locus-tag class description Y11_00001 PF00308 Bacterial dnaA protein Y11_00011 PF03960 ArsC family Y11_00021 PF01435 Peptidase family M48 Y11_00021 PF07720 Tetratricopeptide repeat Y11_00031 PF01594 AI-2E family transporter Y11_00051 PF00578 AhpC/TSA family Y11_00061 PF01842 ACT domain Y11_00071 PF00701 Dihydrodipicolinate synthetase family Y11_00081 PF06804 NlpB/DapX lipoprotein Y11_00091 PF01259 SAICAR synthetase Y11_00101 PF04228 Putative neutral zinc metallopeptidase Y11_00111 PF04284 Protein of unknown function (DUF441) Y11_00121 PF13718 GNAT acetyltransferase 2 Y11_00121 PF05127 Helicase Y11_00121 PF17176 tRNA-binding domain Y11_00151 PF02230 Phospholipase/Carboxylesterase Y11_00171 PF03245 Bacteriophage Rz lysis protein Y11_00181 PF01548 Transposase Y11_00181 PF02371 Transposase IS116/IS110/IS902 family Y11_00191 PF01548 Transposase Y11_00191 PF02371 Transposase IS116/IS110/IS902 family Y11_00221 PF13505 Outer membrane protein beta-barrel domain Y11_00251 PF13980 Uncharacterised protein family (UPF0370) Y11_00261 PF02557 D-alanyl-D-alanine carboxypeptidase Y11_00271 PF01546 Peptidase family M20/M25/M40 Y11_00271 PF07687 Peptidase dimerisation domain Y11_00281 PF03960 ArsC family Y11_00321 PF00873 AcrB/AcrD/AcrF family Y11_00341 PF00072 Response regulator receiver domain Y11_00341 PF00196 Bacterial regulatory proteins, luxR family Y11_00361 PF03927 NapD protein Y11_00371 PF01568 Molydopterin dinucleotide binding domain Y11_00371 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_00371 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y11_00371 PF00384 Molybdopterin oxidoreductase Y11_00381 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Y11_00391 PF03264 NapC/NirT cytochrome c family, N-terminal region Y11_00401 PF00293 NUDIX domain Y11_00411 PF00390 Malic enzyme, N-terminal domain Y11_00411 PF03949 Malic enzyme, NAD binding domain Y11_00411 PF01515 Phosphate acetyl/butaryl transferase Y11_00421 PF02371 Transposase IS116/IS110/IS902 family Y11_00421 PF01548 Transposase Y11_00451 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Y11_00461 PF01218 Coproporphyrinogen III oxidase Y11_00471 PF00583 Acetyltransferase (GNAT) family Y11_00481 PF04076 Bacterial OB fold (BOF) protein Y11_00491 PF06572 Protein of unknown function (DUF1131) Y11_00501 PF04261 Dyp-type peroxidase family Y11_00531 PF00701 Dihydrodipicolinate synthetase family Y11_00541 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Y11_00561 PF00480 ROK family Y11_00571 PF04074 YhcH/YjgK/YiaL Y11_00581 PF01380 SIS domain Y11_00581 PF01418 Helix-turn-helix domain, rpiR family Y11_00601 PF07690 Major Facilitator Superfamily Y11_00621 PF00528 Binding-protein-dependent transport system inner membrane component Y11_00631 PF00528 Binding-protein-dependent transport system inner membrane component Y11_00641 PF00005 ABC transporter Y11_00651 PF00291 Pyridoxal-phosphate dependent enzyme Y11_00661 PF12704 MacB-like periplasmic core domain Y11_00661 PF02687 FtsX-like permease family Y11_00661 PF00005 ABC transporter Y11_00671 PF00005 ABC transporter Y11_00671 PF02687 FtsX-like permease family Y11_00671 PF12704 MacB-like periplasmic core domain Y11_00681 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_00691 PF00072 Response regulator receiver domain Y11_00691 PF00486 Transcriptional regulatory protein, C terminal Y11_00701 PF00486 Transcriptional regulatory protein, C terminal Y11_00701 PF00072 Response regulator receiver domain Y11_00711 PF16527 Two-component sensor protein CpxA, periplasmic domain Y11_00711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_00711 PF00672 HAMP domain Y11_00711 PF00512 His Kinase A (phospho-acceptor) domain Y11_00721 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_00731 PF00391 PEP-utilising enzyme, mobile domain Y11_00731 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_00731 PF05524 PEP-utilising enzyme, N-terminal Y11_00741 PF00381 PTS HPr component phosphorylation site Y11_00751 PF00291 Pyridoxal-phosphate dependent enzyme Y11_00771 PF04354 ZipA, C-terminal FtsZ-binding domain Y11_00781 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_00781 PF01653 NAD-dependent DNA ligase adenylation domain Y11_00781 PF00533 BRCA1 C Terminus (BRCT) domain Y11_00781 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y11_00781 PF12826 Helix-hairpin-helix motif Y11_00791 PF12843 Putative quorum-sensing-regulated virulence factor Y11_00831 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_00841 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_00841 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_00841 PF07670 Nucleoside recognition Y11_00851 PF01566 Natural resistance-associated macrophage protein Y11_00871 PF00248 Aldo/keto reductase family Y11_00891 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_00891 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_00891 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_00901 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_00901 PF03466 LysR substrate binding domain Y11_00921 PF02685 Glucokinase Y11_00931 PF01548 Transposase Y11_00931 PF02371 Transposase IS116/IS110/IS902 family Y11_00941 PF07690 Major Facilitator Superfamily Y11_00951 PF00072 Response regulator receiver domain Y11_00951 PF04397 LytTr DNA-binding domain Y11_00961 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_00961 PF07694 5TMR of 5TMR-LYT Y11_00961 PF06580 Histidine kinase Y11_00971 PF07350 Protein of unknown function (DUF1479) Y11_00991 PF00155 Aminotransferase class I and II Y11_01001 PF01292 Prokaryotic cytochrome b561 Y11_01021 PF03783 Curli production assembly/transport component CsgG Y11_01041 PF01810 LysE type translocator Y11_01051 PF00005 ABC transporter Y11_01061 PF00528 Binding-protein-dependent transport system inner membrane component Y11_01081 PF13406 Transglycosylase SLT domain Y11_01091 PF00324 Amino acid permease Y11_01101 PF07969 Amidohydrolase family Y11_01121 PF07690 Major Facilitator Superfamily Y11_01131 PF02405 Permease MlaE Y11_01141 PF00005 ABC transporter Y11_01181 PF13472 GDSL-like Lipase/Acylhydrolase family Y11_01181 PF07859 alpha/beta hydrolase fold Y11_01191 PF01292 Prokaryotic cytochrome b561 Y11_01201 PF04264 YceI-like domain Y11_01211 PF04264 YceI-like domain Y11_01221 PF00356 Bacterial regulatory proteins, lacI family Y11_01231 PF00367 phosphotransferase system, EIIB Y11_01231 PF02378 Phosphotransferase system, EIIC Y11_01241 PF00232 Glycosyl hydrolase family 1 Y11_01261 PF03551 Transcriptional regulator PadR-like family Y11_01271 PF08274 PhnA Zinc-Ribbon Y11_01271 PF03831 PhnA domain Y11_01291 PF01226 Formate/nitrite transporter Y11_01301 PF00005 ABC transporter Y11_01311 PF03379 CcmB protein Y11_01331 PF01578 Cytochrome C assembly protein Y11_01341 PF04995 Heme exporter protein D (CcmD) Y11_01351 PF03100 CcmE Y11_01361 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y11_01361 PF01578 Cytochrome C assembly protein Y11_01371 PF08534 Redoxin Y11_01381 PF03918 Cytochrome C biogenesis protein Y11_01391 PF03918 Cytochrome C biogenesis protein Y11_01401 PF04333 MlaA lipoprotein Y11_01411 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Y11_01421 PF04175 Protein of unknown function (DUF406) Y11_01431 PF02803 Thiolase, C-terminal domain Y11_01431 PF00108 Thiolase, N-terminal domain Y11_01441 PF00378 Enoyl-CoA hydratase/isomerase Y11_01441 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y11_01441 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y11_01451 PF00300 Histidine phosphatase superfamily (branch 1) Y11_01461 PF01713 Smr domain Y11_01471 PF05175 Methyltransferase small domain Y11_01481 PF01264 Chorismate synthase Y11_01491 PF03411 Penicillin-insensitive murein endopeptidase Y11_01501 PF01925 Sulfite exporter TauE/SafE Y11_01511 PF04315 Elongation factor P hydroxylase Y11_01521 PF08891 YfcL protein Y11_01531 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Y11_01531 PF01266 FAD dependent oxidoreductase Y11_01541 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_01541 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_01551 PF05230 MASE2 domain Y11_01551 PF00990 Diguanylate cyclase, GGDEF domain Y11_01571 PF01177 Asp/Glu/Hydantoin racemase Y11_01591 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_01601 PF00232 Glycosyl hydrolase family 1 Y11_01611 PF02378 Phosphotransferase system, EIIC Y11_01621 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_01631 PF00356 Bacterial regulatory proteins, lacI family Y11_01641 PF00328 Histidine phosphatase superfamily (branch 2) Y11_01651 PF03600 Citrate transporter Y11_01691 PF02683 Cytochrome C biogenesis protein transmembrane region Y11_01691 PF11412 Disulphide bond corrector protein DsbC Y11_01711 PF00578 AhpC/TSA family Y11_01721 PF00155 Aminotransferase class I and II Y11_01731 PF00892 EamA-like transporter family Y11_01741 PF00892 EamA-like transporter family Y11_01761 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_01761 PF11890 Domain of unknown function (DUF3410) Y11_01761 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_01771 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_01771 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_01781 PF01416 tRNA pseudouridine synthase Y11_01791 PF09335 SNARE associated Golgi protein Y11_01801 PF17848 Acetyl-coA carboxylase zinc finger domain Y11_01801 PF01039 Carboxyl transferase domain Y11_01821 PF08245 Mur ligase middle domain Y11_01821 PF02875 Mur ligase family, glutamate ligase domain Y11_01831 PF05036 Sporulation related domain Y11_01841 PF02674 Colicin V production protein Y11_01851 PF00156 Phosphoribosyl transferase domain Y11_01861 PF02441 Flavoprotein Y11_01871 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_01881 PF00528 Binding-protein-dependent transport system inner membrane component Y11_01891 PF00528 Binding-protein-dependent transport system inner membrane component Y11_01901 PF00005 ABC transporter Y11_01931 PF01370 NAD dependent epimerase/dehydratase family Y11_01931 PF08338 Domain of unknown function (DUF1731) Y11_01951 PF12850 Calcineurin-like phosphoesterase superfamily domain Y11_01961 PF00293 NUDIX domain Y11_01991 PF03611 PTS system sugar-specific permease component Y11_02011 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_02021 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_02021 PF00356 Bacterial regulatory proteins, lacI family Y11_02031 PF07085 DRTGG domain Y11_02031 PF01515 Phosphate acetyl/butaryl transferase Y11_02051 PF00871 Acetokinase family Y11_02061 PF04217 Protein of unknown function, DUF412 Y11_02071 PF03887 YfbU domain Y11_02081 PF13419 Haloacid dehalogenase-like hydrolase Y11_02111 PF02080 TrkA-C domain Y11_02111 PF03600 Citrate transporter Y11_02131 PF00155 Aminotransferase class I and II Y11_02141 PF03466 LysR substrate binding domain Y11_02141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_02151 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Y11_02161 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_02171 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y11_02171 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y11_02191 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_02191 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y11_02191 PF10531 SLBB domain Y11_02201 PF01568 Molydopterin dinucleotide binding domain Y11_02201 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y11_02201 PF00384 Molybdopterin oxidoreductase Y11_02201 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_02211 PF00146 NADH dehydrogenase Y11_02221 PF12838 4Fe-4S dicluster domain Y11_02231 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Y11_02241 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y11_02251 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_02251 PF00361 Proton-conducting membrane transporter Y11_02261 PF00361 Proton-conducting membrane transporter Y11_02271 PF00361 Proton-conducting membrane transporter Y11_02291 PF06496 Protein of unknown function (DUF1097) Y11_02321 PF01202 Shikimate kinase Y11_02331 PF00106 short chain dehydrogenase Y11_02351 PF00356 Bacterial regulatory proteins, lacI family Y11_02361 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_02361 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_02371 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_02371 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_02381 PF07690 Major Facilitator Superfamily Y11_02391 PF03928 Haem-degrading Y11_02401 PF00920 Dehydratase family Y11_02411 PF05957 Bacterial protein of unknown function (DUF883) Y11_02421 PF00425 chorismate binding enzyme Y11_02441 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_02441 PF16582 Middle domain of thiamine pyrophosphate Y11_02441 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_02451 PF12697 Alpha/beta hydrolase family Y11_02461 PF00378 Enoyl-CoA hydratase/isomerase Y11_02471 PF13378 Enolase C-terminal domain-like Y11_02481 PF13193 AMP-binding enzyme C-terminal domain Y11_02481 PF00501 AMP-binding enzyme Y11_02501 PF06628 Catalase-related immune-responsive Y11_02501 PF00199 Catalase Y11_02511 PF07437 YfaZ precursor Y11_02521 PF03222 Tryptophan/tyrosine permease family Y11_02531 PF00994 Probable molybdopterin binding domain Y11_02571 PF00082 Subtilase family Y11_02591 PF03974 Ecotin Y11_02601 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_02611 PF00268 Ribonucleotide reductase, small chain Y11_02621 PF02867 Ribonucleotide reductase, barrel domain Y11_02621 PF03477 ATP cone domain Y11_02621 PF00317 Ribonucleotide reductase, all-alpha domain Y11_02641 PF03989 DNA gyrase C-terminal domain, beta-propeller Y11_02641 PF00521 DNA gyrase/topoisomerase IV, subunit A Y11_02651 PF09456 RcsC Alpha-Beta-Loop (ABL) Y11_02651 PF00512 His Kinase A (phospho-acceptor) domain Y11_02651 PF00072 Response regulator receiver domain Y11_02651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_02661 PF00072 Response regulator receiver domain Y11_02661 PF00196 Bacterial regulatory proteins, luxR family Y11_02671 PF01627 Hpt domain Y11_02671 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_02671 PF16359 RcsD-ABL domain Y11_02681 PF07690 Major Facilitator Superfamily Y11_02741 PF00267 Gram-negative porin Y11_02761 PF00144 Beta-lactamase Y11_02781 PF12706 Beta-lactamase superfamily domain Y11_02801 PF02743 Cache domain Y11_02801 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_02801 PF00672 HAMP domain Y11_02811 PF01278 Omptin family Y11_02821 PF06183 DinI-like family Y11_02841 PF06530 Phage antitermination protein Q Y11_02871 PF01380 SIS domain Y11_02871 PF01418 Helix-turn-helix domain, rpiR family Y11_02891 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_02891 PF00367 phosphotransferase system, EIIB Y11_02891 PF02378 Phosphotransferase system, EIIC Y11_02901 PF00232 Glycosyl hydrolase family 1 Y11_02911 PF00194 Eukaryotic-type carbonic anhydrase Y11_02921 PF00872 Transposase, Mutator family Y11_02951 PF00884 Sulfatase Y11_02951 PF11893 Domain of unknown function (DUF3413) Y11_02961 PF07208 Protein of unknown function (DUF1414) Y11_02971 PF04245 37-kD nucleoid-associated bacterial protein Y11_02981 PF01386 Ribosomal L25p family Y11_02991 PF04851 Type III restriction enzyme, res subunit Y11_02991 PF00271 Helicase conserved C-terminal domain Y11_03001 PF00849 RNA pseudouridylate synthase Y11_03001 PF01479 S4 domain Y11_03011 PF07690 Major Facilitator Superfamily Y11_03021 PF13989 YejG-like protein Y11_03031 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_03031 PF00005 ABC transporter Y11_03041 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_03041 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03051 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03061 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_03071 PF12792 CSS motif domain associated with EAL Y11_03071 PF00563 EAL domain Y11_03081 PF00877 NlpC/P60 family Y11_03091 PF01569 PAP2 superfamily Y11_03101 PF07683 Cobalamin synthesis protein cobW C-terminal domain Y11_03101 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_03121 PF07729 FCD domain Y11_03121 PF00392 Bacterial regulatory proteins, gntR family