IS200-like transposases e.g. Salmonella typhimurium%2C and Salmonella typhi transposase for insertion sequence element IS200 SWALL:T200_SALTY (SWALL:Q57334) (152 aa) fasta scores: E(): 9.6e-64%2C 94.73 38d in 152 aa gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=YE1694 YE1695 YE1695 YE1695 1889227 1890057 - hypothetical protein no significant database hits gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=YE1695 YE1696 YE1696 YE1696 1890125 1891669 - putative ABC transport protein%2C ATP-binding component Similar to several secretion proteins including: Escherichia coli probable microcin h47 secretion ATP-binding protein MchF SWALL:MCHF_ECOLI (SWALL:Q9EXN5) (698 aa) fasta scores: E(): 4.1e-62%2C 40.39 38d in 453 aa and to Pseudomonas aeruginosa probable toxin transporter Pa4143 SWALL:Q9HWN8 (EMBL:AE004831) (719 aa) fasta scores: E(): 1.2e-72%2C 47.27 38d in 459 aa gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=YE1696 YE1697 YE1697 YE1697 1891740 1892450 - putative exported protein Weakly similar to several proposed secretion apparatus proteins including: Pseudomonas aeruginosa probable secretion protein Pa4142 SWALL:Q9HWN9 (EMBL:AE004831) (418 aa) fasta scores: E(): 1.4e-06%2C21.86 38d in 215 aa and to Escherichia coli microcin h47 secretion protein MchE SWALL:MCHE_ECOLI (SWALL:Q9EXN6) (424 aa) fasta scores: E(): 0.00024%2C 19.24 38d in 213 aa gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=YE1697 YE1698 YE1698 YE1698 1892594 1893847 - conserved hypothetical protein Similar to many proteins of undefined function including: Streptomyces coelicolor hypothetical protein Sco5273 or 2sc7g11.35 SWALL:Q9F3J2 (EMBL:AL391763) (620 aa) fasta scores: E(): 2.6e-23%2C 25.33 38d in 375 aa and to Pasteurella multocida hypothetical protein Pm0600 SWALL:Q9CN44 (EMBL:AE006096) (377 aa) fasta scores: E(): 3.5e-18%2C 26.4 38d in 375 aa gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=YE1698 YE1699 YE1699 YE1699 1894430 1896220 - putative ABC-transport protein%2C solute binding component Similar to Salmonella typhimurium putative dipeptide/oligopeptide/nickel ABC-type transport systems%2Cperiplasmic component stm3860 SWALL:Q8ZKX2 (EMBL:AE008880) (585 aa) fasta scores: E(): 2.2e-112%2C 61.17 38d in 595 aa%2Cand to Yersinia pestis hypothetical protein Ypo0524 ypo0524 SWALL:Q8ZIH3 (EMBL:AJ414143) (553 aa) fasta scores: E(): 1.3e-62%2C 41.34 38d in 595 aa gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=YE1699 YE1700 YE1700 YE1700 1896368 1897189 + putative shikimate dehydrogenase gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=YE1700 YE1701 YE1701 YE1701 1897265 1897618 + conserved hypothetical protein gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=YE1701 YE1702 YE1702 ycfL ycfL 1897655 1898044 + putative lipoprotein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=YE1702 YE1703 YE1703 YE1703 1898186 1898680 + putative lipoprotein gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=YE1703 YE1704 YE1704 YE1704 1898898 1899581 + conserved hypothetical protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=YE1704 YE1705 YE1705 ycfO ycfO 1899737 1900762 + beta-hexosaminidase gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=YE1705 YE1706 YE1706 YE1706 1900765 1901307 + conserved hypothetical protein gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=YE1706 YE1707 YE1707 ndh ndh 1901695 1902999 + NADH dehydrogenase gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=YE1707 YE1708 YE1708 ycfJ ycfJ 1903698 1904237 + putative exported protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=YE1708 YE1709 YE1709 mfd mfd 1904376 1907822 - transcription-repair coupling factor gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=YE1709 YE1710 YE1710 lolC lolC 1908143 1909345 + lipoprotein releasing system%2C transmembrane protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=YE1710 YE1711 YE1711 lolD lolD 1909338 1910042 + lipoprotein releasing system%2C ATP-binding protein gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=YE1711 YE1712 YE1712 lolE lolE 1910054 1911301 + lipoprotein releasing system%2C transmembrane protein gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=YE1712 YE1713 YE1713 YE1713 1911367 1912278 + conserved hypothetical protein gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=YE1713 YE1714 YE1714 cobB cobB 1912439 1913275 + putative Sir2 family protein gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=YE1714 YE1715 YE1715 pepT pepT 1913580 1914815 + peptidase T gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=YE1715 YE1716 YE1716 YE1716 1915015 1916136 - conserved hypothetical protein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=YE1716 YE1717 YE1717 phoQ phoQ 1916221 1917675 - sensor protein kinase gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=YE1717 YE1718 YE1718 phoP phoP 1917681 1918352 - response regulator protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=YE1718 YE1719 YE1719 YE1719 1918424 1919047 - putative lipoprotein gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=YE1719 YE1720 YE1720 purB purB 1919235 1920605 - adenylosuccinate lyase gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=YE1720 YE1721 YE1721 YE1721 1920631 1921257 - conserved hypothetical protein gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=YE1721 YE1722 YE1722 trmU trmU 1921382 1922503 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=YE1722 YE1723 YE1723 YE1723 1922690 1923136 - conserved hypothetical protein gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=YE1723 YE1724 YE1724 ymfC ymfC 1923129 1923755 - putative pseudouridine synthase gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=YE1724 YE1725 YE1725 icdA icdA 1923886 1925139 + isocitrate dehydrogenase [NADP] gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=YE1725 YE1726 YE1726 YE1726 1925672 1926532 + hypothetical protein Weakly similar in parts to Haemophilus influenzae putative glycosyl transferase Hi1696 SWALL:YG96_HAEIN (SWALL:Q48214) (294 aa) fasta scores: E(): 0.046%2C 33.33 id in 87 aa gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=YE1726 YE1727 YE1727 YE1727 1926684 1927904 + putative inner membrane protein Weakly similar to Pseudomonas putida O-antigen polymerase WzY SWALL:Q9KKE4 (EMBL:AF109736) (391 aa) fasta scores: E(): 0.007%2C 24.89 38d in 241 aa and to Salmonella typhi O-antigen ligase Waal or Sty4082 SWALL:Q8Z2F8 (EMBL:AL627280) (404 aa) fasta scores: E(): 0.17%2C 22.45 id in 383 aa gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=YE1727 YE1728 YE1728 YE1728 1928346 1928871 + putative sugar permease (pseudogene) Similar to the very N-terminus and C-terminus of many sugar permeases including: Klebsiella pneumoniae lactose permease LacY SWALL:LACY_KLEPN (SWALL:P18817) blast scores: E(): 2e-15%2C score: 84 51 38d and Enterobacter cloacae MelY SWALL:P96517 (EMBL:AB000622) blast scores: E(): 2e-19%2C score: 97 53 38d. This CDS has undergone a deletion event removing much of the central coding region pseudogene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=YE1728 YE1729 YE1729 YE1729 1928860 1929341 - putative transcriptional regulatory protein (partial) This CDS appears to be a gene remnant that is similar%2C in parts%2C to many repressor proteins including: Escherichia coli sucrose operon repressor CscR SWALL:CSCR_ECOLI (SWALL:P40715) (331 aa) fasta scores: E(): 9.4e-26%2C 47.91 38d in 144 aa and to Yersinia pestis sucrose operon repressor LacI-family Ypo1642 SWALL:Q8ZFQ1 (EMBL:AJ414149) (347 aa) fasta scores: E(): 4.3e-48%2C 85.4 id in 137 aa. This CDS carries a framshift mutation and has undergone deletion event. pseudogene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=YE1729 YE1730 YE1730 YE1730 1929451 1929711 - conserved hypothetical protein gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=YE1730 YE1731 YE1731 aer aer 1929885 1931444 - putative methyl-accepting chemotaxis protein gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=YE1731 YE1732 YE1732 umuC umuC 1932015 1933283 - putative uv protection and mutation protein Similar to Escherichia coli uv protection and mutation protein UmuC or b1184 SWALL:UMUC_ECOLI (SWALL:P04152) (422 aa) fasta scores: E(): 7e-106%2C 64.02 id in 417 aa and to Salmonella typhimurium UmuC protein or stm1997 SWALL:UMUC_SALTY (SWALL:P22494) (422 aa) fasta scores: E(): 1.8e-106%2C 65.22 38d in 417 aa gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=YE1732 YE1733 YE1733 umuD umuD 1933283 1933696 - putative uv protection and mutation protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 uv protection and mutation protein UmuD protein or b1183 or z1946 or ecs1678 SWALL:UMUD_ECOLI (SWALL:P04153) (139 aa) fasta scores: E(): 7e-17%2C 40.9 38d in 132 aa%2CEscherichia coli%2C and Providencia rettgeri RumA(r391) SWALL:Q44053 (EMBL:U13633) (149 aa) fasta scores: E(): 8.2e-18%2C 48.71 38d in 117 aa%2C and to Salmonella typhimurium protein UmuDor stm1998 SWALL:UMUD_SALTY (SWALL:P22493) (139 aa) fasta scores: E(): 1.4e-17%2C 50.38 id in 129 aa gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=YE1733 YE1735 YE1735 YE1735 1934339 1934653 + IS1669 hypothetical protein Similar to several including: Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 7e-31%2C 87.5 38d in 104 aa%2C and in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=YE1735 YE1736 YE1736 YE1736 1934671 1935468 + putative transposase for insertion element IS1669 Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=YE1736 YE1737 YE1737 YE1737 1935786 1936007 + possible homoserine synthase Similar to many including: Emericella nidulans O-acetylhomoserine synthase CysD SWALL:CYSD_EMENI (SWALL:P50125) (437 aa) fasta scores: E(): 5e-12%2C 49.39 id in 83 aa%2C Pseudomonas aeruginosa homocysteine synthase MetY or pa5025 SWALL:Q9HUE4 (EMBL:AE004915) (425 aa) fasta scores: E(): 1.9e-22%2C 82.14 38d in 84 aa and Xanthomonas campestris homocysteine synthase MetB or xcc3068 SWALL:AAM42339 (EMBL:AE012421) (428 aa) fasta scores: E(): 5.7e-18%2C 70.23 38d in 84 aa. This CDS lacks the N-terminal ~~340 aa when compared to its orthologues. This is thought to have resulted from the insertion of the adjacent IS1669 element. pseudogene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=YE1737 YE1738 YE1738 YE1738 1936070 1936927 - conserved hypothetical protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=YE1738 YE1739 YE1739 YE1739 1937261 1937602 + conserved hypothetical protein gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=YE1739 YE1740 YE1740 YE1740 1937666 1937950 - conserved hypothetical protein gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=YE1740 YE1742 YE1742 YE1742 1938628 1939542 - putative inner membrane protein Similar to many proteins of undefined function including: Pseudomonas aeruginosa hypothetical protein Pa3897 SWALL:Q9HXB6 (EMBL:AE004807) (300 aa) fasta scores: E(): 4.2e-52%2C 50.86 38d in 289 aa and Bacillus subtilis hypothetical transport protein YoaV SWALL:YOAV_BACSU (SWALL:O34416) (292 aa) fasta scores: E(): 7.5e-10%2C 23.42 id in 286 aa gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=YE1742 YE1743 YE1743 YE1743 1939494 1940600 + putative AraC-family transcriptional regulatory protein Similar to many proposed regulatory proteins including: Pantoea citrea regulatory protein GdhbR SWALL:Q9Z676 (EMBL:AF102513) (288 aa) fasta scores: E(): 1.5e-71%2C 59.44 38d in 286 aa%2C Pseudomonas aeruginosa probable transcriptional regulator Pa3898 SWALL:Q9HXB5 (EMBL:AE004807) (293 aa) fasta scores: E(): 6.3e-40%2C42.75 38d in 290 aa and Burkholderia pseudomallei probable transcriptional regulator SWALL:Q93SM6 (EMBL:AY032866) (362 aa) fasta scores: E(): 2.6e-32%2C 34.52 38d in 281 aa. Note it is possible that the true translational start site for the CDS lies at codon 73. gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=YE1743 YE1744 YE1744 YE1744 1940624 1941013 - putative exported protein Similar to many including: Salmonella typhimurium putative periplasmic protein Stm1123 SWALL:Q8ZQ37 (EMBL:AE008748) (131 aa) fasta scores: E(): 1.2e-23%2C53.96 38d in 126 aa%2C Salmonella typhi putative secreted protein Sty1158 SWALL:Q8Z7N6 (EMBL:AL627269) (131 aa) fasta scores: E(): 2.2e-23%2C 53.17 38d in 126 aa and Rhizobium meliloti hypothetical protein R02472 or smc02046 SWALL:YO72_RHIME (SWALL:P42879) (139 aa) fasta scores: E(): 1.3e-05%2C 39.82 38d in 113 aa gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=YE1744 YE1745 YE1745 YE1745 1941092 1941403 - putative exported protein Similar to Yersinia pestis putative exported protein Ypo2674 SWALL:Q8ZDB4 (EMBL:AJ414153) (109 aa) fasta scores: E(): 6.8e-23%2C 59.43 38d in 106 aa and to Escherichia coli protein HdeB precursor or b3509 SWALL:HDEB_ECOLI (SWALL:P26605) (108 aa) fasta scores: E(): 2e-13%2C 49.41 38d in 85 aa gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=YE1745 YE1745A YE1745A YE1745A 1941674 1941934 - hypothetical exported protein no known homologs gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=YE1745A YE1746 YE1746 YE1746 1942268 1943590 + hypothetical protein Similar in the C-terminus only to the regions within proteins thought to constitute part of a sensor transduction system%2C including: Synechocystis sp. regulatory components of sensory transduction system sll1673 SWALL:P72790 (EMBL:D90900) (452 aa) fasta scores: E(): 3.5e-22%2C 38.11 38d in 265 aa%2C and to Vibrio cholerae sensory box/ggdef family protein vc2370 SWALL:Q9KPJ7 (EMBL:AE004307) (579 aa) fasta scores: E(): 2.6e-20%2C28.85 38d in 357 aa gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=YE1746 YE1747 YE1747 YE1747 1943804 1944652 - conserved hypothetical protein gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=YE1747 YE1748 YE1748 YE1748 1944755 1946473 - putative ABC transporter (ATP-binding protein) gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=YE1748 YE1749 YE1749 YE1749 1946673 1947092 + putative acetyltransferase Similar to many including: Pantoea agglomerans hypothetical protein SWALL:Q937I1 (EMBL:X99768) (149 aa) fasta scores: E(): 1.1e-20%2C 47.4 38d in 135 aa%2C Salmonella typhimurium putative acetyltransferase Stm1857 SWALL:Q8ZNY6 (EMBL:AE008782) (139 aa) fasta scores: E(): 3.5e-17%2C 42.64 38d in 136 aa and Salmonella typhi putative acetyltransferase Sty1991 SWALL:Q8Z655 (EMBL:AL627272) (139 aa) fasta scores: E(): 9.4e-16%2C 41.17 38d in 136 aa gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=YE1749 YE1750 YE1750 YE1750 1947359 1948861 + probable amino acid permease Similar to many arginine/ornithine antiporters including: Clostridium perfringens ArcD or cpe0170 SWALL:ARCD_CLOPE (SWALL:Q46170) (478 aa) fasta scores: E(): 8.2e-41%2C 45.23 38d in 504 aa and Rhizobium meliloti probable arginine/ornithine antiporter ArcD1 or ra0913 or sma1667 SWALL:Q92YG7 (EMBL:AE007277) (475 aa) fasta scores: E(): 7.8e-59%2C 59.35 38d in 497 aa gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=YE1750 YE1752 YE1752 YE1752 1949296 1949460 + putative membrane protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=YE1752 YE1753 YE1753 YE1753 1949519 1949905 - AraC-family transcriptional regulatory protein gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=YE1753 YE1756 YE1756 YE1756 1950571 1950810 + conserved hypothetical protein gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=YE1756 YE1757 YE1757 YE1757 1950903 1951115 - putative membrane protein gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=YE1757 YE1758 YE1758 YE1758 1951825 1952100 + putative exported protein gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=YE1758 YE1759 YE1759 YE1759 1952302 1952601 + conserved hypothetical protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=YE1759 YE1760 YE1760 YE1760 1952684 1952953 + conserved hypothetical protein gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=YE1760 YE1761 YE1761 aroP aroP 1953145 1954536 + aromatic amino acid transport protein gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=YE1761 YE1762 YE1762 YE1762 1954778 1955392 - putative exported protein Similar to many including: Yersinia pestis putative exported protein Ypo1744 SWALL:Q8ZFG5 (EMBL:AJ414150) (199 aa) fasta scores: E(): 5.2e-65%2C 74.12 38d in 201 aa. Also similar towards the C-terminus to Salmonella typhi antimicrobial peptide resistance and lipid A acylation protein PagP or Sty0677 SWALL:Q8Z8I4 (EMBL:AL627267) (190 aa) fasta scores: E(): 3.9e-35%2C 53.12 38d in 160 aa and Salmonella typhimurium PagP SWALL:Q9ZHL7 (EMBL:AF057021) (186 aa) fasta scores: E(): 5.2e-35%2C 55.33 38d in 150 aa gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=YE1762 YE1764 YE1764 YE1764 1956382 1956498 + conserved hypothetical protein gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=YE1764 YE1765 YE1765 cspC1 cspC1 1956541 1956750 + cold shock-like protein cspC1 Similar to Escherichia coli%2C Escherichia coli O157:H7%2C Salmonella typhimurium%2C and Salmonella typhi cold shock-like protein CspC cspC or msmB or b1823 or z2868 or ecs2533 or stm1837 or sty1967 SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 3.8e-26%2C 98.52 id in 68 aa%2C and to Yersinia pestis cold shock protein ypo1746 SWALL:Q8ZFG3 (EMBL:AJ414150) (69 aa) fasta scores: E(): 6.1e-27%2C 100 38d in 69 aa gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=YE1765 YE1766 YE1766 YE1766 1956828 1957547 - conserved hypothetical protein gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=YE1766 YE1767 YE1767 ftsI2 ftsI2 1957750 1959459 + peptidoglycan synthetase Similar to many peptidoglycan synthetases including: Escherichia coli%2C and Escherichia coli O157:H7 peptidoglycan synthetase precursor FtsI or pbpb or b0084 or z0094 or ecs0088 SWALL:FTSI_ECOLI (SWALL:P04286) (588 aa) fasta scores: E(): 4e-164%2C 71.96 38d in 560 aa and Salmonella typhimurium%2C and Salmonella typhi putative penicillin-binding protein-3 Stm1836 or FtsI2 or Sty1965 SWALL:Q8XF62 (EMBL:AE008781) (581 aa) fasta scores: E(): 1.1e-157%2C 69.14 38d in 564 aa. The product of this CDS is also highly similar to YE0666 69.052 38dentity in 559 aa gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=YE1767 YE1768 YE1768 rrmA rrmA 1959577 1960437 + rRNA (guanine-N1-)-methyltransferase gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=YE1768 YE1769 YE1769 YE1769 1960600 1960878 - conserved hypothetical protein gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=YE1769 YE1770 YE1770 YE1770 1961046 1963121 - conserved hypothetical protein gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=YE1770 YE1771 YE1771 fcuA fcuA 1963919 1965973 + ferrichrome receptor protein gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=YE1771 YE1772 YE1772 yebN yebN 1966103 1966672 - putative membrane protein gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=YE1772 YE1773 YE1773 yobD yobD 1967113 1967574 - putative membrane protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=YE1773 YE1775 YE1775 manZ manZ 1967791 1968654 - PTS system%2C mannose-specific IID component gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=YE1775 YE1776 YE1776 manY manY 1968688 1969485 - PTS system%2C mannose-specific IIC component gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=YE1776 YE1777 YE1777 manX manX 1969703 1970668 - PTS system%2C mannose-specific IIAB component gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=YE1777 YE1778 YE1778 yoaE yoaE 1971438 1972982 + putative membrane protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=YE1778 YE1779 YE1779 sdaA sdaA 1973872 1975236 - L-serine dehydratase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=YE1779 YE1780 YE1780 YE1780 1975689 1976276 - mutT-family protein Similar to Yersinia pestis MutT-family protein Ypo1772 SWALL:Q8ZFE2 (EMBL:AJ414150) (199 aa) fasta scores: E(): 7.4e-58%2C 78.35 38d in 194 aa%2C and to Escherichia coli hypothetical protein YeaB yeab or b1813 SWALL:YEAB_ECOLI (SWALL:P43337) (192 aa) fasta scores: E(): 4e-42%2C 60.32 38d in 184 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi hypothetical protein YeaB or stm1825 or sty1955 SWALL:YEAB_SALTY (SWALL:P43339) (192 aa) fasta scores: E(): 1.3e-41%2C 58.69 38d in 184 aa gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=YE1780 YE1781 YE1781 pabB pabB 1976289 1977659 - para-aminobenzoate synthase component I gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=YE1781 YE1782 YE1782 YE1782 1977842 1978099 + conserved hypothetical protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=YE1782 YE1784 YE1784 purT purT 1978355 1979536 - phosphoribosylglycinamide formyltransferase gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=YE1784 YE1785 YE1785 dbpA dbpA 1979790 1981172 + ATP-dependent RNA helicase gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=YE1785 YE1786 YE1786 YE1786 1981268 1981588 + conserved hypothetical protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=YE1786 YE1787 YE1787 YE1787 1981628 1981936 + conserved hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=YE1787 YE1788 YE1788 YE1788 1982039 1982398 + putative exported protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=YE1788 YE1789 YE1789 ptrB ptrB 1982588 1984642 + oligopeptidase B gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=YE1789 YE1790 YE1790 exoX exoX 1984654 1985316 - putative exodeoxyribonuclease Highly similar to Escherichia coli exodeoxyribonuclease X ExoX or b1844 SWALL:EXOX_ECOLI (SWALL:P76281) (220 aa) fasta scores: E(): 3.4e-51%2C 60.64 id in 216 aa%2C and to Escherichia coli O157:H7 hypothetical protein z2894 or ecs2554 SWALL:Q8XCK6 (EMBL:AE005407) (220 aa) fasta scores: E(): 3.4e-51%2C 60.64 38d in 216 aa gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=YE1790 YE1791 YE1791 YE1791 1985629 1986633 - transposase for insertion sequence element IS1328 Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.7e-131%2C 98.8 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8e-98%2C 73.78 id in 328 aa gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=YE1791 YE1793 YE1793 pip pip 1987170 1988126 + proline iminopeptidase gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=YE1793 YE1794 YE1794 holE holE 1988176 1988409 - DNA polymerase III%2C theta subunit gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=YE1794 YE1795 YE1795 ftnA ftnA 1988793 1989302 + ferritin gene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=YE1795 YE1796 YE1796 YE1796 1989693 1990079 + putative copper resistance protein gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=YE1796 YE1797 YE1797 YE1797 1990081 1990965 + putative copper resistance protein D gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=YE1797 YE1798 YE1798 yebY yebY 1991047 1991403 + putative exported protein gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=YE1798 YE1799 YE1799 int int 1991800 1992855 - phage integrase Similar to many bacteriophage integrases including: Bacteriophage HK022 Int SWALL:VINT_BPHK0 (SWALL:P16407) (357 aa) fasta scores: E(): 3.5e-29%2C 38.08 38d in 323 aa%2CSalmonella typhi putative integrase Sty2077 SWALL:Q8Z5Y3 (EMBL:AL627272) (358 aa) fasta scores: E(): 6.9e-50%2C46.22 38d in 318 aa and to Bacteriophage lambda Integrase Int SWALL:VINT_LAMBD (SWALL:P03700) (356 aa) fasta scores: E(): 4.5e-28%2C 37.15 38d in 323 aa gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=YE1799 YE1800 YE1800 xis xis 1992830 1993099 - excisionase Similar to many bacteriophage excisionases including: lambda excisionase Xis SWALL:VXIS_LAMBD (SWALL:P03699) (72 aa) fasta scores: E(): 0.047%2C 30.95 38d in 84 aa and Salmonella typhi putative excisionase Sty2076 SWALL:Q8Z5Y4 (EMBL:AL627272) (93 aa) fasta scores: E(): 2.4e-09%2C 45.78 38d in 83 aa gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=YE1800 YE1801 YE1801 YE1801 1993206 1993514 - hypothetical phage-related protein no significant database hits gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=YE1801 YE1802 YE1802 YE1802 1993532 1993870 - hypothetical phage protein no significant database hits gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=YE1802 YE1803 YE1803 tnpB tnpB 1993951 1994700 - transposase B Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.2e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac3248 SWALL:AAM38092 (EMBL:AE011970) (272 aa) fasta scores: E(): 3.2e-37%2C 44.13 38d in 247 aa gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=YE1803 YE1803A YE1803A tnpA tnpA 1994790 1994930 - IS1329 transposase A (pseudogene) Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.4e-14%2C 100 38d in 46 aa. The Insertion element has been disrupted by the subsequent insertion of a phage-like element. This wouold result in the deletion of 64 residues from the N-terminus of the predicted product of this CDS. pseudogene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=YE1803A YE1804 YE1804 YE1804 1994930 1995937 + terminase%2C ATPase subunit (remnant) Similar many P2-like terminases including: Bacteriophage P2 terminase%2C ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 4.2e-96%2C 68.86 38d in 334 aa%2C Bacteriophage 186 terminase subunit SWALL:Q9T0R3 (EMBL:U32222) (589 aa) fasta scores: E(): 6.1e-99%2C 70.35 38d in 334 aa and Salmonella typhi terminase%2C ATPase subunit Sty3675 SWALL:Q8Z358 (EMBL:AL627279) (588 aa) fasta scores: E(): 3.8e-98%2C69.36 38d in 333 aa.%3B This CDS is likely to have been disrupted by the insertion of an IS1329 element pseudogene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=YE1804 YE1805 YE1805 YE1805 1995934 1996935 + phage portal vertex protein Similar to many bacteriophage portal proteins including: Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 1.2e-88%2C 65.95 38d in 329 aa%2C Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 5.4e-93%2C 67.79 38d in 326 aa and Salmonella typhimurium fels-2 prophage: similar to gpQ%2Cportal vector protein or stm2723 SWALL:Q8ZMS9 (EMBL:AE008824) (346 aa) fasta scores: E(): 1.5e-91%2C70.35 38d in 307 aa gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=YE1805 YE1806 YE1806 YE1806 1996992 1997513 - hypothetical phage protein no significant database hits gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=YE1806 YE1807 YE1807 YE1807 1997545 1998006 - hypothetical phage protein Previously sequenced as Yersinia enterocolitica hypothetical protein SWALL:Q8VLR9 (EMBL:AJ414030) (153 aa) fasta scores: E(): 1.4e-58%2C 100 38d in 153 aa gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=YE1807 YE1808 YE1808 yenI yenI 1998216 2000696 - methyltransferase-endonuclease Previously sequenced as: Yersinia enterocolitica methyltransferase-endonuclease YenI SWALL:Q8VLS0 (EMBL:AJ414030) (826 aa) fasta scores: E(): 0%2C 100 38d in 826 aa. Also highly similar to Bacillus subtilis type II restriction enzyme BsuBI or hsrB SWALL:T2BB_BACSU (SWALL:P33562) (316 aa) fasta scores: E(): 2e-72%2C 55.41 id in 305 aa gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=YE1808 YE1809 YE1809 YE1809 2000971 2001138 - hypothetical phage protein Weakly similar in parts to Ralstonia solanacearum hypothetical protein Rsc1697 or rs04093 SWALL:Q8XYR1 (EMBL:AL646065) (112 aa) fasta scores: E(): 3.3e-05%2C45.09 38d in 51 aa gene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=YE1809 YE1810 YE1810 YE1810 2001434 2001697 + Insertion element protein Previously sequenced as Yersinia enterocolitica%2Cand Pantoea agglomerans transposase SWALL:Q46611 (EMBL:AJ414030) (87 aa) fasta scores: E(): 1.8e-30%2C 100 id in 87 aa. Highly similar to many other insertion element proteins including: Pantoea agglomerans pv. gypsophilae orfA SWALL:Q9AMM2 (EMBL:AF324174) (87 aa) fasta scores: E(): 5.5e-29%2C 95.4 38d in 87 aa and Burkholderia cepacia insertion element IS407 hypothetical 10.0 kDa protein SWALL:YI74_BURCE (SWALL:P24580) (87 aa) fasta scores: E(): 1.9e-20%2C 70.93 38d in 86 aa gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=YE1810 YE1811 YE1811 YE1811 2001724 2002473 + transposase for insertion element IS1222 Previously sequenced as Yersinia enterocolitica IS1222-like transposase SWALL:Q9X9I1 (EMBL:AJ132945) (165 aa) fasta scores: E(): 1e-68%2C 100 38d in 165 aa. Also similar to many transposases including: Ralstonia solanacearum ISrso14-transposase B protein SWALL:Q8XF72 (EMBL:AL646083) (275 aa) fasta scores: E(): 3.8e-49%2C59.21 38d in 255 aa and to Burkholderia cepacia insertion element IS407 hypothetical 20.5 kDa protein SWALL:YI71_BURCE (SWALL:P24577) (183 aa) fasta scores: E(): 2.2e-47%2C 69.04 38d in 168 aa gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=YE1811 YE1813 YE1813 YE1813 2003309 2003704 + putative exported phage-related protein Similar to several bacteriophage proteins including: Ralstonia solanacearum probable phage-related transmembrane protein Rsc1933 or rs03502 SWALL:Q8XY30 (EMBL:AL646067) (134 aa) fasta scores: E(): 0.076%2C 33.07 id in 127 aa%2C Bacteriophage P27 hypothetical protein SWALL:Q9MBZ5 (EMBL:AJ249351) (130 aa) fasta scores: E(): 4.7%2C 31.57 38d in 114 aa and to Bacteriophage P27 putative holin SWALL:Q8W636 (EMBL:AJ298298) (144 aa) fasta scores: E(): 5.1%2C 31.57 38d in 114 aa gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=YE1813 YE1814 YE1814 YE1814 2003704 2004000 + hypothetical 10.5 kDa protein Similar to Bacteriophage P27 hypothetical protein SWALL:Q9MBZ4 (EMBL:AJ249351) (91 aa) fasta scores: E(): 0.019%2C 29.87 38d in 77 aa and to Salmonella typhi putative prophage membrane protein Sty1041 SWALL:Q8Z7W3 (EMBL:AL627268) (93 aa) fasta scores: E(): 3.9e-05%2C 33.76 id in 77 aa gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=YE1814 YE1815 YE1815 YE1815 2003987 2004529 + conserved hypothetical phage protein Similar to many including: bacteriophage phi-8 bacteriophage phi-8 segment S SWALL:Q9MC03 (EMBL:AF226853) (169 aa) fasta scores: E(): 1.1%2C 29.41 38d in 136 aa%2CSalmonella typhi hypothetical protein Sty1889 SWALL:Q8Z6A5 (EMBL:AL627271) (180 aa) fasta scores: E(): 4.1e-51%2C69.66 38d in 178 aa and Salmonella typhimurium hypothetical protein Stm0016 SWALL:Q8ZS11 (EMBL:AE008693) (177 aa) fasta scores: E(): 1.7e-40%2C 60.34 38d in 174 aa gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=YE1815 YE1816 YE1816 YE1816 2004575 2005024 + putative phage endopeptidase Similar to many bacteriophage endopeptidases including: Bacteriophage lambda endopeptidase rZ SWALL:ENPP_LAMBD (SWALL:P00726) (153 aa) fasta scores: E(): 9.5e-17%2C 43.13 38d in 153 aa%2C Bacteriophage 933W endopeptidase RZ SWALL:Q9XJJ6 (EMBL:AF125520) (154 aa) fasta scores: E(): 1e-19%2C 49.02 38d in 153 aa and Bacteriophage VT2-Sa SWALL:Q9T1L2 (EMBL:AP000363) (155 aa) fasta scores: E(): 2.1e-19%2C 48.7 38d in 154 aa gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=YE1816 YE1818 YE1818 YE1818 2005427 2006431 + transposase for insertion sequence element IS1328 Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.1e-129%2C 97.3 38d in 334 aa. Also similar to Shigella flexneri 2A IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 8.9e-98%2C74.08 38d in 328 aa gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=YE1818 YE1819 YE1819 YE1819 2006793 2007209 + hypothetical phage-related protein Weakly similar in parts to Bacteriophage SfV hypothetical protein orf44 SWALL:AAL89446 (EMBL:U82619) (269 aa) fasta scores: E(): 5.9e-09%2C 39.39 38d in 99 aa and Bacteriophage HK620 hypothetical protein HkbK SWALL:Q9AZ05 (EMBL:AF335538) (165 aa) fasta scores: E(): 0.00044%2C 32.69 38d in 104 aa gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=YE1819 YE1820 YE1820 ail ail 2007722 2008258 + attachment invasion locus protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=YE1820 YE1821 YE1821 YE1821 2008303 2008593 - transposase (pseudogene) Similar to the very C-terminus of Yersinia enterocolitica insertion element Orf 2 SWALL:Q56883 (EMBL:M29945) (125 aa) fasta scores: E(): 1.5e-36%2C 98.95 id in 96 aa and to Ralstonia solanacearum ISrso11-transposase orfB protein ISrso11b or rsc2265 or rs01294 SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 4.3e-20%2C 60.22 38d in 88 aa. Note the N-terminus of this CDS has been deleted possibly by the subsequent insertion of the adjacent IS1499 element pseudogene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=YE1821 YE1822 YE1822 trp1400A trp1400A 2008650 2008937 + IS1400 transposase A Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 5e-31%2C 95.78 38d in 95 aa. Also similar to many others e.g. Yersinia pestis IS1400 transposase a Trp1400a or Ypo2640 SWALL:Q8ZDD3 (EMBL:AJ414153) (87 aa) fasta scores: E(): 7.9e-22%2C 76.13 id in 88 aa gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=YE1822 YE1823 YE1823 trp1400B trp1400B 2008987 2009664 + IS1400 transposase B (pseudogene) Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 3.2e-92%2C 99.55 38d in 226 aa. Also similar to Yersinia pestis putative transposase Ypcd1.94 SWALL:Q9RI05 (EMBL:AL117189) (269 aa) fasta scores: E(): 4.4e-32%2C 42.79 38d in 229 aa. Note the differing predicted start codons for this CDS compared with that previously published. ThIs IS1400 element is a partial sequence. Consequently the predicted product of this CDS lacks the C-terminal 67 residues. pseudogene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=YE1823 YE1824 YE1824 YE1824 2009678 2010661 + conserved hypothetical protein (pseudogene) Similar to the C-terminal proteions of Yersinia pestis pMT1 plasmid hypothetical protein Y1030 or Ypmt1.24C SWALL:O68741 (EMBL:AF074611) (418 aa) fasta scores: E(): 7.1e-14%2C 26.3 38d in 327 aa and Salmonella typhi plasmid pHCM2 hypothetical protein Hcm2.0070C SWALL:Q934Z6 (EMBL:AL513384) (418 aa) fasta scores: E(): 7.1e-14%2C 26.3 38d in 327 aa. It appears that the 5' portion of this CDS has been deleted%2C possibly by the insertion of the adjacent IS1400 element. pseudogene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=YE1824 YE1825 YE1825 YE1825 2010666 2011838 + putative DNA-binding protein no significant database hits gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=YE1825 YE1826 YE1826 tnpB tnpB 2011853 2012602 - transposase B Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 2.3e-104%2C 99.59 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac3248 SWALL:AAM38092 (EMBL:AE011970) (272 aa) fasta scores: E(): 8e-37%2C 43.72 38d in 247 aa gene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=YE1826 YE1827 YE1827 tnpA tnpA 2012692 2013024 - IS1329 transposase A Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=YE1827 YE1829 YE1829 pgsA pgsA 2013890 2014438 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=YE1829 YE1830 YE1830 uvrC uvrC 2014497 2016329 - excinuclease ABC subunit C gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=YE1830 YE1831 YE1831 uvrY uvrY 2016322 2016978 - response regulator protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=YE1831 YE1832 YE1832 YE1832 2017670 2017894 + conserved hypothetical protein gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=YE1832 YE1833 YE1833 ydgC ydgC 2018006 2018344 + putative membrane protein gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=YE1833 YE1834 YE1834 YE1834 2018375 2018629 - putative membrane protein gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=YE1834 YE1835 YE1835 YE1835 2019471 2019890 - putative DNA-binding protein Similar to Escherichia coli O157:H7 similar to the regulatory protein DicA encoded by prophage CP-933O z2045 or ecs1765 SWALL:Q8XCA0 (EMBL:AE005343) (135 aa) fasta scores: E(): 5.6e-07%2C 31.96 38d in 122 aa and to Salmonella typhi putative DNA-binding protein Sty1020 SWALL:Q8Z7Y0 (EMBL:AL627268) (134 aa) fasta scores: E(): 7.5e-07%2C 28.8 38d in 125 aa gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=YE1835 YE1836 YE1836 YE1836 2020221 2020403 + hypothetical phage-related protein Similar to Bacteriophage P27 hypothetical 7.7 kDa protein SWALL:Q8W652 (EMBL:AJ298298) (67 aa) fasta scores: E(): 0.002%2C 45.23 38d in 42 aa gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=YE1836 YE1837 YE1837 YE1837 2020829 2021248 + probable phage antitermination protein Similar to many bacteriophage antitermination proteins including: Bacteriophage APSE-1 probable antitermination protein Q 5 SWALL:REGQ_BPAPS (SWALL:Q9T1U3) (148 aa) fasta scores: E(): 6.4e-26%2C 56.8 id in 125 aa and to Yersinia pestis probable phage antitermination protein Q Ypo1234 SWALL:Q8ZGQ3 (EMBL:AJ414147) (159 aa) fasta scores: E(): 1.4e-36%2C68.46 38d in 130 aa gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=YE1837 YE1838 YE1838 YE1838 2021426 2021602 - putative membrane protein Similar to several proteins of undefined function including: Escherichia coli hypothetical protein YdcX or b1445 SWALL:YDCX_ECOLI (SWALL:P76109) (82 aa) fasta scores: E(): 0.00022%2C 44.23 38d in 52 aa and Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YjdO or b4128.1 or z5731 or ecs5110.1 SWALL:YJDO_ECOLI (SWALL:P58038) (57 aa) fasta scores: E(): 1.7e-06%2C 51.92 id in 52 aa gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=YE1838 YE1839 YE1839 YE1839 2021829 2022005 + conserved hypothetical phage protein Similar to Bacteriophage PS34 gp13 SWALL:O80287 (EMBL:AJ011580) (67 aa) fasta scores: E(): 3.5e-11%2C 56.36 id in 55 aa and to Bacteriophage PS119 gp13 13 SWALL:O80291 (EMBL:AJ011581) (67 aa) fasta scores: E(): 3.5e-11%2C 56.36 38d in 55 aa gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=YE1839 YE1840 YE1840 YE1840 2022007 2022489 + bacteriophage lysozyme Similar to many bacteriophage lysozymes including: Bacteriophage Mu lysozyme lys or 22 SWALL:LYCV_BPMU (SWALL:Q9T1X2) (171 aa) fasta scores: E(): 1e-23%2C 49.66 id in 149 aa%2C Bacteriophage PS119 lysozyme 19 SWALL:LYCV_BPPS1 (SWALL:O80292) (167 aa) fasta scores: E(): 3.1e-35%2C 57.14 38d in 161 aa and Bacteriophage PS34 lysozyme 19 SWALL:LYCV_BPPS3 (SWALL:O80288) (167 aa) fasta scores: E(): 5e-34%2C 55.9 38d in 161 aa gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=YE1840 YE1842 YE1842 YE1842 2022862 2023746 + lipase Similar to many including: Pseudomonas fragi lipase precursor SWALL:LIP_PSEFR (SWALL:P08658) (277 aa) fasta scores: E(): 5.4e-54%2C 54.27 38d in 269 aa and Proteus vulgaris alkaline lipase SWALL:Q52614 (EMBL:U33845) (290 aa) fasta scores: E(): 3.9e-59%2C 58.7 38d in 293 aa gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=YE1842 YE1843 YE1843 YE1843 2024540 2025412 + conserved hypothetical protein Similar to Bacillus subtilis ribosomal large subunit pseudouridine synthase B rluB SWALL:RLUB_BACSU (SWALL:P35159) (229 aa) fasta scores: E(): 7.7e-20%2C 37.44 id in 227 aa. Also similar over the entire range to Salmonella typhi putative pseudouridine synthase Sty4410 SWALL:Q8Z1V3 (EMBL:AL627282) (289 aa) fasta scores: E(): 1.5e-86%2C 79.31 38d in 290 aa gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=YE1843 YE1844 YE1844 YE1844 2025511 2025774 - sodium/glutamate symport carrier protein (pseudogene) This CDS is a pseudogene from which the central region has been deleted. The coding sequence also contains a stop codon. The N- and C-termini of the predicted product of this CDS are similar to the very N- and C-termini of many sodium/glutamate symporters including: Escherichia coli sodium/glutamate symport carrier protein GltS or GltC or b3653 SWALL:GLTS_ECOLI (SWALL:P19933) blast scores: E(): 6e-34%2C score: 361 83 38d and to Yersinia pestis sodium/glutamate symport carrier protein GltS or Ypo0035 SWALL:Q8ZJQ7 (EMBL:AJ414141) blast scores: E(): 6e-36%2C score: 378 74 38d pseudogene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=YE1844 YE1845 YE1845 YE1845 2026785 2027630 - putative inner membrane protein Similar to many proteins of undefined function including: Rhizobium loti hypothetical protein Mll3062 SWALL:Q98H24 (EMBL:AP003001) (281 aa) fasta scores: E(): 6.7e-39%2C 43.06 38d in 281 aa and Brucella melitensis transporter%2C Dme family Bmei1244 SWALL:Q8YGB5 (EMBL:AE009563) (281 aa) fasta scores: E(): 3.5e-34%2C 39 id in 282 aa gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=YE1845 YE1846 YE1846 YE1846 2027865 2028122 + conserved hypothetical protein gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=YE1846 YE1847 YE1847 YE1847 2028284 2029324 + putative inner membrane protein Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YnaI or b1330 or z2437 or ecs1912 SWALL:YNAI_ECOLI (SWALL:P77253) (343 aa) fasta scores: E(): 1.7e-83%2C 60.4 38d in 346 aa and Aquifex aeolicus hypothetical protein Aq_812 SWALL:Y812_AQUAE (SWALL:O66994) (368 aa) fasta scores: E(): 1e-20%2C 26.92 id in 338 aa gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=YE1847 YE1848 YE1848 YE1848 2029506 2030141 + putative transferase Similar to many proposed glutathione-S transferases including: Escherichia coli hypothetical GST-like protein YfcF or b2301 SWALL:YFCF_ECOLI (SWALL:P77544) (214 aa) fasta scores: E(): 2.4e-45%2C 60.28 38d in 214 aa and Salmonella typhi putative glutathione-S transferase Sty2578 SWALL:Q8Z514 (EMBL:AL627274) (214 aa) fasta scores: E(): 7.2e-47%2C 60.66 38d in 211 aa. Also weakly similar to Eukaryotic transferases including: Mus musculus glutathione S-transferase theta 1 GstT1 SWALL:GTT1_MOUSE (SWALL:Q64471) (239 aa) fasta scores: E(): 1.6e-06%2C 30 38d in 130 aa gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=YE1848 YE1849 YE1849 YE1849 2030211 2030759 + putative acetyl transferase Similar to Proteus mirabilis putative acetyl transferase SWALL:O86434 (EMBL:AJ000084) (185 aa) fasta scores: E(): 1.9e-34%2C 53.14 38d in 175 aa and Streptomyces coelicolor putative acetyltranferase Sco7447 or Sc5c11.04C SWALL:Q9L168 (EMBL:AL158060) (183 aa) fasta scores: E(): 6.3e-27%2C 47.45 38d in 177 aa gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=YE1849 YE1850 YE1850 YE1850 2031267 2031500 + conserved hypothetical protein gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=YE1850 YE1853 YE1853 YE1853 2032223 2032612 + conserved hypothetical protein gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=YE1853 YE1854 YE1854 YE1854 2032730 2032972 - conserved hypothetical protein Similar to several proteins of undefined function including: Yersinia pestis hypothetical protein Ypo1694 SWALL:Q8ZFK9 (EMBL:AJ414150) (79 aa) fasta scores: E(): 1.9e-24%2C 76.25 38d in 80 aa%2C Salmonella typhi hypothetical protein Sty1982 SWALL:Q8Z661 (EMBL:AL627272) (79 aa) fasta scores: E(): 6.8e-16%2C 55.69 38d in 79 aa and Escherichia coli hypothetical protein YebV or b1836 SWALL:YEBV_ECOLI (SWALL:P76274) (78 aa) fasta scores: E(): 7.9e-15%2C 53.94 38d in 76 aa gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=YE1854 YE1855 YE1855 YE1855 2033085 2034794 - conserved hypothetical protein Similar over the entire length to Rhizobium sp. hypothetical protein Y4lL SWALL:Y4LL_RHISN (SWALL:P55552) (827 aa) fasta scores: E(): 6e-22%2C 26.66 38d in 540 aa. Similar in the C-terminus to several proposed two-component regulatory proteins e.g. Synechocystis sp. regulatory components of sensory transduction system Sll1673 SWALL:P72790 (EMBL:D90900) (452 aa) fasta scores: E(): 1.1e-25%2C 46.31 38d in 190 aa%2C and to Synechocystis sp. pled pled or slr0829 SWALL:Q55414 (EMBL:D64003) (829 aa) fasta scores: E(): 3.2e-23%2C 31.92 38d in 451 aa and Pseudomonas aeruginosa probable two-component response regulator Pa3702 SWALL:Q9HXT9 (EMBL:AE004789) (347 aa) fasta scores: E(): 3.2e-23%2C 44.08 38d in 186 aa gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=YE1855 YE1856 YE1856 YE1856 2035017 2036027 - putative membrane protein gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=YE1856 YE1857 YE1857 YE1857 2036058 2038499 - probable outer membrane usher protein gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=YE1857 YE1858 YE1858 YE1858 2038586 2039335 - putative chaperone protein gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=YE1858 YE1859 YE1859 YE1859 2039382 2039939 - putative exported protein Also similar to YE1861 27.473 38dentity in 182 aa overlap and YE1860 34.463 38dentity in 177 aa overlap gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=YE1859 YE1860 YE1860 YE1860 2039950 2040507 - putative exported protein Also similar to YE1861 35.795 38dentity in 176 aa overlap and YE1859 34.831 38dentity in 178 aa overlap gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=YE1860 YE1861 YE1861 YE1861 2040513 2041067 - putative exported protein Also similar to YE1860 35.795 38dentity in 176 aa overlap and YE1859 26.519 38dentity in 181 aa overlap gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=YE1861 YE1862 YE1862 YE1862 2041377 2042801 - putative membrane transport protein Similar to many membrane transport proteins including: Rhizobium loti probable transmembrane efflux protein Mr1142 SWALL:Q98L80 (EMBL:AP002996) (490 aa) fasta scores: E(): 4.8e-81%2C 53.47 38d in 475 aa and Streptomyces glaucescens tetracenomycin C resistance and export protein TcmA SWALL:TCMA_STRGA (SWALL:P39886) (538 aa) fasta scores: E(): 6.8e-26%2C 29.29 38d in 413 aa gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=YE1862 YE1863 YE1863 YE1863 2042930 2043850 + putative LysR-family transcriptional regulatory protein Similar to many LysR-family transcriptional regulatory proteins including: Pseudomonas putida transcriptional activator protein NahR SWALL:NAHR_PSEPU (SWALL:P10183) (300 aa) fasta scores: E(): 2.5e-19%2C 31.1 id in 299 aa%2C Rhizobium meliloti putative transcription regulator protein R00218 or Smc02893 SWALL:Q92SY0 (EMBL:AL591782) (308 aa) fasta scores: E(): 2.3e-69%2C67.23 38d in 296 aa%2C and to Rhizobium meliloti nodulation protein D I NodD1 or ra0476 or sma0870 SWALL:NOD1_RHIME (SWALL:P03031) (308 aa) fasta scores: E(): 5e-17%2C 33.22 id in 295 aa gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=YE1863 YE1864 YE1864 YE1864 2043863 2046493 - conserved hypothetical protein gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=YE1864 YE1865 YE1865 yebS yebS 2046462 2047709 - putative membrane protein gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=YE1865 YE1866 YE1866 YE1866 2047950 2048447 + conserved hypothetical protein gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=YE1866 YE1867 YE1867 proQ proQ 2048543 2049271 + ProP effector homologue gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=YE1867 YE1868 YE1868 prc prc 2049291 2051366 + tail-specific protease precursor gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=YE1868 YE1869 YE1869 htpX htpX 2051661 2052542 + putative heat shock protein gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=YE1869 YE1870 YE1870 YE1870 2052949 2053968 - putative transposase for IS1667 Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.3e-56%2C 46.68 38d in 332 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3e-50%2C 42.47 38d in 332 aa gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=YE1870 YE1871 YE1871 YE1871 2054157 2054585 - putative lipoprotein Similar to Escherichia coli O157:H7 Z0638 lipoprotein or ecs0546 SWALL:Q8XD08 (EMBL:AE005230) (140 aa) fasta scores: E(): 1.1e-18%2C 48.93 38d in 141 aa gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=YE1871 YE1872 YE1872 YE1872 2054582 2054731 - putative exported protein no significant database hits gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=YE1872 YE1873 YE1873 YE1873 2054736 2055374 - putative exported protein Similar in the C-terminus to many YadA-like exproted proteins including: to Yersinia enterocolitica invasin precursor YadA or YopA or inva or yop1 SWALL:YADA_YEREN (SWALL:P31489) (455 aa) fasta scores: E(): 0.028%2C 24.42 38d in 131 aa%2C Yersinia pestis putative exported protein Ypo1387 SWALL:Q8ZGB6 (EMBL:AJ414148) (364 aa) fasta scores: E(): 6.7e-05%2C 26.15 38d in 195 aa and Yersinia pseudotuberculosis invasin precursor YadA or YopA or inva or yop1 SWALL:YADA_YERPS (SWALL:P10858) (434 aa) fasta scores: E(): 0.011%2C 26.51 38d in 132 aa gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=YE1873 YE1874 YE1874 YE1874 2055684 2056085 + putative DNA-binding protein no significant database hits gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=YE1874 YE1875 YE1875 YE1875 2056110 2057477 - putative transport protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=YE1875 YE1876 YE1876 ogl ogl 2057802 2058968 + oligogalacturonate lyase gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=YE1876 YE1877 YE1877 kdgR kdgR 2059155 2059946 + IclR-family transcriptional regulatory protein gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=YE1877 YE1878 YE1878 b0867 b0867 2060222 2061073 + probable N-acetylmuramoyl-L-alanine amidase gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=YE1878 YE1879 YE1879 gltP gltP 2061299 2062696 - putative transport protein gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=YE1879 YE1880 YE1880 YE1880 2062909 2063457 - putative membrane protein gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=YE1880 YE1881 YE1881 YE1881 2063815 2064513 - putative exported protein gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=YE1881 YE1882 YE1882 YE1882 2064819 2066111 - putative sugar-binding protein gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=YE1882 YE1883 YE1883 YE1883 2066127 2067254 - putative sugar ABC transporter gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=YE1883 YE1884 YE1884 YE1884 2067268 2068107 - putative sugar ABC transporter (permease) gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=YE1884 YE1885 YE1885 YE1885 2068178 2069068 - putative ABC sugar transporter (permease) gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=YE1885 YE1886 YE1886 kdgC kdgC 2069109 2070776 - exopolygalacturonate lyase gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=YE1886 YE1887 YE1887 kduD1 kduD1 2071104 2071865 - 2-deoxy-D-gluconate 3-dehydrogenase gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=YE1887 YE1888 YE1888 kduI kduI 2071977 2072813 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase Highly similar to Erwinia chrysanthemi 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI SWALL:KDUI_ERWCH (SWALL:Q05529) (278 aa) fasta scores: E(): 9.8e-96%2C 80.93 38d in 278 aa and Yersinia pestis 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI or Ypo1725 SWALL:Q8ZFH8 (EMBL:AJ414150) (278 aa) fasta scores: E(): 7.5e-104%2C 90.28 38d in 278 aa gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=YE1888 YE1889 YE1889 kdgF kdgF 2073051 2073383 + pectin degradation protein gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=YE1889 YE1890 YE1890 YE1890 2073494 2074159 - conserved hypothetical protein gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=YE1890 YE1891 YE1891 yfeE yfeE 2074409 2074963 + putative yfeABCD locus regulator gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=YE1891 YE1892 YE1892 YE1892 2075357 2076247 + putative LysR-family transcriptional regulatory protein gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=YE1892 YE1893 YE1893 YE1893 2076244 2077725 - putative 4-hydroxybutyrate coenzyme A transferase gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=YE1893 YE1894 YE1894 YE1894 2077751 2078536 - possible dehydratase Similar to Clostridium acetobutylicum 3-hydroxybutyryl-CoA dehydratase%2C involved in fatty acid metabolism%2C Crt or cac2712 SWALL:CRT_CLOAB (SWALL:P52046) (261 aa) fasta scores: E(): 2.7e-18%2C 31.72 38d in 249 aa. Also similar to several other putative hydratases e.g. Bacillus halodurans enoyl CoA hydratase YngF or PhaA or bh0201 SWALL:Q9Z9V2 (EMBL:AB011837) (257 aa) fasta scores: E(): 3.3e-21%2C 31.55 38d in 263 aa. Also highly similar to Escherichia coli hypothetical protein YgfG or b2919 SWALL:YGFG_ECOLI (SWALL:P52045) (261 aa) fasta scores: E(): 3.9e-87%2C 85.38 38d in 260 aa. gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=YE1894 YE1894A YE1894A YE1894A 2078550 2079545 - putative GTPase/ATPase Highly similar to Escherichia coli lao/ao transport system kinase Argk or b2918 SWALL:ARGK_ECOLI (SWALL:P27254) (331 aa) fasta scores: E(): 1.5e-78%2C 67.37 id in 331 aa%2C Caulobacter crescentus hypothetical protein Cc2483 SWALL:YO83_CAUCR (SWALL:P37895) (326 aa) fasta scores: E(): 3.1e-48%2C 49.05 38d in 316 aa and Methylobacterium extorquens GTPase/ATPase MeaB SWALL:Q8RPA0 (EMBL:AF416776) (329 aa) fasta scores: E(): 9e-47%2C 45.17 38d in 321 aa gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=YE1894A YE1895 YE1895 YE1895 2079538 2081682 - methylmalonyl-CoA mutase Highly similar to many methylmalonyl-CoA mutases including: Rhizobium meliloti methylmalonyl-CoA mutase BhbA or rb1449 or smb20757 SWALL:MUTB_RHIME (SWALL:O86028) (712 aa) fasta scores: E(): 3.2e-160%2C 60.7 38d in 710 aa and to Escherichia coli Sbm protein or b2917 SWALL:SBM_ECOLI (SWALL:P27253) (714 aa) fasta scores: E(): 0%2C 86.27 38d in 714 aa gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=YE1895 YE1896 YE1896 YE1896 2081969 2082838 - conserved hypothetical protein gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=YE1896 YE1897 YE1897 YE1897 2083254 2084141 - chelated iron transport system membrane protein gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=YE1897 YE1898 YE1898 YE1898 2084138 2085022 - chelated iron transport system membrane protein gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=YE1898 YE1899 YE1899 YE1899 2085022 2085912 - ATP-binding transport protein gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=YE1899 YE1900 YE1900 YE1900 2085909 2086877 - periplasmic-binding protein gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=YE1900 YE1901 YE1901 YE1901 2087089 2087751 + putative membrane-bound lytic murein transglycosylase gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=YE1901 YE1902 YE1902 marC marC 2087962 2088645 - multiple antibiotic resistance protein gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=YE1902 YE1904 YE1904 YE1904 2089053 2089337 + conserved hypothetical protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=YE1904 YE1905 YE1905 YE1905 2089426 2089764 + hypothetical protein weakly similar to: Agrobacterium tumefaciens hypothetical protein Atu0742 or agr_c_1343 SWALL:Q8UHE0 (EMBL:AE009042) (123 aa) fasta scores: E(): 6.4e-08%2C36.44 38d in 107 aa%2C Caulobacter crescentus hypothetical protein Cc1951 SWALL:Q9A6X5 (EMBL:AE005868) (110 aa) fasta scores: E(): 0.029%2C 27.77 38d in 90 aa and Halobacterium sp. Vng0367H SWALL:Q9HS78 (EMBL:AE004995) (114 aa) fasta scores: E(): 0.049%2C 34.65 38d in 101 aa gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=YE1905 YE1906 YE1906 YE1906 2089809 2090045 + conserved hypothetical protein weakly similar to Pasteurella multocida hypothetical protein Pm1196 SWALL:Q9CLM6 (EMBL:AE006160) (84 aa) fasta scores: E(): 8e-10%2C 44 38d in 75 aa gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=YE1906 YE1909 YE1909 YE1909 2090816 2091529 + putative inner membrane protein Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YqgA or b2966 SWALL:YQGA_ECOLI (SWALL:Q46831) (235 aa) fasta scores: E(): 2.1e-37%2C 46.12 38d in 232 aa and Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein YqgA or Stm3115 or Sty3272 SWALL:Q8XGN5 (EMBL:AE008843) (235 aa) fasta scores: E(): 9.4e-36%2C43.83 38d in 235 aa gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=YE1909 YE1910 YE1910 YE1910 2091649 2091861 - conserved hypothetical protein gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=YE1910 YE1912 YE1912 thrS thrS 2092185 2094113 + threonyl-tRNA synthetase gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=YE1912 YE1913 YE1913 infC infC 2094117 2094668 + translation initiation factor Similar to Yersinia pestis translation initiation factor IF-3 InfC or Ypo2432 or Y1904 SWALL:IF3_YERPE (SWALL:Q8ZDW6) (183 aa) fasta scores: E(): 1.4e-62%2C 98.89 id in 181 aa and Serratia marcescens translation initiation factor IF-3 InfC SWALL:IF3_SERMA (SWALL:P33320) (183 aa) fasta scores: E(): 4.4e-59%2C 93.37 38d in 181 aa. The start codon is an AUU%2C as with the E. coli IF-3 InfC. gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=YE1913 YE1914 YE1914 rpmI rpmI 2094765 2094962 + 50S ribosomal protein L35 gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=YE1914 YE1915 YE1915 rplT rplT 2095000 2095356 + 50S ribosomal protein L20 gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=YE1915 YE1916 YE1916 pheS pheS 2095821 2096804 + phenylalanyl-tRNA synthetase alpha chain gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=YE1916 YE1917 YE1917 pheT pheT 2096819 2099206 + phenylalanyl-tRNA synthetase beta chain gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=YE1917 YE1918 YE1918 ihfA ihfA 2099211 2099507 + integration host factor alpha-subunit gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=YE1918 YE1919 YE1919 trp1400A trp1400A 2099704 2099994 + IS1400 transposase A Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 4.7e-32%2C 97.91 38d in 96 aa%2Cand to Yersinia pestis putative transposase Y0084 or Ypcd1.93 SWALL:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 7.8e-15%2C 52.27 38d in 88 aa gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=YE1919 YE1920 YE1920 trp1400B trp1400B 2100045 2100529 + IS1400 transposase B (pseudogene) Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 2.5e-56%2C 97.18 38d in 142 aa. Also similar to many others e.g. Yersinia pestis putative transposase Ypcd1.64 SWALL:Q9RI18 (EMBL:AL117189) (144 aa) fasta scores: E(): 5.9e-27%2C 58.19 38d in 122 aa. Note the differing predicted start codons for this CDS compared with that previously published. This IS1400 element is a partial sequence. Consequently the predicted product of this CDS lacks the C-terminal ~~46 residues. pseudogene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=YE1920 YE1921 YE1921 YE1921 2100789 2101721 - putative transposase Similar to many proteins of undefined function%2Cthat are thought to represent a novel family of transposases%2Cincluding: Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 1.8e-100%2C 84.83 38d in 310 aa and to Salmonella typhimurium hypothetical protein Pslt051 SWALL:YTL2_SALTY (SWALL:P37415) (313 aa) fasta scores: E(): 7.2e-73%2C 61.03 38d in 308 aa. Additional copies of this element are represented by YE1924%2C YE1655 and YE3497. There are also two partial sequences represented by YE1656 and YE1925. gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=YE1921 YE1922 YE1922 YE1922 2101983 2102270 + putative proteic toxin protein Similar to Escherichia coli plasmid Rts1 killer protein HigB%2C part of the HigBA toxin/antidote plasmid maintenance system%2C SWALL:Q52305 (EMBL:U43847) (92 aa) fasta scores: E(): 3.3e-17%2C 56.84 38d in 95 aa%2C and to Xylella fastidiosa proteic killer protein Xf0721 SWALL:Q9PFE9 (EMBL:AE003914) (105 aa) fasta scores: E(): 1.7e-09%2C 39.58 38d in 96 aa gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=YE1922 YE1923 YE1923 YE1923 2102270 2102584 + antidote protein Similar to Escherichia coli plasmid Rts1 antidote protein HigA SWALL:Q52306 (EMBL:U43847) (104 aa) fasta scores: E(): 2.2e-08%2C 38.63 38d in 88 aa%2C Escherichia coli hypothetical protein YddM or b1477 SWALL:YDDM_ECOLI (SWALL:P76125) (94 aa) fasta scores: E(): 3e-10%2C 42.85 38d in 91 aa gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=YE1923 YE1924 YE1924 YE1924 2102751 2103647 - putative transposase Similar to many proteins%2C of undefined function%2Cthat are thought to represent a novel family of transposases%2C including: Escherichia coli hypothetical protein Yhga or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 3.9e-62%2C 55.97 38d in 293 aa%2CYersinia pestis putative transposase Y1072 or Ypmt1.71 SWALL:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 5.7e-63%2C 57.18 38d in 320 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 4.2e-55%2C 51.87 id in 293 aa. Additional copies of this element are represented by YE1921%2C YE1655 and YE3497. There are also two partial sequences represented by YE1656 and YE1925. gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=YE1924 YE1925 YE1925 YE1925 2103853 2103990 - putative transposase (remnant) This CDS appears to be a gene remnant. Similar to the very C-termini of many proteins%2C of undefined function%2C that are thought to represent a novel family of transposases%2C including: Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 1.7e-05%2C 55.55 38d in 45 aa%2C Yersinia pestis putative transposase Y1072 or Ypmt1.71 SWALL:O68786 (EMBL:AF074611) (328 aa) fasta scores: E(): 2%2C 38.77 38d in 49 aa and to Escherichia coli hypothetical protein YfaD or b2244 SWALL:YFAD_ECOLI (SWALL:P37014) (299 aa) fasta scores: E(): 3.9%2C 34.88 38d in 43 aa.Additional copies of this element are represented by YE1921%2C YE1655 and YE3497. Another partial sequence is represented by YE1656. pseudogene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=YE1925 YE1926 YE1926 YE1926 2104468 2104788 - hypothetical protein doubtful CDS with no significant database hits gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=YE1926 YE1927 YE1927 YE1927 2105114 2105293 + hypothetical protein doubtful CDS with no significant database hits gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=YE1927 YE1928 YE1928 YE1928 2105365 2105625 + DinJ-like protein Similar to Escherichia coli DNA-damage-inducible protein J DinJ or b0226 SWALL:DINJ_ECOLI (SWALL:Q47150) (86 aa) fasta scores: E(): 1.4e-24%2C 82.55 38d in 86 aa and to Yersinia pestis plasmid pYV Orf11 SWALL:Q9RPP0 (EMBL:AF152923) (86 aa) fasta scores: E(): 1.5e-25%2C 84.88 id in 86 aa gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=YE1928 YE1929 YE1929 YE1929 2105632 2105910 + conserved hypothetical protein Similar to Yersinia pestis plasmid pYV Orf10 SWALL:Q9RPN9 (EMBL:AF152923) (92 aa) fasta scores: E(): 2.8e-31%2C 85.87 38d in 92 aa and to Escherichia coli hypothetical protein%2C endcoded adjacent to dinJ%2C YafQ or b0225 SWALL:YAFQ_ECOLI (SWALL:Q47149) (92 aa) fasta scores: E(): 1.8e-27%2C 77.52 38d in 89 aa gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=YE1929 YE1930 YE1930 YE1930 2105953 2106567 - phage tail fiber assembly protein Similar to the tail fibre assembly proteins from many lambdoid phage: Escherichia coli tail fiber assembly protein homolog from lambdoid prophage Rac TfaR or b1373 SWALL:TFAR_ECOLI (SWALL:P77163) (191 aa) fasta scores: E(): 4.2e-19%2C 38.29 38d in 188 aa%2C Escherichia coli tail fiber assembly protein homolog from lambdoid prophage E14 tfae or b1156 SWALL:TFAE_ECOLI (SWALL:P09153) (200 aa) fasta scores: E(): 2.5e-20%2C 36.5 38d in 200 aa and to Yersinia pestis lambda tail fiber assembly protein G Y1053 or Ypmt1.03C SWALL:O68721 (EMBL:AF074611) (202 aa) fasta scores: E(): 5.4e-20%2C 38.74 38d in 191 aa gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=YE1930 YE1931 YE1931 YE1931 2106745 2107629 - probable phage tail fiber protein Similar to the variable tail fiber proteins of many P2 bacteriophage: Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 2e-16%2C 35.88 38d in 248 aa%2C Salmonella typhi probable variable tail fibre protein Sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 2.1e-28%2C57.55 38d in 139 aa and Salmonella typhimurium Fels-2 prophage: similar to tail fiber protein in phage P2 stm2706 SWALL:Q8ZMU5 (EMBL:AE008823) (524 aa) fasta scores: E(): 5.3e-28%2C 57.55 38d in 139 aa gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=YE1931 YE1933 YE1933 putA putA 2108495 2112484 - bifunctional PutA protein [includes: proline dehydrogenase and delta-1-pyrroline-5-carboxylate gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=YE1933 YE1934 YE1934 putP putP 2113011 2114495 + proline permease gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=YE1934 YE1935 YE1935 tpn1330 tpn1330 2114588 2115781 - transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.49 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2a is10 orf s0034 or cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.7e-113%2C 68.26 38d in 397 aa gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=YE1935 YE1936 YE1936 YE1936 2115973 2116302 - conserved hypothetical protein gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=YE1936 YE1937 YE1937 YE1937 2116306 2117373 - conserved hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo1258 SWALL:Q8ZGM9 (EMBL:AJ414147) (382 aa) fasta scores: E(): 7.2e-48%2C 57.58 38d in 257 aa and to Yersinia pestis hypothetical protein Ypo0639 SWALL:Q8ZI76 (EMBL:AJ414143) (460 aa) fasta scores: E(): 4.8e-33%2C39.13 38d in 345 aa gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=YE1937 YE1938 YE1938 YE1938 2118101 2118961 + putative membrane protein gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=YE1938 YE1939 YE1939 YE1939 2118978 2120108 + putative exported protein gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=YE1939 YE1940 YE1940 YE1940 2120360 2121415 + conserved hypothetical protein gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=YE1940 YE1941 YE1941 wrbA wrbA 2121474 2122073 - trp repressor binding protein gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=YE1941 YE1942 YE1942 YE1942 2122243 2122725 - putative DNA-binding protein The database hits for the predicted product of this CDS are restricted to its H-T-H DNA-binding motif: Vibrio cholerae biovar eltor hypothetical protein SWALL:Q939J0 (EMBL:AY035340) (136 aa) fasta scores: E(): 8.6e-06%2C 53.7 id in 54 aa and to Salmonella typhimurium fels-1 prophage%2Cpredicted transcriptional regulator Stm0898 SWALL:Q8ZQI4 (EMBL:AE008737) (231 aa) fasta scores: E(): 0.041%2C 42.62 id in 61 aa gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=YE1942 YE1943 YE1943 YE1943 2123059 2124237 + putative exported protein gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=YE1943 YE1944 YE1944 YE1944 2124441 2125778 - putative membrane permease Similar to many permeases including: Escherichia coli%2C and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 9.9e-46%2C 37.35 38d in 423 aa%2CEscherichia coli putative purine permease YcdG or b1006 SWALL:YCDG_ECOLI (SWALL:P75892) (442 aa) fasta scores: E(): 6.4e-121%2C 78.6 38d in 430 aa and to Bacillus caldolyticus uracil permease PyrP SWALL:PYRP_BACCL (SWALL:P41006) (432 aa) fasta scores: E(): 3.9e-48%2C 37.85 id in 428 aa gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=YE1944 YE1945 YE1945 hpaC hpaC 2125848 2126396 - 4-hydroxyphenylacetate 3-monooxygenase coupling protein gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=YE1945 YE1946 YE1946 YE1946 2126447 2127037 - putative oxidoreductase Weakly similar to Escherichia coli oxygen-insensitive NAD NfnB or nfsi or nfsb or ntr or dpra or b0578 SWALL:NFNB_ECOLI (SWALL:P38489) (217 aa) fasta scores: E(): 1.1%2C 25 38d in 180 aa. Also similar to many other proposed dehydrogenases e.g. Escherichia coli putative NADH dehydrogenase/NAD ycdi or b1008 SWALL:YCDI_ECOLI (SWALL:P75894) (196 aa) fasta scores: E(): 2.6e-53%2C 67.85 38d in 196 aa gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=YE1946 YE1947 YE1947 YE1947 2127049 2127885 - putative hydrolase Similar to Agrobacterium tumefaciens hydrolase Atu2497 or agr_c_4537 SWALL:Q8UCI8 (EMBL:AE009196) (281 aa) fasta scores: E(): 2e-46%2C 46.48 38d in 256 aa and Acinetobacter calcoaceticus 3-oxoadipate enol-lactonase I PcaD SWALL:ELH1_ACICA (SWALL:Q59093) (266 aa) fasta scores: E(): 2.4e-11%2C 28.8 38d in 250 aa gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=YE1947 YE1948 YE1948 YE1948 2127918 2128307 - conserved hypothetical protein Similar to many proteins of undefined function including: Caulobacter crescentus hypothetical protein Cc2796 SWALL:Q9A4N4 (EMBL:AE005945) (129 aa) fasta scores: E(): 2.3e-37%2C 75.78 38d in 128 aa and Escherichia coli hypothetical protein YdK or b1010 SWALL:YCDK_ECOLI (SWALL:P75896) (128 aa) fasta scores: E(): 7.6e-37%2C 72.65 id in 128 aa gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=YE1948 YE1949 YE1949 YE1949 2128354 2129046 - putative isochorismatase Similar to many proposed isochorismatases including: Escherichia coli hypothetical isochorismatase family protein YcdL or b1011 SWALL:YCDL_ECOLI (SWALL:P75897) (230 aa) fasta scores: E(): 1.7e-72%2C 79.73 id in 222 aa and to Escherichia coli O157:H7 hypothetical isochorismatase family protein YcdL or z1510 or ecs1257 SWALL:YCDL_ECO57 (SWALL:Q8XAU3) (230 aa) fasta scores: E(): 7.8e-72%2C 78.82 38d in 222 aa gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=YE1949 YE1950 YE1950 ssuD ssuD 2129142 2130245 - alkanesulfonate monooxygenase gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=YE1950 YE1951 YE1951 YE1951 2130561 2131229 + putative TetR-family transcriptional regulatory protein Similar to many proposed transcriptional regulators including: Salmonella typhimurium putative transcriptional repressor YcdC or Stm1122 SWALL:Q8ZQ38 (EMBL:AE008748) (212 aa) fasta scores: E(): 7.6e-51%2C 61.83 38d in 207 aa%2CEscherichia coli hypothetical transcriptional regulator YcdC or b1013 SWALL:YCDC_ECOLI (SWALL:P75899) (212 aa) fasta scores: E(): 1.2e-48%2C 60.89 38d in 202 aa and Agrobacterium tumefaciens transcriptional regulator%2C TetR family atu2384 or agr_c_4325 SWALL:Q8UCU9 (EMBL:AE009186) (213 aa) fasta scores: E(): 5e-33%2C 43.56 38d in 202 aa gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=YE1951 YE1952 YE1952 cycA cycA 2131475 2132905 - D-serine/D-alanine/glycine transporter gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=YE1952 YE1953 YE1953 YE1953 2133792 2134244 - bacteriophage late control protein (fragment) Similar to the very C-terminus of Bacteriophage P2 phage protein D SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 4.1e-38%2C 75.16 38d in 149 aa and to Bacteriophage 186 late control protein D SWALL:VPD_BP186 (SWALL:P21679) (389 aa) fasta scores: E(): 7.4e-39%2C 75.67 id in 148 aa pseudogene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=YE1953 YE1954 YE1954 YE1954 2134253 2134506 - bacteriophage major tail sheath protein (fragment) Similar to the very N-termini of Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.6e-23%2C 84.33 id in 83 aa and Bacteriophage 186 similar to p2 tail sheath protein FI SWALL:Q37844 (EMBL:U32222) (392 aa) fasta scores: E(): 1.5e-22%2C 83.33 38d in 84 aa. Note this CDS also contains a frameshift mutation following codon 54 pseudogene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=YE1954 YE1955 YE1955 YE1955 2134685 2135071 - hypothetical protein no significant database hits gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=YE1955 YE1956 YE1956 YE1956 2135627 2136328 - putative LuxR-family transcriptional regulatory protein Weakly similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.6e-09%2C 26.6 id in 203 aa gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=YE1956 YE1957 YE1957 YE1957 2136413 2137696 - putative purine and pyrimidine permease Similar to Escherichia coli cytosine permease CodB or b0336 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 6.5e-20%2C 28.06 38d in 424 aa and to Bacillus halodurans cytosine permease bh1882 SWALL:Q9KBP3 (EMBL:AP001513) (445 aa) fasta scores: E(): 1.5e-31%2C31.83 38d in 377 aa gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=YE1957 YE1958 YE1958 YE1958 2137909 2138673 + putative LuxR-family transcriptional regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 1.5e-09%2C27.57 38d in 214 aa and Vibrio cholerae transcriptional regulator%2C LuxR family vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 1.3e-07%2C24.05 38d in 237 aa gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=YE1958 YE1959 YE1959 YE1959 2138910 2139644 - conserved hypothetical protein Similar to several including: Stigmatella aurantiaca methyl transferase SWALL:CAD19079 (EMBL:AJ421825) (242 aa) fasta scores: E(): 2e-54%2C 54.13 id in 242 aa and Brucella melitensis ubiquinone/menaquinone biosynthesis methyltransferase UbiE bmei1834 SWALL:Q8YEP4 (EMBL:AE009616) (262 aa) fasta scores: E(): 7.4e-53%2C 52.91 38d in 240 aa gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=YE1959 YE1960 YE1960 YE1960 2140048 2140545 + putative exported protein gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=YE1960 YE1961 YE1961 YE1961 2140627 2140956 - conserved hypothetical protein Similar to Ralstonia solanacearum hypothetical protein Rsc1958 or rs03532 SWALL:Q8XY05 (EMBL:AL646067) (113 aa) fasta scores: E(): 1.3e-28%2C 63.71 38d in 113 aa gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=YE1961 YE1962 YE1962 amyA amyA 2141101 2142600 + alpha-amylase Similar to Escherichia coli cytoplasmic alpha-amylase AmyA or b1927 SWALL:AMY2_ECOLI (SWALL:P26612) (495 aa) fasta scores: E(): 1.1e-141%2C65.72 38d in 493 aa%2C Salmonella typhimurium cytoplasmic alpha-amylase AmyA or stm1963 SWALL:AMY2_SALTY (SWALL:P26613) (494 aa) fasta scores: E(): 1.5e-141%2C 65.3 id in 490 aa and to Bacillus licheniformis alpha-amylase precursor AmyS or AmyL SWALL:AMY_BACLI (SWALL:P06278) (512 aa) fasta scores: E(): 2.9e-80%2C 42.19 38d in 493 aa gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=YE1962 YE1963 YE1963 YE1963 2142879 2143127 - exported protein doubtful CDS with no significant database hits gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=YE1963 YE1964 YE1964 acnA acnA 2143724 2146396 + aconitate hydratase 1 gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=YE1964 YE1965 YE1965 ribA ribA 2146643 2147233 - GTP cyclohydrolase II gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=YE1965 YE1966 YE1966 pgpB pgpB 2147575 2148336 + phosphatidylglycerophosphatase B gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=YE1966 YE1967 YE1967 YE1967 2148532 2148843 + putative membrane protein gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=YE1967 YE1968 YE1968 YE1968 2148850 2150019 + conserved hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=YE1968 YE1969 YE1969 YE1969 2150076 2150366 - conserved hypothetical protein gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=YE1969 YE1970 YE1970 YE1970 2150571 2151032 - putative DNA-binding protein Similar to many putative transcriptional regulators including: Salmonella typhi putative DNA-binding protein Sty1459 SWALL:Q8Z752 (EMBL:AL627270) (178 aa) fasta scores: E(): 1.4e-36%2C 54.34 38d in 184 aa%2C Vibrio cholerae transcriptional regulator%2C hth_3 family Vc1968 SWALL:Q9KQN0 (EMBL:AE004272) (181 aa) fasta scores: E(): 3.6e-24%2C 46.62 38d in 178 aa and Ralstonia solanacearum putative transcription regulator protein Rsp0962 or Rs02293 SWALL:Q8XR97 (EMBL:AL646082) (182 aa) fasta scores: E(): 1.9e-13%2C 33.53 38d in 164 aa gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=YE1970 YE1971 YE1971 YE1971 2151310 2152512 + probable membrane transport protein Similar to many including: Acinetobacter calcoaceticus benzoate membrane transport protein BenE SWALL:BENE_ACICA (SWALL:P07775) (394 aa) fasta scores: E(): 1.8e-53%2C 41.62 38d in 382 aa and to Salmonella typhimurium putative benzoate membrane transport protein Stm1606 SWALL:Q8ZPC5 (EMBL:AE008770) (392 aa) fasta scores: E(): 2e-79%2C 58.53 38d in 381 aa gene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=YE1971 YE1972 YE1972 YE1972 2152586 2152846 - putative exported protein Similar to many including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein precursor YcfR or B1112 or Z1751 or Ecs1490 SWALL:YCFR_ECOLI (SWALL:P75953) (85 aa) fasta scores: E(): 7.1e-12%2C 57.47 id in 87 aa and to Yersinia pestis putative exported protein Ypo2521 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 1e-10%2C 47.67 38d in 86 aa gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=YE1972 YE1973 YE1973 pyrF pyrF 2153197 2153937 + orotidine 5'-phosphate decarboxylase gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=YE1973 YE1974 YE1974 YE1974 2153934 2154272 + translation initiation factor SUI1 family protein gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=YE1974 YE1975 YE1975 osmB osmB 2154538 2154750 - osmotically inducible lipoprotein B precursor gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=YE1975 YE1976 YE1976 araD araD 2155187 2155882 + L-ribulose-5-phosphate 4-epimerase gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=YE1976 YE1977 YE1977 YE1977 2155909 2156157 - conserved hypothetical protein gene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=YE1977 YE1978 YE1978 YE1978 2156203 2156949 - putative DeoR-family regulatory protein Similar to many DeoR-family regulatory proteins including: Escherichia coli glucitol operon repressor SrlR or GutR or b2707 SWALL:SRLR_ECOLI (SWALL:P15082) (257 aa) fasta scores: E(): 1.2e-19%2C 33.2 38d in 256 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative regulatory protein%2C DeoR family Stm1704 or Sty1347 SWALL:Q8XEP5 (EMBL:AE008775) (250 aa) fasta scores: E(): 1.7e-54%2C 60.72 38d in 247 aa and Pseudomonas aeruginosa glycerol-3-phosphate regulon repressor GlpR or pa3583 SWALL:GLPR_PSEAE (SWALL:Q51391) (251 aa) fasta scores: E(): 2.1e-17%2C 29.2 38d in 250 aa gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=YE1978 YE1979 YE1979 mipB mipB 2157145 2157810 + putative transaldolase gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=YE1979 YE1980 YE1980 YE1980 2158046 2158378 - conserved hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2233 SWALL:Q8ZEE0 (EMBL:AJ414151) (101 aa) fasta scores: E(): 4.2e-29%2C 70.9 38d in 110 aa and to Yersinia pestis KIM hypothetical Y2075 SWALL:AAM85639 (EMBL:AE013810) (109 aa) fasta scores: E(): 4.4e-29%2C 70 id in 110 aa gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=YE1980 YE1981 YE1981 cstA cstA 2158371 2160437 - putative carbon starvation protein A gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=YE1981 YE1982 YE1982 rnb rnb 2160853 2162787 - exoribonuclease II gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=YE1982 YE1983 YE1983 YE1983 2162982 2165303 - putative oxidoreductase Similar to many including: Pseudomonas aeruginosa probable oxidoreductase Pa5181 SWALL:Q9HU08 (EMBL:AE004931) (773 aa) fasta scores: E(): 1.9e-184%2C60.13 38d in 760 aa%2C Ralstonia solanacearum putative formate dehydrogenase oxidoreductase protein Rsp1048 or Rs06130 SWALL:Q8XR20 (EMBL:AL646082) (779 aa) fasta scores: E(): 3.5e-164%2C 55.89 38d in 764 aa and to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 3.4e-13%2C 25.69 38d in 685 aa gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=YE1983 YE1984 YE1984 YE1984 2165838 2167073 + putative membrane protein no significant database hits. Note the coiled-coil domains between residues 181..192%2C 237..256 and 292..312 gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=YE1984 YE1985 YE1985 YE1985 2167117 2168151 + hypothetical protein no significant database hits gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=YE1985 YE1986 YE1986 YE1986 2168315 2169385 - hypothetical protein no significant database hits gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=YE1986 YE1987 YE1987 nth nth 2169525 2170166 - endonuclease III gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=YE1987 YE1988 YE1988 YE1988 2170163 2170864 - putative membrane protein gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=YE1988 YE1989 YE1989 YE1989 2170861 2171490 - putative exported protein gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=YE1989 YE1990 YE1990 YE1990 2171500 2172555 - putative integral membrane protein gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=YE1990 YE1991 YE1991 YE1991 2173084 2173971 + putative AraC-family transcriptional regulatory protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=YE1991 YE1992 YE1992 YE1992 2174009 2176102 - putative iron-sulfur binding NADH dehydrogenase gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=YE1992 YE1993 YE1993 YE1993 2176095 2176718 - putative iron-sulfur protein gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=YE1993 YE1994 YE1994 YE1994 2176718 2177299 - putative membrane protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=YE1994 YE1996 YE1996 YE1996 2177649 2178092 - putative membrane protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=YE1996 YE1997 YE1997 YE1997 2178160 2179965 - probable formate--tetrahydrofolate ligase Similar to many Prokaryotic and Eukaryotic Spinacia oleracea mono-functional formate--tetrahydrofolate ligase SWALL:FTHS_SPIOL (SWALL:P28723) (636 aa) fasta scores: E(): 2.8e-69%2C 44.87 38d in 624 aa%2C Vibrio cholerae formate--tetrahydrofolate ligase Vca0614 SWALL:Q9KLX7 (EMBL:AE004391) (599 aa) fasta scores: E(): 4.7e-118%2C54.37 38d in 583 aa and to Arabidopsis thaliana 10-formyltetrahydrofolate synthetase ThfS or f11f12.17 or f17j6.2 or at1g50480 SWALL:Q9SPK5 (EMBL:AF162279) (634 aa) fasta scores: E(): 1.8e-71%2C 45.41 38d in 621 aa gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=YE1997 YE1998 YE1998 YE1998 2180469 2182595 + putative RTX-family toxin transporter gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=YE1998 YE1999 YE1999 YE1999 2182592 2183986 + hemolysin transport protein Highly similar to many hemolysin transport proteins including: Vibrio cholerae hemolysin secretion protein RtxD protein SWALL:Q9X4W5 (EMBL:AF119150) (467 aa) fasta scores: E(): 1.9e-55%2C 39.77 38d in 450 aa%2C Pasteurella haemolytica leukotoxin secretion protein D LktD SWALL:HLYD_PASHA (SWALL:P16534) (478 aa) fasta scores: E(): 2e-42%2C 34.79 38d in 457 aa and Escherichia coli hemolysin secretion protein D%2C plasmid HlyD SWALL:HLYD_ECOLI (SWALL:P06739) (478 aa) fasta scores: E(): 1.7e-41%2C 36.32 38d in 457 aa gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=YE1999 YE2000 YE2000 YE2000 2183989 2186121 + putative toxin transport protein gene gene1972 http://www.ncbi.nlm.nih.gov/gene/?term=YE2000 YE2001 YE2001 araA araA 2186355 2187857 - L-arabinose isomerase gene gene1973 http://www.ncbi.nlm.nih.gov/gene/?term=YE2001 YE2002 YE2002 araB araB 2187915 2189567 - L-ribulokinase gene gene1974 http://www.ncbi.nlm.nih.gov/gene/?term=YE2002 YE2003 YE2003 araF araF 2190066 2191049 + L-arabinose-binding periplasmic protein precursor gene gene1975 http://www.ncbi.nlm.nih.gov/gene/?term=YE2003 YE2004 YE2004 araG araG 2191221 2192699 + L-arabinose transport ATP-binding protein gene gene1976 http://www.ncbi.nlm.nih.gov/gene/?term=YE2004 YE2005 YE2005 araH araH 2192867 2193775 + L-arabinose transport system permease protein gene gene1977 http://www.ncbi.nlm.nih.gov/gene/?term=YE2005 YE2006 YE2006 araC araC 2193899 2194831 + arabinose operon regulatory protein gene gene1978 http://www.ncbi.nlm.nih.gov/gene/?term=YE2006 YE2007 YE2007 YE2007 2194933 2195982 + putative oxidoreductase gene gene1979 http://www.ncbi.nlm.nih.gov/gene/?term=YE2007 YE2008 YE2008 YE2008 2196154 2197167 + putative membrane protein gene gene1980 http://www.ncbi.nlm.nih.gov/gene/?term=YE2008 YE2009 YE2009 add add 2197329 2198327 - adenosine deaminase Similar to Escherichia coli adenosine deaminase Add or b1623 SWALL:ADD_ECOLI (SWALL:P22333) (333 aa) fasta scores: E(): 1.8e-100%2C 77.27 38d in 330 aa and to Salmonella typhi adenosine deaminase Add or Sty1658 SWALL:ADD_SALTI (SWALL:Q8Z6R2) (333 aa) fasta scores: E(): 2.3e-103%2C 79.39 38d in 330 aa gene gene1981 http://www.ncbi.nlm.nih.gov/gene/?term=YE2009 YE2010 YE2010 YE2010 2198525 2199721 - putative aminotransferase gene gene1982 http://www.ncbi.nlm.nih.gov/gene/?term=YE2010 YE2011 YE2011 malX malX 2199896 2201506 - PTS system%2C maltose and glucose-specific IIabc component Highly similar to Escherichia coli PTS system%2Cmaltose and glucose-specific IIabc component MalX or b1621 SWALL:PTOA_ECOLI (SWALL:P19642) (530 aa) fasta scores: E(): 1.3e-168%2C 79.51 38d in 532 aa and to Bacillus subtilis PTS system%2C maltose and glucose-specific IIabc PtsG or Ptsx or crr SWALL:PTGA_BACSU (SWALL:P20166) (699 aa) fasta scores: E(): 1.2e-67%2C 39.04 38d in 525 aa gene gene1983 http://www.ncbi.nlm.nih.gov/gene/?term=YE2011 YE2012 YE2012 malI malI 2201822 2202853 + maltose regulon regulatory protein Similar to Escherichia coli maltose regulon regulatory protein MalI or b1620 SWALL:MALI_ECOLI (SWALL:P18811) (342 aa) fasta scores: E(): 1.1e-68%2C 55.19 id in 337 aa and to Thermomonospora fusca transcription regulator CelR SWALL:CELR_THEFU (SWALL:O87590) (340 aa) fasta scores: E(): 2.2e-21%2C 30.83 38d in 347 aa gene gene1984 http://www.ncbi.nlm.nih.gov/gene/?term=YE2012 YE2013 YE2013 YE2013 2203043 2203402 - hypothetical protein no significant database hits gene gene1985 http://www.ncbi.nlm.nih.gov/gene/?term=YE2013 YE2014 YE2014 YE2014 2203551 2205125 - putative exported protein gene gene1986 http://www.ncbi.nlm.nih.gov/gene/?term=YE2014 YE2015 YE2015 manA manA 2205357 2206532 - mannose-6-phosphate isomerase gene gene1987 http://www.ncbi.nlm.nih.gov/gene/?term=YE2015 YE2016 YE2016 fumC fumC 2206758 2208152 + fumarate hydratase%2C class II gene gene1988 http://www.ncbi.nlm.nih.gov/gene/?term=YE2016 YE2017 YE2017 YE2017 2208458 2209177 + putative LuxR-family transcriptional regulatory protein Weakly similar to other LuxR-family transcriptional regulators including: Vibrio cholerae Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 2.5e-08%2C24.88 38d in 221 aa and Pseudomonas aeruginosa probable transcriptional regulatorPa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 3.4e-06%2C25.98 38d in 204 aa gene gene1989 http://www.ncbi.nlm.nih.gov/gene/?term=YE2017 YE2018 YE2018 tus tus 2209263 2210192 - DNA replication terminus site-binding protein gene gene1990 http://www.ncbi.nlm.nih.gov/gene/?term=YE2018 YE2019 YE2019 blaA blaA 2210344 2211228 - beta-lactamase precursor Previously sequenced as Yersinia enterocolitica beta-lactamase precursor BlaA SWALL:BLAC_YEREN (SWALL:Q01166) (294 aa) fasta scores: E(): 1.2e-107%2C93.87 38d in 294 aa. Also highly similar to Burkholderia pseudomallei beta-lactamase 1c bla-bps-1C SWALL:Q8VVD0 (EMBL:AF441238) (295 aa) fasta scores: E(): 2.6e-62%2C58.47 38d in 289 aa gene gene1991 http://www.ncbi.nlm.nih.gov/gene/?term=YE2019 YE2020 YE2020 YE2020 2211427 2211816 - putative membrane protein Weakly similar to Streptomyces coelicolor putative integral membrane protein Sco6327 or sc10h5.03C SWALL:O86495 (EMBL:AL031232) (154 aa) fasta scores: E(): 1.8e-10%2C 36.44 38d in 118 aa gene gene1992 http://www.ncbi.nlm.nih.gov/gene/?term=YE2020 YE2021 YE2021 YE2021 2212003 2213295 - putative membrane protein gene gene1993 http://www.ncbi.nlm.nih.gov/gene/?term=YE2021 YE2022 YE2022 YE2022 2213472 2214383 + probable LysR-family transcriptional regulator gene gene1994 http://www.ncbi.nlm.nih.gov/gene/?term=YE2022 YE2023 YE2023 mlc mlc 2214604 2215821 + putative ROK family transcriptional regulatory protein gene gene1995 http://www.ncbi.nlm.nih.gov/gene/?term=YE2023 YE2024 YE2024 bioD bioD 2216044 2216712 + putative dethiobiotin synthetase gene gene1996 http://www.ncbi.nlm.nih.gov/gene/?term=YE2024 YE2025 YE2025 YE2025 2216733 2218013 - putative membrane protein gene gene1997 http://www.ncbi.nlm.nih.gov/gene/?term=YE2025 YE2025A YE2025A YE2025A 2218087 2218335 - conserved hypothetical protein gene gene1998 http://www.ncbi.nlm.nih.gov/gene/?term=YE2025A YE2026 YE2026 YE2026 2218424 2218795 - putative exported protein Highly similar to Yersinia pseudotuberculosis hypothetical 14.2 kDa protein SWALL:Q93AP0 (EMBL:AF418982) (124 aa) fasta scores: E(): 7.5e-41%2C 82.11 38d in 123 aa and to Escherichia coli hypothetical protein YnfB or b1583 SWALL:YNFB_ECOLI (SWALL:P76170) (113 aa) fasta scores: E(): 2.5e-14%2C 43.96 38d in 116 aa gene gene1999 http://www.ncbi.nlm.nih.gov/gene/?term=YE2026 YE2026A YE2026A YE2026A 2218992 2219167 + conserved hypothetical exported protein (fragment) only N terminus present%2C frameshift pseudogene gene2000 http://www.ncbi.nlm.nih.gov/gene/?term=YE2026A YE2027 YE2027 YE2027 2219164 2219490 + putative exported protein Similar to many including: Salmonella typhi hypothetical protein YnfA or sty1558 SWALL:Q8Z6Z2 (EMBL:AL627270) (108 aa) fasta scores: E(): 3.2e-33%2C 80 id in 105 aa%2C Escherichia coli hypothetical protein YnfA or b1582 SWALL:YNFA_ECOLI (SWALL:P76169) (108 aa) fasta scores: E(): 4.3e-33%2C 80 38d in 105 aa and to Escherichia coli%2C and Klebsiella aerogenes quaternary ammonium compound-resistance protein QacE SWALL:QACE_ECOLI (SWALL:Q57225) (110 aa) fasta scores: E(): 9.1%2C 26.47 38d in 102 aa gene gene2001 http://www.ncbi.nlm.nih.gov/gene/?term=YE2027 YE2028 YE2028 YE2028 2219521 2220276 - putative oxidoreductase Similar to many including: Yersinia pseudotuberculosis putative oxidoreductase SWALL:Q9AGD6 (EMBL:AF335466) (249 aa) fasta scores: E(): 7.2e-86%2C 91.9 id in 247 aa and to Escherichia coli probable oxidoreductase YdfG or b1539 SWALL:YDFG_ECOLI (SWALL:P39831) (248 aa) fasta scores: E(): 3.4e-70%2C 75.8 id in 248 aa gene gene2002 http://www.ncbi.nlm.nih.gov/gene/?term=YE2028 YE2029 YE2029 YE2029 2220356 2221831 - putative membrane transport protein Similar to many membrane transport proteins including: Rhizobium meliloti putative transport transmembrane protein R02571 or Smc02343 SWALL:Q92MP2 (EMBL:AL591791) (479 aa) fasta scores: E(): 3.1e-73%2C41.94 38d in 484 aa and to Brucella melitensis methylenomycin A resistance protein Bmeii0596 SWALL:Q8YCD6 (EMBL:AE009695) (469 aa) fasta scores: E(): 1.4e-68%2C39.13 38d in 460 aa gene gene2003 http://www.ncbi.nlm.nih.gov/gene/?term=YE2029 YE2030 YE2030 YE2030 2222032 2222310 - putative exported protein Similar to Escherichia coli hypothetical protein YahO precursor or b0329 SWALL:YAHO_ECOLI (SWALL:P75694) (91 aa) fasta scores: E(): 8.4e-13%2C 53.26 38d in 92 aa and to Yersinia pestis putative exported protein Ypo0130 SWALL:Q8ZJH7 (EMBL:AJ414141) (89 aa) fasta scores: E(): 1.2e-08%2C 47.25 38d in 91 aa gene gene2004 http://www.ncbi.nlm.nih.gov/gene/?term=YE2030 YE2032 YE2032 YE2032 2222976 2223332 - Phage/plasmid maintenance toxin/antidote system protein (toxin) Similar to Bacteriophage P1 death on curing protein Doc SWALL:DOC_BPP1 (SWALL:Q06259) (126 aa) fasta scores: E(): 3e-11%2C 40.51 38d in 116 aa and to Salmonella typhimurium Stm3558 SWALL:Q8ZLF1 (EMBL:AE008864) (122 aa) fasta scores: E(): 1.4e-13%2C 44.44 38d in 117 aa gene gene2005 http://www.ncbi.nlm.nih.gov/gene/?term=YE2032 YE2033 YE2033 YE2033 2223329 2223547 - Phage/plasmid maintenance toxin/antidote system protein (antidote) Similar to Bacteriophage P1 prevent host death protein Phd SWALL:PHD_BPP1 (SWALL:Q06253) (73 aa) fasta scores: E(): 0.007%2C 47.27 38d in 55 aa and to Salmonella typhimurium hypothetical protein Stm3559 SWALL:YHHV_SALTY (SWALL:P40819) (75 aa) fasta scores: E(): 0.0012%2C 38.35 id in 73 aa gene gene2006 http://www.ncbi.nlm.nih.gov/gene/?term=YE2033 YE2034 YE2034 YE2034 2224042 2224752 + putative LuxR-family transcriptional regulatory protein Weakly similar to Pseudomonas aeruginosa probable transcriptional regulator Pa1347 SWALL:Q9I3Z7 (EMBL:AE004564) (230 aa) fasta scores: E(): 6.2e-09%2C24.88 38d in 209 aa and to Vibrio cholerae transcriptional regulator%2C LuxR family Vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 3.7e-06%2C21.87 38d in 224 aa gene gene2007 http://www.ncbi.nlm.nih.gov/gene/?term=YE2034 YE2035 YE2035 YE2035 2224870 2226117 - putative membrane transport protein Similar to many putative mebrane proteins Streptomyces coelicolor putative integral membrane efflux protein Sco6805 or Sc1a2.14 SWALL:Q9L227 (EMBL:AL138598) (434 aa) fasta scores: E(): 6.1e-33%2C 32.56 38d in 390 aa and to Mycobacterium smegmatis tetracycline-resistance determinant TetV SWALL:O31137 (EMBL:AF030344) (419 aa) fasta scores: E(): 1.1e-23%2C 27.27 38d in 396 aa gene gene2008 http://www.ncbi.nlm.nih.gov/gene/?term=YE2035 YE2036 YE2036 YE2036 2226606 2227778 + conserved hypothetical protein gene gene2009 http://www.ncbi.nlm.nih.gov/gene/?term=YE2036 YE2037 YE2037 YE2037 2227833 2229179 - putative exported protein gene gene2010 http://www.ncbi.nlm.nih.gov/gene/?term=YE2037 YE2038 YE2038 yghU yghU 2229341 2230192 + putative glutathione S-transferase gene gene2011 http://www.ncbi.nlm.nih.gov/gene/?term=YE2038 YE2039 YE2039 YE2039 2230375 2231484 - conserved hypothetical protein Similar to several proteins of undefined function which lie within arginine/ornithine transport operons%2Cincluding: Pseudomonas aeruginosa arginine/ornithine transport operon protein Aot or AotO or Pa0891 SWALL:O50184 (EMBL:AF012537) (370 aa) fasta scores: E(): 1.5e-51%2C 41.41 38d in 367 aa and Brucella melitensis arginine/ornithine transport operon protein Aot or Bmei1635 SWALL:Q8YF87 (EMBL:AE009599) (353 aa) fasta scores: E(): 1.1e-07%2C 32.1 38d in 352 aa gene gene2012 http://www.ncbi.nlm.nih.gov/gene/?term=YE2039 YE2040 YE2040 YE2040 2231499 2231954 + probable leucine-responsive regulatory protein Similar to many leucine-responsive regulatory proteins including: Escherichia coli%2C Escherichia coli O157:H7%2C and Enterobacter aerogenes Lrp or AlsB or LivR or Ihb or oppi or b0889 or z1234 or ecs0974 SWALL:LRP_ECOLI (SWALL:P19494) (163 aa) fasta scores: E(): 2.5e-13%2C 42.53 id in 134 aa and Rhizobium loti transcriptional regulator Mll7129 SWALL:Q987B0 (EMBL:AP003011) (163 aa) fasta scores: E(): 3.2e-15%2C 35.17 38d in 145 aa gene gene2013 http://www.ncbi.nlm.nih.gov/gene/?term=YE2040 YE2041 YE2041 YE2041 2231975 2232523 - amino acid transport system permease (pseugdogene) Similar to many amino acid transporters including: Escherichia coli%2C and Escherichia coli O157:H7 histidine transport system permease protein HisM or b2307 or z3569 or ecs3191 SWALL:HISM_ECOLI (SWALL:P20091) (238 aa) fasta scores: E(): 3.3e-29%2C 42.03 38d in 226 aa and to Pseudomonas aeruginosa arginine/ornithine transport protein AotM or Pa0890 SWALL:O50183 (EMBL:AF012537) (232 aa) fasta scores: E(): 2.5e-31%2C 44.91 38d in 236 aa. Note this CDS contains a premature stop codon following codon 57. pseudogene gene2014 http://www.ncbi.nlm.nih.gov/gene/?term=YE2041 YE2043 YE2043 YE2043 2232697 2233389 - amino acid transport system permease protein Similar to many amino acid transporters including: Escherichia coli histidine transport system permease protein HisQ or b2308 SWALL:HISQ_ECOLI (SWALL:P52094) (228 aa) fasta scores: E(): 4.5e-34%2C 42.92 38d in 226 aa and to Pseudomonas aeruginosa arginine/ornithine transport protein AotQ or pa0889 SWALL:Q9I557 (EMBL:AE004523) (229 aa) fasta scores: E(): 1.8e-37%2C 48.45 38d in 227 aa gene gene2015 http://www.ncbi.nlm.nih.gov/gene/?term=YE2043 YE2044 YE2044 YE2044 2233469 2234242 - amino acid-binding periplasmic protein precursor Similar to many amino acid transporters including: Salmonella typhimurium lysine-arginine-ornithine-binding periplasmic protein precursor ArgT or Stm2355 SWALL:ARGT_SALTY (SWALL:P02911) (260 aa) fasta scores: E(): 1.8e-41%2C 44.61 38d in 260 aa and to Escherichia coli lysine-arginine-ornithine-binding periplasmic protein precursor ArgT or b2310 SWALL:ARGT_ECOLI (SWALL:P09551) (260 aa) fasta scores: E(): 4.8e-41%2C 45 38d in 260 aa gene gene2016 http://www.ncbi.nlm.nih.gov/gene/?term=YE2044 YE2045 YE2045 YE2045 2234269 2235027 - putative hydrolase Similar to Streptomyces coelicolor ng%2Cng-dimethylarginine dimethylaminohydrolase DdaH or sco6718 or sc5f2a.01C SWALL:DDAH_STRCO (SWALL:Q9X7M4) (258 aa) fasta scores: E(): 1.3e-15%2C 31.76 38d in 255 aa and to Homo sapiens ng%2Cng-dimethylarginine dimethylaminohydrolase 1 DdaH1 SWALL:DDH1_HUMAN (SWALL:O94760) (284 aa) fasta scores: E(): 3.3e-15%2C 33.83 38d in 266 aa gene gene2017 http://www.ncbi.nlm.nih.gov/gene/?term=YE2045 YE2047 YE2047 YE2047 2235413 2236402 - putative hydrolase Weakly similar to many including: Agrobacterium tumefaciens amidohydrolase Atu5536 or agr_pat_799 SWALL:Q8UJE1 (EMBL:AE008973) (600 aa) fasta scores: E(): 6.8e-11%2C 26.92 38d in 312 aa and to Pyrococcus furiosus hypothetical protein Pf1017 SWALL:AAL81141 (EMBL:AE010213) (262 aa) fasta scores: E(): 9.4e-11%2C 26.15 38d in 302 aa gene gene2018 http://www.ncbi.nlm.nih.gov/gene/?term=YE2047 YE2048 YE2048 YE2048 2236516 2237382 + LysR-family transcriptional regulatory protein Similar to many LysR-family transcriptional regulatory proteins including: Alcaligenes eutrophus transcriptional regulatory protein TdfR/TfdS(tfds or tfdo) SWALL:TFDR_ALCEU (SWALL:P10086) (295 aa) fasta scores: E(): 5.7e-16%2C 29.78 38d in 282 aa and to Rhizobium meliloti putative transcriptional regulator protein Rb0012 or Smb20009 SWALL:Q92XF0 (EMBL:AL603642) (309 aa) fasta scores: E(): 7.6e-18%2C 31.06 38d in 264 aa gene gene2019 http://www.ncbi.nlm.nih.gov/gene/?term=YE2048 YE2049 YE2049 YE2049 2237459 2240038 - putative autotransporter protein Weakly similar to many autotransporter proteins including: Yersinia pestis YapD protein SWALL:Q9F289 (EMBL:AJ277627) (1457 aa) fasta scores: E(): 2.6e-42%2C35.07 38d in 844 aa and to Bordetella pertussis pertactin-family protein BapA protein SWALL:Q9F4B4 (EMBL:AJ277632) (903 aa) fasta scores: E(): 5.4e-28%2C27.35 38d in 848 aa gene gene2020 http://www.ncbi.nlm.nih.gov/gene/?term=YE2049 YE2050 YE2050 YE2050 2240179 2240892 - putative LuxR-family transcriptional regulatory protein Weakly similar in parts to Pseudomonas aeruginosa probable two-component response regulator Pa3948 SWALL:Q9HX68 (EMBL:AE004813) (209 aa) fasta scores: E(): 0.00023%2C 23.97 38d in 171 aa and Staphylococcus aureus regulatory protein Sa1666 protein or sa1666 SWALL:Q99T30 (EMBL:AP003363) (207 aa) fasta scores: E(): 0.00055%2C25.77 38d in 194 aa gene gene2021 http://www.ncbi.nlm.nih.gov/gene/?term=YE2050 YE2051 YE2051 YE2051 2241111 2242058 + putative LysR-family transcriptional regulatory protein Similar to many putative regulatory proteins including: Streptomyces coelicolor putative LysR-family transcriptional regulatory protein Sco7438 or Sc6d11.34 SWALL:Q9L122 (EMBL:AL158061) (311 aa) fasta scores: E(): 4.3e-14%2C 27.77 38d in 306 aa and Escherichia coli hypothetical transcriptional regulator YbdO or b0603 SWALL:YBDO_ECOLI (SWALL:P77746) (300 aa) fasta scores: E(): 3e-11%2C 25.34 38d in 292 aa gene gene2022 http://www.ncbi.nlm.nih.gov/gene/?term=YE2051 YE2052 YE2052 amn amn 2242061 2243521 - putative AMP nucleosidase gene gene2023 http://www.ncbi.nlm.nih.gov/gene/?term=YE2052 YE2053 YE2053 YE2053 2243670 2244665 + putative transcriptional regulatory protein Similar to many regulatory proteins%2C including: Bacillus halodurans ribose operon repressor RbsR or Bh3727 SWALL:RBSR_BACHD (SWALL:Q9K6K2) (331 aa) fasta scores: E(): 2.9e-20%2C 30.67 38d in 326 aa and to Rhizobium meliloti putative transcriptional regulator protein Rb0154 or Smb20154 SWALL:Q92X08 (EMBL:AL603642) (328 aa) fasta scores: E(): 5.8e-34%2C 38.18 38d in 330 aa gene gene2024 http://www.ncbi.nlm.nih.gov/gene/?term=YE2053 YE2054 YE2054 YE2054 2244805 2245617 + putative inositol-1-monophosphatase Similar to many including: Synechocystis sp. inositol-1-monophosphatase SuhB or Sll1383 SWALL:SUHB_SYNY3 (SWALL:P74158) (287 aa) fasta scores: E(): 9.5e-26%2C 36.5 38d in 263 aa%2C Brucella melitensis myo-inositol-1 BmeII0568 SWALL:Q8YCG2 (EMBL:AE009693) (266 aa) fasta scores: E(): 2.1e-45%2C 47.89 38d in 261 aa and to Rhizobium meliloti inositol-1-monophosphatase SuhB or R02778 or smc03994 SWALL:SUHB_RHIME (SWALL:Q92M71) (266 aa) fasta scores: E(): 6e-25%2C 37.98 38d in 258 aa gene gene2025 http://www.ncbi.nlm.nih.gov/gene/?term=YE2054 YE2055 YE2055 YE2055 2245759 2247165 + putative inner-membrane regulatory protein Similar to many putative regulatory proteins including: Escherichia coli regulatory protein UhpC or b3667 SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 7.1e-32%2C 27.88 38d in 416 aa%2C Vibrio cholerae regulatory protein UhpC%2C putative Vca0707 SWALL:Q9KLN6 (EMBL:AE004400) (459 aa) fasta scores: E(): 5.2e-59%2C38.53 38d in 436 aa and to Salmonella typhi regulatory protein Sty3994 SWALL:Q8Z2K5 (EMBL:AL627280) (442 aa) fasta scores: E(): 8.5e-35%2C 29.58 38d in 453 aa gene gene2026 http://www.ncbi.nlm.nih.gov/gene/?term=YE2055 YE2057 YE2057 YE2057 2247673 2248977 + putative virulence factor gene gene2027 http://www.ncbi.nlm.nih.gov/gene/?term=YE2057 YE2058 YE2058 YE2058 2248982 2252017 + putative virulence factor gene gene2028 http://www.ncbi.nlm.nih.gov/gene/?term=YE2058 YE2059 YE2059 YE2059 2252014 2254440 + putative virulence factor gene gene2029 http://www.ncbi.nlm.nih.gov/gene/?term=YE2059 YE2060 YE2060 ilvB ilvB 2254911 2256593 + putative acetolactate synthase large subunit gene gene2030 http://www.ncbi.nlm.nih.gov/gene/?term=YE2060 YE2061 YE2061 ilvN ilvN 2256634 2256900 + putative acetolactate synthase small subunit gene gene2031 http://www.ncbi.nlm.nih.gov/gene/?term=YE2061 YE2062 YE2062 YE2062 2257016 2257690 - haloacid dehalogenase-like hydrolase family protein gene gene2032 http://www.ncbi.nlm.nih.gov/gene/?term=YE2062 YE2063 YE2063 YE2063 2257783 2260158 - conserved exported protein Similar over the entire range to Yersinia pestis KIM hypothetical Y2129 SWALL:AAM85691 (EMBL:AE013816) (798 aa) fasta scores: E(): 0%2C 72.3 38d in 798 aa. The N-terminus of the predicted product of this CDS is similar to Yersinia pestis putative membrane protein Ypo2297 SWALL:Q8ZE85 (EMBL:AJ414151) (336 aa) fasta scores: E(): 3.8e-90%2C 73 38d in 326 aa and in the C-terminus to Yersinia pestis hypothetical protein Ypo2296 SWALL:Q8ZE86 (EMBL:AJ414151) (461 aa) fasta scores: E(): 8.5e-131%2C71.89 38d in 459 aa. This is likely to indicate that Ypo2297 and Ypo2296 are parts of the same pseudogene in Y. pestis CO92. gene gene2033 http://www.ncbi.nlm.nih.gov/gene/?term=YE2063 YE2064 YE2064 YE2064 2260560 2261339 + hypothetical protein Weakly similar to Streptomyces griseus A-factor receptor protein ArpA SWALL:Q54223 (EMBL:X79605) (250 aa) fasta scores: E(): 0.0004%2C 22.91 38d in 240 aa gene gene2034 http://www.ncbi.nlm.nih.gov/gene/?term=YE2064 YE2065 YE2065 YE2065 2261532 2262545 - conserved hypothetical protein Similar to several proteins of unknown function including: Salmonella typhimurium putative cytoplasmic protein Stm3791 SWALL:Q8ZL16 (EMBL:AE008876) (337 aa) fasta scores: E(): 1.4e-94%2C 65.28 38d in 337 aa and to Salmonella typhi hypothetical protein Sty3991 SWALL:Q8Z2K8 (EMBL:AL627280) (337 aa) fasta scores: E(): 3.7e-93%2C64.68 38d in 337 aa gene gene2035 http://www.ncbi.nlm.nih.gov/gene/?term=YE2065 YE2066 YE2066 fucP fucP 2262567 2263898 - L-fucose permease Similar to Escherichia coli L-fucose permease FucP or b2801 SWALL:FUCP_ECOLI (SWALL:P11551) (438 aa) fasta scores: E(): 3.1e-51%2C 35.66 38d in 429 aa and to Salmonella typhimurium%2C and Salmonella typhi putative L-fucose permease Stm3792 or Sty3990 SWALL:Q8XEV7 (EMBL:AE008876) (438 aa) fasta scores: E(): 2.4e-128%2C76.6 38d in 436 aa gene gene2036 http://www.ncbi.nlm.nih.gov/gene/?term=YE2066 YE2067 YE2067 YE2067 2263900 2264829 - putative carbohydrate kinase Similar to Escherichia coli%2C and Escherichia coli O157:H7 ribokinase RbsK or b3752 or z5253 or ecs4694 SWALL:RBSK_ECOLI (SWALL:P05054) (309 aa) fasta scores: E(): 9.7e-32%2C 38.94 38d in 303 aa and to Salmonella typhimurium%2C and Salmonella typhi putative sugar kinase%2Cribokinase family Stm3793 or sty3989 SWALL:Q8XGW5 (EMBL:AE008876) (306 aa) fasta scores: E(): 5.7e-77%2C65.56 38d in 302 aa gene gene2037 http://www.ncbi.nlm.nih.gov/gene/?term=YE2067 YE2068 YE2068 phoA phoA 2265109 2266518 - alkaline phosphatase precursor gene gene2038 http://www.ncbi.nlm.nih.gov/gene/?term=YE2068 YE2069 YE2069 YE2069 2266718 2267458 - putative short chain dehydrogenease Similar to many short chain dehydrogeneases including: Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 9.1e-26%2C 38.68 38d in 243 aa and Rhizobium meliloti putative short chain dehydrogenasereductase protein Rb0475 or Smb20493 SWALL:Q92W70 (EMBL:AL603643) (244 aa) fasta scores: E(): 3.3e-57%2C 69.58 38d in 240 aa gene gene2039 http://www.ncbi.nlm.nih.gov/gene/?term=YE2069 YE2070 YE2070 gyrI gyrI 2267674 2268147 - DNA gyrase inhibitory protein Similar to Escherichia coli DNA gyrase inhibitory protein GyrI or SbmC or b2009 SWALL:GYRI_ECOLI (SWALL:P33012) (157 aa) fasta scores: E(): 1.1e-18%2C 37.66 id in 154 aa and to Salmonella typhimurium%2C and Salmonella typhi DNA gyrase inhibitory protein homolog GyrI or SbmC or stm2272 or sty2266 SWALL:GYRI_SALTY (SWALL:P41781) (155 aa) fasta scores: E(): 4.2e-18%2C 34.83 38d in 155 aa gene gene2040 http://www.ncbi.nlm.nih.gov/gene/?term=YE2070 YE2071 YE2071 YE2071 2268244 2268762 - conserved hypothetical protein Similar to many proteins of undefined function including: Rhizobium meliloti hypothetical protein R00856 or Smc00850 SWALL:Q92RL1 (EMBL:AL591785) (172 aa) fasta scores: E(): 7e-31%2C 55.26 38d in 152 aa and to Ralstonia solanacearum hypothetical protein Rsc1374 or Rs04657 SWALL:Q8XZM1 (EMBL:AL646064) (173 aa) fasta scores: E(): 6.6e-30%2C 54.77 38d in 157 aa gene gene2041 http://www.ncbi.nlm.nih.gov/gene/?term=YE2071 YE2073 YE2073 YE2073 2269076 2269891 - conserved hypothetical protein Similar to many proteins of undefined function including: Rhizobium meliloti hypothetical protein R02581 or Smc02354 SWALL:Q92MN2 (EMBL:AL591791) (271 aa) fasta scores: E(): 9.9e-33%2C 39.91 38d in 243 aa and to Agrobacterium tumefaciens hypothetical protein atu2144 or agr_c_3887 SWALL:Q8UDI1 (EMBL:AE009164) (257 aa) fasta scores: E(): 2.9e-25%2C 36.99 38d in 246 aa gene gene2042 http://www.ncbi.nlm.nih.gov/gene/?term=YE2073 YE2074 YE2074 ogt ogt 2270141 2270659 + putative methylated-DNA--protein-cysteine methyltransferase gene gene2043 http://www.ncbi.nlm.nih.gov/gene/?term=YE2074 YE2075 YE2075 fnr fnr 2270732 2271487 + fumarate and nitrate reduction regulatory protein gene gene2044 http://www.ncbi.nlm.nih.gov/gene/?term=YE2075 YE2076 YE2076 YE2076 2271724 2272680 + putative stress protein gene gene2045 http://www.ncbi.nlm.nih.gov/gene/?term=YE2076 YE2077 YE2077 pntB pntB 2272919 2274310 - NAD(P) transhydrogenase subunit beta gene gene2046 http://www.ncbi.nlm.nih.gov/gene/?term=YE2077 YE2078 YE2078 pntA pntA 2274431 2275957 - NAD(P) transhydrogenase alpha subunit gene gene2047 http://www.ncbi.nlm.nih.gov/gene/?term=YE2078 YE2079 YE2079 YE2079 2276049 2276228 - conserved hypothetical protein Note the differing N-termini compared to other Yersinia orthologues gene gene2048 http://www.ncbi.nlm.nih.gov/gene/?term=YE2079 YE2080 YE2080 YE2080 2276490 2277443 + putative exported protein gene gene2049 http://www.ncbi.nlm.nih.gov/gene/?term=YE2080 YE2081 YE2081 YE2081 2277894 2279285 + putative amino acid antiporter gene gene2050 http://www.ncbi.nlm.nih.gov/gene/?term=YE2081 YE2082 YE2082 YE2082 2279356 2279772 - conserved hypothetical protein gene gene2051 http://www.ncbi.nlm.nih.gov/gene/?term=YE2082 YE2083 YE2083 rstA rstA 2280015 2280743 + two-component regulatory system%2C response regulator protein gene gene2052 http://www.ncbi.nlm.nih.gov/gene/?term=YE2083 YE2084 YE2084 rstB rstB 2280770 2282047 + two-component regulatory system%2C sensor kinase protein gene gene2053 http://www.ncbi.nlm.nih.gov/gene/?term=YE2084 YE2085 YE2085 YE2085 2282083 2283576 + putative carboxypeptidase gene gene2054 http://www.ncbi.nlm.nih.gov/gene/?term=YE2085 YE2086 YE2086 asr asr 2283966 2284241 + putative acid shock protein gene gene2055 http://www.ncbi.nlm.nih.gov/gene/?term=YE2086 YE2087 YE2087 YE2087 2284642 2285484 + possible protease Similar to many including: Yersinia pestis putative peptidase Ypo2319 SWALL:Q8ZE64 (EMBL:AJ414152) (278 aa) fasta scores: E(): 5.9e-88%2C 78.72 38d in 282 aa and to Salmonella typhimurium%2C and Salmonella typhi putative protease Stm1484 or Sty1583 SWALL:Q8XG80 (EMBL:AE008764) (273 aa) fasta scores: E(): 3.4e-62%2C 58.58 38d in 268 aa gene gene2056 http://www.ncbi.nlm.nih.gov/gene/?term=YE2087 YE2088 YE2088 YE2088 2285540 2285863 - putative DNA-binding phage-related protein gene gene2057 http://www.ncbi.nlm.nih.gov/gene/?term=YE2088 YE2089 YE2089 YE2089 2285860 2286174 - putative phage protein gene gene2058 http://www.ncbi.nlm.nih.gov/gene/?term=YE2089 YE2090 YE2090 hrpA hrpA 2286528 2290370 - ATP-dependent helicase gene gene2059 http://www.ncbi.nlm.nih.gov/gene/?term=YE2090 YE2091 YE2091 YE2091 2290584 2291825 - hypothetical protein Similar in parts to Escherichia coli cytotoxic necrotizing factor type 2 Cnf2 SWALL:Q47107 (EMBL:U01097) (1014 aa) fasta scores: E(): 5.8e-10%2C 24.55 38d in 281 aa and to Yersinia pseudotuberculosis cytotoxic necrotizing factor Cnf SWALL:Q9EYH7 (EMBL:AF324349) (1014 aa) fasta scores: E(): 3.5e-08%2C 24.9 38d in 273 aa gene gene2060 http://www.ncbi.nlm.nih.gov/gene/?term=YE2091 YE2092 YE2092 acpD acpD 2292282 2292887 + acyl carrier protein phosphodiesterase gene gene2061 http://www.ncbi.nlm.nih.gov/gene/?term=YE2092 YE2094 YE2094 YE2094 2293157 2293387 - putative transcriptional regulatory protein (fragment) This CDS appears to be a gene fragment which is highly similar to the very C-terminus of Yersinia pestis putative transcriptional regulatory protein Ypo2324 SWALL:Q8ZE59 (EMBL:AJ414152) (318 aa) fasta scores: E(): 1.1e-19%2C 78.48 38d in 79 aa and to Yersinia pestis KIM putative transcriptional regulator Y2009 SWALL:AAM85575 (EMBL:AE013803) (318 aa) fasta scores: E(): 1.1e-19%2C78.48 38d in 79 aa pseudogene gene2062 http://www.ncbi.nlm.nih.gov/gene/?term=YE2094 YE2095 YE2095 YE2095 2293453 2293824 - putative exported protein gene gene2063 http://www.ncbi.nlm.nih.gov/gene/?term=YE2095 YE2096 YE2096 YE2096 2293834 2294019 - putative lipoprotein gene gene2064 http://www.ncbi.nlm.nih.gov/gene/?term=YE2096 YE2097 YE2097 YE2097 2294025 2296658 - conserved hypothetical protein Similar to many proteins of undefined function including: Escherichia coli hypothetical protein YdbH or b1381 SWALL:YDBH_ECOLI (SWALL:P52645) (879 aa) fasta scores: E(): 4.9e-167%2C 46.46 38d in 876 aa and to Yersinia pestis putative membrane protein Ypo2328 SWALL:Q8ZE56 (EMBL:AJ414152) (898 aa) fasta scores: E(): 0%2C 80.11 38d in 875 aa gene gene2065 http://www.ncbi.nlm.nih.gov/gene/?term=YE2097 YE2098 YE2098 ldhA ldhA 2296932 2297924 + D-lactate dehydrogenase gene gene2066 http://www.ncbi.nlm.nih.gov/gene/?term=YE2098 YE2099 YE2099 YE2099 2298056 2298373 - putative lipoprotein Similar to Yersinia pestis putative lipoprotein Ypo2331 SWALL:Q8ZE53 (EMBL:AJ414152) (113 aa) fasta scores: E(): 2.7e-21%2C 58.4 38d in 113 aa and to Escherichia coli hypothetical protein YdbJ precursor ydbj or b1378.1 SWALL:YDBJ_ECOLI (SWALL:P52646) (88 aa) fasta scores: E(): 1.6e-09%2C 40.95 38d in 105 aa gene gene2067 http://www.ncbi.nlm.nih.gov/gene/?term=YE2099 YE2100 YE2100 YE2100 2298612 2299271 + putative membrane protein gene gene2068 http://www.ncbi.nlm.nih.gov/gene/?term=YE2100 YE2101 YE2101 qacE qacE 2299380 2299712 - quaternary ammonium compound-resistance protein gene gene2069 http://www.ncbi.nlm.nih.gov/gene/?term=YE2101 YE2102 YE2102 nifJ nifJ 2300090 2303623 + putative pyruvate-flavodoxin oxidoreductase gene gene2070 http://www.ncbi.nlm.nih.gov/gene/?term=YE2102 YE2103 YE2103 arbB arbB 2303703 2305058 - beta-glucosidase Similar to Bacillus subtilis beta-glucosidase BglH or n17D SWALL:BGL1_BACSU (SWALL:P40740) (469 aa) fasta scores: E(): 3.5e-110%2C 63.01 38d in 411 aa and to Leishmania infantum 6-phospho-beta-glucosidase-like protein ArbB SWALL:Q9GPU3 (EMBL:AF309637) (467 aa) fasta scores: E(): 5.2e-98%2C 57.77 38d in 431 aa. Note the differing N-termini of the Bacillus and Yersinia predicted products. gene gene2071 http://www.ncbi.nlm.nih.gov/gene/?term=YE2103 YE2104 YE2104 arbF arbF 2305196 2307097 - PTS system beta-glucoside-specific IIabc component Similar to Erwinia chrysanthemi PTS system%2Cbeta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.4e-81%2C 37.44 38d in 633 aa and to Escherichia coli pts system%2C beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 1.4e-79%2C 39.3 38d in 636 aa gene gene2072 http://www.ncbi.nlm.nih.gov/gene/?term=YE2104 YE2105 YE2105 arbG arbG 2307182 2308015 - beta-glucoside operon antiterminator Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 1.9e-47%2C 49.27 38d in 274 aa and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 6.7e-49%2C 49.08 38d in 273 aa gene gene2073 http://www.ncbi.nlm.nih.gov/gene/?term=YE2105 YE2106 YE2106 YE2106 2308324 2309265 + conserved hypothetical protein gene gene2074 http://www.ncbi.nlm.nih.gov/gene/?term=YE2106 YE2107 YE2107 YE2107 2309579 2310562 - CorA-like Mg2+ transporter protein gene gene2075 http://www.ncbi.nlm.nih.gov/gene/?term=YE2107 YE2110 YE2110 mppA mppA 2311500 2313116 - putative periplasmic murein peptide-binding protein gene gene2076 http://www.ncbi.nlm.nih.gov/gene/?term=YE2110 YE2111 YE2111 YE2111 2313263 2313970 + conserved hypothetical protein gene gene2077 http://www.ncbi.nlm.nih.gov/gene/?term=YE2111 YE2112 YE2112 YE2112 2313967 2314938 - putative mandelate racemase / muconate lactonizing protein gene gene2078 http://www.ncbi.nlm.nih.gov/gene/?term=YE2112 YE2113 YE2113 tpx tpx 2315091 2315594 + thiol peroxidase gene gene2079 http://www.ncbi.nlm.nih.gov/gene/?term=YE2113 YE2114 YE2114 tyrR tyrR 2315717 2317294 - transcriptional regulatory protein gene gene2080 http://www.ncbi.nlm.nih.gov/gene/?term=YE2114 YE2115 YE2115 YE2115 2317614 2318060 + conserved hypothetical protein gene gene2081 http://www.ncbi.nlm.nih.gov/gene/?term=YE2115 YE2116 YE2116 YE2116 2318124 2318582 + conserved hypothetical protein gene gene2082 http://www.ncbi.nlm.nih.gov/gene/?term=YE2116 YE2117 YE2117 YE2117 2318585 2319649 - putative membrane protein gene gene2083 http://www.ncbi.nlm.nih.gov/gene/?term=YE2117 YE2118 YE2118 YE2118 2319646 2321043 - conserved hypothetical protein gene gene2084 http://www.ncbi.nlm.nih.gov/gene/?term=YE2118 YE2118A YE2118A YE2118A 2321024 2321263 - phage shock protein D gene gene2085 http://www.ncbi.nlm.nih.gov/gene/?term=YE2118A YE2119 YE2119 pspC pspC 2321309 2321659 - phage shock protein C gene gene2086 http://www.ncbi.nlm.nih.gov/gene/?term=YE2119 YE2120 YE2120 pspB pspB 2321728 2321955 - phage shock protein B gene gene2087 http://www.ncbi.nlm.nih.gov/gene/?term=YE2120 YE2121 YE2121 pspA pspA 2322117 2322782 - phage shock protein A gene gene2088 http://www.ncbi.nlm.nih.gov/gene/?term=YE2121 YE2122 YE2122 pspF pspF 2322972 2323991 + psp operon transcriptional activator gene gene2089 http://www.ncbi.nlm.nih.gov/gene/?term=YE2122 YE2123 YE2123 ytxB ytxB 2324044 2324400 - putative lipoprotein Previously sequenced as: Yersinia enterocolitica YtxB precursor SWALL:Q93M75 (EMBL:AY008264) (118 aa) fasta scores: E(): 1e-47%2C 100 38d in 118 aa. This CDS is possibly an enterotoxin subunit. gene gene2090 http://www.ncbi.nlm.nih.gov/gene/?term=YE2123 YE2124 YE2124 ytxA ytxA 2324449 2325276 - putative enterotoxin subunit Previously sequenced as: Yersinia enterocolitica YtxA precursor SWALL:Q93M76 (EMBL:AY008264) (275 aa) fasta scores: E(): 8.6e-116%2C 100 38d in 275 aa. Also weakly similar to Bordetella pertussis pertussis toxin subunit 1 precursor PtxA SWALL:TOX1_BORPE (SWALL:P04977) (269 aa) fasta scores: E(): 6.5e-14%2C 33.48 38d in 221 aa gene gene2091 http://www.ncbi.nlm.nih.gov/gene/?term=YE2124 YE2125 YE2125 sapA sapA 2326034 2327707 + peptide transport periplasmic protein precursor gene gene2092 http://www.ncbi.nlm.nih.gov/gene/?term=YE2125 YE2126 YE2126 sapB sapB 2327704 2328669 + peptide transport system permease protein gene gene2093 http://www.ncbi.nlm.nih.gov/gene/?term=YE2126 YE2127 YE2127 sapC sapC 2328656 2329546 + peptide transport system permease protein gene gene2094 http://www.ncbi.nlm.nih.gov/gene/?term=YE2127 YE2128 YE2128 sapD sapD 2329546 2330538 + peptide transport system ATP-binding protein gene gene2095 http://www.ncbi.nlm.nih.gov/gene/?term=YE2128 YE2129 YE2129 sapF sapF 2330538 2331353 + peptide transport system ATP-binding protein gene gene2096 http://www.ncbi.nlm.nih.gov/gene/?term=YE2129 YE2130 YE2130 YE2130 2331499 2331741 + hypothetical protein doubtful CDS with no significant database hits gene gene2097 http://www.ncbi.nlm.nih.gov/gene/?term=YE2130 YE2131 YE2131 YE2131 2331753 2332964 + conserved hypothetical protein gene gene2098 http://www.ncbi.nlm.nih.gov/gene/?term=YE2131 YE2132 YE2132 YE2132 2333007 2333891 - LysR-family transcriptional regulatory protein Similar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SWALL:OXYR_ERWCA (SWALL:P71318) (302 aa) fasta scores: E(): 7.9e-13%2C 28.13 id in 295 aa and to Pseudomonas aeruginosa probable transcriptional regulator Pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.4e-37%2C39.59 38d in 293 aa gene gene2099 http://www.ncbi.nlm.nih.gov/gene/?term=YE2132 YE2133 YE2133 YE2133 2334496 2335962 + putative proton dependent peptide transporter gene gene2100 http://www.ncbi.nlm.nih.gov/gene/?term=YE2133 YE2134 YE2134 YE2134 2336211 2336564 - conserved hypothetical protein Similar to many proteins of unproven function inculding: Rhizobium meliloti hypothetical protein R01936 or Smc04266 SWALL:Q92P57 (EMBL:AL591789) (117 aa) fasta scores: E(): 3.3e-31%2C 69.82 38d in 116 aa%2C Agrobacterium tumefaciens glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein Atu1532 or agr_c_2825 SWALL:Q8UF67 (EMBL:AE009112) (119 aa) fasta scores: E(): 1.5e-29%2C 67.25 38d in 113 aa and to Xanthomonas campestris hypothetical protein Xcc0234 SWALL:Q8PDV1 (EMBL:AE012119) (113 aa) fasta scores: E(): 3.8e-25%2C 61.46 38d in 109 aa gene gene2101 http://www.ncbi.nlm.nih.gov/gene/?term=YE2134 YE2135 YE2135 YE2135 2336785 2337375 + putative membrane protein gene gene2102 http://www.ncbi.nlm.nih.gov/gene/?term=YE2135 YE2136 YE2136 YE2136 2337561 2337824 + conserved hypothetical protein gene gene2103 http://www.ncbi.nlm.nih.gov/gene/?term=YE2136 YE2137 YE2137 gst gst 2338006 2338614 + glutathione S-transferase gene gene2104 http://www.ncbi.nlm.nih.gov/gene/?term=YE2137 YE2138 YE2138 pdxY pdxY 2338666 2339526 - pyridoxamine kinase gene gene2105 http://www.ncbi.nlm.nih.gov/gene/?term=YE2138 YE2139 YE2139 tyrS tyrS 2339601 2340875 - tyrosyl-tRNA synthetase gene gene2106 http://www.ncbi.nlm.nih.gov/gene/?term=YE2139 YE2140 YE2140 pdxH pdxH 2341125 2341778 - pyridoxamine 5'-phosphate oxidase gene gene2107 http://www.ncbi.nlm.nih.gov/gene/?term=YE2140 YE2141 YE2141 YE2141 2342034 2342387 - putative lipoprotein Previously sequenced as: Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 1.2e-37%2C 100 38d in 101 aa. Also highly similar to Yersinia pestis putative lipoprotein Ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.3e-24%2C 67.89 38d in 109 aa gene gene2108 http://www.ncbi.nlm.nih.gov/gene/?term=YE2141 YE2142 YE2142 YE2142 2342443 2343555 - conserved hypothetical protein gene gene2109 http://www.ncbi.nlm.nih.gov/gene/?term=YE2142 YE2143 YE2143 pcpY pcpY 2344000 2344467 + outer membrane lipoprotein gene gene2110 http://www.ncbi.nlm.nih.gov/gene/?term=YE2143 YE2144 YE2144 rovA rovA 2344589 2345020 - MarR-family transcriptional regulatory protein gene gene2111 http://www.ncbi.nlm.nih.gov/gene/?term=YE2144 YE2145 YE2145 YE2145 2345201 2345437 + putative inner membrane protein Similar to several including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdhI or b1643 or z2658 or ecs2352 SWALL:YDHI_ECOLI (SWALL:P76184) (78 aa) fasta scores: E(): 6e-18%2C 61.11 38d in 72 aa and to Salmonella typhimurium putative inner membrane protein YdhI or Stm1443 SWALL:Q8ZPN2 (EMBL:AE008762) (78 aa) fasta scores: E(): 7e-16%2C 58.33 38d in 72 aa gene gene2112 http://www.ncbi.nlm.nih.gov/gene/?term=YE2145 YE2146 YE2146 YE2146 2345444 2346301 + putative hlyD-family protein Similar to several including: Salmonella typhi putative HlyD-family protein Sty1680 SWALL:Q8Z6P8 (EMBL:AL627271) (289 aa) fasta scores: E(): 3e-68%2C 60.07 id in 283 aa%2C Escherichia coli hypothetical protein YdhJ or b1644 SWALL:YDHJ_ECOLI (SWALL:P76185) (285 aa) fasta scores: E(): 1.2e-69%2C 62.19 38d in 283 aa and to Brucella melitensis fusaric acid resistance protein FusE SWALL:Q8YCJ5 (EMBL:AE009689) (285 aa) fasta scores: E(): 8.6e-41%2C 41.48 38d in 282 aa gene gene2113 http://www.ncbi.nlm.nih.gov/gene/?term=YE2146 YE2147 YE2147 YE2147 2346304 2348328 + putative exported protein Similar to many proteins of undefined function including: Salmonella typhi hypothetical protein YdhK or Sty1681 SWALL:YDHK_SALTI (SWALL:Q8Z6P7) (679 aa) fasta scores: E(): 3.1e-173%2C 60.78 38d in 663 aa and to Escherichia coli hypothetical protein YdhK or b1645 SWALL:YDHK_ECOLI (SWALL:P76186) (670 aa) fasta scores: E(): 2.4e-172%2C 61.27 38d in 661 aa gene gene2114 http://www.ncbi.nlm.nih.gov/gene/?term=YE2147 YE2148 YE2148 YE2148 2348353 2349249 - putative aldo/keto reductase gene gene2115 http://www.ncbi.nlm.nih.gov/gene/?term=YE2148 YE2149 YE2149 YE2149 2349386 2349625 - conserved hypothetical protein Similar to the very C-terminus of Yersinia pestis hypothetical protein Ypo2376 SWALL:Q8ZE14 (EMBL:AJ414152) (121 aa) fasta scores: E(): 3.9e-29%2C 88.6 38d in 79 aa. Similar over the whole range to Salmonella typhi hypothetical protein Sty1684 SWALL:Q8Z6P4 (EMBL:AL627271) (79 aa) fasta scores: E(): 4e-23%2C 73.41 38d in 79 aa gene gene2116 http://www.ncbi.nlm.nih.gov/gene/?term=YE2149 YE2150 YE2150 YE2150 2349917 2351548 + putative membrane protein gene gene2117 http://www.ncbi.nlm.nih.gov/gene/?term=YE2150 YE2151 YE2151 YE2151 2351671 2352273 + TetR-family transcriptional regulatory protein gene gene2118 http://www.ncbi.nlm.nih.gov/gene/?term=YE2151 YE2152 YE2152 YE2152 2352350 2353447 + NADH:flavin oxidoreductase / NADH oxidase family protein gene gene2119 http://www.ncbi.nlm.nih.gov/gene/?term=YE2152 YE2153 YE2153 gloA gloA 2353629 2354036 + lactoylglutathione lyase gene gene2120 http://www.ncbi.nlm.nih.gov/gene/?term=YE2153 YE2154 YE2154 rnt rnt 2354147 2354794 + ribonuclease T gene gene2121 http://www.ncbi.nlm.nih.gov/gene/?term=YE2154 YE2155 YE2155 YE2155 2355069 2355413 - conserved hypothetical protein gene gene2122 http://www.ncbi.nlm.nih.gov/gene/?term=YE2155 YE2156 YE2156 YE2156 2355847 2356737 + putative exported protein gene gene2123 http://www.ncbi.nlm.nih.gov/gene/?term=YE2156 YE2157 YE2157 sodB sodB 2356988 2357566 + superoxide dismutase [Fe] gene gene2124 http://www.ncbi.nlm.nih.gov/gene/?term=YE2157 YE2158 YE2158 purR purR 2358092 2359117 + purine nucleotide synthesis repressor gene gene2125 http://www.ncbi.nlm.nih.gov/gene/?term=YE2158 YE2159 YE2159 YE2159 2359173 2360111 - LysR-family transcriptional regulatory protein gene gene2126 http://www.ncbi.nlm.nih.gov/gene/?term=YE2159 YE2160 YE2160 YE2160 2360403 2361620 + putative drug resistance protein gene gene2127 http://www.ncbi.nlm.nih.gov/gene/?term=YE2160 YE2161 YE2161 cfa cfa 2361928 2363079 + cyclopropane-fatty-acyl-phospholipid synthase gene gene2128 http://www.ncbi.nlm.nih.gov/gene/?term=YE2161 YE2162 YE2162 ribE ribE 2363153 2363803 - riboflavin synthase alpha chain gene gene2129 http://www.ncbi.nlm.nih.gov/gene/?term=YE2162 YE2163 YE2163 YE2163 2364118 2365491 + putative transport protein gene gene2130 http://www.ncbi.nlm.nih.gov/gene/?term=YE2163 YE2164 YE2164 pykF pykF 2366685 2368097 + pyruvate kinase I gene gene2134 http://www.ncbi.nlm.nih.gov/gene/?term=YE2164 YE2165 YE2165 lpp lpp 2368417 2368653 + major outer membrane lipoprotein gene gene2135 http://www.ncbi.nlm.nih.gov/gene/?term=YE2165 YE2166 YE2166 YE2166 2368885 2369952 - putative exported protein gene gene2136 http://www.ncbi.nlm.nih.gov/gene/?term=YE2166 YE2167 YE2167 YE2167 2370219 2370641 - conserved hypothetical protein gene gene2137 http://www.ncbi.nlm.nih.gov/gene/?term=YE2167 YE2168 YE2168 YE2168 2370803 2371954 - putative selenocysteine lyase gene gene2138 http://www.ncbi.nlm.nih.gov/gene/?term=YE2168 YE2169 YE2169 YE2169 2372050 2373216 - conserved hypothetical protein gene gene2139 http://www.ncbi.nlm.nih.gov/gene/?term=YE2169 YE2170 YE2170 YE2170 2373356 2374102 - putative ATP-dependent transporter gene gene2140 http://www.ncbi.nlm.nih.gov/gene/?term=YE2170 YE2171 YE2171 YE2171 2374159 2375670 - conserved hypothetical protein gene gene2141 http://www.ncbi.nlm.nih.gov/gene/?term=YE2171 YE2172 YE2172 YE2172 2375685 2376056 - conserved hypothetical protein gene gene2142 http://www.ncbi.nlm.nih.gov/gene/?term=YE2172 YE2173 YE2173 YE2173 2376748 2377170 - conserved hypothetical protein gene gene2143 http://www.ncbi.nlm.nih.gov/gene/?term=YE2173 YE2174 YE2174 YE2174 2377345 2380401 - conserved hypothetical protein gene gene2144 http://www.ncbi.nlm.nih.gov/gene/?term=YE2174 YE2175 YE2175 YE2175 2380848 2381951 + putative membrane protein gene gene2145 http://www.ncbi.nlm.nih.gov/gene/?term=YE2175 YE2176 YE2176 ppsA ppsA 2382512 2384893 - phosphoenolpyruvate synthase gene gene2146 http://www.ncbi.nlm.nih.gov/gene/?term=YE2176 YE2177 YE2177 YE2177 2385180 2386001 + Conserved hypothetical protein gene gene2147 http://www.ncbi.nlm.nih.gov/gene/?term=YE2177 YE2178 YE2178 aroH aroH 2386228 2387277 + phospho-2-dehydro-3-deoxyheptonate aldolase gene gene2148 http://www.ncbi.nlm.nih.gov/gene/?term=YE2178 YE2179 YE2179 YE2179 2387460 2387606 + hypothetical protein doubtful CDS with no significant database hits gene gene2149 http://www.ncbi.nlm.nih.gov/gene/?term=YE2179 YE2180 YE2180 hemR2 hemR2 2387828 2389858 + hemin storage receptor protein Similar to Yersinia pestis hemin storage receptor precursor HmuR or Ypo0283 or Y0543 SWALL:HMUR_YERPE (SWALL:Q56989) (676 aa) fasta scores: E(): 1.2e-126%2C53.74 38d in 681 aa. Also similar to Yersinia enterocolitica hemin receptor precursor HemR or YE0331 SWALL:HEMR_YEREN (SWALL:P31499) (687 aa) fasta scores: E(): 7.5e-123%2C 53.21 38d in 699 aa gene gene2150 http://www.ncbi.nlm.nih.gov/gene/?term=YE2180 YE2181 YE2181 hemS2 hemS2 2389973 2391034 + hemin transport protein Similar to Yersinia enterocolitica hemin transport protein HemS or YE0330 SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 3.2e-69%2C 51.59 38d in 345 aa and to Yersinia pestis hemin transport protein HemS or ypo0282 or y0542 SWALL:HMUS_YERPE (SWALL:Q56990) (345 aa) fasta scores: E(): 1.5e-73%2C 53.33 38d in 345 aa gene gene2151 http://www.ncbi.nlm.nih.gov/gene/?term=YE2181 YE2182 YE2182 hmuT2 hmuT2 2391027 2391860 + hemin-binding periplasmic protein Similar to Yersinia pestis hemin-binding periplasmic protein hmuT precursor or Ypo0281 or Y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 1.3e-57%2C 60.37 38d in 270 aa%2C and to Yersinia enterocolitica hemin binding protein HemT SWALL:P74979 (EMBL:X77867) (279 aa) fasta scores: E(): 5.8e-59%2C 61.11 id in 270 aa gene gene2152 http://www.ncbi.nlm.nih.gov/gene/?term=YE2182 YE2183 YE2183 YE2183 2391920 2393419 - conserved hypothetical protein gene gene2153 http://www.ncbi.nlm.nih.gov/gene/?term=YE2183 YE2184 YE2184 lplA lplA 2393419 2394435 - putative lipoate-protein ligase A gene gene2154 http://www.ncbi.nlm.nih.gov/gene/?term=YE2184 YE2185 YE2185 nlpC nlpC 2395004 2395468 - putative lipoprotein gene gene2155 http://www.ncbi.nlm.nih.gov/gene/?term=YE2185 YE2186 YE2186 YE2186 2395730 2396116 - putative membrane protein gene gene2156 http://www.ncbi.nlm.nih.gov/gene/?term=YE2186 YE2187 YE2187 YE2187 2396113 2396457 - putative membrane protein gene gene2157 http://www.ncbi.nlm.nih.gov/gene/?term=YE2187 YE2188 YE2188 YE2188 2396454 2398118 - dolichyl-phosphate-mannose-protein mannosyltransferase-family protein gene gene2158 http://www.ncbi.nlm.nih.gov/gene/?term=YE2188 YE2189 YE2189 YE2189 2398118 2399020 - conserved hypothetical protein gene gene2159 http://www.ncbi.nlm.nih.gov/gene/?term=YE2189 YE2190 YE2190 YE2190 2399017 2401080 - probable formyl transferase gene gene2160 http://www.ncbi.nlm.nih.gov/gene/?term=YE2190 YE2191 YE2191 pmrF pmrF 2401077 2402060 - probable glycosyl transferase gene gene2161 http://www.ncbi.nlm.nih.gov/gene/?term=YE2191 YE2192 YE2192 YE2192 2402053 2403201 - conserved hypothteical protein gene gene2162 http://www.ncbi.nlm.nih.gov/gene/?term=YE2192 YE2193 YE2193 btuD btuD 2403548 2404309 - putative vitamin B12 transport ATP-binding protein gene gene2163 http://www.ncbi.nlm.nih.gov/gene/?term=YE2193 YE2194 YE2194 btuE btuE 2404331 2404885 - putative vitamin B12 transport protein gene gene2164 http://www.ncbi.nlm.nih.gov/gene/?term=YE2194 YE2195 YE2195 btuC btuC 2404955 2405962 - putative vitamin B12 transport system permease protein gene gene2165 http://www.ncbi.nlm.nih.gov/gene/?term=YE2195 YE2196 YE2196 YE2196 2406135 2406629 - putative exported protein gene gene2166 http://www.ncbi.nlm.nih.gov/gene/?term=YE2196 YE2198 YE2198 cysB cysB 2407702 2408676 - cys regulon transcriptional activator gene gene2167 http://www.ncbi.nlm.nih.gov/gene/?term=YE2198 YE2199 YE2199 topA topA 2409236 2411851 - DNA topoisomerase I gene gene2168 http://www.ncbi.nlm.nih.gov/gene/?term=YE2199 YE2201 YE2201 YE2201 2412292 2412543 + conserved hypothetical protein gene gene2169 http://www.ncbi.nlm.nih.gov/gene/?term=YE2201 YE2202 YE2202 tpn1330 tpn1330 2412636 2413829 - transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:CAC83041 (EMBL:AJ344215) (397 aa) fasta scores: E(): 5.4e-162%2C99.24 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2a IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.5e-113%2C 68.51 38d in 397 aa gene gene2170 http://www.ncbi.nlm.nih.gov/gene/?term=YE2202 YE2203 YE2203 sohB sohB 2413957 2415003 - peptidase family U7 protein gene gene2171 http://www.ncbi.nlm.nih.gov/gene/?term=YE2203 YE2204 YE2204 YE2204 2415176 2415937 + putative short chain dehydrogenase gene gene2172 http://www.ncbi.nlm.nih.gov/gene/?term=YE2204 YE2205 YE2205 btuR btuR 2415949 2416539 + cob(I)alamin adenosyltransferase gene gene2173 http://www.ncbi.nlm.nih.gov/gene/?term=YE2205 YE2206 YE2206 YE2206 2416616 2417545 - putative RNA pseudouridylate synthase-family protein gene gene2174 http://www.ncbi.nlm.nih.gov/gene/?term=YE2206 YE2207 YE2207 YE2207 2417906 2418526 - conserved hypothetical protein gene gene2175 http://www.ncbi.nlm.nih.gov/gene/?term=YE2207 YE2208 YE2208 trpH trpH 2418555 2419343 - conserved hypothetical protein gene gene2176 http://www.ncbi.nlm.nih.gov/gene/?term=YE2208 YE2209 YE2209 trpE trpE 2420029 2421591 + anthranilate synthase component I gene gene2177 http://www.ncbi.nlm.nih.gov/gene/?term=YE2209 YE2210 YE2210 trpG trpG 2421606 2422196 + anthranilate synthase component II gene gene2178 http://www.ncbi.nlm.nih.gov/gene/?term=YE2210 YE2211 YE2211 trpD trpD 2422314 2423273 + anthranilate phosphoribosyltransferase gene gene2179 http://www.ncbi.nlm.nih.gov/gene/?term=YE2211 YE2212 YE2212 trpC trpC 2423319 2424653 + tryptophan biosynthesis protein TrpCF gene gene2180 http://www.ncbi.nlm.nih.gov/gene/?term=YE2212 YE2213 YE2213 trpB trpB 2424837 2426027 + tryptophan synthase beta chain gene gene2181 http://www.ncbi.nlm.nih.gov/gene/?term=YE2213 YE2214 YE2214 trpA trpA 2426027 2426833 + tryptophan synthase alpha chain gene gene2182 http://www.ncbi.nlm.nih.gov/gene/?term=YE2214 YE2215 YE2215 YE2215 2427095 2427409 + putative lipoprotein gene gene2183 http://www.ncbi.nlm.nih.gov/gene/?term=YE2215 YE2216 YE2216 ompW ompW 2427708 2428343 - putative exported protein gene gene2184 http://www.ncbi.nlm.nih.gov/gene/?term=YE2216 YE2216A YE2216A YE2216A 2428604 2429047 + conserved hypothetical protein Similar to many proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YkgJ or b0288 or z0354 or ecs0318 SWALL:YKGJ_ECOLI (SWALL:P71300) (109 aa) fasta scores: E(): 5e-25%2C 58.33 38d in 108 aa%2C Pseudomonas aeruginosa hypothetical protein Pa3209 SWALL:Q9HZ31 (EMBL:AE004744) (123 aa) fasta scores: E(): 3.1e-22%2C 54.54 38d in 110 aa and to Acinetobacter calcoaceticus putative ferredoxin SWALL:FERX_ACICA (SWALL:P31004) (121 aa) fasta scores: E(): 3.6e-13%2C 43.1 38d in 116 aa gene gene2185 http://www.ncbi.nlm.nih.gov/gene/?term=YE2216A YE2218 YE2218 YE2218 2429099 2429866 + putative membrane protein gene gene2186 http://www.ncbi.nlm.nih.gov/gene/?term=YE2218 YE2219 YE2219 YE2219 2429913 2431667 - putative sulfate permease Similar to Vibrio cholerae sulfate permease family protein Vca0103 SWALL:Q9KN62 (EMBL:AE004353) (592 aa) fasta scores: E(): 7e-123%2C 57.81 38d in 550 aa and to Synechocystis sp. high affinity sulfate transporter Slr1776 SWALL:P72770 (EMBL:D90900) (566 aa) fasta scores: E(): 2.3e-47%2C 32.11 38d in 520 aa gene gene2187 http://www.ncbi.nlm.nih.gov/gene/?term=YE2219 YE2220 YE2220 ispZ ispZ 2431898 2432440 + putative intracellular septation protein gene gene2188 http://www.ncbi.nlm.nih.gov/gene/?term=YE2220 YE2221 YE2221 YE2221 2432556 2432930 + putative acyl-CoA thioester hydrolase gene gene2189 http://www.ncbi.nlm.nih.gov/gene/?term=YE2221 YE2222 YE2222 tonB tonB 2433026 2433787 - TonB protein gene gene2190 http://www.ncbi.nlm.nih.gov/gene/?term=YE2222 YE2223 YE2223 YE2223 2434095 2434391 + conserved hypothetical protein gene gene2191 http://www.ncbi.nlm.nih.gov/gene/?term=YE2223 YE2224 YE2224 YE2224 2434593 2434856 - conserved hypothetical protein gene gene2192 http://www.ncbi.nlm.nih.gov/gene/?term=YE2224 YE2225 YE2225 YE2225 2435008 2435730 - conserved hypothetical protein Similar to many proteins of undefined function including: Yersinia pestis hypothetical protein Ypo2779 SWALL:Q8ZD14 (EMBL:AJ414153) (232 aa) fasta scores: E(): 2.7e-44%2C 48.06 38d in 233 aa%2C and to Salmonella typhi hypothetical protein Sty1354 SWALL:Q8Z7C5 (EMBL:AL627270) (235 aa) fasta scores: E(): 8.2e-21%2C 33.79 38d in 219 aa gene gene2193 http://www.ncbi.nlm.nih.gov/gene/?term=YE2225 YE2227 YE2227 cls cls 2436800 2438260 + cardiolipin synthetase gene gene2194 http://www.ncbi.nlm.nih.gov/gene/?term=YE2227 YE2228 YE2228 YE2228 2438395 2438718 + conserved hypothetical protein gene gene2195 http://www.ncbi.nlm.nih.gov/gene/?term=YE2228 YE2229 YE2229 oppF oppF 2438864 2439865 - oligopeptide transport ATP-binding protein gene gene2196 http://www.ncbi.nlm.nih.gov/gene/?term=YE2229 YE2230 YE2230 oppD oppD 2439862 2440863 - oligopeptide transport ATP-binding protein gene gene2197 http://www.ncbi.nlm.nih.gov/gene/?term=YE2230 YE2231 YE2231 oppC oppC 2440875 2441780 - oligopeptide transport system permease protein gene gene2198 http://www.ncbi.nlm.nih.gov/gene/?term=YE2231 YE2232 YE2232 oppB oppB 2441799 2442719 - oligopeptide transport system permease protein gene gene2199 http://www.ncbi.nlm.nih.gov/gene/?term=YE2232 YE2233 YE2233 oppA oppA 2442804 2444441 - periplasmic oligopeptide-binding protein precursor gene gene2200 http://www.ncbi.nlm.nih.gov/gene/?term=YE2233 YE2234 YE2234 oppA2 oppA2 2444670 2446385 - periplasmic oligopeptide-binding protein precursor Similar to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA or b1243 SWALL:OPPA_ECOLI (SWALL:P23843) (543 aa) fasta scores: E(): 6.4e-140%2C 62.43 38d in 535 aa and to Haemophilus influenzae periplasmic oligopeptide-binding protein precursor OppA or Hi1124 SWALL:OPPA_HAEIN (SWALL:P71370) (541 aa) fasta scores: E(): 1.8e-111%2C 51.2 38d in 539 aa. Note this CDS is also highly similar to YE2233 64.991 identity in 537 aa overlap. gene gene2201 http://www.ncbi.nlm.nih.gov/gene/?term=YE2234 YE2237 YE2237 YE2237 2447238 2447882 - putative membrane protein gene gene2202 http://www.ncbi.nlm.nih.gov/gene/?term=YE2237 YE2238 YE2238 adhE adhE 2448583 2451258 + aldehyde-alcohol dehydrogenase gene gene2203 http://www.ncbi.nlm.nih.gov/gene/?term=YE2238 YE2239 YE2239 tdk tdk 2451758 2452357 - thymidine kinase gene gene2204 http://www.ncbi.nlm.nih.gov/gene/?term=YE2239 YE2240 YE2240 YE2240 2452327 2452599 + hypothetical protein doubtful CDS with no significant database hits gene gene2205 http://www.ncbi.nlm.nih.gov/gene/?term=YE2240 YE2241 YE2241 hns hns 2453110 2453520 + DNA-binding protein Hns gene gene2206 http://www.ncbi.nlm.nih.gov/gene/?term=YE2241 YE2242 YE2242 YE2242 2453903 2455252 - putative nucleotide sugar dehydrogenase gene gene2207 http://www.ncbi.nlm.nih.gov/gene/?term=YE2242 YE2243 YE2243 YE2243 2455574 2456590 - probable response regulator gene gene2208 http://www.ncbi.nlm.nih.gov/gene/?term=YE2243 YE2244 YE2244 YE2244 2456692 2457594 - putative exported protein Similar to many including: Salmonella typhimurium putative phosphoesterase YchK or Stm1754 SWALL:Q8ZP44 (EMBL:AE008778) (301 aa) fasta scores: E(): 1.6e-79%2C67.78 38d in 298 aa%2C Escherichia coli O157:H7 orf%2Chypothetical protein YchK or z2010 or ecs1736 SWALL:Q8XDB1 (EMBL:AE005340) (314 aa) fasta scores: E(): 2.5e-79%2C67.78 38d in 298 aa and Salmonella typhi hypothetical protein Sty1296 sty1296 SWALL:Q8Z7F2 (EMBL:AL627269) (301 aa) fasta scores: E(): 1.6e-78%2C 67.11 38d in 298 aa gene gene2209 http://www.ncbi.nlm.nih.gov/gene/?term=YE2244 YE2245 YE2245 YE2245 2457914 2458324 + hypothetical protein Weakly similar to several acetyltransferases including: Rhizobium meliloti putative acetyltransferase protein R01432 or Smc01017 SWALL:Q92QA6 (EMBL:AL591787) (156 aa) fasta scores: E(): 1.9e-11%2C 38.33 38d in 120 aa and to Azospirillum brasilense Iaa acetyltransferase SWALL:IAAT_AZOBR (SWALL:P26945) (153 aa) fasta scores: E(): 5.7e-11%2C 38.01 38d in 121 aa gene gene2210 http://www.ncbi.nlm.nih.gov/gene/?term=YE2245 YE2246 YE2246 YE2246 2458963 2459427 + conserved hypothetical protein gene gene2211 http://www.ncbi.nlm.nih.gov/gene/?term=YE2246 YE2247 YE2247 purU purU 2459509 2460357 + formyltetrahydrofolate deformylase gene gene2212 http://www.ncbi.nlm.nih.gov/gene/?term=YE2247 YE2253 YE2253 YE2253 2461446 2462306 - putative LysR-family transcriptional regulatory protein gene gene2214 http://www.ncbi.nlm.nih.gov/gene/?term=YE2253 YE2254 YE2254 xthA xthA 2463086 2463892 + exodeoxyribonuclease III gene gene2215 http://www.ncbi.nlm.nih.gov/gene/?term=YE2254 YE2255 YE2255 nudG nudG 2463976 2464362 + putative pyrophosphohydrolase gene gene2216 http://www.ncbi.nlm.nih.gov/gene/?term=YE2255 YE2256 YE2256 YE2256 2464367 2464657 - putative exported protein gene gene2217 http://www.ncbi.nlm.nih.gov/gene/?term=YE2256 YE2257 YE2257 topB topB 2464654 2466582 - DNA topoisomerase III gene gene2218 http://www.ncbi.nlm.nih.gov/gene/?term=YE2257 YE2258 YE2258 selD selD 2466626 2467672 - selenide%2C water dikinase gene gene2219 http://www.ncbi.nlm.nih.gov/gene/?term=YE2258 YE2259 YE2259 YE2259 2468002 2468553 - putative nitroreductase gene gene2220 http://www.ncbi.nlm.nih.gov/gene/?term=YE2259 YE2260 YE2260 sppA sppA 2468716 2470566 + protease IV gene gene2221 http://www.ncbi.nlm.nih.gov/gene/?term=YE2260 YE2261 YE2261 ansA ansA 2470810 2471826 + L-asparaginase I gene gene2222 http://www.ncbi.nlm.nih.gov/gene/?term=YE2261 YE2262 YE2262 pncA pncA 2471842 2472495 + putative pyrazinamidase/nicotinamidase gene gene2223 http://www.ncbi.nlm.nih.gov/gene/?term=YE2262 YE2263 YE2263 YE2263 2472570 2472842 - conserved hypothetical protein gene gene2224 http://www.ncbi.nlm.nih.gov/gene/?term=YE2263 YE2264 YE2264 YE2264 2472916 2473329 - conserved hypothetical protein gene gene2225 http://www.ncbi.nlm.nih.gov/gene/?term=YE2264 YE2265 YE2265 gapA gapA 2473668 2474672 + glyceraldehyde 3-phosphate dehydrogenase A gene gene2226 http://www.ncbi.nlm.nih.gov/gene/?term=YE2265 YE2266 YE2266 YE2266 2474848 2475159 - hypothetical protein no significant database hits gene gene2227 http://www.ncbi.nlm.nih.gov/gene/?term=YE2266 YE2267 YE2267 YE2267 2475249 2475458 - hypothetical protein no significant database hits gene gene2228 http://www.ncbi.nlm.nih.gov/gene/?term=YE2267 YE2268 YE2268 YE2268 2475540 2475749 - hypothetical protein no significant database hits gene gene2229 http://www.ncbi.nlm.nih.gov/gene/?term=YE2268 YE2269 YE2269 YE2269 2476274 2477152 + conserved hypothetical protein gene gene2230 http://www.ncbi.nlm.nih.gov/gene/?term=YE2269 YE2270 YE2270 tpn1330 tpn1330 2477460 2478653 + transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:CAC83041 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.74 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 1.1e-112%2C 68.26 38d in 397 aa gene gene2231 http://www.ncbi.nlm.nih.gov/gene/?term=YE2270 YE2271 YE2271 YE2271 2478725 2479495 - putative exported protein gene gene2232 http://www.ncbi.nlm.nih.gov/gene/?term=YE2271 YE2272 YE2272 YE2272 2480041 2481975 + conserved hypothetical protein gene gene2233 http://www.ncbi.nlm.nih.gov/gene/?term=YE2272 YE2273 YE2273 YE2273 2482087 2483364 + conserved hypothetical protein gene gene2234 http://www.ncbi.nlm.nih.gov/gene/?term=YE2273 YE2274 YE2274 YE2274 2483467 2484516 + putative membrane protein gene gene2235 http://www.ncbi.nlm.nih.gov/gene/?term=YE2274 YE2275 YE2275 YE2275 2484711 2485157 + putative exported protein no significant database hits gene gene2236 http://www.ncbi.nlm.nih.gov/gene/?term=YE2275 YE2276 YE2276 YE2276 2485170 2486075 - LysR-family transcriptional regulatory protein gene gene2237 http://www.ncbi.nlm.nih.gov/gene/?term=YE2276 YE2277 YE2277 YE2277 2486244 2487116 + conserved hypothetical protein gene gene2238 http://www.ncbi.nlm.nih.gov/gene/?term=YE2277 YE2278 YE2278 YE2278 2487463 2490057 + putative phosphodiesterase Weakly similar to many including: Rhizobium meliloti hypothetical protein R00959 or Smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 4.1e-83%2C 35 38d in 737 aa and to Acetobacter xylinus C-di-GMP phosphodiesterase a PdeA3 SWALL:O87378 (EMBL:AF052519) (740 aa) fasta scores: E(): 1.2e-81%2C 35.4 id in 723 aa. Contains many motifs which are commonly found in phosphodiesterases. gene gene2239 http://www.ncbi.nlm.nih.gov/gene/?term=YE2278 YE2279 YE2279 YE2279 2490228 2491418 + putative multidrug resistance protein gene gene2240 http://www.ncbi.nlm.nih.gov/gene/?term=YE2279 YE2280 YE2280 dadB dadB 2491633 2492700 - alanine racemase%2C catabolic Highly similar to Escherichia coli alanine racemase%2C catabolic DadX or DadB or AlnB or b1190 SWALL:ALR2_ECOLI (SWALL:P29012) (356 aa) fasta scores: E(): 3.6e-89%2C 63.38 38d in 355 aa and to Salmonella typhimurium alanine racemase%2C catabolic DadX or DadB or Stm1802 SWALL:ALR2_SALTY (SWALL:P06191) (356 aa) fasta scores: E(): 1.3e-87%2C 62.25 38d in 355 aa gene gene2241 http://www.ncbi.nlm.nih.gov/gene/?term=YE2280 YE2281 YE2281 dadA dadA 2492900 2494204 - D-amino acid dehydrogenase small subunit gene gene2242 http://www.ncbi.nlm.nih.gov/gene/?term=YE2281 YE2282 YE2282 YE2282 2494715 2496250 + conserved hypothetical protein gene gene2243 http://www.ncbi.nlm.nih.gov/gene/?term=YE2282 YE2283 YE2283 fadR fadR 2496336 2497055 - fatty acid metabolism regulatory protein gene gene2244 http://www.ncbi.nlm.nih.gov/gene/?term=YE2283 YE2284 YE2284 nhaB nhaB 2497366 2498940 + Na+/H+ antiporter gene gene2245 http://www.ncbi.nlm.nih.gov/gene/?term=YE2284 YE2285 YE2285 dsbB dsbB 2499170 2499700 + disulfide bond formation protein B gene gene2246 http://www.ncbi.nlm.nih.gov/gene/?term=YE2285 YE2286 YE2286 lpxA2 lpxA2 2499837 2500625 - acyl-[acyl-carrier-protein]--udp-N-acetylglucos amine O-acyltransferase Highly similar to Yersinia enterocolitica acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O-acyltransferase LpxA or YE3272 SWALL:LPXA_YEREN (SWALL:P32201) (262 aa) fasta scores: E(): 1.2e-58%2C 55.34 id in 262 aa%2C and to Escherichia coli acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O-acyltransferase LpxA or b0181 SWALL:LPXA_ECOLI (SWALL:P10440) (262 aa) fasta scores: E(): 2e-56%2C 55.72 id in 262 aa gene gene2247 http://www.ncbi.nlm.nih.gov/gene/?term=YE2286 YE2288 YE2288 YE2288 2501179 2501535 - hypothetical phage protein gene gene2248 http://www.ncbi.nlm.nih.gov/gene/?term=YE2288 YE2289 YE2289 YE2289 2502036 2502494 + putative phage membrane protein gene gene2249 http://www.ncbi.nlm.nih.gov/gene/?term=YE2289 YE2290 YE2290 YE2290 2502488 2502814 + putative phage-associated acyl carrier protein gene gene2250 http://www.ncbi.nlm.nih.gov/gene/?term=YE2290 YE2291 YE2291 YE2291 2503099 2503740 + hypothetical phage protein doubtful CDS with no significant database hits gene gene2251 http://www.ncbi.nlm.nih.gov/gene/?term=YE2291 YE2292 YE2292 YE2292 2504021 2504479 - putative phage tail fiber assembly protein gene gene2252 http://www.ncbi.nlm.nih.gov/gene/?term=YE2292 YE2293 YE2293 YE2293 2504488 2506299 - putative phage tail protein Similar to Salmonella typhi putative phage tail protein Hcm2.0051C SWALL:Q935B1 (EMBL:AL513384) (850 aa) fasta scores: E(): 3.1e-12%2C 26.89 38d in 409 aa%2C Yersinia pestis hypothetical phage protein Ypo2133 SWALL:Q8ZEM8 (EMBL:AJ414151) (305 aa) fasta scores: E(): 1.1e-23%2C37.41 38d in 302 aa and Salmonella typhimurium LT2 gifsy-2 prophage probable tail fiber protein Stm1049 SWALL:Q8ZQ81 (EMBL:AE008743) (812 aa) fasta scores: E(): 0.00023%2C25.79 38d in 442 aa gene gene2253 http://www.ncbi.nlm.nih.gov/gene/?term=YE2293 YE2294 YE2294 YE2294 2506325 2507029 - hypothetical phage-related protein Weakly similar to Bacteriophage 933W%2C Bacteriophage VT2-Sa%2C and Stx2 converting bacteriophage I hypothetical 23.1 kDa protein l0127 SWALL:Q9XJL4 (EMBL:AF125520) (205 aa) fasta scores: E(): 0.033%2C 29.37 38d in 160 aa and to Bacteriophage N15 Gp23 SWALL:O64337 (EMBL:AF064539) (225 aa) fasta scores: E(): 8.1%2C 25.83 38d in 240 aa gene gene2254 http://www.ncbi.nlm.nih.gov/gene/?term=YE2294 YE2295 YE2295 YE2295 2507029 2507295 - hypothetical phage protein no significant database hits gene gene2255 http://www.ncbi.nlm.nih.gov/gene/?term=YE2295 YE2296 YE2296 YE2296 2507298 2510480 - putative phage host specificity protein gene gene2256 http://www.ncbi.nlm.nih.gov/gene/?term=YE2296 YE2297 YE2297 YE2297 2510655 2510954 + hypothetical phage protein no significant database hits gene gene2257 http://www.ncbi.nlm.nih.gov/gene/?term=YE2297 YE2298 YE2298 YE2298 2510984 2511202 - hypothetical phage protein Similar to the N-terminus of many hypothetical E. coli proteins including: Escherichia coli hypothetical protein YdfR or b1555 SWALL:YDFR_ECOLI (SWALL:P76160) (103 aa) fasta scores: E(): 1.8e-05%2C 38.88 38d in 72 aa and to Escherichia coli O157:H7 hypothetical protein Ecs1531 or ecs3496 SWALL:Q8X4K2 (EMBL:AP002555) (114 aa) fasta scores: E(): 0.00034%2C 37.5 38d in 72 aa gene gene2258 http://www.ncbi.nlm.nih.gov/gene/?term=YE2298 YE2299 YE2299 YE2299 2511244 2511846 - putative phage tail assembly protein gene gene2259 http://www.ncbi.nlm.nih.gov/gene/?term=YE2299 YE2300 YE2300 YE2300 2511908 2512330 - hypothetical phage protein Similar to several including: Yersinia pestis hypothetical protein Y1020 or Ypmt1.32 SWALL:O68750 (EMBL:AF074611) (140 aa) fasta scores: E(): 4e-22%2C 49.63 id in 135 aa and to Salmonella typhi putative lipoprotein Hcm2.0080 SWALL:Q934Y7 (EMBL:AL513384) (140 aa) fasta scores: E(): 4.7e-22%2C 49.63 38d in 135 aa gene gene2260 http://www.ncbi.nlm.nih.gov/gene/?term=YE2300 YE2301 YE2301 YE2301 2512327 2512725 - phage-related membrane protein no significant database hits gene gene2261 http://www.ncbi.nlm.nih.gov/gene/?term=YE2301 YE2302 YE2302 YE2302 2512818 2513546 - hypothetical phage protein no significant database hits gene gene2262 http://www.ncbi.nlm.nih.gov/gene/?term=YE2302 YE2303 YE2303 YE2303 2513558 2513896 - hypothetical phage protein no significant database hits gene gene2263 http://www.ncbi.nlm.nih.gov/gene/?term=YE2303 YE2305 YE2305 YE2305 2514312 2514725 + hypothetical phage protein no significant database hits gene gene2264 http://www.ncbi.nlm.nih.gov/gene/?term=YE2305 YE2306 YE2306 YE2306 2514836 2515153 - hypothetical phage protein no significant database hits gene gene2265 http://www.ncbi.nlm.nih.gov/gene/?term=YE2306 YE2308 YE2308 YE2308 2515365 2515712 - TonB-related phage protein Similar to Escherichia coli TonB protein or exba or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 1.7e-09%2C 35.35 38d in 99 aa and to Yersinia enterocolitica TonB protein SWALL:TONB_YEREN (SWALL:Q05740) (255 aa) fasta scores: E(): 2.2e-06%2C 40 38d in 70 aa gene gene2266 http://www.ncbi.nlm.nih.gov/gene/?term=YE2308 YE2310 YE2310 YE2310 2515867 2516571 - putative phage minor tail protein gene gene2267 http://www.ncbi.nlm.nih.gov/gene/?term=YE2310 YE2311 YE2311 YE2311 2516574 2517326 - putative phage protein gene gene2268 http://www.ncbi.nlm.nih.gov/gene/?term=YE2311 YE2312 YE2312 YE2312 2517343 2517684 - putative phage protein gene gene2269 http://www.ncbi.nlm.nih.gov/gene/?term=YE2312 YE2313 YE2313 YE2313 2517687 2520482 - putative phage tail protein gene gene2270 http://www.ncbi.nlm.nih.gov/gene/?term=YE2313 YE2314 YE2314 YE2314 2520735 2520914 - hypothetical phage protein gene gene2271 http://www.ncbi.nlm.nih.gov/gene/?term=YE2314 YE2315 YE2315 YE2315 2521043 2521354 - hypothetical phage protein gene gene2272 http://www.ncbi.nlm.nih.gov/gene/?term=YE2315 YE2316 YE2316 YE2316 2521367 2522287 - putative phage protein gene gene2273 http://www.ncbi.nlm.nih.gov/gene/?term=YE2316 YE2317 YE2317 YE2317 2522354 2522761 - hypothetical phage protein gene gene2274 http://www.ncbi.nlm.nih.gov/gene/?term=YE2317 YE2318 YE2318 YE2318 2522758 2523342 - hypothetical phage protein gene gene2275 http://www.ncbi.nlm.nih.gov/gene/?term=YE2318 YE2319 YE2319 YE2319 2523344 2523694 - hypothetical phage protein gene gene2276 http://www.ncbi.nlm.nih.gov/gene/?term=YE2319 YE2320 YE2320 YE2320 2523694 2524221 - hypothetical phage protein gene gene2277 http://www.ncbi.nlm.nih.gov/gene/?term=YE2320 YE2321 YE2321 YE2321 2524224 2525429 - putative phage protein gene gene2278 http://www.ncbi.nlm.nih.gov/gene/?term=YE2321 YE2322 YE2322 YE2322 2525443 2526216 - hypothetical phage protein gene gene2279 http://www.ncbi.nlm.nih.gov/gene/?term=YE2322 YE2323 YE2323 YE2323 2526338 2527450 - hypothetical phage protein gene gene2280 http://www.ncbi.nlm.nih.gov/gene/?term=YE2323 YE2324 YE2324 YE2324 2527451 2528839 - putative phage protein gene gene2281 http://www.ncbi.nlm.nih.gov/gene/?term=YE2324 YE2325 YE2325 YE2325 2528839 2530401 - putative phage terminase large subunit Similar to Methanobacterium phage psiM2 large terminase subunit SWALL:O80199 (EMBL:AF065411) (468 aa) fasta scores: E(): 3.9%2C 26.72 38d in 434 aa and Bacteriophage Felix 01 hypothetical 60.1 kDa protein SWALL:O80226 (EMBL:AF071201) (533 aa) fasta scores: E(): 0.17%2C 22.96 38d in 331 aa gene gene2282 http://www.ncbi.nlm.nih.gov/gene/?term=YE2325 YE2326 YE2326 YE2326 2530398 2530970 - putative phage terminase%2C small subunit Similar to Bacteriophage SF6%2C and Bacteriophage rho-15 terminase small subunit 1 SWALL:TERS_BPSF6 (SWALL:Q38627) (151 aa) fasta scores: E(): 0.011%2C 30.06 id in 163 aa and to Bacteriophage bIL310 terminase SWALL:Q9AZI3 (EMBL:AF323671) (147 aa) fasta scores: E(): 0.0017%2C 38.46 38d in 91 aa gene gene2283 http://www.ncbi.nlm.nih.gov/gene/?term=YE2326 YE2327 YE2327 YE2327 2530999 2531142 + hypothetical phage protein doubtful CDS with no significant database hits gene gene2284 http://www.ncbi.nlm.nih.gov/gene/?term=YE2327 YE2328 YE2328 YE2328 2531348 2531527 - hypothetical phage protein doubtful CDS with no significant database hits gene gene2285 http://www.ncbi.nlm.nih.gov/gene/?term=YE2328 YE2329 YE2329 YE2329 2531679 2532017 + hypothetical phage protein no significant database hits gene gene2286 http://www.ncbi.nlm.nih.gov/gene/?term=YE2329 YE2331 YE2331 YE2331 2532181 2532870 - hypothetical phage-related protein weakly similar in parts to Pasteurella multocida hypothetical protein Pm1774 SWALL:Q9CK60 (EMBL:AE006214) (239 aa) fasta scores: E(): 8.7e-14%2C 31.55 38d in 206 aa and to Bacteriophage phi-80 hypothetical protein SWALL:Q38450 (EMBL:L40418) (184 aa) fasta scores: E(): 0.014%2C 24.54 38d in 110 aa gene gene2287 http://www.ncbi.nlm.nih.gov/gene/?term=YE2331 YE2333 YE2333 YE2333 2533506 2533898 - hypothetical phage exported protein Similar to several phage proteins including: Bacteriophage APSE-1 putative protein P14 SWALL:VP14_BPAPS (SWALL:Q9T1T4) (129 aa) fasta scores: E(): 0.00022%2C 27.86 id in 122 aa%2C Bacteriophage SfV putative lytic protein RZ SWALL:Q8SBD9 (EMBL:U82619) (130 aa) fasta scores: E(): 6.7e-08%2C 35.29 38d in 102 aa and Salmonella typhi putative bacteriophage protein Sty2043 SWALL:Q8Z618 (EMBL:AL627272) (130 aa) fasta scores: E(): 2.2e-06%2C 32.35 38d in 102 aa gene gene2288 http://www.ncbi.nlm.nih.gov/gene/?term=YE2333 YE2334 YE2334 YE2334 2533883 2534365 - putative phage lysozyme gene gene2289 http://www.ncbi.nlm.nih.gov/gene/?term=YE2334 YE2335 YE2335 YE2335 2534688 2535218 - hypothetical phage protein Weakly similar in parts to Escherichia coli O157:H7 hypothetical protein Z3935 or Ecs3504 SWALL:Q8X989 (EMBL:AE005493) (201 aa) fasta scores: E(): 1.2e-18%2C38.09 38d in 168 aa and to Bacteriophage phiYeO3-12 putative hypothetical protein SWALL:Q9T140 (EMBL:AJ251805) (157 aa) fasta scores: E(): 1.2e-07%2C 35.53 38d in 121 aa gene gene2290 http://www.ncbi.nlm.nih.gov/gene/?term=YE2335 YE2336 YE2336 YE2336 2535454 2535942 - putative late gene antiterminator protein Similar to Bacteriophage Nil2 late gene antiterminator Q SWALL:CAC95104 (EMBL:AJ413274) (162 aa) fasta scores: E(): 1.5e-46%2C 70.37 38d in 162 aa and to Bacteriophage 21 protein Q SWALL:Q9XJQ6 (EMBL:AJ237660) (161 aa) fasta scores: E(): 1e-42%2C 67.28 38d in 162 aa gene gene2291 http://www.ncbi.nlm.nih.gov/gene/?term=YE2336 YE2337 YE2337 YE2337 2535939 2536547 - NinG-like phage protein Similar to Bacteriophage lambda protein NinG SWALL:NING_LAMBD (SWALL:P03770) (204 aa) fasta scores: E(): 1.2e-15%2C 36.53 38d in 208 aa and to Bacteriophage P22 protein NinG SWALL:NING_BPP22 (SWALL:Q38667) (203 aa) fasta scores: E(): 9e-16%2C 36.09 38d in 205 aa gene gene2292 http://www.ncbi.nlm.nih.gov/gene/?term=YE2337 YE2339 YE2339 YE2339 2536905 2537351 - NinB-like phage protein Similar to Bacteriophage lambda protein NinB SWALL:NINB_LAMBD (SWALL:P03765) (146 aa) fasta scores: E(): 2.2e-27%2C 52.77 38d in 144 aa%2C and to Yersinia pestis KIM putative phage protein Y2223 SWALL:AAM85783 (EMBL:AE013825) (148 aa) fasta scores: E(): 7.5e-55%2C95.94 38d in 148 aa gene gene2293 http://www.ncbi.nlm.nih.gov/gene/?term=YE2339 YE2340 YE2340 YE2340 2537344 2537745 - hypothetical phage protein no significant database hits gene gene2294 http://www.ncbi.nlm.nih.gov/gene/?term=YE2340 YE2341 YE2341 YE2341 2537742 2538044 - hypothetical phage protein no significant database hits gene gene2295 http://www.ncbi.nlm.nih.gov/gene/?term=YE2341 YE2342 YE2342 YE2342 2538041 2538268 - hypothetical phage protein no significant database hits gene gene2296 http://www.ncbi.nlm.nih.gov/gene/?term=YE2342 YE2343 YE2343 YE2343 2538309 2538902 + hypothetical phage protein no significant database hits gene gene2297 http://www.ncbi.nlm.nih.gov/gene/?term=YE2343 YE2344 YE2344 YE2344 2539004 2539240 - hypothetical phage protein no significant database hits gene gene2298 http://www.ncbi.nlm.nih.gov/gene/?term=YE2344 YE2345 YE2345 YE2345 2539237 2539932 - DNA replication protein Similar to Bacteriophage lambda replication protein P SWALL:VRPP_LAMBD (SWALL:P03689) (233 aa) fasta scores: E(): 2.1e-31%2C 38.09 38d in 231 aa and to Bacteriophage 933W%2C and Stx2 converting bacteriophage I lambda replication protein P orthologue SWALL:O32558 (EMBL:Y10775) (233 aa) fasta scores: E(): 9.9e-32%2C 38.96 id in 231 aa gene gene2299 http://www.ncbi.nlm.nih.gov/gene/?term=YE2345 YE2346 YE2346 YE2346 2539929 2540828 - putative DNA-binding phage protein Similar to Salmonella typhimurium hypothetical 36.5 kDa protein SWALL:O84892 (EMBL:AF001386) (325 aa) fasta scores: E(): 6e-23%2C 54.96 38d in 131 aa and to Bacteriophage HK022 DNA replication o O SWALL:Q37929 (EMBL:U02466) (299 aa) fasta scores: E(): 2.8%2C 25.4 38d in 185 aa gene gene2300 http://www.ncbi.nlm.nih.gov/gene/?term=YE2346 YE2347 YE2347 YE2347 2540825 2541490 - hypothetical phage related protein Similar to Bacteriophage Mx8 hypothetical 25.3 kDa protein SWALL:O03965 (EMBL:U64984) (222 aa) fasta scores: E(): 4.4e-15%2C 34.71 38d in 242 aa and to Xylella fastidiosa phage-related protein xf0485 SWALL:Q9PG17 (EMBL:AE003898) (181 aa) fasta scores: E(): 2.5e-13%2C35.48 38d in 217 aa gene gene2301 http://www.ncbi.nlm.nih.gov/gene/?term=YE2347 YE2348 YE2348 YE2348 2541497 2541742 - hypothetical phage protein doubtful CDS with no significant database hits gene gene2302 http://www.ncbi.nlm.nih.gov/gene/?term=YE2348 YE2349 YE2349 YE2349 2541846 2542118 - phage transcriptional regulatory protein Similar to Bacteriophage P22 transcriptional activator protein CI SWALL:RPC1_BPP22 (SWALL:P03041) (92 aa) fasta scores: E(): 8.5e-14%2C 52.8 38d in 89 aa and to Bacteriophage lambda regulatory protein cII SWALL:RPC2_LAMBD (SWALL:P03042) (97 aa) fasta scores: E(): 1.9e-11%2C 48.1 38d in 79 aa gene gene2303 http://www.ncbi.nlm.nih.gov/gene/?term=YE2349 YE2349A YE2349A YE2349A 2542234 2542458 - phage transcriptional regulatory protein gene gene2304 http://www.ncbi.nlm.nih.gov/gene/?term=YE2349A YE2350 YE2350 cI cI 2542568 2543167 + repressor protein CI Similar to Bacteriophage D3 repressor protein CI SWALL:RPC1_BPD3 (SWALL:Q37906) (223 aa) fasta scores: E(): 0.0013%2C 26.98 38d in 189 aa%2C and to Bacteriophage 434 repressor protein CI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2%2C 29.87 38d in 77 aa gene gene2305 http://www.ncbi.nlm.nih.gov/gene/?term=YE2350 YE2350A YE2350A YE2350A 2543486 2543716 - hypothetical phage protein no significant database hits gene gene2306 http://www.ncbi.nlm.nih.gov/gene/?term=YE2350A YE2351 YE2351 YE2351 2544069 2544377 - hypothetical phage protein no significant database hits gene gene2307 http://www.ncbi.nlm.nih.gov/gene/?term=YE2351 YE2352 YE2352 YE2352 2544663 2545238 + hypothetical phage protein no significant database hits gene gene2308 http://www.ncbi.nlm.nih.gov/gene/?term=YE2352 YE2353 YE2353 YE2353 2545366 2545776 + hypothetical phage protein no significant database hits gene gene2309 http://www.ncbi.nlm.nih.gov/gene/?term=YE2353 YE2355 YE2355 YE2355 2546079 2546744 + exodeoxyribonuclease Similar to Escherichia coli exodeoxyribonuclease X ExoX or b1844 SWALL:EXOX_ECOLI (SWALL:P76281) (220 aa) fasta scores: E(): 4.9e-45%2C 50.23 38d in 217 aa and to Salmonella typhimurium%2C and Salmonella typhi DNA exonuclease X%2C degrades ss and ds DNA with 3'-5' polarity ExoX or Stm1878 or Sty2084 SWALL:Q8XFN9 (EMBL:AE008783) (232 aa) fasta scores: E(): 4.5e-44%2C 49.3 38d in 217 aa gene gene2310 http://www.ncbi.nlm.nih.gov/gene/?term=YE2355 YE2356 YE2356 YE2356 2546744 2547409 + hypothetical phage ATP/GTP-binding protein Similar to Bacteriophage HK620 hypothetical 25.6 kDa protein hkaL SWALL:Q9AZ29 (EMBL:AF335538) (226 aa) fasta scores: E(): 4.1e-47%2C 62.67 38d in 217 aa. Also weakly similar to Fusobacterium nucleatum DNA repair protein RadA fn0157 SWALL:Q8RGX0 (EMBL:AE010529) (452 aa) fasta scores: E(): 2.9%2C 21.17 38d in 222 aa gene gene2311 http://www.ncbi.nlm.nih.gov/gene/?term=YE2356 YE2357 YE2357 YE2357 2547409 2548086 + hypothetical phage protein Similar to Bacteriophage HK620 hypothetical 21.3 kDa protein HkaK SWALL:Q9AZ30 (EMBL:AF335538) (195 aa) fasta scores: E(): 1.2e-13%2C 37.43 38d in 179 aa gene gene2312 http://www.ncbi.nlm.nih.gov/gene/?term=YE2357 YE2358 YE2358 YE2358 2548482 2548850 + hypothetical exported phage protein Similar to Shigella sonnei plasmid hypothetical protein CjI SWALL:Q93Q54 (EMBL:AF282884) (129 aa) fasta scores: E(): 0.0038%2C 28.33 38d in 120 aa gene gene2313 http://www.ncbi.nlm.nih.gov/gene/?term=YE2358 YE2359 YE2359 YE2359 2549000 2549503 + hypothetical phage protein no significant database hits gene gene2314 http://www.ncbi.nlm.nih.gov/gene/?term=YE2359 YE2361 YE2361 dam dam 2550161 2551021 + putative adenine-specific modification methylase Similar to Enterococcus faecalis MunI-like protein SWALL:Q9L8Z8 (EMBL:AF192329) (180 aa) fasta scores: E(): 3.3e-10%2C 40.19 38d in 204 aa and to Mycoplasma sp adenine-specific modification methylase MunI muniM SWALL:MTMU_MYCSP (SWALL:P43641) (233 aa) fasta scores: E(): 4.5e-05%2C 29.43 38d in 231 aa gene gene2315 http://www.ncbi.nlm.nih.gov/gene/?term=YE2361 YE2362 YE2362 dcm dcm 2551018 2552763 + putative cytosine-specific modification methylase Similar to Bacteriophage phi-H cytosine methylase Dcm5A SWALL:Q38204 (EMBL:X80164) (245 aa) fasta scores: E(): 3.5e-14%2C 33.99 38d in 253 aa and to Rhizobium loti modification methylase Mlr8517 SWALL:Q982S6 (EMBL:AP003014) (667 aa) fasta scores: E(): 2.4e-27%2C35.97 38d in 656 aa%3B deleted EC_number 2.1.1.73 gene gene2316 http://www.ncbi.nlm.nih.gov/gene/?term=YE2362 YE2363 YE2363 YE2363 2553100 2553348 + putative phage excisionase gene gene2317 http://www.ncbi.nlm.nih.gov/gene/?term=YE2363 YE2364 YE2364 int int 2553376 2554665 + putative phage integrase gene gene2318 http://www.ncbi.nlm.nih.gov/gene/?term=YE2364 YE2365 YE2365 YE2365 2554690 2555136 - conserved hypothetical protein gene gene2319 http://www.ncbi.nlm.nih.gov/gene/?term=YE2365 YE2366 YE2366 YE2366 2555251 2555907 - putative fumarylacetoacetate hydrolase family protein gene gene2320 http://www.ncbi.nlm.nih.gov/gene/?term=YE2366 YE2367 YE2367 YE2367 2555988 2556911 - putative lipoprotein gene gene2321 http://www.ncbi.nlm.nih.gov/gene/?term=YE2367 YE2368 YE2368 YE2368 2557100 2557372 - conserved hypothetical protein gene gene2322 http://www.ncbi.nlm.nih.gov/gene/?term=YE2368 YE2370 YE2370 YE2370 2557576 2557941 - putative exported protein no significant database hits. Note that this CDS is rich in the amino acids Gln%2C Lys%2C Ala and Ser gene gene2323 http://www.ncbi.nlm.nih.gov/gene/?term=YE2370 YE2371 YE2371 minC minC 2558490 2559176 + cell division inhibitor gene gene2324 http://www.ncbi.nlm.nih.gov/gene/?term=YE2371 YE2372 YE2372 minD minD 2559202 2560014 + septum site-determining protein gene gene2325 http://www.ncbi.nlm.nih.gov/gene/?term=YE2372 YE2373 YE2373 minE minE 2560018 2560287 + cell division topological specificity factor gene gene2326 http://www.ncbi.nlm.nih.gov/gene/?term=YE2373 YE2374 YE2374 rnd rnd 2560426 2561547 - ribonuclease D gene gene2327 http://www.ncbi.nlm.nih.gov/gene/?term=YE2374 YE2375 YE2375 fadD fadD 2561645 2563339 - long-chain-fatty-acid-CoA ligase gene gene2328 http://www.ncbi.nlm.nih.gov/gene/?term=YE2375 YE2376 YE2376 YE2376 2563680 2564231 - putative lipoprotein gene gene2329 http://www.ncbi.nlm.nih.gov/gene/?term=YE2376 YE2377 YE2377 YE2377 2564392 2565090 - conserved hypothetical protein gene gene2330 http://www.ncbi.nlm.nih.gov/gene/?term=YE2377 YE2378 YE2378 YE2378 2565165 2566991 - putative DEAD box family helicase gene gene2331 http://www.ncbi.nlm.nih.gov/gene/?term=YE2378 YE2379 YE2379 YE2379 2567198 2567542 + conserved hypothetical protein gene gene2332 http://www.ncbi.nlm.nih.gov/gene/?term=YE2379 YE2380 YE2380 YE2380 2567675 2567965 - putative integral membrane protein gene gene2333 http://www.ncbi.nlm.nih.gov/gene/?term=YE2380 YE2381 YE2381 YE2381 2567991 2568371 - putative inner membrane