Y11_03131 PF08125 Mannitol dehydrogenase C-terminal domain Y11_03131 PF01232 Mannitol dehydrogenase Rossmann domain Y11_03151 PF03786 D-mannonate dehydratase (UxuA) Y11_03161 PF01132 Elongation factor P (EF-P) OB domain Y11_03161 PF08207 Elongation factor P (EF-P) KOW-like domain Y11_03161 PF09285 Elongation factor P, C-terminal Y11_03181 PF03222 Tryptophan/tyrosine permease family Y11_03191 PF03692 Putative zinc- or iron-chelating domain Y11_03201 PF01568 Molydopterin dinucleotide binding domain Y11_03201 PF18364 Molybdopterin oxidoreductase N-terminal domain Y11_03201 PF00384 Molybdopterin oxidoreductase Y11_03211 PF03264 NapC/NirT cytochrome c family, N-terminal region Y11_03231 PF13344 Haloacid dehalogenase-like hydrolase Y11_03231 PF00293 NUDIX domain Y11_03241 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_03241 PF00381 PTS HPr component phosphorylation site Y11_03251 PF00294 pfkB family carbohydrate kinase Y11_03261 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_03261 PF02378 Phosphotransferase system, EIIC Y11_03271 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_03271 PF02378 Phosphotransferase system, EIIC Y11_03281 PF00486 Transcriptional regulatory protein, C terminal Y11_03291 PF17550 Family of unknown function Y11_03311 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_03311 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_03321 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_03321 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_03331 PF13954 PapC N-terminal domain Y11_03331 PF13953 PapC C-terminal domain Y11_03331 PF00577 Outer membrane usher protein Y11_03341 PF01261 Xylose isomerase-like TIM barrel Y11_03351 PF03601 Conserved hypothetical protein 698 Y11_03381 PF03466 LysR substrate binding domain Y11_03381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_03391 PF00324 Amino acid permease Y11_03401 PF01032 FecCD transport family Y11_03411 PF00005 ABC transporter Y11_03421 PF07715 TonB-dependent Receptor Plug Domain Y11_03421 PF00593 TonB dependent receptor Y11_03431 PF13417 Glutathione S-transferase, N-terminal domain Y11_03431 PF00043 Glutathione S-transferase, C-terminal domain Y11_03471 PF03180 NLPA lipoprotein Y11_03481 PF09383 NIL domain Y11_03481 PF00005 ABC transporter Y11_03491 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03501 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_03511 PF00571 CBS domain Y11_03511 PF00291 Pyridoxal-phosphate dependent enzyme Y11_03521 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_03521 PF07943 Penicillin-binding protein 5, C-terminal domain Y11_03531 PF02371 Transposase IS116/IS110/IS902 family Y11_03531 PF01548 Transposase Y11_03541 PF03313 Serine dehydratase alpha chain Y11_03541 PF03315 Serine dehydratase beta chain Y11_03561 PF08220 DeoR-like helix-turn-helix domain Y11_03561 PF00455 DeoR C terminal sensor domain Y11_03571 PF01791 DeoC/LacD family aldolase Y11_03581 PF01569 PAP2 superfamily Y11_03601 PF06826 Predicted Permease Membrane Region Y11_03601 PF02080 TrkA-C domain Y11_03611 PF00462 Glutaredoxin Y11_03621 PF07214 Protein of unknown function (DUF1418) Y11_03631 PF10722 Putative bacterial sensory transduction regulator Y11_03641 PF13416 Bacterial extracellular solute-binding protein Y11_03661 PF00005 ABC transporter Y11_03661 PF08402 TOBE domain Y11_03671 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03681 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03701 PF10767 Protein of unknown function (DUF2593) Y11_03711 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_03721 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_03741 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03751 PF00528 Binding-protein-dependent transport system inner membrane component Y11_03761 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_03771 PF00005 ABC transporter Y11_03781 PF12883 Protein of unknown function (DUF3828) Y11_03791 PF01370 NAD dependent epimerase/dehydratase family Y11_03801 PF13460 NAD(P)H-binding Y11_03801 PF11066 Protein of unknown function (DUF2867) Y11_03811 PF01212 Beta-eliminating lyase Y11_03821 PF04072 Leucine carboxyl methyltransferase Y11_03831 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_03831 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_03831 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_03841 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_03841 PF00175 Oxidoreductase NAD-binding domain Y11_03841 PF00970 Oxidoreductase FAD-binding domain Y11_03851 PF03063 Prismane/CO dehydrogenase family Y11_03861 PF03956 Lysine exporter LysO Y11_03871 PF11398 Protein of unknown function (DUF2813) Y11_03881 PF04393 Protein of unknown function (DUF535) Y11_03891 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_03901 PF00005 ABC transporter Y11_03901 PF02687 FtsX-like permease family Y11_03901 PF12704 MacB-like periplasmic core domain Y11_03911 PF00313 'Cold-shock' DNA-binding domain Y11_03921 PF02617 ATP-dependent Clp protease adaptor protein ClpS Y11_03931 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_03931 PF00004 ATPase family associated with various cellular activities (AAA) Y11_03931 PF02861 Clp amino terminal domain, pathogenicity island component Y11_03931 PF17871 AAA lid domain Y11_03931 PF07724 AAA domain (Cdc48 subfamily) Y11_03941 PF01176 Translation initiation factor 1A / IF-1 Y11_03951 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Y11_03961 PF00005 ABC transporter Y11_03961 PF00664 ABC transporter transmembrane region Y11_03971 PF00005 ABC transporter Y11_03971 PF00664 ABC transporter transmembrane region Y11_03981 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_03991 PF01037 Lrp/AsnC ligand binding domain Y11_04001 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Y11_04001 PF01580 FtsK/SpoIIIE family Y11_04001 PF09397 Ftsk gamma domain Y11_04001 PF17854 FtsK alpha domain Y11_04011 PF03548 Outer membrane lipoprotein carrier protein LolA Y11_04021 PF12002 MgsA AAA+ ATPase C terminal Y11_04021 PF00004 ATPase family associated with various cellular activities (AAA) Y11_04021 PF16193 AAA C-terminal domain Y11_04031 PF02403 Seryl-tRNA synthetase N-terminal domain Y11_04031 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_04041 PF02371 Transposase IS116/IS110/IS902 family Y11_04041 PF01548 Transposase Y11_04051 PF00872 Transposase, Mutator family Y11_04061 PF07690 Major Facilitator Superfamily Y11_04071 PF04055 Radical SAM superfamily Y11_04081 PF01228 Glycine radical Y11_04081 PF02901 Pyruvate formate lyase-like Y11_04091 PF01226 Formate/nitrite transporter Y11_04121 PF01548 Transposase Y11_04121 PF02371 Transposase IS116/IS110/IS902 family Y11_04141 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Y11_04141 PF18381 YcaO cyclodehydratase C-terminal domain Y11_04151 PF00710 Asparaginase, N-terminal Y11_04151 PF17763 Glutaminase/Asparaginase C-terminal domain Y11_04161 PF00710 Asparaginase, N-terminal Y11_04161 PF17763 Glutaminase/Asparaginase C-terminal domain Y11_04171 PF04239 Protein of unknown function (DUF421) Y11_04181 PF00266 Aminotransferase class-V Y11_04191 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y11_04201 PF02224 Cytidylate kinase Y11_04211 PF00575 S1 RNA binding domain Y11_04221 PF00216 Bacterial DNA-binding protein Y11_04231 PF03772 Competence protein Y11_04231 PF00753 Metallo-beta-lactamase superfamily Y11_04241 PF00005 ABC transporter Y11_04241 PF00664 ABC transporter transmembrane region Y11_04251 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Y11_04261 PF07063 Domain of unknown function (DUF1338) Y11_04271 PF00313 'Cold-shock' DNA-binding domain Y11_04291 PF00313 'Cold-shock' DNA-binding domain Y11_04301 PF03966 Trm112p-like protein Y11_04311 PF02348 Cytidylyltransferase Y11_04321 PF01636 Phosphotransferase enzyme family Y11_04331 PF02698 DUF218 domain Y11_04361 PF17193 MukF C-terminal domain Y11_04361 PF03882 MukF winged-helix domain Y11_04361 PF17192 MukF middle domain Y11_04371 PF04288 MukE-like family Y11_04381 PF16330 MukB hinge domain Y11_04381 PF04310 MukB N-terminal Y11_04391 PF03734 L,D-transpeptidase catalytic domain Y11_04391 PF01471 Putative peptidoglycan binding domain Y11_04401 PF05951 Bacterial protein of unknown function (DUF882) Y11_04411 PF00753 Metallo-beta-lactamase superfamily Y11_04421 PF12792 CSS motif domain associated with EAL Y11_04421 PF00563 EAL domain Y11_04431 PF00155 Aminotransferase class I and II Y11_04441 PF00267 Gram-negative porin Y11_04451 PF01336 OB-fold nucleic acid binding domain Y11_04451 PF00152 tRNA synthetases class II (D, K and N) Y11_04461 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Y11_04461 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Y11_04471 PF11940 Domain of unknown function (DUF3458) Ig-like fold Y11_04471 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Y11_04471 PF01433 Peptidase family M1 domain Y11_04481 PF01180 Dihydroorotate dehydrogenase Y11_04501 PF07126 Cell-division protein ZapC Y11_04511 PF03476 MOSC N-terminal beta barrel domain Y11_04511 PF03473 MOSC domain Y11_04511 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_04521 PF02926 THUMP domain Y11_04521 PF10672 S-adenosylmethionine-dependent methyltransferase Y11_04521 PF01170 Putative RNA methylase family UPF0020 Y11_04531 PF12848 ABC transporter Y11_04531 PF00005 ABC transporter Y11_04531 PF16326 ABC transporter C-terminal domain Y11_04541 PF04403 Paraquat-inducible protein A Y11_04551 PF02470 MlaD protein Y11_04561 PF03886 ABC-type transport auxiliary lipoprotein component Y11_04571 PF04957 Ribosome modulation factor Y11_04581 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_04581 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_04601 PF07977 FabA-like domain Y11_04611 PF05362 Lon protease (S16) C-terminal proteolytic domain Y11_04611 PF13654 AAA domain Y11_04621 PF06303 MatP N-terminal domain Y11_04621 PF17414 MatP C-terminal ribbon-helix-helix domain Y11_04631 PF01389 OmpA-like transmembrane domain Y11_04631 PF00691 OmpA family Y11_04641 PF03846 Cell division inhibitor SulA Y11_04651 PF04993 TfoX N-terminal domain Y11_04651 PF04994 TfoX C-terminal domain Y11_04671 PF12805 FUSC-like inner membrane protein yccS Y11_04681 PF03733 Inner membrane component domain Y11_04691 PF13361 UvrD-like helicase C-terminal domain Y11_04691 PF12462 DNA helicase IV / RNA helicase N terminal Y11_04691 PF00580 UvrD/REP helicase N-terminal domain Y11_04701 PF02142 MGS-like domain Y11_04711 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Y11_04721 PF13380 CoA binding domain Y11_04731 PF08755 Hemimethylated DNA-binding protein YccV like Y11_04741 PF10672 S-adenosylmethionine-dependent methyltransferase Y11_04741 PF17785 PUA-like domain Y11_04771 PF00708 Acylphosphatase Y11_04781 PF04358 DsrC like protein Y11_04801 PF02335 Cytochrome c552 Y11_04811 PF13435 Cytochrome c554 and c-prime Y11_04811 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Y11_04821 PF13247 4Fe-4S dicluster domain Y11_04821 PF00037 4Fe-4S binding domain Y11_04831 PF03916 Polysulphide reductase, NrfD Y11_04841 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Y11_04841 PF01578 Cytochrome C assembly protein Y11_04851 PF08534 Redoxin Y11_04861 PF03918 Cytochrome C biogenesis protein Y11_04881 PF03472 Autoinducer binding domain Y11_04881 PF00196 Bacterial regulatory proteins, luxR family Y11_04891 PF00765 Autoinducer synthase Y11_04921 PF03471 Transporter associated domain Y11_04921 PF00999 Sodium/hydrogen exchanger family Y11_04921 PF02080 TrkA-C domain Y11_04931 PF02371 Transposase IS116/IS110/IS902 family Y11_04931 PF01548 Transposase Y11_04951 PF01757 Acyltransferase family Y11_04961 PF04349 Periplasmic glucan biosynthesis protein, MdoG Y11_04971 PF00535 Glycosyl transferase family 2 Y11_04981 PF01548 Transposase Y11_04981 PF02371 Transposase IS116/IS110/IS902 family Y11_04991 PF00854 POT family Y11_05001 PF07690 Major Facilitator Superfamily Y11_05011 PF07681 DoxX Y11_05031 PF18807 Tripartite Tc toxins repeat Y11_05031 PF05785 Rho-activating domain of cytotoxic necrotizing factor Y11_05041 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_05051 PF00072 Response regulator receiver domain Y11_05051 PF00196 Bacterial regulatory proteins, luxR family Y11_05061 PF00512 His Kinase A (phospho-acceptor) domain Y11_05061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_05071 PF13247 4Fe-4S dicluster domain Y11_05081 PF03916 Polysulphide reductase, NrfD Y11_05091 PF01568 Molydopterin dinucleotide binding domain Y11_05091 PF00384 Molybdopterin oxidoreductase Y11_05091 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_05121 PF01594 AI-2E family transporter Y11_05141 PF00196 Bacterial regulatory proteins, luxR family Y11_05151 PF01266 FAD dependent oxidoreductase Y11_05161 PF13991 BssS protein family Y11_05171 PF06183 DinI-like family Y11_05181 PF01979 Amidohydrolase family Y11_05191 PF03992 Antibiotic biosynthesis monooxygenase Y11_05201 PF10150 Ribonuclease E/G family Y11_05201 PF12111 Polyribonucleotide phosphorylase C terminal Y11_05201 PF10150 Ribonuclease E/G family Y11_05201 PF00575 S1 RNA binding domain Y11_05201 PF12111 Polyribonucleotide phosphorylase C terminal Y11_05201 PF00575 S1 RNA binding domain Y11_05211 PF00849 RNA pseudouridylate synthase Y11_05211 PF01479 S4 domain Y11_05221 PF02545 Maf-like protein Y11_05231 PF02620 Large ribosomal RNA subunit accumulation protein YceD Y11_05241 PF01783 Ribosomal L32p protein family Y11_05251 PF02504 Fatty acid synthesis protein Y11_05261 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Y11_05261 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Y11_05271 PF00698 Acyl transferase domain Y11_05291 PF00550 Phosphopantetheine attachment site Y11_05301 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_05301 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_05311 PF01063 Amino-transferase class IV Y11_05321 PF02618 YceG-like family Y11_05331 PF02223 Thymidylate kinase Y11_05341 PF09115 DNA polymerase III, delta subunit, C terminal Y11_05351 PF01026 TatD related DNase Y11_05361 PF00367 phosphotransferase system, EIIB Y11_05361 PF02378 Phosphotransferase system, EIIC Y11_05381 PF03412 Peptidase C39 family Y11_05381 PF00664 ABC transporter transmembrane region Y11_05381 PF00005 ABC transporter Y11_05401 PF04055 Radical SAM superfamily Y11_05401 PF13186 Iron-sulfur cluster-binding domain Y11_05421 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_05421 PF12793 Sugar transport-related sRNA regulator N-term Y11_05431 PF08501 Shikimate dehydrogenase substrate binding domain Y11_05441 PF01230 HIT domain Y11_05451 PF07233 Protein of unknown function (DUF1425) Y11_05461 PF13036 Peptidoglycan-synthase activator LpoB Y11_05461 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_05471 PF01636 Phosphotransferase enzyme family Y11_05481 PF00933 Glycosyl hydrolase family 3 N terminal domain Y11_05491 PF05728 Uncharacterised protein family (UPF0227) Y11_05501 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_05511 PF05433 Glycine zipper 2TM domain Y11_05521 PF17757 UvrB interaction domain Y11_05521 PF03461 TRCF domain Y11_05521 PF00271 Helicase conserved C-terminal domain Y11_05521 PF00270 DEAD/DEAH box helicase Y11_05521 PF02559 CarD-like/TRCF domain Y11_05531 PF12704 MacB-like periplasmic core domain Y11_05531 PF02687 FtsX-like permease family Y11_05541 PF00005 ABC transporter Y11_05551 PF02687 FtsX-like permease family Y11_05551 PF12704 MacB-like periplasmic core domain Y11_05561 PF00480 ROK family Y11_05571 PF02146 Sir2 family Y11_05581 PF01546 Peptidase family M20/M25/M40 Y11_05581 PF07687 Peptidase dimerisation domain Y11_05591 PF08007 Cupin superfamily protein Y11_05601 PF08918 PhoQ Sensor Y11_05601 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_05611 PF00486 Transcriptional regulatory protein, C terminal Y11_05611 PF00072 Response regulator receiver domain Y11_05631 PF00206 Lyase Y11_05631 PF08328 Adenylosuccinate lyase C-terminal Y11_05641 PF04356 Protein of unknown function (DUF489) Y11_05661 PF00293 NUDIX domain Y11_05671 PF00849 RNA pseudouridylate synthase Y11_05681 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_05751 