protein Similar to many other putative membrane integral proteins including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YdgF or b1600 or z2594 or ecs2306 SWALL:YDGF_ECOLI (SWALL:P77412) (121 aa) fasta scores: E(): 4.8e-25%2C 72.32 38d in 112 aa%2C Pseudomonas aeruginosa probable drug efflux transporter pa1541 SWALL:Q9I3H2 (EMBL:AE004582) (122 aa) fasta scores: E(): 4.4e-18%2C 52.5 38d in 120 aa and Rhizobium meliloti putative multidrug transmembrane resistance signal peptide protein R01614 or Smc01179 SWALL:Q92PW0 (EMBL:AL591787) (114 aa) fasta scores: E(): 5.5e-14%2C 48.57 38d in 105 aa gene gene2334 http://www.ncbi.nlm.nih.gov/gene/?term=YE2381 YE2382 YE2382 eda eda 2568967 2569608 - KHG/KDPG aldolase gene gene2335 http://www.ncbi.nlm.nih.gov/gene/?term=YE2382 YE2383 YE2383 zwf zwf 2569863 2571347 - glucose-6-phosphate 1-dehydrogenase gene gene2336 http://www.ncbi.nlm.nih.gov/gene/?term=YE2383 YE2384 YE2384 hexR hexR 2571700 2572569 + hex regulon repressor gene gene2337 http://www.ncbi.nlm.nih.gov/gene/?term=YE2384 YE2385 YE2385 pykA pykA 2572789 2574231 + pyruvate kinase II gene gene2338 http://www.ncbi.nlm.nih.gov/gene/?term=YE2385 YE2386 YE2386 msbB msbB 2574322 2575284 - lipid A biosynthesis acyltransferase gene gene2339 http://www.ncbi.nlm.nih.gov/gene/?term=YE2386 YE2387 YE2387 YE2387 2575368 2576621 - putative M23/M37 peptidase-family protein gene gene2340 http://www.ncbi.nlm.nih.gov/gene/?term=YE2387 YE2388 YE2388 znuA znuA 2576699 2577661 - exported high-affinity zinc uptake system protein gene gene2341 http://www.ncbi.nlm.nih.gov/gene/?term=YE2388 YE2389 YE2389 znuC znuC 2577737 2578495 + high-affinity zinc uptake system ATP-binding protein gene gene2342 http://www.ncbi.nlm.nih.gov/gene/?term=YE2389 YE2390 YE2390 znuB znuB 2578492 2579277 + high-affinity zinc uptake system membrane protein gene gene2343 http://www.ncbi.nlm.nih.gov/gene/?term=YE2390 YE2391 YE2391 YE2391 2579738 2581219 + putative peptide transporter Similar to many amino acid transport proteins including: Lactococcus lactis di-/tripeptide transporter DtpT or ll0702 SWALL:DTPT_LACLA (SWALL:P36574) (497 aa) fasta scores: E(): 1.9e-19%2C 29.69 38d in 495 aa and to Salmonella typhi putative PTR2 family transport protein Sty4211 SWALL:Q8Z269 (EMBL:AL627281) (489 aa) fasta scores: E(): 7.9e-160%2C 82.82 38d in 489 aa gene gene2344 http://www.ncbi.nlm.nih.gov/gene/?term=YE2391 YE2392 YE2392 ruvB ruvB 2581270 2582274 - Holliday junction DNA helicase gene gene2345 http://www.ncbi.nlm.nih.gov/gene/?term=YE2392 YE2393 YE2393 ruvA ruvA 2582310 2582927 - Holliday junction DNA helicase gene gene2346 http://www.ncbi.nlm.nih.gov/gene/?term=YE2393 YE2394 YE2394 ruvC ruvC 2583050 2583571 - crossover junction endodeoxyribonuclease gene gene2347 http://www.ncbi.nlm.nih.gov/gene/?term=YE2394 YE2395 YE2395 YE2395 2583739 2584482 - conserved hypothetical protein gene gene2348 http://www.ncbi.nlm.nih.gov/gene/?term=YE2395 YE2396 YE2396 nudB nudB 2584623 2585045 - putative dATP pyrophosphohydrolase gene gene2349 http://www.ncbi.nlm.nih.gov/gene/?term=YE2396 YE2397 YE2397 aspS aspS 2585205 2587001 - aspartyl-tRNA synthetase gene gene2350 http://www.ncbi.nlm.nih.gov/gene/?term=YE2397 YE2398 YE2398 YE2398 2587549 2588145 + putative isochorismatase Similar to many proposed isochorismatases including: Salmonella typhimurium%2C and Salmonella typhi putative isochorismatase YecD or Stm1902 or Sty2110 SWALL:Q8XEW8 (EMBL:AE008785) (188 aa) fasta scores: E(): 2.1e-46%2C 66.13 38d in 189 aa and to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical isochorismatase family protein YecD or b1867 or z2920 or ecs2577 SWALL:YECD_ECOLI (SWALL:P37347) (199 aa) fasta scores: E(): 8.2e-46%2C 65.6 38d in 189 aa gene gene2351 http://www.ncbi.nlm.nih.gov/gene/?term=YE2398 YE2399 YE2399 YE2399 2588193 2589008 + conserved hypothetical protein gene gene2352 http://www.ncbi.nlm.nih.gov/gene/?term=YE2399 YE2400 YE2400 YE2400 2589200 2589595 + putative membrane protein gene gene2353 http://www.ncbi.nlm.nih.gov/gene/?term=YE2400 YE2401 YE2401 YE2401 2589884 2590585 + conserved hypothetical protein gene gene2354 http://www.ncbi.nlm.nih.gov/gene/?term=YE2401 YE2402 YE2402 YE2402 2590582 2591553 + conserved hypothetical protein gene gene2355 http://www.ncbi.nlm.nih.gov/gene/?term=YE2402 YE2403 YE2403 cutC cutC 2591613 2592377 - putative copper homeostasis protein gene gene2356 http://www.ncbi.nlm.nih.gov/gene/?term=YE2403 YE2404 YE2404 YE2404 2592619 2593179 - conserved hypothetical protein gene gene2357 http://www.ncbi.nlm.nih.gov/gene/?term=YE2404 YE2406 YE2406 argS argS 2593550 2595280 + arginyl-tRNA synthetase gene gene2358 http://www.ncbi.nlm.nih.gov/gene/?term=YE2406 YE2407 YE2407 YE2407 2595338 2600218 - putative hemolysin gene gene2359 http://www.ncbi.nlm.nih.gov/gene/?term=YE2407 YE2408 YE2408 YE2408 2600399 2602066 - putative hemolysin activator protein gene gene2360 http://www.ncbi.nlm.nih.gov/gene/?term=YE2408 YE2409 YE2409 mviN mviN 2602499 2604034 - putative membrane protein gene gene2361 http://www.ncbi.nlm.nih.gov/gene/?term=YE2409 YE2410 YE2410 mviM mviM 2604172 2605092 - putative oxidoreductase (pseudogene) Similar to Salmonella typhimurium virulence factor MviM or Stm1169 SWALL:MVIM_SALTY (SWALL:P37168) (307 aa) fasta scores: E(): 1.9e-70%2C 60.13 38d in 306 aa%2C Yersinia pestis putative oxidoreductase Ypo2042 SWALL:Q8ZEW1 (EMBL:AJ414151) (536 aa) fasta scores: E(): 1.2e-104%2C79.66 38d in 536 aa and to Escherichia coli virulence factor MviM homolog or b1068 SWALL:MVIM_ECOLI (SWALL:P75931) (307 aa) fasta scores: E(): 1.2e-72%2C 61.11 id in 306 aa. Note this CDS has undergone a deletion which has resulted in a frameshift mutation following codon 213. pseudogene gene2362 http://www.ncbi.nlm.nih.gov/gene/?term=YE2410 YE2412 YE2412 rimJ rimJ 2605773 2606357 - ribosomal-protein-alanine acetyltransferase gene gene2363 http://www.ncbi.nlm.nih.gov/gene/?term=YE2412 YE2414 YE2414 YE2414 2606977 2607462 + putative inner membrane protein no significant database hits gene gene2364 http://www.ncbi.nlm.nih.gov/gene/?term=YE2414 YE2415 YE2415 YE2415 2607472 2607768 + putative inner membrane protein no significant database hits gene gene2365 http://www.ncbi.nlm.nih.gov/gene/?term=YE2415 YE2416 YE2416 YE2416 2607780 2608097 - putative inner membrane protein Similar to Clostridium perfringens hypothetical protein Cpe0255 SWALL:Q8XNS7 (EMBL:AP003186) (104 aa) fasta scores: E(): 9%2C 28.71 38d in 101 aa gene gene2366 http://www.ncbi.nlm.nih.gov/gene/?term=YE2416 YE2418 YE2418 YE2418 2608774 2609979 + putative membrane protein gene gene2367 http://www.ncbi.nlm.nih.gov/gene/?term=YE2418 YE2419 YE2419 YE2419 2610197 2610760 + putative lipoprotein gene gene2368 http://www.ncbi.nlm.nih.gov/gene/?term=YE2419 YE2420 YE2420 YE2420 2610798 2611361 - conserved hypothetical protein gene gene2369 http://www.ncbi.nlm.nih.gov/gene/?term=YE2420 YE2421 YE2421 YE2421 2611424 2612161 - conserved hypothetical protein gene gene2370 http://www.ncbi.nlm.nih.gov/gene/?term=YE2421 YE2422 YE2422 YE2422 2612310 2613251 - putative oxidoreductase Similar to Salmonella typhi putative 2-hydroxyacid dehydrogenase in Sty1172 SWALL:Q8Z7M6 (EMBL:AL627269) (312 aa) fasta scores: E(): 2.4e-66%2C 55.73 38d in 314 aa and to Escherichia coli putative 2-hydroxyacid dehydrogenase YcdW or b1033 SWALL:YCDW_ECOLI (SWALL:P75913) (325 aa) fasta scores: E(): 7.9e-66%2C 54.95 38d in 313 aa gene gene2371 http://www.ncbi.nlm.nih.gov/gene/?term=YE2422 YE2423 YE2423 YE2423 2613769 2614653 + putative exported protein gene gene2373 http://www.ncbi.nlm.nih.gov/gene/?term=YE2423 YE2425 YE2425 YE2425 2614957 2616072 - putative inner membrane protein Similar to many proteins of undefined function including: Listeria monocytogenes hypothetical protein Lmo2174 SWALL:Q8Y595 (EMBL:AL591982) (357 aa) fasta scores: E(): 2e-17%2C 31.59 38d in 345 aa and to Aquifex aeolicus hypothetical protein Aq_035 SWALL:O66451 (EMBL:AE000670) (431 aa) fasta scores: E(): 1.1e-16%2C30.85 38d in 269 aa gene gene2375 http://www.ncbi.nlm.nih.gov/gene/?term=YE2425 YE2426 YE2426 YE2426 2616627 2618324 + conserved hypothetical protein gene gene2376 http://www.ncbi.nlm.nih.gov/gene/?term=YE2426 YE2427 YE2427 kdsA kdsA 2618400 2619254 - 2-dehydro-3-deoxyphosphooctonate aldolase gene gene2377 http://www.ncbi.nlm.nih.gov/gene/?term=YE2427 YE2428 YE2428 YE2428 2619395 2620204 - conserved hypothetical protein gene gene2378 http://www.ncbi.nlm.nih.gov/gene/?term=YE2428 YE2429 YE2429 YE2429 2620201 2620602 - putative membrane protein gene gene2379 http://www.ncbi.nlm.nih.gov/gene/?term=YE2429 YE2430 YE2430 YE2430 2620620 2621474 - putative protoporphyrinogen oxidase gene gene2380 http://www.ncbi.nlm.nih.gov/gene/?term=YE2430 YE2431 YE2431 prfA prfA 2621474 2622556 - peptide chain release factor 1 gene gene2381 http://www.ncbi.nlm.nih.gov/gene/?term=YE2431 YE2432 YE2432 hemA hemA 2622588 2623850 - glutamyl-tRNA reductase gene gene2382 http://www.ncbi.nlm.nih.gov/gene/?term=YE2432 YE2433 YE2433 YE2433 2624155 2624778 + putative lipoprotein gene gene2383 http://www.ncbi.nlm.nih.gov/gene/?term=YE2433 YE2434 YE2434 ipk ipk 2624822 2625661 + putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase gene gene2384 http://www.ncbi.nlm.nih.gov/gene/?term=YE2434 YE2435 YE2435 prsA prsA 2625859 2626806 + ribose-phosphate pyrophosphokinase gene gene2385 http://www.ncbi.nlm.nih.gov/gene/?term=YE2435 YE2436 YE2436 YE2436 2627161 2627433 - putative membrane protein gene gene2386 http://www.ncbi.nlm.nih.gov/gene/?term=YE2436 YE2437 YE2437 pth pth 2627765 2628358 + peptidyl-tRNA hydrolase gene gene2387 http://www.ncbi.nlm.nih.gov/gene/?term=YE2437 YE2438 YE2438 YE2438 2628413 2628871 - putative exported protein no significant database hits gene gene2388 http://www.ncbi.nlm.nih.gov/gene/?term=YE2438 YE2439 YE2439 YE2439 2629139 2630230 + conserved hypothetical protein gene gene2389 http://www.ncbi.nlm.nih.gov/gene/?term=YE2439 YE2440 YE2440 ampC ampC 2630376 2631542 - beta-lactamase Previously sequenced: Yersinia enterocolitica beta-lactamase precursor AmpC SWALL:AMPC_YEREN (SWALL:P45460) (388 aa) fasta scores: E(): 1.5e-150%2C97.93 38d in 388 aa%2C and to Citrobacter freundii beta-lactamase precursor blaC SWALL:Q59276 (EMBL:D13207) (381 aa) fasta scores: E(): 8.1e-87%2C 56.95 38d in 388 aa gene gene2390 http://www.ncbi.nlm.nih.gov/gene/?term=YE2440 YE2441 YE2441 ampR ampR 2631677 2632561 + transcriptional activator protein Previously sequenced: Yersinia enterocolitica transcriptional activator protein AmpR SWALL:AMPR_YEREN (SWALL:P45461) (294 aa) fasta scores: E(): 5.2e-104%2C91.55 38d in 296 aa.Also highly similar to Enterobacter cloacae AmpR protein SWALL:O83025 (EMBL:AB016612) (291 aa) fasta scores: E(): 1.2e-83%2C 70.69 38d in 290 aa gene gene2391 http://www.ncbi.nlm.nih.gov/gene/?term=YE2441 YE2442 YE2442 YE2442 2632668 2633324 - putative inner membrane protein Similar to Escherichia coli hypothetical protein YebE or b1846 SWALL:YEBE_ECOLI (SWALL:P33218) (219 aa) fasta scores: E(): 2.6e-55%2C 67.58 38d in 219 aa%2CSalmonella typhimurium putative inner membrane protein YebE or Stm1880 SWALL:Q8ZNW8 (EMBL:AE008783) (219 aa) fasta scores: E(): 1.4e-54%2C 67.28 38d in 217 aa. Previously partially sequenced as: Yersinia enterocolitica hypothetical protein in ampR 5'region SWALL:YEBE_YEREN (SWALL:P45462) (139 aa) fasta scores: E(): 2.3e-46%2C 95.68 id in 139 aa gene gene2392 http://www.ncbi.nlm.nih.gov/gene/?term=YE2442 YE2443 YE2443 YE2443 2633539 2633874 - hypothetical protein no significant database hits gene gene2393 http://www.ncbi.nlm.nih.gov/gene/?term=YE2443 YE2444 YE2444 YE2444 2634101 2634670 + putative exported protein no significant database hits gene gene2394 http://www.ncbi.nlm.nih.gov/gene/?term=YE2444 YE2445 YE2445 YE2445 2634688 2635260 - transposase (pseudogene) Similar to many transposases including: Escherichia coli SWALL:Q9L909 (EMBL:AF188737) (406 aa) fasta scores: E(): 1.5e-140%2C 85.46 38d in 406 aa and Bordetella parapertussis transposase for insertion sequence element IS1001 TnpA SWALL:TNPA_BORPA (SWALL:Q06126) (406 aa) fasta scores: E(): 1.5e-22%2C 26.97 38d in 393 aa. Note this CDS carries multiple frame shift mutations. gene gene2395 http://www.ncbi.nlm.nih.gov/gene/?term=YE2445 YE2447 YE2447 YE2447 2635919 2636509 - putative type III secreted effector protein Highly similar to Shigella flexneri%2C and Shigella flexneri 2a OspG%2C secreted by the Mxi-Spa type III secretion machinery%2C function unknown ospg or s0237 SWALL:Q99PZ6 (EMBL:AL391753) (196 aa) fasta scores: E(): 1e-67%2C 91.32 38d in 196 aa gene gene2396 http://www.ncbi.nlm.nih.gov/gene/?term=YE2447 YE2448 YE2448 agaR agaR 2636942 2637751 - DeoR-family regulatory protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 putative N-acetyl galactosamine utilization operon transcriptional repressor AgaR or b3131 or z4483 or ecs4009 SWALL:AGAR_ECOLI (SWALL:P42902) (269 aa) fasta scores: E(): 2e-84%2C 85.13 38d in 269 aa and to Yersinia pestis deor-family regulatory protein Ypo0831 SWALL:Q8ZHQ9 (EMBL:AJ414145) (258 aa) fasta scores: E(): 7.4e-37%2C 48 id in 250 aa gene gene2397 http://www.ncbi.nlm.nih.gov/gene/?term=YE2448 YE2449 YE2449 agaS agaS 2638092 2638526 + putative tagatose-6-phosphate ketose/aldose isomerase (fragment) Similar to Escherichia coli putative tagatose-6-phosphate ketose/aldose isomerase AgaS or b3136 SWALL:AGAS_ECOLI (SWALL:P42907) (384 aa) fasta scores: E(): 7.5e-45%2C 79.02 38d in 143 aa%2C and to Yersinia pestis putative phosphosugar isomerase Ypo0833 SWALL:Q8ZHQ7 (EMBL:AJ414145) (388 aa) fasta scores: E(): 8e-27%2C 53.14 id in 143 aa. This CDS has undergone a large deletion event removing the 5'end of the coding sequence pseudogene gene2398 http://www.ncbi.nlm.nih.gov/gene/?term=YE2449 YE2450 YE2450 agaY agaY 2638539 2638949 + tagatose-bisphosphate aldolase (fragment) Similar to Escherichia coli%2C and Escherichia coli O157:H7 tagatose-bisphosphate aldolase AgaY or Kba or b3137 or z4491 or ecs4017 SWALL:AGAY_ECOLI (SWALL:P42908) (286 aa) fasta scores: E(): 8.2e-45%2C 87.59 38d in 137 aa and to Yersinia pestis putative aldolase AgaY or Ypo0844 SWALL:Q8ZHP6 (EMBL:AJ414145) (284 aa) fasta scores: E(): 3e-28%2C 56.2 38d in 137 aa. This CDS has undergone a large deletion event removing the 3'end of the coding sequence pseudogene gene2399 http://www.ncbi.nlm.nih.gov/gene/?term=YE2450 YE2451 YE2451 YE2451 2639222 2639968 + putative lipoprotein Similar to Escherichia coli O157:H7 putative lipoprotein Ecs3738 SWALL:Q8X2T2 (EMBL:AP002563) (259 aa) fasta scores: E(): 4.3e-52%2C 64.4 38d in 236 aa and to Escherichia coli hypothetical lipoprotein YgeR precursor or b2865 SWALL:YGER_ECOLI (SWALL:Q46798) (251 aa) fasta scores: E(): 1.3e-51%2C 63.98 38d in 236 aa gene gene2400 http://www.ncbi.nlm.nih.gov/gene/?term=YE2451 YE2452 YE2452 YE2452 2640554 2640889 + transposase for insertion sequence element IS1665 Similar to the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.2e-51%2C 49.77 id in 440 aa%2C and Shigella flexneri IS4 S0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 1.2e-51%2C48.34 38d in 422 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences. gene gene2401 http://www.ncbi.nlm.nih.gov/gene/?term=YE2452 YE2454 YE2454 YE2454 2640954 2641592 - putative sugar-phosphate isomerase gene gene2402 http://www.ncbi.nlm.nih.gov/gene/?term=YE2454 YE2455 YE2455 YE2455 2641862 2642227 - hypothetical protein Weakly similar in parts to Bordetella bronchiseptica pertactin Prn SWALL:Q9ALQ0 (EMBL:AY007267) (256 aa) fasta scores: E(): 0.032%2C 35.21 38d in 71 aa gene gene2403 http://www.ncbi.nlm.nih.gov/gene/?term=YE2455 YE2457 YE2457 YE2457 2642538 2643197 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty1858 SWALL:Q8Z6C9 (EMBL:AL627271) (216 aa) fasta scores: E(): 7e-49%2C 56.33 38d in 213 aa and to Escherichia coli hypothetical protein YodA or b1973 SWALL:YODA_ECOLI (SWALL:P76344) (216 aa) fasta scores: E(): 5.2e-47%2C 54.33 id in 219 aa gene gene2404 http://www.ncbi.nlm.nih.gov/gene/?term=YE2457 YE2458 YE2458 YE2458 2643393 2643965 - conserved hypothetical protein gene gene2405 http://www.ncbi.nlm.nih.gov/gene/?term=YE2458 YE2459 YE2459 YE2459 2643965 2645335 - putative chlorohydrolase gene gene2406 http://www.ncbi.nlm.nih.gov/gene/?term=YE2459 YE2460 YE2460 hutC hutC 2645484 2646251 + putative GntR-family transcriptional regulatory protein gene gene2407 http://www.ncbi.nlm.nih.gov/gene/?term=YE2460 YE2461 YE2461 hutI hutI 2646387 2647607 + imidazolonepropionase gene gene2408 http://www.ncbi.nlm.nih.gov/gene/?term=YE2461 YE2462 YE2462 hutG hutG 2647604 2648413 + putative N-formylglutamate amidohydrolase gene gene2409 http://www.ncbi.nlm.nih.gov/gene/?term=YE2462 YE2463 YE2463 YE2463 2648536 2649618 - outer membrane porin protein Highly similar to many outermembrane porins including: Escherichia coli outer membrane porin protein NmpC precursor or Phma or b0553 SWALL:NMPC_ECOLI (SWALL:P21420) (365 aa) fasta scores: E(): 2.9e-74%2C 57.64 id in 373 aa%2C Yersinia pestis similar to ompf SWALL:Q9ZC71 (EMBL:AL031866) (315 aa) fasta scores: E(): 1e-90%2C 81.16 id in 292 aa and to Bacteriophage PA-2 outer membrane porin protein LC precursor SWALL:PORI_BPPA2 (SWALL:P07238) (365 aa) fasta scores: E(): 6e-75%2C 57.9 38d in 373 aa gene gene2410 http://www.ncbi.nlm.nih.gov/gene/?term=YE2463 YE2465 YE2465 astE astE 2650344 2651336 - succinylglutamate desuccinylase gene gene2411 http://www.ncbi.nlm.nih.gov/gene/?term=YE2465 YE2466 YE2466 astB astB 2651401 2652744 - succinylarginine dihydrolase gene gene2412 http://www.ncbi.nlm.nih.gov/gene/?term=YE2466 YE2467 YE2467 astD astD 2652787 2654253 - succinylglutamic semialdehyde dehydrogenase gene gene2413 http://www.ncbi.nlm.nih.gov/gene/?term=YE2467 YE2468 YE2468 astA astA 2654265 2655302 - arginine N-succinyltransferase gene gene2414 http://www.ncbi.nlm.nih.gov/gene/?term=YE2468 YE2469 YE2469 astC astC 2655360 2656604 - succinylornithine aminotransferase gene gene2415 http://www.ncbi.nlm.nih.gov/gene/?term=YE2469 YE2470 YE2470 YE2470 2657213 2658646 - putative GntR-family regulatory protein gene gene2416 http://www.ncbi.nlm.nih.gov/gene/?term=YE2470 YE2471 YE2471 YE2471 2658831 2660279 + putative cytochrome oxidase subunit Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioA or Pa3930 SWALL:O07440 (EMBL:Y10528) (488 aa) fasta scores: E(): 5.8e-155%2C 78.39 id in 486 aa%2C Salmonella typhimurium cytochrome Bd2 subunit I Stm0360 SWALL:Q8ZRG3 (EMBL:AE008712) (467 aa) fasta scores: E(): 4.2e-144%2C 77.22 38d in 461 aa and to Bacillus subtilis cytochrome D ubiquinol oxidase subunit I CydA SWALL:CYDA_BACSU (SWALL:P94364) (468 aa) fasta scores: E(): 1e-53%2C 36.54 38d in 446 aa gene gene2417 http://www.ncbi.nlm.nih.gov/gene/?term=YE2471 YE2472 YE2472 YE2472 2660282 2661289 + putative cytochrome oxidase subunit Similar to Pseudomonas aeruginosa cyanide insensitive terminal oxidase CioB or Pa3929 SWALL:O07441 (EMBL:Y10528) (335 aa) fasta scores: E(): 2.4e-99%2C 73.43 id in 335 aa%2C Salmonella typhimurium cytochrome Bd2 subunit II Stm0361 SWALL:Q8ZRG2 (EMBL:AE008712) (336 aa) fasta scores: E(): 5.8e-90%2C 68.15 38d in 336 aa%2C and to Bacillus subtilis cytochrome d ubiquinol oxidase subunit ii cydB SWALL:CYDB_BACSU (SWALL:P94365) (338 aa) fasta scores: E(): 2.9e-22%2C 26.76 38d in 340 aa gene gene2418 http://www.ncbi.nlm.nih.gov/gene/?term=YE2472 YE2473 YE2473 narX narX 2661522 2663303 + nitrate/nitrite sensor protein gene gene2419 http://www.ncbi.nlm.nih.gov/gene/?term=YE2473 YE2474 YE2474 YE2474 2663341 2664297 - putative LysR-family transcriptional regulatory protein Similar to Escherichia coli transcriptional regulator Cbl or b1987 SWALL:CBL_ECOLI (SWALL:Q47083) (316 aa) fasta scores: E(): 3.5e-83%2C 67.61 38d in 318 aa and to Klebsiella aerogenes transcriptional regulator Cbl SWALL:CBL_KLEAE (SWALL:Q08598) (316 aa) fasta scores: E(): 7.2e-83%2C 68.55 38d in 318 aa gene gene2420 http://www.ncbi.nlm.nih.gov/gene/?term=YE2474 YE2475 YE2475 YE2475 2664665 2665831 + putative membrane transport protein Similar to many putative membrane transport proteins including: Yersinia pestis putative sugar transport protein Ypo0798 SWALL:Q8ZHT6 (EMBL:AJ414144) (386 aa) fasta scores: E(): 6.8e-68%2C 53.88 38d in 373 aa%2CEscherichia coli protein precursor AraJ or b0396 SWALL:ARAJ_ECOLI (SWALL:P23910) (394 aa) fasta scores: E(): 2.8e-39%2C 32.56 38d in 390 aa and to Streptomyces lividans chloramphenicol resistance protein CmlR SWALL:CMLR_STRLI (SWALL:P31141) (392 aa) fasta scores: E(): 1.8e-32%2C 33.59 38d in 387 aa gene gene2421 http://www.ncbi.nlm.nih.gov/gene/?term=YE2475 YE2476 YE2476 YE2476 2666020 2666856 + conserved hypothetical protein Similar to several proteins involved in iron acquisition: Vibrio vulnificus vulnibactin utilization protein ViuB SWALL:VIUB_VIBVU (SWALL:Q56743) (271 aa) fasta scores: E(): 2.9e-29%2C 36.26 38d in 262 aa%2C and to Stigmatella aurantiaca MxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.3e-22%2C 31.93 38d in 263 aa gene gene2422 http://www.ncbi.nlm.nih.gov/gene/?term=YE2476 YE2477 YE2477 chaA chaA 2667076 2668185 + calcium/proton antiporter gene gene2423 http://www.ncbi.nlm.nih.gov/gene/?term=YE2477 YE2478 YE2478 phoH phoH 2668285 2669073 - putative phosphate starvation-inducible protein gene gene2424 http://www.ncbi.nlm.nih.gov/gene/?term=YE2478 YE2479 YE2479 YE2479 2669141 2669461 - conserved hypothetical protein gene gene2425 http://www.ncbi.nlm.nih.gov/gene/?term=YE2479 YE2480 YE2480 YE2480 2669606 2670313 - putative acetyltransferase Similar to Yersinia pestis hypothetical 27.4 kDa protein Ypo1955 SWALL:Q9ZC61 (EMBL:AL031866) (299 aa) fasta scores: E(): 2.2e-82%2C 80.17 38d in 232 aa.Note the extended N-terminus of the Y. pestis protein. It appears that Y. pestis has an extra segment of sequence at this point. This may have been an insertion in Y. pestis or a deletion from Y. enterocolitica. This is true for Y. pestis strains CO92 and KIM5. Also similar to Brucella suis 1330 acetyltransferase%2C GnaT family Bra0091 SWALL:AAN33301 (EMBL:AE014513) (225 aa) fasta scores: E(): 1.9e-40%2C 45.45 38d in 220 aa and to Brucella melitensis ribosomal-protein-serine acetyltransferase Bmeii0002 SWALL:Q8YE16 (EMBL:AE009639) (242 aa) fasta scores: E(): 2.8e-40%2C 44.69 38d in 226 aa gene gene2426 http://www.ncbi.nlm.nih.gov/gene/?term=YE2480 YE2481 YE2481 hmsS hmsS 2670529 2670996 - haemin storage system%2C HmsS protein gene gene2427 http://www.ncbi.nlm.nih.gov/gene/?term=YE2481 YE2482 YE2482 hmsR hmsR 2670993 2672327 - haemin storage system%2C HmsR protein gene gene2428 http://www.ncbi.nlm.nih.gov/gene/?term=YE2482 YE2483 YE2483 hmsF hmsF 2672317 2674230 - haemin storage system%2C HmsF protein gene gene2429 http://www.ncbi.nlm.nih.gov/gene/?term=YE2483 YE2484 YE2484 hmsH hmsH 2674353 2676821 - haemin storage system%2C HmsH protein gene gene2430 http://www.ncbi.nlm.nih.gov/gene/?term=YE2484 YE2485 YE2485 YE2485 2677500 2678717 - putative peptidase gene gene2431 http://www.ncbi.nlm.nih.gov/gene/?term=YE2485 YE2486 YE2486 YE2486 2678768 2679535 - putative ferric iron reductase gene gene2432 http://www.ncbi.nlm.nih.gov/gene/?term=YE2486 YE2487 YE2487 YE2487 2679693 2680319 - hypothetical protein Similar to several Eukaryotic and Prokaryotic proteins including: Mus musculus hypothetical protein Mgc2744 SWALL:Q99JS9 (EMBL:BC005711) (412 aa) fasta scores: E(): 1.4e-08%2C 31.12 38d in 196 aa and to Pyrococcus furiosus partial alanyl-tRNA synthetase matches COOH terminus Pf0086 SWALL:AAL80210 (EMBL:AE010135) (214 aa) fasta scores: E(): 1.5e-08%2C 28.78 38d in 205 aa gene gene2433 http://www.ncbi.nlm.nih.gov/gene/?term=YE2487 YE2488 YE2488 YE2488 2680409 2681341 + putative Lys-family transcriptional regulatory protein Similar to many Lys-family transcriptioanl regulators including: Klebsiella pneumoniae probable transcriptional regulator LtrA SWALL:LTRA_KLEPN (SWALL:P52689) (309 aa) fasta scores: E(): 1.2e-65%2C 58.36 id in 293 aa%2C and to Vibrio cholerae transcriptional regulator%2C lysr family vca0889 SWALL:Q9KL59 (EMBL:AE004416) (312 aa) fasta scores: E(): 3.4e-47%2C44.14 38d in 299 aa gene gene2434 http://www.ncbi.nlm.nih.gov/gene/?term=YE2488 YE2489 YE2489 tehB tehB 2681392 2682261 - putative tellurite resistance protein gene gene2435 http://www.ncbi.nlm.nih.gov/gene/?term=YE2489 YE2490 YE2490 YE2490 2682406 2682720 - putative cytochrome Similar to Helicobacter pylori J99 cytochrome C-553 precursor jhp1148 SWALL:C553_HELPJ (SWALL:Q9ZJZ9) (96 aa) fasta scores: E(): 0.0035%2C 34.69 38d in 98 aa and to Yersinia pestis putative cytochrome Ypo1948 SWALL:Q8ZF20 (EMBL:AJ414150) (103 aa) fasta scores: E(): 1.7e-28%2C 79.8 id in 104 aa gene gene2436 http://www.ncbi.nlm.nih.gov/gene/?term=YE2490 YE2491 YE2491 YE2491 2682720 2683169 - putative thioredoxin gene gene2437 http://www.ncbi.nlm.nih.gov/gene/?term=YE2491 YE2492 YE2492 YE2492 2683198 2683911 - ABC transporter%2C ATP-binding protein gene gene2438 http://www.ncbi.nlm.nih.gov/gene/?term=YE2492 YE2493 YE2493 YE2493 2683915 2685036 - putative membrane protein gene gene2439 http://www.ncbi.nlm.nih.gov/gene/?term=YE2493 YE2494 YE2494 YE2494 2685062 2686354 - putative membrane protein gene gene2440 http://www.ncbi.nlm.nih.gov/gene/?term=YE2494 YE2495 YE2495 YE2495 2686357 2687760 - putative membrane protein gene gene2441 http://www.ncbi.nlm.nih.gov/gene/?term=YE2495 YE2496 YE2496 YE2496 2687896 2688423 - putative exported protein gene gene2442 http://www.ncbi.nlm.nih.gov/gene/?term=YE2496 YE2497 YE2497 YE2497 2688504 2690441 - putative membrane protein gene gene2443 http://www.ncbi.nlm.nih.gov/gene/?term=YE2497 YE2498 YE2498 YE2498 2690615 2691133 + hypothetical protein no significant database hits gene gene2444 http://www.ncbi.nlm.nih.gov/gene/?term=YE2498 YE2499 YE2499 YE2499 2691250 2692890 - putative membrane protein gene gene2445 http://www.ncbi.nlm.nih.gov/gene/?term=YE2499 YE2500 YE2500 YE2500 2693001 2694008 - putative glutaminase gene gene2446 http://www.ncbi.nlm.nih.gov/gene/?term=YE2500 YE2501 YE2501 YE2501 2694575 2695354 - conserved hypothetical protein gene gene2447 http://www.ncbi.nlm.nih.gov/gene/?term=YE2501 YE2502 YE2502 YE2502 2695357 2695980 - putative class II aldolase-family protein gene gene2448 http://www.ncbi.nlm.nih.gov/gene/?term=YE2502 YE2503 YE2503 YE2503 2695977 2697284 - conserved hypothetical protein gene gene2449 http://www.ncbi.nlm.nih.gov/gene/?term=YE2503 YE2504 YE2504 YE2504 2697592 2698371 + probable deoR-family transcriptional regulatory protein gene gene2450 http://www.ncbi.nlm.nih.gov/gene/?term=YE2504 YE2505 YE2505 YE2505 2698616 2700292 + two-component system%2C sensor kinase Similar to many two-component sensor kinases including: Escherichia coli%2C and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 7.6e-117%2C 56.76 38d in 532 aa and to Salmonella typhi two-component sensor kinase DcuS or Sty4502 SWALL:Q8Z1N4 (EMBL:AL627282) (543 aa) fasta scores: E(): 1.1e-119%2C59.39 38d in 527 aa. The two-component sensor regulator partner appears to be YE2506. gene gene2451 http://www.ncbi.nlm.nih.gov/gene/?term=YE2505 YE2506 YE2506 YE2506 2700285 2701004 + two-component system%2C sensor regulator Similar to many two-component sensor regulators including: Escherichia coli%2C and Escherichia coli O157:H7 transcriptional regulatory protein DcuR or b4124 or z5726 or ecs5106 SWALL:DCUR_ECOLI (SWALL:P39271) (239 aa) fasta scores: E(): 5.7e-52%2C 56.06 38d in 239 aa and to Salmonella typhimurium response regulator in two-component regulator of anaerobic fumarate respiration DcuR or Stm4303 SWALL:Q8ZKD9 (EMBL:AE008902) (239 aa) fasta scores: E(): 3.1e-52%2C 56.06 38d in 239 aa. The two-component sensor kinase partner appears to be YE2505. gene gene2452 http://www.ncbi.nlm.nih.gov/gene/?term=YE2506 YE2507 YE2507 YE2507 2701116 2702474 - putative citrate/sodium-family symporter Similar to many membrane transport proteins including: Streptococcus bovis L-malate permease MalP SWALL:Q53787 (EMBL:U35658) (441 aa) fasta scores: E(): 1.3e-78%2C 49.64 38d in 419 aa and to Klebsiella pneumoniae citrate-sodium symport CitS SWALL:CITN_KLEPN (SWALL:P31602) (446 aa) fasta scores: E(): 8e-38%2C 28.92 id in 439 aa gene gene2453 http://www.ncbi.nlm.nih.gov/gene/?term=YE2507 YE2508 YE2508 ansP ansP 2703582 2705087 + L-asparagine permease gene gene2454 http://www.ncbi.nlm.nih.gov/gene/?term=YE2508 YE2509 YE2509 YE2509 2705236 2705613 - conserved hypothetical protein Similar to many including: Brucella melitensis putative uroporphyrin-III C-methyltransferase bmeii0787 SWALL:Q8YBU9 (EMBL:AE009713) (116 aa) fasta scores: E(): 1.5e-15%2C 42.47 38d in 113 aa and to Rhizobium leguminosarum hypothetical 13.6 kDa protein SWALL:Q93EB8 (EMBL:AF361470) (115 aa) fasta scores: E(): 5e-14%2C 43.51 id in 108 aa gene gene2455 http://www.ncbi.nlm.nih.gov/gene/?term=YE2509 YE2510 YE2510 YE2510 2705622 2705873 - hypothetical protein Weakly similar to the C-terminus of several proteins of undefined function including: Lactococcus lactis unknown protein YuiD or ll2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 7.2e-13%2C 50.7 id in 71 aa and to Rhizobium meliloti hypothetical protein R02289 or smc01545 SWALL:Q92K29 (EMBL:AL591790) (114 aa) fasta scores: E(): 0.029%2C 30.76 38d in 65 aa gene gene2456 http://www.ncbi.nlm.nih.gov/gene/?term=YE2510 YE2511 YE2511 YE2511 2706166 2707182 + putative exported protein Similar to several proteins of undefined function including: Listeria monocytogenes hypothetical protein Lmo0520 SWALL:Q8Y9K7 (EMBL:AL591975) (334 aa) fasta scores: E(): 7.6e-15%2C 23.78 38d in 328 aa. Also similar to the N-terminus of several regulatory proteins including: Caldicellulosiruptor sp. putative xylose repressor XylR SWALL:XYLR_CALSR (SWALL:P40981) (399 aa) fasta scores: E(): 3.5e-07%2C 26.25 38d in 278 aa gene gene2457 http://www.ncbi.nlm.nih.gov/gene/?term=YE2511 YE2512 YE2512 YE2512 2707420 2708592 + putative inner membrane protein Similar to many membrane proteins including: Yersinia pestis putative membrane protein Ypo1221 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 1.2e-57%2C 43.75 38d in 368 aa and to Rhizobium loti transmembrane transport protein Mlr3825 SWALL:Q98FD4 (EMBL:AP003002) (391 aa) fasta scores: E(): 2.1e-36%2C 33.6 id in 369 aa gene gene2458 http://www.ncbi.nlm.nih.gov/gene/?term=YE2512 YE2513 YE2513 YE2513 2708773 2709585 + putative hydrolase Highyl similar to several including: Salmonella typhimurium putative hydrolase Stm0867 SWALL:Q8ZQK7 (EMBL:AE008736) (271 aa) fasta scores: E(): 1.1e-54%2C53.53 38d in 269 aa and to Escherichia coli protein YbjI or b0844 SWALL:YBJI_ECOLI (SWALL:P75809) (271 aa) fasta scores: E(): 1.2e-54%2C 54.64 38d in 269 aa gene gene2459 http://www.ncbi.nlm.nih.gov/gene/?term=YE2513 YE2514 YE2514 yecC yecC 2709719 2710474 - putative amino-acid ABC transporter (ATP-binding protein) gene gene2460 http://www.ncbi.nlm.nih.gov/gene/?term=YE2514 YE2515 YE2515 yecS yecS 2710477 2711139 - putative amino-acid ABC transporter (permease) gene gene2461 http://www.ncbi.nlm.nih.gov/gene/?term=YE2515 YE2516 YE2516 fliY fliY 2711139 2711939 - putative cystine-binding periplasmic protein gene gene2462 http://www.ncbi.nlm.nih.gov/gene/?term=YE2516 YE2517 YE2517 YedO YedO 2712058 2713050 - putative deaminase gene gene2463 http://www.ncbi.nlm.nih.gov/gene/?term=YE2517 YE2518 YE2518 fliZ fliZ 2713429 2713938 - putative alternative sigma factor regulatory protein gene gene2464 http://www.ncbi.nlm.nih.gov/gene/?term=YE2518 YE2519 YE2519 fliA fliA 2713994 2714716 - RNA polymerase sigma factor for flagellar operon gene gene2465 http://www.ncbi.nlm.nih.gov/gene/?term=YE2519 YE2520 YE2520 fliB fliB 2714907 2716112 - flagellin lysine-N-methylase Highly similar to Salmonella typhimurium lysine-N-methylase FliB or Stm1958 SWALL:FLIB_SALTY (SWALL:Q56106) (401 aa) fasta scores: E(): 2.1e-53%2C 36.9 id in 401 aa and to Salmonella cholerae-suis lysine-N-methylase FliB or FliU SWALL:FLIB_SALCH (SWALL:Q9KJV4) (401 aa) fasta scores: E(): 2.8e-53%2C 36.65 id in 401 aa gene gene2466 http://www.ncbi.nlm.nih.gov/gene/?term=YE2520 YE2521 YE2521 fliC2 fliC2 2716260 2717405 - flagellin Similar to the products of many genes encoding flagellin: Salmonella budapest flagellin FliC SWALL:FLIC_SALBU (SWALL:Q06969) (504 aa) fasta scores: E(): 7.4e-35%2C 45.25 38d in 506 aa and to Pseudomonas aeruginosa flagellin fliC SWALL:O86265 (EMBL:L81146) (387 aa) fasta scores: E(): 5.9e-42%2C 43.4 38d in 394 aa. The product of this CDS is also highly similar to the product of the genes YE2523 83.812 38d in 383 aa and YE2522 83.727 38d in 381 aa. gene gene2467 http://www.ncbi.nlm.nih.gov/gene/?term=YE2521 YE2522 YE2522 fliC fliC 2717595 2718695 - thermoregulated motility protein The product of this CDS is also highly similar to the product of the genes YE2521 83.727 38d in 381 aa and YE2523 92.683 38d in 369 aa. /fasta_file%3Dfasta gene gene2468 http://www.ncbi.nlm.nih.gov/gene/?term=YE2522 YE2523 YE2523 fliC3 fliC3 2718885 2719994 - flagellin Similar to Proteus mirabilis flagellin 2 FliC2 SWALL:FLC2_PROMI (SWALL:P42273) (367 aa) fasta scores: E(): 1.2e-53%2C 55.2 38d in 375 aa%2C Yersinia enterocolitica thermoregulated motility protein SWALL:Q56912 (EMBL:L33468) (364 aa) fasta scores: E(): 9e-96%2C 88.34 38d in 369 aa and to Salmonella oranienberg flagellin FliC SWALL:FLIC_SALON (SWALL:Q06974) (507 aa) fasta scores: E(): 1.8e-34%2C 44.99 38d in 509 aa. The product of this CDS is also highly similar to the product of the genes YE2521 83.812 38d in 383 aa and YE2522 92.683 0d in 369 aa. gene gene2469 http://www.ncbi.nlm.nih.gov/gene/?term=YE2523 YE2524 YE2524 fliD fliD 2720258 2721658 + flagellar hook-associated protein 2 gene gene2470 http://www.ncbi.nlm.nih.gov/gene/?term=YE2524 YE2525 YE2525 fliS fliS 2721669 2722067 + flagellar protein FliS gene gene2471 http://www.ncbi.nlm.nih.gov/gene/?term=YE2525 YE2526 YE2526 fliT fliT 2722079 2722441 + flagella protein gene gene2472 http://www.ncbi.nlm.nih.gov/gene/?term=YE2526 YE2527 YE2527 YE2527 2722716 2723585 + putative AraC-family transcriptional regulatory protein gene gene2473 http://www.ncbi.nlm.nih.gov/gene/?term=YE2527 YE2528 YE2528 YE2528 2723915 2726869 + putative chemotaxis protein Similar to Vibrio cholerae chemotactic transducer-related protein Vca0895 SWALL:Q9KL53 (EMBL:AE004417) (981 aa) fasta scores: E(): 2.7e-81%2C37.07 38d in 990 aa. Similar in the N-terminus to Rhizobium meliloti adenylate cyclase 1 Cya1 or CyaA or r00259 or smc00339 SWALL:CYA1_RHIME (SWALL:P19485) (665 aa) fasta scores: E(): 2.5e-11%2C 22.62 38d in 411 aa gene gene2474 http://www.ncbi.nlm.nih.gov/gene/?term=YE2528 YE2529 YE2529 YE2529 2726956 2727558 + putative glycosidase gene gene2475 http://www.ncbi.nlm.nih.gov/gene/?term=YE2529 YE2530 YE2530 YE2530 2727781 2727957 + putative DNA-damage-inducible protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 DNA-damage-inducible protein I DinI or b1061 or z1698 or ecs1439 SWALL:DINI_ECOLI (SWALL:Q47143) (81 aa) fasta scores: E(): 1.6e-07%2C 54.54 38d in 55 aa and Serratia marcescens DNA-damage-inducible protein I DinI SWALL:DINI_SERMA (SWALL:Q9S3S0) (79 aa) fasta scores: E(): 2.3e-10%2C 58.92 38d in 56 aa. Notice the differing N-termini of the other database hits gene gene2476 http://www.ncbi.nlm.nih.gov/gene/?term=YE2530 YE2531 YE2531 YE2531 2728425 2729084 + hypothetical protein no significant database hits gene gene2477 http://www.ncbi.nlm.nih.gov/gene/?term=YE2531 YE2533 YE2533 YE2533 2729612 2729827 - hypothetical protein doubtful CDS with no significant database hits gene gene2478 http://www.ncbi.nlm.nih.gov/gene/?term=YE2533 YE2535 YE2535 tnpB tnpB 2730038 2730280 + IS1329 transposase B (pseudogene) Similar to Yersinia enterocolitica IS1329 transposase B Trp1329B SWALL:Q9X9I3 (EMBL:AJ132945) (249 aa) fasta scores: E(): 1.2e-50%2C 88.23 38d in 153 aa and to Erwinia amylovora TnpA SWALL:Q9F7Z5 (EMBL:AF264951) (269 aa) fasta scores: E(): 9.9e-22%2C 47.97 38d in 148 aa. Note this CDS contains multiple frameshifts and point mutations pseudogene gene2479 http://www.ncbi.nlm.nih.gov/gene/?term=YE2535 YE2536 YE2536 fliE fliE 2730477 2730788 - flagellar hook-basal body complex protein FliE gene gene2480 http://www.ncbi.nlm.nih.gov/gene/?term=YE2536 YE2537 YE2537 fliF fliF 2731117 2732817 + flagellar M-ring protein gene gene2481 http://www.ncbi.nlm.nih.gov/gene/?term=YE2537 YE2538 YE2538 fliG fliG 2732814 2733806 + flagellar motor switch protein FliG gene gene2482 http://www.ncbi.nlm.nih.gov/gene/?term=YE2538 YE2539 YE2539 fliH fliH 2733799 2734521 + flagellar assembly protein Highly similar to Escherichia coli flagellar assembly protein FliH or fla bIII or fla aII.3 or b1940 SWALL:FLIH_ECOLI (SWALL:P31068) (228 aa) fasta scores: E(): 1.7e-44%2C 57.74 38d in 239 aa and to Yersinia pestis flagellar assembly protein FliH or ypo1828 SWALL:Q8ZF88 (EMBL:AJ414150) (238 aa) fasta scores: E(): 1.3e-74%2C84.16 38d in 240 aa gene gene2483 http://www.ncbi.nlm.nih.gov/gene/?term=YE2539 YE2540 YE2540 fliI fliI 2734554 2735885 + flagellum-specific ATP synthase gene gene2484 http://www.ncbi.nlm.nih.gov/gene/?term=YE2540 YE2541 YE2541 fliJ fliJ 2735975 2736421 + flagellar protein FliJ gene gene2485 http://www.ncbi.nlm.nih.gov/gene/?term=YE2541 YE2542 YE2542 fliK fliK 2736550 2737776 + flagellar hook-length control protein FliK gene gene2486 http://www.ncbi.nlm.nih.gov/gene/?term=YE2542 YE2543 YE2543 fliL fliL 2737967 2738437 + flagellar protein FliL gene gene2487 http://www.ncbi.nlm.nih.gov/gene/?term=YE2543 YE2544 YE2544 fliM fliM 2738443 2739447 + flagellar motor switch protein FliM gene gene2488 http://www.ncbi.nlm.nih.gov/gene/?term=YE2544 YE2545 YE2545 fliN fliN 2739440 2739856 + flagellar motor switch protein FliN gene gene2489 http://www.ncbi.nlm.nih.gov/gene/?term=YE2545 YE2546 YE2546 fliO fliO 2740030 2740440 + flagellar protein FliO gene gene2490 http://www.ncbi.nlm.nih.gov/gene/?term=YE2546 YE2547 YE2547 fliP fliP 2740503 2741189 + flagellar biosynthetic protein FliP gene gene2491 http://www.ncbi.nlm.nih.gov/gene/?term=YE2547 YE2548 YE2548 fliQ fliQ 2741201 2741470 + flagellar biosynthetic protein FliQ gene gene2492 http://www.ncbi.nlm.nih.gov/gene/?term=YE2548 YE2549 YE2549 fliR fliR 2741473 2742255 + flagellar biosynthetic protein FliR gene gene2493 http://www.ncbi.nlm.nih.gov/gene/?term=YE2549 YE2550 YE2550 flgL flgL 2742771 2743751 - flagellar hook-associated protein 3 gene gene2494 http://www.ncbi.nlm.nih.gov/gene/?term=YE2550 YE2551 YE2551 flgK flgK 2743865 2745529 - flagellar hook-associated protein 1 gene gene2495 http://www.ncbi.nlm.nih.gov/gene/?term=YE2551 YE2552 YE2552 flgJ flgJ 2745852 2746775 - flagellar protein FlgJ gene gene2496 http://www.ncbi.nlm.nih.gov/gene/?term=YE2552 YE2553 YE2553 flgI flgI 2746814 2747890 - flagellar P-ring protein precursor gene gene2497 http://www.ncbi.nlm.nih.gov/gene/?term=YE2553 YE2554 YE2554 flgH flgH 2747947 2748630 - flagellar L-ring protein precursor gene gene2498 http://www.ncbi.nlm.nih.gov/gene/?term=YE2554 YE2555 YE2555 flgG flgG 2748755 2749408 - flagellar basal-body rod protein FlgG gene gene2499 http://www.ncbi.nlm.nih.gov/gene/?term=YE2555 YE2556 YE2556 flgF flgF 2749564 2750319 - flagellar basal-body rod protein FlgF gene gene2500 http://www.ncbi.nlm.nih.gov/gene/?term=YE2556 YE2557 YE2557 flgE flgE 2750341 2751600 - flagellar hook protein FlgE gene gene2501 http://www.ncbi.nlm.nih.gov/gene/?term=YE2557 YE2558 YE2558 flgD flgD 2751944 2752519 - basal-body rod modification protein FlgD gene gene2502 http://www.ncbi.nlm.nih.gov/gene/?term=YE2558 YE2559 YE2559 flgC flgC 2752646 2753050 - flagellar basal-body rod protein FlgC gene gene2503 http://www.ncbi.nlm.nih.gov/gene/?term=YE2559 YE2560 YE2560 flgB flgB 2753056 2753469 - flagellar basal-body rod protein FlgB gene gene2504 http://www.ncbi.nlm.nih.gov/gene/?term=YE2560 YE2561 YE2561 flgA flgA 2753731 2754333 + flagella basal body P-ring formation protein FlgA gene gene2505 http://www.ncbi.nlm.nih.gov/gene/?term=YE2561 YE2562 YE2562 flgM flgM 2754540 2754797 + negative regulator of flagellin synthesis gene gene2506 http://www.ncbi.nlm.nih.gov/gene/?term=YE2562 YE2563 YE2563 flgN flgN 2754849 2755289 + flagella synthesis protein FlgN gene gene2507 http://www.ncbi.nlm.nih.gov/gene/?term=YE2563 YE2564 YE2564 invA invA 2755292 2757799 - invasin gene gene2508 http://www.ncbi.nlm.nih.gov/gene/?term=YE2564 YE2565 YE2565 flhE flhE 2758310 2758732 - flagellar protein FlhE precursor gene gene2509 http://www.ncbi.nlm.nih.gov/gene/?term=YE2565 YE2566 YE2566 flhA flhA 2758732 2760810 - flagellar biosynthesis protein FlhA gene gene2510 http://www.ncbi.nlm.nih.gov/gene/?term=YE2566 YE2567 YE2567 flhB flhB 2760810 2761961 - flagellar biosynthetic protein FlhB gene gene2511 http://www.ncbi.nlm.nih.gov/gene/?term=YE2567 YE2568 YE2568 hreP hreP 2762376 2764025 + subtilisin/kexin-like protease Previously sequenced as Yersinia enterocolitica subtilisin/kexin-like protease HreP SWALL:Q93P02 (EMBL:AF354753) (549 aa) fasta scores: E(): 0%2C 100 38d in 549 aa. Also highly similar to Anabaena sp. calcium-dependent protease precursor PrcA or Alr1381 SWALL:PRCA_ANASP (SWALL:Q59149) (662 aa) fasta scores: E(): 1e-90%2C 47.45 38d in 550 aa gene gene2512 http://www.ncbi.nlm.nih.gov/gene/?term=YE2568 YE2569 YE2569 cheZ cheZ 2764110 2764754 - chemotaxis protein CheZ gene gene2513 http://www.ncbi.nlm.nih.gov/gene/?term=YE2569 YE2570 YE2570 cheY cheY 2764764 2765153 - chemotaxis protein CheY gene gene2514 http://www.ncbi.nlm.nih.gov/gene/?term=YE2570 YE2571 YE2571 cheB cheB 2765345 2766394 - protein-glutamate methylesterase gene gene2515 http://www.ncbi.nlm.nih.gov/gene/?term=YE2571 YE2572 YE2572 cheR cheR 2766394 2767221 - chemotaxis protein methyltransferase gene gene2516 http://www.ncbi.nlm.nih.gov/gene/?term=YE2572 YE2573 YE2573 YE2573 2767283 2768920 - methyl-accepting chemotaxis protein gene gene2517 http://www.ncbi.nlm.nih.gov/gene/?term=YE2573 YE2575 YE2575 cheD cheD 2769105 2770778 - methyl-accepting chemotaxis protein gene gene2518 http://www.ncbi.nlm.nih.gov/gene/?term=YE2575 YE2576 YE2576 cheW cheW 2771060 2771557 - chemotaxis protein CheW gene gene2519 http://www.ncbi.nlm.nih.gov/gene/?term=YE2576 YE2577 YE2577 cheA cheA 2771738 2773792 - chemotaxis protein CheA gene gene2520 http://www.ncbi.nlm.nih.gov/gene/?term=YE2577 YE2578 YE2578 motB motB 2773803 2775047 - chemotaxis MotB protein gene gene2521 http://www.ncbi.nlm.nih.gov/gene/?term=YE2578 YE2579 YE2579 motA motA 2775044 2775931 - chemotaxis MotA protein gene gene2522 http://www.ncbi.nlm.nih.gov/gene/?term=YE2579 YE2580 YE2580 flhC flhC 2776069 2776650 - flagellum biosynthesis transcription activator gene gene2523 http://www.ncbi.nlm.nih.gov/gene/?term=YE2580 YE2581 YE2581 flhD flhD 2776654 2777013 - flagellar transcriptional activator Previously sequenced as Yersinia enterocolitica flagellar transcriptional activator FlhD SWALL:FLHD_YEREN (SWALL:O86046) (119 aa) fasta scores: E(): 2.3e-45%2C 100 id in 119 aa. Also highly similar to Serratia marcescens flagellar transcriptional activator FlhD SWALL:FLHD_SERMA (SWALL:O85806) (119 aa) fasta scores: E(): 4.6e-37%2C 85.71 id in 119 aa gene gene2524 http://www.ncbi.nlm.nih.gov/gene/?term=YE2581 YE2583 YE2583 YE2583 2778028 2778447 + putative universal stress protein Similar to many including: Yersinia pestis universal stress protein a UspA or Ypo3970 SWALL:Q8ZA49 (EMBL:AJ414160) (148 aa) fasta scores: E(): 4.3e-15%2C39.28 38d in 140 aa%2C Escherichia coli O157:H7 putative regulator YecG or z2948 or ecs2603 SWALL:Q8X560 (EMBL:AE005411) (142 aa) fasta scores: E(): 9.2e-29%2C55.39 38d in 139 aa and to Escherichia coli hypothetical protein YecG or b1895 SWALL:YECG_ECOLI (SWALL:P46888) (142 aa) fasta scores: E(): 2.7e-28%2C 54.67 38d in 139 aa gene gene2525 http://www.ncbi.nlm.nih.gov/gene/?term=YE2583 YE2584 YE2584 YE2584 2778611 2779645 + putative oxidoreductase Similar to many putative oxidoreductases including: Escherichia coli putative NADP-dependent oxidoreductase YncB or b1449 SWALL:YNCB_ECOLI (SWALL:P76113) (353 aa) fasta scores: E(): 1.6e-92%2C 68.89 38d in 344 aaand to Salmonella typhi putative NADP-dependent oxidoreductase Sty1476 SWALL:Q8Z742 (EMBL:AL627270) (345 aa) fasta scores: E(): 2.3e-89%2C 66.86 38d in 344 aa gene gene2526 http://www.ncbi.nlm.nih.gov/gene/?term=YE2584 YE2585 YE2585 mgtB mgtB 2779706 2782324 - Mg(2+) transport ATPase protein B gene gene2527 http://www.ncbi.nlm.nih.gov/gene/?term=YE2585 YE2586 YE2586 mgtC mgtC 2782625 2783335 - Mg(2+) transport ATPase protein C gene gene2528 http://www.ncbi.nlm.nih.gov/gene/?term=YE2586 YE2586A YE2586A YE2586A 2783887 2784132 + putative CoA transferase family protein (remnant) only remnants left due to deletion events pseudogene gene2529 http://www.ncbi.nlm.nih.gov/gene/?term=YE2586A YE2588 YE2588 YE2588 2784461 2786200 + putative methyl-accepting chemotaxis protein Similar to many chemotaxis proteins incuding: Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 1.5e-94%2C 59.18 38d in 517 aa and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM or Stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 3.3e-66%2C 45.76 38d in 566 aa gene gene2530 http://www.ncbi.nlm.nih.gov/gene/?term=YE2588 YE2589 YE2589 YE2589 2786333 2786524 - conserved hypothetical protein gene gene2531 http://www.ncbi.nlm.nih.gov/gene/?term=YE2589 YE2590 YE2590 cspC2 cspC2 2786778 2786990 - cold shock-like protein CspC2 Similar to Escherichia coli%2C Escherichia coli O157:H7%2C Salmonella typhimurium%2C and Salmonella typhi cold shock-like protein CspC cspC or msmB or b1823 or z2868 or ecs2533 or stm1837 or sty1967 SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 1.6e-21%2C 84.84 id in 66 aa%2C and to Yersinia pestis cold shock protein ypo1655 SWALL:Q8ZFN9 (EMBL:AJ414149) (70 aa) fasta scores: E(): 1.7e-27%2C 100 38d in 70 aa gene gene2532 http://www.ncbi.nlm.nih.gov/gene/?term=YE2590 YE2591 YE2591 lacI lacI 2787472 2788506 + lactose operon repressor gene gene2533 http://www.ncbi.nlm.nih.gov/gene/?term=YE2591 YE2592 YE2592 lacZ lacZ 2788683 2791835 + beta-galactosidase gene gene2534 http://www.ncbi.nlm.nih.gov/gene/?term=YE2592 YE2594 YE2594 YE2594 2792040 2792375 - transposase for insertion sequence element IS1665 Similar to the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 7.1e-54%2C 88.59 id in 149 aa%2C and to Shigella flexneri IS4 S0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 7.1e-54%2C 88.59 38d in 149 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences. gene gene2535 http://www.ncbi.nlm.nih.gov/gene/?term=YE2594 YE2595 YE2595 YE2595 2793089 2794099 + probable Zinc-binding dehydrogenase gene gene2536 http://www.ncbi.nlm.nih.gov/gene/?term=YE2595 YE2596 YE2596 ylaC ylaC 2794337 2794870 + putative membrane protein gene gene2537 http://www.ncbi.nlm.nih.gov/gene/?term=YE2596 YE2597 YE2597 YE2597 2795126 2795584 + AsnC-family transcriptional regulatory protein gene gene2538 http://www.ncbi.nlm.nih.gov/gene/?term=YE2597 YE2598 YE2598 YE2598 2795739 2796566 + conserved hypothetical protein gene gene2539 http://www.ncbi.nlm.nih.gov/gene/?term=YE2598 YE2599 YE2599 YE2599 2796772 2796984 + conserved hypothetical protein gene gene2540 http://www.ncbi.nlm.nih.gov/gene/?term=YE2599 YE2600 YE2600 YE2600 2797251 2798576 - probable histidine acid phosphatase gene gene2541 http://www.ncbi.nlm.nih.gov/gene/?term=YE2600 YE2601 YE2601 glgC2 glgC2 2798907 2800184 + glucose-1-phosphate adenylyltransferase Similar to Escherichia coli%2C and Escherichia coli O157:H7 glucose-1-phosphate adenylyltransferase GlgC or b3430 or z4792 or ecs4275 SWALL:GLGC_ECOLI (SWALL:P00584) (430 aa) fasta scores: E(): 1.4e-136%2C 77.98 38d in 418 aa%2CSalmonella typhimurium glucose-1-phosphate adenylyltransferase GlgC or Stm3536 SWALL:GLGC_SALTY (SWALL:P05415) (431 aa) fasta scores: E(): 1.3e-135%2C78.46 38d in 418 aa and Yersinia pestis glucose-1-phosphate adenylyltransferase GlgC or Ypo3940 SWALL:Q8ZA77 (EMBL:AJ414159) (476 aa) fasta scores: E(): 6.6e-134%2C 76.84 38d in 406 aa. Also highly similar to YE4011%2C glgcC%2C 77.590 38dentity in 415 aa.This CDS appears to be a paralogue of YE4011 gene gene2542 http://www.ncbi.nlm.nih.gov/gene/?term=YE2601 YE2602 YE2602 YE2602 2800444 2800956 - putative fimbrial chaperone Similar to Yersinia pestis putative fimbrial chaperone Ypo0303 SWALL:Q8ZJ26 (EMBL:AJ414142) (247 aa) fasta scores: E(): 4.5e-50%2C 81.17 38d in 170 aa and to Salmonella typhimurium putative fimbrial chaparone protein StjC or Stm4573 SWALL:Q8ZJV4 (EMBL:AE008915) (235 aa) fasta scores: E(): 5.2e-14%2C 34.1 38d in 173 aa. This gene is a possible gene fragment gene gene2543 http://www.ncbi.nlm.nih.gov/gene/?term=YE2602 YE2603 YE2603 YE2603 2801295 2802812 + putative sugar kinase Similar to many kinases including: Pasteurella multocida probable L-xylulose kinase Lyx or Pm1247 SWALL:LYXK_PASMU (SWALL:P57928) (483 aa) fasta scores: E(): 4e-44%2C 29.97 38d in 487 aa%2C Lactobacillus pentosus xylulose kinase XylB SWALL:XYLB_LACPE (SWALL:P21939) (501 aa) fasta scores: E(): 1.1e-41%2C 30.28 38d in 492 aa and Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or Sgbk or hi1027 SWALL:LYXK_HAEIN (SWALL:P44991) (485 aa) fasta scores: E(): 1.1e-40%2C 29.89 38d in 495 aa gene gene2544 http://www.ncbi.nlm.nih.gov/gene/?term=YE2603 YE2604 YE2604 YE2604 2802809 2803825 + putative oxidoreductase Similar in parts to several dehydrogenases including: Synechocystis sp. D-3-phosphoglycerate dehydrogenase SerA or Sll1908 SWALL:SERA_SYNY3 (SWALL:P73821) (554 aa) fasta scores: E(): 6.4e-23%2C 37.26 id in 322 aa and Methanobacterium thermoautotrophicum D-3-phosphoglycerate dehydrogenase Mth970 SWALL:SERA_METTH (SWALL:O27051) (525 aa) fasta scores: E(): 5e-21%2C 38.56 id in 293 aa gene gene2545 http://www.ncbi.nlm.nih.gov/gene/?term=YE2604 YE2605 YE2605 YE2605 2803850 2804794 - putative sugar kinase gene gene2546 http://www.ncbi.nlm.nih.gov/gene/?term=YE2605 YE2606 YE2606 YE2606 2804804 2805805 - putative sugar permease Similar to many sugar permeases including: Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 1.3e-27%2C 35.52 38d in 304 aa and to Yersinia pestis ribose transport system%2C permease protein Ypo1553 SWALL:Q8ZFX0 (EMBL:AJ414149) (331 aa) fasta scores: E(): 3.1e-28%2C 31.83 38d in 311 aa gene gene2547 http://www.ncbi.nlm.nih.gov/gene/?term=YE2606 YE2607 YE2607 YE2607 2805814 2806830 - putative membrane permease protein Similar to Bacillus subtilis ribose transport system permease protein RbsC SWALL:RBSC_BACSU (SWALL:P36948) (322 aa) fasta scores: E(): 3.8e-20%2C 31.83 id in 311 aa and to Rhizobium loti permease protein%2C sugar ABC transporter mlr3338 SWALL:Q98GG7 (EMBL:AP003001) (322 aa) fasta scores: E(): 4e-21%2C 30.94 38d in 307 aa gene gene2548 http://www.ncbi.nlm.nih.gov/gene/?term=YE2607 YE2608 YE2608 YE2608 2806827 2808395 - putative sugar transport%2C ATP-binding protein Similar to many including: Bacillus subtilis ribose transport ATP-binding protein RbsA SWALL:RBSA_BACSU (SWALL:P36947) (493 aa) fasta scores: E(): 1e-56%2C 37.04 id in 494 aa%2C Yersinia pestis putative sugar transport system%2C ATP-binding protein RbsA or Ypo2500 SWALL:Q8ZDQ6 (EMBL:AJ414152) (496 aa) fasta scores: E(): 9.7e-58%2C39.36 38d in 503 aa and Escherichia coli O157:H7 putative ATP-binding protein of ribose ABC transport system z5691 or ecs5073 SWALL:Q8X5Q4 (EMBL:AE005642) (517 aa) fasta scores: E(): 2.7e-57%2C 39.52 38d in 506 aa gene gene2549 http://www.ncbi.nlm.nih.gov/gene/?term=YE2608 YE2609 YE2609 YE2609 2808400 2809392 - ABC transporter%2C substrate binding component Similar to many sugar transport proteins including: Escherichia coli O157:H7 putative periplasmic ribose-binding protein of ABC transport system z5689 or ecs5071 SWALL:Q8X5Q6 (EMBL:AE005642) (313 aa) fasta scores: E(): 2.3e-10%2C 28.7 38d in 317 aa%2C Rhizobium meliloti putative rhizopine-binding protein precursor MocB SWALL:MOCB_RHIME (SWALL:P49308) (309 aa) fasta scores: E(): 0.0001%2C 26.86 38d in 309 aa and Bacillus subtilis D-ribose-binding protein precursor RbsB SWALL:RBSB_BACSU (SWALL:P36949) (305 aa) fasta scores: E(): 0.00012%2C 25.99 id in 277 aa gene gene2550 http://www.ncbi.nlm.nih.gov/gene/?term=YE2609 YE2610 YE2610 YE2610 2809929 2810732 + conserved hypothetical protein gene gene2551 http://www.ncbi.nlm.nih.gov/gene/?term=YE2610 YE2611 YE2611 int int 2811152 2812414 + integrase (pseudogene) pseudogene gene2553 http://www.ncbi.nlm.nih.gov/gene/?term=YE2611 YE2612 YE2612 ybtS ybtS 2812607 2813911 - putative salicylate synthetase gene gene2554 http://www.ncbi.nlm.nih.gov/gene/?term=YE2612 YE2613 YE2613 ybtX ybtX 2813939 2815219 - putative signal transducer gene gene2555 http://www.ncbi.nlm.nih.gov/gene/?term=YE2613 YE2614 YE2614 ybtQ ybtQ 2815212 2817014 - inner membrane ABC-transporter YbtQ gene gene2556 http://www.ncbi.nlm.nih.gov/gene/?term=YE2614 YE2615 YE2615 ybtP ybtP 2817001 2818803 - lipoprotein inner membrane ABC-transporter gene gene2557 http://www.ncbi.nlm.nih.gov/gene/?term=YE2615 YE2616 YE2616 ybtA ybtA 2819095 2820054 + transcriptional regulator YbtA gene gene2558 http://www.ncbi.nlm.nih.gov/gene/?term=YE2616 YE2617 YE2617 irp2 irp2 2820259 2826366 + yersiniabactin biosynthetic protein gene gene2559 http://www.ncbi.nlm.nih.gov/gene/?term=YE2617 YE2618 YE2618 irp1 irp1 2826454 2835939 + yersiniabactin biosynthetic protein gene gene2560 http://www.ncbi.nlm.nih.gov/gene/?term=YE2618 YE2619 YE2619 ybtU ybtU 2835936 2837036 + yersiniabactin biosynthetic protein YbtU gene gene2561 http://www.ncbi.nlm.nih.gov/gene/?term=YE2619 YE2620 YE2620 ybtT ybtT 2837033 2837836 + yersiniabactin biosynthetic protein YbtT gene gene2562 http://www.ncbi.nlm.nih.gov/gene/?term=YE2620 YE2621 YE2621 ybtE ybtE 2837840 2839417 + yersiniabactin siderophore biosynthetic protein gene gene2563 http://www.ncbi.nlm.nih.gov/gene/?term=YE2621 YE2622 YE2622 fyuA fyuA 2839548 2841569 + pesticin/yersiniabactin receptor protein gene gene2564 http://www.ncbi.nlm.nih.gov/gene/?term=YE2622 YE2624 YE2624 YE2624 2842378 2842965 - transposase for insertion sequence element IS1328 (pseudogene) Previously sequenced as Yersinia enterocolitica IS1328 transposase SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 3.2e-130%2C 98.2 38d in 334 aa. Also similar to Shigella flexneri 2a IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 1.4e-97%2C 74.08 38d in 328 aa. Note this CDS carries a frame shift mutation following codon 137. pseudogene gene2565 http://www.ncbi.nlm.nih.gov/gene/?term=YE2624 YE2625 YE2625 tnpB tnpB 2843960 2844709 - transposase B Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.4e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac0578 SWALL:AAM35467 (EMBL:AE011685) (272 aa) fasta scores: E(): 3.4e-37%2C 44.13 38d in 247 aa gene gene2566 http://www.ncbi.nlm.nih.gov/gene/?term=YE2625 YE2626 YE2626 tnpA tnpA 2844799 2845131 - IS1329 transposase A Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa gene gene2567 http://www.ncbi.nlm.nih.gov/gene/?term=YE2626 YE2628 YE2628 YE2628 2845485 2846861 + hypothetical protein Previously sequenced as Yersinia enterocolitica high pathogenicity island hypothetical protein SWALL:Q9X9I0 (EMBL:AJ132945) (458 aa) fasta scores: E(): 4.8e-188%2C 100 38d in 458 aa. Also weakly similar to Listeria monocytogenes hypothetical protein Lmo0067 SWALL:Q8YAQ0 (EMBL:AL591973) (329 aa) fasta scores: E(): 0.011%2C 25.86 38d in 375 aa gene gene2568 http://www.ncbi.nlm.nih.gov/gene/?term=YE2628 YE2629 YE2629 trp1400B trp1400B 2846919 2847713 - IS1400 transposase B Previously sequenced as Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 3.3e-107%2C 99.24 38d in 264 aa Also similar to many others e.g. Yersinia pestis putative transposase Ypcd1.94 SWALL:Q9RI05 (EMBL:AL117189) (269 aa) fasta scores: E(): 5.7e-38%2C 44.04 38d in 252 aa. Note the differing predicted start codons for this CDS compared with that previously published. gene gene2569 http://www.ncbi.nlm.nih.gov/gene/?term=YE2629 YE2630 YE2630 trp1400A trp1400A 2847764 2848051 - IS1400 transposase A Previously sequenced as Yersinia enterocolitica IS1400 transposase A Trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 3e-31%2C 96.84 38d in 95 aa. Also similar to many others e.g. Yersinia pestis putative transposase Y0084 or Ypcd1.93 SWALL:O68709 (EMBL:AF053946) (88 aa) fasta scores: E(): 5.5e-15%2C 52.27 38d in 88 aa gene gene2570 http://www.ncbi.nlm.nih.gov/gene/?term=YE2630 YE2632 YE2632 YE2632 2848733 2850496 - hypothetical protein N-terminal region has previously been sequenced as Yersinia enterocolitica hypothetical 44.5 kDa protein SWALL:Q9X9H5 (EMBL:AJ132945) (384 aa) fasta scores: E(): 2.4e-151%2C 99.47 38d in 384 aa. C-terminal region has previously been sequenced as Yersinia enterocolitica hypothetical 22.9 kDa protein SWALL:Q9X9H6 (EMBL:AJ132945) (196 aa) fasta scores: E(): 2.2e-70%2C 98.98 38d in 196 aa. Similar to the C-terminal region of Escherichia coli hypothetical protein YfjK SWALL:YFJK_ECOLI (SWALL:P52126) (729 aa) fasta scores: E(): 5.8e-29%2C 31.08 38d in 579 aa. Possible pseudogene gene gene2571 http://www.ncbi.nlm.nih.gov/gene/?term=YE2632 YE2633 YE2633 YE2633 2850641 2850952 - hypothetical protein Previously sequenced as Yersinia enterocolitica hypothetical 12.0 kDa protein SWALL:Q9X9H4 (EMBL:AJ132945) (103 aa) fasta scores: E(): 1.2e-39%2C 100 38d in 103 aa. Similar to the N-terminus of Escherichia coli hypothetical protein YfjK SWALL:YFJK_ECOLI (SWALL:P52126) (729 aa) fasta scores: E(): 0.025%2C 27.55 38d in 98 aa. Possible pseudogene gene gene2572 http://www.ncbi.nlm.nih.gov/gene/?term=YE2633 YE2634 YE2634 YE2634 2850949 2852388 - hypothetical protein N-terminus has previously sequenced as Yersinia enterocolitica hypothetical 43.1 kDa protein SWALL:Q9X9H3 (EMBL:AJ132945) (383 aa) fasta scores: E(): 1.9e-149%2C99.47 38d in 380 aa. C-terminus is similar to the C-terminal region of Corynebacterium glutamicum acetate kinase AckA or Ack SWALL:ACKA_CORGL (SWALL:P77845) (397 aa) fasta scores: E(): 1.7%2C 20.18 38d in 317 aa. Possible alternative translational start site gene gene2573 http://www.ncbi.nlm.nih.gov/gene/?term=YE2634 YE2635 YE2635 YE2635 2852375 2853514 - putative metallo-beta-lactamase superfamily protein Previously sequenced as Yersinia enterocolitica hypothetical 43.2 kDa protein SWALL:Q9X9H2 (EMBL:AJ132945) (379 aa) fasta scores: E(): 1.5e-141%2C 100 38d in 379 aa. C-terminus is similar to the C-terminal region of Staphylococcus aureus hypothetical protein SAV1588 or SA1416 SWALL:Q99TR1 (EMBL:AP003362) (733 aa) fasta scores: E(): 0.0073%2C 26.13 38d in 264 aa gene gene2574 http://www.ncbi.nlm.nih.gov/gene/?term=YE2635 YE2636 YE2636 rluA rluA 2854263 2854961 + putative ribosomal large subunit pseudouridine synthase Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.7e-21%2C 42 38d in 200 aa. N-terminus has previously been sequenced as Yersinia enterocolitica hypothetical 13.7 kDa protein SWALL:Q9X9H1 (EMBL:AJ132945) (125 aa) fasta scores: E(): 2e-48%2C 99.2 38d in 125 aa gene gene2575 http://www.ncbi.nlm.nih.gov/gene/?term=YE2636 YE2637 YE2637 YE2637 2854972 2855511 - conserved hypothetical protein Similar to many proteins of undefined function including: Yersinia pestis nucleoprotein/polynucleotide-associated enzyme y2589 SWALL:Q8D084 (EMBL:AE013861) (179 aa) fasta scores: E(): 8.5e-50%2C 92.73 38d in 179 aa and Escherichia coli hypothetical protein YaiL or b0354 SWALL:YAIL_ECOLI (SWALL:P51024) (179 aa) fasta scores: E(): 2e-46%2C 86.59 id in 179 aa gene gene2576 http://www.ncbi.nlm.nih.gov/gene/?term=YE2637 YE2638 YE2638 YE2638 2855655 2856086 - Phosphoenolpyruvate-dependent sugar phosphotransferase system%2C IIa component Similar to Bacillus stearothermophilus PTS system%2Cmannitol-specific IIa component MtlF SWALL:PTMA_BACST (SWALL:Q45420) (145 aa) fasta scores: E(): 3.4e-11%2C 33.08 id in 136 aa%2C and to Staphylococcus carnosus PTS system%2Cmannitol-specific IIa component MtlF SWALL:PTMA_STACA (SWALL:P17876) (143 aa) fasta scores: E(): 5.4e-11%2C 32.03 id in 128 aa gene gene2577 http://www.ncbi.nlm.nih.gov/gene/?term=YE2638 YE2639 YE2639 YE2639 2856139 2857536 - putative transporter protein gene gene2578 http://www.ncbi.nlm.nih.gov/gene/?term=YE2639 YE2640 YE2640 YE2640 2858260 2858595 - putative membrane protein (pseudogene) Similar to Ralstonia solanacearum putative aspartyl/asparaginyl beta-hydroxylase transmembrane protein RSC1877 or RS03437 SWALL:Q8XY86 (EMBL:AL646067) (300 aa) fasta scores: E(): 1.2e-82%2C 61.4 38d in 298 aa. N-terminus is similar to the C-terminal region of Homo sapiens aspartyl/asparaginyl beta-hydroxylase AspH SWALL:ASPH_HUMAN (SWALL:Q12797) (757 aa) fasta scores: E(): 3.1e-06%2C 28.38 38d in 229 aa. Contains a nonsense mutation (opal) after codon 188 pseudogene gene2579 http://www.ncbi.nlm.nih.gov/gene/?term=YE2640 YE2642 YE2642 YE2642 2859267 2860016 - putative phosphopantetheinyl transferase gene gene2580 http://www.ncbi.nlm.nih.gov/gene/?term=YE2642 YE2643 YE2643 YE2643 2860025 2860225 - putative exported protein Poor database matches. Similar to Yersinia pestis putative exported protein YPO2560 SWALL:Q8ZDK2 (EMBL:AJ414152) (89 aa) fasta scores: E(): 5.8%2C 50 38d in 34 aa gene gene2581 http://www.ncbi.nlm.nih.gov/gene/?term=YE2643 YE2644 YE2644 YE2644 2860721 2861560 + putative C4-dicarboxylate transporter%2Cperiplasmic protein gene gene2582 http://www.ncbi.nlm.nih.gov/gene/?term=YE2644 YE2645 YE2645 YE2645 2861684 2862190 + putative C4-dicarboxylate transporter%2C small subunit gene gene2583 http://www.ncbi.nlm.nih.gov/gene/?term=YE2645 YE2646 YE2646 YE2646 2862209 2863501 + putative C4-dicarboxylate transporter%2C large subunit gene gene2584 http://www.ncbi.nlm.nih.gov/gene/?term=YE2646 YE2647 YE2647 citT citT 2863701 2865164 - citrate carrier Similar to Escherichia coli citrate carrier CitT SWALL:CITT_ECOLI (SWALL:P77405) (487 aa) fasta scores: E(): 1.4e-159%2C 81.68 38d in 486 aa%2C and to Salmonella typhi citrate carrier STY0667 SWALL:Q8Z8J3 (EMBL:AL627267) (501 aa) fasta scores: E(): 2.3e-123%2C 79.8 38d in 500 aa gene gene2585 http://www.ncbi.nlm.nih.gov/gene/?term=YE2647 YE2648 YE2648 citG citG 2865158 2866126 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase Similar to Escherichia coli 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG SWALL:CITG_ECOLI (SWALL:P77231) (292 aa) fasta scores: E(): 5.2e-65%2C 58.27 38d in 290 aa%2C and to Salmonella typhi CitG protein STY0668 SWALL:Q8Z8J2 (EMBL:AL627267) (298 aa) fasta scores: E(): 1.5e-66%2C 64.2 id in 271 aa gene gene2586 http://www.ncbi.nlm.nih.gov/gene/?term=YE2648 YE2649 YE2649 citX citX 2866131 2866679 - putative apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Similar to Escherichia coli apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CitX SWALL:CITX_ECOLI (SWALL:P77563) (183 aa) fasta scores: E(): 5e-33%2C 49.15 38d in 177 aa%2C and to Salmonella typhimurium putative cytoplasmic protein STM0620 SWALL:Q8ZR13 (EMBL:AE008724) (183 aa) fasta scores: E(): 8.1e-32%2C 47.97 38d in 173 aa gene gene2587 http://www.ncbi.nlm.nih.gov/gene/?term=YE2649 YE2650 YE2650 citF citF 2866683 2868200 - citrate lyase alpha chain Similar to Klebsiella pneumoniae citrate lyase alpha chain CitF SWALL:CILA_KLEPN (SWALL:P45413) (508 aa) fasta scores: E(): 3.7e-133%2C 70.78 38d in 486 aa%2C and to Salmonella typhimurium bifunctional citrate lyase alpha chain/citrate-ACP transferase STM0621 SWALL:Q8ZR12 (EMBL:AE008724) (509 aa) fasta scores: E(): 2.1e-158%2C79.76 38d in 504 aa gene gene2588 http://www.ncbi.nlm.nih.gov/gene/?term=YE2650 YE2651 YE2651 citE citE 2868204 2869100 - putative citrate lyase beta chain gene gene2589 http://www.ncbi.nlm.nih.gov/gene/?term=YE2651 YE2652 YE2652 citD citD 2869097 2869390 - citrate lyase acyl carrier protein Similar to Escherichia coli citrate lyase acyl carrier protein CitD SWALL:CILG_ECOLI (SWALL:P77618) (98 aa) fasta scores: E(): 5.1e-22%2C 67.02 38d in 94 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi citrate lyase acyl carrier protein STM0623 or STY0672 SWALL:Q8XGN1 (EMBL:AE008724) (98 aa) fasta scores: E(): 8.3e-22%2C 67.02 id in 94 aa gene gene2590 http://www.ncbi.nlm.nih.gov/gene/?term=YE2652 YE2653 YE2653 citC citC 2869491 2870567 - [citrate [pro-3s]-lyase] ligase Similar to Escherichia coli [citrate [pro-3s]-lyase] ligase CitC SWALL:CITC_ECOLI (SWALL:P77390) (352 aa) fasta scores: E(): 9.5e-104%2C70.77 38d in 349 aa%2C and to Salmonella typhimurium citrate lyase synthetase STM0624 SWALL:Q8ZR10 (EMBL:AE008724) (358 aa) fasta scores: E(): 6.1e-104%2C 70.94 38d in 351 aa gene gene2591 http://www.ncbi.nlm.nih.gov/gene/?term=YE2653 YE2654 YE2654 citA citA 2870925 2872580 + sensor kinase protein Two-component regulatory system family%2C sensor kinase protein. Similar to Escherichia coli sensor kinase DpiB or CitA or MpdB SWALL:DPIB_ECOLI (SWALL:P77510) (552 aa) fasta scores: E(): 9.6e-131%2C 62.31 38d in 528 aa%2C and to Salmonella typhi sensor kinase STY0674 SWALL:Q8Z8I7 (EMBL:AL627267) (553 aa) fasta scores: E(): 3.5e-131%2C62.47 38d in 533 aa gene gene2592 http://www.ncbi.nlm.nih.gov/gene/?term=YE2654 YE2655 YE2655 citB citB 2872602 2873288 + response regulator protein Two-component regulatory system family%2C response regulator protein. Similar to Escherichia coli and Shigella flexneri transcriptional regulatory protein DpiA or CitB or MpdA or CriR SWALL:DPIA_ECOLI (SWALL:Q54149) (226 aa) fasta scores: E(): 1.4e-48%2C 59.72 38d in 221 aa%2Cand to Salmonella typhi transcriptional regulatory protein STY0675 SWALL:Q8Z8I6 (EMBL:AL627267) (226 aa) fasta scores: E(): 5e-49%2C 59.72 38d in 221 aa gene gene2593 http://www.ncbi.nlm.nih.gov/gene/?term=YE2655 YE2656 YE2656 YE2656 2873490 2874119 + GerR-family transcriptional regulatory protein Similar to Salmonella typhimurium transcriptional regulatory protein UhpA or Stm3790 SWALL:UHPA_SALTY (SWALL:P27667) (196 aa) fasta scores: E(): 5.7e-33%2C 52.52 id in 198 aa and to Escherichia coli O157:H7 putative response regulator%2C hexosephosphate transport z0463 or ecs0418 SWALL:Q8X5I8 (EMBL:AE005216) (209 aa) fasta scores: E(): 7.8e-57%2C 72.24 38d in 209 aa gene gene2594 http://www.ncbi.nlm.nih.gov/gene/?term=YE2656 YE2657 YE2657 YE2657 2874121 2875698 + sensor kinase protein Two-component regulatory system family%2C sensor kinase protein. Similar to Salmonella typhimurium sensor protein UhpB SWALL:UHPB_SALTY (SWALL:P27668) (500 aa) fasta scores: E(): 4.6e-29%2C 37.57 38d in 495 aa%2C and to Escherichia coli O157:H7 putative sensor kinase%2Chexosephosphate transport Z0462 or ECS0417 SWALL:Q8X5I9 (EMBL:AE005216) (513 aa) fasta scores: E(): 4.4e-104%2C55.92 38d in 506 aa gene gene2595 http://www.ncbi.nlm.nih.gov/gene/?term=YE2657 YE2658 YE2658 YE2658 2875787 2877118 + putative transporter protein Similar to Escherichia coli regulatory protein UhpC SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 2.1e-90%2C 53.09 38d in 420 aa%2C and to Escherichia coli glycerol-3-phosphate transporter GlpT SWALL:GLPT_ECOLI (SWALL:P08194) (452 aa) fasta scores: E(): 3.2e-47%2C 33.18 id in 437 aa gene gene2596 http://www.ncbi.nlm.nih.gov/gene/?term=YE2658 YE2659 YE2659 YE2659 2877238 2878269 + extracellular solute-binding protein Similar to Serratia marcescens iron(iii)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 2.8e-09%2C 23.69 id in 346 aa%2C and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 2.5e-116%2C84.25 38d in 343 aa gene gene2597 http://www.ncbi.nlm.nih.gov/gene/?term=YE2659 YE2660 YE2660 YE2660 2878392 2880470 + putative binding protein-dependent transport system%2C inner-membrane component gene gene2598 http://www.ncbi.nlm.nih.gov/gene/?term=YE2660 YE2661 YE2661 YE2661 2880496 2881587 + ferric transport ATP-binding protein Similar to Actinobacillus pleuropneumoniae ferric transport ATP-binding protein AfuC SWALL:AFUC_ACTPL (SWALL:Q57293) (348 aa) fasta scores: E(): 3.6e-64%2C 60.87 id in 345 aa%2C and to Escherichia coli putative ferric transport ATP-binding protein AfuC SWALL:AFUC_ECOLI (SWALL:P37009) (348 aa) fasta scores: E(): 9.8e-93%2C 80.11 id in 347 aa gene gene2599 http://www.ncbi.nlm.nih.gov/gene/?term=YE2661 YE2662 YE2662 YE2662 2882443 2883075 + putative two-component response regulator gene gene2601 http://www.ncbi.nlm.nih.gov/gene/?term=YE2662 YE2663 YE2663 YE2663 2883050 2886874 + putative virulence sensor protein Similar to Bordetella pertussis virulence sensor protein BvgS SWALL:BVGS_BORPE (SWALL:P16575) (1238 aa) fasta scores: E(): 8.4e-91%2C 29.87 38d in 1242 aa%2C and to Bordetella bronchiseptica virulence sensor protein BvgS SWALL:BVGS_BORBR (SWALL:P26762) (1238 aa) fasta scores: E(): 1.3e-89%2C 29.23 38d in 1245 aa gene gene2602 http://www.ncbi.nlm.nih.gov/gene/?term=YE2663 YE2664 YE2664 YE2664 2887252 2887782 + fimbrial protein gene gene2603 http://www.ncbi.nlm.nih.gov/gene/?term=YE2664 YE2665 YE2665 YE2665 2887875 2888609 + probable pili assembly chaperone gene gene2604 http://www.ncbi.nlm.nih.gov/gene/?term=YE2665 YE2666 YE2666 YE2666 2888658 2891282 + probable fimbrial usher protein gene gene2605 http://www.ncbi.nlm.nih.gov/gene/?term=YE2666 YE2667 YE2667 YE2667 2891387 2892631 + putative exported protein gene gene2606 http://www.ncbi.nlm.nih.gov/gene/?term=YE2667 YE2668 YE2668 YE2668 2892628 2893368 + probable pili assembly chaperone gene gene2607 http://www.ncbi.nlm.nih.gov/gene/?term=YE2668 YE2669 YE2669 YE2669 2893724 2894614 - putative ketopantoate reductase Similar to Salmonella typhimurium 2-dehydropantoate 2-reductase PanE or ApbA SWALL:PANE_SALTY (SWALL:P37402) (303 aa) fasta scores: E(): 0.076%2C 22.26 38d in 283 aa%2Cand to Mycobacterium tuberculosis putative 2-dehydropantoate 2-reductase RV2573 or MT2649 or MTCY227.28c SWALL:PANE_MYCTU (SWALL:Q50648) (295 aa) fasta scores: E(): 3.3e-56%2C 52.57 38d in 291 aa gene gene2609 http://www.ncbi.nlm.nih.gov/gene/?term=YE2669 YE2669A YE2669A YE2669A 2894937 2895395 - putative acetyltransferase gene gene2610 http://www.ncbi.nlm.nih.gov/gene/?term=YE2669A YE2670 YE2670 YE2670 2895497 2896978 + putative GntR-family regulatory protein gene gene2611 http://www.ncbi.nlm.nih.gov/gene/?term=YE2670 YE2671 YE2671 YE2671 2897247 2897555 - hypothetical protein Similar to the N-terminal regions of Agrobacterium tumefaciens short-chain dehydrogenase ATU5444 or AGR_PAT_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 1.3e-09%2C 48.93 38d in 94 aa%2C and Rhizobium meliloti putative oxidoreductase protein RB0207 or SMB20214 SWALL:Q92WX0 (EMBL:AL603642) (267 aa) fasta scores: E(): 2.6e-05%2C 46.47 38d in 71 aa. Possible gene remnant gene gene2612 http://www.ncbi.nlm.nih.gov/gene/?term=YE2671 YE2672 YE2672 YE2672 2897703 2898287 + TetR family transcription regulatory protein Similar to Rhizobium meliloti putative transcriptional regulator RA1038 or SMA1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.1e-23%2C39.15 38d in 189 aa%2C and to Rhizobium loti transcriptional regulator MLR2831 SWALL:Q98HK7 (EMBL:AP003000) (193 aa) fasta scores: E(): 3.6e-22%2C 37.83 38d in 185 aa gene gene2613 http://www.ncbi.nlm.nih.gov/gene/?term=YE2672 YE2673 YE2673 YE2673 2898367 2899341 - putative chemotaxis protein Similar to Bacillus subtilis chemotaxis protein CheV SWALL:CHEV_BACSU (SWALL:P37599) (303 aa) fasta scores: E(): 3.7e-15%2C 29.66 38d in 300 aa%2C and to Salmonella typhimurium putative chemotaxis signal transduction protein STM2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 1.7e-78%2C 66.87 38d in 323 aa gene gene2614 http://www.ncbi.nlm.nih.gov/gene/?term=YE2673 YE2674 YE2674 YE2674 2899520 2900692 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2315 SWALL:Q9I1G0 (EMBL:AE004657) (391 aa) fasta scores: E(): 5.9e-86%2C 62.36 38d in 372 aa%2C and to Pseudomonas marginata esterase EstB SWALL:Q9KX40 (EMBL:U33634) (392 aa) fasta scores: E(): 1.2e-68%2C 51.26 id in 394 aa gene gene2615 http://www.ncbi.nlm.nih.gov/gene/?term=YE2674 YE2675 YE2675 YE2675 2900763 2901524 - DeoR family regulatory protein Similar to Pseudomonas aeruginosa glycerol-3-phosphate regulon repressor GlpR SWALL:GLPR_PSEAE (SWALL:Q51391) (251 aa) fasta scores: E(): 2.4e-17%2C 28.96 38d in 252 aa%2C and to Salmonella typhi DeoR family regulatory protein STY4412 SWALL:Q8Z1V2 (EMBL:AL627282) (252 aa) fasta scores: E(): 9e-45%2C 54.31 id in 232 aa gene gene2616 http://www.ncbi.nlm.nih.gov/gene/?term=YE2675 YE2676 YE2676 YE2676 2901629 2902438 - putative haloacid dehalogenase-like hydrolase Similar to Listeria monocytogenes hypothetical protein LMO0272 SWALL:Q8YA87 (EMBL:AL591974) (270 aa) fasta scores: E(): 5.5e-25%2C 31.57 38d in 266 aa%2C and to Listeria innocua hypothetical protein LIN0298 SWALL:Q92F10 (EMBL:AL596164) (270 aa) fasta scores: E(): 5.5e-25%2C 31.2 id in 266 aa gene gene2617 http://www.ncbi.nlm.nih.gov/gene/?term=YE2676 YE2677 YE2677 YE2677 2902618 2903457 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein STY4414 SWALL:Q8Z1V0 (EMBL:AL627282) (279 aa) fasta scores: E(): 5.3e-78%2C 78.85 38d in 279 aa%2C and weakly similar to Methanosarcina acetivorans 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methyliden eamino] imidazole-4-carboxamide isomerase MA0218 SWALL:AAM03671 (EMBL:AE010680) (245 aa) fasta scores: E(): 0.064%2C 24.7 38d in 255 aa gene gene2618 http://www.ncbi.nlm.nih.gov/gene/?term=YE2677 YE2678 YE2678 YE2678 2903500 2905104 - putative phosphotransferase system component Similar to Salmonella typhi putative membrane protein STY4415 SWALL:Q8Z1U9 (EMBL:AL627282) (492 aa) fasta scores: E(): 4.4e-130%2C 75.91 38d in 494 aa. C-terminal region is similar to Escherichia coli PTS system%2C fructose-like-2 IIC component FrwC SWALL:PTWC_ECOLI (SWALL:P32672) (359 aa) fasta scores: E(): 0.0007%2C 25.3 38d in 328 aa. CDS is extended at the N-terminus in comparison to the S. typhi protein. Possible alternative translational start site gene gene2619 http://www.ncbi.nlm.nih.gov/gene/?term=YE2678 YE2679 YE2679 YE2679 2905488 2906885 - putative sugar transporter gene gene2620 http://www.ncbi.nlm.nih.gov/gene/?term=YE2679 YE2680 YE2680 argG argG 2907123 2908487 + argininosuccinate synthase gene gene2621 http://www.ncbi.nlm.nih.gov/gene/?term=YE2680 YE2681 YE2681 YE2681 2908619 2909098 - conserved hypothetical protein gene gene2622 http://www.ncbi.nlm.nih.gov/gene/?term=YE2681 YE2682 YE2682 YE2682 2909098 2909925 - conserved hypothetical protein gene gene2623 http://www.ncbi.nlm.nih.gov/gene/?term=YE2682 YE2683 YE2683 YE2683 2909951 2910793 - conserved hypothetical protein gene gene2624 http://www.ncbi.nlm.nih.gov/gene/?term=YE2683 YE2683A YE2683A YE2683A 2910799 2911059 - hypothetical exported protein gene gene2625 http://www.ncbi.nlm.nih.gov/gene/?term=YE2683A YE2684 YE2684 YE2684 2911171 2913885 - conserved hypothetical protein The glycine rich C-teminus which also carries multiple copies of the repeat PEPTD|PEPTV gene gene2626 http://www.ncbi.nlm.nih.gov/gene/?term=YE2684 YE2685 YE2685 YE2685 2914034 2917867 - putative exported protein gene gene2627 http://www.ncbi.nlm.nih.gov/gene/?term=YE2685 YE2686 YE2686 YE2686 2917876 2919252 - putative OmpA family protein Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium putative outer membrane protein%2C OmpA family Stm0282 or sciP SWALL:Q93IS0 (EMBL:AE008707) (434 aa) fasta scores: E(): 3.9e-56%2C 43.95 38d in 389 aa%2C and to Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein t2581 SWALL:AAO70159 (EMBL:AE016842) (433 aa) fasta scores: E(): 1.2e-55%2C 43.95 38d in 389 aa gene gene2628 http://www.ncbi.nlm.nih.gov/gene/?term=YE2686 YE2687 YE2687 YE2687 2919249 2920598 - conserved hypothetical protein gene gene2629 http://www.ncbi.nlm.nih.gov/gene/?term=YE2687 YE2688 YE2688 YE2688 2920602 2921153 - putative exported protein gene gene2630 http://www.ncbi.nlm.nih.gov/gene/?term=YE2688 YE2689 YE2689 YE2689 2921360 2921845 - conserved hypothetical protein gene gene2631 http://www.ncbi.nlm.nih.gov/gene/?term=YE2689 YE2690 YE2690 YE2690 2922177 2923604 - conserved hypothetical protein gene gene2632 http://www.ncbi.nlm.nih.gov/gene/?term=YE2690 YE2691 YE2691 YE2691 2923697 2924221 - conserved hypothetical protein gene gene2633 http://www.ncbi.nlm.nih.gov/gene/?term=YE2691 YE2692 YE2692 YE2692 2924326 2924928 - fimbrial protein gene gene2634 http://www.ncbi.nlm.nih.gov/gene/?term=YE2692 YE2693 YE2693 YE2693 2924913 2927588 - outer membrane usher protein gene gene2635 http://www.ncbi.nlm.nih.gov/gene/?term=YE2693 YE2694 YE2694 YE2694 2927692 2928489 - putative pili chaperone protein gene gene2636 http://www.ncbi.nlm.nih.gov/gene/?term=YE2694 YE2695 YE2695 YE2695 2928597 2929157 - frimbrial protein gene gene2637 http://www.ncbi.nlm.nih.gov/gene/?term=YE2695 YE2696 YE2696 clpB5 clpB5 2929324 2931996 - Clp ATPase gene gene2638 http://www.ncbi.nlm.nih.gov/gene/?term=YE2696 YE2697 YE2697 YE2697 2932716 2934596 + conserved hypothetical protein gene gene2639 http://www.ncbi.nlm.nih.gov/gene/?term=YE2697 YE2698 YE2698 YE2698 2934596 2935621 + conserved hypothetical protein gene gene2640 http://www.ncbi.nlm.nih.gov/gene/?term=YE2698 YE2699 YE2699 YE2699 2935696 2936859 + conserved hypothetical protein gene gene2641 http://www.ncbi.nlm.nih.gov/gene/?term=YE2699 YE2700 YE2700 YE2700 2936866 2937870 + putative fimbrial protein gene gene2642 http://www.ncbi.nlm.nih.gov/gene/?term=YE2700 YE2701 YE2701 YE2701 2937909 2939246 + conserved hypothetical protein gene gene2643 http://www.ncbi.nlm.nih.gov/gene/?term=YE2701 YE2702 YE2702 YE2702 2939243 2939890 + putative membrane protein gene gene2644 http://www.ncbi.nlm.nih.gov/gene/?term=YE2702 YE2703 YE2703 YE2703 2939891 2941561 + putative membrane protein gene gene2645 http://www.ncbi.nlm.nih.gov/gene/?term=YE2703 YE2704 YE2704 YE2704 2941568 2942053 + conserved hypothetical protein gene gene2646 http://www.ncbi.nlm.nih.gov/gene/?term=YE2704 YE2705 YE2705 YE2705 2942187 2942789 - putative luxR-family regulatory protein gene gene2647 http://www.ncbi.nlm.nih.gov/gene/?term=YE2705 YE2706 YE2706 YE2706 2943688 2944173 - transcription regulator/permease fusion protein (pseudogene) No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Escherichia coli xanthosine operon regulatory protein XapR or PndR SWALL:XAPR_ECOLI (SWALL:P23841) (294 aa) fasta scores: E(): 5.1e-05%2C 70.27 38d in 37 aa. C-terminus is similar to an internal region of Escherichia coli xanthosine permease XapB SWALL:XAPB_ECOLI (SWALL:P45562) (418 aa) fasta scores: E(): 4.7e-21%2C 57.72 38d in 123 aa. CDS appears to be a fusion protein%2C possibly resulting from a deletion event. Region that is similar to the permease contains frameshifts after codons 79 and 131 pseudogene gene2648 http://www.ncbi.nlm.nih.gov/gene/?term=YE2706 YE2707 YE2707 cobT cobT 2944349 2945407 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase Similar to Escherichia coli nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT SWALL:COBT_ECOLI (SWALL:P36562) (359 aa) fasta scores: E(): 2e-82%2C 66.38 id in 351 aa%2C and to Salmonella typhimurium nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase STM2016 SWALL:COBT_SALTY (SWALL:Q05603) (356 aa) fasta scores: E(): 1.6e-84%2C 68.07 id in 354 aa gene gene2672 http://www.ncbi.nlm.nih.gov/gene/?term=YE2707 YE2708 YE2708 cobC cobC 2945430 2946062 - alpha-ribazole-5'-phosphate phosphatase Similar to Escherichia coli alpha-ribazole-5'-phosphate phosphatase CobC or PhpB SWALL:COBC_ECOLI (SWALL:P52086) (203 aa) fasta scores: E(): 4.9e-22%2C 48.07 38d in 208 aa%2C and to Salmonella typhimurium alpha-ribazole-5'-phosphate phosphatase STM0643 SWALL:COBC_SALTY (SWALL:P39701) (202 aa) fasta scores: E(): 1.1e-21%2C 49.04 38d in 210 aa pseudogene gene2673 http://www.ncbi.nlm.nih.gov/gene/?term=YE2708 YE2709 YE2709 cobS cobS 2946100 2946846 - cobalamin [5'-phosphate] synthase Similar to Escherichia coli cobalamin [5'-phosphate] synthase CobS SWALL:COBS_ECOLI (SWALL:P36561) (247 aa) fasta scores: E(): 1e-56%2C 62.19 id in 246 aa%2C and to Salmonella typhi cobalamin (5'-phosphate) synthase STY2220 SWALL:Q8Z5N8 (EMBL:AL627273) (247 aa) fasta scores: E(): 1.6e-60%2C66.12 38d in 248 aa gene gene2674 http://www.ncbi.nlm.nih.gov/gene/?term=YE2709 YE2710 YE2710 cobU cobU 2946843 2947388 - cobinamide kinase and guanylyltransferase Similar to Escherichia coli bifunctional cobalamin biosynthesis protein [includes: cobinamide kinase%3B cobinamide phosphate guanylyltransferase] CobU SWALL:COBU_ECOLI (SWALL:P46886) (181 aa) fasta scores: E(): 2.5e-39%2C 59.66 38d in 181 aa%2C and to Salmonella typhi cobinamide kinase and guanylyltransferase STY2221 SWALL:Q8Z5N7 (EMBL:AL627273) (181 aa) fasta scores: E(): 3.1e-41%2C 63.53 38d in 181 aa gene gene2675 http://www.ncbi.nlm.nih.gov/gene/?term=YE2710 YE2711 YE2711 cbiP cbiP 2947385 2948923 - cobyric acid synthase Similar to Salmonella typhimurium cobyric acid synthase CbiP SWALL:CBIP_SALTY (SWALL:Q05597) (506 aa) fasta scores: E(): 1.9e-130%2C 68.3 38d in 508 aa%2C and to Salmonella typhi putative cobyric acid synthase STY2222 SWALL:Q8Z5N6 (EMBL:AL627273) (506 aa) fasta scores: E(): 4.1e-131%2C 68.7 38d in 508 aa gene gene2676 http://www.ncbi.nlm.nih.gov/gene/?term=YE2711 YE2712 YE2712 cbiO cbiO 2948935 2949750 - putative cobalt transport ATP-binding protein Similar to Salmonella typhimurium cobalt transport ATP-binding protein CbiO