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_05791 PF01306 LacY proton/sugar symporter Y11_05801 PF08244 Glycosyl hydrolases family 32 C terminal Y11_05801 PF00251 Glycosyl hydrolases family 32 N-terminal domain Y11_05811 PF00356 Bacterial regulatory proteins, lacI family Y11_05811 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_05831 PF08447 PAS fold Y11_05831 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_05841 PF00817 impB/mucB/samB family Y11_05841 PF11799 impB/mucB/samB family C-terminal domain Y11_05841 PF13438 Domain of unknown function (DUF4113) Y11_05851 PF00717 Peptidase S24-like Y11_05871 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_05881 PF05368 NmrA-like family Y11_05891 PF01638 HxlR-like helix-turn-helix Y11_05941 PF00892 EamA-like transporter family Y11_05971 PF07007 Lysozyme inhibitor LprI Y11_05981 PF06411 HdeA/HdeB family Y11_06001 PF00990 Diguanylate cyclase, GGDEF domain Y11_06001 PF01590 GAF domain Y11_06001 PF00360 Phytochrome region Y11_06001 PF00563 EAL domain Y11_06011 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_06031 PF00664 ABC transporter transmembrane region Y11_06031 PF00005 ABC transporter Y11_06061 PF13520 Amino acid permease Y11_06081 PF12833 Helix-turn-helix domain Y11_06081 PF14525 AraC-binding-like domain Y11_06101 PF10964 Protein of unknown function (DUF2766) Y11_06111 PF13996 YobH-like protein Y11_06121 PF13998 MgrB protein Y11_06131 PF13974 YebO-like protein Y11_06161 PF00324 Amino acid permease Y11_06171 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP Y11_06181 PF10736 Protein of unknown function (DUF2627) Y11_06201 PF03717 Penicillin-binding Protein dimerisation domain Y11_06201 PF00905 Penicillin binding protein transpeptidase domain Y11_06211 PF03717 Penicillin-binding Protein dimerisation domain Y11_06211 PF00905 Penicillin binding protein transpeptidase domain Y11_06221 PF13847 Methyltransferase domain Y11_06241 PF13426 PAS domain Y11_06241 PF00990 Diguanylate cyclase, GGDEF domain Y11_06241 PF00563 EAL domain Y11_06241 PF05231 MASE1 Y11_06241 PF08448 PAS fold Y11_06241 PF08447 PAS fold Y11_06251 PF07715 TonB-dependent Receptor Plug Domain Y11_06251 PF00593 TonB dependent receptor Y11_06261 PF02659 Putative manganese efflux pump Y11_06271 PF06173 Protein of unknown function (DUF986) Y11_06281 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_06291 PF03609 PTS system sorbose-specific iic component Y11_06301 PF03610 PTS system fructose IIA component Y11_06301 PF03830 PTS system sorbose subfamily IIB component Y11_06321 PF03471 Transporter associated domain Y11_06321 PF03741 Integral membrane protein TerC family Y11_06341 PF03313 Serine dehydratase alpha chain Y11_06341 PF03315 Serine dehydratase beta chain Y11_06361 PF00293 NUDIX domain Y11_06371 PF04715 Anthranilate synthase component I, N terminal region Y11_06371 PF00425 chorismate binding enzyme Y11_06381 PF03701 Uncharacterised protein family (UPF0181) Y11_06391 PF02222 ATP-grasp domain Y11_06401 PF00271 Helicase conserved C-terminal domain Y11_06401 PF00270 DEAD/DEAH box helicase Y11_06401 PF03880 DbpA RNA binding domain Y11_06411 PF07130 YebG protein Y11_06431 PF13995 YebF-like protein Y11_06441 PF00326 Prolyl oligopeptidase family Y11_06441 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Y11_06451 PF00929 Exonuclease Y11_06471 PF00561 alpha/beta hydrolase fold Y11_06481 PF06440 DNA polymerase III, theta subunit Y11_06491 PF00210 Ferritin-like domain Y11_06511 PF04234 CopC domain Y11_06521 PF05425 Copper resistance protein D Y11_06531 PF10709 Protein of unknown function (DUF2511) Y11_06541 PF02899 Phage integrase, N-terminal SAM-like domain Y11_06541 PF00589 Phage integrase family Y11_06641 PF00872 Transposase, Mutator family Y11_06651 PF08242 Methyltransferase domain Y11_06661 PF00872 Transposase, Mutator family Y11_06691 PF07690 Major Facilitator Superfamily Y11_06721 PF00324 Amino acid permease Y11_06731 PF03390 2-hydroxycarboxylate transporter family Y11_06741 PF00072 Response regulator receiver domain Y11_06751 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Y11_06751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_06751 PF17203 Single cache domain 3 Y11_06751 PF00989 PAS fold Y11_06761 PF00455 DeoR C terminal sensor domain Y11_06761 PF08220 DeoR-like helix-turn-helix domain Y11_06771 PF07005 Sugar-binding N-terminal domain Y11_06771 PF17042 Nucleotide-binding C-terminal domain Y11_06781 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_06791 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_06801 PF01261 Xylose isomerase-like TIM barrel Y11_06811 PF04960 Glutaminase Y11_06841 PF03239 Iron permease FTR1 family Y11_06851 PF10634 Fe2+ transport protein Y11_06871 PF00005 ABC transporter Y11_06871 PF02687 FtsX-like permease family Y11_06871 PF12704 MacB-like periplasmic core domain Y11_06901 PF12704 MacB-like periplasmic core domain Y11_06901 PF00005 ABC transporter Y11_06901 PF02687 FtsX-like permease family Y11_06911 PF00578 AhpC/TSA family Y11_06931 PF09313 Domain of unknown function (DUF1971) Y11_06931 PF03848 Tellurite resistance protein TehB Y11_06941 PF03466 LysR substrate binding domain Y11_06941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_06951 PF01411 tRNA synthetases class II (A) Y11_06951 PF02272 DHHA1 domain Y11_06951 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_06961 PF11575 FhuF 2Fe-2S C-terminal domain Y11_06961 PF06276 Ferric iron reductase FhuF-like transporter Y11_06971 PF00557 Metallopeptidase family M24 Y11_07001 PF14883 Hypothetical glycosyl hydrolase family 13 Y11_07001 PF01522 Polysaccharide deacetylase Y11_07011 PF00535 Glycosyl transferase family 2 Y11_07021 PF13994 PgaD-like protein Y11_07051 PF02562 PhoH-like protein Y11_07081 PF00750 tRNA synthetases class I (R) Y11_07081 PF05746 DALR anticodon binding domain Y11_07081 PF03485 Arginyl tRNA synthetase N terminal domain Y11_07091 PF06185 YecM protein Y11_07101 PF03932 CutC family Y11_07121 PF02371 Transposase IS116/IS110/IS902 family Y11_07121 PF01548 Transposase Y11_07131 PF01548 Transposase Y11_07131 PF02371 Transposase IS116/IS110/IS902 family Y11_07181 PF00924 Mechanosensitive ion channel Y11_07191 PF02798 Glutathione S-transferase, N-terminal domain Y11_07191 PF14834 Glutathione S-transferase, C-terminal domain Y11_07251 PF07351 Protein of unknown function (DUF1480) Y11_07261 PF00990 Diguanylate cyclase, GGDEF domain Y11_07261 PF08448 PAS fold Y11_07261 PF00563 EAL domain Y11_07261 PF08447 PAS fold Y11_07331 PF07690 Major Facilitator Superfamily Y11_07341 PF03466 LysR substrate binding domain Y11_07341 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_07351 PF02470 MlaD protein Y11_07361 PF04403 Paraquat-inducible protein A Y11_07371 PF13185 GAF domain Y11_07381 PF04352 ProQ/FINO family Y11_07381 PF17516 ProQ C-terminal domain Y11_07391 PF03572 Peptidase family S41 Y11_07391 PF11818 C-terminal domain of tail specific protease (DUF3340) Y11_07391 PF00595 PDZ domain Y11_07391 PF17804 Tail specific protease N-terminal domain Y11_07401 PF01435 Peptidase family M48 Y11_07421 PF07690 Major Facilitator Superfamily Y11_07431 PF14583 Oligogalacturonate lyase Y11_07441 PF01614 Bacterial transcriptional regulator Y11_07441 PF09339 IclR helix-turn-helix domain Y11_07451 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_07501 PF04307 LexA-binding, inner membrane-associated putative hydrolase Y11_07511 PF06178 Oligogalacturonate-specific porin protein (KdgM) Y11_07531 PF01547 Bacterial extracellular solute-binding protein Y11_07541 PF17912 MalK OB fold domain Y11_07541 PF00005 ABC transporter Y11_07541 PF03459 TOBE domain Y11_07551 PF00528 Binding-protein-dependent transport system inner membrane component Y11_07561 PF00528 Binding-protein-dependent transport system inner membrane component Y11_07571 PF06917 Periplasmic pectate lyase Y11_07601 PF04962 KduI/IolB family Y11_07611 PF07883 Cupin domain Y11_07621 PF13419 Haloacid dehalogenase-like hydrolase Y11_07631 PF14002 YniB-like protein Y11_07641 PF03466 LysR substrate binding domain Y11_07641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_07651 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Y11_07651 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Y11_07661 PF00378 Enoyl-CoA hydratase/isomerase Y11_07681 PF02310 B12 binding domain Y11_07681 PF01642 Methylmalonyl-CoA mutase Y11_07701 PF00950 ABC 3 transport family Y11_07711 PF00950 ABC 3 transport family Y11_07721 PF00005 ABC transporter Y11_07731 PF01297 Zinc-uptake complex component A periplasmic Y11_07741 PF01464 Transglycosylase SLT domain Y11_07751 PF01914 MarC family integral membrane protein Y11_07821 PF04474 Protein of unknown function (DUF554) Y11_07831 PF13619 KTSC domain Y11_07851 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_07851 PF03129 Anticodon binding domain Y11_07851 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_07851 PF02824 TGS domain Y11_07861 PF00707 Translation initiation factor IF-3, C-terminal domain Y11_07861 PF05198 Translation initiation factor IF-3, N-terminal domain Y11_07871 PF01632 Ribosomal protein L35 Y11_07881 PF00453 Ribosomal protein L20 Y11_07891 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Y11_07891 PF01409 tRNA synthetases class II core domain (F) Y11_07901 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Y11_07901 PF01588 Putative tRNA binding domain Y11_07901 PF03483 B3/4 domain Y11_07901 PF03484 tRNA synthetase B5 domain Y11_07901 PF03147 Ferredoxin-fold anticodon binding domain Y11_07911 PF00216 Bacterial DNA-binding protein Y11_07951 PF01032 FecCD transport family Y11_07961 PF00255 Glutathione peroxidase Y11_07971 PF00005 ABC transporter Y11_07981 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y11_07991 PF00535 Glycosyl transferase family 2 Y11_08001 PF02911 Formyl transferase, C-terminal domain Y11_08001 PF01370 NAD dependent epimerase/dehydratase family Y11_08001 PF00551 Formyl transferase Y11_08011 PF01522 Polysaccharide deacetylase Y11_08021 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Y11_08031 PF00892 EamA-like transporter family Y11_08051 PF00877 NlpC/P60 family Y11_08061 PF10437 Bacterial lipoate protein ligase C-terminus Y11_08061 PF03099 Biotin/lipoate A/B protein ligase family Y11_08071 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Y11_08081 PF01497 Periplasmic binding protein Y11_08091 PF05171 Haemin-degrading HemS.ChuX domain Y11_08101 PF07715 TonB-dependent Receptor Plug Domain Y11_08101 PF00593 TonB dependent receptor Y11_08111 PF10636 Hemin uptake protein hemP Y11_08121 PF00793 DAHP synthetase I family Y11_08131 PF03618 Kinase/pyrophosphorylase Y11_08141 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_08141 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Y11_08141 PF00391 PEP-utilising enzyme, mobile domain Y11_08151 PF01594 AI-2E family transporter Y11_08161 PF01565 FAD binding domain Y11_08161 PF02913 FAD linked oxidases, C-terminal domain Y11_08161 PF13183 4Fe-4S dicluster domain Y11_08171 PF03061 Thioesterase superfamily Y11_08181 PF01521 Iron-sulphur cluster biosynthesis Y11_08191 PF01458 Uncharacterized protein family (UPF0051) Y11_08201 PF00005 ABC transporter Y11_08211 PF01458 Uncharacterized protein family (UPF0051) Y11_08221 PF00266 Aminotransferase class-V Y11_08231 PF02657 Fe-S metabolism associated domain Y11_08241 PF03734 L,D-transpeptidase catalytic domain Y11_08241 PF17969 L,D-transpeptidase C-terminal domain Y11_08241 PF01476 LysM domain Y11_08251 PF02887 Pyruvate kinase, alpha/beta domain Y11_08251 PF00224 Pyruvate kinase, barrel domain Y11_08261 PF01554 MatE Y11_08271 PF00677 Lumazine binding domain Y11_08291 PF07690 Major Facilitator Superfamily Y11_08301 PF03466 LysR substrate binding domain Y11_08301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_08311 PF00356 Bacterial regulatory proteins, lacI family Y11_08321 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y11_08321 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y11_08331 PF00877 NlpC/P60 family Y11_08341 PF00462 Glutaredoxin Y11_08351 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y11_08361 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y11_08371 PF16925 Tetracyclin repressor-like, C-terminal domain Y11_08371 PF00440 Bacterial regulatory proteins, tetR family Y11_08381 PF00884 Sulfatase Y11_08381 PF08019 Phosphoethanolamine transferase EptA/EptB Y11_08391 PF06945 Protein of unknown function (DUF1289) Y11_08401 PF00248 Aldo/keto reductase family Y11_08411 PF04632 Fusaric acid resistance protein family Y11_08421 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_08421 PF00529 HlyD membrane-fusion protein of T1SS Y11_08431 PF07869 Protein of unknown function (DUF1656) Y11_08441 PF01047 MarR family Y11_08451 PF05433 Glycine zipper 2TM domain Y11_08471 PF03702 Anhydro-N-acetylmuramic acid kinase Y11_08481 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Y11_08491 PF01243 Pyridoxamine 5'-phosphate oxidase Y11_08491 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Y11_08501 PF00579 tRNA synthetases class I (W and Y) Y11_08501 PF01479 S4 domain Y11_08511 PF08543 Phosphomethylpyrimidine kinase Y11_08521 PF02798 Glutathione S-transferase, N-terminal domain Y11_08521 PF00043 Glutathione S-transferase, C-terminal domain Y11_08531 PF11656 YjbD family (DUF3811) Y11_08541 PF04893 Yip1 domain Y11_08571 PF00854 POT family Y11_08591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_08591 PF03466 LysR substrate binding domain Y11_08621 PF00005 ABC transporter Y11_08631 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_08631 PF00005 ABC transporter Y11_08641 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_08641 PF00528 Binding-protein-dependent transport system inner membrane component Y11_08651 PF00528 Binding-protein-dependent transport system inner membrane component Y11_08661 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_08671 PF02371 Transposase IS116/IS110/IS902 family Y11_08671 PF01548 Transposase Y11_08681 PF02917 Pertussis toxin, subunit 1 Y11_08701 PF02954 Bacterial regulatory protein, Fis family Y11_08701 PF00158 Sigma-54 interaction domain Y11_08711 PF04012 PspA/IM30 family Y11_08721 PF06667 Phage shock protein B Y11_08731 PF04024 PspC domain Y11_08751 PF04317 YcjX-like family, DUF463 Y11_08761 PF05128 Domain of unknown function (DUF697) Y11_08781 PF00158 Sigma-54 interaction domain Y11_08781 PF18024 Helix-turn-helix domain Y11_08791 PF08534 Redoxin Y11_08801 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Y11_08801 PF13378 Enolase C-terminal domain-like Y11_08811 PF00246 Zinc carboxypeptidase Y11_08821 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_08831 PF01544 CorA-like Mg2+ transporter protein Y11_08841 PF01171 PP-loop family Y11_08861 PF00388 Phosphatidylinositol-specific phospholipase C, X domain Y11_08871 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Y11_08871 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_08871 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Y11_08871 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Y11_08871 PF10371 Domain of unknown function Y11_08891 PF00893 Small Multidrug Resistance protein Y11_08901 PF02308 MgtC family Y11_08911 PF03891 Domain of unknown function (DUF333) Y11_08921 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_08921 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_08931 PF11739 Dicarboxylate transport Y11_08941 PF13617 YnbE-like lipoprotein Y11_08951 PF07027 Protein of unknown function (DUF1318) Y11_08961 PF02525 Flavodoxin-like fold Y11_08971 PF04408 Helicase associated domain (HA2) Y11_08971 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Y11_08971 PF00271 Helicase conserved C-terminal domain Y11_08971 PF11898 Domain of unknown function (DUF3418) Y11_08971 PF00270 DEAD/DEAH box helicase Y11_09001 PF00089 Trypsin Y11_09021 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Y11_09041 PF00672 HAMP domain Y11_09041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_09041 PF00512 His Kinase A (phospho-acceptor) domain Y11_09051 PF00072 Response regulator receiver domain Y11_09051 PF00486 Transcriptional regulatory protein, C terminal Y11_09071 PF13520 Amino acid permease Y11_09091 PF07338 Protein of unknown function (DUF1471) Y11_09101 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Y11_09101 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Y11_09101 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Y11_09111 PF02233 NAD(P) transhydrogenase beta subunit Y11_09121 PF00582 Universal stress protein family Y11_09131 PF13545 Crp-like helix-turn-helix domain Y11_09131 PF00027 Cyclic nucleotide-binding domain Y11_09141 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y11_09141 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_09171 PF06445 GyrI-like small molecule binding domain Y11_09191 PF00245 Alkaline phosphatase Y11_09201 PF00294 pfkB family carbohydrate kinase Y11_09211 PF07690 Major Facilitator Superfamily Y11_09251 PF13419 Haloacid dehalogenase-like hydrolase Y11_09261 PF01842 ACT domain Y11_09271 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_09271 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_09271 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_09291 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_09381 PF00459 Inositol monophosphatase family Y11_09391 PF00356 Bacterial regulatory proteins, lacI family Y11_09411 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Y11_09411 PF01048 Phosphorylase superfamily Y11_09421 PF00239 Resolvase, N terminal domain Y11_09421 PF02796 Helix-turn-helix domain of resolvase Y11_09431 PF02661 Fic/DOC family Y11_09431 PF13784 Fic/DOC family N-terminal Y11_09441 PF03466 LysR substrate binding domain Y11_09441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_09501 PF00528 Binding-protein-dependent transport system inner membrane component Y11_09511 PF00528 Binding-protein-dependent transport system inner membrane component Y11_09521 PF01037 Lrp/AsnC ligand binding domain Y11_09571 PF02798 Glutathione S-transferase, N-terminal domain Y11_09601 PF05707 Zonular occludens toxin (Zot) Y11_09711 PF00263 Bacterial type II and III secretion system protein Y11_09711 PF03958 Bacterial type II/III secretion system short domain Y11_09751 PF07338 Protein of unknown function (DUF1471) Y11_09781 PF00106 short chain dehydrogenase Y11_09791 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Y11_09811 PF06932 Protein of unknown function (DUF1283) Y11_09821 PF06649 Protein of unknown function (DUF1161) Y11_09841 PF00654 Voltage gated chloride channel Y11_09861 PF00480 ROK family Y11_09871 PF03466 LysR substrate binding domain Y11_09871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_09881 PF07690 Major Facilitator Superfamily Y11_09921 PF05472 DNA replication terminus site-binding protein (Ter protein) Y11_09941 PF02371 Transposase IS116/IS110/IS902 family Y11_09941 PF01548 Transposase Y11_09961 PF00206 Lyase Y11_09961 PF10415 Fumarase C C-terminus Y11_09971 PF01238 Phosphomannose isomerase type I Y11_09981 PF06097 Bacterial protein of unknown function (DUF945) Y11_09991 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_10001 PF00356 Bacterial regulatory proteins, lacI family Y11_10001 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_10011 PF02378 Phosphotransferase system, EIIC Y11_10011 PF00367 phosphotransferase system, EIIB Y11_10021 PF00155 Aminotransferase class I and II Y11_10031 PF00962 Adenosine/AMP deaminase Y11_10041 PF13593 SBF-like CPA transporter family (DUF4137) Y11_10051 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_10051 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_10061 PF12833 Helix-turn-helix domain Y11_10061 PF02311 AraC-like ligand binding domain Y11_10071 PF02653 Branched-chain amino acid transport system / permease component Y11_10081 PF02653 Branched-chain amino acid transport system / permease component Y11_10091 PF00005 ABC transporter Y11_10101 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_10111 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_10121 PF11762 L-arabinose isomerase C-terminal domain Y11_10121 PF02610 L-arabinose isomerase Y11_10131 PF02463 RecF/RecN/SMC N terminal domain Y11_10141 PF00005 ABC transporter Y11_10141 PF03412 Peptidase C39 family Y11_10141 PF00664 ABC transporter transmembrane region Y11_10171 PF00005 ABC transporter Y11_10171 PF00664 ABC transporter transmembrane region Y11_10171 PF03412 Peptidase C39 family Y11_10191 PF01268 Formate--tetrahydrofolate ligase Y11_10201 PF10754 Protein of unknown function (DUF2569) Y11_10211 PF02508 Rnf-Nqr subunit, membrane protein Y11_10221 PF04060 Putative Fe-S cluster Y11_10231 PF10531 SLBB domain Y11_10231 PF13375 RnfC Barrel sandwich hybrid domain Y11_10231 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_10231 PF13237 4Fe-4S dicluster domain Y11_10261 PF12833 Helix-turn-helix domain Y11_10261 PF06445 GyrI-like small molecule binding domain Y11_10281 PF03116 NQR2, RnfD, RnfE family Y11_10291 PF04205 FMN-binding domain Y11_10301 PF02508 Rnf-Nqr subunit, membrane protein Y11_10311 PF10576 Iron-sulfur binding domain of endonuclease III Y11_10311 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_10311 PF00633 Helix-hairpin-helix motif Y11_10341 PF01548 Transposase Y11_10341 PF02371 Transposase IS116/IS110/IS902 family Y11_10361 PF00384 Molybdopterin oxidoreductase Y11_10381 PF00773 RNB domain Y11_10381 PF08206 Ribonuclease B OB domain Y11_10381 PF00575 S1 RNA binding domain Y11_10401 PF13722 5TM C-terminal transporter carbon starvation CstA Y11_10401 PF02554 Carbon starvation protein CstA Y11_10421 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y11_10431 PF08220 DeoR-like helix-turn-helix domain Y11_10431 PF00455 DeoR C terminal sensor domain Y11_10451 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_10461 PF05433 Glycine zipper 2TM domain Y11_10481 PF02371 Transposase IS116/IS110/IS902 family Y11_10481 PF01548 Transposase Y11_10491 PF01253 Translation initiation factor SUI1 Y11_10501 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Y11_10511 PF07338 Protein of unknown function (DUF1471) Y11_10521 PF03594 Benzoate membrane transport protein Y11_10531 PF03594 Benzoate membrane transport protein Y11_10541 PF07883 Cupin domain Y11_10541 PF01381 Helix-turn-helix Y11_10561 PF18073 Rubredoxin metal binding domain Y11_10571 PF06305 Lipopolysaccharide assembly protein A domain Y11_10581 PF01569 PAP2 superfamily Y11_10591 PF00925 GTP cyclohydrolase II Y11_10601 PF00694 Aconitase C-terminal domain Y11_10601 PF00330 Aconitase family (aconitate hydratase) Y11_10631 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_10631 PF03466 LysR substrate binding domain Y11_10641 PF08272 Topoisomerase I zinc-ribbon-like Y11_10641 PF01131 DNA topoisomerase Y11_10641 PF01751 Toprim domain Y11_10641 PF01396 Topoisomerase DNA binding C4 zinc finger Y11_10661 PF10692 Protein of unknown function (DUF2498) Y11_10671 PF08496 Peptidase family S49 N-terminal Y11_10671 PF01343 Peptidase family S49 Y11_10681 PF00106 short chain dehydrogenase Y11_10691 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y11_10691 PF12557 Cob(I)alamin adenosyltransferase N terminal Y11_10711 PF01479 S4 domain Y11_10711 PF00849 RNA pseudouridylate synthase Y11_10721 PF01300 Telomere recombination Y11_10731 PF02811 PHP domain Y11_10751 PF04715 Anthranilate synthase component I, N terminal region Y11_10751 PF00425 chorismate binding enzyme Y11_10761 PF00117 Glutamine amidotransferase class-I Y11_10771 PF00591 Glycosyl transferase family, a/b domain Y11_10771 PF02885 Glycosyl transferase family, helical bundle domain Y11_10781 PF00218 Indole-3-glycerol phosphate synthase Y11_10781 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Y11_10791 PF00291 Pyridoxal-phosphate dependent enzyme Y11_10801 PF00290 Tryptophan synthase alpha chain Y11_10821 PF03922 OmpW family Y11_10831 PF03692 Putative zinc- or iron-chelating domain Y11_10861 PF04279 Intracellular septation protein A Y11_10871 PF03061 Thioesterase superfamily Y11_10881 PF03544 Gram-negative bacterial TonB protein C-terminal Y11_10891 PF03795 YCII-related domain Y11_10931 PF13396 Phospholipase_D-nuclease N-terminal Y11_10931 PF13091 PLD-like domain Y11_10941 PF04269 Protein of unknown function, DUF440 Y11_10951 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_10951 PF00005 ABC transporter Y11_10961 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_10961 PF00005 ABC transporter Y11_10971 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_10971 PF00528 Binding-protein-dependent transport system inner membrane component Y11_10981 PF00528 Binding-protein-dependent transport system inner membrane component Y11_10991 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_11001 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_11011 PF01914 MarC family integral membrane protein Y11_11021 PF00171 Aldehyde dehydrogenase family Y11_11021 PF00465 Iron-containing alcohol dehydrogenase Y11_11031 PF00265 Thymidine kinase Y11_11041 PF00816 H-NS histone family Y11_11051 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y11_11051 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y11_11051 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y11_11061 PF00072 Response regulator receiver domain Y11_11071 PF00072 Response regulator receiver domain Y11_11081 PF01734 Patatin-like phospholipase Y11_11121 PF02810 SEC-C motif Y11_11131 PF01842 ACT domain Y11_11131 PF00551 Formyl transferase Y11_11141 PF03466 LysR substrate binding domain Y11_11141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_11161 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_11171 PF00293 NUDIX domain Y11_11191 PF01131 DNA topoisomerase Y11_11191 PF01751 Toprim domain Y11_11201 PF00586 AIR synthase related protein, N-terminal domain Y11_11201 PF02769 AIR synthase related protein, C-terminal domain Y11_11211 PF00881 Nitroreductase family Y11_11221 PF01343 Peptidase family S49 Y11_11231 PF17763 Glutaminase/Asparaginase C-terminal domain Y11_11231 PF00710 Asparaginase, N-terminal Y11_11241 PF00857 Isochorismatase family Y11_11261 PF01548 Transposase Y11_11261 PF02371 Transposase IS116/IS110/IS902 family Y11_11271 PF07023 Protein of unknown function (DUF1315) Y11_11281 PF01641 SelR domain Y11_11301 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y11_11301 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_11311 PF01263 Aldose 1-epimerase Y11_11321 PF06629 MltA-interacting protein MipA Y11_11331 PF08298 PrkA AAA domain Y11_11331 PF06798 PrkA serine protein kinase C-terminal domain Y11_11341 PF04285 Protein of unknown function (DUF444) Y11_11371 PF03466 LysR substrate binding domain Y11_11371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_11381 PF02678 Pirin Y11_11381 PF05726 Pirin C-terminal cupin domain Y11_11391 PF00563 EAL domain Y11_11391 PF00990 Diguanylate cyclase, GGDEF domain Y11_11391 PF13426 PAS domain Y11_11401 PF07690 Major Facilitator Superfamily Y11_11411 PF00842 Alanine racemase, C-terminal domain Y11_11411 PF01168 Alanine racemase, N-terminal domain Y11_11421 PF01266 FAD dependent oxidoreductase Y11_11441 PF04293 SpoVR like protein Y11_11451 PF00392 Bacterial regulatory proteins, gntR family Y11_11451 PF07840 FadR C-terminal domain Y11_11471 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Y11_11491 PF02600 Disulfide bond formation protein DsbB Y11_11521 PF01548 Transposase Y11_11521 PF02371 Transposase IS116/IS110/IS902 family Y11_11541 PF03692 Putative zinc- or iron-chelating domain Y11_11551 PF01557 Fumarylacetoacetate (FAA) hydrolase family Y11_11561 PF13406 Transglycosylase SLT domain Y11_11571 PF05166 YcgL domain Y11_11591 PF05209 Septum formation inhibitor MinC, N-terminal domain Y11_11591 PF03775 Septum formation inhibitor MinC, C-terminal domain Y11_11601 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y11_11611 PF03776 Septum formation topological specificity factor MinE Y11_11621 PF00570 HRDC domain Y11_11621 PF01612 3'-5' exonuclease Y11_11631 PF00501 AMP-binding enzyme Y11_11631 PF13193 AMP-binding enzyme C-terminal domain Y11_11641 PF03843 Outer membrane lipoprotein Slp family Y11_11651 PF00814 Glycoprotease family Y11_11661 PF04851 Type III restriction enzyme, res subunit Y11_11661 PF13307 Helicase C-terminal domain Y11_11671 PF01042 Endoribonuclease L-PSP Y11_11681 PF00893 Small Multidrug Resistance protein Y11_11691 PF00893 Small Multidrug Resistance protein Y11_11711 PF01081 KDPG and KHG aldolase Y11_11721 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Y11_11721 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Y11_11731 PF01418 Helix-turn-helix domain, rpiR family Y11_11731 PF01380 SIS domain Y11_11741 PF02887 Pyruvate kinase, alpha/beta domain Y11_11741 PF00224 Pyruvate kinase, barrel domain Y11_11761 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_11771 PF08525 Opacity-associated protein A N-terminal motif Y11_11771 PF01476 LysM domain Y11_11771 PF01551 Peptidase family M23 Y11_11781 PF01297 Zinc-uptake complex component A periplasmic Y11_11791 PF00005 ABC transporter Y11_11801 PF00950 ABC 3 transport family Y11_11811 PF00854 POT family Y11_11821 PF17864 RuvB AAA lid domain Y11_11821 PF05496 Holliday junction DNA helicase RuvB P-loop domain Y11_11821 PF05491 RuvB C-terminal winged helix domain Y11_11831 PF01330 RuvA N terminal domain Y11_11831 PF07499 RuvA, C-terminal domain Y11_11841 PF02075 Crossover junction endodeoxyribonuclease RuvC Y11_11851 PF01709 Transcriptional regulator Y11_11861 PF00293 NUDIX domain Y11_11871 PF00152 tRNA synthetases class II (D, K and N) Y11_11871 PF01336 OB-fold nucleic acid binding domain Y11_11871 PF02938 GAD domain Y11_11901 PF00857 Isochorismatase family Y11_11911 PF01904 Protein of unknown function DUF72 Y11_11921 PF01124 MAPEG family Y11_11931 PF13649 Methyltransferase domain Y11_11941 PF08003 Protein of unknown function (DUF1698) Y11_11961 PF00455 DeoR C terminal sensor domain Y11_11961 PF08220 DeoR-like helix-turn-helix domain Y11_11971 PF08013 Tagatose 6 phosphate kinase Y11_11981 PF03830 PTS system sorbose subfamily IIB component Y11_11991 PF03609 PTS system sorbose-specific iic component Y11_12001 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_12011 PF03610 PTS system fructose IIA component Y11_12021 PF01380 SIS domain Y11_12031 PF01116 Fructose-bisphosphate aldolase class-II Y11_12051 PF01476 LysM domain Y11_12051 PF01551 Peptidase family M23 Y11_12121 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Y11_12131 PF05962 HutD Y11_12141 PF01979 Amidohydrolase family Y11_12151 PF00392 Bacterial regulatory proteins, gntR family Y11_12151 PF07702 UTRA domain Y11_12161 PF01979 Amidohydrolase family Y11_12191 PF13333 Integrase core domain Y11_12191 PF00665 Integrase core domain Y11_12191 PF13276 HTH-like domain Y11_12201 PF00267 Gram-negative porin Y11_12211 PF01548 Transposase Y11_12211 PF02371 Transposase IS116/IS110/IS902 family Y11_12221 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Y11_12231 PF04996 Succinylarginine dihydrolase Y11_12241 PF04996 Succinylarginine dihydrolase Y11_12251 PF00171 Aldehyde dehydrogenase family Y11_12261 PF04958 Arginine N-succinyltransferase beta subunit Y11_12271 PF00202 Aminotransferase class-III Y11_12281 PF00155 Aminotransferase class I and II Y11_12281 PF00392 Bacterial regulatory proteins, gntR family Y11_12291 PF01654 Cytochrome bd terminal oxidase subunit I Y11_12301 PF02322 Cytochrome bd terminal oxidase subunit II Y11_12321 PF00672 HAMP domain Y11_12321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_12321 PF07730 Histidine kinase Y11_12321 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Y11_12331 PF03466 LysR substrate binding domain Y11_12331 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_12341 PF01548 Transposase Y11_12341 PF02371 Transposase IS116/IS110/IS902 family Y11_12351 PF07690 Major Facilitator Superfamily Y11_12371 PF01699 Sodium/calcium exchanger protein Y11_12381 PF03023 Lipid II flippase MurJ Y11_12391 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_12401 PF04337 Protein of unknown function, DUF480 Y11_12411 PF13302 Acetyltransferase (GNAT) domain Y11_12431 PF07690 Major Facilitator Superfamily Y11_12441 PF07273 Protein of unknown function (DUF1439) Y11_12451 PF02613 