SWALL:CBIO_SALTY (SWALL:Q05596) (271 aa) fasta scores: E(): 8.7e-63%2C 67.77 38d in 270 aa%2Cand to Salmonella typhi putative cobalt transport ATP-binding protein STY2223 SWALL:Q8Z5N5 (EMBL:AL627273) (271 aa) fasta scores: E(): 3.4e-63%2C 68.14 38d in 270 aa gene gene2677 http://www.ncbi.nlm.nih.gov/gene/?term=YE2712 YE2713 YE2713 cbiQ cbiQ 2949762 2950439 - putative cobalt transport protein Similar to Salmonella typhimurium cobalt transport protein CbiQ SWALL:CBIQ_SALTY (SWALL:Q05598) (225 aa) fasta scores: E(): 5.5e-56%2C 58.66 38d in 225 aa%2C and to Salmonella typhi putative cobalt transport protein STY2224 SWALL:Q8Z5N4 (EMBL:AL627273) (225 aa) fasta scores: E(): 5.5e-56%2C 58.66 38d in 225 aa gene gene2678 http://www.ncbi.nlm.nih.gov/gene/?term=YE2713 YE2714 YE2714 cbiM cbiM 2950709 2951440 - putative membrane protein Similar to Salmonella typhimurium cobalamin biosynthetic operon hypothetical protein CbiM SWALL:CBIM_SALTY (SWALL:Q05594) (245 aa) fasta scores: E(): 2.7e-78%2C 81.48 38d in 243 aa%2C and to Listeria monocytogenes hypothetical protein LMO1204 SWALL:Q8Y7R7 (EMBL:AL591978) (244 aa) fasta scores: E(): 3.5e-56%2C63.24 38d in 234 aa gene gene2680 http://www.ncbi.nlm.nih.gov/gene/?term=YE2714 YE2714A YE2714A cbiN cbiN 2950426 2950707 - cobalt transport protein cbiN gene gene2679 http://www.ncbi.nlm.nih.gov/gene/?term=YE2714A YE2715 YE2715 cbiL cbiL 2951617 2952330 - precorrin-2 C20-methyltransferase Similar to Salmonella typhimurium precorrin-2 C20-methyltransferase CbiL SWALL:CBIL_SALTY (SWALL:Q05593) (237 aa) fasta scores: E(): 1.2e-68%2C 73.27 38d in 232 aa%2Cand to Salmonella typhi precorrin-2 C20-methyltransferase STY2228 SWALL:Q8Z5N2 (EMBL:AL627273) (237 aa) fasta scores: E(): 6.2e-68%2C 72.84 38d in 232 aa gene gene2681 http://www.ncbi.nlm.nih.gov/gene/?term=YE2715 YE2716 YE2716 cbiK cbiK 2952330 2953124 - cobalt chelatase Similar to Salmonella typhimurium cobalt chelatase cbiK SWALL:CBIK_SALTY (SWALL:Q05592) (264 aa) fasta scores: E(): 5.8e-64%2C 66.66 38d in 264 aa%2C and to Listeria monocytogenes CbiK protein SWALL:Q8Y7R9 (EMBL:AL591978) (261 aa) fasta scores: E(): 7.8e-53%2C 54.26 38d in 258 aa gene gene2682 http://www.ncbi.nlm.nih.gov/gene/?term=YE2716 YE2717 YE2717 cbiJ cbiJ 2953121 2953948 - precorrin-6X reductase Similar to Salmonella typhimurium precorrin-6X reductase CbiJ SWALL:CBIJ_SALTY (SWALL:Q05591) (263 aa) fasta scores: E(): 2.6e-48%2C 52.75 38d in 254 aa%2C and to Listeria innocua hypothetical protein LIN1163 SWALL:Q92CK8 (EMBL:AL596167) (250 aa) fasta scores: E(): 2e-29%2C 42.1 id in 228 aa gene gene2683 http://www.ncbi.nlm.nih.gov/gene/?term=YE2717 YE2718 YE2718 cbiH cbiH 2953945 2954670 - precorrin-3 C17-methyltransferase Similar to Salmonella typhimurium precorrin-3B C17-methyltransferase CbiH SWALL:CBIH_SALTY (SWALL:Q05590) (241 aa) fasta scores: E(): 2.1e-78%2C 80.49 38d in 241 aa%2Cand to Salmonella typhi precorrin-3 C17-methyltransferase STY2232 SWALL:Q8Z5N1 (EMBL:AL627273) (241 aa) fasta scores: E(): 1.3e-78%2C 80.91 38d in 241 aa gene gene2684 http://www.ncbi.nlm.nih.gov/gene/?term=YE2718 YE2719 YE2719 cbiG cbiG 2954670 2955725 - conserved hypothetical protein (pseudogene) Similar to Salmonella typhimurium protein cobalamin biosynthetic operon hypothetical protein CbiG SWALL:CBIG_SALTY (SWALL:Q05631) (351 aa) fasta scores: E(): 4.2e-97%2C 68.09 38d in 351 aa%2C and to Salmonella typhi CbiG protein STY2233 SWALL:Q8Z5N0 (EMBL:AL627273) (351 aa) fasta scores: E(): 1.9e-96%2C 68.09 38d in 351 aa pseudogene gene2685 http://www.ncbi.nlm.nih.gov/gene/?term=YE2719 YE2719a YE2719a cbiF cbiF 2955706 2956497 - precorrin-4 C11-methyltransferase Similar to Salmonella typhimurium%2C and Salmonella typhi precorrin-4 C11-methyltransferase CbiF or STY2234 SWALL:CBIF_SALTY (SWALL:Q05630) (257 aa) fasta scores: E(): 1.1e-73%2C 78.73 38d in 254 aa%2C and to Listeria monocytogenes CbiF protein LMO1197 SWALL:Q8Y7S4 (EMBL:AL591978) (249 aa) fasta scores: E(): 5.2e-59%2C66.39 38d in 247 aa gene gene2686 http://www.ncbi.nlm.nih.gov/gene/?term=YE2719a YE2720 YE2720 cbiT cbiT 2956490 2957059 - precorrin-8W decarboxylase Similar to Salmonella typhimurium precorrin-8W decarboxylase CbiT SWALL:CBIT_SALTY (SWALL:Q05632) (192 aa) fasta scores: E(): 1.1e-49%2C 66.66 38d in 189 aa%2C and to Salmonella typhi precorrin-8W decarboxylase STY2235 SWALL:Q8Z5M9 (EMBL:AL627273) (192 aa) fasta scores: E(): 1.4e-49%2C 66.66 38d in 189 aa gene gene2687 http://www.ncbi.nlm.nih.gov/gene/?term=YE2720 YE2721 YE2721 cbiE cbiE 2957049 2957651 - precorrin-6Y C5%2C15-methyltransferase [decarboxylating] Similar to Salmonella typhimurium%2C and Salmonella typhi precorrin-6Y C5%2C15-methyltransferase [decarboxylating] CbiE or STY2236 SWALL:CBIE_SALTY (SWALL:Q05629) (201 aa) fasta scores: E(): 3.3e-39%2C 55.22 id in 201 aa%2C and to Listeria innocua cbie protein cbie or lin1158 SWALL:Q92CL3 (EMBL:AL596167) (198 aa) fasta scores: E(): 1.6e-35%2C 51 38d in 200 aa gene gene2688 http://www.ncbi.nlm.nih.gov/gene/?term=YE2721 YE2722 YE2722 cbiD cbiD 2957648 2958814 - conserved hypothetical protein Similar to Salmonella typhimurium cobalamin biosynthetic operon hypothetical protein CbiD SWALL:CBID_SALTY (SWALL:Q05628) (379 aa) fasta scores: E(): 1.4e-113%2C 76.69 38d in 369 aa%2C and to Salmonella typhi Cbid protein STY2237 SWALL:Q8Z5M8 (EMBL:AL627273) (379 aa) fasta scores: E(): 2.6e-112%2C 75.88 38d in 369 aa gene gene2689 http://www.ncbi.nlm.nih.gov/gene/?term=YE2722 YE2723 YE2723 cbiC cbiC 2958811 2959458 - precorrin-8X methylmutase Similar to Salmonella typhimurium precorrin-8X methylmutase CbiC SWALL:CBIC_SALTY (SWALL:Q05601) (210 aa) fasta scores: E(): 3.2e-53%2C 69.23 38d in 208 aa%2C and to Listeria innocua hypothetical protein LIN1156 SWALL:Q92CL5 (EMBL:AL596167) (210 aa) fasta scores: E(): 2.8e-39%2C53.33 38d in 210 aa gene gene2690 http://www.ncbi.nlm.nih.gov/gene/?term=YE2723 YE2724 YE2724 cbiB cbiB 2959472 2960428 - putative membrane protein Similar to Salmonella typhimurium cobalamin biosynthetic operon hypothetical protein CbiB SWALL:CBIB_SALTY (SWALL:Q05600) (319 aa) fasta scores: E(): 2.6e-84%2C 65.09 38d in 318 aa%2C and to Salmonella typhi CbiB protein STY2239 SWALL:Q8Z5M7 (EMBL:AL627273) (319 aa) fasta scores: E(): 1.5e-84%2C 65.4 38d in 318 aa gene gene2691 http://www.ncbi.nlm.nih.gov/gene/?term=YE2724 YE2725 YE2725 cbiA cbiA 2960425 2961828 - cobyrinic acid A%2CC-diamide synthase Similar to Salmonella typhimurium cobyrinic acid A%2CC-diamide synthase CbiA SWALL:CBIA_SALTY (SWALL:P29946) (459 aa) fasta scores: E(): 2e-118%2C 64.5 38d in 462 aa%2Cand to Salmonella typhi cobyrinic acid A%2CC-diamide synthase STY2240 SWALL:Q8Z5M6 (EMBL:AL627273) (474 aa) fasta scores: E(): 7.4e-118%2C 63.75 38d in 469 aa gene gene2692 http://www.ncbi.nlm.nih.gov/gene/?term=YE2725 YE2726 YE2726 pocR pocR 2962484 2963386 - pdu and cob operons regulatory protein Similar to Salmonella typhimurium regulatory protein PocR SWALL:POCR_SALTY (SWALL:Q05587) (303 aa) fasta scores: E(): 3.3e-96%2C 80.2 38d in 298 aa%2C and to Salmonella typhi pdu/cob regulatory protein STY2241 SWALL:Q8Z5M5 (EMBL:AL627273) (304 aa) fasta scores: E(): 1.9e-95%2C 79.93 38d in 299 aa gene gene2693 http://www.ncbi.nlm.nih.gov/gene/?term=YE2726 YE2727 YE2727 pduF pduF 2963678 2964493 - propanediol diffusion facilitator Similar to Salmonella typhimurium propanediol diffusion facilitator PduF SWALL:PDUF_SALTY (SWALL:P37451) (264 aa) fasta scores: E(): 2e-89%2C 81.81 38d in 264 aa%2Cand to Salmonella typhi propanediol diffusion facilitator STY2242 SWALL:Q8Z5M4 (EMBL:AL627273) (264 aa) fasta scores: E(): 2.7e-89%2C 81.81 38d in 264 aa gene gene2694 http://www.ncbi.nlm.nih.gov/gene/?term=YE2727 YE2728 YE2728 pduA pduA 2965247 2965543 + putative propanediol utilization protein Similar to Salmonella typhimurium%2C and Salmonella typhi propanediol utilization protein PduA or STY2243 SWALL:PDUA_SALTY (SWALL:P37448) (94 aa) fasta scores: E(): 5.8e-26%2C 89.01 38d in 91 aa%2C and to Listeria innocua hypothetical protein LIN1123 SWALL:Q92CP8 (EMBL:AL596167) (91 aa) fasta scores: E(): 1.2e-23%2C 83.9 38d in 87 aa gene gene2649 http://www.ncbi.nlm.nih.gov/gene/?term=YE2728 YE2729 YE2729 pduB pduB 2965543 2966370 + putative propanediol utilization protein Similar to Salmonella typhimurium propanediol utilization protein PduB SWALL:PDUB_SALTY (SWALL:P37449) (233 aa) fasta scores: E(): 9.5e-75%2C 90.98 38d in 233 aa%2Cand to Salmonella typhi putative propanediol utilization protein STY2244 SWALL:Q8Z5M3 (EMBL:AL627273) (233 aa) fasta scores: E(): 8.3e-75%2C 91.41 38d in 233 aa. Possible alternative translational start site gene gene2650 http://www.ncbi.nlm.nih.gov/gene/?term=YE2729 YE2730 YE2730 pduC pduC 2966391 2968055 + putative propanediol utilization protein: dehydratase%2C large subunit Similar to Salmonella typhimurium glycerol dehydratase large subunit PduC SWALL:DHAB_SALTY (SWALL:P37450) (554 aa) fasta scores: E(): 2e-206%2C 94.21 id in 553 aa%2C and to Klebsiella oxytoca diol dehydrase PddA SWALL:Q59470 (EMBL:D45071) (554 aa) fasta scores: E(): 1.8e-206%2C 94.21 38d in 553 aa gene gene2651 http://www.ncbi.nlm.nih.gov/gene/?term=YE2730 YE2731 YE2731 pduD pduD 2968068 2968739 + putative propanediol utilization protein: dehydratase%2C medium subunit Similar to Salmonella typhimurium propanediol utilization protein: dehydratase%2C medium subunit PduD SWALL:O31041 (EMBL:AE008790) (224 aa) fasta scores: E(): 2.9e-69%2C 86.6 38d in 224 aa%2C and to Klebsiella oxytoca diol dehydrase PddB SWALL:Q59471 (EMBL:D45071) (224 aa) fasta scores: E(): 6.1e-69%2C 86.6 38d in 224 aa gene gene2652 http://www.ncbi.nlm.nih.gov/gene/?term=YE2731 YE2732 YE2732 pduE pduE 2968754 2969278 + putative propanediol utilization protein: dehydratase%2C small subunit Similar to Salmonella typhimurium propanediol utilization protein: dehydratase%2C small subunit PduE SWALL:O31042 (EMBL:AE008790) (173 aa) fasta scores: E(): 3.7e-47%2C 78.73 38d in 174 aa%2C and to Klebsiella oxytoca diol dehydrase PddC SWALL:Q59472 (EMBL:D45071) (173 aa) fasta scores: E(): 2.8e-47%2C 78.16 38d in 174 aa gene gene2653 http://www.ncbi.nlm.nih.gov/gene/?term=YE2732 YE2733 YE2733 pduG pduG 2969606 2971432 + putative propanediol utilization protein: diol dehydratase reactivation Similar to Salmonella typhimurium propanediol utilization protein: diol dehydratase reactivation PduG SWALL:O31043 (EMBL:AE008790) (610 aa) fasta scores: E(): 8.3e-170%2C 81.81 38d in 605 aa%2C and to Klebsiella oxytoca diol dehydratase-reactivating factor large subunit DdrA SWALL:O68195 (EMBL:AF017781) (610 aa) fasta scores: E(): 1.8e-169%2C 81.81 38d in 605 aa gene gene2654 http://www.ncbi.nlm.nih.gov/gene/?term=YE2733 YE2734 YE2734 pduH pduH 2971429 2971770 + putative propanediol utilization protein: diol dehydratase reactivation Similar to Salmonella typhimurium propanediol utilization protein: diol dehydratase reactivation PduH SWALL:Q8ZNR6 (EMBL:AE008790) (116 aa) fasta scores: E(): 2.2e-19%2C 50.44 38d in 113 aa%2C and to Klebsiella oxytoca diol dehydratase-reactivating factor small subunit DdrB SWALL:O68196 (EMBL:AF017781) (125 aa) fasta scores: E(): 3e-18%2C 48.67 38d in 113 aa gene gene2655 http://www.ncbi.nlm.nih.gov/gene/?term=YE2734 YE2735 YE2735 pduA pduA 2971802 2972077 + putative propanediol utilization protein Similar to Salmonella typhimurium and Salmonella typhi propanediol utilization protein PduA or STY2243 SWALL:PDUA_SALTY (SWALL:P37448) (94 aa) fasta scores: E(): 5.7e-23%2C 84.7 38d in 85 aa%2C and to Salmonella typhimurium ethanolamine utilization protein EutM or CchA SWALL:EUTM_SALTY (SWALL:P41791) (96 aa) fasta scores: E(): 6.6e-18%2C 66.66 38d in 87 aa gene gene2656 http://www.ncbi.nlm.nih.gov/gene/?term=YE2735 YE2736 YE2736 pduK pduK 2972099 2972701 + putative propanediol utilization protein: polyhedral bodies Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduK SWALL:Q9XDN6 (EMBL:AE008790) (160 aa) fasta scores: E(): 5.1e-17%2C47.23 38d in 199 aa%2C and to Listeria monocytogenes hypothetical protein LMO1158 SWALL:Q8Y7W1 (EMBL:AL591978) (145 aa) fasta scores: E(): 1.7e-09%2C 30.76 38d in 195 aa. CDS contains extra residues relative to orthologues gene gene2657 http://www.ncbi.nlm.nih.gov/gene/?term=YE2736 YE2737 YE2737 pduL pduL 2972701 2973348 + putative propanediol utilization protein Similar to Salmonella typhimurium propanediol utilization protein PduL: SWALL:Q9XDN5 (EMBL:AE008790) (210 aa) fasta scores: E(): 2e-58%2C 77.29 38d in 207 aa%2Cand to Listeria innocua hypothetical protein LIN1124 SWALL:Q92CP7 (EMBL:AL596167) (211 aa) fasta scores: E(): 3.2e-34%2C 50.71 38d in 211 aa gene gene2658 http://www.ncbi.nlm.nih.gov/gene/?term=YE2737 YE2738 YE2738 pduM pduM 2973345 2973842 + putative propanediol utilization protein Similar to Salmonella typhimurium propanediol utilization protein PduM SWALL:Q9XDN4 (EMBL:AE008790) (163 aa) fasta scores: E(): 3.7e-20%2C 40.12 38d in 157 aa%2C and to Salmonella typhi hypothetical protein STY2253 SWALL:Q8Z5L5 (EMBL:AL627273) (163 aa) fasta scores: E(): 9.6e-20%2C 39.49 38d in 157 aa gene gene2659 http://www.ncbi.nlm.nih.gov/gene/?term=YE2738 YE2739 YE2739 pduN pduN 2973846 2974121 + putative propanediol utilization protein: polyhedral bodies Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduN SWALL:Q9XDN3 (EMBL:AE008790) (91 aa) fasta scores: E(): 2.5e-21%2C 74.44 id in 90 aa%2C and to Listeria monocytogenes hypothetical protein LMO1163 SWALL:Q8Y7V6 (EMBL:AL591978) (87 aa) fasta scores: E(): 4e-12%2C 55.17 38d in 87 aa gene gene2660 http://www.ncbi.nlm.nih.gov/gene/?term=YE2739 YE2740 YE2740 pduO pduO 2974137 2975153 + putative propanediol utilization protein: B12 related Similar to Salmonella typhimurium propanediol utilization protein: B12 related PduO SWALL:Q8ZNR5 (EMBL:AE008790) (336 aa) fasta scores: E(): 2.6e-77%2C63.28 38d in 335 aa%2C and to Listeria innocua highly similar to salmonella enterica PduO protein LIN1128 SWALL:Q92CP3 (EMBL:AL596167) (331 aa) fasta scores: E(): 1e-57%2C 49.7 38d in 334 aa gene gene2661 http://www.ncbi.nlm.nih.gov/gene/?term=YE2740 YE2741 YE2741 pduP pduP 2975153 2976541 + putative propanediol utilization protein: CoA-dependent propionaldehyde dehydrogenase Similar to Salmonella typhimurium propanediol utilization protein: CoA-dependent propionaldehyde dehydrogenase PduP SWALL:Q9XDN1 (EMBL:AE008790) (464 aa) fasta scores: E(): 3.6e-139%2C 79.18 38d in 466 aa%2C and to Listeria innocua hypothetical protein LIN1129 SWALL:Q92CP2 (EMBL:AL596167) (469 aa) fasta scores: E(): 4.9e-103%2C58.93 38d in 470 aa gene gene2662 http://www.ncbi.nlm.nih.gov/gene/?term=YE2741 YE2742 YE2742 pduQ pduQ 2976552 2977667 + putative propanediol utilization protein: propanol dehydrogenase Similar to Salmonella typhimurium propanediol utilization protein: propanol dehydrogenase PduQ WALL:Q9XDN0 (EMBL:AE008790) (370 aa) fasta scores: E(): 6.6e-101%2C 70.19 38d in 369 aa%2C and to Listeria innocua hypothetical protein LIN1130 SWALL:Q92CP1 (EMBL:AL596167) (372 aa) fasta scores: E(): 1.3e-64%2C 47.97 38d in 371 aa gene gene2663 http://www.ncbi.nlm.nih.gov/gene/?term=YE2742 YE2743 YE2743 pduS pduS 2977690 2979051 + putative NADH dehydrogenase Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduS SWALL:Q9XDM9 (EMBL:AE008790) (451 aa) fasta scores: E(): 1.1e-122%2C72.14 38d in 438 aa%2C and to Listeria monocytogenes hypothetical protein LMO1142 SWALL:Q8Y7X7 (EMBL:AL591978) (454 aa) fasta scores: E(): 6e-48%2C 37.05 38d in 448 aa gene gene2664 http://www.ncbi.nlm.nih.gov/gene/?term=YE2743 YE2744 YE2744 pduT pduT 2979077 2979634 + putative propanediol utilization protein: polyhedral bodies Similar to Salmonella typhimurium propanediol utilization protein: polyhedral bodies PduT SWALL:Q9XDM8 (EMBL:AE008790) (184 aa) fasta scores: E(): 4.1e-55%2C73.22 38d in 183 aa%2C and to Listeria monocytogenes hypothetical protein LMO1143 SWALL:Q8Y7X6 (EMBL:AL591978) (184 aa) fasta scores: E(): 1.9e-23%2C 41.01 38d in 178 aa gene gene2665 http://www.ncbi.nlm.nih.gov/gene/?term=YE2744 YE2745 YE2745 pduU pduU 2979634 2979984 + putative propanediol utilization protein Similar to Salmonella typhimurium and Salmonella typhi propanediol utilization protein PduU or STY2260 SWALL:PDUU_SALTY (SWALL:Q9XDM7) (116 aa) fasta scores: E(): 5.6e-32%2C 80.17 38d in 116 aa%2C and to Listeria innocua hypothetical protein Lin1108 lin1108 SWALL:Q92CR3 (EMBL:AL596167) (116 aa) fasta scores: E(): 1.3e-26%2C 68.1 id in 116 aa gene gene2666 http://www.ncbi.nlm.nih.gov/gene/?term=YE2745 YE2746 YE2746 pduV pduV 2979989 2980423 + conserved hypothetical protein Similar to Salmonella typhimurium propanediol utilization protein PduV SWALL:PDUV_SALTY (SWALL:Q9XDM6) (150 aa) fasta scores: E(): 5.4e-28%2C 61.97 38d in 142 aa%2Cand to Listeria monocytogenes hypothetical protein LMO1145 SWALL:Q8Y7X4 (EMBL:AL591978) (143 aa) fasta scores: E(): 3.7e-16%2C 39.71 38d in 141 aa gene gene2667 http://www.ncbi.nlm.nih.gov/gene/?term=YE2746 YE2747 YE2747 pduW pduW 2980451 2981689 + putative propionate kinase Similar to Salmonella typhimurium probable propionate kinase PduW SWALL:PDUW_SALTY (SWALL:P74879) (404 aa) fasta scores: E(): 5.5e-104%2C 66.08 38d in 401 aa%2Cand to Bacillus halodurans acetate kinase BH3192 SWALL:ACKA_BACHD (SWALL:Q9K815) (391 aa) fasta scores: E(): 2.9e-82%2C 54.66 38d in 397 aa gene gene2668 http://www.ncbi.nlm.nih.gov/gene/?term=YE2747 YE2748 YE2748 cobA cobA 2981698 2982465 + putative uroporphyrin-III C-methyltransferase Similar to Bacillus megaterium uroporphyrin-III C-methyltransferase CobA SWALL:SUMT_BACME (SWALL:P29928) (238 aa) fasta scores: E(): 4.7e-40%2C 49.57 38d in 234 aa. Similar to the N-terminal region of Listeria innocua hypothetical protein LIN1164 SWALL:Q92CK7 (EMBL:AL596167) (493 aa) fasta scores: E(): 1.2e-53%2C 60.4 38d in 245 aa%2Cand to the C-terminal region of Escherichia coli siroheme synthase [includes: uroporphyrin-III C-methyltransferase%3B precorrin-2 oxidase ferrochelatase] CysG SWALL:CYSG_ECOLI (SWALL:P11098) (457 aa) fasta scores: E(): 1.3e-39%2C 50.62 id in 239 aa gene gene2669 http://www.ncbi.nlm.nih.gov/gene/?term=YE2748 YE2749 YE2749 cobD cobD 2982513 2983586 + putative L-threonine-O-3-phosphate decarboxylase Similar to Salmonella typhimurium protein with L-threonine-O-3-phosphate decarboxylase activity CobD SWALL:P97084 (EMBL:U90625) (364 aa) fasta scores: E(): 2e-71%2C 53.5 38d in 357 aa%2C and to Salmonella typhi putative aminotransferase STY0695 SWALL:Q8Z8H8 (EMBL:AL627267) (364 aa) fasta scores: E(): 1.4e-72%2C54.06 38d in 357 aa gene gene2670 http://www.ncbi.nlm.nih.gov/gene/?term=YE2749 YE2750 YE2750 pduX pduX 2983579 2984439 + putative GHMP kinase Similar to Salmonella typhimurium propanediol utilization protein PduX SWALL:Q9XDM4 (EMBL:AE008790) (300 aa) fasta scores: E(): 7.1e-66%2C 59.44 38d in 286 aa. Weakly similar to Bacillus subtilis homoserine kinase ThrB SWALL:KHSE_BACSU (SWALL:P04948) (309 aa) fasta scores: E(): 2.1%2C 24.13 38d in 232 aa gene gene2671 http://www.ncbi.nlm.nih.gov/gene/?term=YE2750 YE2751 YE2751 YE2751 2984805 2985788 + putative periplasmic binding protein gene gene2695 http://www.ncbi.nlm.nih.gov/gene/?term=YE2751 YE2752 YE2752 YE2752 2986055 2987470 + ABC transporter ATP binding protein gene gene2696 http://www.ncbi.nlm.nih.gov/gene/?term=YE2752 YE2753 YE2753 YE2753 2987463 2988485 + putative branched-chain amino acid transport system%2C permease component gene gene2697 http://www.ncbi.nlm.nih.gov/gene/?term=YE2753 YE2754 YE2754 YE2754 2988488 2989471 + putative ABC transporter%2C permease protein gene gene2698 http://www.ncbi.nlm.nih.gov/gene/?term=YE2754 YE2755 YE2755 YE2755 2989561 2989878 - conserved hypothetical protein gene gene2699 http://www.ncbi.nlm.nih.gov/gene/?term=YE2755 YE2756 YE2756 YE2756 2990042 2991100 - putative membrane protein Similar to Salmonella typhimurium putative inner membrane protein STM2060 SWALL:Q8ZNR4 (EMBL:AE008791) (352 aa) fasta scores: E(): 3.6e-81%2C 58.8 38d in 352 aa%2C and to Salmonella typhi putative membrane protein STY2265 SWALL:Q8Z5K6 (EMBL:AL627273) (352 aa) fasta scores: E(): 1.5e-80%2C 58.23 38d in 352 aa gene gene2700 http://www.ncbi.nlm.nih.gov/gene/?term=YE2756 YE2757 YE2757 YE2757 2991396 2992505 - conserved hypothetical protein gene gene2701 http://www.ncbi.nlm.nih.gov/gene/?term=YE2757 YE2758 YE2758 sbcB sbcB 2992871 2994301 + exodeoxyribonuclease I gene gene2702 http://www.ncbi.nlm.nih.gov/gene/?term=YE2758 YE2759 YE2759 yeeF yeeF 2994485 2995873 - Amino acid permease gene gene2703 http://www.ncbi.nlm.nih.gov/gene/?term=YE2759 YE2760 YE2760 YE2760 2995863 2996078 - hypothetical protein No significant database matches. Doubtful CDS gene gene2704 http://www.ncbi.nlm.nih.gov/gene/?term=YE2760 YE2761 YE2761 YE2761 2996327 2997418 - putative dehydrogenase gene gene2705 http://www.ncbi.nlm.nih.gov/gene/?term=YE2761 YE2762 YE2762 YE2762 2997638 2999149 + putative ABC transport system ATP-binding protein Similar to Bacillus subtilis ribose transport ATP-binding protein RbsA SWALL:RBSA_BACSU (SWALL:P36947) (493 aa) fasta scores: E(): 4e-57%2C 36.08 38d in 496 aa%2Cand to Yersinia pestis sugar transport ATP-binding protein YPO3964 SWALL:Q8ZA54 (EMBL:AJ414160) (507 aa) fasta scores: E(): 2.2e-57%2C 37.52 38d in 493 aa gene gene2706 http://www.ncbi.nlm.nih.gov/gene/?term=YE2762 YE2763 YE2763 YE2763 2999146 3000144 + ribose transport system%2C permease protein gene gene2707 http://www.ncbi.nlm.nih.gov/gene/?term=YE2763 YE2764 YE2764 YE2764 3000319 3001146 - putative exported protein gene gene2708 http://www.ncbi.nlm.nih.gov/gene/?term=YE2764 YE2765 YE2765 hisG hisG 3001692 3002591 + ATP phosphoribosyltransferase gene gene2709 http://www.ncbi.nlm.nih.gov/gene/?term=YE2765 YE2766 YE2766 hisD hisD 3002595 3003920 + histidinol dehydrogenase gene gene2710 http://www.ncbi.nlm.nih.gov/gene/?term=YE2766 YE2767 YE2767 hisC hisC 3003917 3005041 + histidinol-phosphate aminotransferase gene gene2711 http://www.ncbi.nlm.nih.gov/gene/?term=YE2767 YE2768 YE2768 hisB hisB 3005038 3006105 + histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase gene gene2712 http://www.ncbi.nlm.nih.gov/gene/?term=YE2768 YE2769 YE2769 hisH hisH 3006105 3006695 + amidotransferase gene gene2713 http://www.ncbi.nlm.nih.gov/gene/?term=YE2769 YE2770 YE2770 hisA hisA 3006701 3007438 + phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase gene gene2714 http://www.ncbi.nlm.nih.gov/gene/?term=YE2770 YE2771 YE2771 hisF hisF 3007420 3008196 + histidine biosynthesic protein (cyclase) gene gene2715 http://www.ncbi.nlm.nih.gov/gene/?term=YE2771 YE2772 YE2772 hisI hisI 3008190 3008804 + histidine biosynthesis bifunctional protein [includes: phosphoribosyl-amp cyclohydrolase gene gene2716 http://www.ncbi.nlm.nih.gov/gene/?term=YE2772 YE2773 YE2773 gnd gnd 3009059 3010465 - 6-phosphogluconate dehydrogenase%2Cdecarboxylating gene gene2717 http://www.ncbi.nlm.nih.gov/gene/?term=YE2773 YE2774 YE2774 YE2774 3010777 3012114 + transposase for insertion sequence element IS1660 ighly similar to many transposases from the IS element IS4 including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 2e-165%2C 89.72 id in 438 aa%2C and to Pantoea agglomerans nsertion element protein SWALL:P71168 (EMBL:X81894) (440 aa) fasta scores: E(): 1.8e-86%2C 52.42 38d in 433 aa gene gene2718 http://www.ncbi.nlm.nih.gov/gene/?term=YE2774 YE2775 YE2775 YE2775 3012621 3012956 + transposase for insertion sequence element IS1665 Similar to the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 3.9e-52%2C 50.22 38d in 440 aa%2C and to Shigella flexneri IS4 orf s0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 3.9e-52%2C 48.81 38d in 422 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences.%3B YE2776 gene gene2719 http://www.ncbi.nlm.nih.gov/gene/?term=YE2775 YE2777 YE2777 galF galF 3013002 3013895 - UTP-glucose-1-phosphate uridylyltransferase gene gene2720 http://www.ncbi.nlm.nih.gov/gene/?term=YE2777 YE2778 YE2778 galU galU 3013961 3014842 - UTP-glucose-1-phosphate uridylyltransferase gene gene2721 http://www.ncbi.nlm.nih.gov/gene/?term=YE2778 YE2779 YE2779 YE2779 3015331 3016917 + putative membrane protein gene gene2722 http://www.ncbi.nlm.nih.gov/gene/?term=YE2779 YE2780 YE2780 dcuC dcuC 3017011 3018369 - anaerobic C4-dicarboxylate transporter Similar to Escherichia coli anaerobic C4-dicarboxylate transporter DcuC SWALL:DCUC_ECOLI (SWALL:Q47134) (461 aa) fasta scores: E(): 2.2e-140%2C85.49 38d in 448 aa%2C and to Salmonella typhi C4-dicarboxylate anaerobic carrier STY0676 SWALL:Q8Z8I5 (EMBL:AL627267) (461 aa) fasta scores: E(): 3.3e-140%2C84.63 38d in 449 aa gene gene2723 http://www.ncbi.nlm.nih.gov/gene/?term=YE2780 YE2781 YE2781 YE2781 3018701 3020548 - putative exported protein gene gene2724 http://www.ncbi.nlm.nih.gov/gene/?term=YE2781 YE2782 YE2782 dcd dcd 3020613 3021194 - deoxycytidine triphosphate deaminase gene gene2725 http://www.ncbi.nlm.nih.gov/gene/?term=YE2782 YE2783 YE2783 udk udk 3021280 3021921 - uridine kinase gene gene2726 http://www.ncbi.nlm.nih.gov/gene/?term=YE2783 YE2784 YE2784 YE2784 3022059 3023171 - conserved hypothetical protein gene gene2727 http://www.ncbi.nlm.nih.gov/gene/?term=YE2784 YE2785 YE2785 metG metG 3023451 3025478 + methionyl-tRNA synthetase gene gene2728 http://www.ncbi.nlm.nih.gov/gene/?term=YE2785 YE2786 YE2786 YE2786 3025558 3026394 - putative membrane protein Poor database matches. C-terminal region is similar to Yersinia pestis putative membrane protein YPO1518 SWALL:Q8ZG02 (EMBL:AJ414148) (175 aa) fasta scores: E(): 7.8e-41%2C 63.42 38d in 175 aa gene gene2729 http://www.ncbi.nlm.nih.gov/gene/?term=YE2786 YE2787 YE2787 YE2787 3026840 3027931 + putative sugar ABC transporter gene gene2730 http://www.ncbi.nlm.nih.gov/gene/?term=YE2787 YE2788 YE2788 YE2788 3028130 3029383 + conserved hypothetical protein gene gene2731 http://www.ncbi.nlm.nih.gov/gene/?term=YE2788 YE2789 YE2789 YE2789 3029582 3030802 + putative multidrug resistance protein gene gene2732 http://www.ncbi.nlm.nih.gov/gene/?term=YE2789 YE2790 YE2790 yohJ yohJ 3030901 3031308 + putative membrane protein gene gene2733 http://www.ncbi.nlm.nih.gov/gene/?term=YE2790 YE2791 YE2791 yohK yohK 3031305 3032000 + putative membrane protein gene gene2734 http://www.ncbi.nlm.nih.gov/gene/?term=YE2791 YE2792 YE2792 cdd cdd 3032139 3033023 + cytidine deaminase gene gene2735 http://www.ncbi.nlm.nih.gov/gene/?term=YE2792 YE2793 YE2793 YE2793 3033097 3033444 - putative lipoprotein No significant database matches gene gene2736 http://www.ncbi.nlm.nih.gov/gene/?term=YE2793 YE2794 YE2794 sfcA sfcA 3033911 3035608 + NAD-dependent malic enzyme gene gene2737 http://www.ncbi.nlm.nih.gov/gene/?term=YE2794 YE2795 YE2795 sanA sanA 3035775 3036578 + putative exported protein gene gene2738 http://www.ncbi.nlm.nih.gov/gene/?term=YE2795 YE2796 YE2796 hypC hypC 3036629 3036907 - putative hydrogenase isoenzymes formation protein Similar to Escherichia coli hydrogenase isoenzymes formation protein HypC SWALL:HYPC_ECOLI (SWALL:P24191) (90 aa) fasta scores: E(): 8.2e-15%2C 52.17 38d in 92 aa%2C and to Proteus vulgaris frd operon hypothetical protein C SWALL:YFRC_PROVU (SWALL:P20927) (96 aa) fasta scores: E(): 4e-16%2C 58.69 38d in 92 aa gene gene2739 http://www.ncbi.nlm.nih.gov/gene/?term=YE2796 YE2797 YE2797 hypA hypA 3036948 3037295 - putative hydrogenase nickel incorporation protein Similar to Escherichia coli probable hydrogenase nickel incorporation protein HybF SWALL:HYBF_ECOLI (SWALL:P37184) (113 aa) fasta scores: E(): 1.5e-22%2C 48.69 id in 115 aa%2C and to Escherichia coli HypA protein SWALL:HYPA_ECOLI (SWALL:P24189) (116 aa) fasta scores: E(): 2.3e-29%2C 60.87 38d in 115 aa gene gene2740 http://www.ncbi.nlm.nih.gov/gene/?term=YE2797 YE2798 YE2798 hyfA hyfA 3037703 3038344 + hydrogenase-4 component A Similar to Escherichia coli formate hydrogenlyase subunit 2 HycB or HevB SWALL:HYCB_ECOLI (SWALL:P16428) (203 aa) fasta scores: E(): 3.2e-40%2C 53.84 38d in 208 aa%2Cand to Similar to Escherichia coli hydrogenase-4 component A HyfA SWALL:HYFA_ECOLI (SWALL:P23481) (205 aa) fasta scores: E(): 2e-38%2C 50.25 38d in 193 aa gene gene2741 http://www.ncbi.nlm.nih.gov/gene/?term=YE2798 YE2799 YE2799 hyfB hyfB 3038341 3040368 + hydrogenase-4 component B Similar to Escherichia coli hydrogenase-4 component B HyfB SWALL:HYFB_ECOLI (SWALL:P23482) (672 aa) fasta scores: E(): 1.5e-144%2C 57.84 38d in 676 aa%2C and to Escherichia coli formate hydrogenlyase subunit 3 HycC or HevC SWALL:HYCC_ECOLI (SWALL:P16429) (608 aa) fasta scores: E(): 1.7e-62%2C 38.58 38d in 609 aa gene gene2742 http://www.ncbi.nlm.nih.gov/gene/?term=YE2799 YE2800 YE2800 hyfC hyfC 3040380 3041333 + hydrogenase-4 component C Similar to Escherichia coli formate hydrogenlyase subunit 4 HycD or HevD SWALL:HYCD_ECOLI (SWALL:P16430) (307 aa) fasta scores: E(): 7.6e-63%2C 57.37 38d in 305 aa%2Cand to Escherichia coli hydrogenase-4 component C HyfC SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 1.3e-75%2C 67.1 38d in 307 aa gene gene2743 http://www.ncbi.nlm.nih.gov/gene/?term=YE2800 YE2801 YE2801 hyfD hyfD 3041352 3042821 + hydrogenase-4 component D Similar to Escherichia coli hydrogenase-4 component D HyfD SWALL:HYFD_ECOLI (SWALL:P77416) (479 aa) fasta scores: E(): 1.7e-128%2C 69.39 38d in 477 aa%2C and to Thermoanaerobacter tengcongensis NADH:ubiquinone oxidoreductase subunit 5 TTE1701 SWALL:AAM24902 (EMBL:AE013124) (479 aa) fasta scores: E(): 3.4e-99%2C56.66 38d in 480 aa. CDS is extended at the N-terminus in comparison to orthologues gene gene2744 http://www.ncbi.nlm.nih.gov/gene/?term=YE2801 YE2802 YE2802 hyfE hyfE 3042833 3043498 + hydrogenase-4 component E Similar to Escherichia coli hydrogenase-4 component E HyfE SWALL:HYFE_ECOLI (SWALL:P77524) (216 aa) fasta scores: E(): 3.3e-47%2C 62.96 38d in 216 aa%2C and to Thermoanaerobacter tengcongensis hydrogenase 4 membrane subunit TTE1704 SWALL:AAM24904 (EMBL:AE013124) (204 aa) fasta scores: E(): 2.6e-34%2C 48.52 38d in 204 aa gene gene2745 http://www.ncbi.nlm.nih.gov/gene/?term=YE2802 YE2803 YE2803 hyfF hyfF 3043503 3045140 + hydrogenase-4 component F Similar to Escherichia coli hydrogenase-4 component F HyfF SWALL:HYFF_ECOLI (SWALL:P77437) (526 aa) fasta scores: E(): 4.3e-129%2C 67.49 38d in 523 aa%2C and to Thermoanaerobacter tengcongensis formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter%2C MnhD subunit TTE1702 SWALL:AAM24903 (EMBL:AE013124) (494 aa) fasta scores: E(): 1.3e-94%2C 52.12 38d in 495 aa. CDS is extended at the C-terminus in comparsion to the T. tengcongensis protein gene gene2746 http://www.ncbi.nlm.nih.gov/gene/?term=YE2803 YE2804 YE2804 hyfG hyfG 3045142 3046947 + hydrogenase-4 component G Similar to Escherichia coli hydrogenase-4 component G HyfG SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 1.1e-100%2C 72.58 38d in 580 aa%2C and to Escherichia coli formate hydrogenlyase subunit 5 precursor HycE or HevE SWALL:HYCE_ECOLI (SWALL:P16431) (569 aa) fasta scores: E(): 2.8e-158%2C 72.41 38d in 580 aa gene gene2747 http://www.ncbi.nlm.nih.gov/gene/?term=YE2804 YE2805 YE2805 hyfH hyfH 3046959 3047546 + hydrogenase-4 component H Similar to Escherichia coli formate hydrogenlyase subunit 6 HycF or HevF SWALL:HYCF_ECOLI (SWALL:P16432) (180 aa) fasta scores: E(): 1.9e-35%2C 50.57 38d in 174 aa%2Cand to Escherichia coli hydrogenase-4 component H HyfH SWALL:HYFH_ECOLI (SWALL:P77423) (181 aa) fasta scores: E(): 4.8e-37%2C 55.29 38d in 170 aa gene gene2748 http://www.ncbi.nlm.nih.gov/gene/?term=YE2805 YE2806 YE2806 hyfI hyfI 3047543 3048349 + hydrogenase-4 component I Similar to Escherichia coli formate hydrogenlyase subunit 7 HycG or HevG SWALL:HYCG_ECOLI (SWALL:P16433) (255 aa) fasta scores: E(): 4.7e-63%2C 64.25 38d in 249 aa%2Cand to Escherichia coli hydrogenase-4 component I HyfI SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 6.3e-63%2C 64.65 38d in 249 aa gene gene2749 http://www.ncbi.nlm.nih.gov/gene/?term=YE2806 YE2807 YE2807 hyfJ hyfJ 3048342 3048743 + hydrogenase-4 component J Similar to Escherichia coli formate hydrogenlyase maturation protein HycH or HevH SWALL:HYCH_ECOLI (SWALL:P16434) (136 aa) fasta scores: E(): 3e-24%2C 54.61 id in 130 aa%2C and to Escherichia coli hydrogenase-4 component J HyfJ SWALL:HYFJ_ECOLI (SWALL:P77453) (137 aa) fasta scores: E(): 4.7e-27%2C 55.81 38d in 129 aa gene gene2750 http://www.ncbi.nlm.nih.gov/gene/?term=YE2807 YE2808 YE2808 hyfK hyfK 3048740 3049213 + putative hydrogenase maturation protease Similar to Escherichia coli hydrogenase 3 maturation protease HycI SWALL:HYCI_ECOLI (SWALL:Q57451) (155 aa) fasta scores: E(): 1.8e-40%2C 71.33 38d in 150 aa%2Cand to Salmonella typhimurium protease involved in processing C-terminal end of HycE STM2845 SWALL:Q8ZMJ3 (EMBL:AE008830) (156 aa) fasta scores: E(): 7e-40%2C 70.19 id in 151 aa gene gene2751 http://www.ncbi.nlm.nih.gov/gene/?term=YE2808 YE2809 YE2809 hydN hydN 3049640 3050182 + 4Fe-4S ferrodoxin gene gene2752 http://www.ncbi.nlm.nih.gov/gene/?term=YE2809 YE2810 YE2810 fdhF fdhF 3050211 3052358 + formate dehydrogenase H gene gene2753 http://www.ncbi.nlm.nih.gov/gene/?term=YE2810 YE2811 YE2811 hyfR hyfR 3052602 3054761 - putative hydrogenlyase transcriptional activator Similar to Escherichia coli formate hydrogenlyase transcriptional activator FhlA SWALL:FHLA_ECOLI (SWALL:P19323) (692 aa) fasta scores: E(): 1.2e-111%2C51.57 38d in 698 aa%2C and to Enterobacter aerogenes formate hydrogenlyase activator protein FhlA SWALL:Q9L6V0 (EMBL:AF232732) (690 aa) fasta scores: E(): 1.3e-115%2C52.79 38d in 699 aa gene gene2754 http://www.ncbi.nlm.nih.gov/gene/?term=YE2811 YE2812 YE2812 focB focB 3055206 3056060 + putative formate transporter Similar to Escherichia coli probable formate transporter 1 FocA SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 2.8e-86%2C 75.35 38d in 284 aa%2C and to Yersinia pestis putative formate transporter 1 YPO1384 SWALL:Q8ZGB9 (EMBL:AJ414148) (285 aa) fasta scores: E(): 2.6e-90%2C 80.35 38d in 280 aa gene gene2755 http://www.ncbi.nlm.nih.gov/gene/?term=YE2812 YE2813 YE2813 mglC mglC 3056171 3057181 - galactoside permease gene gene2756 http://www.ncbi.nlm.nih.gov/gene/?term=YE2813 YE2814 YE2814 mglA mglA 3057202 3058722 - galactoside transport ATP-binding protein gene gene2757 http://www.ncbi.nlm.nih.gov/gene/?term=YE2814 YE2815 YE2815 mglB mglB 3058918 3059910 - galactose-binding protein gene gene2758 http://www.ncbi.nlm.nih.gov/gene/?term=YE2815 YE2816 YE2816 galS galS 3060265 3061302 - mgl repressor and galactose ultrainduction factor Similar to Escherichia coli mgl repressor and galactose ultrainduction factor GalS SWALL:GALS_ECOLI (SWALL:P25748) (346 aa) fasta scores: E(): 2.9e-90%2C 70.51 id in 329 aa%2C and to Salmonella typhimurium mgl repressor and galactose ultrainduction factor GalS SWALL:GALS_SALTY (SWALL:P41030) (340 aa) fasta scores: E(): 5e-90%2C 70.82 id in 329 aa gene gene2759 http://www.ncbi.nlm.nih.gov/gene/?term=YE2816 YE2817 YE2817 yeiB yeiB 3061484 3062650 - putative exported protein gene gene2760 http://www.ncbi.nlm.nih.gov/gene/?term=YE2817 YE2818 YE2818 folE folE 3062705 3063367 - GTP cyclohydrolase I gene gene2761 http://www.ncbi.nlm.nih.gov/gene/?term=YE2818 YE2819 YE2819 YE2819 3063522 3064694 - putative exported protein gene gene2762 http://www.ncbi.nlm.nih.gov/gene/?term=YE2819 YE2820 YE2820 YE2820 3064831 3065700 + putative LysR-family transcriptional regulatory protein gene gene2763 http://www.ncbi.nlm.nih.gov/gene/?term=YE2820 YE2821 YE2821 YE2821 3065971 3067119 + probable alcohol dehydrogenase gene gene2764 http://www.ncbi.nlm.nih.gov/gene/?term=YE2821 YE2822 YE2822 YE2822 3067140 3067982 + putative esterase gene gene2765 http://www.ncbi.nlm.nih.gov/gene/?term=YE2822 YE2822A YE2822A YE2822A 3068409 3068621 + conserved hypothetical protein N terminus differs slightly%2C conserved in Yersinia spp. gene gene2766 http://www.ncbi.nlm.nih.gov/gene/?term=YE2822A YE2823 YE2823 YE2823 3068765 3071137 + putative membrane protein gene gene2767 http://www.ncbi.nlm.nih.gov/gene/?term=YE2823 YE2824 YE2824 YE2824 3071142 3072404 + putative exported protein gene gene2768 http://www.ncbi.nlm.nih.gov/gene/?term=YE2824 YE2825 YE2825 YE2825 3072406 3073065 + ABC transporter ATP-binding protein gene gene2769 http://www.ncbi.nlm.nih.gov/gene/?term=YE2825 YE2826 YE2826 YE2826 3073083 3074393 + putative heme-binding protein gene gene2770 http://www.ncbi.nlm.nih.gov/gene/?term=YE2826 YE2827 YE2827 YE2827 3074501 3075040 - conserved hypothetical protein Similar to Ralstonia solanacearum putative transmembrane protein RSC2089 or RS03654 SWALL:Q8XXM4 (EMBL:AL646068) (192 aa) fasta scores: E(): 5.3e-22%2C39.89 38d in 183 aa%2C and to the C-terminal region of Rhizobium meliloti hypothetical protein R02007 or SMC04178 SWALL:Q92NZ4 (EMBL:AL591789) (239 aa) fasta scores: E(): 1.7e-25%2C 39.77 38d in 176 aa gene gene2771 http://www.ncbi.nlm.nih.gov/gene/?term=YE2827 YE2828 YE2828 moeA moeA 3075244 3076479 + molybdopterin biosynthesis protein gene gene2772 http://www.ncbi.nlm.nih.gov/gene/?term=YE2828 YE2829 YE2829 moeB moeB 3076519 3077304 + molybdopterin biosynthesis protein gene gene2773 http://www.ncbi.nlm.nih.gov/gene/?term=YE2829 YE2830 YE2830 YE2830 3077686 3080112 + putative exported protein No significant database matches gene gene2774 http://www.ncbi.nlm.nih.gov/gene/?term=YE2830 YE2831 YE2831 ybiT ybiT 3080223 3081818 - ABC transporter ATP-binding protein gene gene2775 http://www.ncbi.nlm.nih.gov/gene/?term=YE2831 YE2832 YE2832 YE2832 3081998 3083407 - hypothetical protein No significant database matches to the full length CDS. N-terminal region is similar to Lactococcus lactis unknown protein LL1298 SWALL:Q9CG12 (EMBL:AE006362) (118 aa) fasta scores: E(): 1.8e-14%2C 45.37 38d in 108 aa%2C and the C-terminal region is similar to Lactococcus lactis unknown protein LL1299 SWALL:Q9CG11 (EMBL:AE006362) (317 aa) fasta scores: E(): 1.1e-72%2C 57.91 38d in 316 aa gene gene2776 http://www.ncbi.nlm.nih.gov/gene/?term=YE2832 YE2833 YE2833 YE2833 3083465 3084403 - putative membrane protein gene gene2777 http://www.ncbi.nlm.nih.gov/gene/?term=YE2833 YE2834 YE2834 YE2834 3084900 3085592 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein PA2764 SWALL:Q9I079 (EMBL:AE004704) (231 aa) fasta scores: E(): 4.4e-38%2C 49.1 38d in 224 aa%2C and to Rhizobium loti hypothetical protein MLL2018 mll2018 SWALL:Q98JB5 (EMBL:AP002998) (233 aa) fasta scores: E(): 1.5e-31%2C43.36 38d in 226 aa gene gene2778 http://www.ncbi.nlm.nih.gov/gene/?term=YE2834 YE2835 YE2835 ompX ompX 3085714 3086241 - outer membrane protein gene gene2779 http://www.ncbi.nlm.nih.gov/gene/?term=YE2835 YE2836 YE2836 YE2836 3086365 3086589 - hypothetical protein Poor database matches. Similar to the C-terminal region of Bacillus halodurans hypothetical protein BH0515 SWALL:Q9KFG4 (EMBL:AP001508) (105 aa) fasta scores: E(): 9.2%2C 31.88 38d in 69 aa gene gene2780 http://www.ncbi.nlm.nih.gov/gene/?term=YE2836 YE2837 YE2837 YE2837 3086644 3087531 + putative membrane protein gene gene2781 http://www.ncbi.nlm.nih.gov/gene/?term=YE2837 YE2838 YE2838 YE2838 3087545 3088036 + conserved hypothetical protein gene gene2782 http://www.ncbi.nlm.nih.gov/gene/?term=YE2838 YE2839 YE2839 YE2839 3088214 3088774 + putative exported protein Similar to Rhizobium loti hypothetical protein MLR4813 SWALL:Q98D87 (EMBL:AP003005) (186 aa) fasta scores: E(): 6.6e-30%2C 56.66 38d in 180 aa%2C and to the C-terminal region of Agrobacterium tumefaciens hypothetical protein ATU0472 or AGR_C_835 SWALL:Q8UI28 (EMBL:AE009017) (217 aa) fasta scores: E(): 1.8e-30%2C56.45 38d in 186 aa gene gene2783 http://www.ncbi.nlm.nih.gov/gene/?term=YE2839 YE2840 YE2840 YE2840 3088834 3089388 + putative RNA polymerase sigma factor Similar to Pseudomonas aeruginosa RNA polymerase sigma-H factor AlgU or AlgT SWALL:RPSH_PSEAE (SWALL:Q06198) (193 aa) fasta scores: E(): 2.5e-06%2C 25.14 id in 175 aa%2C and to Streptomyces coelicolor putative RNA polymerase sigma factor SCO1723 or SCI11.12c SWALL:Q9S2A7 (EMBL:AL096849) (185 aa) fasta scores: E(): 7.5e-16%2C32.36 38d in 173 aa gene gene2784 http://www.ncbi.nlm.nih.gov/gene/?term=YE2840 YE2841 YE2841 YE2841 3089385 3090050 + putative membrane protein Similar to Rhizobium loti hypothetical protein MLL4823 SWALL:Q98D79 (EMBL:AP003005) (244 aa) fasta scores: E(): 5.7e-07%2C 30.7 38d in 228 aa%2C and to Rhizobium meliloti hypothetical transmembrane protein R00440 or SMC01725 SWALL:Q92SF9 (EMBL:AL591783) (237 aa) fasta scores: E(): 4.5e-05%2C 30.45 38d in 220 aa gene gene2785 http://www.ncbi.nlm.nih.gov/gene/?term=YE2841 YE2842 YE2842 tam tam 3090075 3090851 + putative trans-aconitate methyltransferase gene gene2786 http://www.ncbi.nlm.nih.gov/gene/?term=YE2842 YE2843 YE2843 dps dps 3091166 3091675 + putative DNA-binding protein gene gene2787 http://www.ncbi.nlm.nih.gov/gene/?term=YE2843 YE2844 YE2844 YE2844 3091792 3092058 + DksA/TraR C4-type zinc finger protein Similar to Pseudomonas aeruginosa hypothetical protein PA4870 SWALL:Q9HUU3 (EMBL:AE004900) (88 aa) fasta scores: E(): 9.8e-22%2C 65.9 38d in 88 aa%2C and to Salmonella typhimurium putative DnaK suppressor protein STM0825 SWALL:Q8ZQN5 (EMBL:AE008734) (88 aa) fasta scores: E(): 1.8e-19%2C 62.5 38d in 88 aa gene gene2788 http://www.ncbi.nlm.nih.gov/gene/?term=YE2844 YE2845 YE2845 glnH glnH 3092445 3093188 + putative glutamine-binding periplasmic protein gene gene2789 http://www.ncbi.nlm.nih.gov/gene/?term=YE2845 YE2846 YE2846 glnP glnP 3093255 3093911 + putative glutamine transport system permease gene gene2790 http://www.ncbi.nlm.nih.gov/gene/?term=YE2846 YE2847 YE2847 glnQ glnQ 3093908 3094630 + putative glutamine transport ATP-binding protein gene gene2791 http://www.ncbi.nlm.nih.gov/gene/?term=YE2847 YE2848 YE2848 YE2848 3094913 3096145 - putative chemotactic transducer gene gene2792 http://www.ncbi.nlm.nih.gov/gene/?term=YE2848 YE2849 YE2849 YE2849 3096772 3097779 - conserved hypothetical protein gene gene2793 http://www.ncbi.nlm.nih.gov/gene/?term=YE2849 YE2850 YE2850 YE2850 3097906 3098547 + conserved hypothetical protein Similar to Ralstonia solanacearum hypothetical protein RSC1820 or RS04248 SWALL:Q8XYD8 (EMBL:AL646066) (207 aa) fasta scores: E(): 1.6e-42%2C 53.62 38d in 207 aa%2Cand to Agrobacterium tumefaciens hypothetical protein ATU1743 or AGR_C_3198 SWALL:Q8UEL4 (EMBL:AE009130) (205 aa) fasta scores: E(): 1.7e-31%2C 47.26 38d in 201 aa gene gene2794 http://www.ncbi.nlm.nih.gov/gene/?term=YE2850 YE2851 YE2851 YE2851 3098674 3098934 + putative exported protein gene gene2795 http://www.ncbi.nlm.nih.gov/gene/?term=YE2851 YE2852 YE2852 YE2852 3099086 3100948 - putative peptidase Similar to Vibrio cholerae putative peptidase VC1983 SWALL:Q9KQL5 (EMBL:AE004273) (615 aa) fasta scores: E(): 2.9e-129%2C 52.95 38d in 610 aa. Internal region is similar to the C-terminal region of Escherichia coli peptidyl-dipeptidase Dcp SWALL:DCP_ECOLI (SWALL:P24171) (680 aa) fasta scores: E(): 0.072%2C 23.52 38d in 425 aa gene gene2796 http://www.ncbi.nlm.nih.gov/gene/?term=YE2852 YE2853 YE2853 ybiB ybiB 3101167 3102147 - putative glycosyl transferase gene gene2797 http://www.ncbi.nlm.nih.gov/gene/?term=YE2853 YE2854 YE2854 aqpZ aqpZ 3102357 3103061 - aquaporin Z Similar to Escherichia coli aquaporin Z AqpZ or BniP SWALL:AQPZ_ECOLI (SWALL:P48838) (231 aa) fasta scores: E(): 6.9e-55%2C 68.44 38d in 225 aa%2C and to Pseudomonas aeruginosa aquaporin Z PA4034 SWALL:Q9HWZ3 (EMBL:AE004820) (229 aa) fasta scores: E(): 3.5e-56%2C70.08 38d in 224 aa gene gene2798 http://www.ncbi.nlm.nih.gov/gene/?term=YE2854 YE2855 YE2855 dinG dinG 3103372 3105555 - putative ATP-dependent helicase DinG gene gene2799 http://www.ncbi.nlm.nih.gov/gene/?term=YE2855 YE2856 YE2856 ompC2 ompC2 3105995 3107110 + outer membrane protein C2 gene gene2800 http://www.ncbi.nlm.nih.gov/gene/?term=YE2856 YE2857 YE2857 YE2857 3107234 3108544 - putative exported protein Similar to Yersinia pestis putative exported protein YPO3473 SWALL:Q8ZBE3 (EMBL:AJ414157) (408 aa) fasta scores: E(): 2.5e-43%2C 33.67 38d in 392 aa. C-terminal region is similar to Yersinia pestis hypothetical protein YPO3468 SWALL:Q8ZBE8 (EMBL:AJ414157) (388 aa) fasta scores: E(): 1.2e-44%2C 36.03 38d in 358 aa gene gene2801 http://www.ncbi.nlm.nih.gov/gene/?term=YE2857 YE2858 YE2858 YE2858 3108825 3109715 + putative membrane protein gene gene2802 http://www.ncbi.nlm.nih.gov/gene/?term=YE2858 YE2859 YE2859 YE2859 3109970 3110884 - LysR family transcription regulatory protein Similar to Pseudomonas aeruginosa probable transcriptional regulator PA3565 SWALL:Q9HY52 (EMBL:AE004777) (306 aa) fasta scores: E(): 7.8e-59%2C52.72 38d in 294 aa%2C and to Vibrio cholerae LysR family transcriptional regulator VCA0635 SWALL:Q9KLV6 (EMBL:AE004393) (313 aa) fasta scores: E(): 3.5e-42%2C40.74 38d in 297 aa gene gene2803 http://www.ncbi.nlm.nih.gov/gene/?term=YE2859 YE2860 YE2860 YE2860 3110994 3111740 + putative short chain dehydrogenase Similar to Rhizobium loti probable acyl-carrier protein reductase MLR2047 SWALL:Q98J89 (EMBL:AP002998) (242 aa) fasta scores: E(): 7.9e-23%2C 38.81 38d in 237 aa%2Cand to Rhizobium leguminosarum putative short-chain dehydrogenase SWALL:Q93E09 (EMBL:AF372655) (245 aa) fasta scores: E(): 5.3e-20%2C 36.05 38d in 233 aa gene gene2804 http://www.ncbi.nlm.nih.gov/gene/?term=YE2860 YE2861 YE2861 YE2861 3111996 3112799 - hypothetical protein Poor database matches. C-terminus is similar to the C-terminal region of Pseudomonas aeruginosa hypothetical protein PA101 SWALL:Q9HU82 (EMBL:AE004923) (265 aa) fasta scores: E(): 9.9e-23%2C 35.45 38d in 220 aa. N-terminus is similar to the C-terminal region of Rhizobium loti hypothetical protein MLL1215 SWALL:Q98L21 (EMBL:AP002996) (275 aa) fasta scores: E(): 2.3e-07%2C 35 38d in 240 aa gene gene2805 http://www.ncbi.nlm.nih.gov/gene/?term=YE2861 YE2862 YE2862 YE2862 3112831 3113559 - putative ABC transport integral membrane subunit gene gene2806 http://www.ncbi.nlm.nih.gov/gene/?term=YE2862 YE2863 YE2863 YE2863 3113658 3114602 - putative ABC transport ATP-binding subunit gene gene2807 http://www.ncbi.nlm.nih.gov/gene/?term=YE2863 YE2864 YE2864 YE2864 3114599 3115753 - putative ABC transport integral membrane subunit gene gene2808 http://www.ncbi.nlm.nih.gov/gene/?term=YE2864 YE2865 YE2865 YE2865 3115862 3116794 - putative substrate-binding transport protein gene gene2809 http://www.ncbi.nlm.nih.gov/gene/?term=YE2865 YE2866 YE2866 YE2866 3117162 3118220 - putative fatty acid desaturase Similar to Pseudomonas aeruginosa hypothetical protein PA5102 SWALL:Q9HU81 (EMBL:AE004923) (312 aa) fasta scores: E(): 1e-50%2C 44.9 38d in 314 aa%2C and to Rhizobium loti hypothetical protein MLL1216 mll1216 SWALL:Q98L20 (EMBL:AP002996) (340 aa) fasta scores: E(): 8.6e-30%2C32.48 38d in 314 aa gene gene2810 http://www.ncbi.nlm.nih.gov/gene/?term=YE2866 YE2867 YE2867 YE2867 3118377 3119507 - conserved hypothetical protein gene gene2811 http://www.ncbi.nlm.nih.gov/gene/?term=YE2867 YE2868 YE2868 YE2868 3119899 3120753 + putative sulfurtransferase gene gene2812 http://www.ncbi.nlm.nih.gov/gene/?term=YE2868 YE2869 YE2869 YE2869 3120760 3121458 - putative ABC transport ATP-binding subunit gene gene2813 http://www.ncbi.nlm.nih.gov/gene/?term=YE2869 YE2870 YE2870 YE2870 3121586 3122422 - putative ABC transport ATP-binding subunit gene gene2814 http://www.ncbi.nlm.nih.gov/gene/?term=YE2870 YE2871 YE2871 YE2871 3122419 3123495 - putative Branched-chain amino acid transport system%2C permease component gene gene2815 http://www.ncbi.nlm.nih.gov/gene/?term=YE2871 YE2872 YE2872 YE2872 3123495 3125096 - putative Branched-chain amino acid transport system%2C permease component gene gene2816 http://www.ncbi.nlm.nih.gov/gene/?term=YE2872 YE2873 YE2873 YE2873 3125172 3126440 - putative substrate-binding periplasmic transport protein gene gene2817 http://www.ncbi.nlm.nih.gov/gene/?term=YE2873 YE2874 YE2874 YE2874 3126784 3127254 - conserved hypothetical protein gene gene2818 http://www.ncbi.nlm.nih.gov/gene/?term=YE2874 YE2875 YE2875 YE2875 3127508 3128413 - putative ABC transport membrane permease gene gene2819 http://www.ncbi.nlm.nih.gov/gene/?term=YE2875 YE2876 YE2876 YE2876 3128413 3129216 - putative ABC transport membrane permease gene gene2820 http://www.ncbi.nlm.nih.gov/gene/?term=YE2876 YE2877 YE2877 YE2877 3129345 3130274 - putative substrate-binding periplasmic transport protein gene gene2821 http://www.ncbi.nlm.nih.gov/gene/?term=YE2877 YE2878 YE2878 YE2878 3130311 3131147 - putative ABC transport ATP-binding subunit gene gene2822 http://www.ncbi.nlm.nih.gov/gene/?term=YE2878 YE2879 YE2879 YE2879 3131344 3131619 - putative membrane protein gene gene2823 http://www.ncbi.nlm.nih.gov/gene/?term=YE2879 YE2880 YE2880 YE2880 3131747 3132850 - conserved hypothetical protein gene gene2824 http://www.ncbi.nlm.nih.gov/gene/?term=YE2880 YE2881 YE2881 YE2881 3133227 3133568 + conserved hypothetical protein gene gene2825 http://www.ncbi.nlm.nih.gov/gene/?term=YE2881 YE2882 YE2882 cyaB cyaB 3133632 3134171 - adenylate cyclase 2 gene gene2826 http://www.ncbi.nlm.nih.gov/gene/?term=YE2882 YE2883 YE2883 dld dld 3134372 3136084 + D-lactate dehydrogenase gene gene2827 http://www.ncbi.nlm.nih.gov/gene/?term=YE2883 YE2884 YE2884 pbpG pbpG 3136432 3137367 - penicillin-binding protein 7 precursor gene gene2828 http://www.ncbi.nlm.nih.gov/gene/?term=YE2884 YE2885 YE2885 YE2885 3137850 3138482 + conserved hypothetical protein Poor database matches. Similar to Salmonella typhi hypothetical protein O211 SWALL:Q93RR8 (EMBL:AJ313032) (211 aa) fasta scores: E(): 3.4e-45%2C 57.07 38d in 205 aa gene gene2829 http://www.ncbi.nlm.nih.gov/gene/?term=YE2885 YE2886 YE2886 YE2886 3138551 3139489 - conserved hypothetical protein gene gene2830 http://www.ncbi.nlm.nih.gov/gene/?term=YE2886 YE2888 YE2888 YE2888 3139640 3139975 - transposase for insertion sequence element IS1665 Similar to the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 5.9e-54%2C 88.59 id in 149 aa%2C and to Shigella flexneri IS4 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 5.9e-54%2C88.59 38d in 149 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences. gene gene2831 http://www.ncbi.nlm.nih.gov/gene/?term=YE2888 YE2889 YE2889 rhlE rhlE 3140549 3141904 - putative ATP-dependent RNA helicase Similar to Escherichia coli putative ATP-dependent RNA helicase RhlE SWALL:RHLE_ECOLI (SWALL:P25888) (454 aa) fasta scores: E(): 7.4e-118%2C 79.33 38d in 450 aa. Highly similar to Yersinia pestis probable ATP-dependent RNA helicase RhlE SWALL:Q93AA5 (EMBL:AF426171) (421 aa) fasta scores: E(): 4.8e-139%2C 99.05 38d in 421 aa. CDS is extended at the C-terminus in comparison to the Y. pestis protein gene gene2832 http://www.ncbi.nlm.nih.gov/gene/?term=YE2889 YE2890 YE2890 YE2890 3142308 3143015 + TetR family transcription regulatory protein Similar to Pseudomonas putida regulatory protein PsrA SWALL:Q9EX90 (EMBL:AJ293485) (237 aa) fasta scores: E(): 0.00049%2C 26.51 38d in 215 aa%2C and to Yersinia pestis putative transcription regulator YbiH SWALL:Q93AA6 (EMBL:AF426171) (236 aa) fasta scores: E(): 6.2e-71%2C82.47 38d in 234 aa gene gene2833 http://www.ncbi.nlm.nih.gov/gene/?term=YE2890 YE2891 YE2891 YE2891 3143202 3144188 + HlyD family secretion protein Similar to Yersinia pestis hypothetical membrane protein ECS0873 SWALL:Y873_YERPE (SWALL:Q93AA7) (328 aa) fasta scores: E(): 6.9e-103%2C 90.82 38d in 327 aa%2C and to Salmonella typhi hypothetical membrane protein STY0853 SWALL:YBHG_SALTI (SWALL:Q8Z879) (331 aa) fasta scores: E(): 1.1e-74%2C 65.94 38d in 323 aa gene gene2834 http://www.ncbi.nlm.nih.gov/gene/?term=YE2891 YE2892 YE2892 YE2892 3144202 3145953 + putative ABC transporter ATP-binding protein Similar to Yersinia pestis putative ABC transporter ElsE SWALL:Q93AA8 (EMBL:AF426171) (580 aa) fasta scores: E(): 1.2e-180%2C 91.55 38d in 580 aa%2C and to Escherichia coli hypothetical ABC transporter ATP-binding protein YbhF SWALL:YBHF_ECOLI (SWALL:P75776) (578 aa) fasta scores: E(): 5.9e-146%2C 75.08 38d in 574 aa gene gene2835 http://www.ncbi.nlm.nih.gov/gene/?term=YE2892 YE2893 YE2893 YE2893 3145950 3147140 + putative membrane protein Similar to Yersinia pestis hypothetical protein ElsD SWALL:Q93AA9 (EMBL:AF426171) (419 aa) fasta scores: E(): 4.8e-129%2C 91.21 38d in 387 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative ABC superfamily STM0816 or STY0851 SWALL:Q8XGS9 (EMBL:AE008733) (376 aa) fasta scores: E(): 3.3e-107%2C 79.3 38d in 372 aa. CDS is extended at the N-terminus in comparison to the S. typhi protein and truncated in comparison to the Y. pestis protein. Possible alternative translational start site gene gene2836 http://www.ncbi.nlm.nih.gov/gene/?term=YE2893 YE2894 YE2894 YE2894 3147174 3148280 + putative membrane protein Similar to Yersinia pestis hypothetical protein YbhR SWALL:Q93AB1 (EMBL:AF426171) (368 aa) fasta scores: E(): 2.7e-128%2C 96.46 38d in 368 aa%2C and to Escherichia coli hypothetical protein YbhR SWALL:YBHR_ECOLI (SWALL:P75774) (368 aa) fasta scores: E(): 4.1e-114%2C85.28 38d in 367 aa gene gene2837 http://www.ncbi.nlm.nih.gov/gene/?term=YE2894 YE2895 YE2895 YE2895 3148597 3149307 - putative membrane protein gene gene2838 http://www.ncbi.nlm.nih.gov/gene/?term=YE2895 YE2896 YE2896 moaE moaE 3149451 3149906 - molybdopterin [mpt] converting factor%2C subunit 2 gene gene2839 http://www.ncbi.nlm.nih.gov/gene/?term=YE2896 YE2897 YE2897 moaD moaD 3149906 3150151 - molybdopterin [mpt] converting factor%2C subunit 1 gene gene2840 http://www.ncbi.nlm.nih.gov/gene/?term=YE2897 YE2898 YE2898 moaC moaC 3150148 3150627 - molybdenum cofactor biosynthesis protein C gene gene2841 http://www.ncbi.nlm.nih.gov/gene/?term=YE2898 YE2899 YE2899 moaA moaA 3150659 3151639 - molybdenum cofactor biosynthesis protein A gene gene2842 http://www.ncbi.nlm.nih.gov/gene/?term=YE2899 YE2900 YE2900 YE2900 3152092 3153015 + conserved hypothetical protein gene gene2843 http://www.ncbi.nlm.nih.gov/gene/?term=YE2900 YE2901 YE2901 YE2901 3153030 3153278 - conserved hypothetical protein gene gene2844 http://www.ncbi.nlm.nih.gov/gene/?term=YE2901 YE2902 YE2902 uvrB uvrB 3153347 3155359 - excinuclease ABC subunit B gene gene2845 http://www.ncbi.nlm.nih.gov/gene/?term=YE2902 YE2903 YE2903 YE2903 3156324 3157031 + putative amino acid transporter gene gene2846 http://www.ncbi.nlm.nih.gov/gene/?term=YE2903 YE2904 YE2904 bioD bioD 3157143 3157790 - dethiobiotin synthetase gene gene2847 http://www.ncbi.nlm.nih.gov/gene/?term=YE2904 YE2905 YE2905 bioC bioC 3157849 3158595 - biotin synthesis protein BioC gene gene2848 http://www.ncbi.nlm.nih.gov/gene/?term=YE2905 YE2906 YE2906 bioF bioF 3158645 3159796 - 8-amino-7-oxononanoate synthase gene gene2849 http://www.ncbi.nlm.nih.gov/gene/?term=YE2906 YE2907 YE2907 bioB bioB 3159796 3160848 - biotin synthase gene gene2850 http://www.ncbi.nlm.nih.gov/gene/?term=YE2907 YE2908 YE2908 bioA bioA 3160948 3162225 + adenosylmethionine-8-amino-7-oxononanoate aminotransferase gene gene2851 http://www.ncbi.nlm.nih.gov/gene/?term=YE2908 YE2909 YE2909 YE2909 3162343 3163344 - conserved hypothetical protein gene gene2852 http://www.ncbi.nlm.nih.gov/gene/?term=YE2909 YE2910 YE2910 YE2910 3163758 3164579 + conserved hypothetical protein gene gene2853 http://www.ncbi.nlm.nih.gov/gene/?term=YE2910 YE2911 YE2911 modC modC 3164739 3165803 - molybdenum transport ATP-binding protein ModC gene gene2854 http://www.ncbi.nlm.nih.gov/gene/?term=YE2911 YE2912 YE2912 modB modB 3165797 3166492 - molybdenum transport system permease protein ModB gene gene2855 http://www.ncbi.nlm.nih.gov/gene/?term=YE2912 YE2913 YE2913 modA modA 3166492 3167268 - molybdate-binding periplasmic protein precursor gene gene2856 http://www.ncbi.nlm.nih.gov/gene/?term=YE2913 YE2913A YE2913A YE2913A 3167485 3167625 - putative membrane protein Similar to Yersinia pestis putative membrane protein Ypo1144 or y3038 SWALL:Q8ZGX9 (EMBL:AJ414146) (50 aa) fasta scores: E(): 6.1e-14%2C 84.78 38d in 46 aa%2C and to Escherichia coli%2C Escherichia coli O6%2C Escherichia coli O157:H7%2C and Shigella flexneri hypothetical protein ybht precursor ybht or b0762 or c0838 or z0932 or ecs0790 or sf0542 SWALL:YBHT_ECOLI (SWALL:P75759) (49 aa) fasta scores: E(): 2.1e-10%2C 80 38d in 40 aa gene gene2857 http://www.ncbi.nlm.nih.gov/gene/?term=YE2913A YE2914 YE2914 modE modE 3167860 3168651 + molybdenum transport protein ModE gene gene2858 http://www.ncbi.nlm.nih.gov/gene/?term=YE2914 YE2915 YE2915 modF modF 3168942 3170435 + putative molybdenum transport ATP-binding protein modF gene gene2859 http://www.ncbi.nlm.nih.gov/gene/?term=YE2915 YE2916 YE2916 YE2916 3170637 3171455 + putative membrane protein gene gene2860 http://www.ncbi.nlm.nih.gov/gene/?term=YE2916 YE2917 YE2917 galE galE 3171753 3172769 + UDP-glucose 4-epimerase gene gene2861 http://www.ncbi.nlm.nih.gov/gene/?term=YE2917 YE2918 YE2918 galT galT 3172779 3173885 + galactose-1-phosphate uridylyltransferase gene gene2862 http://www.ncbi.nlm.nih.gov/gene/?term=YE2918 YE2919 YE2919 galK galK 3173885 3175036 + galactokinase gene gene2863 http://www.ncbi.nlm.nih.gov/gene/?term=YE2919 YE2920 YE2920 galM galM 3175030 3176094 + aldose 1-epimerase Similar to Escherichia coli aldose 1-epimerase GalM SWALL:GALM_ECOLI (SWALL:P40681) (346 aa) fasta scores: E(): 3.4e-86%2C 62.83 38d in 339 aa%2C and to Salmonella typhimurium galactose-1-epimerase STM0773 SWALL:Q8ZQS1 (EMBL:AE008731) (346 aa) fasta scores: E(): 2e-84%2C 61.53 id in 338 aa gene gene2864 http://www.ncbi.nlm.nih.gov/gene/?term=YE2920 YE2921 YE2921 psiF psiF 3176269 3176604 + putative starvation-inducible protein gene gene2865 http://www.ncbi.nlm.nih.gov/gene/?term=YE2921 YE2922 YE2922 YE2922 3176908 3178587 + putative protease No significant database matches to the full length CDS. N-terminal region is similar to Bacillus licheniformis extracellular alkaline proteinase%2Csubtilisin DY Apr SWALL:SUBD_BACLI (SWALL:P00781) (274 aa) fasta scores: E(): 5.8e-15%2C 34.23 38d in 260 aa gene gene2866 http://www.ncbi.nlm.nih.gov/gene/?term=YE2922 YE2923 YE2923 nucA nucA 3178753 3179604 + DNA/RNA non-specific endonuclease Similar to Serratia marcescens nuclease precursor NucA or Nuc SWALL:NUCA_SERMA (SWALL:P13717) (266 aa) fasta scores: E(): 5.5e-55%2C 60.16 38d in 241 aa%2C and to Salmonella typhimurium putative DNA/RNA non-specific endonuclease STM1330 SWALL:Q8ZPT1 (EMBL:AE008757) (284 aa) fasta scores: E(): 1.4e-67%2C 63.7 38d in 281 aa gene gene2867 http://www.ncbi.nlm.nih.gov/gene/?term=YE2923 YE2924 YE2924 gpmA gpmA 3179811 3180563 + phosphoglycerate mutase 1 gene gene2868 http://www.ncbi.nlm.nih.gov/gene/?term=YE2924 YE2925 YE2925 aroG aroG 3180666 3181748 - phospho-2-dehydro-3-deoxyheptonate aldolase%2Cphe-sensitive gene gene2869 http://www.ncbi.nlm.nih.gov/gene/?term=YE2925 YE2926 YE2926 YE2926 3181963 3182895 + putative cation transport protein gene gene2870 http://www.ncbi.nlm.nih.gov/gene/?term=YE2926 YE2927 YE2927 pnuC pnuC 3182971 3183699 - intergral membrane NMN transport protein PnuC gene gene2871 http://www.ncbi.nlm.nih.gov/gene/?term=YE2927 YE2928 YE2928 nadA nadA 3183947 3185008 - quinolinate synthetase A gene gene2872 http://www.ncbi.nlm.nih.gov/gene/?term=YE2928 YE2930 YE2930 YE2930 3186154 3186963 - putative exported protein gene gene2877 http://www.ncbi.nlm.nih.gov/gene/?term=YE2930 YE2931 YE2931 pal pal 3186973 3187479 - peptidoglycan-associated lipoprotein Pal gene gene2878 http://www.ncbi.nlm.nih.gov/gene/?term=YE2931 YE2932 YE2932 tolB tolB 3187528 3188820 - TolB colicin import protein gene gene2879 http://www.ncbi.nlm.nih.gov/gene/?term=YE2932 YE2933 YE2933 tolA tolA 3188940 3190100 - TolA colicin import membrane protein Similar to Escherichia coli colicin import membrane protein TolA or Cim or ExcC or Lky SWALL:TOLA_ECOLI (SWALL:P19934) (421 aa) fasta scores: E(): 3e-26%2C 58.39 id in 423 aa%2C and to Yersinia pestis TolA colicin import membrane protein YPO1123 SWALL:Q8ZGZ2 (EMBL:AJ414146) (388 aa) fasta scores: E(): 4.9e-76%2C 90.97 38d in 388 aa. Contains coiled-coiled rich region%2C residues 80 to 246 gene gene2880 http://www.ncbi.nlm.nih.gov/gene/?term=YE2933 YE2934 YE2934 tolR tolR 3190197 3190625 - TolR colicin import membrane protein gene gene2881 http://www.ncbi.nlm.nih.gov/gene/?term=YE2934 YE2935 YE2935 tolQ tolQ 3190638 3191324 - TolQ colicin import protein gene gene2882 http://www.ncbi.nlm.nih.gov/gene/?term=YE2935 YE2936 YE2936 YE2936 3191324 3191725 - conserved hypothetical protein gene gene2883 http://www.ncbi.nlm.nih.gov/gene/?term=YE2936 YE2937 YE2937 YE2937 3191873 3192205 - conserved hypothetical protein gene gene2884 http://www.ncbi.nlm.nih.gov/gene/?term=YE2937 YE2938 YE2938 cydB cydB 3192297 3193436 - cytochrome D ubiquinol oxidase subunit II gene gene2885 http://www.ncbi.nlm.nih.gov/gene/?term=YE2938 YE2939 YE2939 cydA cydA 3193451 3195019 - cytochrome D ubiquinol oxidase subunit I gene gene2886 http://www.ncbi.nlm.nih.gov/gene/?term=YE2939 YE2940 YE2940 YE2940 3195608 3197506 + putative 5'-nucleotidase Similar to Vibrio cholerae putative 2`%2C3`-cyclic-nucleotide 2`-phosphodiesterase VC2416 SWALL:Q9KPF2 (EMBL:AE004311) (634 aa) fasta scores: E(): 3.1e-163%2C 68.97 38d in 635 aa%2C and to Vibrio parahaemolyticus 5'-nucleotidase precursor NutA SWALL:5NTD_VIBPA (SWALL:P22848) (560 aa) fasta scores: E(): 1.9e-11%2C 25.86 38d in 518 aa gene gene2887 http://www.ncbi.nlm.nih.gov/gene/?term=YE2940 YE2941 YE2941 sucD sucD 3197578 3198456 - succinyl-CoA synthetase alpha chain gene gene2888 http://www.ncbi.nlm.nih.gov/gene/?term=YE2941 YE2942 YE2942 sucC sucC 3198456 3199622 - succinyl-CoA synthetase beta chain gene gene2889 http://www.ncbi.nlm.nih.gov/gene/?term=YE2942 YE2943 YE2943 sucB sucB 3199736 3200959 - dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex gene gene2890 http://www.ncbi.nlm.nih.gov/gene/?term=YE2943 YE2944 YE2944 sucA sucA 3200988 3203795 - 2-oxoglutarate dehydrogenase E1 component gene gene2891 http://www.ncbi.nlm.nih.gov/gene/?term=YE2944 YE2945 YE2945 sdhB sdhB 3204090 3204806 - succinate dehydrogenase iron-sulfur protein gene gene2892 http://www.ncbi.nlm.nih.gov/gene/?term=YE2945 YE2946 YE2946 sdhA sdhA 3204860 3206626 - succinate dehydrogenase flavoprotein subunit gene gene2893 http://www.ncbi.nlm.nih.gov/gene/?term=YE2946 YE2947 YE2947 sdhD sdhD 3206627 3206974 - succinate dehydrogenase hydrophobic membrane anchor protein gene gene2894 http://www.ncbi.nlm.nih.gov/gene/?term=YE2947 YE2948 YE2948 sdhC sdhC 3206968 3207357 - succinate dehydrogenase cytochrome b-556 subunit gene gene2895 http://www.ncbi.nlm.nih.gov/gene/?term=YE2948 YE2949 YE2949 gltA gltA 3208007 3209287 + citrate synthase GltA gene gene2896 http://www.ncbi.nlm.nih.gov/gene/?term=YE2949 YE2950 YE2950 pcp pcp 3209353 3210000 - putative pyrrolidone-carboxylate peptidase gene gene2897 http://www.ncbi.nlm.nih.gov/gene/?term=YE2950 YE2951 YE2951 YE2951 3210009 3211028 - putative membrane protein gene gene2898 http://www.ncbi.nlm.nih.gov/gene/?term=YE2951 YE2952 YE2952 YE2952 3211025 3211756 - putative membrane protein gene gene2899 http://www.ncbi.nlm.nih.gov/gene/?term=YE2952 YE2953 YE2953 YE2953 3211847 3212584 - conserved hypothetical protein gene gene2900 http://www.ncbi.nlm.nih.gov/gene/?term=YE2953 YE2954 YE2954 YE2954 3212581 3213531 - conserved hypothetical protein gene gene2901 http://www.ncbi.nlm.nih.gov/gene/?term=YE2954 YE2955 YE2955 YE2955 3214601 3215344 - conserved hypothetical protein gene gene2903 http://www.ncbi.nlm.nih.gov/gene/?term=YE2955 YE2955A YE2955A YE2955A 3213525 3214181 - conserved hypothetical protein Similar to many of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YbgJ or b0711 or z0862 or ecs0736 SWALL:YBGJ_ECOLI (SWALL:P75744) (218 aa) fasta scores: E(): 9.9e-64%2C 72.93 38d in 218 aa and to Yersinia pestis putative carboxylase y1273 SWALL:Q8D108 (EMBL:AE013730) (181 aa) fasta scores: E(): 1.3e-64%2C 91.71 38d in 181 aa gene gene2902 http://www.ncbi.nlm.nih.gov/gene/?term=YE2955A YE2956 YE2956 YE2956 3215377 3216342 - putative 3'%2C5'-cyclic-nucleotide phosphodiesterase gene gene2904 http://www.ncbi.nlm.nih.gov/gene/?term=YE2956 YE2957 YE2957 phrB phrB 3216448 3217893 - putative deoxyribodipyrimidine photolyase gene gene2905 http://www.ncbi.nlm.nih.gov/gene/?term=YE2957 YE2958 YE2958 YE2958 3217897 3218382 - conserved hypothetical protein gene gene2906 http://www.ncbi.nlm.nih.gov/gene/?term=YE2958 YE2959 YE2959 ybfA ybfA 3218478 3218684 - putative membrane protein gene gene2907 http://www.ncbi.nlm.nih.gov/gene/?term=YE2959 YE2960 YE2960 kdpA kdpA 3219258 3220946 + putative potassium-transporting ATPase A chain gene gene2908 http://www.ncbi.nlm.nih.gov/gene/?term=YE2960 YE2961 YE2961 kdpB kdpB 3221042 3223108 + putative potassium-transporting ATPase B chain gene gene2909 http://www.ncbi.nlm.nih.gov/gene/?term=YE2961 YE2962 YE2962 kdpC kdpC 3223244 3223846 + putative potassium-transporting ATPase C chain gene gene2910 http://www.ncbi.nlm.nih.gov/gene/?term=YE2962 YE2963 YE2963 kdpD kdpD 3223856 3226555 + two-component regulatory protein sensor kinase KdpD gene gene2911 http://www.ncbi.nlm.nih.gov/gene/?term=YE2963 YE2964 YE2964 kdpE kdpE 3226714 3227241 + two-component regulatory protein response regulator KdpE gene gene2912 http://www.ncbi.nlm.nih.gov/gene/?term=YE2964 YE2965 YE2965 YE2965 3227334 3227762 + putative membrane protein gene gene2913 http://www.ncbi.nlm.nih.gov/gene/?term=YE2965 YE2966 YE2966 YE2966 3227908 3229359 + putative hemolysin No significant database matches to the full length CDS. Internal region is similar to the C-terminal region of Actinobacillus pleuropneumoniae RTX-III toxin determinant A from serotype 2 ApxIIIA or ClyIIIA or RtxA or PtxA SWALL:RT31_ACTPL (SWALL:P55130) (1049 aa) fasta scores: E(): 9.5e-13%2C 27.82 38d in 345 aa gene gene2914 http://www.ncbi.nlm.nih.gov/gene/?term=YE2966 YE2967 YE2967 pgm pgm 3229442 3231082 - phosphoglucomutase gene gene2915 http://www.ncbi.nlm.nih.gov/gene/?term=YE2967 YE2968 YE2968 seqA seqA 3231175 3231714 - putative negative regulator of replication initiation gene gene2916 http://www.ncbi.nlm.nih.gov/gene/?term=YE2968 YE2969 YE2969 YE2969 3231928 3232722 + conserved hypothetical protein gene gene2917 http://www.ncbi.nlm.nih.gov/gene/?term=YE2969 YE2970 YE2970 YE2970 3233066 3233353 + conserved hypothetical protein gene gene2918 http://www.ncbi.nlm.nih.gov/gene/?term=YE2970 YE2971 YE2971 YE2971 3233420 3235078 - putative methyl-accepting chemotaxis protein Similar to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 1.2e-66%2C 46.69 id in 559 aa%2C and to Yersinia pestis methyl-accepting chemotaxis protein YPO1675 SWALL:Q8ZFM2 (EMBL:AJ414149) (557 aa) fasta scores: E(): 1.1e-66%2C 46.16 38d in 574 aa gene gene2919 http://www.ncbi.nlm.nih.gov/gene/?term=YE2971 YE2972 YE2972 fldA fldA 3235301 3235828 + flavodoxin 1 gene gene2920 http://www.ncbi.nlm.nih.gov/gene/?term=YE2972 YE2973 YE2973 fur fur 3236197 3236643 + ferric uptake regulator gene gene2921 http://www.ncbi.nlm.nih.gov/gene/?term=YE2973 YE2974 YE2974 chb chb 3237040 3239715 - chitobiase precursor Similar to Serratia marcescens chitobiase precursor Chb SWALL:CHB_SERMA (SWALL:Q54468) (885 aa) fasta scores: E(): 0%2C 76.48 38d in 889 aa%2C and to Enterobacter sp N-acetyl-beta-D-glucosaminidase Nag1 SWALL:Q9ZN69 (EMBL:AB022786) (885 aa) fasta scores: E(): 0%2C 76.37 38d in 889 aa gene gene2922 http://www.ncbi.nlm.nih.gov/gene/?term=YE2974 YE2975 YE2975 YE2975 3239808 3240134 - putative lipoprotein Similar to Salmonella typhi putative lipoprotein STY0726 SWALL:Q8Z8F7 (EMBL:AL627267) (110 aa) fasta scores: E(): 4e-23%2C 58.33 38d in 108 aa%2C and to Salmonella typhimurium putative lipoprotein STM0688 SWALL:Q8ZQX4 (EMBL:AE008727) (110 aa) fasta scores: E(): 4.6e-23%2C58.33 38d in 108 aa gene gene2923 http://www.ncbi.nlm.nih.gov/gene/?term=YE2975 YE2976 YE2976 ybfM ybfM 3240195 3241598 - putative exported protein gene gene2924 http://www.ncbi.nlm.nih.gov/gene/?term=YE2976 YE2977 YE2977 glnS glnS 3242234 3243901 - glutaminyl-tRNA synthetase gene gene2925 http://www.ncbi.nlm.nih.gov/gene/?term=YE2977 YE2978 YE2978 nagE nagE 3244095 3246128 - pts system%2C N-acetylglucosamine-specific IIABC component gene gene2926 http://www.ncbi.nlm.nih.gov/gene/?term=YE2978 YE2979 YE2979 nagB nagB 3246499 3247299 + putative glucosamine-6-phosphate isomerase gene gene2927 http://www.ncbi.nlm.nih.gov/gene/?term=YE2979 YE2980 YE2980 nagA nagA 3247319 3248464 + putative N-acetylglucosamine-6-phosphate deacetylase gene gene2928 http://www.ncbi.nlm.nih.gov/gene/?term=YE2980 YE2981 YE2981 nagC nagC 3248478 3249701 + putative N-acetylglucosamine regulatory protein gene gene2929 http://www.ncbi.nlm.nih.gov/gene/?term=YE2981 YE2982 YE2982 nagD nagD 3249912 3250664 + putative N-acetylglucosamine metabolism protein gene gene2930 http://www.ncbi.nlm.nih.gov/gene/?term=YE2982 YE2983 YE2983 asnB asnB 3251009 3252673 + asparagine synthetase B gene gene2931 http://www.ncbi.nlm.nih.gov/gene/?term=YE2983 YE2984 YE2984 ubiF ubiF 3253760 3254941 - putative 2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase gene gene2938 http://www.ncbi.nlm.nih.gov/gene/?term=YE2984 YE2985 YE2985 miaB miaB 3255184 3256608 + putative tRNA-thiotransferase gene gene2939 http://www.ncbi.nlm.nih.gov/gene/?term=YE2985 YE2986 YE2986 YE2986 3256887 3257978 + conserved hypothetical protein gene gene2940 http://www.ncbi.nlm.nih.gov/gene/?term=YE2986 YE2987 YE2987 YE2987 3257975 3258448 + conserved hypothetical protein gene gene2941 http://www.ncbi.nlm.nih.gov/gene/?term=YE2987 YE2988 YE2988 ybeX ybeX 3258563 3259441 + putative membrane protein gene gene2942 http://www.ncbi.nlm.nih.gov/gene/?term=YE2988 YE2989 YE2989 cutE cutE 3259449 3261026 + putative apolipoprotein N-acyltransferase gene gene2943 http://www.ncbi.nlm.nih.gov/gene/?term=YE2989 YE2990 YE2990 YE2990 3261035 3261619 + conserved hypothetical protein Similar to Rhizobium loti hypothetical protein MLL0539 SWALL:Q98MK8 (EMBL:AP002995) (203 aa) fasta scores: E(): 5.2e-31%2C 46.89 38d in 177 aa%2C and to Caulobacter crescentus hypothetical protein CC2577 SWALL:Q9A580 (EMBL:AE005926) (204 aa) fasta scores: E(): 7.7e-27%2C 44.11 38d in 170 aa gene gene2944 http://www.ncbi.nlm.nih.gov/gene/?term=YE2990 YE2991 YE2991 glnH glnH 3262206 3263120 + putative amino acid-binding protein precursor gene gene2945 http://www.ncbi.nlm.nih.gov/gene/?term=YE2991 YE2992 YE2992 gltJ gltJ 3263298 3264038 + putative glutamate/aspartate transport system permease gene gene2946 http://www.ncbi.nlm.nih.gov/gene/?term=YE2992 YE2993 YE2993 gltK gltK 3264038 3264712 + putative glutamate/aspartate transport system permease gene gene2947 http://www.ncbi.nlm.nih.gov/gene/?term=YE2993 YE2994 YE2994 gltL gltL 3264709 3265437 + putative glutamate/aspartate transport ATP-binding protein gene gene2948 http://www.ncbi.nlm.nih.gov/gene/?term=YE2994 YE2995 YE2995 YE2995 3265493 3265975 - conserved hypothetical protein gene gene2949 http://www.ncbi.nlm.nih.gov/gene/?term=YE2995 YE2996 YE2996 leuS leuS 3266354 3268936 + leucyl-tRNA synthetase gene gene2950 http://www.ncbi.nlm.nih.gov/gene/?term=YE2996 YE2997 YE2997 rlpB rlpB 3268951 3269574 + rare lipoprotein B precursor gene gene2951 http://www.ncbi.nlm.nih.gov/gene/?term=YE2997 YE2998 YE2998 holA holA 3269571 3270605 + DNA polymerase III%2C delta subunit gene gene2952 http://www.ncbi.nlm.nih.gov/gene/?term=YE2998 YE2999 YE2999 nadD nadD 3270595 3271257 + putative nicotinate-nucleotide adenylyltransferase gene gene2953 http://www.ncbi.nlm.nih.gov/gene/?term=YE2999 YE3000 YE3000 YE3000 3271557 3271874 + conserved hypothetical protein gene gene2954 http://www.ncbi.nlm.nih.gov/gene/?term=YE3000 YE3001 YE3001 YE3001 3271878 3272348 + conserved hypothetical protein gene gene2955 http://www.ncbi.nlm.nih.gov/gene/?term=YE3001 YE3002 YE3002 pbpA pbpA 3272423 3274318 + penicillin-binding protein 2 gene gene2956 http://www.ncbi.nlm.nih.gov/gene/?term=YE3002 YE3003 YE3003 rodA rodA 3274355 3275467 + rod shape-determining protein gene gene2957 http://www.ncbi.nlm.nih.gov/gene/?term=YE3003 YE3004 YE3004 rlpA rlpA 3275477 3276574 + rare lipoprotein A precursor gene gene2958 http://www.ncbi.nlm.nih.gov/gene/?term=YE3004 YE3005 YE3005 dacA dacA 3276788 3277999 + putative penicillin-binding protein 5 gene gene2959 http://www.ncbi.nlm.nih.gov/gene/?term=YE3005 YE3006 YE3006 YE3006 3278148 3278411 + conserved hypothetical protein gene gene2960 http://www.ncbi.nlm.nih.gov/gene/?term=YE3006 YE3007 YE3007 lipB lipB 3278566 3279279 + lipoate-protein ligase B gene gene2961 http://www.ncbi.nlm.nih.gov/gene/?term=YE3007 YE3008 YE3008 lipA lipA 3279468 3280433 + lipoic acid synthetase gene gene2962 http://www.ncbi.nlm.nih.gov/gene/?term=YE3008 YE3009 YE3009 tatE tatE 3280576 3280791 - sec-independent protein translocase protein gene gene2963 http://www.ncbi.nlm.nih.gov/gene/?term=YE3009 YE3010 YE3010 adrA adrA 3280995 3282047 + putative diguanylate cyclase/phosphodiesterase domain 1 protein Similar to the C-terminal regions of Salmonella typhimurium putative diguanylate cyclase/phosphodiesterase domain 1 protein AdrA SWALL:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 8.9e-62%2C 47.67 38d in 344 aa%2C and Escherichia coli hypothetical protein YaiC SWALL:YAIC_ECOLI (SWALL:P21830) (371 aa) fasta scores: E(): 6.7e-64%2C 46.28 38d in 350 aa. CDS appears to be truncated at the N-terminus in comparison to orthologues. Possible pseudogene gene gene2964 http://www.ncbi.nlm.nih.gov/gene/?term=YE3010 YE3011 YE3011 crcB crcB 3282095 3282478 + putative membrane protein gene gene2965 http://www.ncbi.nlm.nih.gov/gene/?term=YE3011 YE3012 YE3012 cspE1 cspE1 3282778 3282987 - cold shock-like protein cspE1 Similar to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspE cspE or msmC or gicA or b0623 or z0769 or ecs0662 SWALL:CSPE_ECOLI (SWALL:P36997) (68 aa) fasta scores: E(): 4.5e-24%2C 91.17 id in 68 aa%2C and to Yersinia pestis putative cold shock protein cspE or ypo2595 SWALL:Q8ZDH3 (EMBL:AJ414153) (69 aa) fasta scores: E(): 9.2e-26%2C 97.1 38d in 69 aa%2C and to Vibrio cholerae hypothetical 7.5 kDa protein SWALL:AAC72388 (EMBL:AF098260) (69 aa) fasta scores: E(): 1.4e-24%2C 91.3 38d in 69 aa gene gene2966 http://www.ncbi.nlm.nih.gov/gene/?term=YE3012 YE3013 YE3013 YE3013 3283362 3283733 + conserved hypothetical protein gene gene2967 http://www.ncbi.nlm.nih.gov/gene/?term=YE3013 YE3014 YE3014 YE3014 3283919 3284530 - putative LuxR-family regulatory proteins gene gene2968 http://www.ncbi.nlm.nih.gov/gene/?term=YE3014 YE3015 YE3015 YE3015 3284883 3285848 + putative membrane protein gene gene2969 http://www.ncbi.nlm.nih.gov/gene/?term=YE3015 YE3016 YE3016 YE3016 3285999 3286643 - serine/threonine protein phosphatase Similar to Bacteriophage lambda serine/threonine protein phosphatase SWALL:PP_LAMBD (SWALL:P03772) (221 aa) fasta scores: E(): 3.3e-48%2C 56.74 38d in 215 aa%2C and to Escherichia coli serine/threonine protein phosphatase 1 PphA or PrpA SWALL:PRP1_ECOLI (SWALL:P55798) (218 aa) fasta scores: E(): 6.3e-42%2C 50.93 38d in 214 aa gene gene2970 http://www.ncbi.nlm.nih.gov/gene/?term=YE3016 YE3017 YE3017 YE3017 3286894 3287088 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein STY4108 SWALL:Q8Z2E1 (EMBL:AL627280) (68 aa) fasta scores: E(): 0.31%2C 34 38d in 50 aa%2C and to Yersinia pestis hypothetical protein YPO2590 SWALL:Q8ZDH8 (EMBL:AJ414153) (64 aa) fasta scores: E(): 2.5e-16%2C 82.54 38d in 63 aa gene gene2971 http://www.ncbi.nlm.nih.gov/gene/?term=YE3017 YE3018 YE3018 YE3018 3287435 3287722 + conserved hypothetical protein gene gene2972 http://www.ncbi.nlm.nih.gov/gene/?term=YE3018 YE3019 YE3019 YE3019 3287740 3289512 - putative ABC transport protein gene gene2973 http://www.ncbi.nlm.nih.gov/gene/?term=YE3019 YE3020 YE3020 YE3020 3290029 3291504 - putative lyase Similar to Pseudomonas aeruginosa hypothetical protein PA0254 SWALL:Q9I6N5 (EMBL:AE004463) (496 aa) fasta scores: E(): 7.4e-63%2C 35.23 38d in 491 aa. Weakly similar to Escherichia coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD SWALL:UBID_ECOLI (SWALL:P26615) (497 aa) fasta scores: E(): 1.5e-16%2C 26.17 38d in 470 aa gene gene2974 http://www.ncbi.nlm.nih.gov/gene/?term=YE3020 YE3021 YE3021 YE3021 3291534 3293129 - putative phenylalanine and histidine ammonia-lyase Similar to an internal region of Oryza sativa phenylalanine ammonia-lyase ZB8 SWALL:PAL2_ORYSA (SWALL:P53443) (710 aa) fasta scores: E(): 3.4e-28%2C 31.02 id in 506 aa%2C and to full length Streptomyces maritimus putative phenylalanine ammonia lyase EncP SWALL:Q9KHJ9 (EMBL:AF254925) (523 aa) fasta scores: E(): 1.6e-46%2C29.78 38d in 517 aa gene gene2975 http://www.ncbi.nlm.nih.gov/gene/?term=YE3021 YE3022 YE3022 YE3022 3293587 3294708 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YcfD SWALL:YCFD_ECOLI (SWALL:P27431) (373 aa) fasta scores: E(): 3.4e-107%2C 66.12 38d in 372 aa%2C and to Salmonella typhimurium putative cytoplasmic protein STM1229 SWALL:Q8ZPZ7 (EMBL:AE008753) (373 aa) fasta scores: E(): 3.5e-106%2C 63.97 38d in 372 aa gene gene2976 http://www.ncbi.nlm.nih.gov/gene/?term=YE3022 YE3023 YE3023 YE3023 3295097 3296053 - conserved hypothetical protein gene gene2977 http://www.ncbi.nlm.nih.gov/gene/?term=YE3023 YE3024 YE3024 copR copR 3296382 3297071 + transcriptional activator gene gene2978 http://www.ncbi.nlm.nih.gov/gene/?term=YE3024 YE3025 YE3025 YE3025 3297087 3298562 + putative two-component system sensor protein gene gene2979 http://www.ncbi.nlm.nih.gov/gene/?term=YE3025 YE3026 YE3026 YE3026 3298631 3298987 + putative exported protein No significant database matches to the full length CDS. N-terminus is similar to the N-terminal region of Yersinia pestis putative exported protein YPO1998 SWALL:Q8ZEZ8 (EMBL:AJ414151) (156 aa) fasta scores: E(): 4.8e-10%2C 41.59 38d in 113 aa. C-terminus is similar to an internal region of Brucella melitensis transcriptional regulator BMEII0800 SWALL:Q8YBT6 (EMBL:AE009714) (159 aa) fasta scores: E(): 5.3e-13%2C 55.55 38d in 81 aa gene gene2980 http://www.ncbi.nlm.nih.gov/gene/?term=YE3026 YE3027 YE3027 YE3027 3299086 3299850 + exported protein Similar to Xylella fastidiosa hypothetical protein XF1766 SWALL:Q9PCL2 (EMBL:AE003999) (260 aa) fasta scores: E(): 2e-47%2C 58.43 38d in 255 aa%2C and weakly similar to Rhizobium meliloti putative 4-carboxymuconolactone decarboxylase RA0292 or SMA0559 SWALL:Q930A6 (EMBL:AE007221) (259 aa) fasta scores: E(): 0.12%2C 25.37 id in 201 aa gene gene2981 http://www.ncbi.nlm.nih.gov/gene/?term=YE3027 YE3028 YE3028 YE3028 3299947 3301009 + putative exported protein (pseudogene) Poor database matches. Similar to Yersinia pestis putative exported protein YPO1997 SWALL:Q8ZEZ9 (EMBL:AJ414151) (357 aa) fasta scores: E(): 9.4e-120%2C81.51 38d in 357 aa. Contains a frameshifts after codons 105 and 309 pseudogene gene2982 http://www.ncbi.nlm.nih.gov/gene/?term=YE3028 YE3031 YE3031 YE3031 3301140 3301991 + putative aldo/keto reductase gene gene2983 http://www.ncbi.nlm.nih.gov/gene/?term=YE3031 YE3032 YE3032 YE3032 3302151 3302477 - hypothetical protein Similar to Yersinia pestis hypothetical protein DffD SWALL:Q93AB2 (EMBL:AF426171) (109 aa) fasta scores: E(): 8.8e-35%2C 78.7 38d in 108 aa%2C and to Bacillus halodurans hypothetical protein BH0200 SWALL:Q9KGB0 (EMBL:AP001507) (107 aa) fasta scores: E(): 0.53%2C 27.55 id in 98 aa gene gene2984 http://www.ncbi.nlm.nih.gov/gene/?term=YE3032 YE3033 YE3033 YE3033 3302712 3303623 + LysR family transcription regulatory protein Similar to Yersinia pestis putative transcriptional regulator SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 1.6e-101%2C 86.13 38d in 303 aa%2C and to Rhizobium loti probable transcriptional regulator MLR2579 SWALL:Q98I42 (EMBL:AP003000) (304 aa) fasta scores: E(): 6.3e-45%2C 45.76 38d in 295 aa gene gene2985 http://www.ncbi.nlm.nih.gov/gene/?term=YE3033 YE3034 YE3034 YE3034 3303626 3304741 - NADH:flavin oxidoreductase / NADH oxidase family protein Similar to Pseudomonas putida morphinone reductase MorB SWALL:Q51990 (EMBL:U37350) (377 aa) fasta scores: E(): 1e-64%2C 48.64 38d in 368 aa%2C and to Yersinia pestis morphinone reductase MorB SWALL:Q93AB5 (EMBL:AF426171) (369 aa) fasta scores: E(): 9.5e-113%2C 77.26 38d in 365 aa gene gene2986 http://www.ncbi.nlm.nih.gov/gene/?term=YE3034 YE3035 YE3035 YE3035 3305377 3305715 + conserved hypothetical protein gene gene2987 http://www.ncbi.nlm.nih.gov/gene/?term=YE3035 YE3036 YE3036 YE3036 3305700 3306347 + hypothetical protein No significant database matches to the full length CDS. C-terminal region is highly similar to Yersinia pestis hypothetical protein YPO2821 SWALL:Q8ZCY4 (EMBL:AJ414153) (115 aa) fasta scores: E(): 7.3e-41%2C97.39 38d in 115 aa gene gene2988 http://www.ncbi.nlm.nih.gov/gene/?term=YE3036 YE3037 YE3037 YE3037 3306442 3306741 + hypothetical protein (fragment) Poor database matches. Highly similar to the N-terminus of Yersinia pestis hypothetical protein YPO0875 SWALL:Q8ZHL6 (EMBL:AJ414145) (121 aa) fasta scores: E(): 1.4e-18%2C 79.16 38d in 72 aa pseudogene gene2989 http://www.ncbi.nlm.nih.gov/gene/?term=YE3037 YE3038 YE3038 int int 3306742 3306858 - integrase (fragment) Similar to the N-terminal regions of Escherichia coli integrase Int SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.6e-10%2C 70 38d in 40 aa%2C and Shigella flexneri integrase Int SWALL:Q9XCI7 (EMBL:AF141323) (394 aa) fasta scores: E(): 1.6e-10%2C 70 38d in 40 aa pseudogene gene2990 http://www.ncbi.nlm.nih.gov/gene/?term=YE3038 YE3039 YE3039 YE3039 3307405 3308364 + putative exported protein Similar to Salmonella typhimurium putative outer membrane protein STM1328 SWALL:Q8ZPT3 (EMBL:AE008757) (319 aa) fasta scores: E(): 5.5e-93%2C 71.87 38d in 320 aa%2C and to Salmonella typhi putative outer membrane protein STY1783 SWALL:Q8Z6H9 (EMBL:AL627271) (319 aa) fasta scores: E(): 5.5e-93%2C 71.87 38d in 320 aa gene gene2991 http://www.ncbi.nlm.nih.gov/gene/?term=YE3039 YE3040 YE3040 YE3040 3308773 3309072 + transposase for insertion element IS3 Similar to several transposases including: Escherichia coli transposase InsE for insertion sequence IS3a/b/c/d/e/fa/fb SWALL:INSE_ECOLI (SWALL:P77681) (102 aa) fasta scores: E(): 6.2e-26%2C 82.82 38d in 99 aa and to Salmonella enteritidis insertion sequence IS1230 SWALL:O34117 (EMBL:U91789) (177 aa) fasta scores: E(): 2.9e-11%2C 80.7 38d in 57 aa gene gene2992 http://www.ncbi.nlm.nih.gov/gene/?term=YE3040 YE3041 YE3041 YE3041 3309069 3309461 + transposase for insertion element IS3 (pseudogene) Similar in parts to many including: Escherichia coli TnP protein SWALL:Q93K84 (EMBL:X16664) (284 aa) fasta scores: E(): 4.9e-25%2C 40.49 38d in 284 aa and to Escherichia coli transposase insF for insertion sequence IS3fb SWALL:INF7_ECOLI (SWALL:Q9JMT3) (288 aa) fasta scores: E(): 1.1e-23%2C 63.2 38d in 125 aa. This CDS may have been subject to a large deletion event removing the central portion of the predicted product. gene gene2993 http://www.ncbi.nlm.nih.gov/gene/?term=YE3041 YE3042 YE3042 YE3042 3309489 3310058 - conserved hypothetical protein Similar to bacteriophage P27 hypothetical protein SWALL:Q8W610 (EMBL:AJ298298) (188 aa) fasta scores: E(): 1.5e-37%2C 56.21 38d in 185 aa%2C and to Escherichia coli hypothetical protein Orf-191A SWALL:Q9LA61 (EMBL:AF151091) (191 aa) fasta scores: E(): 1.1e-18%2C 36.87 38d in 179 aa gene gene2994 http://www.ncbi.nlm.nih.gov/gene/?term=YE3042 YE3043 YE3043 tnpA tnpA 3310600 3310932 + IS1329 transposase A Previously sequenced as Yersinia enterocolitica IS1329 transposase A Trp1329A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.8e-38%2C 100 38d in 110 aa. Also similar to Shigella dysenteriae transposase InsN for insertion sequence element IS911 SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 7.6e-13%2C 42.45 id in 106 aa gene gene2995 http://www.ncbi.nlm.nih.gov/gene/?term=YE3043 YE3044 YE3044 tnpB tnpB 3311022 3311771 + transposase B Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 1.4e-104%2C 100 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac1661 SWALL:AAM36528 (EMBL:AE011798) (272 aa) fasta scores: E(): 3.4e-37%2C 44.13 38d in 247 aa gene gene2996 http://www.ncbi.nlm.nih.gov/gene/?term=YE3044 YE3045 YE3045 folD folD 3312100 3312981 + putative FolD bifunctional protein gene gene2998 http://www.ncbi.nlm.nih.gov/gene/?term=YE3045 YE3046 YE3046 YE3046 3312981 3313193 + conserved hypothetical protein gene gene2999 http://www.ncbi.nlm.nih.gov/gene/?term=YE3046 YE3048 YE3048 cysS cysS 3313398 3314783 - cysteinyl-tRNA synthetase gene gene3000 http://www.ncbi.nlm.nih.gov/gene/?term=YE3048 YE3049 YE3049 ppiB ppiB 3314996 3315490 + peptidyl-prolyl cis-trans isomerase B gene gene3001 http://www.ncbi.nlm.nih.gov/gene/?term=YE3049 YE3050 YE3050 YE3050 3315501 3316223 + conserved hypothetical protein gene gene3002 http://www.ncbi.nlm.nih.gov/gene/?term=YE3050 YE3051 YE3051 purE purE 3316400 3316924 + phosphoribosylaminoimidazole carboxylase catalytic subunit PurE gene gene3003 http://www.ncbi.nlm.nih.gov/gene/?term=YE3051 YE3052 YE3052 purK purK 3316921 3317985 + phosphoribosylaminoimidazole carboxylase ATPase subunit PurK gene gene3004 http://www.ncbi.nlm.nih.gov/gene/?term=YE3052 YE3053 YE3053 ybbP ybbP 3318139 3320565 - putative permease gene gene3005 http://www.ncbi.nlm.nih.gov/gene/?term=YE3053 YE3054 YE3054 ybbA ybbA 3320562 3321248 - putative ABC transporter ATP-binding protein gene gene3006 http://www.ncbi.nlm.nih.gov/gene/?term=YE3054 YE3055 YE3055 tesA tesA 3321216 3321854 + putative acyl-CoA thioesterase gene gene3007 http://www.ncbi.nlm.nih.gov/gene/?term=YE3055 YE3056 YE3056 ybbO ybbO 3321900 3322676 + probable short-chain dehydrogenase gene gene3008 http://www.ncbi.nlm.nih.gov/gene/?term=YE3056 YE3057 YE3057 ybbN ybbN 3322748 3323617 + putative thioredoxin gene gene3009 http://www.ncbi.nlm.nih.gov/gene/?term=YE3057 YE3058 YE3058 YE3058 3323815 3324729 + conserved hypothetical protein gene gene3010 http://www.ncbi.nlm.nih.gov/gene/?term=YE3058 YE3059 YE3059 ybbJ ybbJ 3324732 3325181 + putative membrane protein gene gene3011 http://www.ncbi.nlm.nih.gov/gene/?term=YE3059 YE3060 YE3060 cueR cueR 3325227 3325646 - putative regulatory protein gene gene3012 http://www.ncbi.nlm.nih.gov/gene/?term=YE3060 YE3061 YE3061 ybaR ybaR 3325843 3328599 + putative cation-transporting ATPase gene gene3013 http://www.ncbi.nlm.nih.gov/gene/?term=YE3061 YE3062 YE3062 YE3062 3328681 3329490 + conserved hypothetical protein gene gene3014 http://www.ncbi.nlm.nih.gov/gene/?term=YE3062 YE3063 YE3063 YE3063 3329766 3330245 + conserved hypothetical protein gene gene3015 http://www.ncbi.nlm.nih.gov/gene/?term=YE3063 YE3064 YE3064 YE3064 3330944 3331963 + putative transposase for IS1667 Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 5.7e-56%2C 45.93 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1.3e-49%2C 42.16 38d in 332 aa gene gene3016 http://www.ncbi.nlm.nih.gov/gene/?term=YE3064 YE3066 YE3066 ushA ushA 3332365 3334017 - UDP-sugar hydrolase gene gene3017 http://www.ncbi.nlm.nih.gov/gene/?term=YE3066 YE3067 YE3067 rosA rosA 3334410 3335516 + putative membrane efflux protein gene gene3018 http://www.ncbi.nlm.nih.gov/gene/?term=YE3067 YE3068 YE3068 rosB rosB 3335753 3337444 + putative potassium antiporter gene gene3019 http://www.ncbi.nlm.nih.gov/gene/?term=YE3068 YE3069 YE3069 gsk gsk 3337519 3338823 - inosine-guanosine kinase gene gene3020 http://www.ncbi.nlm.nih.gov/gene/?term=YE3069 YE3070 YE3070 wzz wzz 3339012 3340103 - O-antigen chain length determinant gene gene3021 http://www.ncbi.nlm.nih.gov/gene/?term=YE3070 YE3071 YE3071 galE galE 3340149 3341159 - UDP-glucose 4-epimerase Previously sequenced as Yersinia enterocolitica UDP-glucose 4-epimerase GalE SWALL:GALE_YEREN (SWALL:Q57301) (336 aa) fasta scores: E(): 4.3e-132%2C 99.7 id in 336 aa. Similar to Edwardsiella ictaluri UDP-galactose 4-epimerase GalE SWALL:Q937X4 (EMBL:AY057452) (338 aa) fasta scores: E(): 6.6e-87%2C64.88 38d in 336 aa gene gene3022 http://www.ncbi.nlm.nih.gov/gene/?term=YE3071 YE3072 YE3072 manB manB 3341221 3342591 - phosphomannomutase gene gene3023 http://www.ncbi.nlm.nih.gov/gene/?term=YE3072 YE3073 YE3073 manC manC 3342603 3344000 - mannose-1-phosphate guanylyltransferase gene gene3024 http://www.ncbi.nlm.nih.gov/gene/?term=YE3073 YE3074 YE3074 wbcJ wbcJ 3344007 3344972 - GDP-fucose synthetase Similar to Escherichia coli GDP-fucose synthetase [includes: GDP-mannose-4-keto-6-d epimerase%3B GDP-4-keto-6-l-galactose reductase] Fcl or WcaG SWALL:FCL_ECOLI (SWALL:P32055) (321 aa) fasta scores: E(): 2.7e-96%2C 73.75 38d in 320 aa. Previously sequenced as Yersinia enterocolitica fucose synthetase WbcJ SWALL:Q56873 (EMBL:U46859) (321 aa) fasta scores: E(): 6.2e-127%2C 100 38d in 321 aa gene gene3025 http://www.ncbi.nlm.nih.gov/gene/?term=YE3074 YE3075 YE3075 gmd gmd 3344978 3346096 - GDP-mannose 4%2C6-dehydratase Similar to Escherichia coli GDP-mannose 4%2C6-dehydratase Gmd SWALL:GM4D_ECOLI (SWALL:P32054) (373 aa) fasta scores: E(): 2.8e-119%2C 78.7 38d in 371 aa. Previously sequenced as Yersinia enterocolitica probable GDP-mannose 4%2C6-dehydratase SWALL:GM4D_YEREN (SWALL:Q56872) (372 aa) fasta scores: E(): 3.1e-145%2C99.19 38d in 372 aa gene gene3026 http://www.ncbi.nlm.nih.gov/gene/?term=YE3075 YE3076 YE3076 wbcI wbcI 3346093 3347169 - putative galactosyltransferase Similar to Shigella dysenteriae galactosyltransferase RfpB SWALL:Q53452 (EMBL:S73325) (377 aa) fasta scores: E(): 2.7e-11%2C 27.13 38d in 387 aa. Previously sequenced as Yersinia enterocolitica RfbP protein WbcI or RfbP SWALL:Q56871 (EMBL:U46859) (358 aa) fasta scores: E(): 2e-145%2C 100 38d in 358 aa gene gene3027 http://www.ncbi.nlm.nih.gov/gene/?term=YE3076 YE3077 YE3077 wbcH wbcH 3347156 3348004 - putative glycosyl transferase Previously sequenced as Yersinia enterocolitica WbcF protein SWALL:Q56870 (EMBL:U46859) (283 aa) fasta scores: E(): 1.7e-115%2C 99.64 38d in 283 aa. Similar to Bacteroides fragilis putative fucosyl transferase WcfB SWALL:Q9XDK2 (EMBL:AF048749) (287 aa) fasta scores: E(): 3.9e-09%2C 30.62 38d in 271 aa gene gene3028 http://www.ncbi.nlm.nih.gov/gene/?term=YE3077 YE3078 YE3078 wbcG wbcG 3347994 3348860 - putative glycosyltransferase Previously sequenced as Yersinia enterocolitica putative WbcF glycosyltransferase WbcG SWALL:Q56869 (EMBL:U46859) (288 aa) fasta scores: E(): 1.5e-111%2C 99.65 id in 288 aa. N-terminus is similar to the N-terminal region of Vibrio cholerae sugar transferase SWALL:O34234 (EMBL:Y07786) (337 aa) fasta scores: E(): 1.1e-22%2C 40.19 id in 209 aa gene gene3029 http://www.ncbi.nlm.nih.gov/gene/?term=YE3078 YE3079 YE3079 wbcF wbcF 3348866 3349834 - hypothetical protein Poor database matches. Previously sequenced as Yersinia enterocolitica WbcF protein SWALL:Q56868 (EMBL:U46859) (322 aa) fasta scores: E(): 2.7e-122%2C 99.37 id in 322 aa gene gene3030 http://www.ncbi.nlm.nih.gov/gene/?term=YE3079 YE3080 YE3080 wbcE wbcE 3349831 3350850 - putative membrane protein Similar to Yersinia enterocolitica WbcE protein SWALL:Q56867 (EMBL:U46859) (331 aa) fasta scores: E(): 3.3e-116%2C 97.56 38d in 329 aa. Weakly similar to Lactobacillus delbrueckii EPS cluster protein EpsK SWALL:Q9F0B7 (EMBL:AF267127) (353 aa) fasta scores: E(): 0.002%2C 25 38d in 336 aa gene gene3031 http://www.ncbi.nlm.nih.gov/gene/?term=YE3080 YE3081 YE3081 wbcD wbcD 3351033 3352022 - putative 6-deoxy-D-Gul transferase Previously sequenced as Yersinia enterocolitica putative 6-deoxy-D-Gul transferase WbcD SWALL:Q56866 (EMBL:U46859) (336 aa) fasta scores: E(): 6.9e-127%2C 100 id in 317 aa. Similar to Salmonella typhimurium O antigen biosynthesis abequosyltransferase RfbV SWALL:RFBV_SALTY (SWALL:P26401) (333 aa) fasta scores: E(): 1.7e-07%2C 24.92 id in 337 aa. The N-terminus region of the CDS is extended in comparison to the previously sequenced Y. enterocolitica protein. Possible alternative translational start site. The C-terminus region of the CDS differs from the previously sequenced Y. enterocolitica protein gene gene3032 http://www.ncbi.nlm.nih.gov/gene/?term=YE3081 YE3082 YE3082 wzx wzx 3352027 3353316 - CAL13117.1 Previously sequenced as Yersinia enterocolitica putative O-unit flippase Wzx or RfbX SWALL:Q56865 (EMBL:U46859) (429 aa) fasta scores: E(): 7.1e-156%2C 98.6 id in 429 aa. Weakly similar to Staphylococcus aureus capsular polysaccharide biosynthesis protein CapF SWALL:CAPF_STAAU (SWALL:P39855) (396 aa) fasta scores: E(): 1.7e-08%2C 22.54 38d in 408 aa gene gene3033 http://www.ncbi.nlm.nih.gov/gene/?term=YE3082 YE3083 YE3083 wbcC wbcC 3353349 3354353 - putative glycosyltransferase Similar to Salmonella typhimurium O antigen biosynthesis abequosyltransferase RfbV SWALL:RFBV_SALTY (SWALL:P26401) (333 aa) fasta scores: E(): 2e-52%2C 44.34 id in 327 aa. C-terminal region is identical to the previously sequenced Yersinia enterocolitica putative glycosyltransferase WbcC SWALL:Q56864 (EMBL:U46859) (283 aa) fasta scores: E(): 6.4e-114%2C 100 38d in 283 aa gene gene3034 http://www.ncbi.nlm.nih.gov/gene/?term=YE3083 YE3084 YE3084 prt prt 3354419 3355297 - paratose synthase gene gene3035 http://www.ncbi.nlm.nih.gov/gene/?term=YE3084 YE3085 YE3085 wbcA wbcA 3355330 3355854 - putative epimerase Similar to Shigella flexneri dtdp-4-dehydrorhamnose 3%2C5-epimerase Rfbc or RmlC SWALL:RFBC_SHIFL (SWALL:P37780) (181 aa) fasta scores: E(): 4.6e-22%2C 36.78 38d in 174 aa. Previously sequenced as Yersinia enterocolitica putative 6-deoxy-Gul synthetase-1 WbcA SWALL:Q56862 (EMBL:U46859) (174 aa) fasta scores: E(): 6.6e-73%2C 99.42 38d in 174 aa gene gene3036 http://www.ncbi.nlm.nih.gov/gene/?term=YE3085 YE3086 YE3086 ddhB ddhB 3355978 3357051 - CDP-glucose 4%2C6-dehydratase Previously sequenced to Yersinia enterocolitica CDP-glucose 4%2C6-dehydratase DdhB or RfbG SWALL:Q56861 (EMBL:U46859) (358 aa) fasta scores: E(): 6.2e-151%2C 99.16 id in 358 aa. Similar to Salmonella typhimurium CDP-glucose 4%2C6-dehydratase RfbG SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 9.5e-109%2C69.66 38d in 356 aa. gene gene3037 http://www.ncbi.nlm.nih.gov/gene/?term=YE3086 YE3087 YE3087 ddhA ddhA 3357057 3357842 - glucose-1-phosphate cytidylyltransferase gene gene3038 http://www.ncbi.nlm.nih.gov/gene/?term=YE3087 YE3088 YE3088 hemH hemH 3358610 3359578 - ferrochelatase gene gene3039 http://www.ncbi.nlm.nih.gov/gene/?term=YE3088 YE3089 YE3089 adk adk 3359696 3360340 - adenylate kinase gene gene3040 http://www.ncbi.nlm.nih.gov/gene/?term=YE3089 YE3090 YE3090 htpG htpG 3360566 3362440 - heat shock protein HtpG gene gene3041 http://www.ncbi.nlm.nih.gov/gene/?term=YE3090 YE3091 YE3091 recR recR 3362773 3363378 - recombination protein RecR gene gene3042 http://www.ncbi.nlm.nih.gov/gene/?term=YE3091 YE3092 YE3092 YE3092 3363378 3363710 - conserved hypothetical protein gene gene3043 http://www.ncbi.nlm.nih.gov/gene/?term=YE3092 YE3093 YE3093 dnaX dnaX 3363766 3365736 - DNA polymerase III subunit Tau (contains DNA polymerase III subunit Gamma) gene gene3044 http://www.ncbi.nlm.nih.gov/gene/?term=YE3093 YE3094 YE3094 apt apt 3365820 3366383 - adenine phosphoribosyltransferase gene gene3045 http://www.ncbi.nlm.nih.gov/gene/?term=YE3094 YE3094A YE3094A YE3094A 3366599 3366979 - putative membrane protein Similar to Yersinia pestis putative membrane protein y1058 SWALL:Q8D149 (EMBL:AE013709) (126 aa) fasta scores: E(): 4.2e-46%2C 89.6 38d in 125 aa%2C Salmonella enterica subsp. enterica serovar Typhi Ty2 putative membrane protein YbaN SWALL:AAO69969 (EMBL:AE016842) (125 aa) fasta scores: E(): 4.9e-35%2C 73.59 38d in 125 aa and to Escherichia coli%2C Escherichia coli O157:H7%2C and Shigella flexneri hypothetical protein yban yban or b0468 or z0585 or ecs0521 or sf0413 SWALL:YBAN_ECOLI (SWALL:P45808) (125 aa) fasta scores: E(): 2.2e-33%2C 70.96 38d in 124 aa gene gene3046 http://www.ncbi.nlm.nih.gov/gene/?term=YE3094A YE3095 YE3095 priC priC 3367153 3367689 + primosomal replication protein n'' gene gene3047 http://www.ncbi.nlm.nih.gov/gene/?term=YE3095 YE3096 YE3096 YE3096 3367962 3368117 + conserved hypothetical protein gene gene3048 http://www.ncbi.nlm.nih.gov/gene/?term=YE3096 YE3097 YE3097 kefA kefA 3368224 3371571 - putative potassium efflux system gene gene3049 http://www.ncbi.nlm.nih.gov/gene/?term=YE3097 YE3098 YE3098 YE3098 3371864 3372154 - conserved hypothetical protein gene gene3050 http://www.ncbi.nlm.nih.gov/gene/?term=YE3098 YE3099 YE3099 acrR acrR 3372244 3372900 - putative tetR-family transcriptional regulatory protein gene gene3051 http://www.ncbi.nlm.nih.gov/gene/?term=YE3099 YE3100 YE3100 acrA acrA 3373045 3374232 + multidrug efflux protein gene gene3052 http://www.ncbi.nlm.nih.gov/gene/?term=YE3100 YE3101 YE3101 acrB acrB 3374249 3377401 + multidrug efflux protein gene gene3053 http://www.ncbi.nlm.nih.gov/gene/?term=YE3101 YE3102 YE3102 YE3102 3377642 3378004 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhfY SWALL:YHFY_ECOLI (SWALL:P45551) (120 aa) fasta scores: E(): 1e-12%2C 43.47 38d in 115 aa%2C and to Pasteurella multocida hypothetical protein PM1058 SWALL:Q9CLZ1 (EMBL:AE006147) (126 aa) fasta scores: E(): 4.9e-08%2C 29.91 38d in 117 aa gene gene3054 http://www.ncbi.nlm.nih.gov/gene/?term=YE3102 YE3103 YE3103 YE3103 3378070 3379245 + conserved hypothetical protein Similar to Escherichia coli hypothetical protein YhfX SWALL:YHFX_ECOLI (SWALL:P45550) (387 aa) fasta scores: E(): 1.5e-86%2C 57.4 38d in 385 aa%2C and to Bacillus halodurans hypothetical protein BH0591 SWALL:Q9KF94 (EMBL:AP001509) (386 aa) fasta scores: E(): 5.8e-46%2C 36.5 id in 389 aa gene gene3055 http://www.ncbi.nlm.nih.gov/gene/?term=YE3103 YE3104 YE3104 YE3104 3379242 3380507 + metalloenzyme superfamily protein Similar to Escherichia coli hypothetical protein YhfW SWALL:YHFW_ECOLI (SWALL:P45549) (408 aa) fasta scores: E(): 2e-81%2C 63.96 38d in 419 aa. Weakly similar to Bacillus subtilis phosphopentomutase Drm SWALL:DEOB_BACSU (SWALL:P46353) (394 aa) fasta scores: E(): 1.7e-09%2C 25.66 id in 413 aa gene gene3056 http://www.ncbi.nlm.nih.gov/gene/?term=YE3104 YE3105 YE3105 YE3105 3380563 3380928 + conserved hypothetical protein Similar to Bacillus halodurans hypothetical protein BH0588 SWALL:Q9KF97 (EMBL:AP001509) (119 aa) fasta scores: E(): 7.3e-16%2C 46.15 38d in 117 aa%2C and to Escherichia coli hypothetical protein YhfU SWALL:YHFU_ECOLI (SWALL:P45547) (130 aa) fasta scores: E(): 7.3e-12%2C 40.7 38d in 113 aa gene gene3057 http://www.ncbi.nlm.nih.gov/gene/?term=YE3105 YE3106 YE3106 YE3106 3381038 3382321 + putative membrane protein Similar to Bacillus halodurans hypothetical protein BH0589 SWALL:Q9KF96 (EMBL:AP001509) (429 aa) fasta scores: E(): 1.1e-64%2C 42.29 38d in 428 aa%2C and to Escherichia coli hypothetical protein YhfT SWALL:YHFT_ECOLI (SWALL:P45546) (434 aa) fasta scores: E(): 1.1e-25%2C 37.13 38d in 439 aa gene gene3058 http://www.ncbi.nlm.nih.gov/gene/?term=YE3106 YE3107 YE3107 ykgM ykgM 3382624 3382884 + putative ribosomal protein gene gene3059 http://www.ncbi.nlm.nih.gov/gene/?term=YE3107 YE3108 YE3108 YE3108 3382900 3383043 + putative ribosomal protein L36 gene gene3060 http://www.ncbi.nlm.nih.gov/gene/?term=YE3108 YE3109 YE3109 YE3109 3383171 3384049 - periplasmic solute binding protein Similar to Bacillus subtilis manganese-binding lipoprotein precursor MntA SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 2.2e-26%2C 31.76 38d in 277 aa%2Cand to Listeria monocytogenes manganese-binding lipoprotein precursor LMO1847 SWALL:MNTA_LISMO (SWALL:Q8Y653) (310 aa) fasta scores: E(): 1.8e-30%2C 35.44 id in 268 aa gene gene3061 http://www.ncbi.nlm.nih.gov/gene/?term=YE3109 YE3110 YE3110 YE3110 3384095 3384952 - putative ABC-transporter membrane protein Similar to Neisseria meningitidis putative ABC-transporter membrane protein NMA0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.5e-53%2C56.07 38d in 280 aa%2C and to Rhizobium loti ABC transporter%2C permease protein MLL8314 SWALL:Q983I6 (EMBL:AP003013) (291 aa) fasta scores: E(): 3.7e-53%2C58.18 38d in 275 aa gene gene3062 http://www.ncbi.nlm.nih.gov/gene/?term=YE3110 YE3111 YE3111 YE3111 3384949 3385677 - ABC transport system ATP-binding protein Similar to Bacillus subtilis manganese transport system ATP-binding protein MntB SWALL:MNTB_BACSU (SWALL:O34338) (250 aa) fasta scores: E(): 2.6e-18%2C 34.04 id in 235 aa%2C and to Rhizobium loti ABC transporter%2CATP-binding protein MLL8315 SWALL:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 5.9e-29%2C 44.9 38d in 216 aa gene gene3063 http://www.ncbi.nlm.nih.gov/gene/?term=YE3111 YE3113 YE3113 YE3113 3386447 3386800 + conserved hypothetical protein gene gene3064 http://www.ncbi.nlm.nih.gov/gene/?term=YE3113 YE3114 YE3114 YE3114 3386958 3387326 + conserved hypothetical protein gene gene3065 http://www.ncbi.nlm.nih.gov/gene/?term=YE3114 YE3115 YE3115 ymoA ymoA 3387372 3387575 + modulating protein YmoA (histone-like protein) gene gene3066 http://www.ncbi.nlm.nih.gov/gene/?term=YE3115 YE3116 YE3116 YE3116 3388337 3388726 + putative 6-O-methylguanine DNA methyltransferase family protein Similar to the C-terminal region Yersinia pestis putative 6-O-methylguanine DNA methyltransferase family protein YPO3139 SWALL:Q8ZC83 (EMBL:AJ414155) (181 aa) fasta scores: E(): 7.9e-33%2C 68.65 38d in 134 aa. C-terminus is similar to the C-terminal region of Escherichia coli hypothetical protein YbaZ SWALL:YBAZ_ECOLI (SWALL:P75707) (129 aa) fasta scores: E(): 4.6e-28%2C 73.26 38d in 101 aa gene gene3068 http://www.ncbi.nlm.nih.gov/gene/?term=YE3116 YE3117 YE3117 ybaY ybaY 3388778 3389308 - putative lipoprotein gene gene3069 http://www.ncbi.nlm.nih.gov/gene/?term=YE3117 YE3118 YE3118 tesB tesB 3389566 3390429 + acyl-CoA thioesterase II gene gene3070 http://www.ncbi.nlm.nih.gov/gene/?term=YE3118 YE3119 YE3119 amtB amtB 3390729 3392024 - probable ammonium transporter gene gene3071 http://www.ncbi.nlm.nih.gov/gene/?term=YE3119 YE3120 YE3120 glnK glnK 3392058 3392396 - nitrogen regulatory protein P-II gene gene3072 http://www.ncbi.nlm.nih.gov/gene/?term=YE3120 YE3121 YE3121 mdlB mdlB 3392827 3394605 - probable ATP transporter (ATP-binding protein) gene gene3073 http://www.ncbi.nlm.nih.gov/gene/?term=YE3121 YE3122 YE3122 mdlA mdlA 3394598 3396364 - probable ABC transporter (ATP-binding protein) gene gene3074 http://www.ncbi.nlm.nih.gov/gene/?term=YE3122 YE3123 YE3123 YE3123 3396639 3397100 - probable AsnC-family regulatory protein gene gene3075 http://www.ncbi.nlm.nih.gov/gene/?term=YE3123 YE3124 YE3124 YE3124 3397227 3398267 + putative Pyridoxal-phosphate dependent protein gene gene3076 http://www.ncbi.nlm.nih.gov/gene/?term=YE3124 YE3125 YE3125 YE3125 3398394 3399215 - putative haloacid dehalogenase-like hydrolase gene gene3077 http://www.ncbi.nlm.nih.gov/gene/?term=YE3125 YE3126 YE3126 YE3126 3399319 3401022 + conserved hypothetical protein gene gene3078 http://www.ncbi.nlm.nih.gov/gene/?term=YE3126 YE3127 YE3127 YE3127 3401136 3401834 + conserved hypothetical protein gene gene3079 http://www.ncbi.nlm.nih.gov/gene/?term=YE3127 YE3128 YE3128 YE3128 3401921 3402328 - conserved hypothetical protein gene gene3080 http://www.ncbi.nlm.nih.gov/gene/?term=YE3128 YE3129 YE3129 YE3129 3402575 3402997 - putative exported protein gene gene3081 http://www.ncbi.nlm.nih.gov/gene/?term=YE3129 YE3130 YE3130 ppiD ppiD 3403136 3405022 - peptidyl-prolyl cis-trans isomerase D gene gene3082 http://www.ncbi.nlm.nih.gov/gene/?term=YE3130 YE3131 YE3131 hupB hupB 3405222 3405494 - DNA-binding protein HU-beta gene gene3083 http://www.ncbi.nlm.nih.gov/gene/?term=YE3131 YE3132 YE3132 lon lon 3405712 3408066 - ATP-dependent protease La gene gene3084 http://www.ncbi.nlm.nih.gov/gene/?term=YE3132 YE3133 YE3133 clpX clpX 3408261 3409532 - ATP-dependent Clp protease ATP-binding subunit ClpX gene gene3085 http://www.ncbi.nlm.nih.gov/gene/?term=YE3133 YE3134 YE3134 clpP clpP 3409738 3410361 - ATP-dependent Clp protease proteolytic subunit ClpP gene gene3086 http://www.ncbi.nlm.nih.gov/gene/?term=YE3134 YE3135 YE3135 tig tig 3410818 3412122 - Trigger factor gene gene3087 http://www.ncbi.nlm.nih.gov/gene/?term=YE3135 YE3136 YE3136 YE3136 3412077 3412352 - hypothetical protein Poor database matches. N-terminus is similar to an internal region of Yersinia pestis hypothetical protein YPO3159 SWALL:Q8ZC63 (EMBL:AJ414155) (67 aa) fasta scores: E(): 4e-11%2C 94.11 38d in 34 aa. Doubtful CDS gene gene3088 http://www.ncbi.nlm.nih.gov/gene/?term=YE3136 YE3137 YE3137 bolA bolA 3412538 3412870 - BolA protein gene gene3089 http://www.ncbi.nlm.nih.gov/gene/?term=YE3137 YE3138 YE3138 yajG yajG 3413221 3413799 + putative lipoprotein gene gene3090 http://www.ncbi.nlm.nih.gov/gene/?term=YE3138 YE3139 YE3139 ampG ampG 3413877 3415355 + Beta-lactamase induction signal transducer AmpG gene gene3091 http://www.ncbi.nlm.nih.gov/gene/?term=YE3139 YE3140 YE3140 yfeN yfeN 3415620 3416399 + putative exported protein gene gene3092 http://www.ncbi.nlm.nih.gov/gene/?term=YE3140 YE3141 YE3141 cyoA cyoA 3416762 3417718 + cytochrome O ubiquinol oxidase subunit II gene gene3093 http://www.ncbi.nlm.nih.gov/gene/?term=YE3141 YE3142 YE3142 cyoB cyoB 3417723 3419714 + cytochrome O ubiquinol oxidase subunit I gene gene3094 http://www.ncbi.nlm.nih.gov/gene/?term=YE3142 YE3143 YE3143 cyoC cyoC 3419704 3420318 + cytochrome O ubiquinol oxidase subunit III gene gene3095 http://www.ncbi.nlm.nih.gov/gene/?term=YE3143 YE3144 YE3144 cyoD cyoD 3420378 3420665 + cytochrome O ubiquinol oxidase subunit CyoD gene gene3096 http://www.ncbi.nlm.nih.gov/gene/?term=YE3144 YE3145 YE3145 cyoE cyoE 3420676 3421566 + protoheme IX farnesyltransferase gene gene3097 http://www.ncbi.nlm.nih.gov/gene/?term=YE3145 YE3146 YE3146 yajR yajR 3421737 3423107 + putative transporter gene gene3098 http://www.ncbi.nlm.nih.gov/gene/?term=YE3146 YE3147 YE3147 YE3147 3423161 3423652 - conserved hypothetical protein gene gene3099 http://www.ncbi.nlm.nih.gov/gene/?term=YE3147 YE3148 YE3148 YE3148 3423827 3424108 + hypothetical protein Doubtful CDS. N-terminus is similar to the C-terminal region of Escherichia coli hypothetical protein SWALL:P71284 (EMBL:U70214) (103 aa) fasta scores: E(): 0.0002%2C 62.79 38d in 43 aa. Possible gene remnant gene gene3100 http://www.ncbi.nlm.nih.gov/gene/?term=YE3148 YE3149 YE3149 apbA apbA 3423990 3424901 + 2-dehydropantoate 2-reductase gene gene3101 http://www.ncbi.nlm.nih.gov/gene/?term=YE3149 YE3150 YE3150 thiJ thiJ 3424864 3425460 + 4-methyl-5(B-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme gene gene3102 http://www.ncbi.nlm.nih.gov/gene/?term=YE3150 YE3151 YE3151 thiI thiI 3425622 3427073 - thiamine biosynthesis protein gene gene3103 http://www.ncbi.nlm.nih.gov/gene/?term=YE3151 YE3153 YE3153 xseB xseB 3427349 3427603 + exodeoxyribonuclease VII small subunit gene gene3104 http://www.ncbi.nlm.nih.gov/gene/?term=YE3153 YE3154 YE3154 ispA ispA 3427608 3428528 + geranyltranstransferase gene gene3105 http://www.ncbi.nlm.nih.gov/gene/?term=YE3154 YE3155 YE3155 dxs dxs 3428582 3430441 + 1-deoxy-D-xylulose 5-phosphate synthase gene gene3106 http://www.ncbi.nlm.nih.gov/gene/?term=YE3155 YE3156 YE3156 YE3156 3430443 3430931 - hypothetical protein Doubtful CDS. N-terminus is similar to the C-terminal region of Yersinia pestis hypothetical protein YPO0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.0092%2C 63.63 38d in 33 aa gene gene3107 http://www.ncbi.nlm.nih.gov/gene/?term=YE3156 YE3157 YE3157 pgpA pgpA 3430950 3431447 - phosphatidylglycerophosphatase A gene gene3108 http://www.ncbi.nlm.nih.gov/gene/?term=YE3157 YE3158 YE3158 thiL thiL 3431440 3432429 - thiamine-monophosphate kinase gene gene3109 http://www.ncbi.nlm.nih.gov/gene/?term=YE3158 YE3159 YE3159 nusB nusB 3432509 3432925 - N utilization substance protein B gene gene3110 http://www.ncbi.nlm.nih.gov/gene/?term=YE3159 YE3160 YE3160 ribH ribH 3432951 3433421 - 6%2C7-dimethyl-8-ribityllumazine synthase gene gene3111 http://www.ncbi.nlm.nih.gov/gene/?term=YE3160 YE3161 YE3161 ribD ribD 3433556 3434665 - riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase%3B 5-amino-6-(5-phosphoribosylamino)uracil reductase gene gene3112 http://www.ncbi.nlm.nih.gov/gene/?term=YE3161 YE3162 YE3162 YE3162 3434730 3435179 - conserved hypothetical protein gene gene3113 http://www.ncbi.nlm.nih.gov/gene/?term=YE3162 YE3163 YE3163 secF secF 3435444 3436412 - protein-export membrane protein SecF gene gene3114 http://www.ncbi.nlm.nih.gov/gene/?term=YE3163 YE3164 YE3164 secD secD 3436423 3438270 - protein-export membrane protein SecD gene gene3115 http://www.ncbi.nlm.nih.gov/gene/?term=YE3164 YE3165 YE3165 YE3165 3438298 3438630 - putative membrane protein Similar to Escherichia coli and Shigella flexneri hypothetical protein YajC SWALL:YAJC_ECOLI (SWALL:P19677) (110 aa) fasta scores: E(): 1.9e-34%2C 87.27 38d in 110 aa%2Cand to Yersinia pestis putative membrane protein YPO3190 SWALL:Q8ZC34 (EMBL:AJ414155) (111 aa) fasta scores: E(): 5.5e-35%2C 90.09 38d in 111 aa gene gene3116 http://www.ncbi.nlm.nih.gov/gene/?term=YE3165 YE3166 YE3166 tgt tgt 3438743 3439879 - queuine tRNA-ribosyltransferase gene gene3117 http://www.ncbi.nlm.nih.gov/gene/?term=YE3166 YE3168 YE3168 YE3168 3441780 3442187 + conserved hypothetical protein (pseudogene) Similar to Pseudomonas aeruginosa hypothetical protein Pa2764 SWALL:Q9I079 (EMBL:AE004704) (231 aa) fasta scores: E(): 1.6e-45%2C 53.68 38d in 231 aa and to Ralstonia solanacearum probable signal peptide protein rsc2328 or rs01220 SWALL:Q8XWZ0 (EMBL:AL646069) (259 aa) fasta scores: E(): 5.8e-33%2C 41.73 38d in 230 aa. This CDS has been disrupted by the insertion of an IS1669 element pseudogene gene3118 http://www.ncbi.nlm.nih.gov/gene/?term=YE3168 YE3169 YE3169 YE3169 3440614 3440928 + IS1669 hypothetical protein Similar to Salmonella typhimurium putative cytoplasmic protein STM0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 6.6e-25%2C 59.37 38d in 128 aa. Also similar to Yersinia pestis hypothetical protein YPO2009a SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 3.1e-30%2C 87.5 38d in 104 aa gene gene3119 http://www.ncbi.nlm.nih.gov/gene/?term=YE3169 YE3170 YE3170 YE3170 3440946 3441743 + putative transposase for insertion element IS1669 Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa gene gene3120 http://www.ncbi.nlm.nih.gov/gene/?term=YE3170 YE3172 YE3172 queA queA 3442296 3443384 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase gene gene3121 http://www.ncbi.nlm.nih.gov/gene/?term=YE3172 YE3173 YE3173 YE3173 3443527 3444108 + conserved hypothetical protein gene gene3122 http://www.ncbi.nlm.nih.gov/gene/?term=YE3173 YE3174 YE3174 ahpC ahpC 3444333 3444935 + putative alkyl hydroperoxide reductase subunit c gene gene3123 http://www.ncbi.nlm.nih.gov/gene/?term=YE3174 YE3175 YE3175 ggt ggt 3445681 3447444 + gamma-glutamyltranspeptidase precursor Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 9.7e-97%2C 50.09 id in 533 aa%2C and to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_PSESP (SWALL:P36267) (575 aa) fasta scores: E(): 2.5e-118%2C58.03 38d in 591 aa gene gene3124 http://www.ncbi.nlm.nih.gov/gene/?term=YE3175 YE3176 YE3176 YE3176 3447512 3448192 - probable short-chain dehydrogenase gene gene3125 http://www.ncbi.nlm.nih.gov/gene/?term=YE3176 YE3177 YE3177 malZ malZ 3448526 3450364 - putative maltodextrin glucosidase gene gene3126 http://www.ncbi.nlm.nih.gov/gene/?term=YE3177 YE3178 YE3178 proY proY 3450729 3452120 - probable proline-specific permease gene gene3127 http://www.ncbi.nlm.nih.gov/gene/?term=YE3178 YE3179 YE3179 brnQ brnQ 3452196 3453515 - branched-chain amino acid transport system II carrier protein gene gene3128 http://www.ncbi.nlm.nih.gov/gene/?term=YE3179 YE3180 YE3180 pstS pstS 3453883 3454113 - phosphate binding protein (pseudogene) This CDS appears to have suffered a deletion event and carries a premature stop codon pseudogene gene3129 http://www.ncbi.nlm.nih.gov/gene/?term=YE3180 YE3181 YE3181 phoR phoR 3454879 3456195 - phosphate regulon sensor protein PhoR gene gene3130 http://www.ncbi.nlm.nih.gov/gene/?term=YE3181 YE3182 YE3182 phoB phoB 3456220 3456909 - phosphate regulon transcriptional regulatory protein gene gene3131 http://www.ncbi.nlm.nih.gov/gene/?term=YE3182 YE3183 YE3183 sbcD sbcD 3457179 3458417 + exonuclease SbcD gene gene3132 http://www.ncbi.nlm.nih.gov/gene/?term=YE3183 YE3184 YE3184 sbcC sbcC 3458414 3462103 + exonuclease gene gene3133 http://www.ncbi.nlm.nih.gov/gene/?term=YE3184 YE3185 YE3185 YE3185 3462393 3463307 - conserved hypothetical protein gene gene3134 http://www.ncbi.nlm.nih.gov/gene/?term=YE3185 YE3186 YE3186 rdgC rdgC 3463646 3464557 + recombination associated protein RdgC gene gene3135 http://www.ncbi.nlm.nih.gov/gene/?term=YE3186 YE3187 YE3187 YE3187 3464629 3464916 - conserved hypothetical protein gene gene3136 http://www.ncbi.nlm.nih.gov/gene/?term=YE3187 YE3188 YE3188 aroL aroL 3465400 3465924 - shikimate kinase II gene gene3137 http://www.ncbi.nlm.nih.gov/gene/?term=YE3188 YE3189 YE3189 YE3189 3466167 3468308 - putative hydroxamate-type ferrisiderophore receptor gene gene3138 http://www.ncbi.nlm.nih.gov/gene/?term=YE3189 YE3190 YE3190 YE3190 3468295 3469413 - conserved hypothetical protein gene gene3139 http://www.ncbi.nlm.nih.gov/gene/?term=YE3190 YE3191 YE3191 YE3191 3469636 3470193 - putative methyltransferase gene gene3140 http://www.ncbi.nlm.nih.gov/gene/?term=YE3191 YE3192 YE3192 YE3192 3470438 3470707 - putative exported protein Similar to Yersinia pestis putative exported protein YPO3518 SWALL:Q8ZBA1 (EMBL:AJ414157) (87 aa) fasta scores: E(): 3.3e-06%2C 35.55 38d in 90 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative periplasmic protein STM3362 or STY3543 SWALL:Q8XEN2 (EMBL:AE008855) (88 aa) fasta scores: E(): 5.3e-06%2C 41.75 id in 91 aa gene gene3141 http://www.ncbi.nlm.nih.gov/gene/?term=YE3192 YE3193 YE3193 YE3193 3470920 3471690 - conserved hypothetical protein Similar to Salmonella typhi putative methyltransferase STY0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 5.8e-60%2C 63.92 38d in 255 aa%2Cand to Salmonella typhimurium putative methyltransferase in menaquinone/biotin biosynthesis STM0259 SWALL:Q8ZRM3 (EMBL:AE008706) (256 aa) fasta scores: E(): 8.9e-60%2C63.52 38d in 255 aa gene gene3142 http://www.ncbi.nlm.nih.gov/gene/?term=YE3193 YE3194 YE3194 YE3194 3471834 3472328 + acetyltransferase (GNAT) family protein Similar to Listeria monocytogenes hypothetical protein LMO0624 SWALL:Q8Y9A8 (EMBL:AL591976) (147 aa) fasta scores: E(): 6.9e-10%2C 32.46 38d in 154 aa%2C and to Bacillus subtilis YycN protein SWALL:O32293 (EMBL:Z99124) (156 aa) fasta scores: E(): 1.1e-07%2C 31.44 38d in 159 aa gene gene3143 http://www.ncbi.nlm.nih.gov/gene/?term=YE3194 YE3195 YE3195 YE3195 3472473 3472727 - putative membrane protein gene gene3144 http://www.ncbi.nlm.nih.gov/gene/?term=YE3195 YE3196 YE3196 YE3196 3472856 3481480 - putative cyclic beta 1-2 glucan synthetase Similar to Brucella abortus cyclic beta 1-2 glucan synthetase Cgs SWALL:O85166 (EMBL:AF047823) (2831 aa) fasta scores: E(): 0%2C 43.84 38d in 2851 aa%2C and to Brucella melitensis cellobiose-phosphorylase BMEI1837 SWALL:Q8YEP1 (EMBL:AE009617) (2867 aa) fasta scores: E(): 0%2C 44.71 38d in 2905 aa gene gene3145 http://www.ncbi.nlm.nih.gov/gene/?term=YE3196 YE3197 YE3197 YE3197 3481855 3482604 - conserved hypothetical protein gene gene3146 http://www.ncbi.nlm.nih.gov/gene/?term=YE3197 YE3198 YE3198 aglB aglB 3482808 3484130 - 6-phospho-alpha-glucosidase Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase aglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.6e-121%2C67.73 38d in 437 aa%2C and to Clostridium perfringens maltose-6'-phosphate glucosidase malh or cpe0199 SWALL:Q8XNY3 (EMBL:AP003185) (441 aa) fasta scores: E(): 2.5e-122%2C 68.03 38d in 438 aa gene gene3147 http://www.ncbi.nlm.nih.gov/gene/?term=YE3198 YE3199 YE3199 aglA aglA 3484142 3485686 - PTS system%2C alpha-glucoside-specific IIBC component Similar to Klebsiella pneumoniae PTS system%2Calpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 1.4e-114%2C 55.72 38d in 524 aa%2C and to Fusobacterium mortiferum PTS system%2C alpha-glucoside-specific IIBC component MalB SWALL:PTAB_FUSMR (SWALL:O06900) (526 aa) fasta scores: E(): 5.2e-109%2C 51.52 38d in 524 aa gene gene3148 http://www.ncbi.nlm.nih.gov/gene/?term=YE3199 YE3200 YE3200 YE3200 3485925 3486635 + GntR family transcription regulatory protein Similar to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 7.7e-23%2C 32.62 38d in 236 aa%2C and to Escherichia coli hypothetical transcriptional regulator YidP SWALL:YIDP_ECOLI (SWALL:P31453) (238 aa) fasta scores: E(): 9.8e-30%2C 37.02 38d in 235 aa gene gene3149 http://www.ncbi.nlm.nih.gov/gene/?term=YE3200 YE3201 YE3201 proA proA 3486704 3487963 - gamma-glutamyl phosphate reductase gene gene3150 http://www.ncbi.nlm.nih.gov/gene/?term=YE3201 YE3202 YE3202 proB proB 3487973 3489076 - glutamate 5-kinase gene gene3151 http://www.ncbi.nlm.nih.gov/gene/?term=YE3202 YE3203 YE3203 crl crl 3489232 3489633 - curlin genes regulatory protein gene gene3152 http://www.ncbi.nlm.nih.gov/gene/?term=YE3203 YE3204 YE3204 YE3204 3489693 3490940 - conserved hypothetical protein gene gene3153 http://www.ncbi.nlm.nih.gov/gene/?term=YE3204 YE3205 YE3205 gpt gpt 3491191 3491649 - xanthine-guanine phosphoribosyltransferase gene gene3154 http://www.ncbi.nlm.nih.gov/gene/?term=YE3205 YE3206 YE3206 pepD pepD 3491957 3493417 + aminoacyl-histidine dipeptidase gene gene3155 http://www.ncbi.nlm.nih.gov/gene/?term=YE3206 YE3207 YE3207 dinP dinP 3493491 3494549 - DNA-damage-inducible protein P gene gene3156 http://www.ncbi.nlm.nih.gov/gene/?term=YE3207 YE3208 YE3208 YE3208 3494652 3495044 - conserved hypothetical protein Similar to Ralstonia solanacearum hypothetical protein Rsp1515 or Rs04792 SWALL:Q8XPX1 (EMBL:AL646085) (130 aa) fasta scores: E(): 1.7e-22%2C 48.81 38d in 127 aa and to Fusobacterium nucleatum translation initiation inhibitor Fn1973 SWALL:Q8RHN7 (EMBL:AE010499) (128 aa) fasta scores: E(): 2.4e-10%2C 34.64 38d in 127 aa gene gene3157 http://www.ncbi.nlm.nih.gov/gene/?term=YE3208 YE3209 YE3209 YE3209 3495044 3496012 - hydroxy amino acid dehydratase Similar to Prokaryotic and Eukaryotic hydroxy amino acid deaminases including: Escherichia coli%2C and Escherichia coli O157:H7 threonine dehydratase catabolic TdcB or b3117 or z4469 or ecs3997 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 4.3e-41%2C 39.62 id in 323 aa%2C Ralstonia solanacearum probable amino-acid dehydratase protein Rsp1516 or Rs04793 SWALL:Q8XPX0 (EMBL:AL646085) (323 aa) fasta scores: E(): 7.1e-85%2C70.21 38d in 319 aa and to Mus musculus serine racemase SrR SWALL:SRR_MOUSE (SWALL:Q9QZX7) (339 aa) fasta scores: E(): 1.5e-39%2C 39.56 38d in 321 aa gene gene3158 http://www.ncbi.nlm.nih.gov/gene/?term=YE3209 YE3210 YE3210 YE3210 3496015 3496647 - conserved hypothetical protein Similar to Ralstonia solanacearum hypothetical protein Rsp1517 or Rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 2.1e-47%2C 66.5 38d in 209 aa and to Streptomyces coelicolor hypothetical protein Sco0822 or Scf43a.12C SWALL:Q9XAA3 (EMBL:AL096837) (226 aa) fasta scores: E(): 8.4e-13%2C 28.43 38d in 204 aa gene gene3159 http://www.ncbi.nlm.nih.gov/gene/?term=YE3210 YE3211 YE3211 ddlA ddlA 3496761 3497861 - D-alanine--D-alanine ligase A Similar to Escherichia coli%2C and Escherichia coli O157:H7 D-alanine--D-alanine ligase A DdlA or b0381 or z0477 or ecs0431 SWALL:DDLA_ECOLI (SWALL:P23844) (364 aa) fasta scores: E(): 3.2e-101%2C 69.78 38d in 364 aa and to Salmonella typhimurium%2C and Salmonella typhi D-alanine--D-alanine ligase A DdlA or stm0380 or sty0412 SWALL:DDLA_SALTY (SWALL:P15051) (363 aa) fasta scores: E(): 6.6e-101%2C 69.14 38d in 363 aa gene gene3160 http://www.ncbi.nlm.nih.gov/gene/?term=YE3211 YE3212 YE3212 YE3212 3498434 3499222 + putative exported protein gene gene3161 http://www.ncbi.nlm.nih.gov/gene/?term=YE3212 YE3213 YE3213 YE3213 3499362 3499589 - putative exported protein gene gene3162 http://www.ncbi.nlm.nih.gov/gene/?term=YE3213 YE3214 YE3214 apbE apbE 3499602 3500624 - thiamine biosynthesis lipoprotein gene gene3163 http://www.ncbi.nlm.nih.gov/gene/?term=YE3214 YE3215 YE3215 nqrF nqrF 3500664 3501887 - NADH-uniquinone oxidoreductase subunit F gene gene3164 http://www.ncbi.nlm.nih.gov/gene/?term=YE3215 YE3216 YE3216 nqrE nqrE 3501903 3502499 - Na+-translocating NADH-quinone reductase subunit E gene gene3165 http://www.ncbi.nlm.nih.gov/gene/?term=YE3216 YE3217 YE3217 nqrD nqrD 3502506 3503135 - Na+-translocating NADH-quinone reductase subunit D gene gene3166 http://www.ncbi.nlm.nih.gov/gene/?term=YE3217 YE3218 YE3218 nqrC nqrC 3503128 3503928 - Na+-translocating NADH-quinone reductase subunit C gene gene3167 http://www.ncbi.nlm.nih.gov/gene/?term=YE3218 YE3219 YE3219 nqrB nqrB 3503918 3505159 - NADH-ubiquinone oxidoreductase subunit B gene gene3168 http://www.ncbi.nlm.nih.gov/gene/?term=YE3219 YE3220 YE3220 nqrA nqrA 3505163 3506506 - NADH-ubiquinone oxidoreductase subunit A gene gene3169 http://www.ncbi.nlm.nih.gov/gene/?term=YE3220 YE3221 YE3221 yafK yafK 3506998 3507747 + putative exported protein gene gene3170 http://www.ncbi.nlm.nih.gov/gene/?term=YE3221 YE3222 YE3222 YE3222 3507721 3508485 - conserved hypothetical protein gene gene3171 http://www.ncbi.nlm.nih.gov/gene/?term=YE3222 YE3223 YE3223 lpcA lpcA 3508587 3509168 - phosphoheptose isomerase gene gene3172 http://www.ncbi.nlm.nih.gov/gene/?term=YE3223 YE3224 YE3224 yafH yafH 3509424 3511871 + probable acyl-CoA dehydrogenase gene gene3173 http://www.ncbi.nlm.nih.gov/gene/?term=YE3224 YE3225 YE3225 rcsC rcsC 3512249 3514108 - putative accessory processing protein gene gene3174 http://www.ncbi.nlm.nih.gov/gene/?term=YE3225 YE3226 YE3226 rcsA rcsA 3514175 3520372 - putative adhesin gene gene3175 http://www.ncbi.nlm.nih.gov/gene/?term=YE3226 YE3227 YE3227 rcsB rcsB 3520413 3522206 - putative surface-exposed protein gene gene3176 http://www.ncbi.nlm.nih.gov/gene/?term=YE3227 YE3228 YE3228 mtrK mtrK 3522963 3524162 - probable 5-methylthioribose kinase Similar to many proteins involved in the methionine salvage pathway: Klebsiella pneumoniae 5-methylthioribose kinase MtrK SWALL:Q9F0P1 (EMBL:AF212863) (399 aa) fasta scores: E(): 1e-114%2C 69.27 38d in 397 aa and to Fusobacterium nucleatum 5-methylthioribose kinase fn1412 SWALL:AAL95605 (EMBL:AE010646) (384 aa) fasta scores: E(): 3.3e-39%2C 31.62 38d in 389 aa gene gene3177 http://www.ncbi.nlm.nih.gov/gene/?term=YE3228 YE3230 YE3230 YE3230 3524356 3525396 + putative translation initiation factor Similar to many proteins involved in the methionine salvage pathway that resemble translation initiation factors including: Thermotoga maritima putative translation initiation factor EIF-2b tm0911 SWALL:E2B_THEMA (SWALL:Q9X013) (343 aa) fasta scores: E(): 4.1e-45%2C 45.37 38d in 335 aa%2C and to Xylella fastidiosa putative translation initiation factor EIF-2b xf2553 SWALL:E2B_XYLFA (SWALL:Q9PAG5) (354 aa) fasta scores: E(): 3.6e-43%2C 47.14 38d in 333 aa gene gene3178 http://www.ncbi.nlm.nih.gov/gene/?term=YE3230 YE3231 YE3231 YE3231 3525538 3526080 - e-2/e-2' protein Similar to many proteins involved in the methionine salvage pathway: Klebsiella oxytoca e-2/e-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 4.3e-56%2C 75.84 38d in 178 aa%2C Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 7.1e-40%2C 56.66 38d in 180 aa and to Xanthomonas campestris dioxygenase Xcc1819 SWALL:Q8P9N4 (EMBL:AE012284) (188 aa) fasta scores: E(): 3.2e-37%2C 52.8 id in 178 aa gene gene3179 http://www.ncbi.nlm.nih.gov/gene/?term=YE3231 YE3232 YE3232 MasA MasA 3526077 3526766 - bifunctional enolase-phosphatase E-1 enzyme Similar to many proteins involved in the methionine salvage pathway: Klebsiella oxytoca bifunctional enolase-phosphatase E-1 enzyme MasA SWALL:Q48389 (EMBL:U00148) (229 aa) fasta scores: E(): 4.3e-52%2C 65.5 id in 229 aa and to Pseudomonas aeruginosa enolase-phosphatase E-1 MasA or Pa1685 SWALL:Q9I340 (EMBL:AE004595) (249 aa) fasta scores: E(): 3.1e-36%2C52.94 38d in 204 aa gene gene3180 http://www.ncbi.nlm.nih.gov/gene/?term=YE3232 YE3233 YE3233 YE3233 3526763 3527452 - putative sugar aldolase Similar to many proteins involved in the methionine salvage pathway gene gene3181 http://www.ncbi.nlm.nih.gov/gene/?term=YE3233 YE3234 YE3234 YE3234 3527612 3528772 + putative aminotransferase Similar to many proteins involved in the methionine salvage pathway: to Escherichia coli hypothetical aminotransferase YbdL or B0600 SWALL:YBDL_ECOLI (SWALL:P77806) (386 aa) fasta scores: E(): 6.5e-121%2C75.38 38d in 386 aa gene gene3182 http://www.ncbi.nlm.nih.gov/gene/?term=YE3234 YE3235 YE3235 YE3235 3528760 3529530 + putative hydrolase gene gene3183 http://www.ncbi.nlm.nih.gov/gene/?term=YE3235 YE3237 YE3237 YE3237 3530422 3531585 + probable sugar transporter gene gene3184 http://www.ncbi.nlm.nih.gov/gene/?term=YE3237 YE3238 YE3238 YE3238 3531718 3532491 + putative amino acid transporter gene gene3185 http://www.ncbi.nlm.nih.gov/gene/?term=YE3238 YE3239 YE3239 YE3239 3532488 3532829 + putative membrane protein gene gene3186 http://www.ncbi.nlm.nih.gov/gene/?term=YE3239 YE3240 YE3240 emrR emrR 3533001 3533513 + MarR-family transcriptional regulatory protein gene gene3187 http://www.ncbi.nlm.nih.gov/gene/?term=YE3240 YE3241 YE3241 YE3241 3533561 3535027 + probable outer membrane efflux protein Similar to many outer membrane efflux proteins including: Pseudomonas aeruginosa probable outer membrane protein Pa5158 SWALL:Q9HU26 (EMBL:AE004928) (492 aa) fasta scores: E(): 9.4e-39%2C 32.84 38d in 481 aa%2C and to Vibrio cholerae multidrug resistance protein%2C putative vc1409 SWALL:Q9KS51 (EMBL:AE004219) (484 aa) fasta scores: E(): 3.9e-38%2C 30.8 38d in 474 aa gene gene3188 http://www.ncbi.nlm.nih.gov/gene/?term=YE3241 YE3242 YE3242 emrA emrA 3535043 3536215 + multidrug resistance protein A gene gene3189 http://www.ncbi.nlm.nih.gov/gene/?term=YE3242 YE3243 YE3243 emrB emrB 3536255 3537787 + multidrug resistance protein B gene gene3190 http://www.ncbi.nlm.nih.gov/gene/?term=YE3243 YE3244 YE3244 YE3244 3537879 3538985 - putative trna/rRNA methyltransferase Similar to many proposed methyltransferases: Yersinia pestis putative tRNA/rRNA methyltransferase Ypo3269 SWALL:Q8ZBW5 (EMBL:AJ414156) (388 aa) fasta scores: E(): 7.3e-112%2C 86.48 38d in 392 aa%2C Escherichia coli%2C and Escherichia coli O157:H7 hypothetical tRNA/rRNA methyltransferase yfif yfif or b2581 or z3865 or ecs3447 SWALL:YFIF_ECOLI (SWALL:P33635) (345 aa) fasta scores: E(): 3.3e-71%2C 62.59 38d in 377 aa and to Haemophilus influenzae hypothetical tRNA/rRNA methyltransferase Hi0424 SWALL:YFIF_HAEIN (SWALL:P44703) (351 aa) fasta scores: E(): 1.2e-31%2C 34.89 38d in 364 aa gene gene3191 http://www.ncbi.nlm.nih.gov/gene/?term=YE3244 YE3245 YE3245 trxC trxC 3539206 3539646 + thioredoxin 2 gene gene3192 http://www.ncbi.nlm.nih.gov/gene/?term=YE3245 YE3246 YE3246 YE3246 3539801 3540550 + conserved hypothetical protein gene gene3193 http://www.ncbi.nlm.nih.gov/gene/?term=YE3246 YE3247 YE3247 yfiQ yfiQ 3540603 3543245 + putative acetyltransferase gene gene3194 http://www.ncbi.nlm.nih.gov/gene/?term=YE3247 YE3248 YE3248 pssA pssA 3543420 3544778 + CDP-diacylglycerol--serine O-phosphatidyltransferase gene gene3195 http://www.ncbi.nlm.nih.gov/gene/?term=YE3248 YE3249 YE3249 YE3249 3544855 3545370 + insertion element IS1664 protein Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145) (178 aa) fasta scores: E(): 7.5e-14%2C 36.51 38d in 178 aa%2Cand to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1.2e-18%2C40.22 38d in 174 aa gene gene3196 http://www.ncbi.nlm.nih.gov/gene/?term=YE3249 YE3250 YE3250 YE3250 3545406 3546224 + putative transposase for IS1664 element Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa gene gene3197 http://www.ncbi.nlm.nih.gov/gene/?term=YE3250 YE3251 YE3251 YE3251 3546281 3546622 + putative exported protein Similar to Yersinia pestis KIM hypothetical protein Y0915 SWALL:AAM84497 (EMBL:AE013694) (113 aa) fasta scores: E(): 1.7e-39%2C 86.11 38d in 108 aa and to Yersinia pestis putative lipoprotein Ypo3274 SWALL:Q8ZBW0 (EMBL:AJ414156) (113 aa) fasta scores: E(): 1.7e-39%2C86.11 38d in 108 aa gene gene3198 http://www.ncbi.nlm.nih.gov/gene/?term=YE3251 YE3252 YE3252 YE3252 3552706 3553272 - conserved hypothetical protein gene gene3204 http://www.ncbi.nlm.nih.gov/gene/?term=YE3252 YE3253 YE3253 abc abc 3553459 3554490 + ABC transporter ATP-binding protein gene gene3205 http://www.ncbi.nlm.nih.gov/gene/?term=YE3253 YE3254 YE3254 YE3254 3554483 3555136 + ABC transporter permease protein gene gene3206 http://www.ncbi.nlm.nih.gov/gene/?term=YE3254 YE3255 YE3255 YE3255 3555331 3556146 + putative lipoprotein gene gene3207 http://www.ncbi.nlm.nih.gov/gene/?term=YE3255 YE3256 YE3256 rcsF rcsF 3556294 3556701 + putative lipoprotein gene gene3208 http://www.ncbi.nlm.nih.gov/gene/?term=YE3256 YE3257 YE3257 YE3257 3556698 3557405 + conserved hypothetical protein gene gene3209 http://www.ncbi.nlm.nih.gov/gene/?term=YE3257 YE3258 YE3258 proS proS 3557513 3559231 + prolyl-tRNA synthetase gene gene3210 http://www.ncbi.nlm.nih.gov/gene/?term=YE3258 YE3259 YE3259 cutF cutF 3559305 3559994 - putative copper homeostasis lipoprotein gene gene3211 http://www.ncbi.nlm.nih.gov/gene/?term=YE3259 YE3260 YE3260 YE3260 3560061 3560477 - conserved hypothetical protein gene gene3212 http://www.ncbi.nlm.nih.gov/gene/?term=YE3260 YE3261 YE3261 YE3261 3560480 3561028 - conserved hypothetical protein gene gene3213 http://www.ncbi.nlm.nih.gov/gene/?term=YE3261 YE3262 YE3262 YE3262 3561266 3561466 + conserved hypothetical protein gene gene3214 http://www.ncbi.nlm.nih.gov/gene/?term=YE3262 YE3263 YE3263 YE3263 3561453 3561713 + conserved hypothetical protein gene gene3215 http://www.ncbi.nlm.nih.gov/gene/?term=YE3263 YE3264 YE3264 YE3264 3561800 3562114 - putative cytochrome gene gene3216 http://www.ncbi.nlm.nih.gov/gene/?term=YE3264 YE3265 YE3265 YE3265 3562290 3563675 - conserved hypothetical protein gene gene3217 http://www.ncbi.nlm.nih.gov/gene/?term=YE3265 YE3266 YE3266 YE3266 3563677 3564075 - conserved hypothetical protein gene gene3218 http://www.ncbi.nlm.nih.gov/gene/?term=YE3266 YE3267 YE3267 ldcC ldcC 3564089 3566230 - lysine decarboxylase%2C constitutive Similar to Escherichia coli lysine decarboxylase%2Cconstitutive LdcC or LdcH or ldc or b0186 SWALL:DCLZ_ECOLI (SWALL:P52095) (713 aa) fasta scores: E(): 0%2C 75.88 38d in 709 aa and to Salmonella typhimurium lysine decarboxylase 2%2C constitutive LdcC or stm0234 SWALL:Q8ZRN7 (EMBL:AE008705) (713 aa) fasta scores: E(): 0%2C 76.3 38d in 709 aa gene gene3219 http://www.ncbi.nlm.nih.gov/gene/?term=YE3267 YE3268 YE3268 accA accA 3566535 3567494 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha gene gene3220 http://www.ncbi.nlm.nih.gov/gene/?term=YE3268 YE3269 YE3269 dnaE dnaE 3567507 3571022 - DNA polymerase III%2C alpha chain gene gene3221 http://www.ncbi.nlm.nih.gov/gene/?term=YE3269 YE3270 YE3270 rnhB rnhB 3571100 3571696 - ribonuclease HII gene gene3222 http://www.ncbi.nlm.nih.gov/gene/?term=YE3270 YE3271 YE3271 lpxB lpxB 3571693 3572877 - lipid-A-disaccharide synthase gene gene3223 http://www.ncbi.nlm.nih.gov/gene/?term=YE3271 YE3272 YE3272 lpxA lpxA 3572881 3573669 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase gene gene3224 http://www.ncbi.nlm.nih.gov/gene/?term=YE3272 YE3273 YE3273 fabZ fabZ 3573673 3574179 - (3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase (EC 4.2.1.-) gene gene3225 http://www.ncbi.nlm.nih.gov/gene/?term=YE3273 YE3274 YE3274 lpxD lpxD 3574463 3575485 - UDP-3-o-[3-hydroxymyristoyl] glucosamine N-acyltransferase gene gene3226 http://www.ncbi.nlm.nih.gov/gene/?term=YE3274 YE3275 YE3275 ompH ompH 3575489 3575986 - cationic 19 kDa outer membrane protein precursor gene gene3227 http://www.ncbi.nlm.nih.gov/gene/?term=YE3275 YE3276 YE3276 YE3276 3576144 3578528 - putative surface antigen gene gene3228 http://www.ncbi.nlm.nih.gov/gene/?term=YE3276 YE3277 YE3277 YE3277 3578565 3579920 - putative membrane protein gene gene3229 http://www.ncbi.nlm.nih.gov/gene/?term=YE3277 YE3278 YE3278 cdsA cdsA 3579949 3580797 - phosphatidate cytidylyltransferase gene gene3230 http://www.ncbi.nlm.nih.gov/gene/?term=YE3278 YE3279 YE3279 uppS uppS 3580807 3581565 - undecaprenyl pyrophosphate synthetase gene gene3231 http://www.ncbi.nlm.nih.gov/gene/?term=YE3279 YE3280 YE3280 dxr dxr 3581791 3582987 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase gene gene3232 http://www.ncbi.nlm.nih.gov/gene/?term=YE3280 YE3281 YE3281 frr frr 3583299 3583856 - ribosome recycling factor gene gene3233 http://www.ncbi.nlm.nih.gov/gene/?term=YE3281 YE3282 YE3282 pyrH pyrH 3583989 3584735 - uridylate kinase gene gene3234 http://www.ncbi.nlm.nih.gov/gene/?term=YE3282 YE3283 YE3283 tsf tsf 3585002 3585859 - elongation factor Ts gene gene3235 http://www.ncbi.nlm.nih.gov/gene/?term=YE3283 YE3284 YE3284 rpsB rpsB 3585988 3586713 - 30S ribosomal protein S2 gene gene3236 http://www.ncbi.nlm.nih.gov/gene/?term=YE3284 YE3285 YE3285 ampM ampM 3587074 3588033 + methionine aminopeptidase gene gene3237 http://www.ncbi.nlm.nih.gov/gene/?term=YE3285 YE3286 YE3286 glnD glnD 3588094 3590772 + [protein-PII] uridylyltransferase gene gene3238 http://www.ncbi.nlm.nih.gov/gene/?term=YE3286 YE3287 YE3287 dapD dapD 3590890 3591714 + 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase gene gene3239 http://www.ncbi.nlm.nih.gov/gene/?term=YE3287 YE3288 YE3288 YE3288 3591834 3592223 + conserved hypothetical protein gene gene3240 http://www.ncbi.nlm.nih.gov/gene/?term=YE3288 YE3289 YE3289 YE3289 3592375 3592824 - conserved hypothetical protein gene gene3241 http://www.ncbi.nlm.nih.gov/gene/?term=YE3289 YE3290 YE3290 YE3290 3592852 3593625 - Conserved hypothetical protein gene gene3242 http://www.ncbi.nlm.nih.gov/gene/?term=YE3290 YE3291 YE3291 YE3291 3593625 3593957 - conserved hypothetical protein gene gene3243 http://www.ncbi.nlm.nih.gov/gene/?term=YE3291 YE3292 YE3292 YE3292 3594117 3594914 - putative transposase for insertion element IS1669 Similar to Shigella sonnei insertion element IS600 hypothetical protein SWALL:YIS2_SHISO (SWALL:P16940) (272 aa) fasta scores: E(): 5.9e-25%2C 37.4 38d in 270 aa%2CPseudomonas aeruginosa hypothetical protein Pa0257 SWALL:Q9I6N2 (EMBL:AE004463) (263 aa) fasta scores: E(): 8.6e-70%2C 66.16 38d in 263 aa and to Porphyromonas gingivalis transposase Orf2 SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 9.8e-27%2C 37.26 38d in 271 aa gene gene3244 http://www.ncbi.nlm.nih.gov/gene/?term=YE3292 YE3293 YE3293 YE3293 3594932 3595246 - IS1669 hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2009A SWALL:Q8ZEY6 (EMBL:AJ414151) (104 aa) fasta scores: E(): 7e-31%2C 87.5 38d in 104 aa and in part to Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 3.9e-16%2C 53 38d in 100 aa gene gene3245 http://www.ncbi.nlm.nih.gov/gene/?term=YE3293 YE3294 YE3294 syd syd 3595938 3596489 - Syd protein Similar to Escherichia coli Syd protein known to interact with SecE%2C or Ydr or b2793 SWALL:SYDP_ECOLI (SWALL:P43526) (181 aa) fasta scores: E(): 3.2e-41%2C 59.11 id in 181 aa%2C and to Yersinia pestis KIM SyD protein Syd SWALL:AAM86696 (EMBL:AE013915) (183 aa) fasta scores: E(): 6.3e-63%2C 85.24 38d in 183 aa gene gene3247 http://www.ncbi.nlm.nih.gov/gene/?term=YE3294 YE3295 YE3295 YE3295 3596621 3597466 + conserved hypothetical protein gene gene3248 http://www.ncbi.nlm.nih.gov/gene/?term=YE3295 YE3296 YE3296 YE3296 3597680 3599044 + conserved hypothetical protein gene gene3249 http://www.ncbi.nlm.nih.gov/gene/?term=YE3296 YE3297 YE3297 xni xni 3599192 3599947 + exodeoxyribonuclease IX gene gene3250 http://www.ncbi.nlm.nih.gov/gene/?term=YE3297 YE3298 YE3298 YE3298 3600175 3601281 - conserved hypothetical protein gene gene3251 http://www.ncbi.nlm.nih.gov/gene/?term=YE3298 YE3299 YE3299 YE3299 3601274 3601669 - conserved hypothetical protein gene gene3252 http://www.ncbi.nlm.nih.gov/gene/?term=YE3299 YE3300 YE3300 gcvA gcvA 3601709 3602626 - glycine cleavage system transcriptional activator gene gene3253 http://www.ncbi.nlm.nih.gov/gene/?term=YE3300 YE3302 YE3302 YE3302 3603108 3603329 - lipoprotein Similar to Escherichia coli hypothetical lipoprotein YgdI precursor%2C or b2809 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 2.8e-19%2C 77.77 id in 72 aa%2Cand to Salmonella typhi possible lipoprotein Sty3150 SWALL:Q8Z409 (EMBL:AL627277) (72 aa) fasta scores: E(): 3.2e-14%2C 60.56 38d in 71 aa gene gene3254 http://www.ncbi.nlm.nih.gov/gene/?term=YE3302 YE3303 YE3303 YE3303 3603470 3604717 + putative aminotransferase class V gene gene3255 http://www.ncbi.nlm.nih.gov/gene/?term=YE3303 YE3304 YE3304 YE3304 3604737 3605177 + conserved hypothetical protein gene gene3256 http://www.ncbi.nlm.nih.gov/gene/?term=YE3304 YE3305 YE3305 YE3305 3605181 3605990 - conserved hypothetical protein gene gene3257 http://www.ncbi.nlm.nih.gov/gene/?term=YE3305 YE3306 YE3306 YE3306 3606105 3607277 - membrane-bound lytic murein transglycosylase A precursor gene gene3258 http://www.ncbi.nlm.nih.gov/gene/?term=YE3306 YE3307 YE3307 YE3307 3608095 3609345 - N-acetylmuramoyl-L-alanine amidase AmiC precursor gene gene3262 http://www.ncbi.nlm.nih.gov/gene/?term=YE3307 YE3308 YE3308 argA argA 3609580 3610905 + amino-acid acetyltransferase gene gene3263 http://www.ncbi.nlm.nih.gov/gene/?term=YE3308 YE3309 YE3309 recD recD 3610936 3612837 - exodeoxyribonuclease V alpha chain gene gene3264 http://www.ncbi.nlm.nih.gov/gene/?term=YE3309 YE3310 YE3310 recB recB 3612834 3616463 - exodeoxyribonuclease V beta chain gene gene3265 http://www.ncbi.nlm.nih.gov/gene/?term=YE3310 YE3311 YE3311 ptrA ptrA 3616460 3619351 - protease III precursor gene gene3266 http://www.ncbi.nlm.nih.gov/gene/?term=YE3311 YE3312 YE3312 recC recC 3619451 3622822 - exodeoxyribonuclease V gamma chain gene gene3267 http://www.ncbi.nlm.nih.gov/gene/?term=YE3312 YE3313 YE3313 YE3313 3622973 3623359 - conserved hypothetical protein Similar to many including: Yersinia pestis KIM hypothetical protein Y3167 SWALL:AAM86717 (EMBL:AE013918) (136 aa) fasta scores: E(): 2.8e-23%2C 60.74 38d in 107 aa%2CYersinia pestis putative prepilin peptidase dependent protein Ypo1017 SWALL:Q8ZH91 (EMBL:AJ414146) (136 aa) fasta scores: E(): 2.8e-23%2C 60.74 38d in 107 aa and to Escherichia coli O157:H7 prepilin peptidase dependent protein c ppdc or z4140 or ecs3680 SWALL:Q8X6M6 (EMBL:AE005511) (107 aa) fasta scores: E(): 2.3%2C 26.41 38d in 106 aa gene gene3268 http://www.ncbi.nlm.nih.gov/gene/?term=YE3313 YE3314 YE3314 YE3314 3623350 3623817 - putative membrane protein gene gene3269 http://www.ncbi.nlm.nih.gov/gene/?term=YE3314 YE3315 YE3315 YE3315 3623814 3624365 - putative prepilin peptidase dependent protein gene gene3270 http://www.ncbi.nlm.nih.gov/gene/?term=YE3315 YE3316 YE3316 YE3316 3624428 3624964 - putative exported protein Similar to many Salmonella typhimurium prepilin peptidase dependent protein A%2C putative component in type IV pilin biogenesis PpdA or Stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 1.8e-15%2C34.16 38d in 161 aa%2C Escherichia coli prepilin peptidase dependent protein A precursor ppda or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 3.7e-13%2C 32.02 38d in 153 aa and to Vibrio vulnificus type IV pilin PilA SWALL:Q8VVV3 (EMBL:AF439854) (147 aa) fasta scores: E(): 0.21%2C 27.69 38d in 65 aa gene gene3271 http://www.ncbi.nlm.nih.gov/gene/?term=YE3316 YE3317 YE3317 thyA thyA 3625196 3625990 - thymidylate synthase gene gene3272 http://www.ncbi.nlm.nih.gov/gene/?term=YE3317 YE3318 YE3318 lgt lgt 3625997 3626869 - prolipoprotein diacylglyceryl transferase gene gene3273 http://www.ncbi.nlm.nih.gov/gene/?term=YE3318 YE3319 YE3319 ptsP ptsP 3626997 3629243 - phosphoenolpyruvate-protein phosphotransferase gene gene3274 http://www.ncbi.nlm.nih.gov/gene/?term=YE3319 YE3320 YE3320 YE3320 3629256 3629783 - conserved hypothetical protein gene gene3275 http://www.ncbi.nlm.nih.gov/gene/?term=YE3320 YE3321 YE3321 YE3321 3629809 3630027 - conserved hypothetical protein gene gene3276 http://www.ncbi.nlm.nih.gov/gene/?term=YE3321 YE3322 YE3322 mutH mutH 3630481 3631167 + DNA mismatch repair protein gene gene3277 http://www.ncbi.nlm.nih.gov/gene/?term=YE3322 YE3323 YE3323 YE3323 3631264 3631980 + putative integral membrane protein Similar to many proteins of unknown function including: Salmonella typhimurium%2C and Salmonella typhi putative integral membrane transport protein YgdQ or Stm3006 or Sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 8.2e-73%2C 84.18 38d in 234 aa%2CEscherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YgdQ or b2832 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 2.7e-71%2C 83.33 38d in 234 aa and to Haemophilus influenzae hypothetical protein Hi0056 hi0056 SWALL:YGDQ_HAEIN (SWALL:P43932) (237 aa) fasta scores: E(): 5.2e-50%2C 60.68 38d in 234 aa gene gene3278 http://www.ncbi.nlm.nih.gov/gene/?term=YE3323 YE3324 YE3324 tas tas 3632131 3633171 + putative aldo/keto reductase-family protein gene gene3279 http://www.ncbi.nlm.nih.gov/gene/?term=YE3324 YE3325 YE3325 YE3325 3633371 3634390 + putative transposase for IS1667 Similar to Pseudomonas putida transposase Tnpa1 protein SWALL:Q9K2X6 (EMBL:AJ288911) (344 aa) fasta scores: E(): 1.9e-56%2C 45.64 38d in 344 aa and to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 3.8e-50%2C 42.16 38d in 332 aa gene gene3280 http://www.ncbi.nlm.nih.gov/gene/?term=YE3325 YE3326 YE3326 ygeD ygeD 3634844 3636058 - putative membrane protein gene gene3281 http://www.ncbi.nlm.nih.gov/gene/?term=YE3326 YE3327 YE3327 aas aas 3636055 3638211 - Aas bifunctional protein gene gene3282 http://www.ncbi.nlm.nih.gov/gene/?term=YE3327 YE3328 YE3328 YE3328 3638730 3639759 + putative transposase for IS1667 (pseudogene) Similar to Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 8.4e-49%2C 40.95 id in 337 aa and to Pseudomonas putida transposase TnpA SWALL:O85214 (EMBL:AF052750) (341 aa) fasta scores: E(): 4.6e-45%2C 44.57 38d in 341 aa. Note this CDS contains a frameshift mutation after codon 147. pseudogene gene3283 http://www.ncbi.nlm.nih.gov/gene/?term=YE3328 YE3330 YE3330 bisC bisC 3640131 3642389 - putative biotin sulfoxide reductas2 gene gene3284 http://www.ncbi.nlm.nih.gov/gene/?term=YE3330 YE3331 YE3331 galR galR 3642679 3643749 + galactose operon repressor gene gene3285 http://www.ncbi.nlm.nih.gov/gene/?term=YE3331 YE3332 YE3332 lysA lysA 3643768 3645030 - diaminopimelate decarboxylase gene gene3286 http://www.ncbi.nlm.nih.gov/gene/?term=YE3332 YE3333 YE3333 lysR lysR 3645197 3646150 + transcriptional activator protein LysR gene gene3287 http://www.ncbi.nlm.nih.gov/gene/?term=YE3333 YE3334 YE3334 YE3334 3646147 3647307 - putative sugar transport protein gene gene3288 http://www.ncbi.nlm.nih.gov/gene/?term=YE3334 YE3335 YE3335 YE3335 3647794 3648690 - LysR-family transcriptional regulatory protein gene gene3289 http://www.ncbi.nlm.nih.gov/gene/?term=YE3335 YE3336 YE3336 YE3336 3648798 3649685 + putative exported protein gene gene3290 http://www.ncbi.nlm.nih.gov/gene/?term=YE3336 YE3337 YE3337 YE3337 3649748 3650392 + conserved hypothetical protein gene gene3291 http://www.ncbi.nlm.nih.gov/gene/?term=YE3337 YE3338 YE3338 cheD cheD 3650397 3651938 - putative methyl-accepting chemotaxis protein gene gene3292 http://www.ncbi.nlm.nih.gov/gene/?term=YE3338 YE3339 YE3339 YE3339 3652152 3652598 - conserved hypothetical protein gene gene3293 http://www.ncbi.nlm.nih.gov/gene/?term=YE3339 YE3340 YE3340 YE3340 3652607 3653266 - possible reguatory protein Similar to many proteins including: Yersinia pestis putative regulatory membrane protein Ypo0804 SWALL:Q8ZHT0 (EMBL:AJ414144) (238 aa) fasta scores: E(): 9.2e-35%2C 50.5 id in 200 aa and to Yersinia pestis KIM hypothetical Y3192 SWALL:AAM86742 (EMBL:AE013920) (234 aa) fasta scores: E(): 1.8e-33%2C 50 38d in 196 aa gene gene3294 http://www.ncbi.nlm.nih.gov/gene/?term=YE3340 YE3341 YE3341 YE3341 3653688 3653705 - prepilin peptidase (fragment) pseudogene gene3295 http://www.ncbi.nlm.nih.gov/gene/?term=YE3341 YE3342 YE3342 YE3342 3654480 3654905 - putative exported protein no significant database hits gene gene3296 http://www.ncbi.nlm.nih.gov/gene/?term=YE3342 YE3343 YE3343 outL outL 3654920 3656116 - general secretion pathway protein L gene gene3297 http://www.ncbi.nlm.nih.gov/gene/?term=YE3343 YE3344 YE3344 outK outK 3656116 3657057 - general secretion pathway protein K gene gene3298 http://www.ncbi.nlm.nih.gov/gene/?term=YE3344 YE3344A YE3344A outJ outJ 3657072 3657665 - general secretion pathway protein J precursor Similar to Aeromonas hydrophila general secretion pathway protein J precursor ExeJ SWALL:GSPJ_AERHY (SWALL:P31739) (207 aa) fasta scores: E(): 1.8e-11%2C 27.36 id in 190 aa%2C Yersinia pestis general secretion pathway protein J Ypo0810 SWALL:Q8ZHS4 (EMBL:AJ414144) (198 aa) fasta scores: E(): 2.9e-22%2C 35.35 38d in 198 aa%2C and to Erwinia carotovora general secretion pathway protein j precursor outJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 1.7e-09%2C 24.6 38d in 191 aa gene gene3299 http://www.ncbi.nlm.nih.gov/gene/?term=YE3344A YE3345 YE3345 outI outI 3657658 3658020 - general secretion pathway protein I gene gene3300 http://www.ncbi.nlm.nih.gov/gene/?term=YE3345 YE3346 YE3346 outG outG 3658058 3658507 - general secretion pathway protein G gene gene3301 http://www.ncbi.nlm.nih.gov/gene/?term=YE3346 YE3347 YE3347 outF outF 3658527 3659735 - general secretion pathway protein Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 6.3e-52%2C 39.7 38d in 408 aa%2Cand to Escherichia coli putative general secretion pathway protein f hoff or hopf or b3327 SWALL:GSPF_ECOLI (SWALL:P41441) (398 aa) fasta scores: E(): 6.2e-50%2C 38.44 id in 398 aa gene gene3302 http://www.ncbi.nlm.nih.gov/gene/?term=YE3347 YE3348 YE3348 outE outE 3659722 3661203 - general secretion pathway protein E gene gene3303 http://www.ncbi.nlm.nih.gov/gene/?term=YE3348 YE3349 YE3349 outD outD 3661224 3663170 - general secretion pathway protein D gene gene3304 http://www.ncbi.nlm.nih.gov/gene/?term=YE3349 YE3350 YE3350 outC outC 3663207 3663728 - general secretion pathway protein C gene gene3305 http://www.ncbi.nlm.nih.gov/gene/?term=YE3350 YE3351 YE3351 YE3351 3663788 3664204 - conserved hypothetical protein gene gene3306 http://www.ncbi.nlm.nih.gov/gene/?term=YE3351 YE3352 YE3352 YE3352 3664902 3665657 - putative carbonic anhydrase gene gene3307 http://www.ncbi.nlm.nih.gov/gene/?term=YE3352 YE3353 YE3353 YE3353 3665807 3666190 - hypothetical protein Weakly similar to mant including: Lactococcus lactis hypothetical protein YweE or Ll2171 SWALL:Q9CDP8 (EMBL:AE006446) (92 aa) fasta scores: E(): 1e-13%2C 48.91 id in 92 aa%2C Clostridium acetobutylicum predicted transcriptional regulator Cac2934 SWALL:Q97F21 (EMBL:AE007790) (112 aa) fasta scores: E(): 1.9e-13%2C45.36 38d in 97 aa and to Clostridium acetobutylicum predicted transcriptional regulator Cac2568 SWALL:Q97G06 (EMBL:AE007754) (117 aa) fasta scores: E(): 2.7e-13%2C44.08 38d in 93 aa gene gene3308 http://www.ncbi.nlm.nih.gov/gene/?term=YE3353 YE3354 YE3354 YE3354 3666293 3667042 + putative oxidoreductase Similar to many including: Rhizobium loti glucose dehydrogenase Mlr5280 SWALL:Q98C63 (EMBL:AP003006) (250 aa) fasta scores: E(): 7e-30%2C 42 38d in 250 aa%2C Rhizobium meliloti putative dehydrogenasereductase%2C short-chain dehydrogenases/reductases protein Rb1165 or Smb20871 SWALL:Q92UG6 (EMBL:AL603646) (249 aa) fasta scores: E(): 4.9e-29%2C 41.29 38d in 247 aa and to Streptomyces coelicolor putative oxidoreductase Sco0111 or Scj11.40 SWALL:Q9RI66 (EMBL:AL109949) (250 aa) fasta scores: E(): 1.5e-26%2C 39.34 38d in 244 aa gene gene3309 http://www.ncbi.nlm.nih.gov/gene/?term=YE3354 YE3355 YE3355 YE3355 3667114 3667419 - conserved hypothetical protein Similar to several proteins of undefined function including: Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YccD or b0999 or z1417 or ecs1154 SWALL:YCCD_ECOLI (SWALL:P36660) (101 aa) fasta scores: E(): 4.8e-17%2C 52.04 38d in 98 aa and to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein YccD or Stm1111 or sty1147 SWALL:Q8XGQ8 (EMBL:AE008748) (101 aa) fasta scores: E(): 9e-15%2C 47.95 id in 98 aa gene gene3310 http://www.ncbi.nlm.nih.gov/gene/?term=YE3355 YE3356 YE3356 YE3356 3667426 3668379 - putative DNA-binding protein Similar to many DnaJ-like proteins including: Salmonella typhimurium%2C and Salmonella typhi curved DNA-binding protein CbpA or Stm1112 or Sty1148 SWALL:CBPA_SALTY (SWALL:O33916) (306 aa) fasta scores: E(): 3.1e-51%2C 64.66 38d in 317 aa and to Synechocystis sp. DNAJ-like protein Slr0093 SWALL:DNJH_SYNY3 (SWALL:P50027) (332 aa) fasta scores: E(): 7.6e-31%2C 36.79 38d in 337 aa gene gene3311 http://www.ncbi.nlm.nih.gov/gene/?term=YE3356 YE3357 YE3357 YE3357 3668569 3669651 - LacI-family regulatory protein gene gene3312 http://www.ncbi.nlm.nih.gov/gene/?term=YE3357 YE3358 YE3358 YE3358 3670044 3671351 + putative sugar transporter gene gene3313 http://www.ncbi.nlm.nih.gov/gene/?term=YE3358 YE3359 YE3359 YE3359 3671378 3673753 + putative glucosidase gene gene3314 http://www.ncbi.nlm.nih.gov/gene/?term=YE3359 YE3360 YE3360 YE3360 3673831 3674247 - conserved hypothetical protein Weakly similar to several including: Rhizobium loti hypothetical protein Mlr5159 SWALL:Q98CG5 (EMBL:AP003005) (135 aa) fasta scores: E(): 0.013%2C 28.46 38d in 137 aa and to Clostridium acetobutylicum hypothetical protein Cac1073 SWALL:Q97K48 (EMBL:AE007622) (152 aa) fasta scores: E(): 0.38%2C 28.05 38d in 139 aa gene gene3315 http://www.ncbi.nlm.nih.gov/gene/?term=YE3360 YE3361 YE3361 YE3361 3674381 3674851 + putative AsnC-family transcriptional regulator Similar to Pseudomonas putida LRP-family transcriptional regulators MdeR SWALL:O33467 (EMBL:D89015) (159 aa) fasta scores: E(): 5.1e-25%2C 43.87 38d in 155 aa%2CPseudomonas aeruginosa probable transcriptional regulator pa4508 SWALL:Q9HVR3 (EMBL:AE004864) (157 aa) fasta scores: E(): 7.7e-22%2C 41.78 38d in 146 aa and to Rhizobium loti transcriptional regulator Mll4830 SWALL:Q98D73 (EMBL:AP003005) (158 aa) fasta scores: E(): 6.3e-19%2C39.04 38d in 146 aa gene gene3316 http://www.ncbi.nlm.nih.gov/gene/?term=YE3361 YE3362 YE3362 YE3362 3675083 3676327 - conserved hypothetical protein Similar to Escherichia coli hypothetical protein YdaM or b1341 SWALL:YDAM_ECOLI (SWALL:P77302) (430 aa) fasta scores: E(): 8.4e-90%2C 53.38 38d in 414 aa gene gene3317 http://www.ncbi.nlm.nih.gov/gene/?term=YE3362 YE3363 YE3363 YE3363 3676410 3676805 - conserved hypothetical protein Similar to several proteins of undefined function including: Bacillus subtilis hypothetical protein YybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.2e-20%2C 46.82 38d in 126 aa and to Pseudomonas aeruginosa hypothetical protein Pa1325 SWALL:Q9I419 (EMBL:AE004562) (135 aa) fasta scores: E(): 2.1e-16%2C44.96 38d in 129 aa gene gene3318 http://www.ncbi.nlm.nih.gov/gene/?term=YE3363 YE3364 YE3364 arsC arsC 3677085 3677510 - arsenate reductase Similar to Escherichia coli arsenate reductase ArsC or ArsG or b3503 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.6e-47%2C 85.81 38d in 141 aa and to Acidiphilium multivorum arsenate reductase ArsC SWALL:ARSC_ACIMU (SWALL:O50595) (141 aa) fasta scores: E(): 7.7e-47%2C 84.39 38d in 141 aa gene gene3319 http://www.ncbi.nlm.nih.gov/gene/?term=YE3364 YE3365 YE3365 arsB arsB 3677524 3678813 - arsenical pump membrane protein gene gene3320 http://www.ncbi.nlm.nih.gov/gene/?term=YE3365 YE3366 YE3366 arsR arsR 3679048 3679398 - arsenical resistance operon repressor Similar to Escherichia coli arsenical resistance operon repressor ArsR SWALL:ARR1_ECOLI (SWALL:P15905) (117 aa) fasta scores: E(): 6.9e-42%2C 89.65 38d in 116 aa and to Salmonella typhimurium ArsR protein ArsR SWALL:BAB91569 (EMBL:AP005147) (117 aa) fasta scores: E(): 6.9e-42%2C89.65 38d in 116 aa gene gene3321 http://www.ncbi.nlm.nih.gov/gene/?term=YE3366 YE3367 YE3367 YE3367 3679643 3680785 - conserved hypothetical protein gene gene3322 http://www.ncbi.nlm.nih.gov/gene/?term=YE3367 YE3368 YE3368 YE3368 3681131 3681565 + conserved hypothetical protein The predicted product of this CDS encompasses two CDS previously published from Yersinia pestis. The N-terminus%2C to codon 78%2C is similar to Yersinia pestis hypothetical protein Ypo0876 ypo0876 SWALL:Q8ZHL5 (EMBL:AJ414145) (78 aa) fasta scores: E(): 1.3e-24%2C 93.59 id in 78 aa%2C and to Yersinia pestis KIM hypothetical y3258 SWALL:AAM86808 (EMBL:AE013927) (78 aa) fasta scores: E(): 1.3e-24%2C 93.59 38d in 78 aa%2C and the C-terminus%2C from codon 118%2C is similar to Yersinia pestis KIM hypothetical y3259 SWALL:AAM86809 (EMBL:AE013927) (110 aa) fasta scores: E(): 4.7e-06%2C 53.12 38d in 96 aa%2C and to Yersinia pestis hypothetical protein Ypo0877 ypo0877 SWALL:Q8ZHL4 (EMBL:AJ414145) (110 aa) fasta scores: E(): 4.7e-06%2C53.12 38d in 96 aa. gene gene3323 http://www.ncbi.nlm.nih.gov/gene/?term=YE3368 YE3369 YE3369 YE3369 3681558 3681698 + hypothetical protein doubtful CDS gene gene3324 http://www.ncbi.nlm.nih.gov/gene/?term=YE3369 YE3370 YE3370 YE3370 3682136 3682477 - putative inner membrane protein doubtful CDS with no significant database hits gene gene3325 http://www.ncbi.nlm.nih.gov/gene/?term=YE3370 YE3371 YE3371 YE3371 3682624 3683301 - hypothetical protein no significant database hits gene gene3326 http://www.ncbi.nlm.nih.gov/gene/?term=YE3371 YE3373 YE3373 YE3373 3684016 3685632 - putative integrase Similar to several including: Salmonella typhi possible integrase Sty3193 SWALL:Q8Z3Y1 (EMBL:AL627277) (548 aa) fasta scores: E(): 8e-139%2C 70.76 38d in 537 aa and to Rhizobium meliloti putative integrase/resolvase recombinase protein R00600 or Smc02297 SWALL:Q92S32 (EMBL:AL591784) (513 aa) fasta scores: E(): 3e-10%2C 26.57 id in 380 aa gene gene3327 http://www.ncbi.nlm.nih.gov/gene/?term=YE3373 YE3374 YE3374 lysS lysS 3686176 3687693 - lysyl-tRNA synthetase gene gene3329 http://www.ncbi.nlm.nih.gov/gene/?term=YE3374 YE3376 YE3376 prfB prfB 3687703 3688725 - peptide chain release factor 2 Similar to Escherichia coli peptide chain release factor 2 PrfB or SupK or b2891 SWALL:RF2_ECOLI (SWALL:P07012) (365 aa) fasta scores: E(): 7.7e-125%2C89.04 38d in 365 aa%2C Yersinia pestis peptide chain release factor 2 PrfB or Ypo0889 or Y3273 SWALL:Q8ZHK4 (EMBL:AJ414145) (366 aa) fasta scores: E(): 8.8e-133%2C95.35 38d in 366 aa and to Salmonella typhimurium%2C and Salmonella typhi peptide chain release factor 2 PrfB or Stm3041 or Sty3197 SWALL:RF2_SALTY (SWALL:P28353) (365 aa) fasta scores: E(): 2.2e-125%2C 89.58 38d in 365 aa. Contains an in-frame premature opal (UGA) termination codon (following codon 25) followed by a frameshift. Orthologues also contain a nonsense mutation and a frameshift. Autogenous suppression of the nonsense mutation has been shown in the E. coli and S. typhimurium. gene gene3330 http://www.ncbi.nlm.nih.gov/gene/?term=YE3376 YE3378 YE3378 recJ recJ 3689253 3690986 - single-stranded-DNA-specific exonuclease gene gene3331 http://www.ncbi.nlm.nih.gov/gene/?term=YE3378 YE3379 YE3379 dsbC dsbC 3690993 3691709 - thiol:disulfide interchange protein (DsbC) gene gene3332 http://www.ncbi.nlm.nih.gov/gene/?term=YE3379 YE3380 YE3380 xerD xerD 3691758 3692657 - integrase/recombinase gene gene3333 http://www.ncbi.nlm.nih.gov/gene/?term=YE3380 YE3381 YE3381 fldB fldB 3692763 3693284 + flavodoxin 2 gene gene3334 http://www.ncbi.nlm.nih.gov/gene/?term=YE3381 YE3382 YE3382 creD creD 3693343 3694764 - putative membrane protein gene gene3335 http://www.ncbi.nlm.nih.gov/gene/?term=YE3382 YE3383 YE3383 creC creC 3694856 3696283 - putative histidine kinase sensor gene gene3336 http://www.ncbi.nlm.nih.gov/gene/?term=YE3383 YE3384 YE3384 creB creB 3696294 3696992 - putative response regulator gene gene3337 http://www.ncbi.nlm.nih.gov/gene/?term=YE3384 YE3385 YE3385 YE3385 3696992 3697417 - conserved hypothetical protein gene gene3338 http://www.ncbi.nlm.nih.gov/gene/?term=YE3385 YE3386 YE3386 YE3386 3697398 3697664 - conserved hypothetical protein gene gene3339 http://www.ncbi.nlm.nih.gov/gene/?term=YE3386 YE3387 YE3387 YE3387 3698059 3699051 + conserved hypothetical protein gene gene3340 http://www.ncbi.nlm.nih.gov/gene/?term=YE3387 YE3388 YE3388 YE3388 3699105 3699677 - putative hemolysin III gene gene3341 http://www.ncbi.nlm.nih.gov/gene/?term=YE3388 YE3389 YE3389 YE3389 3700019 3700621 + conserved hypothetical protein Similar to several of undefined function e.g. Deinococcus radiodurans hypothetical protein Dr0704 SWALL:Q9RWG4 (EMBL:AE001927) (198 aa) fasta scores: E(): 5.8e-22%2C 39.08 38d in 197 aa and Halobacterium sp. ygl101w SWALL:O52019 (EMBL:AF016485) (203 aa) fasta scores: E(): 2.2e-06%2C 27.6 38d in 192 aa gene gene3342 http://www.ncbi.nlm.nih.gov/gene/?term=YE3389 YE3390 YE3390 YE3390 3700807 3701244 - conserved hypothetical protein gene gene3343 http://www.ncbi.nlm.nih.gov/gene/?term=YE3390 YE3391 YE3391 gcvP gcvP 3701556 3704435 - glycine dehydrogenase gene gene3344 http://www.ncbi.nlm.nih.gov/gene/?term=YE3391 YE3392 YE3392 gcsH gcsH 3704636 3705022 - glycine cleavage system H protein gene gene3345 http://www.ncbi.nlm.nih.gov/gene/?term=YE3392 YE3393 YE3393 gcvT gcvT 3705089 3706186 - aminomethyltransferase gene gene3346 http://www.ncbi.nlm.nih.gov/gene/?term=YE3393 YE3394 YE3394 visC visC 3706695 3707909 - putative monooxygenase gene gene3347 http://www.ncbi.nlm.nih.gov/gene/?term=YE3394 YE3395 YE3395 ubiH ubiH 3707997 3709166 - 2-octaprenyl-6-methoxyphenol hydroxylase gene gene3348 http://www.ncbi.nlm.nih.gov/gene/?term=YE3395 YE3396 YE3396 pepP pepP 3709170 3710483 - proline-specific aminopeptidase gene gene3349 http://www.ncbi.nlm.nih.gov/gene/?term=YE3396 YE3397 YE3397 YE3397 3710538 3711116 - putative exported protein gene gene3350 http://www.ncbi.nlm.nih.gov/gene/?term=YE3397 YE3398 YE3398 YE3398 3711500 3711829 + conserved hypothetical protein gene gene3351 http://www.ncbi.nlm.nih.gov/gene/?term=YE3398 YE3399 YE3399 YE3399 3712268 3712864 + putative 5-formyltetrahydrofolate cyclo-ligase-family protein gene gene3353 http://www.ncbi.nlm.nih.gov/gene/?term=YE3399 YE3400 YE3400 serA serA 3712960 3714201 - D-3-phosphoglycerate dehydrogenase gene gene3354 http://www.ncbi.nlm.nih.gov/gene/?term=YE3400 YE3401 YE3401 rpiA rpiA 3714515 3715177 - ribose 5-phosphate isomerase A gene gene3355 http://www.ncbi.nlm.nih.gov/gene/?term=YE3401 YE3402 YE3402 iciA iciA 3715398 3716291 + chromosome initiation inhibitor gene gene3356 http://www.ncbi.nlm.nih.gov/gene/?term=YE3402 YE3403 YE3403 yggE yggE 3716293 3717048 - putative exported protein gene gene3357 http://www.ncbi.nlm.nih.gov/gene/?term=YE3403 YE3405 YE3405 yggA yggA 3717259 3717876 - putative LysE type translocator gene gene3358 http://www.ncbi.nlm.nih.gov/gene/?term=YE3405 YE3406 YE3406 YE3406 3718184 3719053 - putative membrane protein gene gene3359 http://www.ncbi.nlm.nih.gov/gene/?term=YE3406 YE3407 YE3407 YE3407 3719323 3720792 - transposase for IS1668 Similar to many including: Thermoanaerobacter tengcongensis transposase Tte0515 SWALL:Q8RCC1 (EMBL:AE013022) (499 aa) fasta scores: E(): 1.5e-76%2C46.62 38d in 444 aa and to Streptococcus pyogenes transposase SWALL:Q9FB00 (EMBL:AB030747) (428 aa) fasta scores: E(): 2.1e-58%2C 39.53 38d in 430 aa gene gene3360 http://www.ncbi.nlm.nih.gov/gene/?term=YE3407 YE3408 YE3408 YE3408 3721000 3722502 - hypothetical protein no significant database hits gene gene3361 http://www.ncbi.nlm.nih.gov/gene/?term=YE3408 YE3409 YE3409 traM traM 3723246 3723641 - plasmid transfer protein Similar to many plasmid transfer-related proteins: Escherichia coli TraM protein SWALL:TRM8_ECOLI (SWALL:P33788) (127 aa) fasta scores: E(): 3e-14%2C 42.18 id in 128 aa and Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Enteritidis conjugative transfer: mating signal tram or pslt073 SWALL:Q93GP1 (EMBL:AE006471) (126 aa) fasta scores: E(): 6.6e-10%2C38.21 38d in 123 aa gene gene3362 http://www.ncbi.nlm.nih.gov/gene/?term=YE3409 YE3411 YE3411 YE3411 3724129 3724566 + hypothetical protein Similar to many plasmid related proteins including: Escherichia coli plasmid x polypeptide YubQ or YgfA or x or 19 SWALL:X19F_ECOLI (SWALL:P47737) (169 aa) fasta scores: E(): 1.7e-32%2C 62.12 38d in 132 aa%2C Plasmid R100 protein X SWALL:BAA78847 (EMBL:AP000342) (169 aa) fasta scores: E(): 2e-32%2C 62.59 38d in 131 aa. Also similar to Escherichia coli PilT SWALL:Q93D61 (EMBL:AF399919) (175 aa) fasta scores: E(): 3.1e-18%2C 48.48 38d in 132 aa gene gene3363 http://www.ncbi.nlm.nih.gov/gene/?term=YE3411 YE3412 YE3412 YE3412 3724618 3726087 - transposase for IS1668 Similar to many including: Thermoanaerobacter tengcongensis transposase Tte0515 SWALL:Q8RCC1 (EMBL:AE013022) (499 aa) fasta scores: E(): 3.7e-77%2C46.62 38d in 444 aa and to Streptococcus pyogenes transposase SWALL:Q9FB00 (EMBL:AB030747) (428 aa) fasta scores: E(): 4.8e-59%2C 39.76 38d in 430 aa gene gene3364 http://www.ncbi.nlm.nih.gov/gene/?term=YE3412 YE3413 YE3413 fbaA fbaA 3726210 3727289 - fructose-bisphosphate aldolase class II gene gene3365 http://www.ncbi.nlm.nih.gov/gene/?term=YE3413 YE3414 YE3414 pgk pgk 3727548 3728711 - phosphoglycerate kinase gene gene3366 http://www.ncbi.nlm.nih.gov/gene/?term=YE3414 YE3415 YE3415 epd epd 3728815 3729831 - D-erythrose 4-phosphate dehydrogenase gene gene3367 http://www.ncbi.nlm.nih.gov/gene/?term=YE3415 YE3416 YE3416 tktA tktA 3730171 3732165 - transketolase 1 gene gene3368 http://www.ncbi.nlm.nih.gov/gene/?term=YE3416 YE3417 YE3417 YE3417 3732460 3733212 + putative lipoprotein gene gene3369 http://www.ncbi.nlm.nih.gov/gene/?term=YE3417 YE3418 YE3418 YE3418 3733285 3733605 - putative Rieske protein gene gene3370 http://www.ncbi.nlm.nih.gov/gene/?term=YE3418 YE3419 YE3419 speA speA 3733933 3735912 - biosynthetic arginine decarboxylase gene gene3371 http://www.ncbi.nlm.nih.gov/gene/?term=YE3419 YE3421 YE3421 metK metK 3736915 3738069 + S-adenosylmethionine synthetase gene gene3372 http://www.ncbi.nlm.nih.gov/gene/?term=YE3421 YE3422 YE3422 YE3422 3738135 3738554 - probable membrane protein Similar to Ralstonia solanacearum probable transmembrane protein Rsc0437 or Rs03406 SWALL:Q8Y299 (EMBL:AL646059) (137 aa) fasta scores: E(): 1.6e-26%2C58.39 38d in 137 aa%2C and to uncultured proteobacterium conserved hypothetical protein ebac000-60d04.57 SWALL:AAM48689 (EMBL:AE008921) (141 aa) fasta scores: E(): 6.1e-21%2C 47.48 38d in 139 aa gene gene3373 http://www.ncbi.nlm.nih.gov/gene/?term=YE3422 YE3422A YE3422A YE3422A 3738571 3739002 - probable membrane protein