Nitrate reductase delta subunit Y11_12461 PF02811 PHP domain Y11_12471 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_12481 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_12491 PF00990 Diguanylate cyclase, GGDEF domain Y11_12501 PF01740 STAS domain Y11_12501 PF00916 Sulfate permease family Y11_12511 PF00793 DAHP synthetase I family Y11_12521 PF13369 Transglutaminase-like superfamily Y11_12531 PF04247 Invasion gene expression up-regulator, SirB Y11_12541 PF13847 Methyltransferase domain Y11_12541 PF17827 PrmC N-terminal domain Y11_12551 PF03462 PCRF domain Y11_12551 PF00472 RF-1 domain Y11_12561 PF01488 Shikimate / quinate 5-dehydrogenase Y11_12561 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Y11_12561 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Y11_12571 PF03550 Outer membrane lipoprotein LolB Y11_12581 PF00288 GHMP kinases N terminal domain Y11_12581 PF08544 GHMP kinases C terminal Y11_12591 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Y11_12591 PF14572 Phosphoribosyl synthetase-associated domain Y11_12601 PF10762 Protein of unknown function (DUF2583) Y11_12621 PF01195 Peptidyl-tRNA hydrolase Y11_12641 PF01926 50S ribosome-binding GTPase Y11_12641 PF06071 Protein of unknown function (DUF933) Y11_12651 PF00144 Beta-lactamase Y11_12661 PF03466 LysR substrate binding domain Y11_12661 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_12671 PF04391 Protein of unknown function (DUF533) Y11_12691 PF00561 alpha/beta hydrolase fold Y11_12701 PF00959 Phage lysozyme Y11_12711 PF06530 Phage antitermination protein Q Y11_12731 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_12751 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_12751 PF03466 LysR substrate binding domain Y11_12771 PF01527 Transposase Y11_12931 PF07484 Phage Tail Collar Domain Y11_12941 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Y11_12961 PF04221 RelB antitoxin Y11_13011 PF04754 Putative transposase, YhgA-like Y11_13031 PF01695 IstB-like ATP binding protein Y11_13041 PF00665 Integrase core domain Y11_13051 PF00872 Transposase, Mutator family Y11_13061 PF00665 Integrase core domain Y11_13091 PF02899 Phage integrase, N-terminal SAM-like domain Y11_13091 PF00589 Phage integrase family Y11_13111 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_13111 PF00533 BRCA1 C Terminus (BRCT) domain Y11_13111 PF12826 Helix-hairpin-helix motif Y11_13111 PF01653 NAD-dependent DNA ligase adenylation domain Y11_13111 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Y11_13121 PF16452 Bacteriophage CI repressor C-terminal domain Y11_13121 PF07022 Bacteriophage CI repressor helix-turn-helix domain Y11_13141 PF06892 Phage regulatory protein CII (CP76) Y11_13181 PF05840 Bacteriophage replication gene A protein (GPA) Y11_13511 PF04606 Ogr/Delta-like zinc finger Y11_13531 PF01066 CDP-alcohol phosphatidyltransferase Y11_13541 PF08459 UvrC Helix-hairpin-helix N-terminal Y11_13541 PF01541 GIY-YIG catalytic domain Y11_13541 PF02151 UvrB/uvrC motif Y11_13551 PF00072 Response regulator receiver domain Y11_13551 PF00196 Bacterial regulatory proteins, luxR family Y11_13561 PF10769 Protein of unknown function (DUF2594) Y11_13571 PF06942 GlpM protein Y11_13591 PF00128 Alpha amylase, catalytic domain Y11_13591 PF02806 Alpha amylase, C-terminal all-beta domain Y11_13621 PF08241 Methyltransferase domain Y11_13641 PF01527 Transposase Y11_13651 PF00324 Amino acid permease Y11_13661 PF00440 Bacterial regulatory proteins, tetR family Y11_13661 PF08362 YcdC-like protein, C-terminal region Y11_13681 PF00296 Luciferase-like monooxygenase Y11_13691 PF00857 Isochorismatase family Y11_13701 PF01042 Endoribonuclease L-PSP Y11_13711 PF12697 Alpha/beta hydrolase family Y11_13721 PF12697 Alpha/beta hydrolase family Y11_13731 PF00881 Nitroreductase family Y11_13741 PF01613 Flavin reductase like domain Y11_13751 PF00860 Permease family Y11_13761 PF00860 Permease family Y11_13781 PF01344 Kelch motif Y11_13801 PF03358 NADPH-dependent FMN reductase Y11_13821 PF04261 Dyp-type peroxidase family Y11_13831 PF13473 Cupredoxin-like domain Y11_13831 PF09375 Imelysin Y11_13841 PF03239 Iron permease FTR1 family Y11_13861 PF05638 Type VI secretion system effector, Hcp Y11_13901 PF00474 Sodium:solute symporter family Y11_13911 PF00171 Aldehyde dehydrogenase family Y11_13911 PF14850 DNA-binding domain of Proline dehydrogenase Y11_13911 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Y11_13911 PF01619 Proline dehydrogenase Y11_13971 PF00291 Pyridoxal-phosphate dependent enzyme Y11_13991 PF02899 Phage integrase, N-terminal SAM-like domain Y11_14001 PF04542 Sigma-70 region 2 Y11_14001 PF04539 Sigma-70 region 3 Y11_14001 PF04545 Sigma-70, region 4 Y11_14021 PF00669 Bacterial flagellin N-terminal helical region Y11_14021 PF00700 Bacterial flagellin C-terminal helical region Y11_14021 PF08884 Flagellin D3 domain Y11_14041 PF08884 Flagellin D3 domain Y11_14041 PF00669 Bacterial flagellin N-terminal helical region Y11_14041 PF00700 Bacterial flagellin C-terminal helical region Y11_14061 PF00700 Bacterial flagellin C-terminal helical region Y11_14061 PF00669 Bacterial flagellin N-terminal helical region Y11_14061 PF08884 Flagellin D3 domain Y11_14071 PF02465 Flagellar hook-associated protein 2 N-terminus Y11_14071 PF07195 Flagellar hook-associated protein 2 C-terminus Y11_14071 PF07196 Flagellin hook IN motif Y11_14081 PF02561 Flagellar protein FliS Y11_14091 PF05400 Flagellar protein FliT Y11_14101 PF12833 Helix-turn-helix domain Y11_14111 PF01966 HD domain Y11_14121 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_14151 PF06183 DinI-like family Y11_14181 PF00589 Phage integrase family Y11_14181 PF12167 Arm DNA-binding domain Y11_14191 PF02049 Flagellar hook-basal body complex protein FliE Y11_14201 PF08345 Flagellar M-ring protein C-terminal Y11_14201 PF01514 Secretory protein of YscJ/FliF family Y11_14211 PF01706 FliG C-terminal domain Y11_14211 PF14841 FliG middle domain Y11_14211 PF14842 FliG N-terminal domain Y11_14221 PF02108 Flagellar assembly protein FliH Y11_14231 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_14231 PF18269 T3SS EscN ATPase C-terminal domain Y11_14241 PF02050 Flagellar FliJ protein Y11_14251 PF02120 Flagellar hook-length control protein FliK Y11_14261 PF03748 Flagellar basal body-associated protein FliL Y11_14271 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_14271 PF02154 Flagellar motor switch protein FliM Y11_14281 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_14281 PF16973 Flagellar motor switch protein FliN N-terminal Y11_14291 PF04347 Flagellar biosynthesis protein, FliO Y11_14301 PF00813 FliP family Y11_14311 PF01313 Bacterial export proteins, family 3 Y11_14321 PF01311 Bacterial export proteins, family 1 Y11_14331 PF00669 Bacterial flagellin N-terminal helical region Y11_14351 PF00460 Flagella basal body rod protein Y11_14351 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_14361 PF10135 Rod binding protein Y11_14361 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Y11_14371 PF02119 Flagellar P-ring protein Y11_14381 PF02107 Flagellar L-ring protein Y11_14391 PF00460 Flagella basal body rod protein Y11_14391 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_14401 PF00460 Flagella basal body rod protein Y11_14401 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_14411 PF07559 Flagellar basal body protein FlaE Y11_14411 PF00460 Flagella basal body rod protein Y11_14411 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_14421 PF03963 Flagellar hook capping protein - N-terminal region Y11_14421 PF13861 FlgD Tudor-like domain Y11_14421 PF13860 FlgD Ig-like domain Y11_14431 PF00460 Flagella basal body rod protein Y11_14431 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_14441 PF00460 Flagella basal body rod protein Y11_14451 PF13144 Chaperone for flagella basal body P-ring formation Y11_14451 PF17656 FlgA N-terminal domain Y11_14461 PF04316 Anti-sigma-28 factor, FlgM Y11_14471 PF05130 FlgN protein Y11_14481 PF02369 Bacterial Ig-like domain (group 1) Y11_14481 PF11924 Inverse autotransporter, beta-domain Y11_14481 PF07979 Intimin C-type lectin domain Y11_14481 PF09134 Invasin, domain 3 Y11_14491 PF01548 Transposase Y11_14491 PF02371 Transposase IS116/IS110/IS902 family Y11_14511 PF06366 Flagellar protein FlhE Y11_14521 PF00771 FHIPEP family Y11_14531 PF01312 FlhB HrpN YscU SpaS Family Y11_14551 PF04344 Chemotaxis phosphatase, CheZ Y11_14561 PF00072 Response regulator receiver domain Y11_14571 PF00072 Response regulator receiver domain Y11_14571 PF01339 CheB methylesterase Y11_14581 PF03705 CheR methyltransferase, all-alpha domain Y11_14581 PF01739 CheR methyltransferase, SAM binding domain Y11_14591 PF02203 Tar ligand binding domain homologue Y11_14591 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_14591 PF00672 HAMP domain Y11_14601 PF00672 HAMP domain Y11_14601 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_14601 PF02203 Tar ligand binding domain homologue Y11_14621 PF01584 CheW-like domain Y11_14641 PF02895 Signal transducing histidine kinase, homodimeric domain Y11_14641 PF01584 CheW-like domain Y11_14641 PF01627 Hpt domain Y11_14641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_14641 PF09078 CheY binding Y11_14651 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y11_14651 PF00691 OmpA family Y11_14661 PF01618 MotA/TolQ/ExbB proton channel family Y11_14681 PF05280 Flagellar transcriptional activator (FlhC) Y11_14691 PF05247 Flagellar transcriptional activator (FlhD) Y11_14701 PF00582 Universal stress protein family Y11_14711 PF00107 Zinc-binding dehydrogenase Y11_14711 PF16884 N-terminal domain of oxidoreductase Y11_14721 PF00690 Cation transporter/ATPase, N-terminus Y11_14721 PF00689 Cation transporting ATPase, C-terminus Y11_14731 PF02308 MgtC family Y11_14761 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_14761 PF02203 Tar ligand binding domain homologue Y11_14761 PF00672 HAMP domain Y11_14771 PF10781 Dextransucrase DSRB Y11_14791 PF00313 'Cold-shock' DNA-binding domain Y11_14801 PF00356 Bacterial regulatory proteins, lacI family Y11_14811 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Y11_14811 PF02837 Glycosyl hydrolases family 2, sugar binding domain Y11_14811 PF00703 Glycosyl hydrolases family 2 Y11_14811 PF02929 Beta galactosidase small chain Y11_14811 PF16353 Domain of unknown function(DUF4981) Y11_14821 PF00872 Transposase, Mutator family Y11_14831 PF00698 Acyl transferase domain Y11_14831 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_14831 PF16197 Ketoacyl-synthetase C-terminal extension Y11_14831 PF00550 Phosphopantetheine attachment site Y11_14831 PF00107 Zinc-binding dehydrogenase Y11_14831 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_14831 PF08240 Alcohol dehydrogenase GroES-like domain Y11_14831 PF08659 KR domain Y11_14831 PF14765 Polyketide synthase dehydratase Y11_14841 PF10777 Inner membrane protein YlaC Y11_14881 PF14001 YdfZ protein Y11_14891 PF00328 Histidine phosphatase superfamily (branch 2) Y11_14901 PF00483 Nucleotidyl transferase Y11_14931 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_14941 PF13954 PapC N-terminal domain Y11_14941 PF13953 PapC C-terminal domain Y11_14941 PF00577 Outer membrane usher protein Y11_14981 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_14981 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_15001 PF06167 Glucose-regulated metallo-peptidase M90 Y11_15011 PF13356 Arm DNA-binding domain Y11_15011 PF00589 Phage integrase family Y11_15021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_15021 PF03466 LysR substrate binding domain Y11_15031 PF02811 PHP domain Y11_15041 PF01695 IstB-like ATP binding protein Y11_15051 PF00665 Integrase core domain Y11_15061 PF08401 Domain of unknown function (DUF1738) Y11_15061 PF18818 Metallopeptidase superfamily domain Y11_15131 PF00072 Response regulator receiver domain Y11_15131 PF00196 Bacterial regulatory proteins, luxR family Y11_15141 PF00989 PAS fold Y11_15141 PF00072 Response regulator receiver domain Y11_15141 PF01627 Hpt domain Y11_15141 PF00512 His Kinase A (phospho-acceptor) domain Y11_15141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_15141 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_15161 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_15161 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_15171 PF13953 PapC C-terminal domain Y11_15171 PF13954 PapC N-terminal domain Y11_15171 PF00577 Outer membrane usher protein Y11_15191 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_15191 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_15221 PF00849 RNA pseudouridylate synthase Y11_15231 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Y11_15241 PF00381 PTS HPr component phosphorylation site Y11_15241 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_15251 PF00083 Sugar (and other) transporter Y11_15271 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Y11_15271 PF01648 4'-phosphopantetheinyl transferase superfamily Y11_15281 PF03480 Bacterial extracellular solute-binding protein, family 7 Y11_15301 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Y11_15311 PF00939 Sodium:sulfate symporter transmembrane region Y11_15321 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y11_15331 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Y11_15331 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Y11_15341 PF04223 Citrate lyase, alpha subunit (CitF) Y11_15351 PF03328 HpcH/HpaI aldolase/citrate lyase family Y11_15361 PF06857 Malonate decarboxylase delta subunit (MdcD) Y11_15371 PF08218 Citrate lyase ligase C-terminal domain Y11_15381 PF17203 Single cache domain 3 Y11_15381 PF00989 PAS fold Y11_15381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_15381 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Y11_15391 PF12431 Transcriptional regulator Y11_15391 PF00072 Response regulator receiver domain Y11_15401 PF00072 Response regulator receiver domain Y11_15401 PF00196 Bacterial regulatory proteins, luxR family Y11_15411 PF05231 MASE1 Y11_15411 PF07730 Histidine kinase Y11_15411 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_15421 PF07690 Major Facilitator Superfamily Y11_15441 PF00528 Binding-protein-dependent transport system inner membrane component Y11_15451 PF00005 ABC transporter Y11_15451 PF08402 TOBE domain Y11_15461 PF02558 Ketopantoate reductase PanE/ApbA Y11_15461 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y11_15481 PF00155 Aminotransferase class I and II Y11_15481 PF00392 Bacterial regulatory proteins, gntR family Y11_15501 PF00072 Response regulator receiver domain Y11_15501 PF01584 CheW-like domain Y11_15511 PF00144 Beta-lactamase Y11_15521 PF08220 DeoR-like helix-turn-helix domain Y11_15521 PF00455 DeoR C terminal sensor domain Y11_15541 PF02581 Thiamine monophosphate synthase Y11_15571 PF01554 MatE Y11_15581 PF00764 Arginosuccinate synthase Y11_15631 PF04717 Type VI secretion system, phage-baseplate injector Y11_15721 PF13953 PapC C-terminal domain Y11_15721 PF00577 Outer membrane usher protein Y11_15721 PF13954 PapC N-terminal domain Y11_15731 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_15731 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_15751 PF00419 Fimbrial protein Y11_15761 PF17871 AAA lid domain Y11_15761 PF07724 AAA domain (Cdc48 subfamily) Y11_15761 PF00004 ATPase family associated with various cellular activities (AAA) Y11_15761 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_15881 PF03825 Nucleoside H+ symporter Y11_15901 PF02277 Phosphoribosyltransferase Y11_15911 PF00300 Histidine phosphatase superfamily (branch 1) Y11_15921 PF02654 Cobalamin-5-phosphate synthase Y11_15931 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Y11_15941 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y11_15951 PF00005 ABC transporter Y11_15961 PF02361 Cobalt transport protein Y11_15971 PF02553 Cobalt transport protein component CbiN Y11_15981 PF01891 Cobalt uptake substrate-specific transmembrane region Y11_15991 PF01891 Cobalt uptake substrate-specific transmembrane region Y11_16001 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_16011 PF06180 