Similar to many proteins of undefined function including: Pseudomonas putida YeeE/YedE family protein pp3295 SWALL:AAN68902 (EMBL:AE016786) (159 aa) fasta scores: E(): 1.2e-26%2C 53.14 38d in 143 aa and to Ralstonia solanacearum probable transmembrane protein rsc0438 or rs03407 SWALL:Q8Y298 (EMBL:AL646059) (144 aa) fasta scores: E(): 6.3e-23%2C 53.52 38d in 142 aa gene gene3374 http://www.ncbi.nlm.nih.gov/gene/?term=YE3422A YE3423 YE3423 YE3423 3738999 3739304 - ArsR-family transcriptional regulator Similar to Vibrio cholerae transcriptional activator HlyU or vc0678 SWALL:HLYU_VIBCH (SWALL:P52695) (108 aa) fasta scores: E(): 6.1e-12%2C 47.25 38d in 91 aa%2Cand to Ralstonia solanacearum probable transcription regulator protein rsc1543 or rs05230 SWALL:Q8XZ61 (EMBL:AL646065) (121 aa) fasta scores: E(): 4.1e-20%2C59.37 38d in 96 aa gene gene3375 http://www.ncbi.nlm.nih.gov/gene/?term=YE3423 YE3424 YE3424 YE3424 3739455 3739967 + conserved hypothetical protein gene gene3376 http://www.ncbi.nlm.nih.gov/gene/?term=YE3424 YE3425 YE3425 endA endA 3740064 3740771 + endonuclease I gene gene3377 http://www.ncbi.nlm.nih.gov/gene/?term=YE3425 YE3426 YE3426 YE3426 3740817 3741548 + conserved hypothetical protein gene gene3378 http://www.ncbi.nlm.nih.gov/gene/?term=YE3426 YE3427 YE3427 gshB gshB 3741574 3742527 + glutathione synthetase gene gene3379 http://www.ncbi.nlm.nih.gov/gene/?term=YE3427 YE3428 YE3428 YE3428 3742839 3743402 + conserved hypothetical protein gene gene3380 http://www.ncbi.nlm.nih.gov/gene/?term=YE3428 YE3429 YE3429 YE3429 3743402 3743824 + conserved hypothetical protein gene gene3381 http://www.ncbi.nlm.nih.gov/gene/?term=YE3429 YE3430 YE3430 YE3430 3744006 3744890 + putative carbon-nitrogen hydrolase gene gene3382 http://www.ncbi.nlm.nih.gov/gene/?term=YE3430 YE3431 YE3431 YE3431 3744972 3746018 + conserved hypothetical protein gene gene3383 http://www.ncbi.nlm.nih.gov/gene/?term=YE3431 YE3432 YE3432 YE3432 3746333 3747385 - conserved hypothetical protein gene gene3384 http://www.ncbi.nlm.nih.gov/gene/?term=YE3432 YE3433 YE3433 YE3433 3747486 3748181 + conserved hypothetical protein gene gene3385 http://www.ncbi.nlm.nih.gov/gene/?term=YE3433 YE3434 YE3434 proC proC 3748217 3749038 + putative pyrroline-5-carboxylate reductase gene gene3386 http://www.ncbi.nlm.nih.gov/gene/?term=YE3434 YE3435 YE3435 yggT yggT 3749167 3749721 + putative membrane protein gene gene3387 http://www.ncbi.nlm.nih.gov/gene/?term=YE3435 YE3436 YE3436 YE3436 3749718 3750008 + conserved hypothetical protein gene gene3388 http://www.ncbi.nlm.nih.gov/gene/?term=YE3436 YE3437 YE3437 YE3437 3750245 3750838 + conserved hypothetical protein gene gene3389 http://www.ncbi.nlm.nih.gov/gene/?term=YE3437 YE3438 YE3438 YE3438 3750831 3751961 + putative oxygen-independent coproporphyrinogen III oxidase gene gene3390 http://www.ncbi.nlm.nih.gov/gene/?term=YE3438 YE3439 YE3439 YE3439 3752051 3752791 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty3262 SWALL:Q8Z3U3 (EMBL:AL627277) (239 aa) fasta scores: E(): 1.8e-50%2C 62.86 38d in 237 aa%2C and to Salmonella typhimurium putative periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 3.5e-50%2C 62.44 38d in 237 aa gene gene3391 http://www.ncbi.nlm.nih.gov/gene/?term=YE3439 YE3440 YE3440 YE3440 3752894 3753796 - putative glutaminase gene gene3392 http://www.ncbi.nlm.nih.gov/gene/?term=YE3440 YE3441 YE3441 YE3441 3753950 3754276 - conserved hypothetical protein gene gene3393 http://www.ncbi.nlm.nih.gov/gene/?term=YE3441 YE3442 YE3442 YE3442 3754276 3754995 - Putative methyltransferase gene gene3394 http://www.ncbi.nlm.nih.gov/gene/?term=YE3442 YE3443 YE3443 mutY mutY 3755473 3756561 + A/G-specific adenine glycosylase gene gene3395 http://www.ncbi.nlm.nih.gov/gene/?term=YE3443 YE3444 YE3444 YE3444 3756626 3756898 + conserved hypothetical protein gene gene3396 http://www.ncbi.nlm.nih.gov/gene/?term=YE3444 YE3445 YE3445 mltC mltC 3757024 3758112 + membrane-bound lytic murein transglycosylase C gene gene3397 http://www.ncbi.nlm.nih.gov/gene/?term=YE3445 YE3446 YE3446 YE3446 3758283 3759032 + putative membrane protein Similar to Pseudomonas aeruginosa hypothetical protein Pa3775 SWALL:Q9HXM0 (EMBL:AE004796) (260 aa) fasta scores: E(): 2.5e-36%2C 44.35 38d in 248 aa%2C and to Escherichia coli O157:H7 z5415 protein z5415 or ecs4801 SWALL:Q8X8E6 (EMBL:AE005619) (291 aa) fasta scores: E(): 9.4e-09%2C 24.58 38d in 240 aa gene gene3398 http://www.ncbi.nlm.nih.gov/gene/?term=YE3446 YE3447 YE3447 speC speC 3759101 3761263 - ornithine decarboxylase gene gene3399 http://www.ncbi.nlm.nih.gov/gene/?term=YE3447 YE3450 YE3450 YE3450 3762254 3763237 - phage integrase gene gene3401 http://www.ncbi.nlm.nih.gov/gene/?term=YE3450 YE3451 YE3451 YE3451 3763267 3764463 - conserved hypothetical protein Similar to Xanthomonas campestris pv. campestris str. ATCC 33913 conserved hypothetical protein xcc3121 SWALL:AAM42392 (EMBL:AE012427) (340 aa) fasta scores: E(): 6.5e-22%2C 35.71 38d in 252 aa%2C and to Salmonella typhi hypothetical protein Sty4665 sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 8.2e-25%2C26.57 38d in 493 aa gene gene3402 http://www.ncbi.nlm.nih.gov/gene/?term=YE3451 YE3452 YE3452 YE3452 3764827 3765171 + hypothetical protein No significant database matches gene gene3403 http://www.ncbi.nlm.nih.gov/gene/?term=YE3452 YE3453 YE3453 YE3453 3765220 3765561 - hypothetical protein Weakly similar to Rattus norvegicus von ebner's gland protein 1 precursor VegP1 or VegP SWALL:VEG1_RAT (SWALL:P20289) (177 aa) fasta scores: E(): 4%2C 26.54 38d in 113 aa gene gene3404 http://www.ncbi.nlm.nih.gov/gene/?term=YE3453 YE3454 YE3454 YE3454 3765558 3767960 - putative hemolysin Similar to the C-terminal regions of Yersinia pestis putative hemolysin ypo2490 SWALL:Q8ZDR6 (EMBL:AJ414152) (2535 aa) fasta scores: E(): 4.6e-143%2C67.09 38d in 702 aa%2C and to Yersinia pestis putative adhesin ypo0599 SWALL:Q8ZIA8 (EMBL:AJ414143) (3295 aa) fasta scores: E(): 3e-102%2C 60.92 38d in 563 aa gene gene3405 http://www.ncbi.nlm.nih.gov/gene/?term=YE3454 YE3455 YE3455 YE3455 3768609 3768686 + transposase for IS3-like insertion sequence (pseudogene) Similar to several including: Escherichia coli transposase InsE for insertion sequence IS3a/b/c/d/e/fa/fb SWALL:INSE_ECOLI (SWALL:P77681) (102 aa) fasta scores: E(): 2.4e-24%2C 80.8 38d in 99 aa and Salmonella typhimurium putative transposase Stm2768 SWALL:Q8ZMN6 (EMBL:AE008826) (99 aa) fasta scores: E(): 4e-25%2C 82.82 id in 99 aa. Note this CDS encodes a stop codon after codon 73. pseudogene gene3406 http://www.ncbi.nlm.nih.gov/gene/?term=YE3455 YE3456 YE3456 YE3456 3768683 3768922 + transposase for IS3-like insertion sequence (pseudogene) Similar to several including: Escherichia coli transposase InsF for insertion sequence IS3a/b/c/d/e/fa SWALL:INSF_ECOLI (SWALL:P05822) (288 aa) fasta scores: E(): 1e-19%2C 63.52 38d in 85 aa%2C and Shigella flexneri TnpB SWALL:Q9XCI3 (EMBL:AF141323) (130 aa) fasta scores: E(): 1e-24%2C 73.75 38d in 80 aa. Note this CDS has been deleted consequently its predicted product would lack the C-terminal 40 aa. pseudogene gene3407 http://www.ncbi.nlm.nih.gov/gene/?term=YE3456 YE3457 YE3457 YE3457 3769251 3769835 + putative membrane protein Weakly similar to Salmonella typhimurium PilK protein SWALL:O07369 (EMBL:AB027308) (196 aa) fasta scores: E(): 0.0016%2C 25.28 38d in 178 aa%2C and to Shigella sonnei PilK protein SWALL:Q9Z499 (EMBL:AB021078) (197 aa) fasta scores: E(): 0.0004%2C 26.92 38d in 182 aa gene gene3408 http://www.ncbi.nlm.nih.gov/gene/?term=YE3457 YE3458 YE3458 YE3458 3769900 3770802 - conserved hypothetical protein Similar to several proteins of undefined function including: Shigella sonnei YccB protein SWALL:Q9Z4E2 (EMBL:AB021078) (308 aa) fasta scores: E(): 1.9e-30%2C32.24 38d in 276 aa and to Salmonella typhimurium YfaB protein SWALL:BAB91618 (EMBL:AP005147) (308 aa) fasta scores: E(): 1.9e-30%2C 32.24 38d in 276 aa gene gene3409 http://www.ncbi.nlm.nih.gov/gene/?term=YE3458 YE3459 YE3459 YE3459 3770903 3771190 - hypothetical protein Weakly similar to several proteins of undefined function including: Escherichia coli hypothetical protein YkfI or b0245 SWALL:YKFI_ECOLI (SWALL:P77692) (113 aa) fasta scores: E(): 2e-08%2C 38.2 38d in 89 aa%2C and to Escherichia coli SWALL:Q9XB43 (EMBL:D83536) (108 aa) fasta scores: E(): 6.2e-08%2C 41.89 38d in 74 aa gene gene3410 http://www.ncbi.nlm.nih.gov/gene/?term=YE3459 YE3460 YE3460 YE3460 3771187 3772188 - hypothetical protein Similar in parts to several DNA primases including: Xylella fastidiosa DNA primase Xf2061 SWALL:Q9PBS8 (EMBL:AE004022) (1371 aa) fasta scores: E(): 1.9e-26%2C35.93 38d in 320 aa and to Escherichia coli DNA primase TraC SWALL:TRC5_ECOLI (SWALL:P27190) (1448 aa) fasta scores: E(): 1.6e-20%2C 35.71 38d in 322 aa gene gene3411 http://www.ncbi.nlm.nih.gov/gene/?term=YE3460 YE3461 YE3461 YE3461 3772593 3773480 - putative phage integrase gene gene3412 http://www.ncbi.nlm.nih.gov/gene/?term=YE3461 YE3462 YE3462 YE3462 3775095 3776192 + hypothetical protein no significant database hits gene gene3413 http://www.ncbi.nlm.nih.gov/gene/?term=YE3462 YE3463 YE3463 YE3463 3776189 3777172 + hypothetical protein no significant database hits gene gene3414 http://www.ncbi.nlm.nih.gov/gene/?term=YE3463 YE3464 YE3464 YE3464 3777495 3777758 + hypothetical protein no significant database hits gene gene3415 http://www.ncbi.nlm.nih.gov/gene/?term=YE3464 YE3465 YE3465 YE3465 3777818 3779338 - putative membrane protein Similar to Salmonella typhi putative membrane protein Sty4579 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 3.7e-95%2C 45.4 38d in 511 aa gene gene3416 http://www.ncbi.nlm.nih.gov/gene/?term=YE3465 YE3466 YE3466 YE3466 3779338 3780744 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty4577 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 3.2e-103%2C 63.08 38d in 447 aa gene gene3417 http://www.ncbi.nlm.nih.gov/gene/?term=YE3466 YE3467 YE3467 YE3467 3780765 3781718 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty4576 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 1.9e-86%2C 63.72 38d in 317 aa gene gene3418 http://www.ncbi.nlm.nih.gov/gene/?term=YE3467 YE3468 YE3468 YE3468 3781715 3782068 - hypothetical protein Similar in the C-terminus to Salmonella typhi hypothetical protein Sty4575 SWALL:Q8Z1J0 (EMBL:AL627282) (130 aa) fasta scores: E(): 1.7e-09%2C 53.62 38d in 69 aa gene gene3419 http://www.ncbi.nlm.nih.gov/gene/?term=YE3468 YE3472 YE3472 arsR2 arsR2 3783946 3784299 + arsenical resistance operon repressor gene gene3420 http://www.ncbi.nlm.nih.gov/gene/?term=YE3472 YE3472A YE3472A arsD arsD 3784346 3784708 + arsenical resistance operon trans-acting repressor Similar to Escherichia coli arsenical resistance operon trans-acting repressor ArsD SWALL:ARD1_ECOLI (SWALL:P46003) (120 aa) fasta scores: E(): 1.1e-43%2C 94.16 id in 120 aa and to Salmonella typhimurium ArsD protein SWALL:BAB91570 (EMBL:AP005147) (120 aa) fasta scores: E(): 5.1e-44%2C 95 38d in 120 aa gene gene3421 http://www.ncbi.nlm.nih.gov/gene/?term=YE3472A YE3473 YE3473 arsA2 arsA2 3784726 3786477 + arsenical pump-driving ATPase Highly similar to Escherichia coli arsenical pump-driving ATPase ArsA SWALL:ARA1_ECOLI (SWALL:P08690) (583 aa) fasta scores: E(): 1.1e-198%2C 95.71 38d in 583 aa and to Acidiphilium multivorum arsenical pump-driving ATPase arsA SWALL:ARSA_ACIMU (SWALL:O50593) (583 aa) fasta scores: E(): 6.7e-181%2C 87.6 38d in 581 aa gene gene3422 http://www.ncbi.nlm.nih.gov/gene/?term=YE3473 YE3474 YE3474 arsB2 arsB2 3786526 3787815 + arsenical pump membrane protein Highly similar to Escherichia coli%2C and Escherichia coli O157:H7 arsenical pump membrane protein ArsB or arsf or b3502 or z4904 or ecs4374 SWALL:ARSB_ECOLI (SWALL:P37310) (429 aa) fasta scores: E(): 4.1e-145%2C91.84 38d in 429 aa%2C Salmonella typhimurium ArsB protein SWALL:BAB91586 (EMBL:AP005147) (429 aa) fasta scores: E(): 1.3e-151%2C 96.27 38d in 429 aa gene gene3423 http://www.ncbi.nlm.nih.gov/gene/?term=YE3474 YE3475 YE3475 arsC2 arsC2 3787828 3788253 + arsenate reductase Highly similar to Escherichia coli arsenate reductase ArsC SWALL:ARC1_ECOLI (SWALL:P08692) (141 aa) fasta scores: E(): 7.1e-51%2C 93.61 38d in 141 aa%2CAcidiphilium multivorum arsenate reductase ArsC SWALL:ARSC_ACIMU (SWALL:O50595) (141 aa) fasta scores: E(): 2.8e-50%2C 93.61 38d in 141 aa and to Yersinia enterocolitica arsenate reductase ArsC SWALL:ARSC_YEREN (SWALL:P74984) (141 aa) fasta scores: E(): 1.8e-46%2C 85.1 id in 141 aa gene gene3424 http://www.ncbi.nlm.nih.gov/gene/?term=YE3475 YE3476 YE3476 tpn1330 tpn1330 3788299 3789492 - transposase for IS1330 Previously sequenced as Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 1.4e-162%2C99.49 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 6.8e-113%2C 68.26 38d in 397 aa gene gene3425 http://www.ncbi.nlm.nih.gov/gene/?term=YE3476 YE3477 YE3477 arsH arsH 3789694 3790404 - putative arsenic resistance protein Similar to Salmonella typhimurium ArsH arsenic resistance protein SWALL:BAB91594 (EMBL:AP005147) (216 aa) fasta scores: E(): 5.9e-81%2C 94.86 38d in 214 aa%2C and to Yersinia enterocolitica plasmid arsenic resistance protein ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 1.2e-70%2C 76.69 38d in 236 aa gene gene3426 http://www.ncbi.nlm.nih.gov/gene/?term=YE3477 YE3478 YE3478 YE3478 3790536 3790829 - conserved hypothetical protein Similar to Salmonella typhimurium hypothetical YcjA protein SWALL:BAB91595 (EMBL:AP005147) (107 aa) fasta scores: E(): 1.9e-34%2C 96.87 38d in 96 aa and to Rhizobium loti hypothetical protein Mll2166 SWALL:Q98J04 (EMBL:AP002999) (106 aa) fasta scores: E(): 4.3e-16%2C51.57 38d in 95 aa gene gene3427 http://www.ncbi.nlm.nih.gov/gene/?term=YE3478 YE3479 YE3479 YE3479 3790936 3792069 + putative membrane transport protein Similar to several including: Salmonella typhimurium YdaA hypothetical protein SWALL:BAB91596 (EMBL:AP005147) (377 aa) fasta scores: E(): 3e-117%2C 86.73 id in 377 aa and to Methanosarcina acetivorans hypothetical protein Ma3941 SWALL:AAM07292 (EMBL:AE011105) (323 aa) fasta scores: E(): 1.1e-11%2C 25.73 38d in 373 aa gene gene3428 http://www.ncbi.nlm.nih.gov/gene/?term=YE3479 YE3480 YE3480 ccdB ccdB 3792208 3792522 - cytotoxic protein Similar to several toxin/antitoxin system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 cytotoxic protein CcdB or LetB or G SWALL:CCDB_ECOLI (SWALL:P05703) (101 aa) fasta scores: E(): 4e-06%2C 36.63 id in 101 aa%2C Escherichia coli O157:H7 putative toxin of gyrase inhibiting toxin-antitoxin system z0057 or ecs0053 SWALL:Q8XA16 (EMBL:AE005182) (104 aa) fasta scores: E(): 9.4e-22%2C 54.8 38d in 104 aa and to Salmonella enterica subsp. enterica serovar Choleraesuis LetB letB SWALL:Q9EUE9 (EMBL:AB040415) (101 aa) fasta scores: E(): 4e-06%2C 33.65 38d in 104 aa gene gene3429 http://www.ncbi.nlm.nih.gov/gene/?term=YE3480 YE3481 YE3481 ccdA ccdA 3792525 3792761 - gyrase inhibitor antitoxin Similar to several toxin/antitoxin system proteins including: Escherichia coli%2C and Escherichia coli O157:H7 ccda protein CcdA or LetA or H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 0.013%2C 26.47 38d in 68 aa and to Escherichia coli O157:H7 putative antitoxin of gyrase inhibiting toxin-antitoxin system Z0056 or ecs0052 SWALL:Q8XA17 (EMBL:AE005182) (77 aa) fasta scores: E(): 1.6e-15%2C 60.52 38d in 76 aa gene gene3430 http://www.ncbi.nlm.nih.gov/gene/?term=YE3481 YE3482 YE3482 YE3482 3793238 3795880 - Conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4573 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 1.7e-214%2C 66.5 38d in 806 aa%2C and to Xanthomonas axonopodis hypothetical protein Xac2274 xac2274 SWALL:Q8PKA1 (EMBL:AE011864) (897 aa) fasta scores: E(): 2.9e-143%2C 52.44 38d in 900 aa gene gene3431 http://www.ncbi.nlm.nih.gov/gene/?term=YE3482 YE3483 YE3483 YE3483 3796042 3796446 - putative lipoprotein Similar in parts to Salmonella typhi putative lipoprotein Sty4571 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.1e-25%2C 54.26 38d in 129 aa gene gene3432 http://www.ncbi.nlm.nih.gov/gene/?term=YE3483 YE3484 YE3484 YE3484 3796456 3797913 - conserved hypothetical protein Similar to Salmonella typhi putative exported protein Sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 2.5e-68%2C 50.9 38d in 495 aa and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 4e-23%2C 39.8 38d in 412 aa gene gene3433 http://www.ncbi.nlm.nih.gov/gene/?term=YE3484 YE3485 YE3485 YE3485 3797961 3798827 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty4569 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 1.8e-54%2C 58.36 38d in 269 aa and to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 1e-40%2C 47.9 38d in 263 aa gene gene3434 http://www.ncbi.nlm.nih.gov/gene/?term=YE3485 YE3486 YE3486 YE3486 3798824 3799477 - putative membrane protein Similar to Salmonella typhi possible exported protein Sty4568 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.6e-64%2C 66.82 38d in 214 aa gene gene3435 http://www.ncbi.nlm.nih.gov/gene/?term=YE3486 YE3487 YE3487 YE3487 3799474 3799848 - putative inner membrane protein no significant database hits gene gene3436 http://www.ncbi.nlm.nih.gov/gene/?term=YE3487 YE3488 YE3488 YE3488 3799858 3800208 - putative exported protein no significant database hits gene gene3437 http://www.ncbi.nlm.nih.gov/gene/?term=YE3488 YE3489 YE3489 YE3489 3800224 3800472 - putative membrane protein no significant database hits gene gene3438 http://www.ncbi.nlm.nih.gov/gene/?term=YE3489 YE3490 YE3490 YE3490 3800469 3800777 - putative exported protein Similar to Salmonella typhi hypothetical protein Sty4564 SWALL:Q8Z1K0 (EMBL:AL627282) (90 aa) fasta scores: E(): 5.2e-16%2C 60.46 38d in 86 aa and to Pseudomonas putida putative transmembrane protein SWALL:Q8VMI7 (EMBL:AJ344068) (123 aa) fasta scores: E(): 3.8e-06%2C35.23 38d in 105 aa gene gene3439 http://www.ncbi.nlm.nih.gov/gene/?term=YE3490 YE3492 YE3492 YE3492 3801682 3802434 - putative inner membrane protein Similar to Salmonella typhi putative membrane protein Sty4563 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 5.3e-51%2C 52.38 38d in 252 aa and to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 7.1e-32%2C 40.75 38d in 238 aa gene gene3440 http://www.ncbi.nlm.nih.gov/gene/?term=YE3492 YE3493 YE3493 YE3493 3802434 3804554 - TraG-family protein Similar to Salmonella typhi hypothetical protein Sty4562 SWALL:Q8Z1K2 (EMBL:AL627282) (696 aa) fasta scores: E(): 2.1e-205%2C 72.19 38d in 694 aa and to Pseudomonas putida hypothetical 80.3 kDa protein SWALL:Q8VMJ3 (EMBL:AJ344068) (718 aa) fasta scores: E(): 2.7e-167%2C 61.37 38d in 699 aa. Also weakly similar to several putative plasmid-related CDS: Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 2.7e-29%2C 26.24 38d in 682 aa gene gene3441 http://www.ncbi.nlm.nih.gov/gene/?term=YE3493 YE3494 YE3494 YE3494 3804740 3805234 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 2.7e-23%2C 46.42 38d in 168 aa gene gene3442 http://www.ncbi.nlm.nih.gov/gene/?term=YE3494 YE3494A YE3494A YE3494A 3805258 3805806 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4559 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 1.5e-42%2C 58.65 38d in 179 aa gene gene3443 http://www.ncbi.nlm.nih.gov/gene/?term=YE3494A YE3495 YE3495 YE3495 3805875 3806642 - putative membrane protein Similar to Salmonella typhi putative exported protein Sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 4e-47%2C 51.82 38d in 247 aa and to Xanthomonas axonopodis hypothetical protein Xac2255 xac2255 SWALL:Q8PKC0 (EMBL:AE011862) (254 aa) fasta scores: E(): 3.6e-25%2C 37.75 38d in 241 aa gene gene3444 http://www.ncbi.nlm.nih.gov/gene/?term=YE3495 YE3495A YE3495A YE3495A 3806785 3807132 - hypothetical protein doubtful CDS with no significant database hits gene gene3445 http://www.ncbi.nlm.nih.gov/gene/?term=YE3495A YE3496 YE3496 YE3496 3807111 3807365 - hypothetical protein doubtful CDS with no significant database hits gene gene3446 http://www.ncbi.nlm.nih.gov/gene/?term=YE3496 YE3496A YE3496A YE3496A 3807520 3807876 + putative DNA-binding protein Similar to several putative transcriptional reguulators including: Serratia sp. 2-68 putative transcriptional regulator SWALL:AAM47490 (EMBL:AF468972) (88 aa) fasta scores: E(): 3e-14%2C 56.84 38d in 95 aa and to Vibrio cholerae transcriptional regulator%2C putative vc0176 SWALL:Q9KVH0 (EMBL:AE004108) (102 aa) fasta scores: E(): 5.2e-08%2C 54.93 38d in 71 aa gene gene3447 http://www.ncbi.nlm.nih.gov/gene/?term=YE3496A YE3497 YE3497 YE3497 3808031 3808951 - putative transposase Similar to Escherichia coli hypothetical protein YhgA or b3411 SWALL:YHGA_ECOLI (SWALL:P31667) (292 aa) fasta scores: E(): 4.4e-57%2C 54.66 38d in 300 aa%2C Yersinia pestis hypothetical protein Ypo0076 SWALL:Q8ZJL8 (EMBL:AJ414141) (319 aa) fasta scores: E(): 8.7e-83%2C71.56 38d in 306 aa%2C Salmonella typhimurium putative transposase Stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.8e-65%2C 56.27 38d in 311 aa and Escherichia coli hypothetical protein YadD or b0132 SWALL:YADD_ECOLI (SWALL:P31665) (300 aa) fasta scores: E(): 7.4e-54%2C 51.49 38d in 301 aa. Additional copies of this element are represented by YE1921%2C YE1924 and YE1655. There are also two partial sequences represented by YE1656 and YE1925. gene gene3448 http://www.ncbi.nlm.nih.gov/gene/?term=YE3497 YE3498 YE3498 YE3498 3809045 3810322 - putative type IV pilus protein Similar to Escherichia coli type IV pili shufflon protein b' SWALL:SHU4_ECOLI (SWALL:P09748) (444 aa) fasta scores: E(): 9.3e-29%2C 48.53 38d in 445 aa and to Salmonella typhi PilV or Sty4550 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 2.5e-71%2C 49 id in 400 aa gene gene3449 http://www.ncbi.nlm.nih.gov/gene/?term=YE3498 YE3499 YE3499 YE3499 3810326 3810994 - type IV prepilin peptidase Similar to many prepilin-like proteins including: Escherichia coli type 4 prepilin-like proteins leader peptide processing enzyme HofD or HopD or HopO or b3335 SWALL:LEP4_ECOLI (SWALL:P25960) (225 aa) fasta scores: E(): 0.00058%2C 28.07 38d in 228 aa%2C Salmonella typhimurium prepilin peptidase pilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 4.7e-14%2C 30.39 38d in 227 aa and to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 4.7e-14%2C30.39 38d in 227 aa gene gene3450 http://www.ncbi.nlm.nih.gov/gene/?term=YE3499 YE3500 YE3500 YE3500 3810991 3811578 - putative type IV prepilin Similar to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 1.1e-37%2C 56.61 38d in 189 aa and to Salmonella typhimurium type IV prepilin PilS SWALL:O07377 (EMBL:AB027308) (204 aa) fasta scores: E(): 2e-37%2C 56.08 38d in 189 aa gene gene3451 http://www.ncbi.nlm.nih.gov/gene/?term=YE3500 YE3501 YE3501 YE3501 3811593 3812702 - type IV pilus integral membrane protein Similar to Escherichia coli%2C and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 3.8e-71%2C50.82 38d in 364 aa%2C and to Escherichia coli PilR SWALL:Q93D63 (EMBL:AF399919) (365 aa) fasta scores: E(): 9.9e-30%2C 31.59 38d in 345 aa gene gene3452 http://www.ncbi.nlm.nih.gov/gene/?term=YE3501 YE3502 YE3502 YE3502 3812695 3814248 - putative type IV pilus protein Similar to Salmonella dublin nucleotide-binding type IV pili protein PilQ SWALL:Q9KHW5 (EMBL:AF247502) (571 aa) fasta scores: E(): 3.8e-99%2C 55.35 38d in 495 aa%2CSalmonella typhi PilQ or Sty4545 SWALL:Q9LBE1 (EMBL:AF000001) (571 aa) fasta scores: E(): 1.5e-98%2C54.94 38d in 495 aa%2C and to Escherichia coli PilQ protein SWALL:Q9F536 (EMBL:AP002527) (517 aa) fasta scores: E(): 4e-48%2C 41.3 38d in 523 aa gene gene3453 http://www.ncbi.nlm.nih.gov/gene/?term=YE3502 YE3502A YE3502A YE3502A 3814257 3814736 - putative type IV pilus protein Similar to Yersinia pseudotuberculosis PilP SWALL:AAL05420 (EMBL:AY047316) (164 aa) fasta scores: E(): 4.3e-34%2C 67.68 38d in 164 aa%2C Salmonella typhi%2C and Salmonella dublin PilP or Sty4544 SWALL:Q9RHF2 (EMBL:AF000001) (156 aa) fasta scores: E(): 1.6e-10%2C38.31 38d in 154 aa and to Escherichia coli PilP protein SWALL:Q9F535 (EMBL:AP002527) (171 aa) fasta scores: E(): 5.4e-05%2C 28.46 38d in 137 aa gene gene3454 http://www.ncbi.nlm.nih.gov/gene/?term=YE3502A YE3503 YE3503 YE3503 3814723 3816030 - putative type IV pilus protein Similar to Salmonella dublin%2C and Salmonella typhi PilO SWALL:Q9K2P9 (EMBL:AF247502) (428 aa) fasta scores: E(): 1.8e-39%2C 33.41 38d in 428 aa%2C and to Escherichia coli PilO protein SWALL:Q9F534 (EMBL:AP002527) (440 aa) fasta scores: E(): 4.7e-14%2C 22.97 38d in 431 aa gene gene3455 http://www.ncbi.nlm.nih.gov/gene/?term=YE3503 YE3504 YE3504 YE3504 3816033 3817721 - putative type IV pilus operon lipoprotein Similar to Escherichia coli%2C and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 4.1e-93%2C 49.81 38d in 550 aa. gene gene3456 http://www.ncbi.nlm.nih.gov/gene/?term=YE3504 YE3505 YE3505 YE3505 3817733 3818170 - putative type IV pilus operon exported poprotein Similar to Escherichia coli%2C and Salmonella typhimurium PilM protein SWALL:O07371 (EMBL:AB021078) (145 aa) fasta scores: E(): 6e-14%2C 33.56 38d in 146 aa and to Salmonella dublin PilM SWALL:Q9KHW6 (EMBL:AF247502) (139 aa) fasta scores: E(): 5.5e-12%2C 37.6 38d in 125 aa gene gene3457 http://www.ncbi.nlm.nih.gov/gene/?term=YE3505 YE3506 YE3506 YE3506 3818172 3819146 - putative type IV pilus operon lipoprotein Similar to Salmonella dublin%2C and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 7e-34%2C 44.33 38d in 406 aa and to Shigella sonnei lipoprotein PilL SWALL:Q9R2J1 (EMBL:AB021078) (355 aa) fasta scores: E(): 9.2e-19%2C 33.12 38d in 320 aa gene gene3458 http://www.ncbi.nlm.nih.gov/gene/?term=YE3506 YE3507 YE3507 YE3507 3819341 3819772 - conserved hypothetical protein Similar to several proteins of undefined function including: Ralstonia solanacearum SWALL:O82963 (EMBL:AB015669) (143 aa) fasta scores: E(): 5.4e-22%2C43.44 38d in 145 aa%2C and to Synechocystis sp. hypothetical protein Sll1692 SWALL:P73707 (EMBL:D90908) (145 aa) fasta scores: E(): 9.2e-20%2C 44.44 38d in 135 aa gene gene3459 http://www.ncbi.nlm.nih.gov/gene/?term=YE3507 YE3508 YE3508 YE3508 3819884 3820201 - hypothetical protein no significant database hits gene gene3460 http://www.ncbi.nlm.nih.gov/gene/?term=YE3508 YE3509 YE3509 YE3509 3820501 3821043 - hypothetical protein Similar in parts to Salmonella typhi hypothetical protein Sty4534 SWALL:Q8Z1L5 (EMBL:AL627282) (149 aa) fasta scores: E(): 1.2e-35%2C 62.23 38d in 143 aa and to Xylella fastidiosa hypothetical protein Xf1761 SWALL:Q9PCL7 (EMBL:AE003998) (375 aa) fasta scores: E(): 2.1e-10%2C 34.78 38d in 138 aa gene gene3461 http://www.ncbi.nlm.nih.gov/gene/?term=YE3509 YE3510 YE3510 YE3510 3821333 3822091 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4529 SWALL:Q8Z1L6 (EMBL:AL627282) (259 aa) fasta scores: E(): 6.8e-36%2C 46.38 38d in 235 aa and to Xylella fastidiosa hypothetical protein Xf1780 SWALL:Q9PCJ9 (EMBL:AE004000) (249 aa) fasta scores: E(): 5.1e-10%2C30.55 38d in 216 aa gene gene3462 http://www.ncbi.nlm.nih.gov/gene/?term=YE3510 YE3511 YE3511 YE3511 3822260 3823462 - conserved hypothetical protein Similar in parts to Salmonella typhi hypothetical protein Sty4528 SWALL:Q8Z1L7 (EMBL:AL627282) (447 aa) fasta scores: E(): 1.5e-49%2C 46.48 38d in 398 aa and to Xylella fastidiosa hypothetical protein Xf1781 SWALL:Q9PCJ8 (EMBL:AE004000) (418 aa) fasta scores: E(): 2e-26%2C 31.94 38d in 360 aa gene gene3463 http://www.ncbi.nlm.nih.gov/gene/?term=YE3511 YE3512 YE3512 YE3512 3823568 3824137 - conserved hypothetical protein gene gene3464 http://www.ncbi.nlm.nih.gov/gene/?term=YE3512 YE3513 YE3513 YE3513 3824134 3825720 - putative ATP/GTP binding protein Similar to Salmonella typhi hypothetical protein Sty4523 SWALL:Q8Z1M1 (EMBL:AL627282) (599 aa) fasta scores: E(): 7.5e-68%2C 45.22 38d in 597 aa and to Xylella fastidiosa hypothetical protein Xf1784 SWALL:Q9PCJ5 (EMBL:AE004000) (253 aa) fasta scores: E(): 9.3e-32%2C45.77 38d in 225 aa gene gene3465 http://www.ncbi.nlm.nih.gov/gene/?term=YE3513 YE3514 YE3514 dnaB2 dnaB2 3825720 3827087 - putative DNA helicase Similar to Escherichia coli replicative DNA helicase DnaB or GroP or GrpA or b4052 SWALL:DNAB_ECOLI (SWALL:P03005) (471 aa) fasta scores: E(): 2.7e-83%2C 53.44 id in 436 aa%2C Salmonella typhi DNA helicase Sty4522 SWALL:Q8Z1M2 (EMBL:AL627282) (454 aa) fasta scores: E(): 9.6e-92%2C 54.6 38d in 445 aa and to Salmonella typhimurium%2Cand Salmonella typhi replicative DNA helicase DnaB or Stm4246 or sty4442 SWALL:DNAB_SALTY (SWALL:P10338) (471 aa) fasta scores: E(): 4.9e-83%2C 53.65 38d in 438 aa gene gene3466 http://www.ncbi.nlm.nih.gov/gene/?term=YE3514 YE3515 YE3515 YE3515 3827080 3827961 - conserved hypothetical protein Similar to Xylella fastidiosa chromosome partitioning related protein Xf1785 SWALL:Q9PCJ4 (EMBL:AE004000) (291 aa) fasta scores: E(): 2.2e-29%2C42.04 38d in 283 aa and in part to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 2.6e-67%2C 59.45 38d in 291 aa gene gene3467 http://www.ncbi.nlm.nih.gov/gene/?term=YE3515 YE3516 YE3516 YE3516 3828311 3829272 - putative integrase (pseudogene) Similar to Salmonella typhi probable phage integrase Sty4666 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 5.5e-60%2C 47.84 38d in 324 aa and to Bacillus subtilis probable integrase/recombinase RipX SWALL:RIPX_BACSU (SWALL:P46352) (296 aa) fasta scores: E(): 0.00072%2C 22.65 38d in 309 aa. Note that this CDS contains a frameshift mutation following codon 109. Interestingly the framshift closely follows a poly A homopolymeric tract that could be a site for programed ribosomal frameshifting. pseudogene gene3468 http://www.ncbi.nlm.nih.gov/gene/?term=YE3516 YE3518 YE3518 YE3518 3829378 3829686 - putative exported protein no significant database hits gene gene3469 http://www.ncbi.nlm.nih.gov/gene/?term=YE3518 YE3519 YE3519 YE3519 3829958 3830125 + hypothetical protein doubtful CDS with no significant database hits gene gene3470 http://www.ncbi.nlm.nih.gov/gene/?term=YE3519 YE3520 YE3520 YE3520 3830294 3831526 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 1.7e-29%2C 27.18 38d in 526 aa and to Xylella fastidiosa hypothetical protein Xf1753 SWALL:Q9PCM5 (EMBL:AE003998) (616 aa) fasta scores: E(): 3.3e-26%2C36.23 38d in 218 aa gene gene3471 http://www.ncbi.nlm.nih.gov/gene/?term=YE3520 YE3521 YE3521 YE3521 3832233 3833516 - conserved hypothetical protein (pseudogene) Highly similar to the C-terminal region of both Xanthomonas axonopodis hypothetical protein Xac2274 SWALL:Q8PKA1 (EMBL:AE011864) (897 aa) fasta scores: E(): 8.5e-117%2C 59.28 38d in 533 aa and to Salmonella typhi hypothetical protein Sty4573 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 4.5e-75%2C 64.52 38d in 544 aa. The product of this CDS also displays significant sequence identity with the plasmid DNA-transfer genes of Vibrio cholerae sex pilus assembly TraC SWALL:AAL59681 (EMBL:AY055428) (799 aa) fasta scores: E(): 0.36%2C 22.95 id in 501 aa and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.36%2C 23.15 id in 501 aa. Note this CDS pppears to lack the N-terminal 360 aa. This CDS also carries a framshift mutation following codon 102. Also highly similar to the upstream CDS YE3482. pseudogene gene3472 http://www.ncbi.nlm.nih.gov/gene/?term=YE3521 YE3522 YE3522 YE3522 3833849 3835166 - Putative exported protein (pseudogene) Similar to Salmonella typhi putative exported protein Sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 3.1e-68%2C 53.37 38d in 459 aa and to Xanthomonas axonopodis hypothetical protein Xac2273 SWALL:Q8PKA2 (EMBL:AE011864) (490 aa) fasta scores: E(): 5.7e-39%2C 44.1 38d in 458 aa. Contains a stop after codon 117. Also highly similar to the upstream CDS 3484 pseudogene gene3473 http://www.ncbi.nlm.nih.gov/gene/?term=YE3522 YE3524 YE3524 YE3524 3835172 3835978 - putative transposase (fragment) Similar to Streptomyces coelicolor putative transposase sco6392 or sc3c8.11C SWALL:O69923 (EMBL:AL023861) (379 aa) fasta scores: E(): 2.7e-20%2C36.07 38d in 255 aa pseudogene gene3474 http://www.ncbi.nlm.nih.gov/gene/?term=YE3524 YE3524A YE3524A YE3524A 3836065 3836292 + hypothetical protein (remnant) pseudogene gene3475 http://www.ncbi.nlm.nih.gov/gene/?term=YE3524A YE3525 YE3525 YE3525 3836292 3836549 + Hypothetical protein Similar to Pantoea agglomerans putative transposase b SWALL:Q9AM89 (EMBL:AF327445) (279 aa) fasta scores: E(): 1.6e-19%2C 61.17 38d in 85 aa%2C and to Pseudomonas syringae pv.eriobotryae psvA gene and 3 orfs SWALL:Q9R9F1 (EMBL:AB018553) (160 aa) fasta scores: E(): 1.7e-17%2C 60 id in 80 aa%3B contains Pfam Integrase core domain gene gene3476 http://www.ncbi.nlm.nih.gov/gene/?term=YE3525 YE3526 YE3526 potE2 potE2 3836661 3837980 - putrescine-ornithine antiporter Similar to Escherichia coli putrescine-ornithine antiporter potE or b0692 SWALL:POTE_ECOLI (SWALL:P24170) (439 aa) fasta scores: E(): 1.3e-146%2C 86.72 38d in 437 aa gene gene3477 http://www.ncbi.nlm.nih.gov/gene/?term=YE3526 YE3527 YE3527 speF2 speF2 3838102 3840264 - ornithine decarboxylase%2C inducible Similar to Escherichia coli ornithine decarboxylase%2C inducible speF or b0693 SWALL:DCOS_ECOLI (SWALL:P24169) (732 aa) fasta scores: E(): 0%2C 75.97 38d in 720 aa%2C and to Salmonella typhimurium ornithine decarboxylase isozyme%2C inducible speF or stm0701 SWALL:Q8ZQW6 (EMBL:AE008728) (732 aa) fasta scores: E(): 0%2C 76.94 38d in 720 aa gene gene3478 http://www.ncbi.nlm.nih.gov/gene/?term=YE3527 YE3528 YE3528 YE3528 3841009 3842349 - putative membrane protein gene gene3479 http://www.ncbi.nlm.nih.gov/gene/?term=YE3528 YE3529 YE3529 YE3529 3842531 3844303 - putative membrane protein gene gene3480 http://www.ncbi.nlm.nih.gov/gene/?term=YE3529 YE3530 YE3530 YE3530 3844419 3845468 - putative HlyD family secretion protein gene gene3481 http://www.ncbi.nlm.nih.gov/gene/?term=YE3530 YE3531 YE3531 YE3531 3845478 3845804 - putative exported protein gene gene3482 http://www.ncbi.nlm.nih.gov/gene/?term=YE3531 YE3532 YE3532 YE3532 3845878 3847341 - hypothetical protein Weakly similar to several including: Rhizobium meliloti hypothetical protein Ra0920 or Sma1677 SWALL:Q92YG0 (EMBL:AE007278) (480 aa) fasta scores: E(): 1.5e-76%2C 54.61 38d in 423 aa%2C Saccharomyces cerevisiae hypothetical 35.9 kDa protein yjl213w or j0234 or hrc331 SWALL:YJV3_YEAST (SWALL:P40896) (331 aa) fasta scores: E(): 4.1e-29%2C 39.57 38d in 331 aa and to Sulfolobus solfataricus prolidase Sso2040 SWALL:Q97WS6 (EMBL:AE006811) (408 aa) fasta scores: E(): 2.8e-22%2C31.52 38d in 425 aa gene gene3483 http://www.ncbi.nlm.nih.gov/gene/?term=YE3532 YE3533 YE3533 acpY acpY 3847625 3847876 - hypothetical protein Previously sequenced as acpY gene gene3484 http://www.ncbi.nlm.nih.gov/gene/?term=YE3533 YE3534 YE3534 YE3534 3847876 3849801 - Serine rich protein Previously sequenced as yspA gene gene3485 http://www.ncbi.nlm.nih.gov/gene/?term=YE3534 YE3535 YE3535 yspD yspD 3850012 3851058 - hypothetical protein gene gene3486 http://www.ncbi.nlm.nih.gov/gene/?term=YE3535 YE3536 YE3536 yspC yspC 3851074 3852405 - membrane protein Previously sequenced as Yersinia enterocolitica YspC SWALL:Q93NK5 (EMBL:AF369954) (444 aa) fasta scores: E(): 2.3e-130%2C 94.59 38d in 444 aa. Also similar in parts to several others including: Caenorhabditis elegans hypothetical 56.9 kDa protein f53a3.4 SWALL:Q9TXQ5 (EMBL:AF025460) (545 aa) fasta scores: E(): 0.014%2C 21.68 id in 452 aa and to Streptococcus mutans glucan-binding protein B SWALL:Q938V2 (EMBL:AY046412) (432 aa) fasta scores: E(): 0.048%2C 22.18 38d in 311 aa gene gene3487 http://www.ncbi.nlm.nih.gov/gene/?term=YE3536 YE3537 YE3537 yspB yspB 3852424 3854454 - putative type III secretion system effector protein Previously sequenced as Yersinia enterocolitica Ysp1 or YspB SWALL:Q933M2 (EMBL:AF005744) (676 aa) fasta scores: E(): 4.2e-199%2C 97.18 38d in 676 aa. Also similar to Salmonella typhi type III secretion system effector protein SipB protein or Sty3008 SWALL:Q56134 (EMBL:X82670) (593 aa) fasta scores: E(): 1.6e-11%2C 23.72 38d in 628 aa and to Shigella flexneri 62 kDa membrane antigen ipaB SWALL:IPAB_SHIFL (SWALL:P18011) (580 aa) fasta scores: E(): 3.9e-10%2C 20.89 38d in 579 aa gene gene3488 http://www.ncbi.nlm.nih.gov/gene/?term=YE3537 YE3538 YE3538 sycB sycB 3854483 3854992 - putative type III secretion apparatus protein Previously sequenced as Yersinia enterocolitica type III secretion apparatus protein SycA or SycB SWALL:Q932S4 (EMBL:AF005744) (169 aa) fasta scores: E(): 1.2e-67%2C 97.63 38d in 169 aa. Also similar to Salmonella typhimurium%2C Salmonella typhi%2C and Salmonella dublin surface presentation of antigens protein SpaT or SicA or Stm2886 or sty3009 SWALL:SPAT_SALTY (SWALL:P40703) (165 aa) fasta scores: E(): 5e-32%2C 53.37 38d in 163 aa gene gene3489 http://www.ncbi.nlm.nih.gov/gene/?term=YE3538 YE3539 YE3539 ysaU ysaU 3855090 3856214 - putative type III secretion apparatus protein Previously sequenced as Yersinia enterocolitica type III secretion apparatus protein YsaU SWALL:Q9KKG9 (EMBL:AF005744) (374 aa) fasta scores: E(): 6.4e-138%2C97.59 38d in 374 aa. Also similar to Shigella flexneri type III secretion protein Spa40 SWALL:AAK18475 (EMBL:AF348706) (342 aa) fasta scores: E(): 5.1e-50%2C41.59 38d in 339 aa and to Salmonella typhimurium surface presentation of antigens protein SpaS or Stm2887 SWALL:SPAS_SALTY (SWALL:P40702) (356 aa) fasta scores: E(): 1.6e-47%2C 39.3 38d in 346 aa gene gene3490 http://www.ncbi.nlm.nih.gov/gene/?term=YE3539 YE3540 YE3540 ysaT ysaT 3856230 3857030 - putative type III secretion apparatus protein Previously sequenced as Yersinia enterocolitica type III secretion apparatus protein YsaT SWALL:Q9KKH0 (EMBL:AF005744) (266 aa) fasta scores: E(): 1.7e-97%2C 100 id in 266 aa. Also highly similar to Salmonella typhimurium surface presentation of antigens protein SpaRor Stm2888 SWALL:SPAR_SALTY (SWALL:P40701) (263 aa) fasta scores: E(): 1.3e-31%2C 39.35 38d in 249 aa gene gene3491 http://www.ncbi.nlm.nih.gov/gene/?term=YE3540 YE3541 YE3541 ysaS ysaS 3857030 3857299 - type III secretion apparatus protein Similar to Yersinia enterocolitica type III secretion apparatus protein YsaS SWALL:Q93NK6 (EMBL:AF369954) (89 aa) fasta scores: E(): 2.3e-29%2C 100 id in 89 aa%2C and to Salmonella typhimurium%2C Salmonella typhi%2C Salmonella dublin%2C Salmonella enteritidis%2CSalmonella gallinarum%2C Salmonella senftenberg%2C and Salmonella typhisuis surface presentation of antigens protein spaq spaq or stm2889 or sty3012 SWALL:SPAQ_SALTY (SWALL:P40704) (86 aa) fasta scores: E(): 9.3e-15%2C 53.57 id in 84 aa gene gene3492 http://www.ncbi.nlm.nih.gov/gene/?term=YE3541 YE3542 YE3542 ysaR ysaR 3857315 3857989 - type III secretion apparatus protein Similar to Yersinia enterocolitica type III secretion apparatus protein YsaR SWALL:Q93NK7 (EMBL:AF369954) (224 aa) fasta scores: E(): 5e-83%2C 100 38d in 224 aa%2C and to Salmonella typhimurium type III secretion apparatus protein SpaP SWALL:Q57175 (EMBL:U29360) (224 aa) fasta scores: E(): 2.4e-51%2C 60.98 id in 223 aa gene gene3493 http://www.ncbi.nlm.nih.gov/gene/?term=YE3542 YE3542A YE3542A ysaQ ysaQ 3857992 3858930 - type III secretion apparatus protein Similar to Yersinia enterocolitica type III secretion apparatus protein YsaQ SWALL:Q9KKH3 (EMBL:AF005744) (312 aa) fasta scores: E(): 4.5e-121%2C99.67 38d in 312 aa%2C and to Salmonella typhi surface presentation of antigens protein spaO or Sty3014 SWALL:SPAO_SALTI (SWALL:Q56022) (303 aa) fasta scores: E(): 4e-06%2C 24.75 38d in 311 aa gene gene3494 http://www.ncbi.nlm.nih.gov/gene/?term=YE3542A YE3543 YE3543 YE3543 3858930 3859997 - type III secretion protein The predicted product of this CDS encompasses two CDS previously published in this bacterium: Q9KKH4 and Q9KKH5 gene gene3495 http://www.ncbi.nlm.nih.gov/gene/?term=YE3543 YE3543A YE3543A YE3543A 3859969 3860424 - hypothetical protein Similar to Yersinia enterocolitica orf8 SWALL:Q9KKH6 (EMBL:AF005744) (151 aa) fasta scores: E(): 1.1e-45%2C 100 38d in 151 aa gene gene3496 http://www.ncbi.nlm.nih.gov/gene/?term=YE3543A YE3544 YE3544 ysaN ysaN 3860424 3861716 - type III secretion sytem protein Previously sequenced as Yersinia enterocolitica type III secretion sytem protein YsaN SWALL:O30438 (EMBL:AF005744) (465 aa) fasta scores: E(): 5.2e-164%2C99.76 38d in 421 aa. Note the differing sequence at the very C-termini. Also similar to Salmonella typhimurium%2Cand Salmonella typhi probable ATP synthase SpaL or InvC or Stm2894 or Sty3017 SWALL:SPAL_SALTY (SWALL:P39444) (431 aa) fasta scores: E(): 3.5e-89%2C 56.54 38d in 428 aa%2C and to Shigella flexneri%2C and Shigella sonnei probable ATP synthase SpaL/MxiB SpaL or Spa47 or MxiB SWALL:SPAL_SHIFL (SWALL:P35531) (430 aa) fasta scores: E(): 1.9e-78%2C 51.4 id in 426 aa gene gene3497 http://www.ncbi.nlm.nih.gov/gene/?term=YE3544 YE3545 YE3545 ysaK ysaK 3861720 3862127 - type III secretion sytem protein Previously sequenced as Yersinia enterocolitica type III secretion sytem protein YsaK SWALL:O30437 (EMBL:AF005744) (135 aa) fasta scores: E(): 8.2e-55%2C 100 id in 135 aa. Also similar to Sodalis glossinidius InvB SWALL:Q9EZ20 (EMBL:AF306649) (135 aa) fasta scores: E(): 5.1e-07%2C 29.63 38d in 135 aa and to Shigella sonnei surface presentation of antigens protein Spak or spa15 SWALL:SPAK_SHISO (SWALL:Q55296) (133 aa) fasta scores: E(): 0.00069%2C 26.15 38d in 130 aa gene gene3498 http://www.ncbi.nlm.nih.gov/gene/?term=YE3545 YE3546 YE3546 ysaV ysaV 3862139 3864211 - type III secretion system apparatus protein Previously sequenced as: Yersinia enterocolitica YsaV SWALL:O30436 (EMBL:AF005744) (690 aa) fasta scores: E(): 0%2C 100 38d in 690 aa. Also similar to Salmonella typhimurium%2C and Salmonella typhi invasion protein InvA inva or stm2896 or sty3019 SWALL:INVA_SALTY (SWALL:P35657) (685 aa) fasta scores: E(): 3.1e-136%2C 53.05 38d in 688 aa gene gene3499 http://www.ncbi.nlm.nih.gov/gene/?term=YE3546 YE3547 YE3547 ysaW ysaW 3864208 3865317 - type III secreted effector protein Previously sequenced as: Yersinia enterocolitica type III secreted effector protein%2C YsaW SWALL:Q9KKH7 (EMBL:AF005744) (373 aa) fasta scores: E(): 1.9e-120%2C90.13 38d in 365 aa%2C and to Salmonella enterica invasion protein invE SWALL:Q54031 (EMBL:U43259) (372 aa) fasta scores: E(): 4.9e-15%2C 27.27 38d in 341 aa. Note the differing N-terminal sequence with that previously published. gene gene3500 http://www.ncbi.nlm.nih.gov/gene/?term=YE3547 YE3548 YE3548 ysaC ysaC 3865308 3866999 - possible type III secretion system protein Previously sequenced as: Yersinia enterocolitica type III secreted effector protein%2C YsaC SWALL:Q9KKH8 (EMBL:AF005744) (525 aa) fasta scores: E(): 8.3e-190%2C97.9 38d in 524 aa. Note the differing sequence at the very C-terminus. Also similar to Salmonella typhimurium InvG protein precursor or Stm2898 SWALL:INVG_SALTY (SWALL:P35672) (562 aa) fasta scores: E(): 4.3e-72%2C 40.11 id in 526 aa gene gene3501 http://www.ncbi.nlm.nih.gov/gene/?term=YE3548 YE3549 YE3549 ysaE ysaE 3866989 3867669 - AraC family regulatory protein C-terminal region is highly similar to that previously sequenced: Yersinia enterocolitica hypothetical protein YsaE SWALL:Q9KKH9 (EMBL:AF005744) (138 aa) fasta scores: E(): 1.3e-51%2C 99.27 38d in 138 aa. Note the N-terminal extension of the product of this CDS compared to that previously published for Yersinia enterocolitica YsaE. The full length CDS is weakly similar to Salmonella typhimurium%2C and Salmonella typhi invasion protein InvF SWALL:INVF_SALTY (SWALL:P39437) (216 aa) fasta scores: E(): 3.6e-09%2C 26.75 38d in 228 aa. gene gene3502 http://www.ncbi.nlm.nih.gov/gene/?term=YE3549 YE3550 YE3550 YE3550 3867949 3869178 + hypothetical protein Weakly similar over the whole range to CDS associated with virulence including: Salmonella typhimurium protein required for invasion of epithelial cells PrgH or Stm2874 SWALL:PRGH_SALTY (SWALL:P41783) (392 aa) fasta scores: E(): 3.3e-11%2C 22.22 38d in 396 aa%2C and to Shigella flexneri and Shigella sonnei MxiG protein involved in the intracellular dissemination of shigella SWALL:MXIG_SHIFL (SWALL:Q57332) (371 aa) fasta scores: E(): 0.015%2C 21.05 38d in 399 aa. The N-terminus is identical to an internal region of Yersinia enterocolitica hypothetical protein Orf7 SWALL:Q9KKI0 (EMBL:AF005744) (168 aa) fasta scores: E(): 1.9e-28%2C 100 38d in 88 aa. Internal region is highly similar to the C-terminus of Yersinia enterocolitica hypothetical protein Orf6 SWALL:Q9KKI1 (EMBL:AF005744) (214 aa) fasta scores: E(): 3.1e-78%2C 98.59 38d in 214 aa. gene gene3503 http://www.ncbi.nlm.nih.gov/gene/?term=YE3550 YE3551 YE3551 YE3551 3869209 3869517 + hypothetical protein No significant database matches gene gene3504 http://www.ncbi.nlm.nih.gov/gene/?term=YE3551 YE3552 YE3552 ysaI ysaI 3869576 3869878 + putative virulence associated protein Highly similar to Yersinia enterocolitica hypothetical protein YsaI SWALL:Q9KKI2 (EMBL:AF005744) (100 aa) fasta scores: E(): 5.1e-35%2C 99 38d in 100 aa. C-terminus is similar to the C-terminal region of Salmonella typhi pathogenicity 1 island effector protein PrgJ or STY2993 SWALL:Q8Z4A1 (EMBL:AL627276) (101 aa) fasta scores: E(): 1%2C 30 38d in 60 aa gene gene3505 http://www.ncbi.nlm.nih.gov/gene/?term=YE3552 YE3553 YE3553 ysaJ ysaJ 3869882 3870625 + type III secretion system apparatus lipoprotein Previously sequenced as Yersinia enterocolitica type III secretion apparatus lipoprotein YsaJ SWALL:Q9KKI3 (EMBL:AF005744) (247 aa) fasta scores: E(): 1.4e-89%2C 100 id in 247 aa%2C and to Escherichia coli O157:H7 putative lipoprotein of type III secretion apparatus z4180 or ecs3716 SWALL:Q8X6G6 (EMBL:AE005514) (244 aa) fasta scores: E(): 1.8e-29%2C 42.41 38d in 224 aa gene gene3506 http://www.ncbi.nlm.nih.gov/gene/?term=YE3553 YE3554 YE3554 YE3554 3870622 3871170 + hypothetical protein No significant database matches to the full length CDS. N-terminus is highly similar to the N-terminal region of the previously sequenced Yersinia enterocolitica hypothetical protein SWALL:Q93NL2 (EMBL:AF369954) (191 aa) fasta scores: E(): 2.9e-60%2C 98.67 38d in 151 aa. gene gene3507 http://www.ncbi.nlm.nih.gov/gene/?term=YE3554 YE3555 YE3555 YE3555 3871205 3871849 + hypothetical protein Highly similar to Yersinia enterocolitica hypothetical protein SWALL:Q93NL3 (EMBL:AF369954) (230 aa) fasta scores: E(): 1.2e-76%2C 98.7 38d in 231 aa. Weakly similar to Salmonella typhimurium oxygen-regulated invasion protein orgB or STM2869 SWALL:ORGB_SALTY (SWALL:P58654) (226 aa) fasta scores: E(): 0.11%2C 22.92 38d in 205 aa gene gene3508 http://www.ncbi.nlm.nih.gov/gene/?term=YE3555 YE3556 YE3556 YE3556 3871917 3872288 + hypothetical protein Poor database matches. Similar to the C-terminal region of the previously sequenced Yersinia enterocolitica hypothetical protein Orf3 SWALL:Q9KKI6 (EMBL:AF005744) (212 aa) fasta scores: E(): 1.2e-53%2C 93.47 38d in 123 aa gene gene3509 http://www.ncbi.nlm.nih.gov/gene/?term=YE3556 YE3557 YE3557 ysaH ysaH 3872301 3872777 + possible type III secretion system effector protein Previously sequenced as:Yersinia enterocolitica hypothetical protein YsaH SWALL:Q9KKJ1 (EMBL:AF005744) (158 aa) fasta scores: E(): 1.6e-61%2C 99.36 38d in 158 aa. Also highly similar to Salmonella typhimurium type III secreted invasion protein IagB or STM2877 SWALL:IAGB_SALTY (SWALL:P43017) (160 aa) fasta scores: E(): 6.5e-13%2C 40.6 id in 133 aa. gene gene3510 http://www.ncbi.nlm.nih.gov/gene/?term=YE3557 YE3558 YE3558 YE3558 3872952 3873437 + putative membrane protein Identical to the previously sequenced: Yersinia enterocolitica Orf1 SWALL:Q9KKJ0 (EMBL:AF005744) (161 aa) fasta scores: E(): 1.3e-60%2C 100 38d in 161 aa. Similar to N-terminal region Salmonella typhimurium putative inner membrane protein STM0341 SWALL:Q8ZRH8 (EMBL:AE008710) (254 aa) fasta scores: E(): 4.1e-09%2C 31.44 38d in 159 aa gene gene3511 http://www.ncbi.nlm.nih.gov/gene/?term=YE3558 YE3559 YE3559 YE3559 3873442 3873876 + putative exported protein Similar to the C-terminal region Yersinia enterocolitica Orf2 SWALL:Q9KKI9 (EMBL:AF005744) (170 aa) fasta scores: E(): 3.1e-51%2C 99.3 38d in 144 aa%2C and to Vibrio cholerae lipoprotein-related protein vc1064 SWALL:Q9KT41 (EMBL:AE004188) (143 aa) fasta scores: E(): 0.46%2C 21.36 38d in 117 aa gene gene3512 http://www.ncbi.nlm.nih.gov/gene/?term=YE3559 YE3560 YE3560 ysrR ysrR 3873905 3874615 + response regulator protein Two-component regulatory system family%2C response regulator protein. Previously sequenced as Yersinia enterocolitica LuxR/UhpA family of transcriptional regulator YsrR SWALL:Q9KKI8 (EMBL:AF005744) (236 aa) fasta scores: E(): 1.5e-90%2C 98.72 38d in 236 aa. C-terminal region is similar Escherichia coli%2C and Escherichia coli O157:H7 fimbriae Z protein FimZ SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 4.1e-12%2C 33.33 id in 183 aa. Similar to YE3578%2C 81.356 38dentity (82.051 ungapped) in 236 aa overlap gene gene3513 http://www.ncbi.nlm.nih.gov/gene/?term=YE3560 YE3561 YE3561 ysrS ysrS 3874599 3876968 + sensor kinase protein Two-component regulatory system family%2C sensor kinase protein. Previously sequenced as Yersinia enterocolitica YsrS SWALL:Q9KKI7 (EMBL:AF005744) (791 aa) fasta scores: E(): 0%2C 99.62 38d in 789 aa. N-terminus region is similar to the N-terminal region of Burkholderia cepacia putative sensory protein CblE SWALL:AAL92877 (EMBL:AY082893) (717 aa) fasta scores: E(): 3.1e-25%2C27.15 38d in 556 aa. Similar to YE3579%2C 87.134 0dentity (87.35638ngapped) in 785 aa overlap. Note the large overlap with the upstream CDS. gene gene3514 http://www.ncbi.nlm.nih.gov/gene/?term=YE3561 YE3561A YE3561A YE3561A 3876961 3877209 + hypothetical protein Previously published: Yersinia enterocolitica OrfA SWALL:Q937S6 (EMBL:AF005744) (64 aa) fasta scores: E(): 5.2e-23%2C 100 38d in 64 aa%3B No significant database matches gene gene3515 http://www.ncbi.nlm.nih.gov/gene/?term=YE3561A YE3562 YE3562 YE3562 3877682 3878191 + putative membrane protein Weakly similar to Escherichia coli cytochrome b561 CybB SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 0.00025%2C 26.16 38d in 172 aa%2C and to Yersinia pestis putative membrane protein YPO2316 SWALL:Q8ZE67 (EMBL:AJ414152) (184 aa) fasta scores: E(): 1.5e-08%2C28.49 38d in 179 aa gene gene3516 http://www.ncbi.nlm.nih.gov/gene/?term=YE3562 YE3563 YE3563 YE3563 3878242 3878727 + hypothetical protein N-terminal region is similar to Yersinia pestis hypothetical protein YPO0818 SWALL:Q8ZHR7 (EMBL:AJ414144) (138 aa) fasta scores: E(): 1.1e-13%2C 45.45 38d in 99 aa%2Cand to Salmonella typhi putative membrane protein STY0035 SWALL:Q8Z9P4 (EMBL:AL627265) (149 aa) fasta scores: E(): 0.021%2C 26.01 38d in 123 aa gene gene3517 http://www.ncbi.nlm.nih.gov/gene/?term=YE3563 YE3564 YE3564 yst1C yst1C 3878724 3879266 + general secretion pathway protein C Weakly similar to the C-terminal regions of Aeromonas salmonicida general secretion pathway protein C ExeC SWALL:GSPC_AERSA (SWALL:P45772) (290 aa) fasta scores: E(): 0.00021%2C 29.18 38d in 185 aa and Escherichia coli EtpC protein SWALL:O32565 (EMBL:Y09824) (291 aa) fasta scores: E(): 2.1e-05%2C 32.27 38d in 158 aa gene gene3518 http://www.ncbi.nlm.nih.gov/gene/?term=YE3564 YE3565 YE3565 YE3565 3879335 3881311 + general secretion pathway protein D Similar to Erwinia carotovora general secretion pathway protein D precursor outD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 5.8e-49%2C 54.19 id in 644 aa%2C and to Yersinia pestis general secretion pathway protein D YPO0816 SWALL:Q8ZHR9 (EMBL:AJ414144) (640 aa) fasta scores: E(): 1.8e-105%2C 48.97 38d in 633 aa. CDS is extended at the N-terminus in comparison to some orthologues. Similar to YE3349%2C 50.850 38dentity (51.811 ungapped) in 647 aa overlap gene gene3519 http://www.ncbi.nlm.nih.gov/gene/?term=YE3565 YE3566 YE3566 yst1E yst1E 3881308 3882804 + general secretion pathway protein E Similar to Erwinia carotovora general secretion pathway protein E OutE SWALL:GSPE_ERWCA (SWALL:P31703) (498 aa) fasta scores: E(): 8e-102%2C 62.02 38d in 495 aa%2Cand to Aeromonas hydrophila general secretion pathway protein E ExeE SWALL:GSPE_AERHY (SWALL:P31741) (501 aa) fasta scores: E(): 6.5e-105%2C 63.87 38d in 490 aa. Similar to YE3348%2C 56.996 38dentity (57.9500ngapped) in 486 aa overlap gene gene3520 http://www.ncbi.nlm.nih.gov/gene/?term=YE3566 YE3567 YE3567 yst1F yst1F 3882801 3884018 + general secretion pathway protein F Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 5.6e-84%2C 60.75 38d in 400 aa%2Cand to Aeromonas hydrophila general secretion pathway protein F ExeF SWALL:GSPF_AERHY (SWALL:P31743) (388 aa) fasta scores: E(): 4.9e-72%2C 54.18 38d in 382 aa gene gene3521 http://www.ncbi.nlm.nih.gov/gene/?term=YE3567 YE3568 YE3568 yst1G yst1G 3884050 3884517 + general secretion pathway protein G precursor Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 6e-37%2C 73.13 id in 134 aa%2C and to Aeromonas hydrophila general secretion pathway protein G precursor ExeG SWALL:GSPG_AERHY (SWALL:P31733) (143 aa) fasta scores: E(): 2.2e-38%2C 73.18 38d in 138 aa. Similar to YE3346%2C60.976 38dentity (60.9760ngapped) in 123 aa overlap gene gene3522 http://www.ncbi.nlm.nih.gov/gene/?term=YE3568 YE3569 YE3569 yst1H yst1H 3884517 3885086 + general secretion pathway protein H gene gene3523 http://www.ncbi.nlm.nih.gov/gene/?term=YE3569 YE3570 YE3570 yst1I yst1I 3885092 3885454 + general secretion pathway protein I precursor Similar to Erwinia carotovora general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCA (SWALL:P31588) (121 aa) fasta scores: E(): 6.3e-22%2C 50.86 id in 116 aa%2C and to Aeromonas hydrophila general secretion pathway protein I precursor ExeI SWALL:GSPI_AERHY (SWALL:P31737) (119 aa) fasta scores: E(): 2.6e-21%2C 50.86 38d in 116 aa gene gene3524 http://www.ncbi.nlm.nih.gov/gene/?term=YE3570 YE3570a YE3570a yst1J yst1J 3885451 3886050 + putative general secretion pathway protein J precursor Similar to Erwinia carotovora general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 2.7e-25%2C 37.81 id in 201 aa%2C and to Aeromonas hydrophila general secretion pathway protein J precursor ExeJ SWALL:GSPJ_AERHY (SWALL:P31739) (207 aa) fasta scores: E(): 7.7e-24%2C 37.31 38d in 201 aa. The CDS appears to be truncated at the N-terminus in comparison to the E. carotovora protein%2C but is a similar length to other orthologues gene gene3525 http://www.ncbi.nlm.nih.gov/gene/?term=YE3570a YE3571 YE3571 yst1K yst1K 3886040 3887077 + putative general secretion pathway protein K Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 2.6e-17%2C 33.13 38d in 341 aa%2Cand to Aeromonas hydrophila general secretion pathway protein K ExeK SWALL:GSPK_AERHY (SWALL:P31760) (331 aa) fasta scores: E(): 9.8e-15%2C 31.01 38d in 345 aa gene gene3526 http://www.ncbi.nlm.nih.gov/gene/?term=YE3571 YE3572 YE3572 yst1L yst1L 3887079 3888278 + putative general secretion pathway protein L Similar to Aeromonas hydrophila general secretion pathway protein L ExeL SWALL:GSPL_AERHY (SWALL:P45789) (389 aa) fasta scores: E(): 8.8e-27%2C 31.4 38d in 363 aa%2Cand to Erwinia carotovora general secretion pathway protein L OutL SWALL:GSPL_ERWCA (SWALL:P31708) (425 aa) fasta scores: E(): 2.4e-12%2C 25.7 38d in 393 aa gene gene3527 http://www.ncbi.nlm.nih.gov/gene/?term=YE3572 YE3573 YE3573 yst1M yst1M 3888265 3888759 + putative general secretion pathway protein M Similar to Erwinia carotovora general secretion pathway protein M OutM SWALL:GSPM_ERWCA (SWALL:P31709) (164 aa) fasta scores: E(): 2.5e-05%2C 26.54 38d in 162 aa%2Cand to Klebsiella pneumoniae general secretion pathway protein M PulM SWALL:GSPM_KLEPN (SWALL:P15752) (161 aa) fasta scores: E(): 2.9e-06%2C 26.62 38d in 154 aa gene gene3528 http://www.ncbi.nlm.nih.gov/gene/?term=YE3573 YE3574 YE3574 yst1O yst1O 3888768 3889553 + type 4 prepilin-like proteins leader peptide processing enzyme Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCA (SWALL:P31712) (279 aa) fasta scores: E(): 9.2e-41%2C 54.86 38d in 257 aa%2C and to Aeromonas salmonicida type 4 prepilin-like proteins leader peptide processing enzyme [includes: leader peptidase%3B N-methyltransferase] TapD or PilD SWALL:LEP4_AERSA (SWALL:O68964) (291 aa) fasta scores: E(): 6.6e-48%2C 53.78 id in 264 aa gene gene3529 http://www.ncbi.nlm.nih.gov/gene/?term=YE3574 YE3575 YE3575 yst1S yst1S 3889575 3889976 - putative secretion protein Similar to Erwinia chrysanthemi OutS protein precursor SWALL:OUTS_ERWCH (SWALL:Q01567) (133 aa) fasta scores: E(): 2.7e-07%2C 34.16 38d in 120 aa%2C and to Klebsiella pneumoniae pullulanase secretion protein PulS SWALL:PULS_KLEPN (SWALL:P20440) (125 aa) fasta scores: E(): 1e-07%2C 31.09 38d in 119 aa gene gene3530 http://www.ncbi.nlm.nih.gov/gene/?term=YE3575 YE3576 YE3576 ChiY ChiY 3890393 3891877 + putative chitin binding protein Similar to Vibrio cholerae putative chitinase VCA0811 SWALL:Q9KLD5 (EMBL:AE004409) (485 aa) fasta scores: E(): 6.4e-53%2C 36.94 38d in 498 aa. N-terminus is similar to the N-terminal region of Serratia marcescens chitinase precursor SWALL:Q59930 (EMBL:L38484) (227 aa) fasta scores: E(): 6.4e-14%2C 34.87 38d in 195 aa gene gene3531 http://www.ncbi.nlm.nih.gov/gene/?term=YE3576 YE3577 YE3577 YE3577 3892116 3893495 + putative exported protein Similar to the C-terminal region of Streptomyces coelicolor putative integral membrane protein SCO0987 or SCBAC19F3.14 SWALL:Q93J57 (EMBL:AL596102) (517 aa) fasta scores: E(): 3.4e-53%2C 38.71 38d in 465 aa. Full length CDS is weakly similar to Bacillus halodurans hypothetical protein BH1854 SWALL:Q9KBS1 (EMBL:AP001513) (445 aa) fasta scores: E(): 3.8e-14%2C 25.49 38d in 451 aa gene gene3532 http://www.ncbi.nlm.nih.gov/gene/?term=YE3577 YE3578 YE3578 YE3578 3893711 3894415 + response regulator protein Two-component regulatory system family%2C response regulator protein. C-terminal region is similar to Escherichia coli%2C and Escherichia coli O157:H7 fimbriae Z protein FimZ SWALL:FIMZ_ECOLI (SWALL:P21502) (210 aa) fasta scores: E(): 2.9e-10%2C 31.69 38d in 183 aa. Full length CDS is similar to Yersinia enterocolitica LuxR/UhpA family transcriptional regulator YsrR SWALL:Q9KKI8 (EMBL:AF005744) (236 aa) fasta scores: E(): 1.5e-72%2C80.93 38d in 236 aa. Similar to YE3560%2C 81.356 0dentity (82.05138ngapped) in 236 aa overlap gene gene3533 http://www.ncbi.nlm.nih.gov/gene/?term=YE3578 YE3579 YE3579 YE3579 3894393 3896750 + sensor kinase protein Two-component regulatory system family%2C sensor kinase protein. Similar to Yersinia enterocolitica putative sensory transduction histidine kinase YsrS SWALL:Q9KKI7 (EMBL:AF005744) (791 aa) fasta scores: E(): 0%2C 87 38d in 785 aa. Similar to YE3561%2C 87.134 0dentity (87.35638ngapped) in 785 aa overlap gene gene3534 http://www.ncbi.nlm.nih.gov/gene/?term=YE3579 YE3580 YE3580 YE3580 3897044 3897183 - putative IS285-like transposase (partial) Probable gene remnant. Similar to the N-terminal region of Yersinia pestis transposase SWALL:O68779 (EMBL:AF053947) (402 aa) fasta scores: E(): 6.5e-13%2C91.48 38d in 47 aa%2C and to the full length Yersinia pestis hypothetical protein SWALL:O68700 (EMBL:AF053946) (55 aa) fasta scores: E(): 5e-14%2C 88 38d in 50 aa. Contains a frameshift after codon 3 pseudogene gene3535 http://www.ncbi.nlm.nih.gov/gene/?term=YE3580 YE3581 YE3581 YE3581 3897562 3897828 + conserved hypothetical protein gene gene3536 http://www.ncbi.nlm.nih.gov/gene/?term=YE3581 YE3582 YE3582 map map 3897825 3898610 + methionine aminopeptidase gene gene3537 http://www.ncbi.nlm.nih.gov/gene/?term=YE3582 YE3583 YE3583 YE3583 3898753 3899511 - putative iron ABC transporter%2C ATP-binding protein gene gene3538 http://www.ncbi.nlm.nih.gov/gene/?term=YE3583 YE3584 YE3584 YE3584 3899508 3900515 - putative iron transport permease gene gene3539 http://www.ncbi.nlm.nih.gov/gene/?term=YE3584 YE3585 YE3585 YE3585 3900505 3901464 - putative iron transport permease gene gene3540 http://www.ncbi.nlm.nih.gov/gene/?term=YE3585 YE3586 YE3586 YE3586 3901474 3902427 - putative iron transport protein gene gene3541 http://www.ncbi.nlm.nih.gov/gene/?term=YE3586 YE3587 YE3587 YE3587 3902746 3903213 - putative O-methyltransferase Possible pseudogene. Similar to internal regions of Streptomyces lipmanii O-demethylpuromycin-o-methyltransferase DmpM SWALL:DMPM_STRLP (SWALL:P42712) (376 aa) fasta scores: E(): 4.4e-11%2C 37.25 38d in 153 aa%2C and Streptomyces avermitilis O-methyltransferase SWALL:Q93HA8 (EMBL:AB070947) (359 aa) fasta scores: E(): 5.4e-08%2C31.78 38d in 151 aa. Similar to an internal region of YE1418%2C 62.252 38dentity (62.2520ngapped) in 151 aa overlap gene gene3542 http://www.ncbi.nlm.nih.gov/gene/?term=YE3587 YE3588 YE3588 YE3588 3903486 3904889 + putative transporter protein Similar to the N-terminal region of Escherichia coli%2C and Escherichia coli O157:H7 proline/betaine transporter ProP SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 8e-45%2C 34.72 38d in 432 aa%2C and to the full length Campylobacter jejuni putative transmembrane transport protein CJ0339 SWALL:Q9PIG1 (EMBL:AL139074) (453 aa) fasta scores: E(): 5.8e-128%2C 72.38 38d in 449 aa gene gene3543 http://www.ncbi.nlm.nih.gov/gene/?term=YE3588 YE3589 YE3589 YE3589 3905083 3906102 + LacI family regulatory protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 ribose operon repressor RbsR SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 8.6e-31%2C 35.35 id in 314 aa%2C and to Streptomyces coelicolor hypothetical transcriptional regulator SCO4158 or SCD84.25c SWALL:Y5F8_STRCO (SWALL:Q05954) (340 aa) fasta scores: E(): 1e-34%2C 37.24 38d in 341 aa gene gene3544 http://www.ncbi.nlm.nih.gov/gene/?term=YE3589 YE3590 YE3590 YE3590 3906127 3907197 + putative hydrolase Similar to Crithidia fasciculata inosine-uridine preferring nucleoside hydrolase IunH SWALL:IUNH_CRIFA (SWALL:Q27546) (314 aa) fasta scores: E(): 7.7e-18%2C 31.02 id in 332 aa%2C and to Campylobacter jejuni putative nucleoside hydrolase CJ0340 SWALL:Q9PIG0 (EMBL:AL139074) (335 aa) fasta scores: E(): 1.4e-49%2C 45.2 38d in 323 aa. CDS is extended at the C-terminus in comparison to orthologues gene gene3545 http://www.ncbi.nlm.nih.gov/gene/?term=YE3590 YE3591 YE3591 YE3591 3907361 3908980 + putative Na+/Pi-cotransporter Similar to Escherichia coli hypothetical protein YjbB or b4020 SWALL:YJBB_ECOLI (SWALL:P32683) (543 aa) fasta scores: E(): 6e-124%2C 64.55 38d in 536 aa%2C and to Salmonella typhi putative membrane protein STY4406 SWALL:Q8Z1V5 (EMBL:AL627282) (543 aa) fasta scores: E(): 1.6e-122%2C 65.22 38d in 532 aa gene gene3546 http://www.ncbi.nlm.nih.gov/gene/?term=YE3591 YE3592 YE3592 YE3592 3909060 3909587 - isochorismatase family protein Similar to Streptococcus pneumoniae isochorismatase family protein SP1745 SWALL:Q97P96 (EMBL:AE007467) (166 aa) fasta scores: E(): 1.7e-11%2C 33.33 38d in 150 aa%2C and to Clostridium acetobutylicum amidase from nicotinamidase family CAC3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 2.4e-09%2C 26.92 38d in 156 aa gene gene3547 http://www.ncbi.nlm.nih.gov/gene/?term=YE3592 YE3593 YE3593 YE3593 3909765 3910331 - putative exported protein Similar to Yersinia pestis putative exported protein YPO1003 SWALL:Q8ZHA2 (EMBL:AJ414145) (195 aa) fasta scores: E(): 2.6e-49%2C 71.79 38d in 195 aa%2C and to Salmonella typhi putative exported protein STY4152 SWALL:Q8Z2B0 (EMBL:AL627281) (179 aa) fasta scores: E(): 5.1e-40%2C 63.12 38d in 160 aa gene gene3548 http://www.ncbi.nlm.nih.gov/gene/?term=YE3593 YE3594 YE3594 proP proP 3910509 3912011 - proline/betaine transporter Similar to Escherichia coli%2C and Escherichia coli O157:H7 proline/betaine transporter ProP SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 2.6e-155%2C79.51 38d in 498 aa%2C and to Salmonella typhimurium proline/betaine transporter STM4290 SWALL:PROP_SALTY (SWALL:P40862) (500 aa) fasta scores: E(): 6.7e-156%2C80.12 38d in 498 aa gene gene3549 http://www.ncbi.nlm.nih.gov/gene/?term=YE3594 YE3595 YE3595 YE3595 3912249 3915374 - putative integral membrane efflux protein gene gene3550 http://www.ncbi.nlm.nih.gov/gene/?term=YE3595 YE3596 YE3596 YE3596 3915387 3916589 - putative drug efflux protein gene gene3551 http://www.ncbi.nlm.nih.gov/gene/?term=YE3596 YE3597 YE3597 YE3597 3917096 3919594 + putative membrane protein gene gene3552 http://www.ncbi.nlm.nih.gov/gene/?term=YE3597 YE3598 YE3598 YE3598 3919673 3920344 - putative exported protein Similar to Salmonella typhimurium putative outer membrane lipoprotein STM1607 SWALL:Q8ZPC4 (EMBL:AE008770) (222 aa) fasta scores: E(): 3.1e-32%2C 43.19 38d in 213 aa%2Cand to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical lipoprotein YdcL SWALL:YDCL_ECOLI (SWALL:P76101) (222 aa) fasta scores: E(): 2.4e-31%2C 42.45 id in 212 aa gene gene3553 http://www.ncbi.nlm.nih.gov/gene/?term=YE3598 YE3599 YE3599 thiM thiM 3920539 3921321 - hydroxyethylthiazole kinase Similar to Bacillus subtilis hydroxyethylthiazole kinase ThiM or ThiK SWALL:THIM_BACSU (SWALL:P39593) (272 aa) fasta scores: E(): 3.7e-29%2C 41.83 38d in 251 aa%2C and to Salmonella typhimurium hydroxyethylthiazole kinase ThiM or STM2147 SWALL:THIM_SALTY (SWALL:P55883) (265 aa) fasta scores: E(): 2.8e-55%2C 59.84 38d in 254 aa gene gene3554 http://www.ncbi.nlm.nih.gov/gene/?term=YE3599 YE3600 YE3600 hypF hypF 3921409 3923685 - hydrogenase maturation protein Similar to Escherichia coli hydrogenase maturation protein HypF or HydA SWALL:HYPF_ECOLI (SWALL:P30131) (750 aa) fasta scores: E(): 1.1e-114%2C 62.54 38d in 761 aa%2C and to Salmonella typhi hydrogenase maturation protein STY2964 SWALL:Q8Z4C3 (EMBL:AL627276) (746 aa) fasta scores: E(): 7.6e-116%2C 62.64 38d in 755 aa gene gene3555 http://www.ncbi.nlm.nih.gov/gene/?term=YE3600 YE3601 YE3601 hypE hypE 3923972 3924940 - hydrogenase isoenzymes formation protein Similar to Escherichia coli hydrogenase isoenzymes formation protein HypE SWALL:HYPE_ECOLI (SWALL:P24193) (322 aa) fasta scores: E(): 4.5e-90%2C 72.98 38d in 322 aa%2Cand to Salmonella typhi hydrogenase isoenzymes formation protein STY2980 SWALL:Q8Z4B3 (EMBL:AL627276) (322 aa) fasta scores: E(): 2.2e-90%2C 73.29 38d in 322 aa gene gene3556 http://www.ncbi.nlm.nih.gov/gene/?term=YE3601 YE3602 YE3602 hypD hypD 3925089 3926192 - hydrogenase isoenzymes formation protein Similar to Escherichia coli hydrogenase isoenzymes formation protein HypD SWALL:HYPD_ECOLI (SWALL:P24192) (373 aa) fasta scores: E(): 1.9e-106%2C 68.66 38d in 367 aa%2Cand to Salmonella typhi hydrogenase isoenzymes formation protein STY2979 SWALL:Q8Z4B4 (EMBL:AL627276) (373 aa) fasta scores: E(): 1.4e-106%2C 69.18 38d in 370 aa gene gene3557 http://www.ncbi.nlm.nih.gov/gene/?term=YE3602 YE3602A YE3602A hybG hybG 3926179 3926463 - hydrogenase-2 operon protein gene gene3558 http://www.ncbi.nlm.nih.gov/gene/?term=YE3602A YE3603 YE3603 hypB hypB 3926454 3927554 - hydrogenase isoenzymes nickel incorporation protein C-terminal region is similar to Escherichia coli hydrogenase isoenzymes nickel incorporation protein HypB SWALL:HYPB_ECOLI (SWALL:P24190) (290 aa) fasta scores: E(): 4.4e-63%2C 65.6 38d in 282 aa%2C Full length CDS is similar to Azotobacter chroococcum Mcd 1 hydrogenase nickel incorporation protein HypB or HupB SWALL:HYPB_AZOCH (SWALL:Q43949) (305 aa) fasta scores: E(): 5.5e-54%2C 51.36 id in 366 aa. CDS contain an internal region with additional amino acids relative to orthologues%2C residues 19 to 130. Contained within this region is a histidine rich domain%2C residues 20 to 52. Effect on the function of CDS is not known. Possible pseudogene gene gene3559 http://www.ncbi.nlm.nih.gov/gene/?term=YE3603 YE3603a YE3603a hybF hybF 3927575 3927916 - hydrogenase expression/formation protein Similar to Escherichia coli probable hydrogenase nickel incorporation protein HybF SWALL:HYBF_ECOLI (SWALL:P37184) (113 aa) fasta scores: E(): 4e-26%2C 57.52 id in 113 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative hydrogenase expression/formation protein STM3144 or STY3315 SWALL:Q8XEP6 (EMBL:AE008844) (113 aa) fasta scores: E(): 4.5e-28%2C 59.29 38d in 113 aa gene gene3560 http://www.ncbi.nlm.nih.gov/gene/?term=YE3603a YE3604 YE3604 hybE hybE 3927909 3928427 - hydrogenase-2 operon protein Similar to Escherichia coli hydrogenase-2 operon protein HybE SWALL:HYBE_ECOLI (SWALL:P37183) (162 aa) fasta scores: E(): 3.2e-22%2C 43.03 38d in 165 aa%2C and to Salmonella typhimurium putative hydrogenase STM3145 SWALL:Q8ZM18 (EMBL:AE008844) (162 aa) fasta scores: E(): 4.8e-24%2C 44.84 38d in 165 aa gene gene3561 http://www.ncbi.nlm.nih.gov/gene/?term=YE3604 YE3605 YE3605 hybD hybD 3928420 3928911 - hydrogenase 2 maturation protease Similar to Escherichia coli hydrogenase 2 maturation protease HybD SWALL:HYBD_ECOLI (SWALL:P37182) (164 aa) fasta scores: E(): 1.6e-38%2C 63.8 38d in 163 aa%2Cand to Salmonella typhimurium putative processing element for hydrogenase-2 STM3146 SWALL:Q8ZM17 (EMBL:AE008844) (164 aa) fasta scores: E(): 8.6e-39%2C 63.41 38d in 164 aa gene gene3562 http://www.ncbi.nlm.nih.gov/gene/?term=YE3605 YE3606 YE3606 hybC hybC 3928911 3930605 - hydrogenase-2 large chain precursor Similar to Escherichia coli%2C and Escherichia coli O157:H7 hydrogenase-2 large chain precursor HybC SWALL:MBHM_ECOLI (SWALL:P37181) (566 aa) fasta scores: E(): 2.7e-178%2C 74.91 38d in 566 aa%2C and to Salmonella typhimurium hydrogenase-2%2C large subunit STM3147 SWALL:Q8ZM16 (EMBL:AE008844) (567 aa) fasta scores: E(): 4.1e-179%2C 74.6 38d in 567 aa gene gene3563 http://www.ncbi.nlm.nih.gov/gene/?term=YE3606 YE3607 YE3607 hybB hybB 3930583 3931776 - Ni/Fe-hydrogenase 2 b-type cytochrome subunit Similar to Escherichia coli probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit HybB SWALL:HYBB_ECOLI (SWALL:P37180) (392 aa) fasta scores: E(): 2.6e-120%2C 73.79 38d in 393 aa%2C and to Salmonella typhimurium putative cytochrome Ni/Fe component of hydrogenase-2 STM3148 SWALL:Q8ZM15 (EMBL:AE008844) (392 aa) fasta scores: E(): 2e-120%2C 73.53 38d in 393 aa gene gene3564 http://www.ncbi.nlm.nih.gov/gene/?term=YE3607 YE3608 YE3608 hybA hybA 3931769 3932797 - hydrogenase-2 operon protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 hydrogenase-2 operon protein HybA SWALL:HYBA_ECOLI (SWALL:P37179) (328 aa) fasta scores: E(): 9.8e-100%2C72.05 38d in 340 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi hypothetical protein STM3149 or STY3320 SWALL:Q8XH15 (EMBL:AE008844) (328 aa) fasta scores: E(): 9.8e-100%2C 72.05 38d in 340 aa. In E. coli intitally thought to be hydrogenase-2 small subunit which now is identified as HybO gene gene3565 http://www.ncbi.nlm.nih.gov/gene/?term=YE3608 YE3609 YE3609 hyb0 hyb0 3932800 3933915 - hydrogenase-2 small chain precursor Similar to Escherichia coli%2C and Escherichia coli O157:H7 hydrogenase-2 small chain precursor Hyb0 SWALL:MBHT_ECOLI (SWALL:Q46847) (372 aa) fasta scores: E(): 6.9e-123%2C 80.59 38d in 371 aa%2C and to Salmonella typhimurium%2C and Salmonella typhi putative Ni/Fe hydrogenases%2C small subunit STM3150 or hyb0 or STY3321 SWALL:Q8XGL3 (EMBL:AE008844) (372 aa) fasta scores: E(): 1.1e-122%2C 80.86 38d in 371 aa gene gene3566 http://www.ncbi.nlm.nih.gov/gene/?term=YE3609 YE3610 YE3610 pcpY2 pcpY2 3934620 3935087 + outer membrane lipoprotein Similar to Yersinia enterocolitica outer membrane lipoprotein precursor Pcp or PcpY SWALL:PCP_YEREN (SWALL:P31484) (155 aa) fasta scores: E(): 1.9e-34%2C 72.9 id in 155 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 outer membrane lipoprotein precursor SlyB SWALL:SLYB_ECOLI (SWALL:P55741) (155 aa) fasta scores: E(): 1.1e-30%2C 63.22 38d in 155 aa. Similar to YE2143%2C72.903 38dentity (72.9030ngapped) in 155 aa overlap%2C and to YE3819%2C 66.667 38dentity (67.0970ngapped) in 156 aa overlap gene gene3567 http://www.ncbi.nlm.nih.gov/gene/?term=YE3610 YE3610A YE3610A YE3610A 3935004 3935195 - putative flagellar biogenesis protein (pseudogene) Similar to Yersinia pestis putative flagellar biogenesis protein ypo0744 SWALL:Q8ZHY0 (EMBL:AJ414144) (156 aa) fasta scores: E(): 8.1e-12%2C 37.24 38d in 145 aa. Note carries and inframe stop codon following codon 23 and 77. The CDS also appears to be truncated at the C-termini. pseudogene gene3568 http://www.ncbi.nlm.nih.gov/gene/?term=YE3610A YE3611 YE3611 YE3611 3935715 3936476 + putative flagella operon transcriptional activator (partial) N-terminus is similar to the N-terminal region of Vibrio cholerae cholera toxin transcriptional activator ToxR SWALL:TOXR_VIBCH (SWALL:P15795) (294 aa) fasta scores: E(): 0.00015%2C 26.27 38d in 236 aa%2C and to Yersinia pestis putative regulatory protein YPO0736 SWALL:Q8ZHY8 (EMBL:AJ414144) (348 aa) fasta scores: E(): 8.9e-31%2C44.48 38d in 263 aa. CDS is probably truncated by the insertion of the downstream IS element and subsequent recombination events pseudogene gene3569 http://www.ncbi.nlm.nih.gov/gene/?term=YE3611 YE3612 YE3612 tpn1330 tpn1330 3936522 3936891 - transposase for IS1330 (pseudogene) This is a highly degenerate copy of the previously sequenced: Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 2.9e-20%2C 51.37 38d in 399 aa pseudogene gene3570 http://www.ncbi.nlm.nih.gov/gene/?term=YE3612 YE3614 YE3614 YE3614 3937695 3938543 - putative lipase/acylhydrolase C-terminal region is similar to the N-terminal region of Aeromonas hydrophila phosphatidylcholine-sterol acyltransferase precursor SWALL:GCAT_AERHY (SWALL:P10480) (335 aa) fasta scores: E(): 1.6e-15%2C 30.73 38d in 231 aa%2Cand an internal region of Salmonella typhimurium salmonella translocated effector: regulated by SPI-2 STM1631 SWALL:Q9FD10 (EMBL:AE008772) (408 aa) fasta scores: E(): 8.7e-29%2C 42.56 38d in 242 aa gene gene3571 http://www.ncbi.nlm.nih.gov/gene/?term=YE3614 YE3615 YE3615 YE3615 3939448 3941022 - putative methyl-accepting chemotaxis protein Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 8.2e-65%2C 47.4 id in 521 aa%2C and to Salmonella typhimurium putative methyl-accepting chemotaxis protein STM3152 SWALL:Q8ZM14 (EMBL:AE008845) (547 aa) fasta scores: E(): 1.7e-82%2C50.86 38d in 519 aa. Similar to YE2971%2C 60.421 0dentity (60.53638ngapped) in 523 aa overlap gene gene3572 http://www.ncbi.nlm.nih.gov/gene/?term=YE3615 YE3616 YE3616 YE3616 3941617 3942600 - conserved hypothetical protein gene gene3573 http://www.ncbi.nlm.nih.gov/gene/?term=YE3616 YE3617 YE3617 YE3617 3942627 3943937 - putative membrane transport protein gene gene3574 http://www.ncbi.nlm.nih.gov/gene/?term=YE3617 YE3618 YE3618 fepB fepB 3944627 3945478 + Ferrienterobactin-periplasmic binding protein gene gene3575 http://www.ncbi.nlm.nih.gov/gene/?term=YE3618 YE3619 YE3619 fepD fepD 3945828 3946898 + ferric enterobactin transport system permease protein Similar to Escherichia coli ferric enterobactin transport system permease protein FepD SWALL:FEPD_ECOLI (SWALL:P23876) (334 aa) fasta scores: E(): 1.3e-63%2C 55.23 id in 315 aa. Highly similar to Yersinia enterocolitica putative permease FepD SWALL:Q9X3S1 (EMBL:AF082879) (355 aa) fasta scores: E(): 1.3e-124%2C 99.43 38d in 354 aa gene gene3576 http://www.ncbi.nlm.nih.gov/gene/?term=YE3619 YE3620 YE3620 fepG fepG 3946895 3947938 + iron-siderophore transport system%2C membrane permease component gene gene3577 http://www.ncbi.nlm.nih.gov/gene/?term=YE3620 YE3621 YE3621 fepC fepC 3947905 3948753 + iron-siderophore transport system%2C ATP-binding component gene gene3578 http://www.ncbi.nlm.nih.gov/gene/?term=YE3621 YE3622 YE3622 fes fes 3948823 3950199 - enterochelin esterase Similar to Erwinia chrysanthemi enterochelin esterase Fes SWALL:FES_ERWCH (SWALL:O51900) (434 aa) fasta scores: E(): 6.8e-75%2C 47.6 38d in 418 aa. Highly similar to Yersinia enterocolitica enterochelin esterase Fes SWALL:FES_YEREN (SWALL:Q56855) (353 aa) fasta scores: E(): 4.3e-128%2C 95.41 38d in 327 aa. This CDS differs from that previously sequenced in the very C-terminal region. Possible alternative translational start site at codon 8 gene gene3579 http://www.ncbi.nlm.nih.gov/gene/?term=YE3622 YE3623 YE3623 YE3623 3950296 3950379 + hypothetical protein Doubtful CDS. Similar to the C-terminal region of Yersinia pestis hypothetical protein YPO0478 ypo0478 SWALL:Q8ZIL7 (EMBL:AJ414143) (54 aa) fasta scores: E(): 1.9e-07%2C 80.76 38d in 26 aa. Similar YE1774%2C 85.185 identity (85.18538ngapped) in 27 aa overlap%2C YE1164%2C85.185 38dentity (85.1850ngapped) in 27 aa overlap%2CYE4017%2C 81.481 38dentity (81.4810ngapped) in 27 aa overlap%2C YE0137%2C 81.481 38dentity (81.4810ngapped) in 27 aa overlap%2C YE0627%2C 77.778 38dentity%2C and to YE0496%2C74.074 38dentity (74.0740ngapped) in 27 aa overlap gene gene3580 http://www.ncbi.nlm.nih.gov/gene/?term=YE3623 YE3624 YE3624 fepA fepA 3950648 3952799 + ferric enterochelin receptor (pseudogene) Similar to Erwinia chrysanthemi ferrichrysobactin receptor precursor Fct SWALL:FCT_ERWCH (SWALL:Q47162) (735 aa) fasta scores: E(): 6.2e-78%2C 51.97 38d in 708 aa%2C and to Salmonella typhimurium ferrioxamine B receptor precursor FoxA SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 1.4e-80%2C 35.39 38d in 695 aa. Contains a frameshift after codon 404 pseudogene gene3581 http://www.ncbi.nlm.nih.gov/gene/?term=YE3624 YE3626 YE3626 YE3626 3953098 3953511 + putative exported protein Poor database matches. Weakly similar to Ralstonia solanacearum hypothetical transmembrane protein RSP0925 or RS05408 SWALL:Q8XRD3 (EMBL:AL646081) (136 aa) fasta scores: E(): 8.3%2C 28.05 38d in 139 aa gene gene3582 http://www.ncbi.nlm.nih.gov/gene/?term=YE3626 YE3627 YE3627 YE3627 3953586 3953975 + putative exported protein Weakly similar to Caulobacter crescentus hypothetical protein CC2017 SWALL:Q9A6R6 (EMBL:AE005875) (130 aa) fasta scores: E(): 0.0009%2C 27.77 38d in 108 aa%2Cand to Escherichia coli hypothetical protein CusX or b0573 SWALL:CUSX_ECOLI (SWALL:P77214) (110 aa) fasta scores: E(): 0.038%2C 28.88 38d in 90 aa gene gene3583 http://www.ncbi.nlm.nih.gov/gene/?term=YE3627 YE3628 YE3628 YE3628 3953989 3955287 + outer membrane efflux protein Similar to Alcaligenes eutrophus nickel and cobalt resistance protein precursor CnrC SWALL:CNRC_ALCEU (SWALL:P37974) (418 aa) fasta scores: E(): 2.6e-05%2C 25.65 id in 421 aa%2C and to Ralstonia solanacearum putative outer membrane cation efflux protein RSP0926 or RS05407 SWALL:Q8XRD2 (EMBL:AL646081) (434 aa) fasta scores: E(): 5.5e-26%2C 28.15 38d in 412 aa gene gene3584 http://www.ncbi.nlm.nih.gov/gene/?term=YE3628 YE3629 YE3629 YE3629 3955284 3956813 + putative efflux system protein N-terminal region is similar to Escherichia coli putative copper efflux system protein CusB SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 1e-48%2C 39.85 38d in 399 aa. Full length CDS is similar to Ralstonia solanacearum putative cation efflux system transmembrane protein RSP0927 or RS05406 SWALL:Q8XRD1 (EMBL:AL646081) (513 aa) fasta scores: E(): 7.4e-62%2C 40.35 38d in 513 aa gene gene3585 http://www.ncbi.nlm.nih.gov/gene/?term=YE3629 YE3630 YE3630 YE3630 3956810 3959941 + putative cation efflux system protein Similar to Escherichia coli putative cation efflux system protein CusA SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 0%2C 64.39 38d in 1042 aa%2C and to Ralstonia solanacearum probable cation efflux system transmembrane protein RSP0928 or RS05405 SWALL:Q8XRD0 (EMBL:AL646081) (1047 aa) fasta scores: E(): 0%2C 68.81 38d in 1039 aa gene gene3586 http://www.ncbi.nlm.nih.gov/gene/?term=YE3630 YE3631 YE3631 alkB alkB 3960008 3960673 - alkylated DNA repair protein Similar to Escherichia coli alkylated DNA repair protein AlkB or AidD SWALL:ALKB_ECOLI (SWALL:P05050) (216 aa) fasta scores: E(): 9.3e-53%2C 61.29 38d in 217 aa%2C and to Salmonella typhimurium alkylated DNA repair protein STM2264 SWALL:ALKB_SALTY (SWALL:P37462) (216 aa) fasta scores: E(): 2e-53%2C 61.29 38d in 217 aa gene gene3587 http://www.ncbi.nlm.nih.gov/gene/?term=YE3631 YE3632 YE3632 YE3632 3961220 3961819 + membrane protein Poor database matches. N-terminus is similar to the N-terminal regions of Yersinia enterocolitica hypothetical protein Orf1 SWALL:Q9KKJ0 (EMBL:AF005744) (161 aa) fasta scores: E(): 1.1e-06%2C 37.14 38d in 105 aa%2C and Salmonella typhimurium putative inner membrane protein STM0341 SWALL:Q8ZRH8 (EMBL:AE008710) (254 aa) fasta scores: E(): 2.2e-05%2C 33.96 38d in 106 aa gene gene3588 http://www.ncbi.nlm.nih.gov/gene/?term=YE3632 YE3633 YE3633 flp flp 3962020 3962214 + pilin protein%2C major subunit Similar to Ralstonia solanacearum putative pilin protein RSP1092 or RS02598 SWALL:Q8XQX6 (EMBL:AL646082) (58 aa) fasta scores: E(): 4.4%2C 33.33 38d in 48 aa%2C and to Pasteurella multocida hypothetical protein PM0855 SWALL:Q9CMH1 (EMBL:AE006124) (74 aa) fasta scores: E(): 4.5%2C 43.9 38d in 41 aa gene gene3589 http://www.ncbi.nlm.nih.gov/gene/?term=YE3633 YE3634 YE3634 tadV tadV 3962286 3962708 + putative tight adherance operon protein gene gene3590 http://www.ncbi.nlm.nih.gov/gene/?term=YE3634 YE3635 YE3635 rcpC rcpC 3962753 3963586 + putative tight adherance operon protein gene gene3591 http://www.ncbi.nlm.nih.gov/gene/?term=YE3635 YE3636 YE3636 rcpA rcpA 3963583 3964944 + putative tight adherance operon protein Similar to Actinobacillus actinomycetemcomitans rough colony protein A rcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 1e-44%2C 39.46 38d in 446 aa%2Cand to Pasteurella multocida putative rough colony protein A PM0852 SWALL:Q9CMH4 (EMBL:AE006123) (470 aa) fasta scores: E(): 4.2e-38%2C 40.73 38d in 437 aa gene gene3592 http://www.ncbi.nlm.nih.gov/gene/?term=YE3636 YE3637 YE3637 tadZ tadZ 3965213 3966331 + conserved hypothetical protein gene gene3593 http://www.ncbi.nlm.nih.gov/gene/?term=YE3637 YE3638 YE3638 tadA tadA 3966363 3967637 + putative tight adherance operon protein gene gene3594 http://www.ncbi.nlm.nih.gov/gene/?term=YE3638 YE3639 YE3639 tadB tadB 3967673 3968515 + putative tight adherance operon protein gene gene3595 http://www.ncbi.nlm.nih.gov/gene/?term=YE3639 YE3640 YE3640 tadC tadC 3968512 3969336 + putative tight adherance operon protein gene gene3596 http://www.ncbi.nlm.nih.gov/gene/?term=YE3640 YE3641 YE3641 tadD tadD 3969323 3970090 + putative tight adherance operon protein gene gene3597 http://www.ncbi.nlm.nih.gov/gene/?term=YE3641 YE3642 YE3642 tadE tadE 3970095 3970559 + putative tight adherance operon protein gene gene3598 http://www.ncbi.nlm.nih.gov/gene/?term=YE3642 YE3643 YE3643 tadF tadF 3970543 3971121 + putative tight adherance operon protein gene gene3599 http://www.ncbi.nlm.nih.gov/gene/?term=YE3643 YE3644 YE3644 tadG tadG 3971157 3972536 + putative tight adherance operon protein gene gene3600 http://www.ncbi.nlm.nih.gov/gene/?term=YE3644 YE3645 YE3645 YE3645 3972581 3973006 - ExbD/TolR-family transport protein gene gene3601 http://www.ncbi.nlm.nih.gov/gene/?term=YE3645 YE3646 YE3646 YE3646 3973010 3973723 - MotA/TolQ/ExbB proton channel family protein gene gene3602 http://www.ncbi.nlm.nih.gov/gene/?term=YE3646 YE3647 YE3647 metC metC 3974502 3975713 + putative cystathionine beta-lyase gene gene3603 http://www.ncbi.nlm.nih.gov/gene/?term=YE3647 YE3648 YE3648 YE3648 3975920 3976582 + putative DedA-family membrane protein gene gene3604 http://www.ncbi.nlm.nih.gov/gene/?term=YE3648 YE3649 YE3649 YE3649 3976641 3977534 - AraC-family regulatory protein gene gene3605 http://www.ncbi.nlm.nih.gov/gene/?term=YE3649 YE3650 YE3650 YE3650 3977977 3980016 + putative exported protein Weakly similar to Enterococcus faecalis V583 cell wall surface anchor family protein SWALL:AAO79968 (EMBL:AE016947) (1055 aa) fasta scores: E(): 4e-10%2C 22.4 id in 616 aa gene gene3606 http://www.ncbi.nlm.nih.gov/gene/?term=YE3650 YE3651 YE3651 YE3651 3980364 3981521 + putative iron-containing alcohol dehydrogenase gene gene3607 http://www.ncbi.nlm.nih.gov/gene/?term=YE3651 YE3652 YE3652 YE3652 3981740 3982573 + putative aldo/keto reductase family protein gene gene3608 http://www.ncbi.nlm.nih.gov/gene/?term=YE3652 YE3653 YE3653 YE3653 3982575 3984878 - conserved hypothetical protein Similar to Salmonella typhimurium putative Fe-S oxidoreductase family 2 STM3168 SWALL:Q8ZM03 (EMBL:AE008845) (723 aa) fasta scores: E(): 0%2C 83.44 38d in 719 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z4370 SWALL:Q8XBS7 (EMBL:AE005531) (739 aa) fasta scores: E(): 0%2C 81.4 38d in 742 aa. CDS is extended at the C-terminus in comparison to orthologues gene gene3609 http://www.ncbi.nlm.nih.gov/gene/?term=YE3653 YE3654 YE3654 sufI sufI 3985062 3986489 - putative cell division protein gene gene3610 http://www.ncbi.nlm.nih.gov/gene/?term=YE3654 YE3655 YE3655 plsC plsC 3986652 3987383 - putative acyltransferase gene gene3611 http://www.ncbi.nlm.nih.gov/gene/?term=YE3655 YE3656 YE3656 parC parC 3987565 3989841 - DNA topoisomerase IV subunit A gene gene3612 http://www.ncbi.nlm.nih.gov/gene/?term=YE3656 YE3657 YE3657 mdaB mdaB 3990153 3990746 + putative modulator of drug activity gene gene3613 http://www.ncbi.nlm.nih.gov/gene/?term=YE3657 YE3658 YE3658 YE3658 3990779 3991084 + conserved hypothetical protein Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein STM3180 or STY3358 SWALL:Q8XFF1 (EMBL:AE008846) (104 aa) fasta scores: E(): 6.2e-19%2C 52.94 38d in 102 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 hypothetical protein YgiN SWALL:YGIN_ECOLI (SWALL:P40718) (104 aa) fasta scores: E(): 1.2e-18%2C 52 38d in 100 aa gene gene3614 http://www.ncbi.nlm.nih.gov/gene/?term=YE3658 YE3659 YE3659 crgA crgA 3991110 3992027 - LysR-family regulatory protein gene gene3615 http://www.ncbi.nlm.nih.gov/gene/?term=YE3659 YE3660 YE3660 parE parE 3992048 3993943 - topoisomerase IV subunit B gene gene3616 http://www.ncbi.nlm.nih.gov/gene/?term=YE3660 YE3661 YE3661 YE3661 3994058 3994642 - conserved hypothetical protein gene gene3617 http://www.ncbi.nlm.nih.gov/gene/?term=YE3661 YE3662 YE3662 icc icc 3994639 3995466 - Icc protein homologue gene gene3618 http://www.ncbi.nlm.nih.gov/gene/?term=YE3662 YE3663 YE3663 YE3663 3995546 3995971 - conserved hypothetical protein gene gene3619 http://www.ncbi.nlm.nih.gov/gene/?term=YE3663 YE3664 YE3664 YE3664 3995983 3996615 - putative MutT-family protein gene gene3620 http://www.ncbi.nlm.nih.gov/gene/?term=YE3664 YE3665 YE3665 hasF hasF 3996933 3998414 + ABC-transporter outer membrane component gene gene3621 http://www.ncbi.nlm.nih.gov/gene/?term=YE3665 YE3666 YE3666 YE3666 3998660 3999349 + putative exported protein gene gene3622 http://www.ncbi.nlm.nih.gov/gene/?term=YE3666 YE3667 YE3667 YE3667 3999360 4000520 + conserved hypothetical protein gene gene3623 http://www.ncbi.nlm.nih.gov/gene/?term=YE3667 YE3668 YE3668 YE3668 4000693 4001475 - conserved hypothetical protein gene gene3624 http://www.ncbi.nlm.nih.gov/gene/?term=YE3668 YE3669 YE3669 ribB ribB 4001890 4002543 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase gene gene3625 http://www.ncbi.nlm.nih.gov/gene/?term=YE3669 YE3670 YE3670 YE3670 4002671 4002820 - hypothetical protein Doubtful CDS. Similar to an internal region of Yersinia pestis hypothetical protein YPO0657 SWALL:Q8ZI57 (EMBL:AJ414144) (83 aa) fasta scores: E(): 4.4e-16%2C 89.13%25 id in 46 aa gene gene3626 http://www.ncbi.nlm.nih.gov/gene/?term=YE3670 YE3671 YE3671 YE3671 4003009 4003308 + conserved hypothetical protein gene gene3627 http://www.ncbi.nlm.nih.gov/gene/?term=YE3671 YE3672 YE3672 asoB asoB 4003352 4004596 - putative permease gene gene3628 http://www.ncbi.nlm.nih.gov/gene/?term=YE3672 YE3673 YE3673 rfaE rfaE 4004749 4006179 - ADP-heptose synthase gene gene3629 http://www.ncbi.nlm.nih.gov/gene/?term=YE3673 YE3674 YE3674 glnE glnE 4006430 4009282 - glutamate-ammonia-ligase adenylyltransferase gene gene3630 http://www.ncbi.nlm.nih.gov/gene/?term=YE3674 YE3675 YE3675 YE3675 4009427 4010752 - conserved hypothetical protein gene gene3631 http://www.ncbi.nlm.nih.gov/gene/?term=YE3675 YE3676 YE3676 YE3676 4011077 4011697 + putative exported protein gene gene3632 http://www.ncbi.nlm.nih.gov/gene/?term=YE3676 YE3677 YE3677 cca cca 4011864 4013108 + tRNA nucleotidyltransferase gene gene3633 http://www.ncbi.nlm.nih.gov/gene/?term=YE3677 YE3678 YE3678 bacA bacA 4013298 4014116 - putative bacitracin resistance protein gene gene3634 http://www.ncbi.nlm.nih.gov/gene/?term=YE3678 YE3679 YE3679 folB folB 4014278 4014637 - putative dihydroneopterin aldolase gene gene3635 http://www.ncbi.nlm.nih.gov/gene/?term=YE3679 YE3680 YE3680 YE3680 4014745 4015398 + putative membrane protein gene gene3636 http://www.ncbi.nlm.nih.gov/gene/?term=YE3680 YE3681 YE3681 gcp gcp 4015553 4016566 - putative glycoprotease gene gene3637 http://www.ncbi.nlm.nih.gov/gene/?term=YE3681 YE3682 YE3682 rpsU rpsU 4016940 4017155 + 30S ribosomal protein S21 gene gene3638 http://www.ncbi.nlm.nih.gov/gene/?term=YE3682 YE3683 YE3683 dnaG dnaG 4017292 4019040 + DNA primase gene gene3639 http://www.ncbi.nlm.nih.gov/gene/?term=YE3683 YE3684 YE3684 rpoD rpoD 4019198 4021036 + RNA polymerase sigma factor RpoD gene gene3640 http://www.ncbi.nlm.nih.gov/gene/?term=YE3684 YE3685 YE3685 YE3685 4021463 4022794 - hypothetical protein Similar to the N-terminal region of Oceanobacillus iheyensis hypothetical conserved protein OB1304 SWALL:BAC13260 (EMBL:AP004597) (509 aa) fasta scores: E(): 1.1e-20%2C 31.22 38d in 442 aa. N-terminus is similar to the N-terminal region of Bacillus halodurans hypothetical protein BH0674 SWALL:Q9KF23 (EMBL:AP001509) (418 aa) fasta scores: E(): 1.6e-19%2C 35.96 38d in 317 aa gene gene3642 http://www.ncbi.nlm.nih.gov/gene/?term=YE3685 YE3686 YE3686 YE3686 4022847 4023932 - hypothetical protein No significant database matches gene gene3643 http://www.ncbi.nlm.nih.gov/gene/?term=YE3686 YE3687 YE3687 YE3687 4023950 4025827 - glycosyl hydrolase family protein Similar to Alteromonas sp. beta-hexosaminidase A precursor Cht60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 3.9e-38%2C 32.65 38d in 594 aa%2C and to Thermoanaerobacter tengcongensis beta-glucosidase-related glycosidases TTE0241 SWALL:Q8RD12 (EMBL:AE012996) (591 aa) fasta scores: E(): 8.3e-52%2C 36.15 38d in 639 aa gene gene3644 http://www.ncbi.nlm.nih.gov/gene/?term=YE3687 YE3688 YE3688 YE3688 4026155 4027015 - RpiR family regulatory protein Similar to Vibrio cholerae hypothetical protein VC0204 SWALL:Q9KVE2 (EMBL:AE004110) (282 aa) fasta scores: E(): 1.7e-38%2C 45.07 38d in 284 aa%2C and to Escherichia coli als operon repressor RpiR or AlsR SWALL:RPIR_ECOLI (SWALL:P39266) (296 aa) fasta scores: E(): 2.8e-14%2C 28.01 id in 257 aa gene gene3645 http://www.ncbi.nlm.nih.gov/gene/?term=YE3688 YE3689 YE3689 YE3689 4027243 4028151 + conserved hypothetical protein Similar to Vibrio cholerae GckR family protein VC0206 SWALL:Q9KVE0 (EMBL:AE004110) (305 aa) fasta scores: E(): 1.4e-70%2C 68.22 38d in 299 aa%2C and to Pasteurella multocida hypothetical protein PM1576 SWALL:YF76_PASMU (SWALL:P57951) (301 aa) fasta scores: E(): 2.6e-66%2C 64.78 id in 301 aa. Similar to YE1027%2C 58.305 38dentity (58.305 ungapped) in 295 aa overlap gene gene3646 http://www.ncbi.nlm.nih.gov/gene/?term=YE3689 YE3690 YE3690 YE3690 4028154 4029605 + photransferase system%2C IIBC component Similar to Escherichia coli PTS system%2Ctrehalose-specific IIBC component TreB SWALL:PTTB_ECOLI (SWALL:P36672) (473 aa) fasta scores: E(): 1.3e-17%2C 24.52 id in 473 aa%2C and to Vibrio cholerae PTS system%2Csucrose-specific IIBC component VC0207 SWALL:PTSB_VIBCH (SWALL:Q9KVD9) (482 aa) fasta scores: E(): 2.8e-123%2C 70.8 id in 483 aa gene gene3647 http://www.ncbi.nlm.nih.gov/gene/?term=YE3690 YE3691 YE3691 YE3691 4029655 4030596 - putative glutaminase Similar to Rhizobium etli thermolabile glutaminase GlsA SWALL:GLSA_RHIET (SWALL:O87405) (309 aa) fasta scores: E(): 1.7e-30%2C 36.03 38d in 308 aa%2C and to Escherichia coli probable glutaminase YbaS SWALL:GLS1_ECOLI (SWALL:P77454) (310 aa) fasta scores: E(): 2.2e-89%2C 76.69 38d in 309 aa gene gene3648 http://www.ncbi.nlm.nih.gov/gene/?term=YE3691 YE3692 YE3692 YE3692 4030666 4032222 - putative amino acid permease Similar to Brucella melitensis glutamate/gamma-aminobutyrate antiporter BMEII0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 5.6e-127%2C 63.45 38d in 498 aa%2C and to Chlamydia muridarum amino acid antiporter TC0488 SWALL:Q9PKH7 (EMBL:AE002317) (466 aa) fasta scores: E(): 1.2e-53%2C 35.03 38d in 471 aa. CDS is extended at the C-terminus in comparison to some orthologues gene gene3649 http://www.ncbi.nlm.nih.gov/gene/?term=YE3692 YE3693 YE3693 gadA gadA 4032296 4033696 - glutamate decarboxylase Similar to Escherichia coli glutamate decarboxylase alpha GadA or GadS SWALL:DCEA_ECOLI (SWALL:P80063) (466 aa) fasta scores: E(): 2.1e-172%2C 82.61 38d in 466 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 glutamate decarboxylase beta GadB SWALL:DCEB_ECOLI (SWALL:P28302) (466 aa) fasta scores: E(): 7e-172%2C 82.18 id in 466 aa gene gene3650 http://www.ncbi.nlm.nih.gov/gene/?term=YE3693 YE3694 YE3694 YE3694 4034021 4034479 - putative transcriptional regulator Similar to Pseudomonas aeruginosa hypothetical protein PA1607 SWALL:Q9I3B4 (EMBL:AE004588) (146 aa) fasta scores: E(): 2.9e-28%2C 53.84 38d in 143 aa. C-terminal region in similar to Rhizobium meliloti hypothetical protein RA1074 or SMA1960 SWALL:Q92Y14 (EMBL:AE007293) (125 aa) fasta scores: E(): 2.2e-20%2C 51.3 38d in 115 aa gene gene3651 http://www.ncbi.nlm.nih.gov/gene/?term=YE3694 YE3695 YE3695 YE3695 4034588 4035826 + putative transporter protein Similar to Yersinia pestis probable sugar transporter YPO3263 SWALL:Q8ZBX1 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.7e-63%2C 45.59 38d in 386 aa%2C and to the C-terminal region of Rhizobium meliloti hypothetical protein RA1073 or SMA1959 SWALL:Q92Y15 (EMBL:AE007293) (469 aa) fasta scores: E(): 7.2e-71%2C 54.02 38d in 385 aa gene gene3652 http://www.ncbi.nlm.nih.gov/gene/?term=YE3695 YE3696 YE3696 YE3696 4035918 4036490 + putative membrane protein gene gene3653 http://www.ncbi.nlm.nih.gov/gene/?term=YE3696 YE3697 YE3697 YE3697 4036643 4037542 + putative membrane protein Similar to Salmonella typhi putative membrane protein STY1543 SWALL:Q8Z701 (EMBL:AL627270) (300 aa) fasta scores: E(): 1.4e-32%2C 37.45 38d in 291 aa. Weakly similar to Erwinia chrysanthemi protein involved in the pectate lyase and cellulase regulation PecM SWALL:PECM_ERWCH (SWALL:P42194) (297 aa) fasta scores: E(): 1.6e-06%2C 23.05 38d in 308 aa gene gene3654 http://www.ncbi.nlm.nih.gov/gene/?term=YE3697 YE3698 YE3698 fadH fadH 4037692 4039713 + 2%2C4-dienoyl-CoA reductase gene gene3655 http://www.ncbi.nlm.nih.gov/gene/?term=YE3698 YE3699 YE3699 YE3699 4039979 4041169 - putative methyltransferase gene gene3656 http://www.ncbi.nlm.nih.gov/gene/?term=YE3699 YE3700 YE3700 YE3700 4041668 4043575 + Hypothetical protein%2C possible beta-barrel outer membrane protein N-terminus has no significant hits in the databases. C-terminus similar to Yersinia pestis YapG putative autotransporter protein or ypo0587 SWALL:Q9F286 (EMBL:AJ277630) (994 aa) fasta scores: E(): 1.5e-41%2C34.01 38d in 441 aa%2C and to Escherichia coli O157:H7 putative beta-barrel outer membrane protein z0402 or ecs0362 SWALL:Q8X6C1 (EMBL:AE005210) (1349 aa) fasta scores: E(): 1.1e-39%2C 35.93 38d in 359 aa gene gene3657 http://www.ncbi.nlm.nih.gov/gene/?term=YE3700 YE3701 YE3701 YE3701 4043817 4044320 + conserved hypothetical protein gene gene3658 http://www.ncbi.nlm.nih.gov/gene/?term=YE3701 YE3702 YE3702 YE3702 4044392 4045393 + putative MocA-family oxidoreductase gene gene3659 http://www.ncbi.nlm.nih.gov/gene/?term=YE3702 YE3703 YE3703 YE3703 4045743 4046729 + putative drug efflux protein gene gene3660 http://www.ncbi.nlm.nih.gov/gene/?term=YE3703 YE3704 YE3704 YE3704 4047047 4048303 + putative symporter protein gene gene3661 http://www.ncbi.nlm.nih.gov/gene/?term=YE3704 YE3705 YE3705 YE3705 4048353 4048889 - putative membrane protein gene gene3662 http://www.ncbi.nlm.nih.gov/gene/?term=YE3705 YE3706 YE3706 uxaA uxaA 4049059 4050549 - altronate hydrolase gene gene3663 http://www.ncbi.nlm.nih.gov/gene/?term=YE3706 YE3707 YE3707 uxaB uxaB 4050560 4052011 - altronate oxidoreductase gene gene3664 http://www.ncbi.nlm.nih.gov/gene/?term=YE3707 YE3708 YE3708 uxaC uxaC 4052133 4053542 - uronate isomerase gene gene3665 http://www.ncbi.nlm.nih.gov/gene/?term=YE3708 YE3709 YE3709 exuT exuT 4054068 4055372 + ExuT transport protein gene gene3666 http://www.ncbi.nlm.nih.gov/gene/?term=YE3709 YE3710 YE3710 exuR exuR 4055612 4056406 + exu regulon transcriptional regulator gene gene3667 http://www.ncbi.nlm.nih.gov/gene/?term=YE3710 YE3711 YE3711 YE3711 4056638 4057153 + putative lipoprotein gene gene3668 http://www.ncbi.nlm.nih.gov/gene/?term=YE3711 YE3712 YE3712 yqjA yqjA 4057347 4058039 + putative DedA-family membrane protein gene gene3669 http://www.ncbi.nlm.nih.gov/gene/?term=YE3712 YE3713 YE3713 YE3713 4058036 4058425 + putative membrane protein gene gene3670 http://www.ncbi.nlm.nih.gov/gene/?term=YE3713 YE3714 YE3714 YE3714 4058665 4058997 + putative exported protein gene gene3671 http://www.ncbi.nlm.nih.gov/gene/?term=YE3714 YE3715 YE3715 yqjD yqjD 4059122 4059427 + putative membrane protein gene gene3672 http://www.ncbi.nlm.nih.gov/gene/?term=YE3715 YE3716 YE3716 YE3716 4059430 4059825 + conserved hypothetical protein gene gene3673 http://www.ncbi.nlm.nih.gov/gene/?term=YE3716 YE3717 YE3717 YE3717 4059822 4060106 + conserved hypothetical protein gene gene3674 http://www.ncbi.nlm.nih.gov/gene/?term=YE3717 YE3718 YE3718 YE3718 4060558 4060926 + putative membrane protein gene gene3675 http://www.ncbi.nlm.nih.gov/gene/?term=YE3718 YE3719 YE3719 YE3719 4061010 4062008 + conserved hypothetical protein gene gene3676 http://www.ncbi.nlm.nih.gov/gene/?term=YE3719 YE3720 YE3720 YE3720 4062156 4063052 - lysR-family transcriptional regulatory protein gene gene3677 http://www.ncbi.nlm.nih.gov/gene/?term=YE3720 YE3721 YE3721 YE3721 4063168 4063872 + conserved hypothetical protein gene gene3678 http://www.ncbi.nlm.nih.gov/gene/?term=YE3721 YE3722 YE3722 YE3722 4063938 4064993 - Probable NADP-dependent alcohol dehydrogenase Similar to Ralstonia solanacearum putative NADP-dependent alcohol dehydrogenase protein Rsc0632 or rs01534 SWALL:Q8Y1Q7 (EMBL:AL646060) (352 aa) fasta scores: E(): 1e-95%2C 67.62 38d in 349 aa%2C and to Pseudomonas aeruginosa probable alcohol dehydrogenase pa2275 SWALL:Q9I1J9 (EMBL:AE004653) (353 aa) fasta scores: E(): 7.3e-95%2C 68.28 38d in 350 aa%2C and to Xylella fastidiosa NADP-alcohol dehydrogenase xf1734 SWALL:Q9PCP4 (EMBL:AE003996) (348 aa) fasta scores: E(): 2.1e-93%2C67.62 38d in 349 aa gene gene3679 http://www.ncbi.nlm.nih.gov/gene/?term=YE3722 YE3723 YE3723 YE3723 4065125 4066120 - putative aldo/keto reductase gene gene3680 http://www.ncbi.nlm.nih.gov/gene/?term=YE3723 YE3724 YE3724 YE3724 4066304 4067197 + putative LysR-family transcriptional regulatory protein gene gene3681 http://www.ncbi.nlm.nih.gov/gene/?term=YE3724 YE3726 YE3726 YE3726 4067751 4068650 - putative tetrapyrrole methylase gene gene3682 http://www.ncbi.nlm.nih.gov/gene/?term=YE3726 YE3727 YE3727 YE3727 4068713 4070686 + putative exported protein gene gene3683 http://www.ncbi.nlm.nih.gov/gene/?term=YE3727 YE3728 YE3728 YE3728 4070730 4071083 + conserved hypothetical protein gene gene3684 http://www.ncbi.nlm.nih.gov/gene/?term=YE3728 YE3729 YE3729 YE3729 4071139 4071729 + probable phosphosugar isomerase gene gene3685 http://www.ncbi.nlm.nih.gov/gene/?term=YE3729 YE3730 YE3730 YE3730 4071740 4072315 + putative exported protein gene gene3686 http://www.ncbi.nlm.nih.gov/gene/?term=YE3730 YE3731 YE3731 mtgA mtgA 4072396 4073121 - monofunctional biosynthetic peptidoglycan transglycosylase gene gene3687 http://www.ncbi.nlm.nih.gov/gene/?term=YE3731 YE3732 YE3732 elbB elbB 4073118 4073771 - enhancing lycopene biosynthesis protein 2 gene gene3688 http://www.ncbi.nlm.nih.gov/gene/?term=YE3732 YE3733 YE3733 arcB arcB 4074154 4076490 - aerobic respiration control sensor/response regulatory protein gene gene3689 http://www.ncbi.nlm.nih.gov/gene/?term=YE3733 YE3734 YE3734 YE3734 4076786 4077688 - conserved hypothetical protein gene gene3690 http://www.ncbi.nlm.nih.gov/gene/?term=YE3734 YE3735 YE3735 gltB gltB 4078236 4082846 + glutamate synthase [NADPH] large chain precursor gene gene3691 http://www.ncbi.nlm.nih.gov/gene/?term=YE3735 YE3736 YE3736 gltD gltD 4082856 4084274 + glutamate synthase [NADPH] small chain gene gene3692 http://www.ncbi.nlm.nih.gov/gene/?term=YE3736 YE3737 YE3737 YE3737 4084540 4085025 + putative exported protein gene gene3693 http://www.ncbi.nlm.nih.gov/gene/?term=YE3737 YE3738 YE3738 sspB sspB 4085110 4085625 - putative stringent starvation protein B gene gene3694 http://www.ncbi.nlm.nih.gov/gene/?term=YE3738 YE3739 YE3739 sspA sspA 4085631 4086272 - putative stringent starvation protein A gene gene3695 http://www.ncbi.nlm.nih.gov/gene/?term=YE3739 YE3740 YE3740 rpsI rpsI 4086667 4087059 - 30S ribosomal protein S9 gene gene3696 http://www.ncbi.nlm.nih.gov/gene/?term=YE3740 YE3741 YE3741 rplM rplM 4087074 4087502 - 50S ribosomal protein L13 gene gene3697 http://www.ncbi.nlm.nih.gov/gene/?term=YE3741 YE3742 YE3742 YE3742 4087835 4088962 - conserved hypothetical protein gene gene3698 http://www.ncbi.nlm.nih.gov/gene/?term=YE3742 YE3743 YE3743 YE3743 4089186 4089590 + putative membrane protein gene gene3699 http://www.ncbi.nlm.nih.gov/gene/?term=YE3743 YE3744 YE3744 degQ degQ 4089861 4091234 + protease gene gene3700 http://www.ncbi.nlm.nih.gov/gene/?term=YE3744 YE3745 YE3745 degS degS 4091323 4092411 + protease gene gene3701 http://www.ncbi.nlm.nih.gov/gene/?term=YE3745 YE3746 YE3746 murA murA 4092490 4093758 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase gene gene3702 http://www.ncbi.nlm.nih.gov/gene/?term=YE3746 YE3747 YE3747 YE3747 4093880 4094143 - BolA-like protein gene gene3703 http://www.ncbi.nlm.nih.gov/gene/?term=YE3747 YE3748 YE3748 YE3748 4094309 4094632 - putative anti-sigma B factor antagonist gene gene3704 http://www.ncbi.nlm.nih.gov/gene/?term=YE3748 YE3749 YE3749 yrbC yrbC 4094635 4095261 - putative exported protein gene gene3705 http://www.ncbi.nlm.nih.gov/gene/?term=YE3749 YE3750 YE3750 yrbD yrbD 4095274 4095834 - putative membrane protein gene gene3706 http://www.ncbi.nlm.nih.gov/gene/?term=YE3750 YE3751 YE3751 yrbE yrbE 4095839 4096621 - putative membrane protein gene gene3707 http://www.ncbi.nlm.nih.gov/gene/?term=YE3751 YE3752 YE3752 yrbF yrbF 4096636 4097418 - putative ABC transporter ATP-binding protein gene gene3708 http://www.ncbi.nlm.nih.gov/gene/?term=YE3752 YE3753 YE3753 yrbG yrbG 4097845 4098819 + putative sodium/calcium exchanger protein gene gene3709 http://www.ncbi.nlm.nih.gov/gene/?term=YE3753 YE3754 YE3754 YE3754 4098877 4099854 + conserved hypothetical protein gene gene3710 http://www.ncbi.nlm.nih.gov/gene/?term=YE3754 YE3755 YE3755 YE3755 4099868 4100431 + conserved hypothetical protein gene gene3711 http://www.ncbi.nlm.nih.gov/gene/?term=YE3755 YE3756 YE3756 yrbK yrbK 4100428 4100991 + putative exported protein gene gene3712 http://www.ncbi.nlm.nih.gov/gene/?term=YE3756 YE3757 YE3757 YE3757 4100975 4101520 + conserved hypothetical protein gene gene3713 http://www.ncbi.nlm.nih.gov/gene/?term=YE3757 YE3758 YE3758 yhbG yhbG 4101527 4102252 + probable ABC transporter ATP-binding protein gene gene3714 http://www.ncbi.nlm.nih.gov/gene/?term=YE3758 YE3759 YE3759 rpoN rpoN 4102315 4103748 + RNA polymerase sigma-54 factor gene gene3715 http://www.ncbi.nlm.nih.gov/gene/?term=YE3759 YE3760 YE3760 yhbH yhbH 4103772 4104059 + probable sigma (54) modulation protein gene gene3716 http://www.ncbi.nlm.nih.gov/gene/?term=YE3760 YE3761 YE3761 ptsN ptsN 4104230 4104712 + nitrogen regulatory IIA protein gene gene3717 http://www.ncbi.nlm.nih.gov/gene/?term=YE3761 YE3762 YE3762 YE3762 4104791 4105642 + conserved hypothetical protein gene gene3718 http://www.ncbi.nlm.nih.gov/gene/?term=YE3762 YE3763 YE3763 ptsO ptsO 4105643 4105915 + putative phosphocarrier protein gene gene3719 http://www.ncbi.nlm.nih.gov/gene/?term=YE3763 YE3766 YE3766 pyrB pyrB 4107093 4108028 + aspartate carbamoyltransferase catalytic subunit gene gene3720 http://www.ncbi.nlm.nih.gov/gene/?term=YE3766 YE3767 YE3767 pyrI pyrI 4108040 4108504 + aspartate carbamoyltransferase regulatory chain gene gene3721 http://www.ncbi.nlm.nih.gov/gene/?term=YE3767 YE3768 YE3768 YE3768 4109020 4109406 + conserved hypothetical protein gene gene3722 http://www.ncbi.nlm.nih.gov/gene/?term=YE3768 YE3769 YE3769 YE3769 4109674 4111110 + conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1730 SWALL:Q9I307 (EMBL:AE004599) (470 aa) fasta scores: E(): 2.2e-134%2C 69.52 38d in 466 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1121 or rs04633 SWALL:Q8Y0C3 (EMBL:AL646062) (507 aa) fasta scores: E(): 1.5e-130%2C 68.81 38d in 465 aa gene gene3723 http://www.ncbi.nlm.nih.gov/gene/?term=YE3769 YE3770 YE3770 YE3770 4111104 4112033 + Conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1731 SWALL:Q9I306 (EMBL:AE004599) (317 aa) fasta scores: E(): 1.1e-51%2C 45.71 38d in 315 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1122 or rs04632 SWALL:Q8Y0C2 (EMBL:AL646062) (316 aa) fasta scores: E(): 2e-46%2C 43.87 38d in 310 aa gene gene3724 http://www.ncbi.nlm.nih.gov/gene/?term=YE3770 YE3771 YE3771 YE3771 4112030 4112851 + Conserved hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1732 pa1732 SWALL:Q9I305 (EMBL:AE004599) (266 aa) fasta scores: E(): 4e-54%2C 52.74 38d in 273 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1123 rsc1123 or rs04630 SWALL:Q8Y0C1 (EMBL:AL646062) (292 aa) fasta scores: E(): 1.4e-35%2C 40.65 38d in 273 aa gene gene3725 http://www.ncbi.nlm.nih.gov/gene/?term=YE3771 YE3772 YE3772 YE3772 4112875 4113609 + Hypothetical exported protein Similar to Pseudomonas aeruginosa hypothetical protein Pa1733 pa1733 SWALL:Q9I304 (EMBL:AE004599) (243 aa) fasta scores: E(): 9e-56%2C 59.24 38d in 238 aa%2C and to Ralstonia solanacearum hypothetical protein Rsc1124 rsc1124 or rs04629 SWALL:Q8Y0C0 (EMBL:AL646062) (304 aa) fasta scores: E(): 2.2e-47%2C 52.65 38d in 245 aa gene gene3726 http://www.ncbi.nlm.nih.gov/gene/?term=YE3772 YE3773 YE3773 treC treC 4113996 4115657 - putative trehalose-6-phosphate hydrolase gene gene3727 http://www.ncbi.nlm.nih.gov/gene/?term=YE3773 YE3774 YE3774 treB treB 4115725 4117140 - PTS system%2C trehalose-specific IIBC component gene gene3728 http://www.ncbi.nlm.nih.gov/gene/?term=YE3774 YE3775 YE3775 treR treR 4117357 4118304 - trehalose operon repressor gene gene3729 http://www.ncbi.nlm.nih.gov/gene/?term=YE3775 YE3776 YE3776 mgtA mgtA 4118811 4121531 + Mg2+ transporter ATPase Similar to Salmonella typhimurium Mg2+ transport ATPase MgtA or stm4456 SWALL:ATMA_SALTY (SWALL:P36640) (902 aa) fasta scores: E(): 0%2C 71.38 38d in 905 aa%2C and to Salmonella typhi Mg2+ transport ATPase MgtA or sty4796 SWALL:Q8Z132 (EMBL:AL627283) (902 aa) fasta scores: E(): 0%2C 71.38 38d in 905 aa gene gene3730 http://www.ncbi.nlm.nih.gov/gene/?term=YE3776 YE3777 YE3777 YE3777 4121653 4123581 - Putative transcriptional regulator Similar to Salmonella typhimurium putative phosphotransferase system mannitol/fructose-specific IIa domain stm4448 SWALL:Q8ZK41 (EMBL:AE008908) (637 aa) fasta scores: E(): 9.2e-164%2C 64.95 38d in 642 aa%2C and to Salmonella typhi putative BglB-family transcriptional antiterminator sty4787 SWALL:Q8Z139 (EMBL:AL627283) (657 aa) fasta scores: E(): 2.6e-163%2C 64.64 38d in 642 aa%3B Phosphophorylatable regulatory domains found in the BglG family transcriptional antiterminator gene gene3731 http://www.ncbi.nlm.nih.gov/gene/?term=YE3777 YE3778 YE3778 YE3778 4123653 4124876 - putative exported protein Similar to Ralstonia solanacearum putative hemagglutinin-related protein rsp0183 or rs04695 SWALL:Q8XTD0 (EMBL:AL646077) (410 aa) fasta scores: E(): 1.4e-22%2C 35.96 38d in 406 aa%2C and to Bacillus subtilis hypothetical protein YkgB ykgB SWALL:YKGB_BACSU (SWALL:O34499) (349 aa) fasta scores: E(): 9.2e-21%2C 33.05 id in 363 aa%2C and to Listeria monocytogenes hypothetical protein Lmo0558 lmo0558 SWALL:Q8Y9H0 (EMBL:AL591975) (346 aa) fasta scores: E(): 2.6e-19%2C 31.6 38d in 367 aa gene gene3732 http://www.ncbi.nlm.nih.gov/gene/?term=YE3778 YE3779 YE3779 YE3779 4124986 4125726 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4786 SWALL:Q8Z140 (EMBL:AL627283) (246 aa) fasta scores: E(): 3.3e-68%2C 78.77 38d in 245 aa gene gene3733 http://www.ncbi.nlm.nih.gov/gene/?term=YE3779 YE3780 YE3780 YE3780 4125730 4126842 - possible L-seryl-tRNA selenocysteine synthase Similar to Salmonella typhi hypothetical protein Sty4785 SWALL:Q8Z141 (EMBL:AL627283) (372 aa) fasta scores: E(): 1.3e-95%2C 72.75 38d in 367 aa%2C and to Salmonella typhimurium putative selenocysteine synthase stm4446 SWALL:Q8ZK43 (EMBL:AE008908) (372 aa) fasta scores: E(): 1.5e-95%2C 72.75 38d in 367 aa gene gene3734 http://www.ncbi.nlm.nih.gov/gene/?term=YE3780 YE3781 YE3781 YE3781 4126826 4127995 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty4784 SWALL:Q8Z142 (EMBL:AL627283) (377 aa) fasta scores: E(): 2.4e-86%2C 61.69 38d in 389 aa%2C and to Salmonella typhimurium putative dihydratase stm4445 SWALL:Q8ZK44 (EMBL:AE008908) (377 aa) fasta scores: E(): 4.3e-86%2C 61.44 38d in 389 aa gene gene3735 http://www.ncbi.nlm.nih.gov/gene/?term=YE3781 YE3782 YE3782 YE3782 4128190 4128843 - Putative inner membrane protein Similar to Salmonella typhimurium putative inner membrane protein stm4444 SWALL:Q8ZK45 (EMBL:AE008908) (214 aa) fasta scores: E(): 2.9e-66%2C 92.05 38d in 214 aa gene gene3736 http://www.ncbi.nlm.nih.gov/gene/?term=YE3782 YE3783 YE3783 YE3783 4128862 4129638 - putative exported protein Similar to Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein stm4443 or sty4782 SWALL:Q8XFG3 (EMBL:AE008908) (258 aa) fasta scores: E(): 1.5e-88%2C 85.27 38d in 258 aa gene gene3737 http://www.ncbi.nlm.nih.gov/gene/?term=YE3783 YE3784 YE3784 YE3784 4129652 4129948 - conserved hypothetical protein Similar to Salmonella typhimurium putative cytoplasmic protein stm4442 SWALL:Q8ZK46 (EMBL:AE008908) (100 aa) fasta scores: E(): 5.1e-22%2C 63.26 38d in 98 aa gene gene3738 http://www.ncbi.nlm.nih.gov/gene/?term=YE3784 YE3785 YE3785 YE3785 4129948 4130313 - conserved hypothetical protein Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein stm4441 or sty4780 SWALL:Q8XGX3 (EMBL:AE008908) (120 aa) fasta scores: E(): 6.2e-35%2C 84.03 38d in 119 aa gene gene3739 http://www.ncbi.nlm.nih.gov/gene/?term=YE3785 YE3786 YE3786 YE3786 4130337 4130681 - conserved hypothetical protein Similar to Salmonella typhimurium%2C and Salmonella typhi putative cytoplasmic protein stm4440 or sty4779 SWALL:Q8XGH7 (EMBL:AE008908) (112 aa) fasta scores: E(): 1.3e-18%2C 66.3 38d in 92 aa gene gene3740 http://www.ncbi.nlm.nih.gov/gene/?term=YE3786 YE3787 YE3787 rnk rnk 4131213 4131623 + regulator of nucleoside diphosphate kinase gene gene3741 http://www.ncbi.nlm.nih.gov/gene/?term=YE3787 YE3788 YE3788 YE3788 4131672 4132058 - putative cytochrome gene gene3742 http://www.ncbi.nlm.nih.gov/gene/?term=YE3788 YE3789 YE3789 pmbA pmbA 4132248 4133588 - Putative modulator of DNA gyrase gene gene3743 http://www.ncbi.nlm.nih.gov/gene/?term=YE3789 YE3790 YE3790 YE3790 4133757 4134302 + conserved hypothetical protein gene gene3744 http://www.ncbi.nlm.nih.gov/gene/?term=YE3790 YE3791 YE3791 YE3791 4134454 4134720 - putative ribonuclease inhibitor gene gene3745 http://www.ncbi.nlm.nih.gov/gene/?term=YE3791 YE3792 YE3792 YE3792 4134725 4135183 - putative ribonuclease gene gene3746 http://www.ncbi.nlm.nih.gov/gene/?term=YE3792 YE3793 YE3793 gabD gabD 4135296 4136789 - succinate-semialdehyde dehydrogenase [NADP+] Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 3.2e-105%2C56.19 38d in 468 aa%2C and to Salmonella typhimurium succinate-semialdehyde dehydrogenase i%2C NADP-dependent gabD or stm2791 SWALL:Q8ZMM2 (EMBL:AE008827) (482 aa) fasta scores: E(): 9.7e-107%2C 55.83 38d in 480 aa gene gene3747 http://www.ncbi.nlm.nih.gov/gene/?term=YE3793 YE3794 YE3794 yhcP yhcP 4136911 4138866 - putative membrane protein gene gene3748 http://www.ncbi.nlm.nih.gov/gene/?term=YE3794 YE3795 YE3795 yhcQ yhcQ 4138868 4139803 - putative HlyD family secretion protein gene gene3749 http://www.ncbi.nlm.nih.gov/gene/?term=YE3795 YE3796 YE3796 YE3796 4139811 4140014 - putative membrane protein gene gene3750 http://www.ncbi.nlm.nih.gov/gene/?term=YE3796 YE3797 YE3797 YE3797 4140327 4141238 + probable lysR-family transcriptional regulatory protein gene gene3751 http://www.ncbi.nlm.nih.gov/gene/?term=YE3797 YE3798 YE3798 tldD tldD 4141310 4142755 - putative modulator of DNA gyrase gene gene3752 http://www.ncbi.nlm.nih.gov/gene/?term=YE3798 YE3799 YE3799 YE3799 4142767 4143627 - putative carbon-nitrogen hydrolase gene gene3753 http://www.ncbi.nlm.nih.gov/gene/?term=YE3799 YE3800 YE3800 YE3800 4143624 4147499 - putative exported protein gene gene3754 http://www.ncbi.nlm.nih.gov/gene/?term=YE3800 YE3801 YE3801 cafA cafA 4147546 4149015 - ribonuclease G gene gene3755 http://www.ncbi.nlm.nih.gov/gene/?term=YE3801 YE3802 YE3802 yhdE yhdE 4149005 4149598 - putative inhibitor of septum formation gene gene3756 http://www.ncbi.nlm.nih.gov/gene/?term=YE3802 YE3803 YE3803 mreD mreD 4149612 4150100 - rod shape-determining protein MreD gene gene3757 http://www.ncbi.nlm.nih.gov/gene/?term=YE3803 YE3804 YE3804 mreC mreC 4150097 4151083 - rod shape-determining protein MreC gene gene3758 http://www.ncbi.nlm.nih.gov/gene/?term=YE3804 YE3805 YE3805 mreB mreB 4151183 4152226 - rod shape-determining protein MreB gene gene3759 http://www.ncbi.nlm.nih.gov/gene/?term=YE3805 YE3806 YE3806 yhdA yhdA 4152561 4154480 - putative exported protein gene gene3760 http://www.ncbi.nlm.nih.gov/gene/?term=YE3806 YE3807 YE3807 yhdH yhdH 4154765 4155742 + probable zinc-binding dehydrogenase gene gene3761 http://www.ncbi.nlm.nih.gov/gene/?term=YE3807 YE3808 YE3808 YE3808 4156006 4156935 + conserved hypothetical protein gene gene3762 http://www.ncbi.nlm.nih.gov/gene/?term=YE3808 YE3809 YE3809 YE3809 4156935 4157534 + putative membrane protein gene gene3763 http://www.ncbi.nlm.nih.gov/gene/?term=YE3809 YE3810 YE3810 aroQ aroQ 4157743 4158195 + putative class II dehydroquinase gene gene3764 http://www.ncbi.nlm.nih.gov/gene/?term=YE3810 YE3811 YE3811 accB accB 4158353 4158817 + biotin carboxyl carrier protein of acetyl-CoA carboxylase gene gene3765 http://www.ncbi.nlm.nih.gov/gene/?term=YE3811 YE3812 YE3812 accC accC 4158829 4160178 + biotin carboxylase gene gene3766 http://www.ncbi.nlm.nih.gov/gene/?term=YE3812 YE3813 YE3813 yhdT yhdT 4160453 4160695 + putative membrane protein gene gene3767 http://www.ncbi.nlm.nih.gov/gene/?term=YE3813 YE3814 YE3814 panF panF 4160685 4162139 + sodium/pantothenate symporter gene gene3768 http://www.ncbi.nlm.nih.gov/gene/?term=YE3814 YE3815 YE3815 prmA prmA 4162315 4163196 + ribosomal protein L11 methyltransferase gene gene3769 http://www.ncbi.nlm.nih.gov/gene/?term=YE3815 YE3816 YE3816 YE3816 4163625 4164590 + conserved hypothetical protein gene gene3770 http://www.ncbi.nlm.nih.gov/gene/?term=YE3816 YE3817 YE3817 fiS fiS 4164615 4164911 + DNA-binding protein Fis gene gene3771 http://www.ncbi.nlm.nih.gov/gene/?term=YE3817 YE3818 YE3818 YE3818 4164983 4166542 - Possible regulator involved in cell signalling Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 7.6e-80%2C 45.4 id in 511 aa%2C and to Agrobacterium tumefaciens two component response regulator pleD or atu1297 or agr_c_2387 SWALL:Q8UFV0 (EMBL:AE009091) (456 aa) fasta scores: E(): 3.6e-19%2C 29.24 38d in 465 aa%3B possible N-terminal membrane anchor gene gene3772 http://www.ncbi.nlm.nih.gov/gene/?term=YE3818 YE3819 YE3819 pcpY3 pcpY3 4166784 4167254 + outer membrane lipoprotein gene gene3773 http://www.ncbi.nlm.nih.gov/gene/?term=YE3819 YE3821 YE3821 cspA1 cspA1 4167654 4167866 + major cold shock protein CspA1 Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspA1 cspA1 SWALL:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 3e-27%2C 98.57 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1e-26%2C 95.71 id in 70 aa%2C and to Escherichia coli cold shock-like protein CspI cspI or cspJ or b1552 SWALL:CSPI_ECOLI (SWALL:P77605) (70 aa) fasta scores: E(): 6.5e-22%2C 82.85 id in 70 aa gene gene3774 http://www.ncbi.nlm.nih.gov/gene/?term=YE3821 YE3822 YE3822 cspA3 cspA3 4168133 4168345 + major cold shock protein CspA1 Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspaA cspA1 SWALL:Q9RIF2 (EMBL:U82821) (70 aa) fasta scores: E(): 3e-27%2C 98.57 38d in 70 aa%2C and to Yersinia pestis major cold shock protein CspA1 cspA1 or ypo3644 SWALL:Q8ZAY7 (EMBL:AJ414158) (70 aa) fasta scores: E(): 1e-26%2C 95.71 id in 70 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 cold shock-like protein CspG cspG or cspI or b0990 or z1406 or ecs1145 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 6.5e-22%2C 80 38d in 70 aa%3B probable tandem gene duplication event gene gene3775 http://www.ncbi.nlm.nih.gov/gene/?term=YE3822 YE3823 YE3823 cspA2 cspA2 4168613 4168825 + major cold shock protein Similar to previously sequenced Yersinia enterocolitica major cold shock protein CspA2 cspA2 SWALL:Q9RIF1 (EMBL:U82821) (70 aa) fasta scores: E(): 7.8e-28%2C 100 38d in 70 aa%2C and to Escherichia coli cold shock-like protein CspI cspI or cspJ or b1552 SWALL:CSPI_ECOLI (SWALL:P77605) (70 aa) fasta scores: E(): 3.2e-23%2C 84.28 38d in 70 aa gene gene3776 http://www.ncbi.nlm.nih.gov/gene/?term=YE3823 YE3824 YE3824 tpn1330 tpn1330 4169053 4170246 + transposase for IS1330 Highly similar to Yersinia enterocolitica IS10-like transposase for IS1330 element SWALL:Q8RSF5 (EMBL:AJ344215) (397 aa) fasta scores: E(): 5.5e-131%2C78.33 38d in 397 aa. Also similar to Shigella flexneri%2Cand Shigella flexneri 2A IS10 orf S0034 or Cp0027 SWALL:Q9AFX7 (EMBL:AF348706) (407 aa) fasta scores: E(): 2.5e-119%2C 73.04 38d in 397 aa. Note this copy of IS1330 although highly similar to the others within this genome may represent a descrete IS element. gene gene3777 http://www.ncbi.nlm.nih.gov/gene/?term=YE3824 YE3825 YE3825 YE3825 4170769 4171356 + transposase for insertion sequence element IS1328 (pseudogene) Previously sequenced as Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 1e-129%2C 97.9 38d in 334 aa. Also similar to Shigella flexneri 2a IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 1.4e-97%2C74.08 38d in 328 aa. Note this CDS carries a frame shift mutation following codon 137. pseudogene gene3778 http://www.ncbi.nlm.nih.gov/gene/?term=YE3825 YE3827 YE3827 YE3827 4172077 4173489 + putative membrane transport protein gene gene3779 http://www.ncbi.nlm.nih.gov/gene/?term=YE3827 YE3828 YE3828 YE3828 4173537 4173719 + Hypothetical protein Doubtful CDS gene gene3780 http://www.ncbi.nlm.nih.gov/gene/?term=YE3828 YE3829 YE3829 ddg ddg 4173848 4174768 + putative membrane protein gene gene3781 http://www.ncbi.nlm.nih.gov/gene/?term=YE3829 YE3830 YE3830 YE3830 4174815 4175633 - putative transposase for IS1664 element Similar to Yersinia pestis transposase for insertion sequence IS1661 SWALL:Q8XF80 (EMBL:AJ414160) (261 aa) fasta scores: E(): 5.9e-46%2C 50.19 38d in 257 aa. Also similar to Ralstonia solanacearum ISrsoII-transposase OrfB protein SWALL:Q8XX51 (EMBL:AL646069) (269 aa) fasta scores: E(): 7e-61%2C 58.11 38d in 265 aa%2C and to Escherichia coli putative transposase InsK for insertion sequence element IS150 SWALL:INSK_ECOLI (SWALL:P19769) (283 aa) fasta scores: E(): 7.1e-58%2C 53.43 38d in 262 aa gene gene3782 http://www.ncbi.nlm.nih.gov/gene/?term=YE3830 YE3831 YE3831 YE3831 4175669 4176193 - insertion element IS1664 protein Similar to Yersinia pestis insertion element IS1661 DNA-binding protein YPO0996 SWALL:Q8ZHA8 (EMBL:AJ414145)(178 aa) fasta scores: E(): 8.6e-14%2C 36.51 id in 178 aa%2C and to Klebsiella pneumoniae OrfA SWALL:Q9AG22 (EMBL:AF345899) (173 aa) fasta scores: E(): 1e-18%2C 40.22 38d in 174 aa gene gene3783 http://www.ncbi.nlm.nih.gov/gene/?term=YE3831 YE3832 YE3832 YE3832 4176282 4177820 - putative exported protein Similar to Salmonella typhi PqaA SWALL:Q9RN45 (EMBL:AF188291) (518 aa) fasta scores: E(): 1.3e-100%2C51.74 38d in 487 aa%3B highly similar to Salmonella PhoP/Q regulated gene gene gene3784 http://www.ncbi.nlm.nih.gov/gene/?term=YE3832 YE3833 YE3833 YE3833 4178242 4179267 + Putative ABC transporter periplasmic solute binding protein Similar to Escherichia coli O157:H7 putative amino-acid ABC transporter binding protein YhdW precursor or z4629 or ecs4141 SWALL:YHDW_ECO57 (SWALL:P58068) (341 aa) fasta scores: E(): 6.1e-116%2C 84.45 38d in 341 aa%2C and to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor SWALL:AAPJ_RHILV (SWALL:Q52812) (341 aa) fasta scores: E(): 2.4e-79%2C 57.43 id in 343 aa gene gene3785 http://www.ncbi.nlm.nih.gov/gene/?term=YE3833 YE3834 YE3834 YE3834 4179474 4180652 + Putative ABC transporter permease Similar to Escherichia coli O157:H7 putative transport system permease protein yhdX or z4630 or ecs4142 SWALL:Q8X5G4 (EMBL:AE005554) (393 aa) fasta scores: E(): 1.8e-118%2C 76.92 38d in 390 aa%2C and to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 1.7e-65%2C 49.86 38d in 383 aa gene gene3786 http://www.ncbi.nlm.nih.gov/gene/?term=YE3834 YE3835 YE3835 YE3835 4180662 4181771 + Putative ABC transporter permease protein Similar to Escherichia coli hypothetical amino-acid ABC transporter permease protein YhdY or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 4.9e-121%2C 80.81 38d in 370 aa%2C and to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6e-60%2C 49.07 38d in 377 aa gene gene3787 http://www.ncbi.nlm.nih.gov/gene/?term=YE3835 YE3836 YE3836 YE3836 4181768 4182541 + Putative ATP-binding component of an ABC transporter Similar to Escherichia coli O157:H7 putative ATP-binding component of a transport system yhdZ or z4632 or ecs4144 SWALL:Q8X4T3 (EMBL:AE005554) (252 aa) fasta scores: E(): 2.9e-79%2C 89.02 38d in 246 aa%2C and to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 1.4e-67%2C 74.89 38d in 243 aa gene gene3788 http://www.ncbi.nlm.nih.gov/gene/?term=YE3836 YE3837 YE3837 YE3837 4182612 4183301 - Putative inner membrane protein Similar to Salmonella typhimurium putative inner membrane protein stm4272 SWALL:Q8ZKF9 (EMBL:AE008900) (229 aa) fasta scores: E(): 8e-63%2C 72.92 38d in 229 aa gene gene3789 http://www.ncbi.nlm.nih.gov/gene/?term=YE3837 YE3838 YE3838 YE3838 4183848 4184774 + Putative LysR family transcriptional regulator Similar to Salmonella typhimurium putative transcriptional regulator%2C lysR family stm4270 SWALL:Q8ZKG0 (EMBL:AE008900) (295 aa) fasta scores: E(): 5.1e-78%2C 69.75 38d in 291 aa%2C and to Bacillus subtilis transcriptional regulatory protein GltC gltC SWALL:GLTC_BACSU (SWALL:P20668) (300 aa) fasta scores: E(): 2e-18%2C 26.19 38d in 294 aa gene gene3790 http://www.ncbi.nlm.nih.gov/gene/?term=YE3838 YE3839 YE3839 YE3839 4184781 4186430 - putative putative Na(+)/H(+) exchanger protein gene gene3791 http://www.ncbi.nlm.nih.gov/gene/?term=YE3839 YE3840 YE3840 YE3840 4186646 4187911 - putative xanthine/uracil permease gene gene3792 http://www.ncbi.nlm.nih.gov/gene/?term=YE3840 YE3841 YE3841 YE3841 4188489 4189160 - Putative glutathione S transferase Similar to Salmonella typhimurium putative glutathione S-transferase stm4267 SWALL:Q8ZKG3 (EMBL:AE008900) (222 aa) fasta scores: E(): 1.9e-50%2C54.26 38d in 223 aa%2C and to Pseudomonas syringae GstA gstA SWALL:Q9JP28 (EMBL:AF232004) (208 aa) fasta scores: E(): 5.5e-24%2C 45.53 38d in 224 aa gene gene3793 http://www.ncbi.nlm.nih.gov/gene/?term=YE3841 YE3842 YE3842 YE3842 4189423 4189725 + putative transcriptional regulator Similar to Ralstonia solanacearum putative transcription regulator protein hipB or rsp1252 or rs03197 SWALL:Q8XQH3 (EMBL:AL646083) (88 aa) fasta scores: E(): 7e-06%2C 37.5 38d in 88 aa%2C and to Ralstonia solanacearum putative transcription regulator protein rsc1447 or rs03860 SWALL:Q8XZF4 (EMBL:AL646064) (84 aa) fasta scores: E(): 4.5e-05%2C 40.58 38d in 69 aa gene gene3794 http://www.ncbi.nlm.nih.gov/gene/?term=YE3842 YE3843 YE3843 YE3843 4189727 4191055 + putative transcriptional regulator Similar to Escherichia coli protein HipA or b1507 SWALL:HIPA_ECOLI (SWALL:P23874) (440 aa) fasta scores: E(): 5.4e-61%2C 39.95 38d in 433 aa%2C and to Ralstonia solanacearum putative HipA transcription regulator protein or rsc1446 or rs03861 SWALL:Q8XZF5 (EMBL:AL646064) (445 aa) fasta scores: E(): 3.3e-78%2C 47.22 38d in 432 aa gene gene3795 http://www.ncbi.nlm.nih.gov/gene/?term=YE3843 YE3844 YE3844 ssb ssb 4191120 4191671 - single-strand binding protein gene gene3796 http://www.ncbi.nlm.nih.gov/gene/?term=YE3844 YE3845 YE3845 uvrA uvrA 4192071 4194902 + excinuclease ABC subunit A gene gene3797 http://www.ncbi.nlm.nih.gov/gene/?term=YE3845 YE3846 YE3846 YE3846 4194961 4195314 - conserved hypothetical protein gene gene3798 http://www.ncbi.nlm.nih.gov/gene/?term=YE3846 YE3847 YE3847 tyrB tyrB 4195781 4196974 - aromatic-amino-acid aminotransferase gene gene3799 http://www.ncbi.nlm.nih.gov/gene/?term=YE3847 YE3848 YE3848 alr alr 4197032 4198111 - alanine racemase (biosynthetic) gene gene3800 http://www.ncbi.nlm.nih.gov/gene/?term=YE3848 YE3849 YE3849 dnaB dnaB 4198141 4199547 - replicative DNA helicase gene gene3801 http://www.ncbi.nlm.nih.gov/gene/?term=YE3849 YE3850 YE3850 qor qor 4199738 4200721 + quinone oxidoreductase gene gene3802 http://www.ncbi.nlm.nih.gov/gene/?term=YE3850 YE3851 YE3851 YE3851 4200934 4201260 + Hypothetical protein No significant database hits gene gene3803 http://www.ncbi.nlm.nih.gov/gene/?term=YE3851 YE3852 YE3852 YE3852 4202026 4203054 - conserved hypothetical protein gene gene3804 http://www.ncbi.nlm.nih.gov/gene/?term=YE3852 YE3853 YE3853 YE3853 4203328 4203837 + putative regulatory protein gene gene3805 http://www.ncbi.nlm.nih.gov/gene/?term=YE3853 YE3854 YE3854 YE3854 4204123 4204332 - Conserved hypothetical protein Similar to Escherichia coli%2C and Escherichia coli O157:H7 protein YjbJ or b4045 or z5644 or ecs5028 SWALL:YJBJ_ECOLI (SWALL:P32691) (69 aa) fasta scores: E(): 9.8e-21%2C 81.15 38d in 69 aa gene gene3806 http://www.ncbi.nlm.nih.gov/gene/?term=YE3854 YE3855 YE3855 lexA lexA 4204644 4205252 - LexA repressor gene gene3807 http://www.ncbi.nlm.nih.gov/gene/?term=YE3855 YE3856 YE3856 dgkA dgkA 4205380 4205748 - diacylglycerol kinase gene gene3808 http://www.ncbi.nlm.nih.gov/gene/?term=YE3856 YE3857 YE3857 plsB plsB 4205874 4208342 + glycerol-3-phosphate acyltransferase gene gene3809 http://www.ncbi.nlm.nih.gov/gene/?term=YE3857 YE3858 YE3858 ubiA ubiA 4208400 4209266 - 4-hydroxybenzoate octaprenyltransferase gene gene3810 http://www.ncbi.nlm.nih.gov/gene/?term=YE3858 YE3859 YE3859 ubiC ubiC 4209291 4209797 - putative chorismate--pyruvate lyase gene gene3811 http://www.ncbi.nlm.nih.gov/gene/?term=YE3859 YE3860 YE3860 YE3860 4209936 4212857 - putative exported protein Similar to Shigella flexneri%2C and Shigella flexneri 2A OspG%2C secreted by the mxi-spa secretion machinery%2Cfunction unknown ospG or s0237 SWALL:Q99PZ6 (EMBL:AL391753) (196 aa) fasta scores: E(): 1.3e-09%2C37.32 38d in 142 aa%2C and to Escherichia coli O157:H7 hypothetical protein Z0989 z0989 or ecs0848 SWALL:Q8X831 (EMBL:AE005258) (293 aa) fasta scores: E(): 2.2e-05%2C35.29 38d in 153 aa gene gene3812 http://www.ncbi.nlm.nih.gov/gene/?term=YE3860 YE3861 YE3861 malM malM 4213110 4214045 - maltose operon periplasmic protein gene gene3813 http://www.ncbi.nlm.nih.gov/gene/?term=YE3861 YE3862 YE3862 lamB lamB 4214265 4215551 - maltoporin gene gene3814 http://www.ncbi.nlm.nih.gov/gene/?term=YE3862 YE3863 YE3863 malK malK 4215623 4216738 - maltose/maltodextrin transport ATP-binding protein gene gene3815 http://www.ncbi.nlm.nih.gov/gene/?term=YE3863 YE3864 YE3864 YE3864 4216726 4216926 - Hypothetical protein Doubtful CDS gene gene3816 http://www.ncbi.nlm.nih.gov/gene/?term=YE3864 YE3866 YE3866 malE malE 4217386 4218597 + maltose-binding periplasmic protein precursor gene gene3817 http://www.ncbi.nlm.nih.gov/gene/?term=YE3866 YE3867 YE3867 malF malF 4218807 4220384 + maltose transport system permease protein MalF gene gene3818 http://www.ncbi.nlm.nih.gov/gene/?term=YE3867 YE3868 YE3868 malG malG 4220398 4221288 + maltose transport system permease protein MalG gene gene3819 http://www.ncbi.nlm.nih.gov/gene/?term=YE3868 YE3869 YE3869 YE3869 4221513 4221920 - putative membrane protein gene gene3820 http://www.ncbi.nlm.nih.gov/gene/?term=YE3869 YE3870 YE3870 pgi pgi 4222024 4223670 - glucose-6-phosphate isomerase gene gene3821 http://www.ncbi.nlm.nih.gov/gene/?term=YE3870 YE3873 YE3873 lysC lysC 4224330 4225640 + lysine-sensitive aspartokinase III gene gene3822 http://www.ncbi.nlm.nih.gov/gene/?term=YE3873 YE3874 YE3874 YE3874 4225782 4226258 - Hypothetical protein gene gene3823 http://www.ncbi.nlm.nih.gov/gene/?term=YE3874 YE3875 YE3875 metH metH 4226279 4229974 - 5-Methyltetrahydrofolate--homocysteine methyltransferase gene gene3824 http://www.ncbi.nlm.nih.gov/gene/?term=YE3875 YE3876 YE3876 YE3876 4230215 4231054 + Putative IclR family transcriptional regulator Similar to Escherichia coli acetate operon repressor IclR or b4018 SWALL:ICLR_ECOLI (SWALL:P16528) (274 aa) fasta scores: E(): 1e-82%2C 78.26 38d in 276 aa%2Cand to Escherichia coli%2C and Escherichia coli O157:H7 negative regulator of allantoin and glyoxylate utilization operons allR or glxa3 or b0506 or z0660 or ecs0567 SWALL:ALLR_ECOLI (SWALL:P77734) (271 aa) fasta scores: E(): 1.8e-36%2C 39.55 38d in 268 aa gene gene3825 http://www.ncbi.nlm.nih.gov/gene/?term=YE3876 YE3877 YE3877 YE3877 4231120 4231977 - hypothetical protein located on insertion sequence element IS1666 Similar to many insertion sequence proteins including: Yersinia enterocolitica IS1329 transposase B SWALL:Q9X9I3 (EMBL:AJ132945) (249 aa) fasta scores: E(): 6.7e-32%2C 39.75 38d in 244 aa and Shigella flexneri 2A InsB Cp0269 SWALL:Q8VS98 (EMBL:AF386526) (279 aa) fasta scores: E(): 6e-90%2C 72 38d in 275 aa gene gene3826 http://www.ncbi.nlm.nih.gov/gene/?term=YE3877 YE3878 YE3878 YE3878 4231986 4232285 - putative transposase for insertion sequence element IS1666 Similar to many transposases including: Yersinia enterocolitica IS1329 transposase A SWALL:Q9X9I2 (EMBL:AJ132945) (110 aa) fasta scores: E(): 1.4e-10%2C 40.2 id in 97 aa and Shigella dysenteriae transposase InsN for insertion sequence element IS911 InsN SWALL:INSN_SHIDY (SWALL:P39213) (112 aa) fasta scores: E(): 2.2e-22%2C 70.1 id in 97 aa gene gene3827 http://www.ncbi.nlm.nih.gov/gene/?term=YE3878 YE3879 YE3879 aceK aceK 4232593 4234320 - isocitrate dehydrogenase kinase/phosphatase gene gene3828 http://www.ncbi.nlm.nih.gov/gene/?term=YE3879 YE3880 YE3880 aceA aceA 4234397 4235704 - isocitrate lyase gene gene3829 http://www.ncbi.nlm.nih.gov/gene/?term=YE3880 YE3881 YE3881 aceB aceB 4235877 4237475 - malate synthase A gene gene3830 http://www.ncbi.nlm.nih.gov/gene/?term=YE3881 YE3882 YE3882 metA metA 4237881 4238810 - homoserine O-succinyltransferase gene gene3831 http://www.ncbi.nlm.nih.gov/gene/?term=YE3882 YE3883 YE3883 YE3883 4245402 4245944 + putative transferase gene gene3839 http://www.ncbi.nlm.nih.gov/gene/?term=YE3883 YE3884 YE3884 aroE aroE 4246004 4246825 - shikimate 5-dehydrogenase gene gene3840 http://www.ncbi.nlm.nih.gov/gene/?term=YE3884 YE3885 YE3885 YE3885 4246834 4247406 - conserved hypothetical protein gene gene3841 http://www.ncbi.nlm.nih.gov/gene/?term=YE3885 YE3886 YE3886 YE3886 4247414 4247950 - putative DNA-binding protein gene gene3842 http://www.ncbi.nlm.nih.gov/gene/?term=YE3886 YE3887 YE3887 YE3887 4247992 4248429 - conserved hypothetical protein gene gene3843 http://www.ncbi.nlm.nih.gov/gene/?term=YE3887 YE3888 YE3888 YE3888 4248437 4249558 - conserved hypothetical protein gene gene3844 http://www.ncbi.nlm.nih.gov/gene/?term=YE3888 YE3889 YE3889 def def 4249692 4250204 + polypeptide deformylase gene gene3845 http://www.ncbi.nlm.nih.gov/gene/?term=YE3889 YE3890 YE3890 fmt fmt 4250229 4251176 + methionyl-tRNA formyltransferase gene gene3846 http://www.ncbi.nlm.nih.gov/gene/?term=YE3890 YE3891 YE3891 YE3891 4251468 4252757 + conserved hypothetical protein gene gene3847 http://www.ncbi.nlm.nih.gov/gene/?term=YE3891 YE3892 YE3892 trkA trkA 4252809 4254185 + trk system potassium uptake protein gene gene3848 http://www.ncbi.nlm.nih.gov/gene/?term=YE3892 YE3893 YE3893 mscL mscL 4254305 4254715 + mechanosensitive ion channel gene gene3849 http://www.ncbi.nlm.nih.gov/gene/?term=YE3893 YE3894 YE3894 YE3894 4254769 4254975 - conserved hypothetical protein gene gene3850 http://www.ncbi.nlm.nih.gov/gene/?term=YE3894 YE3895 YE3895 YE3895 4255065 4255490 - MerR-family transcriptional regulator gene gene3851 http://www.ncbi.nlm.nih.gov/gene/?term=YE3895 YE3896 YE3896 YE3896 4255494 4255865 - Conserved hypothetical protein Similar to Salmonella typhi hypothetical protein YhdN or sty4385 SWALL:Q8Z1X3 (EMBL:AL627282) (122 aa) fasta scores: E(): 5.2e-25%2C 57.5 38d in 120 aa%2C and to Escherichia coli hypothetical protein YhdN or b3293 SWALL:YHDN_ECOLI (SWALL:P36677) (122 aa) fasta scores: E(): 1.3e-23%2C 57.37 38d in 122 aa gene gene3852 http://www.ncbi.nlm.nih.gov/gene/?term=YE3896 YE3897 YE3897 rplQ rplQ 4256035 4256424 - 50S ribosomal protein L17 gene gene3853 http://www.ncbi.nlm.nih.gov/gene/?term=YE3897 YE3898 YE3898 rpoA rpoA 4256465 4257457 - DNA-directed RNA polymerase alpha chain gene gene3854 http://www.ncbi.nlm.nih.gov/gene/?term=YE3898 YE3899 YE3899 rpsD rpsD 4257483 4258103 - 30S ribosomal protein S4 gene gene3855 http://www.ncbi.nlm.nih.gov/gene/?term=YE3899 YE3900 YE3900 rpsK rpsK 4258134 4258523 - 30S ribosomal protein S11 gene gene3856 http://www.ncbi.nlm.nih.gov/gene/?term=YE3900 YE3901 YE3901 rpsM rpsM 4258540 4258896 - 30S ribosomal protein S13 gene gene3857 http://www.ncbi.nlm.nih.gov/gene/?term=YE3901 YE3902 YE3902 rpmJ rpmJ 4259044 4259160 - 50S ribosomal protein L36 gene gene3858 http://www.ncbi.nlm.nih.gov/gene/?term=YE3902 YE3903 YE3903 secY secY 4259195 4260526 - preprotein translocase SecY subunit gene gene3859 http://www.ncbi.nlm.nih.gov/gene/?term=YE3903 YE3904 YE3904 rplO rplO 4260534 4260968 - 50S ribosomal protein L15 gene gene3860 http://www.ncbi.nlm.nih.gov/gene/?term=YE3904 YE3905 YE3905 rpmD rpmD 4260972 4261151 - 50S ribosomal protein L30 gene gene3861 http://www.ncbi.nlm.nih.gov/gene/?term=YE3905 YE3906 YE3906 rpsE rpsE 4261154 4261657 - 30S ribosomal protein S5 gene gene3862 http://www.ncbi.nlm.nih.gov/gene/?term=YE3906 YE3907 YE3907 rplR rplR 4261672 4262025 - 50S ribosomal protein L18 gene gene3863 http://www.ncbi.nlm.nih.gov/gene/?term=YE3907 YE3908 YE3908 rplF rplF 4262035 4262568 - 50S ribosomal protein L6 gene gene3864 http://www.ncbi.nlm.nih.gov/gene/?term=YE3908 YE3909 YE3909 rpsH rpsH 4262583 4262975 - 30S ribosomal protein S8 gene gene3865 http://www.ncbi.nlm.nih.gov/gene/?term=YE3909 YE3910 YE3910 rpsN rpsN 4263009 4263314 - 30S ribosomal protein S14 gene gene3866 http://www.ncbi.nlm.nih.gov/gene/?term=YE3910 YE3911 YE3911 rplE rplE 4263328 4263867 - 50S ribosomal protein L5 gene gene3867 http://www.ncbi.nlm.nih.gov/gene/?term=YE3911 YE3912 YE3912 rplX rplX 4263882 4264196 - 50S ribosomal protein L24 gene gene3868 http://www.ncbi.nlm.nih.gov/gene/?term=YE3912 YE3913 YE3913 rplN rplN 4264207 4264578 - 50S ribosomal protein L14 gene gene3869 http://www.ncbi.nlm.nih.gov/gene/?term=YE3913 YE3914 YE3914 rpsQ rpsQ 4264744 4264998 - 30S ribosomal protein S17 gene gene3870 http://www.ncbi.nlm.nih.gov/gene/?term=YE3914 YE3915 YE3915 rpmC rpmC 4264998 4265189 - 50S ribosomal protein L29 gene gene3871 http://www.ncbi.nlm.nih.gov/gene/?term=YE3915 YE3916 YE3916 rplP rplP 4265189 4265599 - 50S ribosomal protein L16 gene gene3872 http://www.ncbi.nlm.nih.gov/gene/?term=YE3916 YE3917 YE3917 rpsC rpsC 4265612 4266310 - 30S ribosomal protein S3 gene gene3873 http://www.ncbi.nlm.nih.gov/gene/?term=YE3917 YE3918 YE3918 rplV rplV 4266328 4266660 - 50S ribosomal protein L22 gene gene3874 http://www.ncbi.nlm.nih.gov/gene/?term=YE3918 YE3919 YE3919 rpsS rpsS 4266675 4266953 - 30S ribosomal protein S19 gene gene3875 http://www.ncbi.nlm.nih.gov/gene/?term=YE3919 YE3920 YE3920 rplB rplB 4266968 4267792 - 50S ribosomal protein l2 gene gene3876 http://www.ncbi.nlm.nih.gov/gene/?term=YE3920 YE3921 YE3921 rplW rplW 4267809 4268111 - 50S ribosomal protein L23 gene gene3877 http://www.ncbi.nlm.nih.gov/gene/?term=YE3921 YE3922 YE3922 rplD rplD 4268108 4268713 - 50S ribosomal protein L4 gene gene3878 http://www.ncbi.nlm.nih.gov/gene/?term=YE3922 YE3923 YE3923 rplC rplC 4268724 4269353 - 50S ribosomal protein L3 gene gene3879 http://www.ncbi.nlm.nih.gov/gene/?term=YE3923 YE3924 YE3924 rpsJ rpsJ 4269386 4269697 - 30S ribosomal protein S10 gene gene3880 http://www.ncbi.nlm.nih.gov/gene/?term=YE3924 YE3925 YE3925 bfr bfr 4270078 4270551 - bacterioferritin gene gene3881 http://www.ncbi.nlm.nih.gov/gene/?term=YE3925 YE3926 YE3926 bfd bfd 4270631 4270825 - putative bacterioferritin-associated ferredoxin gene gene3882 http://www.ncbi.nlm.nih.gov/gene/?term=YE3926 YE3927 YE3927 tufA tufA 4270968 4272152 - elongation factor Tu gene gene3883 http://www.ncbi.nlm.nih.gov/gene/?term=YE3927 YE3928 YE3928 fusA fusA 4272224 4274338 - elongation factor G gene gene3884 http://www.ncbi.nlm.nih.gov/gene/?term=YE3928 YE3929 YE3929 rpsG rpsG 4274432 4274902 - 30S ribosomal protein S7 gene gene3885 http://www.ncbi.nlm.nih.gov/gene/?term=YE3929 YE3930 YE3930 rpsl rpsl 4274999 4275373 - 30S ribosomal protein S12 gene gene3886 http://www.ncbi.nlm.nih.gov/gene/?term=YE3930 YE3931 YE3931 YE3931 4275511 4275798 - conserved hypothetical protein gene gene3887 http://www.ncbi.nlm.nih.gov/gene/?term=YE3931 YE3932 YE3932 YE3932 4275818 4276183 - conserved hypothetical protein gene gene3888 http://www.ncbi.nlm.nih.gov/gene/?term=YE3932 YE3933 YE3933 YE3933 4276183 4276578 - conserved hypothetical protein gene gene3889 http://www.ncbi.nlm.nih.gov/gene/?term=YE3933 YE3934 YE3934 YE3934 4276578 4277312 - putative DNA-binding protein gene gene3890 http://www.ncbi.nlm.nih.gov/gene/?term=YE3934 YE3935 YE3935 fkpA fkpA 4277568 4278383 - peptidyl-prolyl cis-trans isomerase gene gene3891 http://www.ncbi.nlm.nih.gov/gene/?term=YE3935 YE3936 YE3936 YE3936 4278667 4278882 + conserved hypothetical protein gene gene3892 http://www.ncbi.nlm.nih.gov/gene/?term=YE3936 YE3937 YE3937 YE3937 4278942 4279106 + Hypothetical protein Similar to Yersinia pestis hypothetical protein Ypo2189 SWALL:Q8ZEI1 (EMBL:AJ414151) (82 aa) fasta scores: E(): 3.5e-08%2C 68.88 38d in 45 aa gene gene3893 http://www.ncbi.nlm.nih.gov/gene/?term=YE3937 YE3938 YE3938 slyD slyD 4279137 4279721 - peptidyl-prolyl cis-trans isomerase gene gene3894 http://www.ncbi.nlm.nih.gov/gene/?term=YE3938 YE3939 YE3939 YE3939 4279816 4280037 - conserved hypothetical protein gene gene3895 http://www.ncbi.nlm.nih.gov/gene/?term=YE3939 YE3940 YE3940 kefB kefB 4280052 4281860 - probable potassium-efflux system protein gene gene3896 http://www.ncbi.nlm.nih.gov/gene/?term=YE3940 YE3941 YE3941 YE3941 4281863 4282417 - conserved hypothetical protein gene gene3897 http://www.ncbi.nlm.nih.gov/gene/?term=YE3941 YE3942 YE3942 YE3942 4282769 4284685 + Putative ATPase component of an ABC transporter Similar to Salmonella typhimurium putative ATPase component of ABC transporter with duplicated ATPase domain YheS or stm3459 SWALL:Q8ZLL2 (EMBL:AE008858) (635 aa) fasta scores: E(): 1.5e-152%2C 82.14 38d in 633 aa gene gene3898 http://www.ncbi.nlm.nih.gov/gene/?term=YE3942 YE3943 YE3943 YE3943 4284748 4285716 + putative glycosyl transferase gene gene3899 http://www.ncbi.nlm.nih.gov/gene/?term=YE3943 YE3944 YE3944 YE3944 4285808 4286785 + putative sugar transferase gene gene3900 http://www.ncbi.nlm.nih.gov/gene/?term=YE3944 YE3945 YE3945 tauD tauD 4286814 4287662 - putative taurine dioxygenase gene gene3901 http://www.ncbi.nlm.nih.gov/gene/?term=YE3945 YE3946 YE3946 tauC tauC 4287659 4288462 - putative taurine transport system permease protein gene gene3902 http://www.ncbi.nlm.nih.gov/gene/?term=YE3946 YE3947 YE3947 tauB tauB 4288546 4289313 - putative taurine transport ATP-binding protein gene gene3903 http://www.ncbi.nlm.nih.gov/gene/?term=YE3947 YE3948 YE3948 tauA tauA 4289322 4290278 - putative taurine-binding periplasmic protein precursor gene gene3904 http://www.ncbi.nlm.nih.gov/gene/?term=YE3948 YE3949 YE3949 YE3949 4290637 4291425 - Hypothetical protein Similar to Pseudomonas aeruginosa hypothetical protein Pa3578 SWALL:YZ78_PSEAE (SWALL:Q9HY42) (261 aa) fasta scores: E(): 3.6e-42%2C 50.37 38d in 264 aa gene gene3905 http://www.ncbi.nlm.nih.gov/gene/?term=YE3949 YE3950 YE3950 YE3950 4291571 4292173 - putative ABC-transport protein gene gene3906 http://www.ncbi.nlm.nih.gov/gene/?term=YE3950 YE3951 YE3951 YE3951 4292275 4293255 + conserved hypothetical protein gene gene3907 http://www.ncbi.nlm.nih.gov/gene/?term=YE3951 YE3952 YE3952 YE3952 4293252 4293488 + conserved hypothetical protein gene gene3908 http://www.ncbi.nlm.nih.gov/gene/?term=YE3952 YE3953 YE3953 prk prk 4293630 4294499 + phosphoribulokinase 1 gene gene3909 http://www.ncbi.nlm.nih.gov/gene/?term=YE3953 YE3954 YE3954 YE3954 4294692 4295099 - conserved hypothetical protein gene gene3910 http://www.ncbi.nlm.nih.gov/gene/?term=YE3954 YE3955 YE3955 crp crp 4295434 4296066 + cAMP-regulatory protein gene gene3911 http://www.ncbi.nlm.nih.gov/gene/?term=YE3955 YE3956 YE3956 YE3956 4296139 4298259 + putative membrane protein gene gene3912 http://www.ncbi.nlm.nih.gov/gene/?term=YE3956 YE3957 YE3957 argD argD 4298476 4299693 - acetylornithine aminotransferase gene gene3913 http://www.ncbi.nlm.nih.gov/gene/?term=YE3957 YE3958 YE3958 pabA pabA 4299826 4300401 - para-aminobenzoate synthase glutamine amidotransferase component II gene gene3914 http://www.ncbi.nlm.nih.gov/gene/?term=YE3958 YE3959 YE3959 YE3959 4300422 4301885 - conserved hypothetical protein gene gene3915 http://www.ncbi.nlm.nih.gov/gene/?term=YE3959 YE3960 YE3960 ppiA ppiA 4302067 4302636 - peptidyl-prolyl cis-trans isomerase A gene gene3916 http://www.ncbi.nlm.nih.gov/gene/?term=YE3960 YE3961 YE3961 YE3961 4302989 4304302 + putative glycosyl hydrolase gene gene3917 http://www.ncbi.nlm.nih.gov/gene/?term=YE3961 YE3962 YE3962 YE3962 4304384 4305364 + LacI-family transcriptional regulator gene gene3918 http://www.ncbi.nlm.nih.gov/gene/?term=YE3962 YE3963 YE3963 YE3963 4305677 4306861 + conserved integral membrane protein gene gene3919 http://www.ncbi.nlm.nih.gov/gene/?term=YE3963 YE3964 YE3964 codA codA 4306911 4308218 - cytosine deaminase gene gene3920 http://www.ncbi.nlm.nih.gov/gene/?term=YE3964 YE3965 YE3965 nirB nirB 4308487 4311033 + nitrite reductase gene gene3921 http://www.ncbi.nlm.nih.gov/gene/?term=YE3965 YE3966 YE3966 nirD nirD 4311030 4311356 + nitrite reductase [NAD gene gene3922 http://www.ncbi.nlm.nih.gov/gene/?term=YE3966 YE3967 YE3967 nirC nirC 4311547 4312353 + putative nitrite transporter gene gene3923 http://www.ncbi.nlm.nih.gov/gene/?term=YE3967 YE3968 YE3968 cysG cysG 4312558 4313976 + siroheme synthase gene gene3924 http://www.ncbi.nlm.nih.gov/gene/?term=YE3968 YE3969 YE3969 trpS trpS 4314033 4315073 - tryptophanyl-tRNA synthetase gene gene3925 http://www.ncbi.nlm.nih.gov/gene/?term=YE3969 YE3970 YE3970 gph gph 4315075 4315773 - phosphoglycolate phosphatase gene gene3926 http://www.ncbi.nlm.nih.gov/gene/?term=YE3970 YE3971 YE3971 rpe rpe 4315766 4316443 - ribulose-phosphate 3-epimerase gene gene3927 http://www.ncbi.nlm.nih.gov/gene/?term=YE3971 YE3972 YE3972 dam dam 4316547 4317359 - DNA adenine methylase gene gene3928 http://www.ncbi.nlm.nih.gov/gene/?term=YE3972 YE3973 YE3973 YE3973 4317443 4318438 - conserved hypothetical membrane protein gene gene3929 http://www.ncbi.nlm.nih.gov/gene/?term=YE3973 YE3974 YE3974 aroB aroB 4318580 4319668 - 3-dehydroquinate synthase gene gene3930 http://www.ncbi.nlm.nih.gov/gene/?term=YE3974 YE3975 YE3975 aroK aroK 4319725 4320246 - shikimate kinase I gene gene3931 http://www.ncbi.nlm.nih.gov/gene/?term=YE3975 YE3976 YE3976 YE3976 4320594 4321709 - putative membrane transport protein gene gene3932 http://www.ncbi.nlm.nih.gov/gene/?term=YE3976 YE3976A YE3976A YE3976A 4321949 4322326 - putative exported protein Similar to Yersinia pestis putative membrane protein ypo0149 SWALL:Q8ZJF9 (EMBL:AJ414141) (122 aa) fasta scores: E(): 4.2e-14%2C 39.42 38d in 104 aa gene gene3933 http://www.ncbi.nlm.nih.gov/gene/?term=YE3976A YE3977 YE3977 YE3977 4322319 4322885 - putative membrane protein gene gene3934 http://www.ncbi.nlm.nih.gov/gene/?term=YE3977 YE3977A YE3977A YE3977A 4322878 4323426 - Putative membrane protein Similar to Yersinia pestis putative membrane protein ypo0147 SWALL:Q8ZJG1 (EMBL:AJ414141) (201 aa) fasta scores: E(): 2.4e-32%2C 59.88 38d in 177 aa%2C and to Yersinia pestis KIM hypothetical y3927 SWALL:AAM87471 (EMBL:AE013997) (177 aa) fasta scores: E(): 6.5e-25%2C57.89 38d in 152 aa gene gene3935 http://www.ncbi.nlm.nih.gov/gene/?term=YE3977A YE3978 YE3978 YE3978 4323426 4324343 - conserved hypothetical protein gene gene3936 http://www.ncbi.nlm.nih.gov/gene/?term=YE3978 YE3979 YE3979 mrcA mrcA 4324418 4326973 + penicillin-binding protein gene gene3937 http://www.ncbi.nlm.nih.gov/gene/?term=YE3979 YE3980 YE3980 YE3980 4327043 4327600 - putative hydrolase gene gene3938 http://www.ncbi.nlm.nih.gov/gene/?term=YE3980 YE3982 YE3982 YE3982 4328156 4330303 + putative membrane protein gene gene3939 http://www.ncbi.nlm.nih.gov/gene/?term=YE3982 YE3983 YE3983 YE3983 4330551 4331228 + conserved hypothetical protein gene gene3940 http://www.ncbi.nlm.nih.gov/gene/?term=YE3983 YE3984 YE3984 hslR hslR 4331265 4331672 + heat shock protein 15 gene gene3941 http://www.ncbi.nlm.nih.gov/gene/?term=YE3984 YE3985 YE3985 hslO hslO 4331780 4332616 + heat-shock chaperonin gene gene3942 http://www.ncbi.nlm.nih.gov/gene/?term=YE3985 YE3986 YE3986 pckA pckA 4332816 4334435 + phosphoenolpyruvate carboxykinase [ATP] gene gene3943 http://www.ncbi.nlm.nih.gov/gene/?term=YE3986 YE3987 YE3987 glpR glpR 4334717 4335475 - glycerol-3-phosphate repressor protein gene gene3944 http://www.ncbi.nlm.nih.gov/gene/?term=YE3987 YE3988 YE3988 glpG glpG 4335511 4336347 - probable membrane protein gene gene3945 http://www.ncbi.nlm.nih.gov/gene/?term=YE3988 YE3989 YE3989 YE3989 4336417 4336773 - conserved hypothetical protein gene gene3946 http://www.ncbi.nlm.nih.gov/gene/?term=YE3989 YE3990 YE3990 malT malT 4336909 4339620 - maltose regulon positive regulatory protein gene gene3947 http://www.ncbi.nlm.nih.gov/gene/?term=YE3990 YE3991 YE3991 malP malP 4339939 4342344 + phosphorylase (ec 2.4.1.1) gene gene3948 http://www.ncbi.nlm.nih.gov/gene/?term=YE3991 YE3992 YE3992 malQ malQ 4342357 4344453 + 4-alpha-glucanotransferase gene gene3949 http://www.ncbi.nlm.nih.gov/gene/?term=YE3992 YE3993 YE3993 YE3993 4344796 4345371 - conserved hypothetical protein gene gene3950 http://www.ncbi.nlm.nih.gov/gene/?term=YE3993 YE3994 YE3994 YE3994 4345431 4346114 - Putative competence-related protein F Similar to Haemophilus influenzae competence protein F comF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 6.5e-27%2C 39.81 38d in 221 aa%2Cand to Yersinia pestis hypothetical protein Ypo0128 ypo0128 SWALL:Q8ZJH9 (EMBL:AJ414141) (233 aa) fasta scores: E(): 7.8e-69%2C 74.24 38d in 233 aa gene gene3951 http://www.ncbi.nlm.nih.gov/gene/?term=YE3994 YE3995 YE3995 bioH bioH 4346346 4347122 + putative biotin biosynthesis protein gene gene3952 http://www.ncbi.nlm.nih.gov/gene/?term=YE3995 YE3996 YE3996 YE3996 4347237 4347500 + putative exported protein gene gene3953 http://www.ncbi.nlm.nih.gov/gene/?term=YE3996 YE3997 YE3997 YE3997 4347538 4347786 - conserved hypothetical protein gene gene3954 http://www.ncbi.nlm.nih.gov/gene/?term=YE3997 YE3998 YE3998 feoB feoB 4347800 4350115 - ferrous iron transport protein B gene gene3955 http://www.ncbi.nlm.nih.gov/gene/?term=YE3998 YE3999 YE3999 feoA feoA 4350209 4350433 - hypothetical ferrous iron transport protein A gene gene3956 http://www.ncbi.nlm.nih.gov/gene/?term=YE3999 YE4000 YE4000 teX teX 4351068 4353452 - putative transcription accessory protein Highly similar to Bordetella pertussis Tex protein SWALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 4.3e-161%2C 59.32 38d in 767 aa%2C and to Escherichia coli protein YhgF or b3407 SWALL:YHGF_ECOLI (SWALL:P46837) (773 aa) fasta scores: E(): 0%2C 81.86 38d in 794 aa gene gene3957 http://www.ncbi.nlm.nih.gov/gene/?term=YE4000 YE4001 YE4001 YE4001 4353492 4354109 - putative MFS-family transport protein Similar to Sulfolobus tokodaii hypothetical protein St2409 st2409 SWALL:Q96XV9 (EMBL:AP000990) (375 aa) fasta scores: E(): 2.7e-05%2C 22.59 38d in 177 aa gene gene3958 http://www.ncbi.nlm.nih.gov/gene/?term=YE4001 YE4002 YE4002 YE4002 4354121 4354702 - Hypothetical protein no significant database matches gene gene3959 http://www.ncbi.nlm.nih.gov/gene/?term=YE4002 YE4003 YE4003 greB greB 4355133 4355630 + transcription elongation factor gene gene3960 http://www.ncbi.nlm.nih.gov/gene/?term=YE4003 YE4004 YE4004 ompR ompR 4355751 4356470 + transcriptional regulatory protein gene gene3961 http://www.ncbi.nlm.nih.gov/gene/?term=YE4004 YE4005 YE4005 envZ envZ 4356467 4357819 + osmolarity sensor protein gene gene3962 http://www.ncbi.nlm.nih.gov/gene/?term=YE4005 YE4008 YE4008 glyD glyD 4358593 4360107 + aerobic glycerol-3-phosphate dehydrogenase gene gene3963 http://www.ncbi.nlm.nih.gov/gene/?term=YE4008 YE4009 YE4009 glgP glgP 4360202 4362649 - glycogen phosphorylase gene gene3964 http://www.ncbi.nlm.nih.gov/gene/?term=YE4009 YE4010 YE4010 glgA glgA 4362695 4364125 - glycogen synthase gene gene3965 http://www.ncbi.nlm.nih.gov/gene/?term=YE4010 YE4011 YE4011 glgC glgC 4364303 4365589 - glucose-1-phosphate adenylyltransferase gene gene3966 http://www.ncbi.nlm.nih.gov/gene/?term=YE4011 YE4012 YE4012 glgX glgX 4365599 4367587 - putative alpha-amylase gene gene3967 http://www.ncbi.nlm.nih.gov/gene/?term=YE4012 YE4013 YE4013 glgB glgB 4367589 4369772 - 1%2C4-alpha-glucan branching enzyme gene gene3968 http://www.ncbi.nlm.nih.gov/gene/?term=YE4013 YE4014 YE4014 YE4014 4370269 4371966 + putative membrane protein gene gene3969 http://www.ncbi.nlm.nih.gov/gene/?term=YE4014 YE4015 YE4015 budR budR 4371963 4372859 - Putative transcriptional regulator Similar to Klebsiella terrigena bud operon%2C2%2C3-butanediol synthesis%2C transcriptional regulator budR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 5.6e-56%2C 53.35 38d in 283 aa%2C and to Salmonella typhimurium putative transcriptional regulator stmr or stm3121 SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 1.5e-44%2C 42.95 38d in 291 aa. Note this could be a partner to YE4014 potential two-component histidine kinase%3B Possible regulator of budA and budB gene gene3970 http://www.ncbi.nlm.nih.gov/gene/?term=YE4015 YE4016 YE4016 budA budA 4372967 4373752 + alpha-acetolactate decarboxylase Similar to Enterobacter aerogenes alpha-acetolactate decarboxylase%2C involved in 2%2C3-butanediol synthesis%2C BudA or aldC SWALL:ALDC_ENTAE (SWALL:P05361) (260 aa) fasta scores: E(): 9.9e-66%2C 60.15 id in 256 aa%2C and to Bacillus subtilis alpha-acetolactate decarboxylase alsD SWALL:ALDC_BACSU (SWALL:Q04777) (255 aa) fasta scores: E(): 4.3e-41%2C 45.37 38d in 238 aa%2C and to Lactococcus lactis alpha-acetolactate decarboxylase aldb or ll1228 SWALL:ALDC_LACLA (SWALL:P95676) (236 aa) fasta scores: E(): 8.8e-26%2C 34.19 38d in 231 aa gene gene3971 http://www.ncbi.nlm.nih.gov/gene/?term=YE4016 YE4017 YE4017 budB budB 4373792 4375471 + acetolactate synthase%2C catabolic Similar to Klebsiella pneumoniae acetolactate synthase%2C catabolic%2C involved in 2%2C3-butanediol synthesis%2C BudB or ilvK SWALL:ILVB_KLEPN (SWALL:P27696) (559 aa) fasta scores: E(): 2.2e-152%2C 71.27 38d in 550 aa%2Cand to Bacillus subtilis acetolactate synthase alsS SWALL:ILVX_BACSU (SWALL:Q04789) (571 aa) fasta scores: E(): 5.7e-102%2C 50.82 38d in 549 aa%2C and to Lactococcus lactis alpha-acetolactate synthase als or ll1184 SWALL:Q48634 (EMBL:L16975) (554 aa) fasta scores: E(): 1.2e-92%2C 48.35 38d in 546 aa gene gene3972 http://www.ncbi.nlm.nih.gov/gene/?term=YE4017 YE4018 YE4018 asd asd 4375896 4376999 - aspartate semialdehyde dehydrogenase gene gene3973 http://www.ncbi.nlm.nih.gov/gene/?term=YE4018 YE4019 YE4019 yhgN yhgN 4377235 4377819 + putative membrane protein gene gene3974 http://www.ncbi.nlm.nih.gov/gene/?term=YE4019 YE4020 YE4020 YE4020 4377936 4378448 - putative gluconokinase gene gene3975 http://www.ncbi.nlm.nih.gov/gene/?term=YE4020 YE4021 YE4021 gntT gntT 4378670 4379986 + putative gluconate permease gene gene3976 http://www.ncbi.nlm.nih.gov/gene/?term=YE4021 YE4022 YE4022 gntR gntR 4380011 4381006 - gluconate utilization system Gnt-I transcriptional repressor gene gene3977 http://www.ncbi.nlm.nih.gov/gene/?term=YE4022 YE4023 YE4023 YE4023 4381299 4381994 - conserved hypothetical protein gene gene3978 http://www.ncbi.nlm.nih.gov/gene/?term=YE4023 YE4024 YE4024 YE4024 4382381 4382881 + Hypothetical protein Similar to Salmonella typhi putative acetyltransferase sty4265 SWALL:Q8Z238 (EMBL:AL627281) (162 aa) fasta scores: E(): 2.2e-35%2C 53.37 38d in 163 aa%2Cand to Escherichia coli%2C and Escherichia coli O157:H7 spermidine n(1)-acetyltransferase speg or b1584 or z2571 or ecs2290 SWALL:ATDA_ECOLI (SWALL:P37354) (185 aa) fasta scores: E(): 5.4e-05%2C 29.63 38d in 162 aa gene gene3979 http://www.ncbi.nlm.nih.gov/gene/?term=YE4024 YE4025 YE4025 YE4025 4382949 4383845 - conserved hypothetical protein Similar to Bacillus subtilis IolE protein iolE or e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.3e-53%2C 47.11 38d in 295 aa%2C and to Rhizobium leguminosarum MocC mocC SWALL:O85770 (EMBL:AF076240) (295 aa) fasta scores: E(): 1.6e-41%2C 40.2 id in 296 aa gene gene3980 http://www.ncbi.nlm.nih.gov/gene/?term=YE4025 YE4026 YE4026 idh idh 4383979 4384992 - myo-inositol 2-dehydrogenase Similar to Bacillus subtilis myo-inositol 2-dehydrogenase idh or iolG or e83G SWALL:MI2D_BACSU (SWALL:P26935) (344 aa) fasta scores: E(): 2.2e-83%2C 60.71 id in 336 aa%2C and to Ralstonia solanacearum putative oxidoreductase myo-inositol 2-dehydrogenase signal peptide protein iolg or rsc1246 or rs02754 SWALL:Q8XZZ9 (EMBL:AL646063) (337 aa) fasta scores: E(): 4.6e-94%2C69.85 38d in 335 aa gene gene3981 http://www.ncbi.nlm.nih.gov/gene/?term=YE4026 YE4027 YE4027 YE4027 4385072 4387012 - putative thiamine pyrophosphate-dependent protein gene gene3982 http://www.ncbi.nlm.nih.gov/gene/?term=YE4027 YE4028 YE4028 YE4028 4387501 4389402 + putative carbohydrate kinase gene gene3983 http://www.ncbi.nlm.nih.gov/gene/?term=YE4028 YE4029 YE4029 YE4029 4389687 4390520 + conserved hypothetical protein gene gene3984 http://www.ncbi.nlm.nih.gov/gene/?term=YE4029 YE4030 YE4030 YE4030 4390615 4391439 - conserved hypothetical protein gene gene3985 http://www.ncbi.nlm.nih.gov/gene/?term=YE4030 YE4031 YE4031 YE4031 4391495 4393000 - putative aldehyde dehydrogenase gene gene3986 http://www.ncbi.nlm.nih.gov/gene/?term=YE4031 YE4032 YE4032 YE4032 4393545 4394759 - Putative membrane transport protein Similar to Ralstonia solanacearum probable transmembrane protein rsp0078 or rs05543 SWALL:Q8XTM8 (EMBL:AL646076) (399 aa) fasta scores: E(): 1e-52%2C 44.61 id in 390 aa gene gene3987 http://www.ncbi.nlm.nih.gov/gene/?term=YE4032 YE4033 YE4033 YE4033 4394855 4395808 + Putative transcriptional regulator of the LysR family Similar to Pseudomonas aeruginosa transcriptional regulator ptxR or pa2258 SWALL:PTXR_PSEAE (SWALL:P72131) (312 aa) fasta scores: E(): 9.2e-24%2C 30.9 38d in 288 aa%2Cand to Synechocystis sp. transcriptional regulator slr1245 SWALL:P73778 (EMBL:D90909) (302 aa) fasta scores: E(): 4.8e-30%2C 32.64 38d in 291 aa gene gene3988 http://www.ncbi.nlm.nih.gov/gene/?term=YE4033 YE4034 YE4034 YE4034 4396053 4396757 + Hypothetical protein with putative haloacid dehalogenase-like hydrolase motif gene gene3989 http://www.ncbi.nlm.nih.gov/gene/?term=YE4034 YE4035 YE4035 btuR btuR 4397017 4397607 - cob(i)alamin adenosyltransferase Similar to Escherichia coli cob btuR or cobA or b1270 SWALL:BTUR_ECOLI (SWALL:P13040) (196 aa) fasta scores: E(): 2.6e-52%2C 67.34 38d in 196 aa%3B Similar to Yersinia pestis cob btuR or ypo2214 SWALL:Q8ZEF9 (EMBL:AJ414151) (196 aa) fasta scores: E(): 1.8e-53%2C 66.32 38d in 196 aa%3B possibly involved in the metabolism of adenosylcobalamin gene gene3990 http://www.ncbi.nlm.nih.gov/gene/?term=YE4035 YE4036 YE4036 fumB fumB 4397629 4399275 - fumarate hydratase class I%2C anaerobic Similar to Yersinia pestis fumarate hydratase%2Cclass I FumA or ypo3335 SWALL:Q8ZBR9 (EMBL:AJ414156) (547 aa) fasta scores: E(): 8.5e-169%2C 74.35 38d in 546 aa%3B Similar to Escherichia coli fumarate hydratase class I%2C anaerobic fumB or b4122 SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 1.9e-161%2C70.98 38d in 548 aa%3B regulated by FNR in E.coli gene gene3991 http://www.ncbi.nlm.nih.gov/gene/?term=YE4036 YE4037 YE4037 YE4037 4399544 4400464 - Putative LysR family transcriptional regulator Similar to Escherichia coli O157:H7 putative lysR-like transcriptional regulator z0885 or ecs0755 SWALL:Q8X4W1 (EMBL:AE005251) (301 aa) fasta scores: E(): 1.7e-72%2C 63.17 38d in 296 aa%3B Similar to Escherichia coli%2C and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcvA or b2808 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 1.3e-26%2C 32.78 id in 302 aa gene gene3992 http://www.ncbi.nlm.nih.gov/gene/?term=YE4037 YE4038 YE4038 cobA cobA 4400906 4401688 + uroporphyrin-III C-methyltransferase Similar to Bacillus megaterium uroporphyrin-III C-methyltransferase CobA SWALL:SUMT_BACME (SWALL:P29928) (238 aa) fasta scores: E(): 6.5e-40%2C 47.89 38d in 238 aa%2Cand to Listeria innocua hypothetical protein Lin1164 lin1164 SWALL:Q92CK7 (EMBL:AL596167) (493 aa) fasta scores: E(): 1.2e-50%2C 52.75 38d in 254 aa gene gene3993 http://www.ncbi.nlm.nih.gov/gene/?term=YE4038 YE4039 YE4039 pduX pduX 4401710 4402591 + PduX Similar to Salmonella typhimurium%2C and Salmonella enterica subsp. enterica serovar Typhimurium propanediol utilization pduX or stm2058 SWALL:Q9XDM4 (EMBL:AE008790) (300 aa) fasta scores: E(): 1.5e-54%2C 53.28 38d in 289 aa%3B involved in propanediol utilization gene gene3994 http://www.ncbi.nlm.nih.gov/gene/?term=YE4039 YE4040 YE4040 mamA mamA 4403047 4403493 + methylaspartate mutase Similar to Escherichia coli O157:H7 methylaspartate mutase S chain MamA or z0895 or ecs0764 SWALL:MAMA_ECO57 (SWALL:P58620) (149 aa) fasta scores: E(): 3.5e-41%2C 77.94 id in 136 aa gene gene3995 http://www.ncbi.nlm.nih.gov/gene/?term=YE4040 YE4041 YE4041 mutL mutL 4403490 4404881 + glutamate mutase Similar to Escherichia coli O157:H7 z0894 protein z0894 or ecs0763 SWALL:Q8X985 (EMBL:AE005251) (462 aa) fasta scores: E(): 3.5e-125%2C 66.16 38d in 461 aa%2C and to Clostridium tetanomorphum MutL protein mutL SWALL:MUTL_CLOTT (SWALL:Q05491) (462 aa) fasta scores: E(): 4.7e-40%2C 33.76 38d in 468 aa gene gene3996 http://www.ncbi.nlm.nih.gov/gene/?term=YE4041 YE4042 YE4042 mutE mutE 4404896 4406341 + methylaspartate mutase E chain Similar to Clostridium tetanomorphum methylaspartate mutase E chain mutE SWALL:GLME_CLOTT (SWALL:Q05509) (485 aa) fasta scores: E(): 1.1e-114%2C58.38 38d in 483 aa%2C and to Citrobacter amalonaticus glutamate mutase SWALL:O66144 (EMBL:AB005294) (481 aa) fasta scores: E(): 1.2e-163%2C 82.32 38d in 481 aa%3B High similarity to B12-dependent glutamate mutases gene gene3997 http://www.ncbi.nlm.nih.gov/gene/?term=YE4042 YE4043 YE4043 YE4043 4406341 4407585 + methylaspartate ammonia-lyase Similar to Clostridium tetanomorphum methylaspartate ammonia-lyase SWALL:MAAL_CLOTT (SWALL:Q05514) (413 aa) fasta scores: E(): 7.2e-82%2C 54.54 id in 407 aa%2C and to Citrobacter amalonaticus 3-methylaspartate ammonia-lyase SWALL:O66145 (EMBL:AB005294) (413 aa) fasta scores: E(): 1.5e-131%2C81.31 38d in 412 aa gene gene3998 http://www.ncbi.nlm.nih.gov/gene/?term=YE4043 YE4044 YE4044 YE4044 4407587 4408960 + conserved hypothetical protein Similar to Citrobacter amalonaticus DNA for 3-methylaspartate ammonia-lyase%2C glutamate mutase SWALL:O66146 (EMBL:AB005294) (295 aa) fasta scores: E(): 9.8e-97%2C 86.62 38d in 284 aa%2C and to Escherichia coli O157:H7 hypothetical protein z0891 z0891 or ecs0760 SWALL:Q8X991 (EMBL:AE005251) (456 aa) fasta scores: E(): 9.3e-140%2C 77.02 38d in 457 aa gene gene3999 http://www.ncbi.nlm.nih.gov/gene/?term=YE4044 YE4045 YE4045 YE4045 4408957 4409274 + conserved hypothetical protein Similar to Escherichia coli O157:H7 hypothetical protein z0890 or ecs0759 SWALL:Q8X998 (EMBL:AE005251) (105 aa) fasta scores: E(): 2.1e-29%2C 70.47 38d in 105 aa gene gene4000 http://www.ncbi.nlm.nih.gov/gene/?term=YE4045 YE4046 YE4046 YE4046 4409436 4410761 + Putative sodium-dicarboxylic acid transporter family protein Similar to Escherichia coli O157:H7 putative symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 1e-120%2C 76.83 id in 423 aa%2C and to Bacillus stearothermophilus proton/sodium-glutamate symport protein gltT SWALL:GLTT_BACST (SWALL:P24943) (421 aa) fasta scores: E(): 8.4e-53%2C 38.91 38d in 424 aa%3B High similarity to proton/sodium-glutamate symporters. Contains motif found in sodium-dicarboxylic acid transporters. Position adjacent to putative glutamate mutase genes may indicate that a glutamate transporter is more likely. gene gene4001 http://www.ncbi.nlm.nih.gov/gene/?term=YE4046 YE4047 YE4047 YE4047 4410848 4412047 - conserved hypothetical protein gene gene4002 http://www.ncbi.nlm.nih.gov/gene/?term=YE4047 YE4048 YE4048 YE4048 4412359 4413855 + phosphate transport protein gene gene4003 http://www.ncbi.nlm.nih.gov/gene/?term=YE4048 YE4049 YE4049 uspB uspB 4413962 4414297 - universal stress protein B gene gene4004 http://www.ncbi.nlm.nih.gov/gene/?term=YE4049 YE4050 YE4050 uspA uspA 4414990 4415436 + universal stress protein A gene gene4005 http://www.ncbi.nlm.nih.gov/gene/?term=YE4050 YE4051 YE4051 gdhA gdhA 4415700 4417043 + NADP-specific glutamate dehydrogenase gene gene4006 http://www.ncbi.nlm.nih.gov/gene/?term=YE4051 YE4052 YE4052 YE4052 4417247 4418725 + metalloprotease gene gene4007 http://www.ncbi.nlm.nih.gov/gene/?term=YE4052 YE4053 YE4053 YE4053 4418851 4419609 - conserved hypothetical protein gene gene4008 http://www.ncbi.nlm.nih.gov/gene/?term=YE4053 YE4054 YE4054 opdA opdA 4419613 4421655 - oligopeptidase A gene gene4009 http://www.ncbi.nlm.nih.gov/gene/?term=YE4054 YE4055 YE4055 YE4055 4421992 