Cobalt chelatase (CbiK) Y11_16021 PF02571 Precorrin-6x reductase CbiJ/CobK Y11_16031 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_16041 PF11760 Cobalamin synthesis G N-terminal Y11_16041 PF01890 Cobalamin synthesis G C-terminus Y11_16041 PF11761 Cobalamin biosynthesis central region Y11_16051 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_16061 PF05175 Methyltransferase small domain Y11_16071 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_16081 PF01888 CbiD Y11_16091 PF02570 Precorrin-8X methylmutase Y11_16101 PF03186 CobD/Cbib protein Y11_16111 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Y11_16111 PF07685 CobB/CobQ-like glutamine amidotransferase domain Y11_16131 PF10114 Sensory domain found in PocR Y11_16131 PF12833 Helix-turn-helix domain Y11_16141 PF00230 Major intrinsic protein Y11_16151 PF00936 BMC domain Y11_16161 PF00936 BMC domain Y11_16171 PF02286 Dehydratase large subunit Y11_16181 PF02288 Dehydratase medium subunit Y11_16191 PF02287 Dehydratase small subunit Y11_16201 PF18427 DD-reactivating factor swiveling domain Y11_16201 PF08841 Diol dehydratase reactivase ATPase-like domain Y11_16221 PF00936 BMC domain Y11_16241 PF06130 Phosphate propanoyltransferase Y11_16261 PF03319 Ethanolamine utilisation protein EutN/carboxysome Y11_16271 PF01923 Cobalamin adenosyltransferase Y11_16281 PF00171 Aldehyde dehydrogenase family Y11_16291 PF00465 Iron-containing alcohol dehydrogenase Y11_16301 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Y11_16301 PF13237 4Fe-4S dicluster domain Y11_16301 PF10531 SLBB domain Y11_16301 PF13375 RnfC Barrel sandwich hybrid domain Y11_16321 PF00936 BMC domain Y11_16331 PF10662 Ethanolamine utilisation - propanediol utilisation Y11_16341 PF00871 Acetokinase family Y11_16351 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_16351 PF14824 Sirohaem biosynthesis protein central Y11_16351 PF10414 Sirohaem synthase dimerisation region Y11_16361 PF00155 Aminotransferase class I and II Y11_16371 PF00288 GHMP kinases N terminal domain Y11_16381 PF13407 Periplasmic binding protein domain Y11_16401 PF02653 Branched-chain amino acid transport system / permease component Y11_16411 PF02653 Branched-chain amino acid transport system / permease component Y11_16421 PF04363 Protein of unknown function (DUF496) Y11_16431 PF04632 Fusaric acid resistance protein family Y11_16441 PF00550 Phosphopantetheine attachment site Y11_16441 PF07993 Male sterility protein Y11_16441 PF00501 AMP-binding enzyme Y11_16451 PF00929 Exonuclease Y11_16451 PF08411 Exonuclease C-terminal Y11_16461 PF13520 Amino acid permease Y11_16471 PF00465 Iron-containing alcohol dehydrogenase Y11_16481 PF00005 ABC transporter Y11_16491 PF00005 ABC transporter Y11_16501 PF02653 Branched-chain amino acid transport system / permease component Y11_16511 PF01370 NAD dependent epimerase/dehydratase family Y11_16521 PF01634 ATP phosphoribosyltransferase Y11_16521 PF08029 HisG, C-terminal domain Y11_16531 PF00815 Histidinol dehydrogenase Y11_16541 PF00155 Aminotransferase class I and II Y11_16551 PF00475 Imidazoleglycerol-phosphate dehydratase Y11_16561 PF00117 Glutamine amidotransferase class-I Y11_16571 PF00977 Histidine biosynthesis protein Y11_16581 PF00977 Histidine biosynthesis protein Y11_16591 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Y11_16591 PF01502 Phosphoribosyl-AMP cyclohydrolase Y11_16601 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Y11_16601 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Y11_16621 PF00483 Nucleotidyl transferase Y11_16631 PF00483 Nucleotidyl transferase Y11_16711 PF00535 Glycosyl transferase family 2 Y11_16711 PF00534 Glycosyl transferases group 1 Y11_16721 PF01370 NAD dependent epimerase/dehydratase family Y11_16731 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Y11_16741 PF00005 ABC transporter Y11_16751 PF01061 ABC-2 type transporter Y11_16771 PF00535 Glycosyl transferase family 2 Y11_16781 PF00483 Nucleotidyl transferase Y11_16811 PF03471 Transporter associated domain Y11_16811 PF03741 Integral membrane protein TerC family Y11_16811 PF00571 CBS domain Y11_16821 PF03606 C4-dicarboxylate anaerobic carrier Y11_16831 PF05170 AsmA family Y11_16841 PF00692 dUTPase Y11_16851 PF00485 Phosphoribulokinase / Uridine kinase family Y11_16861 PF10609 NUBPL iron-transfer P-loop NTPase Y11_16881 PF09334 tRNA synthetases class I (M) Y11_16881 PF01588 Putative tRNA binding domain Y11_16921 PF07690 Major Facilitator Superfamily Y11_16931 PF03788 LrgA family Y11_16941 PF04172 LrgB-like family Y11_16951 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_16951 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_16961 PF00390 Malic enzyme, N-terminal domain Y11_16961 PF03949 Malic enzyme, NAD binding domain Y11_16971 PF02698 DUF218 domain Y11_16981 PF01455 HupF/HypC family Y11_16991 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Y11_17001 PF00037 4Fe-4S binding domain Y11_17001 PF12798 4Fe-4S binding domain Y11_17011 PF00361 Proton-conducting membrane transporter Y11_17021 PF00146 NADH dehydrogenase Y11_17031 PF00146 NADH dehydrogenase Y11_17041 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_17041 PF00361 Proton-conducting membrane transporter Y11_17051 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Y11_17061 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Y11_17061 PF00361 Proton-conducting membrane transporter Y11_17071 PF00374 Nickel-dependent hydrogenase Y11_17071 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Y11_17071 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Y11_17081 PF12838 4Fe-4S dicluster domain Y11_17091 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_17101 PF07450 Formate hydrogenlyase maturation protein HycH Y11_17111 PF01750 Hydrogenase maturation protease Y11_17121 PF13247 4Fe-4S dicluster domain Y11_17121 PF12800 4Fe-4S binding domain Y11_17131 PF01568 Molydopterin dinucleotide binding domain Y11_17131 PF00384 Molybdopterin oxidoreductase Y11_17131 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_17141 PF00158 Sigma-54 interaction domain Y11_17141 PF01590 GAF domain Y11_17151 PF02653 Branched-chain amino acid transport system / permease component Y11_17161 PF00005 ABC transporter Y11_17171 PF13407 Periplasmic binding protein domain Y11_17181 PF00356 Bacterial regulatory proteins, lacI family Y11_17201 PF04235 Protein of unknown function (DUF418) Y11_17211 PF01227 GTP cyclohydrolase I Y11_17221 PF06779 Uncharacterised MFS-type transporter YbfB Y11_17231 PF03466 LysR substrate binding domain Y11_17231 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_17241 PF08240 Alcohol dehydrogenase GroES-like domain Y11_17241 PF00107 Zinc-binding dehydrogenase Y11_17251 PF00756 Putative esterase Y11_17291 PF00005 ABC transporter Y11_17291 PF02687 FtsX-like permease family Y11_17291 PF12704 MacB-like periplasmic core domain Y11_17321 PF03453 MoeA N-terminal region (domain I and II) Y11_17321 PF03454 MoeA C-terminal region (domain IV) Y11_17321 PF00994 Probable molybdopterin binding domain Y11_17331 PF00899 ThiF family Y11_17351 PF02371 Transposase IS116/IS110/IS902 family Y11_17351 PF01548 Transposase Y11_17361 PF12848 ABC transporter Y11_17361 PF00005 ABC transporter Y11_17401 PF13505 Outer membrane protein beta-barrel domain Y11_17411 PF00892 EamA-like transporter family Y11_17431 PF02469 Fasciclin domain Y11_17461 PF13847 Methyltransferase domain Y11_17471 PF00210 Ferritin-like domain Y11_17481 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y11_17501 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_17511 PF00528 Binding-protein-dependent transport system inner membrane component Y11_17521 PF00005 ABC transporter Y11_17531 PF08447 PAS fold Y11_17531 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_17531 PF13426 PAS domain Y11_17551 PF05971 RNA methyltransferase Y11_17611 PF02885 Glycosyl transferase family, helical bundle domain Y11_17621 PF00230 Major intrinsic protein Y11_17631 PF06733 DEAD_2 Y11_17631 PF13307 Helicase C-terminal domain Y11_17651 PF00267 Gram-negative porin Y11_17671 PF00892 EamA-like transporter family Y11_17691 PF03466 LysR substrate binding domain Y11_17691 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_17721 PF00528 Binding-protein-dependent transport system inner membrane component Y11_17731 PF00005 ABC transporter Y11_17741 PF00528 Binding-protein-dependent transport system inner membrane component Y11_17751 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_17771 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_17771 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_17781 PF00581 Rhodanese-like domain Y11_17791 PF00005 ABC transporter Y11_17801 PF00005 ABC transporter Y11_17811 PF02653 Branched-chain amino acid transport system / permease component Y11_17821 PF02653 Branched-chain amino acid transport system / permease component Y11_17841 PF07308 Protein of unknown function (DUF1456) Y11_17851 PF00528 Binding-protein-dependent transport system inner membrane component Y11_17861 PF00528 Binding-protein-dependent transport system inner membrane component Y11_17881 PF00005 ABC transporter Y11_17891 PF04226 Transglycosylase associated protein Y11_17911 PF01844 HNH endonuclease Y11_17921 PF01928 CYTH domain Y11_17931 PF09330 D-lactate dehydrogenase, membrane binding Y11_17931 PF01565 FAD binding domain Y11_17941 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_17961 PF00571 CBS domain Y11_17961 PF01769 Divalent cation transporter Y11_17961 PF03448 MgtE intracellular N domain Y11_17981 PF01207 Dihydrouridine synthase (Dus) Y11_17991 PF00271 Helicase conserved C-terminal domain Y11_17991 PF00270 DEAD/DEAH box helicase Y11_18001 PF00440 Bacterial regulatory proteins, tetR family Y11_18001 PF09209 Tetracyclin repressor-like, C-terminal domain Y11_18011 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_18021 PF00005 ABC transporter Y11_18051 PF01027 Inhibitor of apoptosis-promoting Bax1 Y11_18061 PF02391 MoaE protein Y11_18071 PF02597 ThiS family Y11_18081 PF01967 MoaC family Y11_18091 PF04055 Radical SAM superfamily Y11_18091 PF06463 Molybdenum Cofactor Synthesis C Y11_18101 PF01933 Uncharacterised protein family UPF0052 Y11_18111 PF09905 DNA-binding protein VF530 Y11_18121 PF02151 UvrB/uvrC motif Y11_18121 PF17757 UvrB interaction domain Y11_18121 PF12344 Ultra-violet resistance protein B Y11_18121 PF04851 Type III restriction enzyme, res subunit Y11_18121 PF00271 Helicase conserved C-terminal domain Y11_18141 PF00005 ABC transporter Y11_18161 PF08241 Methyltransferase domain Y11_18171 PF00155 Aminotransferase class I and II Y11_18181 PF04055 Radical SAM superfamily Y11_18181 PF06968 Biotin and Thiamin Synthesis associated domain Y11_18191 PF00202 Aminotransferase class-III Y11_18201 PF10282 Lactonase, 7-bladed beta-propeller Y11_18221 PF00005 ABC transporter Y11_18221 PF03459 TOBE domain Y11_18231 PF00528 Binding-protein-dependent transport system inner membrane component Y11_18261 PF10766 Multidrug efflux pump-associated protein AcrZ Y11_18271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_18271 PF03459 TOBE domain Y11_18291 PF00005 ABC transporter Y11_18311 PF16363 GDP-mannose 4,6 dehydratase Y11_18321 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Y11_18321 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Y11_18331 PF10509 Galactokinase galactose-binding signature Y11_18331 PF08544 GHMP kinases C terminal Y11_18331 PF00288 GHMP kinases N terminal domain Y11_18341 PF01263 Aldose 1-epimerase Y11_18361 PF00082 Subtilase family Y11_18381 PF01223 DNA/RNA non-specific endonuclease Y11_18401 PF00300 Histidine phosphatase superfamily (branch 1) Y11_18411 PF00793 DAHP synthetase I family Y11_18421 PF01545 Cation efflux family Y11_18431 PF04973 Nicotinamide mononucleotide transporter Y11_18441 PF02445 Quinolinate synthetase A protein Y11_18451 PF13174 Tetratricopeptide repeat Y11_18451 PF16331 TolA binding protein trimerisation Y11_18461 PF00691 OmpA family Y11_18471 PF07676 WD40-like Beta Propeller Repeat Y11_18471 PF04052 TolB amino-terminal domain Y11_18481 PF06519 TolA C-terminal Y11_18481 PF06519 TolA C-terminal Y11_18491 PF02472 Biopolymer transport protein ExbD/TolR Y11_18501 PF01618 MotA/TolQ/ExbB proton channel family Y11_18511 PF03061 Thioesterase superfamily Y11_18521 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) Y11_18531 PF08173 Membrane bound YbgT-like protein Y11_18541 PF02322 Cytochrome bd terminal oxidase subunit II Y11_18551 PF01654 Cytochrome bd terminal oxidase subunit I Y11_18561 PF02872 5'-nucleotidase, C-terminal domain Y11_18561 PF00149 Calcineurin-like phosphoesterase Y11_18571 PF02629 CoA binding domain Y11_18571 PF00549 CoA-ligase Y11_18581 PF08442 ATP-grasp domain Y11_18581 PF00549 CoA-ligase Y11_18591 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y11_18591 PF02817 e3 binding domain Y11_18591 PF00364 Biotin-requiring enzyme Y11_18601 PF02779 Transketolase, pyrimidine binding domain Y11_18601 PF00676 Dehydrogenase E1 component Y11_18601 PF16078 2-oxoglutarate dehydrogenase N-terminus Y11_18601 PF16870 2-oxoglutarate dehydrogenase C-terminal Y11_18611 PF13085 2Fe-2S iron-sulfur cluster binding domain Y11_18621 PF00890 FAD binding domain Y11_18621 PF02910 Fumarate reductase flavoprotein C-term Y11_18631 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y11_18641 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Y11_18651 PF00285 Citrate synthase, C-terminal domain Y11_18661 PF01470 Pyroglutamyl peptidase Y11_18691 PF03746 LamB/YcsF family Y11_18701 PF02626 Carboxyltransferase domain, subdomain A and B Y11_18711 PF02682 Carboxyltransferase domain, subdomain C and D Y11_18721 PF01784 NIF3 (NGG1p interacting factor 3) Y11_18731 PF02112 cAMP phosphodiesterases class-II Y11_18741 PF00875 DNA photolyase Y11_18741 PF03441 FAD binding domain of DNA photolyase Y11_18751 PF08349 Protein of unknown function (DUF1722) Y11_18761 PF11647 Membrane Localization Domain Y11_18761 PF12146 Serine aminopeptidase, S33 Y11_18761 PF11713 Peptidase C80 family Y11_18761 PF16671 Actin cross-linking domain Y11_18761 PF07634 RtxA repeat Y11_18761 PF16671 Actin cross-linking domain Y11_18761 PF11647 Membrane Localization Domain Y11_18761 PF12146 Serine aminopeptidase, S33 Y11_18761 PF11713 Peptidase C80 family Y11_18761 PF07634 RtxA repeat Y11_18771 PF02794 RTX toxin acyltransferase family Y11_18791 PF10725 Protein of unknown function (DUF2517) Y11_18801 PF03814 Potassium-transporting ATPase A subunit Y11_18821 PF02669 K+-transporting ATPase, c chain Y11_18831 PF13492 GAF domain Y11_18831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_18831 PF00512 His Kinase A (phospho-acceptor) domain Y11_18831 PF02702 Osmosensitive K+ channel His kinase sensor domain Y11_18831 PF13493 Domain of unknown function (DUF4118) Y11_18841 PF00486 Transcriptional regulatory protein, C terminal Y11_18841 PF00072 Response regulator receiver domain Y11_18851 PF00892 EamA-like transporter family Y11_18871 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y11_18871 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y11_18871 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y11_18871 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y11_18881 PF03925 SeqA protein C-terminal domain Y11_18881 PF17206 SeqA protein N-terminal domain Y11_18891 PF12697 Alpha/beta hydrolase family Y11_18901 PF01402 Ribbon-helix-helix protein, copG family Y11_18911 PF02203 Tar ligand binding domain homologue Y11_18911 PF00672 HAMP domain Y11_18911 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_18921 PF00258 Flavodoxin Y11_18931 PF01475 Ferric uptake regulator family Y11_18941 PF03173 Putative carbohydrate binding domain Y11_18941 PF02838 Glycosyl hydrolase family 20, domain 2 Y11_18941 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain Y11_18941 PF00728 Glycosyl hydrolase family 20, catalytic domain Y11_18951 PF13982 YbfN-like lipoprotein Y11_18961 PF03573 outer membrane porin, OprD family Y11_18971 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Y11_18971 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_18981 PF02378 Phosphotransferase system, EIIC Y11_18981 