4422834 + conserved hypothetical protein gene gene4010 http://www.ncbi.nlm.nih.gov/gene/?term=YE4055 YE4057 YE4057 gor gor 4423078 4424430 + glutathione reductase gene gene4011 http://www.ncbi.nlm.nih.gov/gene/?term=YE4057 YE4059 YE4059 yapE yapE 4424724 4427969 - putative autotransporter protein gene gene4012 http://www.ncbi.nlm.nih.gov/gene/?term=YE4059 YE4060 YE4060 YE4060 4428381 4429370 + putative membrane protein gene gene4013 http://www.ncbi.nlm.nih.gov/gene/?term=YE4060 YE4061 YE4061 cdh cdh 4429436 4430158 + CDP-diacylglycerol pyrophosphatase gene gene4014 http://www.ncbi.nlm.nih.gov/gene/?term=YE4061 YE4062 YE4062 YE4062 4430163 4432283 - putative exported protein gene gene4015 http://www.ncbi.nlm.nih.gov/gene/?term=YE4062 YE4063 YE4063 YE4063 4432402 4433178 - conserved hypothetical protein gene gene4016 http://www.ncbi.nlm.nih.gov/gene/?term=YE4063 YE4064 YE4064 YE4064 4433428 4433628 + putative tautomerase gene gene4017 http://www.ncbi.nlm.nih.gov/gene/?term=YE4064 YE4065 YE4065 kdgK kdgK 4433773 4434717 + 2-dehydro-3-deoxygluconokinase gene gene4018 http://www.ncbi.nlm.nih.gov/gene/?term=YE4065 YE4066 YE4066 YE4066 4434877 4436382 - putative insulinase family protease gene gene4019 http://www.ncbi.nlm.nih.gov/gene/?term=YE4066 YE4067 YE4067 dctA dctA 4436866 4438158 - C4-dicarboxylate transport protein gene gene4020 http://www.ncbi.nlm.nih.gov/gene/?term=YE4067 YE4068 YE4068 YE4068 4438536 4439015 - putative exported protein gene gene4021 http://www.ncbi.nlm.nih.gov/gene/?term=YE4068 YE4069 YE4069 pelY pelY 4439140 4440858 - periplasmic pectate lyase precursor gene gene4022 http://www.ncbi.nlm.nih.gov/gene/?term=YE4069 YE4070 YE4070 YE4070 4440935 4441639 - putative exported protein gene gene4023 http://www.ncbi.nlm.nih.gov/gene/?term=YE4070 YE4071 YE4071 YE4071 4442362 4443891 - putative membrane protein gene gene4024 http://www.ncbi.nlm.nih.gov/gene/?term=YE4071 YE4072 YE4072 bcsC bcsC 4444122 4447607 - Probable BcsC protein involved in cellulose synthesis Similar to SWALL:BCSC_ACEXY (SWALL:) (1302 aa) fasta scores: E(): 2.4e-23%2C 22.49 38d in 1276 aa%2C and to SWALL:YHJL_ECOLI (SWALL:) (1140 aa) fasta scores: E(): 0%2C54.75 38d in 1136 aa%2C and to Pseudomonas fluorescens cellulose synthase operon protein c precursor bcsC or wssE SWALL:AAL71845 (EMBL:AY074776) (1279 aa) fasta scores: E(): 3.5e-28%2C 25.11 38d in 1302 aa gene gene4025 http://www.ncbi.nlm.nih.gov/gene/?term=YE4072 YE4072A YE4072A bcsZ bcsZ 4447589 4448716 - endoglucanase precursor (endo-1%2C4-beta-glucanase involved in cellulose degradation) Similar to Escherichia coli endoglucanase precursor bcsZ or bcsC or b3531 SWALL:GUN_ECOLI (SWALL:P37651) (368 aa) fasta scores: E(): 2.4e-90%2C 58.79 38d in 364 aa%2C and to Pseudomonas fluorescens endoglucanase precursor bcsZ or wssD SWALL:Q8RSY9 (EMBL:AY074776) (436 aa) fasta scores: E(): 5.4e-35%2C 40.41 38d in 386 aa gene gene4026 http://www.ncbi.nlm.nih.gov/gene/?term=YE4072A YE4073 YE4073 bcsB bcsB 4448722 4451028 - cyclic di-gmp binding protein precursor Similar to Acetobacter xylinus cyclic di-gmp binding protein precursor bcsB SWALL:O82860 (EMBL:AB010645) (802 aa) fasta scores: E(): 3.9e-54%2C28.49 38d in 765 aa%2C and to Salmonella typhi cyclic di-gmp binding protein precursor bcsB or sty4182 SWALL:Q8Z290 (EMBL:AL627281) (766 aa) fasta scores: E(): 2.5e-187%2C61.53 38d in 767 aa%2C and to Pseudomonas fluorescens cyclic di-gmp binding protein bcsb or wssC SWALL:AAL71843 (EMBL:AY074776) (689 aa) fasta scores: E(): 3.6e-67%2C32.99 38d in 691 aa gene gene4027 http://www.ncbi.nlm.nih.gov/gene/?term=YE4073 YE4074 YE4074 bcsA bcsA 4451036 4453663 - cellulose synthase 1 catalytic subunit [UDP-forming] Similar to Acetobacter xylinus cellulose synthase 1 catalytic subunit [udp-forming] bcsAI SWALL:Q9WX61 (EMBL:AB015802) (745 aa) fasta scores: E(): 9.7e-128%2C45.09 38d in 714 aa%2C and to SWALL:YHJO_ECOLI (SWALL:) (888 aa) fasta scores: E(): 0%2C 66.28 38d in 875 aa%2C and to Pseudomonas fluorescens cellulose synthase catalytic subunit [udp-forming] bcsA or wssB SWALL:AAL71842 (EMBL:AY074776) (739 aa) fasta scores: E(): 4.8e-155%2C53.17 38d in 694 aa%3B Highly similar to bcsA or wssB from amino acid position 120 gene gene4028 http://www.ncbi.nlm.nih.gov/gene/?term=YE4074 YE4075 YE4075 bcsF bcsF 4453660 4454397 - conserved hypothetical protein Similar to Salmonella typhi hypothetical protein yhjQ or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 4.8e-54%2C 58.13 38d in 246 aa%2C and to Pseudomonas fluorescens WssJ SWALL:AAL71850 (EMBL:AY074776) (324 aa) fasta scores: E(): 1.5e-13%2C28.76 38d in 226 aa gene gene4029 http://www.ncbi.nlm.nih.gov/gene/?term=YE4075 YE4076 YE4076 YE4076 4454401 4454592 - Hypothetical protein gene gene4030 http://www.ncbi.nlm.nih.gov/gene/?term=YE4076 YE4077 YE4077 bcsE bcsE 4454789 4456348 + conserved hypothetical protein Similar to Salmonella typhimurium putative cytoplasmic protein yhjS or stm3622 or bcsE SWALL:CAC86200 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.3e-91%2C45.72 38d in 514 aa%2C and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 3.9e-87%2C 44.37 38d in 507 aa gene gene4031 http://www.ncbi.nlm.nih.gov/gene/?term=YE4077 YE4078 YE4078 bcsG bcsG 4456536 4458188 + Putative inner membrane protein possibly involved in cellulose synthesis Similar to Salmonella typhimurium%2C and Salmonella typhi putative inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:CAC86202 (EMBL:AE008867) (559 aa) fasta scores: E(): 7.8e-141%2C 62.79 38d in 559 aa%2C and to Escherichia coli hypothetical protein yhju yhju or b3538 SWALL:YHJU_ECOLI (SWALL:P37659) (559 aa) fasta scores: E(): 1.1e-138%2C 62.52 38d in 547 aa gene gene4032 http://www.ncbi.nlm.nih.gov/gene/?term=YE4078 YE4079 YE4079 dppF dppF 4458531 4459388 - dipeptide transport ATP-binding protein gene gene4033 http://www.ncbi.nlm.nih.gov/gene/?term=YE4079 YE4080 YE4080 dppD dppD 4459550 4460530 - dipeptide transport ATP-binding protein gene gene4034 http://www.ncbi.nlm.nih.gov/gene/?term=YE4080 YE4081 YE4081 dppC dppC 4460544 4461446 - dipeptide transport system permease protein gene gene4035 http://www.ncbi.nlm.nih.gov/gene/?term=YE4081 YE4082 YE4082 dppB dppB 4461457 4462476 - dipeptide transport system permease protein gene gene4036 http://www.ncbi.nlm.nih.gov/gene/?term=YE4082 YE4083 YE4083 dppA dppA 4462836 4464443 - periplasmic dipeptide transport protein gene gene4037 http://www.ncbi.nlm.nih.gov/gene/?term=YE4083 YE4084 YE4084 YE4084 4465126 4466508 - putative exported protein gene gene4038 http://www.ncbi.nlm.nih.gov/gene/?term=YE4084 YE4085 YE4085 YE4085 4466537 4468162 - putative hemolysin activator protein gene gene4039 http://www.ncbi.nlm.nih.gov/gene/?term=YE4085 YE4086 YE4086 YE4086 4468292 4469404 - putative exported protein Similar to Yersinia pestis putative exported protein ypo4006 or y3823 SWALL:Q8ZA16 (EMBL:AJ414160) (463 aa) fasta scores: E(): 4.2e-44%2C 46.51 38d in 344 aa. Also weakly similar in parts to many hemagglutinin/hemolysin-related proteins including: Neisseria meningitidis nmb1779 SWALL:Q9JY23 (EMBL:AE002527) (1995 aa) fasta scores: E(): 1.9e-13%2C33.12 38d in 317 aa and to Serratia marcescens hemolysin precursor ShlA SWALL:HLYA_SERMA (SWALL:P15320) (1608 aa) fasta scores: E(): 4.5e-11%2C 26.01 38d in 319 aa gene gene4040 http://www.ncbi.nlm.nih.gov/gene/?term=YE4086 YE4087 YE4087 uhpC uhpC 4469823 4471154 - putative regulatory protein gene gene4042 http://www.ncbi.nlm.nih.gov/gene/?term=YE4087 YE4088 YE4088 uhpB uhpB 4471248 4472777 - two-component system%2C sensor kinase gene gene4043 http://www.ncbi.nlm.nih.gov/gene/?term=YE4088 YE4089 YE4089 uhpA uhpA 4472774 4473364 - two-component system response regulator gene gene4044 http://www.ncbi.nlm.nih.gov/gene/?term=YE4089 YE4090 YE4090 yhjW yhjW 4473476 4475167 - putative membrane protein gene gene4045 http://www.ncbi.nlm.nih.gov/gene/?term=YE4090 YE4091 YE4091 YE4091 4475427 4475852 - putative osmotic/stress related protein Similar to Ralstonia solanacearum probable organic hydroperoxide resistance protein ohr or rsp1107 or rs02615 SWALL:Q8XQW1 (EMBL:AL646082) (141 aa) fasta scores: E(): 4.3e-36%2C 67.85 38d in 140 aa%2C and to Acinetobacter calcoaceticus hypothetical 15.2 kDa protein in xcpr 3'region SWALL:YXC2_ACICA (SWALL:P70736) (143 aa) fasta scores: E(): 1.5e-34%2C 70 38d in 140 aa gene gene4046 http://www.ncbi.nlm.nih.gov/gene/?term=YE4091 YE4092 YE4092 YE4092 4476124 4477587 - putative membrane protein gene gene4047 http://www.ncbi.nlm.nih.gov/gene/?term=YE4092 YE4093 YE4093 YE4093 4477855 4479252 - amino acid permease gene gene4048 http://www.ncbi.nlm.nih.gov/gene/?term=YE4093 YE4094 YE4094 hutH hutH 4479362 4480885 - histidine ammonia-lyase gene gene4049 http://www.ncbi.nlm.nih.gov/gene/?term=YE4094 YE4095 YE4095 hutU hutU 4480894 4482585 - urocanate hydratase gene gene4050 http://www.ncbi.nlm.nih.gov/gene/?term=YE4095 YE4096 YE4096 YE4096 4482645 4482824 - Hypothetical protein Hypothetical protein with no significant hits in the databases gene gene4051 http://www.ncbi.nlm.nih.gov/gene/?term=YE4096 YE4097 YE4097 YE4097 4482954 4483127 - Hypothetical protein Hypothetical protein with no significant homology to proteins in the database gene gene4052 http://www.ncbi.nlm.nih.gov/gene/?term=YE4097 YE4098 YE4098 manA manA 4483223 4484416 - mannose-6-phosphate isomerase Similar to Escherichia coli mannose-6-phosphate isomerase manA or pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 2.7e-54%2C 42.96 id in 391 aa%2C and to Vibrio cholerae mannose-6-phosphate isomerase vc1827 SWALL:Q9KR20 (EMBL:AE004259) (388 aa) fasta scores: E(): 6.1e-66%2C 48.19 38d in 388 aa%2C and to Yersinia pestis mannose-6-phosphate isomerase manA or ypo2263 SWALL:Q8ZEB7 (EMBL:AJ414151) (391 aa) fasta scores: E(): 8.2e-56%2C 44.13 38d in 392 aa gene gene4053 http://www.ncbi.nlm.nih.gov/gene/?term=YE4098 YE4099 YE4099 bglA bglA 4484438 4485838 - Probable beta-glucosidase Similar to Clostridium perfringens beta-glucosidase cpe2309 SWALL:Q8XI15 (EMBL:AP003193) (459 aa) fasta scores: E(): 2.6e-103%2C 52.72 38d in 459 aa%2C and to Caldocellum saccharolyticum beta-glucosidase a bglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3.2e-46%2C 32.03 38d in 462 aa gene gene4054 http://www.ncbi.nlm.nih.gov/gene/?term=YE4099 YE4100 YE4100 YE4100 4485909 4488104 - Possible beta-1%2C4 mannanase Similar to Thermotoga neapolitana beta-mannosidase manB or man5 SWALL:AAK53459 (EMBL:Y17981) (666 aa) fasta scores: E(): 1.5e-06%2C 25.88 38d in 367 aa gene gene4055 http://www.ncbi.nlm.nih.gov/gene/?term=YE4100 YE4101 YE4101 YE4101 4488112 4489446 - Putative outer membrane porin Similar to Salmonella typhimurium sucrose porin precursor scrY SWALL:SCRY_SALTY (SWALL:P22340) (505 aa) fasta scores: E(): 7.4e-24%2C 28.85 38d in 447 aa%2C and to Escherichia coli maltoporin precursor lamB or malB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 1.4e-22%2C 29.53 38d in 474 aa gene gene4056 http://www.ncbi.nlm.nih.gov/gene/?term=YE4101 YE4102 YE4102 YE4102 4489690 4490964 - Putative cellobiose-specific phosphotransferase Similar to Vibrio cholerae pts system%2Ccellobiose-specific IIc component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 3.3e-63%2C36.97 38d in 430 aa%2C and to Bacillus stearothermophilus pts system%2C cellobiose-specific iic component celB SWALL:PTCC_BACST (SWALL:Q45400) (451 aa) fasta scores: E(): 9.7e-33%2C 31.17 38d in 433 aa%3B Probably involved in the uptake of cellobiose gene gene4057 http://www.ncbi.nlm.nih.gov/gene/?term=YE4102 YE4103 YE4103 YE4103 4491149 4491463 + pts system%2C cellobiose-specific IIb component Similar to Bacillus stearothermophilus pts system%2Ccellobiose-specific IIb component celA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 7.6e-11%2C 44.79 id in 96 aa%2C and to Vibrio cholerae pts system%2Ccellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.9e-15%2C50.49 38d in 101 aa%3B possibly involved in cellobiose transport gene gene4058 http://www.ncbi.nlm.nih.gov/gene/?term=YE4103 YE4104 YE4104 YE4104 4491474 4492799 + Putative phosphotransferase protein Similar to Lactococcus lactis pts system%2Clactose-specific IIbc component lacE SWALL:PTLB_LACLA (SWALL:P23531) (568 aa) fasta scores: E(): 1.9e-44%2C 34.65 id in 453 aa%2C and to Vibrio cholerae pts system%2Ccellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 5.9e-100%2C53.55 38d in 422 aa gene gene4059 http://www.ncbi.nlm.nih.gov/gene/?term=YE4104 YE4105 YE4105 YE4105 4492830 4493132 + Putative phosphotransferase protein Similar to Yersinia pestis pts system cellobiose-specific IIa component celC or ypo2680 SWALL:Q8ZDA8 (EMBL:AJ414153) (115 aa) fasta scores: E(): 1.1e-20%2C 64.58 38d in 96 aa%2C and to Escherichia coli%2C and Escherichia coli O157:H7 pts system cellobiose-specific IIa component celC or b1736 or z2766 or ecs2442 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 5.2e-20%2C 63.54 38d in 96 aa gene gene4060 http://www.ncbi.nlm.nih.gov/gene/?term=YE4105 YE4106 YE4106 YE4106 4493211 4494113 + Hypothetical ROK family protein Similar to Vibrio cholerae rok family protein vc0270 SWALL:Q9KV86 (EMBL:AE004115) (326 aa) fasta scores: E(): 5.8e-60%2C 52.04 38d in 294 aa%3B possibly not a transcriptional repressor since there is no HTH DNA-binding motif gene gene4061 http://www.ncbi.nlm.nih.gov/gene/?term=YE4106 YE4107 YE4107 YE4107 4494216 4495178 + putative transcriptional regulator Similar to Klebsiella pneumoniae ribose operon repressor rbsR SWALL:Q937H4 (EMBL:AJ292311) (94 aa) fasta scores: E(): 2.4e-20%2C 76.59 38d in 94 aa%3B contains PFAM motif from transcriptional repressors or periplasmic binding proteins%3B shares low similarity with transcriptional repressors and has no predicted signal sequence gene gene4062 http://www.ncbi.nlm.nih.gov/gene/?term=YE4107 YE4108 YE4108 YE4108 4495212 4495673 - hypothetical protein No significant hits in the databases gene gene4063 http://www.ncbi.nlm.nih.gov/gene/?term=YE4108 YE4109 YE4109 YE4109 4496817 4497812 - hypothetical protein No significant hits in the databases gene gene4064 http://www.ncbi.nlm.nih.gov/gene/?term=YE4109 YE4110 YE4110 YE4110 4497889 4498296 - Hypothetical protein gene gene4065 http://www.ncbi.nlm.nih.gov/gene/?term=YE4110 YE4111 YE4111 YE4111 4498512 4498793 - hypothetical protein Similar to Yersinia pestis KIM hypothetical y3270 SWALL:AAM86820 (EMBL:AE013928) (93 aa) fasta scores: E(): 3.3e-33%2C 81.72 38d in 93 aa gene gene4066 http://www.ncbi.nlm.nih.gov/gene/?term=YE4111 YE4112 YE4112 YE4112 4499404 4500513 + conserved ypothetical protein Similar to Neisseria meningitidis hypothetical protein Nma1635 SWALL:Q9JTU0 (EMBL:AL162756) (375 aa) fasta scores: E(): 2e-82%2C 57.1 38d in 366 aa%2C and to Campylobacter jejuni mloA SWALL:AAM00840 (EMBL:AF486549) (356 aa) fasta scores: E(): 1.6e-44%2C 41.15 38d in 345 aa gene gene4067 http://www.ncbi.nlm.nih.gov/gene/?term=YE4112 YE4113 YE4113 YE4113 4500962 4501330 - putative phage primase (fragment) No significant database matches to the full length CDS. N-terminus similar to Yersinia pestis putative regulatory protein ypo0878 SWALL:Q8ZHL3 (EMBL:AJ414145) (66 aa) fasta scores: E(): 3.1e-20%2C 96.77 38d in 62 aa%3B C-terminus similar to Yersinia pestis putative primase ypo0880 SWALL:Q8ZHL1 (EMBL:AJ414145) (763 aa) fasta scores: E(): 1.1e-44%2C 92.12 38d in 127 aa%3B CDS appears to be a fusion protein%2C possibly resulting from a deletion or insertion event pseudogene gene4068 http://www.ncbi.nlm.nih.gov/gene/?term=YE4113 YE4114 YE4114 YE4114 4501692 4502372 - conserved hypothetical protein (pseudogene) No significant database matches to the full length CDS. N-terminus similar to Yersinia pestis hypothetical protein Ypo0876 ypo0876 SWALL:Q8ZHL5 (EMBL:AJ414145) (78 aa) fasta scores: E(): 7.2e-25%2C 93.59 38d in 78 aa%3B C-terminus similar to Yersinia pestis hypothetical protein Ypo0877 ypo0877 SWALL:Q8ZHL4 (EMBL:AJ414145) (110 aa) fasta scores: E(): 6.8e-35%2C 87.27 38d in 110 aa pseudogene gene4069 http://www.ncbi.nlm.nih.gov/gene/?term=YE4114 YE4115 YE4115 YE4115 4502385 4502751 - conserved hypothetical protein (pseudogene) Similar to Yersinia pestis hypothetical protein Ypo0875 ypo0875 SWALL:Q8ZHL6 (EMBL:AJ414145) (121 aa) fasta scores: E(): 2.1e-39%2C 82.64 38d in 121 aa%2C and to Yersinia pestis KIM hypothetical y3257 SWALL:AAM86807 (EMBL:AE013927) (101 aa) fasta scores: E(): 7.6e-31%2C78.21 38d in 101 aa%3B Region that is similar to Yersinia pestis Ypo0875 contains a probable frameshift after codon 70 pseudogene gene4070 http://www.ncbi.nlm.nih.gov/gene/?term=YE4115 YE4117 YE4117 YE4117 4502800 4504014 - putative phage integrase gene gene4071 http://www.ncbi.nlm.nih.gov/gene/?term=YE4117 YE4118 YE4118 YE4118 4504402 4505595 - putative AraC-family transcriptional regulator gene gene4073 http://www.ncbi.nlm.nih.gov/gene/?term=YE4118 YE4119 YE4119 YE4119 4505679 4506863 - sugar transport system permease protein gene gene4074 http://www.ncbi.nlm.nih.gov/gene/?term=YE4119 YE4120 YE4120 YE4120 4506850 4508382 - sugar transport ATP-binding protein gene gene4075 http://www.ncbi.nlm.nih.gov/gene/?term=YE4120 YE4121 YE4121 YE4121 4508475 4509470 - sugar-binding periplasmic protein gene gene4076 http://www.ncbi.nlm.nih.gov/gene/?term=YE4121 YE4122 YE4122 xylA xylA 4509849 4511168 + xylose isomerase gene gene4077 http://www.ncbi.nlm.nih.gov/gene/?term=YE4122 YE4123 YE4123 xylB xylB 4511318 4512880 + xylulose kinase gene gene4078 http://www.ncbi.nlm.nih.gov/gene/?term=YE4123 YE4123A YE4123A YE4123A 4512828 4513595 - Putative fimbrial chaperone Similar to Yersinia pestis putative fimbrial chaperone ypo4041 SWALL:Q8Z9Y8 (EMBL:AJ414160) (255 aa) fasta scores: E(): 3.7e-63%2C 62.99 38d in 254 aa%2C and to Escherichia coli chaperone protein PapD precursor papD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 7.5e-35%2C 42.79 38d in 236 aa gene gene4079 http://www.ncbi.nlm.nih.gov/gene/?term=YE4123A YE4124 YE4124 YE4124 4513765 4514859 + Putative member of isochorismatase hydrolase family Similar to Agrobacterium tumefaciens hydrolase atu0265 or agr_c_456 SWALL:Q8UIM8 (EMBL:AE008998) (239 aa) fasta scores: E(): 4.5e-30%2C 49.16 38d in 179 aa%3B possible isochorismatase hydrolase gene gene4080 http://www.ncbi.nlm.nih.gov/gene/?term=YE4124 YE4125 YE4125 YE4125 4514862 4515788 + Putative transcriptional regulator Similar to Agrobacterium tumefaciens transcriptional regulator%2C araC family atu0264 or agr_c_453 SWALL:Q8UIM9 (EMBL:AE008998) (327 aa) fasta scores: E(): 1.7e-44%2C 44.62 38d in 307 aa%3B Member of the AraC family gene gene4081 http://www.ncbi.nlm.nih.gov/gene/?term=YE4125 YE4126 YE4126 YE4126 4515781 4516773 - putative membrane protein gene gene4082 http://www.ncbi.nlm.nih.gov/gene/?term=YE4126 YE4127 YE4127 mdfA mdfA 4517024 4518253 + multidrug translocase gene gene4083 http://www.ncbi.nlm.nih.gov/gene/?term=YE4127 YE4128 YE4128 YE4128 4518288 4519541 - conserved hypothetical protein Similar to Rhizobium sp. hypothetical 45.3 kDa protein Y4dM SWALL:Y4DM_RHISN (SWALL:P55412) (409 aa) fasta scores: E(): 2.5e-38%2C 35.34 38d in 382 aa gene gene4084 http://www.ncbi.nlm.nih.gov/gene/?term=YE4128 YE4129 YE4129 YE4129 4519545 4519856 - Hypothetical protein No significant hits in the databases gene gene4085 http://www.ncbi.nlm.nih.gov/gene/?term=YE4129 YE4130 YE4130 selB selB 4520019 4521911 - selenocysteinyl-tRNA-specific translation factor Similar to Escherichia coli selenocysteine-specific elongation factor SelB or FdhA or b3590 SWALL:SELB_ECOLI (SWALL:P14081) (614 aa) fasta scores: E(): 5.3e-65%2C 63.57 id in 626 aa%3B Similar to Yersinia pestis selenocysteinyl-tRNA-specific translation factor SelB pseudogene gene gene4086 http://www.ncbi.nlm.nih.gov/gene/?term=YE4130 YE4131 YE4131 selA selA 4521908 4523296 - L-seryl-tRNA selenium transferase gene gene4087 http://www.ncbi.nlm.nih.gov/gene/?term=YE4131 YE4132 YE4132 fdhE fdhE 4523328 4524257 - putative formate dehydrogenase formation protein gene gene4088 http://www.ncbi.nlm.nih.gov/gene/?term=YE4132 YE4133 YE4133 fdoI fdoI 4524257 4524907 - formate dehydrogenase%2C cytochrome b556 protein gene gene4089 http://www.ncbi.nlm.nih.gov/gene/?term=YE4133 YE4134 YE4134 fdoH fdoH 4524904 4525875 - formate dehydrogenase-O%2C iron-sulfur subunit gene gene4090 http://www.ncbi.nlm.nih.gov/gene/?term=YE4134 YE4135 YE4135 fdoG fdoG 4525888 4528935 - formate dehydrogenase-o%2C major subunit Similar to Escherichia coli formate dehydrogenase-o%2C major subunit fdoG or b3894 SWALL:FDOG_ECOLI (SWALL:P32176) (1016 aa) fasta scores: E(): 0%2C 86.51 38d in 1016 aa%2C and to Salmonella typhi formate dehydrogenase-o%2C major subunit fdoG or sty3839 SWALL:Q8Z2U6 (EMBL:AL627279) (1016 aa) fasta scores: E(): 0%2C 86.61 38d in 1016 aa%3B Major subunit of formate dehydrogenase contains an in-frame opal (UGA) codon. In E.coli formate dehydrogenase the opal stop codon is read-through by a selenocysteine tRNA gene gene4091 http://www.ncbi.nlm.nih.gov/gene/?term=YE4135 YE4137 YE4137 fdhD fdhD 4529146 4529973 + putative formate dehydrogenase gene gene4092 http://www.ncbi.nlm.nih.gov/gene/?term=YE4137 YE4138 YE4138 sodA sodA 4530100 4530723 + superoxide dismutase [Mn] gene gene4093 http://www.ncbi.nlm.nih.gov/gene/?term=YE4138 YE4139 YE4139 tar tar 4531081 4533030 + methyl-accepting chemotaxis protein II gene gene4094 http://www.ncbi.nlm.nih.gov/gene/?term=YE4139 YE4140 YE4140 YE4140 4533109 4533780 + conserved hypothetical protein Similar to Salmonella typhi hypothetical protein Sty3815 sty3815 SWALL:Q8Z2W0 (EMBL:AL627279) (250 aa) fasta scores: E(): 3.4e-65%2C 69.5 38d in 223 aa gene gene4095 http://www.ncbi.nlm.nih.gov/gene/?term=YE4140 YE4141 YE4141 YE4141 4533934 4534353 - Hypothetical protein Similar to Salmonella typhimurium McK protein SWALL:BAB91602 (EMBL:AP005147) (138 aa) fasta scores: E(): 1.3e-33%2C 65.94 38d in 138 aa gene gene4096 http://www.ncbi.nlm.nih.gov/gene/?term=YE4141 YE4142 YE4142 YE4142 4534350 4534748 - Hypothetical protein may have alternative start site at 4534577 gene gene4097 http://www.ncbi.nlm.nih.gov/gene/?term=YE4142 YE4143 YE4143 YE4143 4534879 4535235 - conserved hypothetical protein gene gene4098 http://www.ncbi.nlm.nih.gov/gene/?term=YE4143 YE4144 YE4144 YE4144 4535328 4536809 - Putative transcriptional regulator Similar to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 2.7e-65%2C 39.87 38d in 474 aa%2C and to Ralstonia solanacearum putative transcription regulator protein rsc0599 or rs04846 SWALL:Q8Y1U0 (EMBL:AL646060) (504 aa) fasta scores: E(): 4.9e-64%2C 39.19 38d in 472 aa gene gene4099 http://www.ncbi.nlm.nih.gov/gene/?term=YE4144 YE4145 YE4145 YE4145 4536915 4537565 + Putative inner membrane protein Similar to Rhizobium loti hypothetical protein Mll1430 SWALL:Q98KK8 (EMBL:AP002997) (198 aa) fasta scores: E(): 1e-23%2C 43.52 38d in 193 aa gene gene4100 http://www.ncbi.nlm.nih.gov/gene/?term=YE4145 YE4146 YE4146 mtlR mtlR 4537562 4538116 - mannitol operon repressor gene gene4101 http://www.ncbi.nlm.nih.gov/gene/?term=YE4146 YE4147 YE4147 mtlD mtlD 4538231 4539394 - mannitol-1-phosphate 5-dehydrogenase gene gene4102 http://www.ncbi.nlm.nih.gov/gene/?term=YE4147 YE4148 YE4148 mtlA mtlA 4539627 4541549 - PTS system%2C mannitol-specific IIABC component gene gene4103 http://www.ncbi.nlm.nih.gov/gene/?term=YE4148 YE4149 YE4149 yiaF yiaF 4542569 4543288 - putative exported protein gene gene4104 http://www.ncbi.nlm.nih.gov/gene/?term=YE4149 YE4150 YE4150 glyS glyS 4543536 4545605 - glycyl-tRNA synthetase beta subunit gene gene4105 http://www.ncbi.nlm.nih.gov/gene/?term=YE4150 YE4151 YE4151 glyQ glyQ 4545615 4546529 - glycyl-tRNA synthetase alpha subunit gene gene4106 http://www.ncbi.nlm.nih.gov/gene/?term=YE4151 YE4152 YE4152 tag tag 4546786 4547358 + DNA-3-methyladenine glycosylase gene gene4107 http://www.ncbi.nlm.nih.gov/gene/?term=YE4152 YE4153 YE4153 YE4153 4547355 4547810 + putative acetyltransferase gene gene4108 http://www.ncbi.nlm.nih.gov/gene/?term=YE4153 YE4154 YE4154 YE4154 4547924 4549378 + Putative exported protein Similar to Yersinia pestis putative exported protein ypo2884 SWALL:Q8ZCT1 (EMBL:AJ414154) (806 aa) fasta scores: E(): 5.6e-49%2C 38.06 38d in 444 aa gene gene4109 http://www.ncbi.nlm.nih.gov/gene/?term=YE4154 YE4155 YE4155 YE4155 4549470 4551641 + Putative exported protein Similar to Yersinia pestis hypothetical protein Ypo0466 ypo0466 SWALL:Q8ZIM9 (EMBL:AJ414142) (815 aa) fasta scores: E(): 2.1e-67%2C 31.79 38d in 717 aa gene gene4110 http://www.ncbi.nlm.nih.gov/gene/?term=YE4155 YE4156 YE4156 yiaD yiaD 4551867 4552526 + putative lipoprotein gene gene4111 http://www.ncbi.nlm.nih.gov/gene/?term=YE4156 YE4157 YE4157 YE4157 4552603 4553247 - conserved hypothetical protein gene gene4112 http://www.ncbi.nlm.nih.gov/gene/?term=YE4157 YE4158 YE4158 YE4158 4553427 4554887 + Putative transport protein Similar to Ralstonia solanacearum putative transport transmembrane protein rsc2324 or rs01224 SWALL:Q8XWZ4 (EMBL:AL646069) (475 aa) fasta scores: E(): 2.8e-74%2C 46.55 38d in 464 aa%2C and to Mycobacterium tuberculosis hypothetical 47.7 kDa protein rv1634 or mtcy01b2.26 or mt1670 SWALL:O06151 (EMBL:Z95554) (471 aa) fasta scores: E(): 1.6e-47%2C 34.25 38d in 470 aa gene gene4113 http://www.ncbi.nlm.nih.gov/gene/?term=YE4158 YE4159 YE4159 YE4159 4555157 4556137 + putative D-isomer specific 2-hydroxyacid dehydrogenase gene gene4114 http://www.ncbi.nlm.nih.gov/gene/?term=YE4159 YE4160 YE4160 malS malS 4556286 4558352 + alpha-amylase protein gene gene4115 http://www.ncbi.nlm.nih.gov/gene/?term=YE4160 YE4161 YE4161 avtA avtA 4558487 4559740 + valine--pyruvate aminotransferase gene gene4116 http://www.ncbi.nlm.nih.gov/gene/?term=YE4161 YE4162 YE4162 yidE yidE 4559886 4561544 - putative membrane protein gene gene4117 http://www.ncbi.nlm.nih.gov/gene/?term=YE4162 YE4163 YE4163 ibpB ibpB 4561809 4562282 - heat shock protein gene gene4118 http://www.ncbi.nlm.nih.gov/gene/?term=YE4163 YE4164 YE4164 ibpA ibpA 4562407 4562820 - heat shock protein gene gene4119 http://www.ncbi.nlm.nih.gov/gene/?term=YE4164 YE4165 YE4165 YE4165 4563203 4563541 + putative lipoprotein gene gene4120 http://www.ncbi.nlm.nih.gov/gene/?term=YE4165 YE4166 YE4166 YE4166 4563543 4564844 - conserved hypothetical protein Similar to Salmonella typhi putative ATP/GTP-binding protein sty3967 SWALL:Q8Z2M0 (EMBL:AL627280) (408 aa) fasta scores: E(): 4.9e-41%2C62.14 38d in 420 aa%2C and to Escherichia coli hypothetical protein YidR yidR or b3689 SWALL:YIDR_ECOLI (SWALL:P31455) (416 aa) fasta scores: E(): 5.4e-38%2C 62.65 38d in 407 aa gene gene4121 http://www.ncbi.nlm.nih.gov/gene/?term=YE4166 YE4167 YE4167 YE4167 4564986 4565945 + pyridoxal-phosphate dependent enzyme gene gene4122 http://www.ncbi.nlm.nih.gov/gene/?term=YE4167 YE4168 YE4168 YE4168 4565942 4566880 + putative ornithine cyclodeaminase gene gene4123 http://www.ncbi.nlm.nih.gov/gene/?term=YE4168 YE4169 YE4169 YE4169 4567039 4567848 - putative haloacid dehalogenase-like hydrolase gene gene4124 http://www.ncbi.nlm.nih.gov/gene/?term=YE4169 YE4170 YE4170 gyrB gyrB 4568018 4570432 - DNA gyrase subunit B gene gene4125 http://www.ncbi.nlm.nih.gov/gene/?term=YE4170 YE4171 YE4171 recF recF 4570452 4571537 - DNA metabolism protein gene gene4126 http://www.ncbi.nlm.nih.gov/gene/?term=YE4171 YE4172 YE4172 dnaN dnaN 4571700 4572800 - DNA polymerase III%2C beta subunit protein gene gene4127 http://www.ncbi.nlm.nih.gov/gene/?term=YE4172 YE4173 YE4173 dnaA dnaA 4572805 4574193 - chromosomal replication initiator protein gene gene4128 http://www.ncbi.nlm.nih.gov/gene/?term=YE4173 YE4174 YE4174 YE4174 4574542 4574862 + Hypothetical protein Possible CDS. No significant database hits gene gene4129 http://www.ncbi.nlm.nih.gov/gene/?term=YE4174 YE4175 YE4175 rpmH rpmH 4574898 4575038 + 50S ribosomal protein L34 gene gene4130 http://www.ncbi.nlm.nih.gov/gene/?term=YE4175 YE4176 YE4176 rnpA rnpA 4575057 4575416 + ribonuclease P protein gene gene4131 http://www.ncbi.nlm.nih.gov/gene/?term=YE4176 YE4177 YE4177 yidC yidC 4575640 4577286 + probable membrane protein gene gene4132 http://www.ncbi.nlm.nih.gov/gene/?term=YE4177 YE4178 YE4178 thdF thdF 4577454 4578818 + putative thiophene and furan oxidation protein gene gene4133 http://www.ncbi.nlm.nih.gov/gene/?term=YE4178 YE4179 YE4179 YE4179 4578927 4580126 + conserved hypothetical protein gene gene4134 http://www.ncbi.nlm.nih.gov/gene/?term=YE4179 YE4180 YE4180 YE4180 4580352 4581167 + Possible component of an ABC transporter system Similar to Neisseria meningitidis outer membrane lipoprotein Gna1946 gna1946 SWALL:Q9JPN5 (EMBL:AF226487) (287 aa) fasta scores: E(): 1.4e-31%2C 40.4 38d in 245 aa%2Cand to Salmonella typhimurium%2C and Salmonella enteritidis putative ABC-type transport system ATPase component/cell division protein sfba or stm0510 SWALL:Q9S4Z1 (EMBL:AE008719) (276 aa) fasta scores: E(): 1.5e-29%2C36.39 38d in 272 aa gene gene4135 http://www.ncbi.nlm.nih.gov/gene/?term=YE4180 YE4181 YE4181 YE4181 4581179 4582195 + Putative ABC transport family protein Similar to Staphylococcus aureus hypothetical protein sav0462 or sa0420 SWALL:Q99WE1 (EMBL:AP003359) (341 aa) fasta scores: E(): 2.5e-59%2C 53.07 38d in 341 aa%2Cand to SWALL:ABC_ECOLI (SWALL:) (343 aa) fasta scores: E(): 2.9e-50%2C 45.85 38d in 338 aa gene gene4136 http://www.ncbi.nlm.nih.gov/gene/?term=YE4181 YE4182 YE4182 YE4182 4582192 4582857 + Putative ABC transport permease component Similar to Staphylococcus aureus hypothetical protein Sav0463 or sa0421 SWALL:Q99WE0 (EMBL:AP003359) (219 aa) fasta scores: E(): 6e-48%2C 66.98 38d in 209 aa%2Cand to SWALL:YAEE_ECOLI (SWALL:) (217 aa) fasta scores: E(): 2.6e-30%2C 45.93 38d in 209 aa gene gene4137 http://www.ncbi.nlm.nih.gov/gene/?term=YE4182 YE4183 YE4183 YE4183 4583178 4585136 - Putative methyl-accepting chemotaxis receptor protein Similar to Ralstonia solanacearum putative methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 1.4e-56%2C 44.28 38d in 499 aa%2C and to Salmonella typhimurium methyl-accepting chemotaxis protein II tar or chem or stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4e-48%2C 53.37 38d in 326 aa gene gene4138 http://www.ncbi.nlm.nih.gov/gene/?term=YE4183 YE4184 YE4184 ssuE ssuE 4585342 4585914 + putative NAD(P)H-dependent FMN reductase gene gene4139 http://www.ncbi.nlm.nih.gov/gene/?term=YE4184 YE4185 YE4185 YE4185 4586022 4587371 + Probable two-component sensor kinase Similar to Rhizobium loti two-component c4-dicarboxylate transport system%2C sensor protein mlr7238 SWALL:Q986R7 (EMBL:AP003011) (601 aa) fasta scores: E(): 4.4e-21%2C 34.82 38d in 224 aa%2C and to Rhizobium meliloti sensor protein fixl fixl or ra0670 or sma1229 SWALL:FIXL_RHIME (SWALL:P10955) (505 aa) fasta scores: E(): 4.8e-17%2C 31.48 38d in 235 aa gene gene4140 http://www.ncbi.nlm.nih.gov/gene/?term=YE4185 YE4186 YE4186 YE4186 4587397 4587948 + Probable two-component response regulator Similar to Agrobacterium tumefaciens two component response regulator nwsb or atu1116 or agr_c_2066 SWALL:Q8UGC2 (EMBL:AE009075) (202 aa) fasta scores: E(): 2.7e-22%2C 42.1 38d in 171 aa%2C and to Bradyrhizobium japonicum transcriptional regulatory protein FixJ fixJ SWALL:FIXJ_BRAJA (SWALL:P23221) (205 aa) fasta scores: E(): 2.7e-19%2C 37.14 38d in 175 aa%3B Potential regulatory partner to YE4185 sensor kinase gene gene4141 http://www.ncbi.nlm.nih.gov/gene/?term=YE4186 YE4187 YE4187 YE4187 4588307 4588798 + Hypothetical exported protein Similar to Agrobacterium tumefaciens hypothetical protein atu1117 or agr_c_2067 SWALL:Q8UGC1 (EMBL:AE009075) (160 aa) fasta scores: E(): 2.7e-15%2C 40.12 38d in 162 aa gene gene4142 http://www.ncbi.nlm.nih.gov/gene/?term=YE4187 YE4188 YE4188 yieG yieG 4588884 4590212 - Xanthine/uracil permeases family protein gene gene4143 http://www.ncbi.nlm.nih.gov/gene/?term=YE4188 YE4189 YE4189 YE4189 4590482 4591150 + putative haloacid dehalogenase-like hydrolase gene gene4144 http://www.ncbi.nlm.nih.gov/gene/?term=YE4189 YE4190 YE4190 YE4190 4591147 4591902 - putative amino acid transport system permease gene gene4145 http://www.ncbi.nlm.nih.gov/gene/?term=YE4190 YE4191 YE4191 YE4191 4591904 4592641 - ABC transporter permease gene gene4146 http://www.ncbi.nlm.nih.gov/gene/?term=YE4191 YE4193 YE4193 YE4193 4592871 4593725 - putative periplasmic solute-binding protein gene gene4147 http://www.ncbi.nlm.nih.gov/gene/?term=YE4193 YE4194 YE4194 YE4194 4594015 4595205 + Possible tyrosine phosphatase No significant database hits to the N-terminal 120 amino acids. Similar to Salmonella typhimurium protein tyrosine phosphatase SptP or stm2878 SWALL:P74873 (EMBL:U63293) (543 aa) fasta scores: E(): 5.1e-17%2C 36.31 id in 201 aa%2C and to Yersinia enterocolitica secreted effector protein-tyrosine phosphatase YopH or yop51 SWALL:YOPH_YEREN (SWALL:P15273) (468 aa) fasta scores: E(): 1.4e-15%2C 34.3 38d in 274 aa gene gene4148 http://www.ncbi.nlm.nih.gov/gene/?term=YE4194 YE4195 YE4195 YE4195 4595275 4595613 + Hypothetical protein No significant database hits gene gene4149 http://www.ncbi.nlm.nih.gov/gene/?term=YE4195 YE4196 YE4196 phoU phoU 4595724 4596446 - putative phosphate transport system protein gene gene4150 http://www.ncbi.nlm.nih.gov/gene/?term=YE4196 YE4198 YE4198 pstB pstB 4596616 4597392 - putative phosphate transport ATP-binding protein gene gene4151 http://www.ncbi.nlm.nih.gov/gene/?term=YE4198 YE4199 YE4199 pstA pstA 4598220 4598381 - gene gene4153 http://www.ncbi.nlm.nih.gov/gene/?term=YE4199 YE4199 YE4199 pstA pstA 4597494 4598381 - putative phosphate transport system permease gene gene4152 http://www.ncbi.nlm.nih.gov/gene/?term=YE4199 YE4200 YE4200 pstC pstC 4598383 4599339 - putative phosphate transport system permease gene gene4154 http://www.ncbi.nlm.nih.gov/gene/?term=YE4200 YE4201 YE4201 pstS pstS 4599524 4600564 - putative phosphate-binding periplasmic protein gene gene4155 http://www.ncbi.nlm.nih.gov/gene/?term=YE4201 YE4201 YE4201 pstS pstS 4600490 4600564 - gene gene4156 http://www.ncbi.nlm.nih.gov/gene/?term=YE4201 YE4202 YE4202 YE4202 4600837 4601199 + Hypothetical protein No significant database hits gene gene4157 http://www.ncbi.nlm.nih.gov/gene/?term=YE4202 YE4203 YE4203 glmS glmS 4601322 4603151 - glucosamine--fructose-6-phosphate aminotransferase gene gene4158 http://www.ncbi.nlm.nih.gov/gene/?term=YE4203 YE4204 YE4204 glmU glmU 4603358 4604728 - UDP-N-acetylglucosamine pyrophosphorylase gene gene4159 http://www.ncbi.nlm.nih.gov/gene/?term=YE4204 YE4205 YE4205 atpC atpC 4605243 4605665 - ATP synthase epsilon subunit protein gene gene4160 http://www.ncbi.nlm.nih.gov/gene/?term=YE4205 YE4206 YE4206 atpD atpD 4605687 4607069 - ATP synthase beta subunit protein gene gene4161 http://www.ncbi.nlm.nih.gov/gene/?term=YE4206 YE4207 YE4207 atpG atpG 4607226 4608089 - ATP synthase gamma subunit protein gene gene4162 http://www.ncbi.nlm.nih.gov/gene/?term=YE4207 YE4208 YE4208 atpA atpA 4608151 4609692 - ATP synthase alpha subunit protein gene gene4163 http://www.ncbi.nlm.nih.gov/gene/?term=YE4208 YE4209 YE4209 atpH atpH 4609707 4610240 - ATP synthase delta subunit protein gene gene4164 http://www.ncbi.nlm.nih.gov/gene/?term=YE4209 YE4210 YE4210 atpF atpF 4610255 4610725 - ATP synthase subunit B protein gene gene4165 http://www.ncbi.nlm.nih.gov/gene/?term=YE4210 YE4210 YE4210 atpF atpF 4610633 4610725 - gene gene4166 http://www.ncbi.nlm.nih.gov/gene/?term=YE4210 YE4211 YE4211 atpE atpE 4610786 4611025 - ATP synthase subunit C protein gene gene4167 http://www.ncbi.nlm.nih.gov/gene/?term=YE4211 YE4211 YE4211 atpE atpE 4610957 4611025 - gene gene4168 http://www.ncbi.nlm.nih.gov/gene/?term=YE4211 YE4212 YE4212 atpB atpB 4611200 4612024 - ATP synthase subunit B protein gene gene4169 http://www.ncbi.nlm.nih.gov/gene/?term=YE4212 YE4213 YE4213 atpI atpI 4612338 4612463 - gene gene4171 http://www.ncbi.nlm.nih.gov/gene/?term=YE4213 YE4213 YE4213 atpI atpI 4612080 4612463 - ATP synthase protein I gene gene4170 http://www.ncbi.nlm.nih.gov/gene/?term=YE4213 YE4214 YE4214 gidB gidB 4613131 4613751 - glucose inhibited division protein B gene gene4172 http://www.ncbi.nlm.nih.gov/gene/?term=YE4214 YE4215 YE4215 gidA gidA 4613899 4615788 - glucose inhibited division protein A gene gene4173 http://www.ncbi.nlm.nih.gov/gene/?term=YE4215 YEP0001 YEP0001 YEP0001 628 1287 + putative transposase Similar to several putative transposases including: Agrobacterium tumefaciens IS3 family transposase SWALL:Q8UDL7 (EMBL:AE009161) (512 aa) fasta scores: E(): 3.8e-24%2C 37.56 38d in 197 aa and to Escherichia coli%2C and Shigella flexneri possible transposase of IS1353 YahA SWALL:Q9WTH9 (EMBL:AP000342) (514 aa) fasta scores: E(): 9.4e-21%2C 36.5 38d in 200 aa gene gene4174 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0001 YEP0002 YEP0002 trp1400A trp1400A 1284 1571 - IS1400 transposase A Similar to Yersinia enterocolitica is1400 transposase a trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 4.6e-31%2C 96.84 38d in 95 aa%2C and to Escherichia coli O6 transposase c2472 SWALL:AAN80931 (EMBL:AE016762) (88 aa) fasta scores: E(): 5.6e-28%2C 93.18 id in 88 aa gene gene4175 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0002 YEP0003 YEP0003 YEP0003 1674 2108 + putative transposase Highly similar to Shigella flexneri 2a IS1353 putative transposase-like protein cp0118 SWALL:Q8VSI3 (EMBL:AF386526) (140 aa) fasta scores: E(): 2.3e-52%2C84.17 38d in 139 aa. Also similar to the C-termini of many other transposases including: Agrobacterium tumefaciens IS3 family transposase SWALL:Q8UDL7 (EMBL:AE009161) (512 aa) fasta scores: E(): 2.9e-43%2C 69.93 38d in 143 aa and Klebsiella pneumoniae IS1353 putative transposase SWALL:AAM89407 (EMBL:AY123253) (514 aa) fasta scores: E(): 2.9e-39%2C 63.38 38d in 142 aa gene gene4176 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0003 YEP0004 YEP0004 yopQ yopQ 2291 2839 - virulence plasmid protein Previously sequenced as Yersinia enterocolitica YopQ protein precursor or Yop20 SWALL:YOPQ_YEREN (SWALL:P27474) (182 aa) fasta scores: E(): 2.4e-72%2C 99.45 id in 182 aa%2C and to Yersinia enterocolitica YopQ SWALL:Q93KV1 (EMBL:AF336309) (182 aa) fasta scores: E(): 1.5e-72%2C 100 38d in 182 aa gene gene4177 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0004 YEP0005 YEP0005 yopT yopT 3352 4320 + plasmid type III secretion system effector protein Previously sequenced: Yersinia enterocolitica plasmid type III secretion system effector protein YopT or ypcd1.20 SWALL:Q93KV0 (EMBL:AF336309) (322 aa) fasta scores: E(): 8.1e-132%2C 100 38d in 322 aa gene gene4178 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0005 YEP0006 YEP0006 sycT sycT 4320 4712 + chaperone of YopT Previously sequenced as Yersinia enterocolitica YopT chaperone SycT SWALL:Q93KU9 (EMBL:AF336309) (130 aa) fasta scores: E(): 5.9e-53%2C 100 38d in 130 aa and to Yersinia pestis yopt chaperone syct or ypcd1.21 SWALL:Q9ZGW6 (EMBL:AF074612) (132 aa) fasta scores: E(): 1.3e-51%2C 97.72 38d in 132 aa gene gene4179 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0006 YEP0007 YEP0007 YEP0007 6065 6202 - putative exported protein Similar to the C-terminus of Yersinia pestis hypothetical protein Y0062 or Ypcd1.23 SWALL:Q9ZGW8 (EMBL:AF074612) (139 aa) fasta scores: E(): 1.6e-18%2C95.55 38d in 45 aa%2C and to Salmonella typhimurium lytic enzyme Stm1868A SWALL:Q8ZNX9 (EMBL:AE008783) (55 aa) fasta scores: E(): 0.00018%2C 41.86 38d in 43 aa gene gene4180 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0007 YEP0008 YEP0008 YEP0008 6479 6939 - putative transposase (remnant) This CDS appears to be a partial CDS with similarity to many transposases e.g. Yersinia intermedia transposase SWALL:O87921 (EMBL:Y18002) (245 aa) fasta scores: E(): 1e-48%2C 84.86 38d in 152 aa pseudogene gene4181 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0008 YEP0009 YEP0009 YEP0009 7364 7681 + putative transposase (remnant) Similar to many including the very N- and C-termini of Yersinia enterocolitica hypothetical 45.7 kDa protein SWALL:Q93KR3 (EMBL:AF336309) (400 aa) fasta scores: E(): 5.7e-26%2C 41.5 38d in 400 aa. Also similar in part to many proposed transposases including: Yersinia pestis putative transposase SWALL:O68702 (EMBL:AF053946) (99 aa) fasta scores: E(): 4.1e-33%2C 90.9 38d in 99 aa and to Yersinia pestis KIM putative transposase Y2038 SWALL:AAM85604 (EMBL:AE013806) (374 aa) fasta scores: E(): 1e-13%2C 44.44 38d in 99 aa. This CDS has undergone at least one deletion event and has a frameshift mutation following codon 89 pseudogene gene4182 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0009 YEP0010 YEP0010 yopM yopM 7724 8827 - yop type III secretion system effector protein Previously sequenced:Yersinia enterocolitica virulence plasmid type III secretion system effector protein YopM SWALL:Q93KU8 (EMBL:AF336309) (367 aa) fasta scores: E(): 3.9e-133%2C 100 38d in 367 aa and to Yersinia pestis outer membrane protein YopM or Yop48 or Ypcd1.26c or y0059 SWALL:YOPM_YERPE (SWALL:P17778) (409 aa) fasta scores: E(): 1.9e-78%2C 81.66 38d in 409 aa gene gene4183 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0010 YEP0011 YEP0011 YEP0011 8950 9168 + putative membrane protein Previously sequenced:Yersinia enterocolitica hypothetical 8.0 kDa protein orf91B SWALL:Q93KU7 (EMBL:AF336309) (72 aa) fasta scores: E(): 2.1e-29%2C 100 id in 72 aa. No other significant database hits gene gene4184 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0011 YEP0012 YEP0012 yopD yopD 9654 10574 - translocator protein Previously sequenced: Yersinia enterocolitica YopD translocator protein SWALL:YOPD_YEREN (SWALL:P37132) (306 aa) fasta scores: E(): 4e-96%2C 98.36 38d in 306 aa%2C and to Yersinia pestis YopD homolog or Ypcd1.28C SWALL:O68699 (EMBL:AF053946) (306 aa) fasta scores: E(): 2.8e-95%2C97.71 38d in 306 aa%2C and to Yersinia pseudotuberculosis YopD protein SWALL:YOPD_YERPS (SWALL:Q06131) (306 aa) fasta scores: E(): 5.3e-95%2C 97.38 38d in 306 aa%2C and to Pseudomonas aeruginosa translocator protein PopD popd or pa1709 SWALL:Q9I323 (EMBL:AE004597) (295 aa) fasta scores: E(): 2.2e-31%2C 40.76 38d in 287 aa gene gene4185 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0012 YEP0013 YEP0013 yopB yopB 10593 11798 - virulence plasmid YopB transmembrane effector protein Previously sequenced: Yersinia enterocolitica virulence plasmid YopB transmembrane protein SWALL:YOPB_YEREN (SWALL:P37131) (401 aa) fasta scores: E(): 2.2e-121%2C 98.75 38d in 401 aa%2C and to Yersinia pseudotuberculosis YopB protein yopB SWALL:YOPB_YERPS (SWALL:Q06114) (401 aa) fasta scores: E(): 1e-119%2C 96.5 id in 401 aa%2C and to Yersinia pestis yopb homolog yopb or ypcd1.29C SWALL:O68698 (EMBL:AF053946) (401 aa) fasta scores: E(): 1.9e-119%2C 96.25 38d in 401 aa gene gene4186 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0013 YEP0014 YEP0014 sycD sycD 11776 12282 - yopB/D chaperone/regulatory protein Previously sequenced: Yersinia enterocolitica yopB/D chaperone/regulatory protein SycD SWALL:AAK69212 (EMBL:AF336309) (168 aa) fasta scores: E(): 4.8e-67%2C 100 id in 168 aa. Also highly similar to Yersinia pseudotuberculosis low calcium response locus protein H LcrH SWALL:LCRH_YERPS (SWALL:P23995) (168 aa) fasta scores: E(): 4.8e-67%2C 100 38d in 168 aa%2C and to Yersinia pestis low calcium response locus protein H LcrH or Ypcd1.30c or y0051 SWALL:LCRH_YERPE (SWALL:P21207) (168 aa) fasta scores: E(): 2.6e-66%2C 99.4 38d in 168 aa gene gene4187 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0014 YEP0015 YEP0015 lcrV lcrV 12285 13259 - virulence-associated V antigen Previously sequenced: Yersinia enterocolitica virulence-associated V antigen LcrV SWALL:Q93KU4 (EMBL:AF336309) (324 aa) fasta scores: E(): 1.9e-111%2C 100 id in 324 aa. Also highly similar to Yersinia pseudotuberculosis virulence-associated V antigen LcrV SWALL:LCRV_YERPS (SWALL:P23994) (326 aa) fasta scores: E(): 2.5e-107%2C 96.28 38d in 323 aa and to Yersinia pestis virulence-associated V antigen LcrV or Ypcd1.31c or y0050 SWALL:LCRV_YERPE (SWALL:P21206) (326 aa) fasta scores: E(): 4.7e-106%2C 95.66 38d in 323 aa gene gene4188 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0015 YEP0016 YEP0016 lcrG lcrG 13261 13548 - low calcium response locus protein g Previously sequenced: Yersinia enterocolitica LcrG SWALL:Q93KU3 (EMBL:AF336309) (95 aa) fasta scores: E(): 5.2e-32%2C 100 38d in 95 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein G LcrG or Ypcd1.32c or Y0049 SWALL:LCRG_YERPE (SWALL:P19394) (95 aa) fasta scores: E(): 1.8e-31%2C 98.94 38d in 95 aa gene gene4189 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0016 YEP0017 YEP0017 lcrR lcrR 13590 14030 - low calcium response locus protein R Previously sequenced: Yersinia enterocolitica low calcium response locus protein R which may play an important role in its regulation%2C LcrR SWALL:LCRR_YEREN (SWALL:O68549) (146 aa) fasta scores: E(): 4e-62%2C 99.31 id in 146 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein R LcrR or Ypcd1.33c or Y0048 SWALL:LCRR_YERPE (SWALL:P19393) (146 aa) fasta scores: E(): 1.3e-61%2C 98.63 id in 146 aa gene gene4190 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0017 YEP0018 YEP0018 lcrD lcrD 14027 16141 - low calcium response locus membrane protein d Previously sequenced: Yersinia enterocolitica low calcium response locus integral membrane protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 0%2C 99.57 38d in 704 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis low calcium response locus protein D LcrD or Ypcd1.34c or Y0047 SWALL:LCRD_YERPE (SWALL:P31487) (704 aa) fasta scores: E(): 0%2C 99 38d in 704 aa gene gene4191 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0018 YEP0019 YEP0019 yscY yscY 16128 16472 - conserved hypothetical protein Previously sequenced: Yersinia enterocolitica YscY SWALL:Q93KU0 (EMBL:AF336309) (114 aa) fasta scores: E(): 9.5e-49%2C 100 38d in 114 aa. Also highly similar to Yersinia pestis hypothetical protein Ypcd1.35c or Y0046 SWALL:Y6D5_YERPE (SWALL:P21209) (114 aa) fasta scores: E(): 7.9e-48%2C 99.11 38d in 113 aa gene gene4192 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0019 YEP0020 YEP0020 yscX yscX 16469 16837 - conserved hypothetical protein Previously sequenced: Yersinia enterocolitica hypothetical protein SWALL:YLC3_YEREN (SWALL:P21208) (122 aa) fasta scores: E(): 1.8e-46%2C 99.18 38d in 122 aa. Also highly similar to Y. ersinia pestis and Y. enterocolitica hypothetical 13.8 kDa protein Y0045 or Ypcd1.36c or YscX SWALL:O68696 (EMBL:AF053946) (122 aa) fasta scores: E(): 9.9e-47%2C 100 38d in 122 aa gene gene4193 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0020 YEP0021 YEP0021 sycN sycN 16834 17205 - YopN chaperone SycN Previously sequenced: Yersinia enterocolitica YopN chaperone SycN SWALL:Q93KT9 (EMBL:AF336309) (123 aa) fasta scores: E(): 1.6e-48%2C 100 38d in 123 aa. Also highly similar to Yersinia pestis and Yersinia pseudotuberculosis hypothetical protein Ypcd1.37c or Y0044 SWALL:Y6D7_YERPE (SWALL:P16162) (123 aa) fasta scores: E(): 3.6e-48%2C 99.18 id in 123 aa gene gene4194 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0021 YEP0022 YEP0022 tyeA tyeA 17192 17470 - type III secretion system protein Previously sequenced: Yersinia enterocolitica TyeA SWALL:AAK69221 (EMBL:AF336309) (92 aa) fasta scores: E(): 9.8e-35%2C 100 38d in 92 aa. Also highly similar to Yersinia pestis%2C Yersinia enterocolitica%2C and Yersinia pseudotuberculosis protein TyeA or Ypcd1.38c or Y0043 SWALL:TYEA_YERPE (SWALL:P16161) (92 aa) fasta scores: E(): 9.8e-35%2C 100 38d in 92 aa gene gene4195 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0022 YEP0023 YEP0023 yopN yopN 17451 18332 - type III secretion outer membrane protein Previously sequenced: Yersinia enterocolitica plasmid type III secretion system outer membrane protein YopN or LcrE SWALL:YOPN_YEREN (SWALL:P16945) (292 aa) fasta scores: E(): 7.8e-96%2C 95.54 38d in 292 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis outer membrane protein YopN or LcrE or Ypcd1.39c or y0042 SWALL:YOPN_YERPE (SWALL:P16160) (292 aa) fasta scores: E(): 6.3e-99%2C 97.6 38d in 292 aa gene gene4196 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0023 YEP0024 YEP0024 yscN yscN 18530 19849 + probable type III secretion system ATP synthase Previously sequenced: Yersinia enterocolitica probable ATP synthase YscN SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): 8e-158%2C 99.76 38d in 427 aa. Also highly similar to Yersinia pestis%2C and Yersinia enterocolitica Yops secretion ATPase YscN or Ypcd1.40 SWALL:O68695 (EMBL:AF053946) (439 aa) fasta scores: E(): 4e-158%2C 100 38d in 427 aa%2C and to Yersinia pseudotuberculosis probable ATP synthase YscN SWALL:YSCN_YERPS (SWALL:P40291) (439 aa) fasta scores: E(): 1.2e-156%2C 99.29 38d in 427 aa%2C and to Pseudomonas aeruginosa ATP synthase in type III secretion system Pa1697 SWALL:Q9I330 (EMBL:AE004596) (440 aa) fasta scores: E(): 1.3e-130%2C 84.89 38d in 417 aa gene gene4197 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0024 YEP0025 YEP0025 yscO yscO 19846 20310 + type III secretion system translocation protein Similar to Yersinia enterocolitica type III secretion system translocation protein YscO SWALL:Q93KT7 (EMBL:AF336309) (154 aa) fasta scores: E(): 9.7e-51%2C 100 id in 154 aa%2C and to Yersinia pseudotuberculosis Yop proteins translocation protein O YscO SWALL:YSCO_YERPS (SWALL:P40294) (154 aa) fasta scores: E(): 3.1e-49%2C 96.75 id in 154 aa gene gene4198 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0025 YEP0026 YEP0026 yscP yscP 20310 21671 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscP SWALL:Q93KT6 (EMBL:AF336309) (453 aa) fasta scores: E(): 1.8e-171%2C 100 38d in 453 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis Yop proteins translocation protein P YscP or Ypcd1.42 or Y0039 SWALL:YSCP_YERPE (SWALL:P40295) (455 aa) fasta scores: E(): 2.2e-159%2C 93.84 38d in 455 aa gene gene4199 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0026 YEP0027 YEP0027 yscQ yscQ 21668 22591 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscQ SWALL:Q9ZA78 (EMBL:AF102990) (307 aa) fasta scores: E(): 2.9e-123%2C 100 38d in 307 aa. Also highly similar to Yersinia pseudotuberculosis Yop proteins translocation protein Q YscQ SWALL:YSCQ_YERPS (SWALL:P40296) (307 aa) fasta scores: E(): 2.5e-121%2C 98.69 38d in 307 aa%2C and to Yersinia pestis Yop proteins translocation protein Q YscQ or ypcd1.43 or y0038 SWALL:YSCQ_YERPE (SWALL:P42713) (307 aa) fasta scores: E(): 9.4e-121%2C 98.04 38d in 307 aa gene gene4200 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0027 YEP0028 YEP0028 yscR yscR 22588 23241 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscR SWALL:Q9ZA77 (EMBL:AF102990) (217 aa) fasta scores: E(): 1.6e-80%2C 100 38d in 217 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis Yop proteins translocation protein R YscR or Ypcd1.44 or Y0037 SWALL:YSCR_YERPE (SWALL:P40297) (217 aa) fasta scores: E(): 2.1e-80%2C 99.07 38d in 217 aa%2C and to Pseudomonas aeruginosa translocation protein in type III secretion PscR or pa1693 SWALL:Q9I334 (EMBL:AE004596) (217 aa) fasta scores: E(): 5.2e-66%2C 79.26 38d in 217 aa gene gene4201 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0028 YEP0029 YEP0029 yscS yscS 23243 23509 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscS SWALL:AAD16829 (EMBL:AF102990) (88 aa) fasta scores: E(): 1.5e-30%2C 100 38d in 88 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein S YscS or ypcd1.45 or y0036 SWALL:YSCS_YERPE (SWALL:P40298) (88 aa) fasta scores: E(): 1.5e-30%2C 100 38d in 88 aa%2C and to Pseudomonas aeruginosa probable translocation protein in type III secretion Pa1692 SWALL:Q9I335 (EMBL:AE004596) (88 aa) fasta scores: E(): 3.6e-23%2C 75 38d in 88 aa gene gene4202 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0029 YEP0030 YEP0030 yscT yscT 23506 24291 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscT SWALL:Q93KT5 (EMBL:AF336309) (261 aa) fasta scores: E(): 3e-95%2C 100 38d in 261 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein T YscT or Ypcd1.46 or Y0035 SWALL:YSCT_YERPE (SWALL:P40299) (261 aa) fasta scores: E(): 5.2e-94%2C 98.85 38d in 261 aa%2C and to Pseudomonas aeruginosa translocation protein in type III secretion PscT or Pa1691 SWALL:Q9I336 (EMBL:AE004596) (262 aa) fasta scores: E(): 1.9e-65%2C 68.34 38d in 259 aa gene gene4203 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0030 YEP0031 YEP0031 yscU yscU 24291 25355 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica YscU SWALL:Q93KT4 (EMBL:AF336309) (354 aa) fasta scores: E(): 2.5e-130%2C 100 38d in 354 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein U YscU or Ypcd1.47 or Y0034 SWALL:YSCU_YERPE (SWALL:P40300) (354 aa) fasta scores: E(): 3.6e-129%2C 99.15 38d in 354 aa%2C and to Pseudomonas aeruginosa translocation protein in type iii secretion pscu or pa1690 SWALL:Q9I337 (EMBL:AE004596) (349 aa) fasta scores: E(): 6.3e-91%2C 66.85 38d in 347 aa gene gene4204 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0031 YEP0033 YEP0033 virG virG 25931 26326 + putative type III secretion effector targeting lipoprotein Previously sequenced: Yersinia enterocolitica lipoprotein VirG SWALL:Q56851 (EMBL:AF102990) (131 aa) fasta scores: E(): 3e-51%2C 100 38d in 131 aa. Also highly similar to Yersinia pestis pre-lipoprotein VirG or YscW or Ypcd1.48 SWALL:O68694 (EMBL:AF053946) (131 aa) fasta scores: E(): 3.2e-49%2C 96.18 38d in 131 aa%2C and to Pseudomonas aeruginosa exoenzyme S synthesis protein B ExsB or Pa1712 SWALL:EXSB_PSEAE (SWALL:P26994) (137 aa) fasta scores: E(): 3.1e-06%2C 29.54 38d in 132 aa gene gene4205 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0033 YEP0035 YEP0035 virF virF 26450 27265 + virulence regulon transcriptional activator Previously sequenced: Yersinia enterocolitica virulence regulon transcriptional activator VirF SWALL:VIRF_YEREN (SWALL:P13225) (271 aa) fasta scores: E(): 9.7e-110%2C 98.52 38d in 271 aa. Also highly similar to Yersinia pestis thermoregulatory protein LcrF or ypcd1.49 or y0032 SWALL:LCRF_YERPE (SWALL:P28808) (271 aa) fasta scores: E(): 1.3e-108%2C 97.78 38d in 271 aa and to Pseudomonas aeruginosa exoenzyme S synthesis regulatory protein ExsA or pa1713 SWALL:EXSA_PSEAE (SWALL:P26993) (278 aa) fasta scores: E(): 1.3e-57%2C 57.41 38d in 263 aa gene gene4206 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0035 YEP0036 YEP0036 yscA yscA 27345 27443 + conserved hypothetical hydrophobic protein doubtful CDS. Previously sequenced: Yersinia enterocolitica yop proteins translocation protein A YscA SWALL:YSCA_YEREN (SWALL:Q01242) (32 aa) fasta scores: E(): 9.5e-14%2C 100 38d in 32 aa gene gene4207 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0036 YEP0037 YEP0037 yscB yscB 27668 28081 + conserved hypothetical protein Previously sequenced: Yersinia enterocolitica YscB SWALL:Q93KT2 (EMBL:AF336309) (137 aa) fasta scores: E(): 1.5e-52%2C 100 38d in 137 aa. Also highly similar to Yersinia pestis KIM5 YscB or Ypcd1.51 SWALL:Q56973 (EMBL:M83225) (137 aa) fasta scores: E(): 1.7e-51%2C 97.81 id in 137 aa%2C and to Pseudomonas aeruginosa PscB SWALL:P95430 (EMBL:U56077) (140 aa) fasta scores: E(): 8.4e-16%2C 43.41 38d in 129 aa gene gene4208 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0037 YEP0038 YEP0038 yscC yscC 28087 29910 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica yop proteins translocation protein C precursor YscC SWALL:YSCC_YEREN (SWALL:Q01244) (607 aa) fasta scores: E(): 0%2C 99.17 38d in 607 aa. Also highly similar to Yersinia pestis KIM5 or Yscc or Ypcd1.52 SWALL:Q56974 (EMBL:M83225) (607 aa) fasta scores: E(): 0%2C 98.35 38d in 607 aa%2C and to Pseudomonas aeruginosa type III secretion protein PscC or pa1716 SWALL:Q9I319 (EMBL:AE004598) (600 aa) fasta scores: E(): 2.2e-146%2C 62.74 38d in 604 aa gene gene4209 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0038 YEP0039 YEP0039 yscD yscD 29907 31163 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica yop proteins translocation protein D YscD SWALL:YSCD_YEREN (SWALL:Q01245) (418 aa) fasta scores: E(): 5.1e-158%2C99.04 38d in 418 aa. Also highly similar to Yersinia pestis kim5 YscD or Ypcd1.53 SWALL:Q56975 (EMBL:M83225) (419 aa) fasta scores: E(): 1.1e-156%2C 98.56 38d in 419 aa and to Pseudomonas aeruginosa PscD SWALL:P95432 (EMBL:U56077) (432 aa) fasta scores: E(): 1.5e-59%2C 44.41 id in 421 aa gene gene4210 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0039 YEP0040 YEP0040 yscE yscE 31160 31363 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica putative yop proteins translocation protein E YscE SWALL:YSCE_YEREN (SWALL:Q01246) (66 aa) fasta scores: E(): 3.3e-23%2C 96.97 38d in 66 aa. Also highly similar to Yersinia pestis yop proteins translocation protein E homolog YscE or Ypcd1.54 SWALL:O68692 (EMBL:AF053946) (66 aa) fasta scores: E(): 7.7e-23%2C 93.93 38d in 66 aa%2C and to Pseudomonas aeruginosa PscE SWALL:P95433 (EMBL:U56077) (67 aa) fasta scores: E(): 0.091%2C 27.27 38d in 66 aa gene gene4211 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0040 YEP0041 YEP0041 yscF yscF 31360 31623 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica yop proteins translocation protein F YscF SWALL:YSCF_YEREN (SWALL:Q01247) (87 aa) fasta scores: E(): 1.1e-27%2C 94.25 id in 87 aa. Also highly similar to Yersinia pestis yop proteins translocation protein F homolog YscF or ypcd1.55 SWALL:O68691 (EMBL:AF053946) (87 aa) fasta scores: E(): 2.4e-27%2C 93.1 38d in 87 aa%2C and to Pseudomonas aeruginosa PscF or pa1719 SWALL:P95434 (EMBL:U56077) (85 aa) fasta scores: E(): 2.7e-13%2C 68.05 38d in 72 aa gene gene4212 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0041 YEP0042 YEP0042 yscG yscG 31625 31972 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica putative yop proteins translocation protein G YscG SWALL:YSCG_YEREN (SWALL:Q01248) (115 aa) fasta scores: E(): 3.7e-45%2C 96.52 38d in 115 aa. Also highly similar to Yersinia pestis yop proteins translocation protein G homolog YscG or Ypcd1.56 SWALL:O68690 (EMBL:AF053946) (115 aa) fasta scores: E(): 3.5e-44%2C 96.52 38d in 115 aa%2C and to Pseudomonas aeruginosa PscG or Pa1720 SWALL:P95435 (EMBL:U56077) (115 aa) fasta scores: E(): 4.5e-21%2C 55.14 id in 107 aa gene gene4213 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0042 YEP0043 YEP0043 yscH yscH 31969 32466 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica yop proteins translocation protein H YscH SWALL:YSCH_YEREN (SWALL:Q01249) (165 aa) fasta scores: E(): 8.6e-58%2C 98.18 id in 165 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein H YscH or lcrp or ypcd1.57 or y0024 SWALL:YSCH_YERPE (SWALL:Q00929) (165 aa) fasta scores: E(): 5.7e-56%2C 96.97 38d in 165 aa%2C and to Pseudomonas aeruginosa type III export protein PscH or Pa1721 SWALL:Q9I316 (EMBL:AE004598) (143 aa) fasta scores: E(): 0.0003%2C 36.55 38d in 93 aa gene gene4214 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0043 YEP0044 YEP0044 yscI yscI 32467 32814 + putative type III secretion protein Previously sequenced: Yersinia enterocolitica yop proteins translocation protein I YscI SWALL:YSCI_YEREN (SWALL:Q01250) (115 aa) fasta scores: E(): 2e-40%2C 99.13 id in 115 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein I YscI or lcro or ypcd1.58 or y0023 SWALL:YSCI_YERPE (SWALL:Q00933) (115 aa) fasta scores: E(): 2.6e-39%2C 95.65 38d in 115 aa%2C and to Pseudomonas aeruginosa type III export protein PscI or pa1722 SWALL:Q9I315 (EMBL:AE004598) (112 aa) fasta scores: E(): 5e-13%2C 50.46 38d in 107 aa gene gene4215 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0044 YEP0045 YEP0045 yscJ yscJ 32821 33555 + type III secretion lipoprotein Previously sequenced: Yersinia enterocolitica yop proteins translocation lipoprotein J precursor YscJ or YlpB SWALL:YSCJ_YEREN (SWALL:Q01251) (244 aa) fasta scores: E(): 4.9e-87%2C 100 38d in 244 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation lipoprotein J precursor YscJ or YlpB or LcrkA or Ypcd1.59 or y0022 SWALL:YSCJ_YERPE (SWALL:Q00926) (244 aa) fasta scores: E(): 1.3e-86%2C 99.59 38d in 244 aa%2C and to Pseudomonas aeruginosa type iii export protein PscJ or pa1723 SWALL:Q9I314 (EMBL:AE004598) (248 aa) fasta scores: E(): 1.5e-62%2C 71.54 38d in 239 aa gene gene4216 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0045 YEP0046 YEP0046 yscK yscK 33555 34184 + type III secretion protein Previously sequenced:Yersinia enterocolitica yop proteins translocation protein K YscK SWALL:YSCK_YEREN (SWALL:Q01252) (209 aa) fasta scores: E(): 2.7e-86%2C 99.52 id in 209 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein k ysck or lcrkb or ypcd1.60 or y0021 SWALL:YSCK_YERPE (SWALL:Q00927) (209 aa) fasta scores: E(): 2.4e-86%2C 99.52 38d in 209 aa%2C and to Pseudomonas aeruginosa type iii export protein PscK or Pa1724 SWALL:Q9I313 (EMBL:AE004598) (208 aa) fasta scores: E(): 4.6e-27%2C 40.97 38d in 205 aa gene gene4217 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0046 YEP0047 YEP0047 yscL yscL 34130 34801 + putative type III secretion protein Previously sequenced as: Yersinia enterocolitica yop proteins translocation protein L YscL SWALL:YSCL_YEREN (SWALL:Q01253) (223 aa) fasta scores: E(): 5.2e-75%2C 98.65 id in 223 aa. Also highly similar to Pseudomonas aeruginosa type III export protein PscL or pa1725 SWALL:Q9I312 (EMBL:AE004598) (214 aa) fasta scores: E(): 1.4e-38%2C 56.58 38d in 205 aa gene gene4218 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0047 YEP0048 YEP0048 yscM yscM 35020 35367 + putative type III secretion regulatory protein Previously sequenced as: Yersinia enterocolitica yop proteins translocation protein M YscM SWALL:YSCM_YEREN (SWALL:Q01254) (115 aa) fasta scores: E(): 1.8e-41%2C 100 id in 115 aa%2C and to Yersinia pestis%2C and Yersinia pseudotuberculosis yop proteins translocation protein m yscm or lcrq or ypcd1.62 or y0019 SWALL:YSCM_YERPE (SWALL:Q00930) (115 aa) fasta scores: E(): 3.3e-41%2C 99.13 id in 115 aa gene gene4219 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0048 YEP0049 YEP0049 YEP0049 35593 35760 + hypothetical protein doubtful CDS with no significant database hits gene gene4220 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0049 YEP0050 YEP0050 YEP0050 36049 37455 + putative protein-tyrosine phosphatase Yop effector gene gene4221 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0050 YEP0051 YEP0051 YEP0051 37677 38108 - putative yopH targeting protein gene gene4222 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0051 YEP0052 YEP0052 YEP0052 38462 38854 - putative YopE chaperone gene gene4223 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0052 YEP0053 YEP0053 YEP0053 39047 39706 + putative outer membrane virulence protein gene gene4224 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0053 YEP0054 YEP0054 YEP0054 39747 40172 - putative transposase for insertion element IS1669 (remnant) Similar to parts of many transposases including: Yersinia pestis putative integrase core domain protein ypo2009 SWALL:Q8ZEY7 (EMBL:AJ414151) (169 aa) fasta scores: E(): 1.9e-51%2C 92.9 38d in 141 aa and to Porphyromonas gingivalis transposase SWALL:Q9L796 (EMBL:AF224744) (312 aa) fasta scores: E(): 8e-13%2C 41.54 id in 142 aa%2C and to Corynebacterium diphtheriae transposase subunit b tnpB SWALL:Q8RMK1 (EMBL:AF492560) (306 aa) fasta scores: E(): 1.5e-12%2C 39.16 38d in 143 aa. Note this CDS appears to be a gene remnant lacking its 5' end pseudogene gene4225 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0054 YEP0055 YEP0055 YEP0055 40240 40794 - conserved hypothetical protein (remnant) Similar to the very C-termini of many putative reverse transcriptase-like proteins including: Escherichia coli Orf59 protein SWALL:Q9S109 (EMBL:AB024946) (502 aa) fasta scores: E(): 2.4e-73%2C 93.47 38d in 184 aa and Shigella flexneri reverse transcriptase-like protein SfiA SWALL:O34211 (EMBL:U97489) (431 aa) fasta scores: E(): 1.4e-36%2C 94.11 38d in 102 aa. Note this CDS appears to be a gene remnant lacking it 5' end. pseudogene gene4226 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0055 YEP0056 YEP0056 YEP0056 40794 40943 - IS1669 conserved hypothetical protein (remnant) Similar to the very C-termini of many including: Salmonella typhimurium putative cytoplasmic protein Stm0948 SWALL:Q8ZQE1 (EMBL:AE008740) (133 aa) fasta scores: E(): 7.9e-15%2C 82 38d in 50 aa%2C Shewanella oneidensis hypothetical protein Soa0117 SWALL:AAN53040 (EMBL:AE015918) (80 aa) fasta scores: E(): 4.5e-10%2C 64 38d in 50 aa and to Vibrio cholerae transposase subunit A vc1477 SWALL:Q9KS05 (EMBL:AE004225) (117 aa) fasta scores: E(): 2.3%2C 30 38d in 50 aa pseudogene gene4227 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0056 YEP0057 YEP0057 YEP0057 41132 41434 - conserved hypothetical protein Previously sequenced as: Yersinia enterocolitica hypothetical 11.8 kDa protein SWALL:Q93KR9 (EMBL:AF336309) (100 aa) fasta scores: E(): 1.7e-40%2C 100 38d in 100 aa. Also highly similar to Yersinia pestis hypothetical protein y0075 or ypcd1.08C SWALL:Q9ZGW2 (EMBL:AF074612) (99 aa) fasta scores: E(): 3.2e-38%2C 95.96 38d in 99 aa and to Escherichia coli O157:H7 hypothetical protein z0510 z0510 or ecs0462 SWALL:Q8XE95 (EMBL:AE005220) (93 aa) fasta scores: E(): 5.8e-07%2C 35.95 38d in 89 aa gene gene4228 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0057 YEP0058 YEP0058 YEP0058 41427 41669 - conserved hypothetical protein Previously sequenced as: Yersinia enterocolitica hypothetical 8.9 kDa protein SWALL:Y6A9_YEREN (SWALL:O85269) (80 aa) fasta scores: E(): 1.8e-28%2C 100 38d in 80 aa. Also highly similar to Yersinia pestis hypothetical protein ypcd1.09c or y0074 SWALL:Y6A9_YERPE (SWALL:Q9ZGW3) (80 aa) fasta scores: E(): 1.2e-27%2C 97.5 id in 80 aa and to Vibrio cholerae hypothetical protein Vca0360.1 SWALL:YV6A_VIBCH (SWALL:P58093) (80 aa) fasta scores: E(): 1.2e-08%2C 54.38 38d in 57 aa gene gene4229 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0058 YEP0059 YEP0059 YEP0059 41813 42133 - putative transposase (remnant) Similar in parts to many putative transposases including: Yersinia pestis Ypcd1.10C protein SWALL:Q9RI25 (EMBL:AL117189) (83 aa) fasta scores: E(): 3.2e-33%2C 92.77 id in 83 aa%2C Pantoea agglomerans IS1327 transposase TnpA SWALL:P94785 (EMBL:X87144) (234 aa) fasta scores: E(): 2.4e-22%2C 66.66 38d in 90 aa and to Xylella fastidiosa transposase xf2303 SWALL:Q9PB42 (EMBL:AE004042) (188 aa) fasta scores: E(): 9.5e-20%2C 63.95 38d in 86 aa pseudogene gene4230 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0059 YEP0061 YEP0061 YEP0061 42931 43893 - putative plasmid partitioning control protein gene gene4231 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0061 YEP0062 YEP0062 YEP0062 43893 45059 - putative plasmid partitioning transcription repressor gene gene4232 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0062 YEP0063 YEP0063 YEP0063 45373 45588 - conserved hypothetical protein Similar to Yersinia enterocolitica hypothetical 7.7 kDa protein SWALL:Q93KR6 (EMBL:AF336309) (71 aa) fasta scores: E(): 4.5e-26%2C 97.18 38d in 71 aa gene gene4233 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0063 YEP0064 YEP0064 YEP0064 45764 45856 - putative transposase (remnant) Similar to the N-terminus of many transposases e.g. Desulfovibrio vulgaris transposase OrfA SWALL:O31217 (EMBL:AF034211) (88 aa) fasta scores: E(): 7.1e-06%2C 61.29 id in 31 aa. This CDS appears to be a gene remnant pseudogene gene4234 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0064 YEP0065 YEP0065 yomA yomA 46109 46984 - putative exported protein Previously sequenced as: Yersinia enterocolitica YomA SWALL:Q93KR5 (EMBL:AF336309) (291 aa) fasta scores: E(): 7.8e-105%2C 100 38d in 291 aa. Also highly similar to Salmonella typhimurium integral membrane protein PagO or stm1862 SWALL:PAGO_SALTY (SWALL:O30646) (304 aa) fasta scores: E(): 1.7e-62%2C 57.39 38d in 284 aa gene gene4235 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0065 YEP0066 YEP0066 YEP0066 47054 48322 - putative YadA invasin gene gene4236 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0066 YEP0067 YEP0067 trp1400A trp1400A 48906 48923 + IS1400 transposase A (remnant) Similar to the very N-terminus of Yersinia enterocolitica IS1400 transposase A trp1400A SWALL:Q9X9H8 (EMBL:AJ132945) (96 aa) fasta scores: E(): 0.0089%2C 61.11 id in 18 aa%2C and to Escherichia coli O6 transposase c2472 SWALL:AAN80931 (EMBL:AE016762) (88 aa) fasta scores: E(): 0.052%2C 81.81 38d in 11 aa pseudogene gene4237 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0067 YEP0068 YEP0068 trp1400B trp1400B 49321 49479 + putative IS1400 transposase B (remnant) Similar in parts to many transposases including: Yersinia enterocolitica IS1400 transposase B trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 9.1e-20%2C 76.04 38d in 192 aa and to Xanthomonas campestris ISxcc1 transposase xcc3124 or xcc3135 SWALL:Q8NL31 (EMBL:AE012428) (255 aa) fasta scores: E(): 3.4e-14%2C56.18 38d in 194 aa. Note this CDS appears to be a gene remnant that has undergone a series of deletion events pseudogene gene4238 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0068 YEP0069 YEP0069 YEP0069 49605 50807 + transposase Highly similar to Shewanella oneidensis ISsod4%2Ctransposase so2292 SWALL:AAN55332 (EMBL:AE015670) (400 aa) fasta scores: E(): 1.5e-123%2C 75.25 38d in 400 aa%2C and to Yersinia enterocolitica hypothetical 45.7 kDa protein tnP SWALL:Q93KR3 (EMBL:AF336309) (400 aa) fasta scores: E(): 4.1e-156%2C 99.75 38d in 400 aa gene gene4239 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0069 YEP0071 YEP0071 YEP0071 50937 51245 - hypothetical protein Previously sequenced as: Yersinia enterocolitica hypothetical 11.4 kDa protein SWALL:Q93KR2 (EMBL:AF336309) (102 aa) fasta scores: E(): 1.9e-34%2C 100 38d in 102 aa gene gene4240 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0071 YEP0072 YEP0072 YEP0072 51245 51874 - conserved hypothetical protein Previously sequenced as: Yersinia enterocolitica hypothetical 22.3 kDa protein SWALL:Q93KR1 (EMBL:AF336309) (209 aa) fasta scores: E(): 9.8e-72%2C 100 38d in 209 aa. Also similar to several plasmid partition proteins including: Xanthomonas axonopodis partition protein A ParA SWALL:Q8NKZ8 (EMBL:AE008924) (208 aa) fasta scores: E(): 2.9e-06%2C 31.28 38d in 195 aa and to Agrobacterium tumefaciens ParA protein SWALL:PARA_AGRTU (SWALL:P07175) (222 aa) fasta scores: E(): 0.099%2C 25.98 38d in 204 aa gene gene4241 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0072 YEP0073 YEP0073 YEP0073 52049 52783 - putative resolvase/recombinase Similar to many site-specific recombinases including: Escherichia coli resolvase ResD SWALL:REDF_ECOLI (SWALL:P06615) (268 aa) fasta scores: E(): 2.6e-17%2C 47.24 38d in 254 aa%2C Yersinia enterocolitica hypothetical 27.8 kDa protein SWALL:Q93KR0 (EMBL:AF336309) (244 aa) fasta scores: E(): 1.1e-98%2C 100 38d in 244 aa and Escherichia coli probable site-specific recombinase IntM or inT SWALL:INTM_ECOLI (SWALL:P56979) (246 aa) fasta scores: E(): 9.3e-44%2C 50.4 38d in 248 aa gene gene4242 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0073 YEP0074 YEP0074 YEP0074 52920 53117 - hypothetical protein Previously sequenced as: Yersinia enterocolitica hypothetical 7.4 kDa protein SWALL:Q93KQ9 (EMBL:AF336309) (65 aa) fasta scores: E(): 5.4e-28%2C 100 38d in 65 aa gene gene4243 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0074 YEP0075 YEP0075 YEP0075 53569 54147 + Putative transposase (remnant) Similar in parts to many transposases including: Yersinia enterocolitica IS1400 transposase B trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 1.4e-48%2C 65.44 38d in 191 aa%2C and to Xanthomonas campestris isxcc1 transposase xcc1607 SWALL:Q8PA81 (EMBL:AE012262) (255 aa) fasta scores: E(): 5.9e-47%2C63.29 38d in 188 aa. Note this CDS appears to be a gene remnant pseudogene gene4244 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0075 YEP0076 YEP0076 YEP0076 54207 54509 - transposase for insertion sequence element IS1328 (remnant) Highly similar to the very N-terminus of Shigella flexneri 2a IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 1.2e-30%2C 79.2 id in 101 aa. Previously sequenced as Yersinia enterocolitica IS1328 transposase trp1328 SWALL:Q9RIG6 (EMBL:AJ132945) (334 aa) fasta scores: E(): 1.4e-30%2C 77 id in 100 aa pseudogene gene4245 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0076 YEP0078 YEP0078 YEP0078 54959 55135 - putative transposase (remnant) Highly similar to the N-terminal regions of many transposases including: Xanthomonas axonopodis ISxac3 transposase SWALL:Q8NKZ0 (EMBL:AE011632) (90 aa) fasta scores: E(): 2.2e-05%2C 57.14 38d in 42 aa and to Pantoea agglomerans putative transposase A SWALL:Q9AM90 (EMBL:AF327445) (94 aa) fasta scores: E(): 0.006%2C 40.42 id in 47 aa.Previously sequenced as: Yersinia enterocolitica hypothetical 10.1 kDa protein Orf86 SWALL:Q93KQ8 (EMBL:AF336309) (88 aa) fasta scores: E(): 3.4e-35%2C 100 38d in 88 aa. pseudogene gene4246 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0078 YEP0080 YEP0080 YEP0080 55297 55728 + conserved hypothetical protein gene gene4247 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0080 YEP0081 YEP0081 yopO yopO 55746 57935 + putative targeted effector protein kinase Highly similar to Yersinia pseudotuberculosis effector protein kinase YpkA precursor SWALL:YPKA_YERPS (SWALL:Q05608) (732 aa) fasta scores: E(): 0%2C 96.98 38d in 729 aa and to Yersinia enterocolitica protein kinase YopO SWALL:Q93KQ6 (EMBL:AF336309) (729 aa) fasta scores: E(): 0%2C 100 38d in 729 aa gene gene4248 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0081 YEP0082 YEP0082 YEP0082 58175 58301 + hypothetical 10.2 kDa protein Highly similar to the C-terminus of Yersinia enterocolitica hypothetical 10.2 kDa protein SWALL:O85240 (EMBL:AF102990) (91 aa) fasta scores: E(): 2e-16%2C 97.5 38d in 40 aa. Note this CDS appears to be a gene remnant%3B~hypothetical protein (remnant) pseudogene gene4249 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0082 YEP0083 YEP0083 yopJ yopJ 58302 59168 + putative targeted effector protein Similar to Yersinia pseudotuberculosis YopJ type III secretion system effector protein SWALL:YOPJ_YERPS (SWALL:P31498) (264 aa) fasta scores: E(): 2.6e-88%2C 92 38d in 250 aa%2C and to Yersinia enterocolitica Yop effector YopP SWALL:Q93KQ5 (EMBL:AF336309) (288 aa) fasta scores: E(): 7.4e-112%2C 100 38d in 288 aa gene gene4250 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0083 YEP0084 YEP0084 YEP0084 59262 59393 + mobilization protein (remnant) Similar to the very C-termini of: Escherichia coli mobilization protein MbeA SWALL:MBEA_ECOLI (SWALL:P13658) (517 aa) fasta scores: E(): 1.4e-08%2C 83.72 38d in 43 aa%2CEscherichia coli MobA SWALL:Q9F899 (EMBL:AF251289) (517 aa) fasta scores: E(): 2.7e-09%2C 86.04 38d in 43 aa and Salmonella cholerae-suis mobilization protein MobA SWALL:Q93LC3 (EMBL:AY048853) (517 aa) fasta scores: E(): 2.7e-09%2C 86.04 38d in 43 aa pseudogene gene4251 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0084 YEP0086 YEP0086 yscM2 yscM2 59787 60137 + regulatory protein Previously sequenced as: Yersinia enterocolitica regulatory protein Yscm2 SWALL:Q93KQ4 (EMBL:AF336309) (116 aa) fasta scores: E(): 4.9e-40%2C 100 38d in 116 aa. Also highly similar to Yersinia pestis%2C and Yersinia pseudotuberculosis Yop proteins translocation protein M YscM or LcrQ or ypcd1.62 or y0019 SWALL:YSCM_YERPE (SWALL:Q00930) (115 aa) fasta scores: E(): 1.2e-17%2C 59.09 id in 110 aa gene gene4252 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0086 YEP0087 YEP0087 tnpA tnpA 60325 61009 + transposase for transposon Tn3 (remnant) Similar to many transposases including: Escherichia coli transposase for transposon Tn3 TnpA SWALL:TNP3_ECOLI (SWALL:P03008) (1015 aa) fasta scores: E(): 2e-88%2C 95.69 id in 232 aa and Klebsiella pneumoniae transposase tnpA SWALL:Q8RNS1 (EMBL:AF479774) (1001 aa) fasta scores: E(): 1.7e-89%2C 96.94 38d in 229 aa. Note this CDS has undergone several rounds of deletion and framshift mutations. pseudogene gene4253 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0087 YEP0088 YEP0088 YEP0088 61007 61570 - transposase (remnant) Similar to the N-terminus of many transposases including: Shewanella oneidensis ISsod4%2C transposase so2292 SWALL:AAN55332 (EMBL:AE015670) (400 aa) fasta scores: E(): 3.8e-51%2C 69.51 38d in 187 aa. Also similar to the N-terminus of the upstream CDS YEP0069 99.242 identity in 132 aa overlap. Similar to the whole of Yersinia enterocolitica transposase Tnp SWALL:AAN37566 (EMBL:AY150843) (191 aa) fasta scores: E(): 3.4e-70%2C 100 id in 188 aa%2C and to Shewanella oneidensis ISsod4%2Ctransposase so2292 SWALL:AAN55332 (EMBL:AE015670) (400 aa) fasta scores: E(): 3.8e-51%2C 69.51 38d in 187 aa pseudogene gene4254 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0088 YEP0089 YEP0089 YEP0089 61617 62168 - conserved hypothetical protein Similar to many nucleases including: Proteus vulgaris EDTA-resistant nuclease SWALL:BAB93759 (EMBL:AP004237) (221 aa) fasta scores: E(): 3.3e-11%2C38.09 38d in 126 aa and Salmonella typhimurium EDTA-resistant Nuclease Nuc SWALL:Q9R2H3 (EMBL:AB027308) (183 aa) fasta scores: E(): 1.3e-09%2C 32.09 38d in 134 aa. Previously sequenced as: Yersinia enterocolitica hypothetical 20.4 kDa protein SWALL:Q93KQ3 (EMBL:AF336309) (183 aa) fasta scores: E(): 1.7e-72%2C 100 38d in 183 aa. gene gene4255 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0089 YEP0090 YEP0090 YEP0090 62177 62512 - transposase for insertion sequence element IS1665 Similar the N-terminal and C-terminal regions of many transposases including: Escherichia coli transposase InsG for insertion sequence element IS4 or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 5.5e-50%2C 51.36 38d in 440 aa and to Shigella flexneri is4 orf s0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 8.5e-53%2C 50.82 38d in 427 aa. This transposase appears to lack the central transposase core domain%2C thought to be involved in metal binding%2C and possesses a possible site for programmed ribosomal frameshifting%2C following codon 150. IS1665 is also highly similar in the N-terminal and C-terminal regions to the Y. enterocolitica IS1660. Both IS1665 and IS1660 share the same inverted repeat sequences. gene gene4256 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0090 YEP0092 YEP0092 YEP0092 63019 64356 - transposase for insertion sequence element IS4 Similar to Escherichia coli transposase InsG for insertion sequence element IS4 or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 4.2e-165%2C89.72 38d in 438 aa gene gene4257 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0092 YEP0093 YEP0093 YEP0093 64448 64915 + transposase for insertion sequence element IS1328 (remnant) Similar to the very C-terminus of Yersinia enterocolitica transposase for insertion sequence element IS1328 SWALL:TRA8_YEREN (SWALL:Q56897) (334 aa) fasta scores: E(): 4.7e-36%2C 61.61 38d in 198 aa and Shigella flexneri 2a IS1328 transposase SWALL:Q93EZ2 (EMBL:AF326777) (334 aa) fasta scores: E(): 2.6e-33%2C56.63 38d in 196 aa. Note this CDS lacks a possible 5' end. pseudogene gene4258 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0093 YEP0094 YEP0094 tnp tnp 65333 65791 + transposase for IS1541 Identical to Yersinia enterocolitica IS1541 element transposase tnp SWALL:Q9X9G8 (EMBL:AJ238015) (152 aa) fasta scores: E(): 4.6e-66%2C 100 38d in 152 aa and highly similar to Yersinia pestis putative transposase y1761 SWALL:AAM85329 (EMBL:AE013779) (169 aa) fasta scores: E(): 8.3e-64%2C 96.71 38d in 152 aa gene gene4259 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0094 YEP0095 YEP0095 YEP0095 65993 66238 + putative plasmid copy number control protein Similar to Escherichia coli copy number control protein CopB SWALL:Q8RTD2 (EMBL:AF467508) (82 aa) fasta scores: E(): 2.3%2C 30.15 38d in 63 aa. Previously sequenced as: Yersinia enterocolitica putative replication protein RepC SWALL:Q93KQ2 (EMBL:AF336309) (81 aa) fasta scores: E(): 8.6e-31%2C 100 38d in 81 aa gene gene4260 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0095 YEP0096 YEP0096 YEP0096 66500 66556 + putative leader peptide RepB Similar to Yersinia enterocolitica putative leader peptide RepB repB SWALL:Q93KQ1 (EMBL:AF336309) (18 aa) fasta scores: E(): 1.4e-07%2C 100 38d in 18 aa gene gene4261 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0096 YEP0097 YEP0097 repA repA 66549 67571 + replication initiation protein Similar to Escherichia coli replication initiation protein RepA1 SWALL:REP4_ECOLI (SWALL:P13961) (340 aa) fasta scores: E(): 1.3e-51%2C 43.71 38d in 334 aa. Previously sequenced as: to Yersinia enterocolitica putative replication initiator protein RepA SWALL:Q933Q8 (EMBL:AF336309) (340 aa) fasta scores: E(): 1.7e-138%2C 100 id in 340 aa. Also similar to Klebsiella pneumoniae RepA SWALL:Q48418 (EMBL:U27345) (351 aa) fasta scores: E(): 5.4e-65%2C 54.57 38d in 328 aa gene gene4262 http://www.ncbi.nlm.nih.gov/gene/?term=YEP0097