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Y11_18981 PF00367 phosphotransferase system, EIIB Y11_18991 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Y11_19001 PF01979 Amidohydrolase family Y11_19011 PF01047 MarR family Y11_19011 PF00480 ROK family Y11_19031 PF13344 Haloacid dehalogenase-like hydrolase Y11_19041 PF00733 Asparagine synthase Y11_19041 PF13537 Glutamine amidotransferase domain Y11_19051 PF01494 FAD binding domain Y11_19061 PF04055 Radical SAM superfamily Y11_19061 PF01938 TRAM domain Y11_19061 PF00919 Uncharacterized protein family UPF0004 Y11_19071 PF02562 PhoH-like protein Y11_19081 PF02130 Uncharacterized protein family UPF0054 Y11_19091 PF03471 Transporter associated domain Y11_19091 PF00571 CBS domain Y11_19101 PF00795 Carbon-nitrogen hydrolase Y11_19121 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_19131 PF00528 Binding-protein-dependent transport system inner membrane component Y11_19141 PF00528 Binding-protein-dependent transport system inner membrane component Y11_19151 PF00005 ABC transporter Y11_19161 PF07295 Zinc-ribbon containing domain Y11_19181 PF00133 tRNA synthetases class I (I, L, M and V) Y11_19181 PF13603 Leucyl-tRNA synthetase, Domain 2 Y11_19181 PF08264 Anticodon-binding domain of tRNA Y11_19191 PF04390 Lipopolysaccharide-assembly Y11_19201 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Y11_19201 PF06144 DNA polymerase III, delta subunit Y11_19211 PF01467 Cytidylyltransferase-like Y11_19231 PF02590 Predicted SPOUT methyltransferase Y11_19241 PF00905 Penicillin binding protein transpeptidase domain Y11_19241 PF03717 Penicillin-binding Protein dimerisation domain Y11_19251 PF01098 Cell cycle protein Y11_19261 PF05036 Sporulation related domain Y11_19261 PF03330 Lytic transglycolase Y11_19271 PF07943 Penicillin-binding protein 5, C-terminal domain Y11_19271 PF00768 D-alanyl-D-alanine carboxypeptidase Y11_19281 PF04359 Protein of unknown function (DUF493) Y11_19291 PF03099 Biotin/lipoate A/B protein ligase family Y11_19301 PF04055 Radical SAM superfamily Y11_19301 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Y11_19311 PF02416 mttA/Hcf106 family Y11_19321 PF05230 MASE2 domain Y11_19321 PF00990 Diguanylate cyclase, GGDEF domain Y11_19331 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_19341 PF00313 'Cold-shock' DNA-binding domain Y11_19351 PF00313 'Cold-shock' DNA-binding domain Y11_19361 PF00196 Bacterial regulatory proteins, luxR family Y11_19381 PF00149 Calcineurin-like phosphoesterase Y11_19411 PF00664 ABC transporter transmembrane region Y11_19411 PF00005 ABC transporter Y11_19431 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y11_19441 PF00221 Aromatic amino acid lyase Y11_19451 PF08007 Cupin superfamily protein Y11_19481 PF00589 Phage integrase family Y11_19641 PF14659 Phage integrase, N-terminal SAM-like domain Y11_19641 PF00589 Phage integrase family Y11_19641 PF13356 Arm DNA-binding domain Y11_19651 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Y11_19651 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Y11_19671 PF01406 tRNA synthetases class I (C) catalytic domain Y11_19671 PF09190 DALR domain Y11_19681 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y11_19691 PF00149 Calcineurin-like phosphoesterase Y11_19701 PF00731 AIR carboxylase Y11_19711 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Y11_19711 PF02222 ATP-grasp domain Y11_19741 PF00005 ABC transporter Y11_19751 PF13472 GDSL-like Lipase/Acylhydrolase family Y11_19761 PF00106 short chain dehydrogenase Y11_19771 PF00085 Thioredoxin Y11_19781 PF01145 SPFH domain / Band 7 family Y11_19781 PF16200 C-terminal region of band_7 Y11_19791 PF01957 NfeD-like C-terminal, partner-binding Y11_19801 PF13411 MerR HTH family regulatory protein Y11_19811 PF00403 Heavy-metal-associated domain Y11_19821 PF01963 TraB family Y11_19831 PF04073 Aminoacyl-tRNA editing domain Y11_19841 PF02872 5'-nucleotidase, C-terminal domain Y11_19841 PF00149 Calcineurin-like phosphoesterase Y11_19861 PF07690 Major Facilitator Superfamily Y11_19891 PF02254 TrkA-N domain Y11_19891 PF00999 Sodium/hydrogen exchanger family Y11_19901 PF00294 pfkB family carbohydrate kinase Y11_19911 PF16363 GDP-mannose 4,6 dehydratase Y11_19921 PF00534 Glycosyl transferases group 1 Y11_19921 PF13439 Glycosyltransferase Family 4 Y11_19931 PF02719 Polysaccharide biosynthesis protein Y11_19941 PF00953 Glycosyl transferase family 4 Y11_19951 PF00534 Glycosyl transferases group 1 Y11_19951 PF13439 Glycosyltransferase Family 4 Y11_19961 PF00534 Glycosyl transferases group 1 Y11_19961 PF13439 Glycosyltransferase Family 4 Y11_19971 PF00535 Glycosyl transferase family 2 Y11_19981 PF01501 Glycosyl transferase family 8 Y11_19981 PF00535 Glycosyl transferase family 2 Y11_19991 PF01943 Polysaccharide biosynthesis protein Y11_20001 PF00762 Ferrochelatase Y11_20011 PF05191 Adenylate kinase, active site lid Y11_20031 PF00183 Hsp90 protein Y11_20031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_20041 PF13662 Toprim domain Y11_20041 PF02132 RecR protein Y11_20051 PF02575 YbaB/EbfC DNA-binding family Y11_20061 PF12170 DNA polymerase III tau subunit V interacting with alpha Y11_20061 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Y11_20061 PF12169 DNA polymerase III subunits gamma and tau domain III Y11_20071 PF00156 Phosphoribosyl transferase domain Y11_20101 PF10689 Protein of unknown function (DUF2496) Y11_20111 PF00924 Mechanosensitive ion channel Y11_20111 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_20111 PF12795 Mechanosensitive ion channel porin domain Y11_20121 PF02635 DsrE/DsrF-like family Y11_20131 PF08361 MAATS-type transcriptional repressor, C-terminal region Y11_20131 PF00440 Bacterial regulatory proteins, tetR family Y11_20141 PF00529 HlyD membrane-fusion protein of T1SS Y11_20141 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_20151 PF00873 AcrB/AcrD/AcrF family Y11_20211 PF01168 Alanine racemase, N-terminal domain Y11_20221 PF01676 Metalloenzyme superfamily Y11_20231 PF10941 Protein of unknown function DUF2620 Y11_20241 PF10797 Protein of unknown function Y11_20251 PF01197 Ribosomal protein L31 Y11_20261 PF00444 Ribosomal protein L36 Y11_20271 PF01297 Zinc-uptake complex component A periplasmic Y11_20281 PF00950 ABC 3 transport family Y11_20291 PF00005 ABC transporter Y11_20321 PF10757 Biofilm formation regulator YbaJ Y11_20331 PF05321 Haemolysin expression modulating protein Y11_20351 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_20361 PF09619 Type III secretion system lipoprotein chaperone (YscW) Y11_20381 PF00909 Ammonium Transporter Family Y11_20391 PF00543 Nitrogen regulatory protein P-II Y11_20401 PF00005 ABC transporter Y11_20401 PF00664 ABC transporter transmembrane region Y11_20411 PF00005 ABC transporter Y11_20411 PF00664 ABC transporter transmembrane region Y11_20421 PF01037 Lrp/AsnC ligand binding domain Y11_20421 PF13404 AsnC-type helix-turn-helix domain Y11_20451 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_20451 PF12793 Sugar transport-related sRNA regulator N-term Y11_20461 PF06508 Queuosine biosynthesis protein QueC Y11_20491 PF13145 PPIC-type PPIASE domain Y11_20511 PF00216 Bacterial DNA-binding protein Y11_20521 PF00004 ATPase family associated with various cellular activities (AAA) Y11_20521 PF05362 Lon protease (S16) C-terminal proteolytic domain Y11_20521 PF02190 ATP-dependent protease La (LON) substrate-binding domain Y11_20541 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_20541 PF06689 ClpX C4-type zinc finger Y11_20541 PF07724 AAA domain (Cdc48 subfamily) Y11_20551 PF00574 Clp protease Y11_20561 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_20561 PF05698 Bacterial trigger factor protein (TF) C-terminus Y11_20561 PF05697 Bacterial trigger factor protein (TF) Y11_20571 PF01722 BolA-like protein Y11_20581 PF03923 Uncharacterized lipoprotein Y11_20581 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_20591 PF07690 Major Facilitator Superfamily Y11_20601 PF03502 Nucleoside-specific channel-forming protein, Tsx Y11_20611 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Y11_20611 PF06481 COX Aromatic Rich Motif Y11_20621 PF00115 Cytochrome C and Quinol oxidase polypeptide I Y11_20631 PF00510 Cytochrome c oxidase subunit III Y11_20641 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Y11_20651 PF01040 UbiA prenyltransferase family Y11_20661 PF07690 Major Facilitator Superfamily Y11_20671 PF04461 Protein of unknown function (DUF520) Y11_20681 PF08546 Ketopantoate reductase PanE/ApbA C terminal Y11_20681 PF02558 Ketopantoate reductase PanE/ApbA Y11_20691 PF01965 DJ-1/PfpI family Y11_20701 PF02568 Thiamine biosynthesis protein (ThiI) Y11_20701 PF02926 THUMP domain Y11_20711 PF02609 Exonuclease VII small subunit Y11_20721 PF00348 Polyprenyl synthetase Y11_20731 PF02780 Transketolase, C-terminal domain Y11_20731 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Y11_20731 PF02779 Transketolase, pyrimidine binding domain Y11_20741 PF02371 Transposase IS116/IS110/IS902 family Y11_20741 PF01548 Transposase Y11_20751 PF04608 Phosphatidylglycerophosphatase A Y11_20761 PF00586 AIR synthase related protein, N-terminal domain Y11_20761 PF02769 AIR synthase related protein, C-terminal domain Y11_20771 PF01029 NusB family Y11_20781 PF00885 6,7-dimethyl-8-ribityllumazine synthase Y11_20791 PF01872 RibD C-terminal domain Y11_20791 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Y11_20801 PF03477 ATP cone domain Y11_20831 PF02371 Transposase IS116/IS110/IS902 family Y11_20831 PF01548 Transposase Y11_20841 PF07549 SecD/SecF GG Motif Y11_20841 PF02355 Protein export membrane protein Y11_20851 PF13721 SecD export protein N-terminal TM region Y11_20851 PF07549 SecD/SecF GG Motif Y11_20851 PF02355 Protein export membrane protein Y11_20861 PF02699 Preprotein translocase subunit Y11_20871 PF01702 Queuine tRNA-ribosyltransferase Y11_20891 PF01548 Transposase Y11_20891 PF02371 Transposase IS116/IS110/IS902 family Y11_20911 PF02547 Queuosine biosynthesis protein Y11_20931 PF04336 Acyl carrier protein phosphodiesterase Y11_20941 PF00578 AhpC/TSA family Y11_20941 PF10417 C-terminal domain of 1-Cys peroxiredoxin Y11_20981 PF00128 Alpha amylase, catalytic domain Y11_20981 PF02903 Alpha amylase, N-terminal ig-like domain Y11_20991 PF00324 Amino acid permease Y11_21001 PF05525 Branched-chain amino acid transport protein Y11_21011 PF12849 PBP superfamily domain Y11_21021 PF00512 His Kinase A (phospho-acceptor) domain Y11_21021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_21021 PF11808 Phosphate regulon sensor protein PhoR Y11_21021 PF00989 PAS fold Y11_21031 PF00486 Transcriptional regulatory protein, C terminal Y11_21031 PF00072 Response regulator receiver domain Y11_21041 PF00149 Calcineurin-like phosphoesterase Y11_21041 PF12320 Type 5 capsule protein repressor C-terminal domain Y11_21051 PF13476 AAA domain Y11_21061 PF00480 ROK family Y11_21071 PF04381 Putative exonuclease, RdgC Y11_21081 PF06865 Pyrimidine/purine nucleoside phosphorylase Y11_21101 PF01202 Shikimate kinase Y11_21111 PF07715 TonB-dependent Receptor Plug Domain Y11_21111 PF00593 TonB dependent receptor Y11_21171 PF08241 Methyltransferase domain Y11_21211 PF10091 Putative glucoamylase Y11_21211 PF06165 Glycosyltransferase family 36 Y11_21211 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Y11_21221 PF07317 Flagellar regulator YcgR Y11_21221 PF07238 PilZ domain Y11_21231 PF02056 Family 4 glycosyl hydrolase Y11_21231 PF11975 Family 4 glycosyl hydrolase C-terminal domain Y11_21241 PF00367 phosphotransferase system, EIIB Y11_21241 PF02378 Phosphotransferase system, EIIC Y11_21251 PF07702 UTRA domain Y11_21251 PF00392 Bacterial regulatory proteins, gntR family Y11_21261 PF00171 Aldehyde dehydrogenase family Y11_21271 PF00696 Amino acid kinase family Y11_21271 PF01472 PUA domain Y11_21281 PF07417 Sigma factor-binding transcriptional regulator Crl Y11_21301 PF00156 Phosphoribosyl transferase domain Y11_21321 PF01546 Peptidase family M20/M25/M40 Y11_21321 PF07687 Peptidase dimerisation domain Y11_21331 PF00817 impB/mucB/samB family Y11_21331 PF11799 impB/mucB/samB family C-terminal domain Y11_21331 PF11798 IMS family HHH motif Y11_21351 PF00291 Pyridoxal-phosphate dependent enzyme Y11_21361 PF13309 HTH domain Y11_21361 PF08348 YheO-like PAS domain Y11_21371 PF07478 D-ala D-ala ligase C-terminus Y11_21371 PF01820 D-ala D-ala ligase N-terminus Y11_21381 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_21391 PF04400 (Na+)-NQR maturation NqrM Y11_21401 PF02424 ApbE family Y11_21411 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_21411 PF00970 Oxidoreductase FAD-binding domain Y11_21411 PF00175 Oxidoreductase NAD-binding domain Y11_21421 PF02508 Rnf-Nqr subunit, membrane protein Y11_21431 PF02508 Rnf-Nqr subunit, membrane protein Y11_21441 PF04205 FMN-binding domain Y11_21451 PF03116 NQR2, RnfD, RnfE family Y11_21461 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Y11_21461 PF11973 NQRA C-terminal domain Y11_21471 PF03734 L,D-transpeptidase catalytic domain Y11_21481 PF13230 Glutamine amidotransferases class-II Y11_21491 PF13580 SIS domain Y11_21501 PF09317 Domain of unknown function (DUF1974) Y11_21501 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Y11_21501 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_21511 PF18071 HMW1C N-terminal Y11_21511 PF18254 HMW1 domain 2 Y11_21531 PF05860 haemagglutination activity domain Y11_21541 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_21541 PF08479 POTRA domain, ShlB-type Y11_21561 PF01636 Phosphotransferase enzyme family Y11_21581 PF01008 Initiation factor 2 subunit family Y11_21591 PF03079 ARD/ARD' family Y11_21611 PF00596 Class II Aldolase and Adducin N-terminal domain Y11_21621 PF00155 Aminotransferase class I and II Y11_21631 PF00795 Carbon-nitrogen hydrolase Y11_21641 PF07687 Peptidase dimerisation domain Y11_21641 PF01546 Peptidase family M20/M25/M40 Y11_21651 PF00266 Aminotransferase class-V Y11_21661 PF00005 ABC transporter Y11_21671 PF00528 Binding-protein-dependent transport system inner membrane component Y11_21681 PF00528 Binding-protein-dependent transport system inner membrane component Y11_21691 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_21731 PF01425 Amidase Y11_21761 PF07690 Major Facilitator Superfamily Y11_21771 PF03591 AzlC protein Y11_21781 PF05437 Branched-chain amino acid transport protein (AzlD) Y11_21791 PF01047 MarR family Y11_21801 PF02321 Outer membrane efflux protein Y11_21811 PF00529 HlyD membrane-fusion protein of T1SS Y11_21811 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_21821 PF07690 Major Facilitator Superfamily Y11_21831 PF02371 Transposase IS116/IS110/IS902 family Y11_21831 PF01548 Transposase Y11_21841 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y11_21841 PF00588 SpoU rRNA Methylase family Y11_21851 PF00085 Thioredoxin Y11_21871 PF00583 Acetyltransferase (GNAT) family Y11_21871 PF13380 CoA binding domain Y11_21871 PF13607 Succinyl-CoA ligase like flavodoxin domain Y11_21881 PF13091 PLD-like domain Y11_21891 PF10043 Predicted periplasmic lipoprotein (DUF2279) Y11_21901 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y11_21911 PF13525 Outer membrane lipoprotein Y11_21921 PF00849 RNA pseudouridylate synthase Y11_21921 PF01479 S4 domain Y11_21941 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_21941 PF17871 AAA lid domain Y11_21941 PF07724 AAA domain (Cdc48 subfamily) Y11_21941 PF02861 Clp amino terminal domain, pathogenicity island component Y11_21941 PF00004 ATPase family associated with various cellular activities (AAA) Y11_21961 PF01548 Transposase Y11_21961 PF02371 Transposase IS116/IS110/IS902 family Y11_21971 PF01548 Transposase Y11_21971 PF02371 Transposase IS116/IS110/IS902 family Y11_21981 PF00800 Prephenate dehydratase Y11_21981 PF01817 Chorismate mutase type II Y11_21991 PF01817 Chorismate mutase type II Y11_21991 PF02153 Prephenate dehydrogenase Y11_22001 PF00793 DAHP synthetase I family Y11_22011 PF04397 LytTr DNA-binding domain Y11_22011 PF00072 Response regulator receiver domain Y11_22021 PF03605 Anaerobic c4-dicarboxylate membrane transporter Y11_22031 PF04338 Protein of unknown function, DUF481 Y11_22041 PF01245 Ribosomal protein L19 Y11_22051 PF01746 tRNA (Guanine-1)-methyltransferase Y11_22061 PF05239 PRC-barrel domain Y11_22061 PF01782 RimM N-terminal domain Y11_22071 PF00886 Ribosomal protein S16 Y11_22081 PF02881 SRP54-type protein, helical bundle domain Y11_22081 PF00448 SRP54-type protein, GTPase domain Y11_22081 PF02978 Signal peptide binding domain Y11_22091 PF01578 Cytochrome C assembly protein Y11_22101 PF00571 CBS domain Y11_22101 PF03471 Transporter associated domain Y11_22101 PF01595 Cyclin M transmembrane N-terminal domain Y11_22111 PF02664 S-Ribosylhomocysteinase (LuxS) Y11_22121 PF04262 Glutamate-cysteine ligase Y11_22131 PF09335 SNARE associated Golgi protein Y11_22141 PF13419 Haloacid dehalogenase-like hydrolase Y11_22151 PF02599 Global regulator protein family Y11_22161 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Y11_22161 PF01411 tRNA synthetases class II (A) Y11_22161 PF02272 DHHA1 domain Y11_22171 PF02631 RecX family Y11_22181 PF00154 recA bacterial DNA recombination protein Y11_22191 PF02464 Competence-damaged protein Y11_22201 PF07690 Major Facilitator Superfamily Y11_22231 PF02613 Nitrate reductase delta subunit Y11_22241 PF04976 DMSO reductase anchor subunit (DmsC) Y11_22251 PF13247 4Fe-4S dicluster domain Y11_22251 PF12800 4Fe-4S binding domain Y11_22261 PF01568 Molydopterin dinucleotide binding domain Y11_22261 PF00384 Molybdopterin oxidoreductase Y11_22261 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Y11_22271 PF05681 Fumarate hydratase (Fumerase) Y11_22271 PF05683 Fumarase C-terminus Y11_22281 PF13458 Periplasmic binding protein Y11_22291 PF02653 Branched-chain amino acid transport system / permease component Y11_22301 PF02653 Branched-chain amino acid transport system / permease component Y11_22301 PF11862 Domain of unknown function (DUF3382) Y11_22311 PF00005 ABC transporter Y11_22321 PF00005 ABC transporter Y11_22361 PF00795 Carbon-nitrogen hydrolase Y11_22371 PF04198 Putative sugar-binding domain Y11_22371 PF13936 Helix-turn-helix domain Y11_22381 PF03610 PTS system fructose IIA component Y11_22391 PF03830 PTS system sorbose subfamily IIB component Y11_22401 PF03609 PTS system sorbose-specific iic component Y11_22411 PF03613 PTS system mannose/fructose/sorbose family IID component Y11_22421 PF00107 Zinc-binding dehydrogenase Y11_22421 PF08240 Alcohol dehydrogenase GroES-like domain Y11_22431 PF01022 Bacterial regulatory protein, arsR family Y11_22441 PF03144 Elongation factor Tu domain 2 Y11_22441 PF03764 Elongation factor G, domain IV Y11_22441 PF14492 Elongation Factor G, domain II Y11_22441 PF00009 Elongation factor Tu GTP binding domain Y11_22441 PF00679 Elongation factor G C-terminus Y11_22471 PF00034 Cytochrome c Y11_22471 PF14376 Haem-binding domain Y11_22471 PF03150 Di-haem cytochrome c peroxidase Y11_22481 PF00155 Aminotransferase class I and II Y11_22491 PF02371 Transposase IS116/IS110/IS902 family Y11_22491 PF01548 Transposase Y11_22531 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_22531 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_22541 PF02321 Outer membrane efflux protein Y11_22551 PF12704 MacB-like periplasmic core domain Y11_22551 PF00005 ABC transporter Y11_22551 PF02687 FtsX-like permease family Y11_22561 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_22571 PF03412 Peptidase C39 family Y11_22571 PF00664 ABC transporter transmembrane region Y11_22571 PF00005 ABC transporter Y11_22611 PF00419 Fimbrial protein Y11_22621 PF00419 Fimbrial protein Y11_22641 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_22641 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_22651 PF13953 PapC C-terminal domain Y11_22651 PF00577 Outer membrane usher protein Y11_22651 PF13954 PapC N-terminal domain Y11_22671 PF00419 Fimbrial protein Y11_22691 PF00419 Fimbrial protein Y11_22731 PF01624 MutS domain I Y11_22731 PF05188 MutS domain II Y11_22731 PF05192 MutS domain III Y11_22731 PF00488 MutS domain V Y11_22731 PF05190 MutS family domain IV Y11_22741 PF00140 Sigma-70 factor, region 1.2 Y11_22741 PF04539 Sigma-70 region 3 Y11_22741 PF04545 Sigma-70, region 4 Y11_22741 PF04542 Sigma-70 region 2 Y11_22751 PF01476 LysM domain Y11_22751 PF01551 Peptidase family M23 Y11_22771 PF01975 Survival protein SurE Y11_22781 PF01142 tRNA pseudouridine synthase D (TruD) Y11_22791 PF02542 YgbB family Y11_22801 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Y11_22811 PF04977 Septum formation initiator Y11_22821 PF12084 Protein of unknown function (DUF3561) Y11_22841 PF00009 Elongation factor Tu GTP binding domain Y11_22851 PF01507 Phosphoadenosine phosphosulfate reductase family Y11_22861 PF14824 Sirohaem biosynthesis protein central Y11_22861 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_22861 PF10414 Sirohaem synthase dimerisation region Y11_22871 PF04389 Peptidase family M28 Y11_22901 PF01507 Phosphoadenosine phosphosulfate reductase family Y11_22911 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y11_22911 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y11_22921 PF00175 Oxidoreductase NAD-binding domain Y11_22921 PF00667 FAD binding domain Y11_22921 PF00258 Flavodoxin Y11_22931 PF01242 6-pyruvoyl tetrahydropterin synthase Y11_22971 PF04055 Radical SAM superfamily Y11_22981 PF00080 Copper/zinc superoxide dismutase (SODC) Y11_23031 PF01842 ACT domain Y11_23031 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_23031 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_23041 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Y11_23051 PF03466 LysR substrate binding domain Y11_23051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_23061 PF04402 Protein of unknown function (DUF541) Y11_23071 PF01810 LysE type translocator Y11_23091 PF02371 Transposase IS116/IS110/IS902 family Y11_23091 PF01548 Transposase Y11_23111 PF05552 Conserved TM helix Y11_23111 PF00924 Mechanosensitive ion channel Y11_23121 PF09013 YopH, N-terminal Y11_23121 PF00102 Protein-tyrosine phosphatase Y11_23131 PF01116 Fructose-bisphosphate aldolase class-II Y11_23141 PF00162 Phosphoglycerate kinase Y11_23151 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_23151 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Y11_23161 PF02779 Transketolase, pyrimidine binding domain Y11_23161 PF02780 Transketolase, C-terminal domain Y11_23161 PF00456 Transketolase, thiamine diphosphate binding domain Y11_23171 PF01435 Peptidase family M48 Y11_23181 PF00355 Rieske [2Fe-2S] domain Y11_23201 PF17944 Arginine decarboxylase C-terminal helical extension Y11_23201 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y11_23201 PF17810 Arginine decarboxylase helical bundle domain Y11_23221 PF00438 S-adenosylmethionine synthetase, N-terminal domain Y11_23221 PF02773 S-adenosylmethionine synthetase, C-terminal domain Y11_23221 PF02772 S-adenosylmethionine synthetase, central domain Y11_23241 PF04143 Sulphur transport Y11_23261 PF17283 SprT-like zinc ribbon domain Y11_23261 PF10263 SprT-like family Y11_23271 PF04231 Endonuclease I Y11_23281 PF04452 RNA methyltransferase Y11_23291 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Y11_23291 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Y11_23301 PF02622 Uncharacterized ACR, COG1678 Y11_23311 PF03652 Holliday junction resolvase Y11_23321 PF00795 Carbon-nitrogen hydrolase Y11_23331 PF04371 Porphyromonas-type peptidyl-arginine deiminase Y11_23341 PF00437 Type II/IV secretion system protein Y11_23351 PF01168 Alanine racemase, N-terminal domain Y11_23361 PF03807 NADP oxidoreductase coenzyme F420-dependent Y11_23361 PF14748 Pyrroline-5-carboxylate reductase dimerisation Y11_23371 PF02325 YGGT family Y11_23381 PF02594 Uncharacterised ACR, YggU family COG1872 Y11_23391 PF01725 Ham1 family Y11_23401 PF04055 Radical SAM superfamily Y11_23401 PF06969 HemN C-terminal domain Y11_23411 PF11101 Protein of unknown function (DUF2884) Y11_23421 PF04960 Glutaminase Y11_23431 PF04320 Protein with unknown function (DUF469) Y11_23441 PF02390 Putative methyltransferase Y11_23451 PF10576 Iron-sulfur binding domain of endonuclease III Y11_23451 PF00730 HhH-GPD superfamily base excision DNA repair protein Y11_23451 PF00633 Helix-hairpin-helix motif Y11_23451 PF14815 NUDIX domain Y11_23461 PF04362 Bacterial Fe(2+) trafficking Y11_23471 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Y11_23471 PF01464 Transglycosylase SLT domain Y11_23491 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_23491 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_23491 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_23521 PF00589 Phage integrase family Y11_23551 PF03811 InsA N-terminal domain Y11_23551 PF12759 InsA C-terminal domain Y11_23561 PF03400 IS1 transposase Y11_23601 PF13520 Amino acid permease Y11_23611 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_23611 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_23611 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_23631 PF04632 Fusaric acid resistance protein family Y11_23641 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_23641 PF00529 HlyD membrane-fusion protein of T1SS Y11_23681 PF00557 Metallopeptidase family M24 Y11_23691 PF00005 ABC transporter Y11_23701 PF01032 FecCD transport family Y11_23721 PF01032 FecCD transport family Y11_23731 PF01497 Periplasmic binding protein Y11_23761 PF00892 EamA-like transporter family Y11_23771 PF00155 Aminotransferase class I and II Y11_23771 PF00392 Bacterial regulatory proteins, gntR family Y11_23801 PF07690 Major Facilitator Superfamily Y11_23801 PF00083 Sugar (and other) transporter Y11_23811 PF00356 Bacterial regulatory proteins, lacI family Y11_23821 PF01156 Inosine-uridine preferring nucleoside hydrolase Y11_23831 PF02690 Na+/Pi-cotransporter Y11_23861 PF08946 Osmosensory transporter coiled coil Y11_23861 PF00083 Sugar (and other) transporter Y11_23871 PF00873 AcrB/AcrD/AcrF family Y11_23881 PF00873 AcrB/AcrD/AcrF family Y11_23891 PF13533 Biotin-lipoyl like Y11_23901 PF08447 PAS fold Y11_23901 PF08448 PAS fold Y11_23901 PF00990 Diguanylate cyclase, GGDEF domain Y11_23901 PF00563 EAL domain Y11_23921 PF02110 Hydroxyethylthiazole kinase family Y11_23931 PF13784 Fic/DOC family N-terminal Y11_23931 PF02661 Fic/DOC family Y11_23941 PF07503 HypF finger Y11_23941 PF00708 Acylphosphatase Y11_23941 PF17788 HypF Kae1-like domain Y11_23941 PF01300 Telomere recombination Y11_23951 PF02769 AIR synthase related protein, C-terminal domain Y11_23951 PF00586 AIR synthase related protein, N-terminal domain Y11_23961 PF01924 Hydrogenase formation hypA family Y11_23971 PF01455 HupF/HypC family Y11_23981 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_23991 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Y11_24001 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE Y11_24011 PF01750 Hydrogenase maturation protease Y11_24021 PF00374 Nickel-dependent hydrogenase Y11_24031 PF03916 Polysulphide reductase, NrfD Y11_24041 PF13247 4Fe-4S dicluster domain Y11_24051 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Y11_24051 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Y11_24061 PF05433 Glycine zipper 2TM domain Y11_24071 PF13677 Membrane MotB of proton-channel complex MotA/MotB Y11_24071 PF00691 OmpA family Y11_24081 PF01618 MotA/TolQ/ExbB proton channel family Y11_24091 PF04542 Sigma-70 region 2 Y11_24091 PF04545 Sigma-70, region 4 Y11_24131 PF02561 Flagellar protein FliS Y11_24141 PF07195 Flagellar hook-associated protein 2 C-terminus Y11_24141 PF07196 Flagellin hook IN motif Y11_24141 PF02465 Flagellar hook-associated protein 2 N-terminus Y11_24161 PF00669 Bacterial flagellin N-terminal helical region Y11_24161 PF00700 Bacterial flagellin C-terminal helical region Y11_24191 PF00486 Transcriptional regulatory protein, C terminal Y11_24191 PF18500 CadC C-terminal domain 1 Y11_24261 PF02119 Flagellar P-ring protein Y11_24271 PF02119 Flagellar P-ring protein Y11_24281 PF02107 Flagellar L-ring protein Y11_24291 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_24291 PF00460 Flagella basal body rod protein Y11_24301 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_24301 PF00460 Flagella basal body rod protein Y11_24311 PF00460 Flagella basal body rod protein Y11_24311 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_24311 PF07559 Flagellar basal body protein FlaE Y11_24321 PF03963 Flagellar hook capping protein - N-terminal region Y11_24321 PF13860 FlgD Ig-like domain Y11_24321 PF13861 FlgD Tudor-like domain Y11_24331 PF00460 Flagella basal body rod protein Y11_24331 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Y11_24341 PF00460 Flagella basal body rod protein Y11_24381 PF02371 Transposase IS116/IS110/IS902 family Y11_24381 PF01548 Transposase Y11_24401 PF00665 Integrase core domain Y11_24401 PF13276 HTH-like domain Y11_24401 PF13333 Integrase core domain Y11_24421 PF12704 MacB-like periplasmic core domain Y11_24421 PF02687 FtsX-like permease family Y11_24421 PF00005 ABC transporter Y11_24481 PF12833 Helix-turn-helix domain Y11_24521 PF02586 SOS response associated peptidase (SRAP) Y11_24541 PF00873 AcrB/AcrD/AcrF family Y11_24551 PF13532 2OG-Fe(II) oxygenase superfamily Y11_24601 PF04972 BON domain Y11_24601 PF00263 Bacterial type II and III secretion system protein Y11_24601 PF13629 Pilus formation protein N terminal region Y11_24641 PF00437 Type II/IV secretion system protein Y11_24711 PF02472 Biopolymer transport protein ExbD/TolR Y11_24721 PF01618 MotA/TolQ/ExbB proton channel family Y11_24731 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_24741 PF09335 SNARE associated Golgi protein Y11_24751 PF12833 Helix-turn-helix domain Y11_24751 PF06719 AraC-type transcriptional regulator N-terminus Y11_24761 PF00465 Iron-containing alcohol dehydrogenase Y11_24771 PF00248 Aldo/keto reductase family Y11_24781 PF04055 Radical SAM superfamily Y11_24781 PF11842 Domain of unknown function (DUF3362) Y11_24781 PF08497 Radical SAM N-terminal Y11_24791 PF07731 Multicopper oxidase Y11_24791 PF07732 Multicopper oxidase Y11_24801 PF01553 Acyltransferase Y11_24811 PF03989 DNA gyrase C-terminal domain, beta-propeller Y11_24811 PF00521 DNA gyrase/topoisomerase IV, subunit A Y11_24821 PF02525 Flavodoxin-like fold Y11_24831 PF03992 Antibiotic biosynthesis monooxygenase Y11_24841 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_24841 PF03466 LysR substrate binding domain Y11_24851 PF01751 Toprim domain Y11_24851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_24851 PF00986 DNA gyrase B subunit, carboxyl terminus Y11_24851 PF00204 DNA gyrase B Y11_24861 PF05728 Uncharacterised protein family (UPF0227) Y11_24871 PF00149 Calcineurin-like phosphoesterase Y11_24881 PF06853 Protein of unknown function (DUF1249) Y11_24891 PF00293 NUDIX domain Y11_24901 PF02321 Outer membrane efflux protein Y11_24921 PF06693 Protein of unknown function (DUF1190) Y11_24931 PF03738 Glutathionylspermidine synthase preATP-grasp Y11_24941 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Y11_24951 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Y11_24961 PF04380 Membrane fusogenic activity Y11_24971 PF13520 Amino acid permease Y11_24981 PF01467 Cytidylyltransferase-like Y11_24981 PF00294 pfkB family carbohydrate kinase Y11_24991 PF03710 Glutamate-ammonia ligase adenylyltransferase Y11_24991 PF08335 GlnD PII-uridylyltransferase Y11_25001 PF01928 CYTH domain Y11_25011 PF08239 Bacterial SH3 domain Y11_25021 PF01743 Poly A polymerase head domain Y11_25021 PF01966 HD domain Y11_25021 PF12627 Probable RNA and SrmB- binding site of polymerase A Y11_25031 PF02673 Bacitracin resistance protein BacA Y11_25041 PF02152 Dihydroneopterin aldolase Y11_25051 PF02660 Glycerol-3-phosphate acyltransferase Y11_25061 PF00814 Glycoprotease family Y11_25071 PF01165 Ribosomal protein S21 Y11_25091 PF08275 DNA primase catalytic core, N-terminal domain Y11_25091 PF10410 DnaB-helicase binding domain of primase Y11_25091 PF08278 DNA primase DnaG DnaB-binding Y11_25091 PF01807 CHC2 zinc finger Y11_25101 PF04545 Sigma-70, region 4 Y11_25101 PF04542 Sigma-70 region 2 Y11_25101 PF03979 Sigma-70 factor, region 1.1 Y11_25101 PF00140 Sigma-70 factor, region 1.2 Y11_25101 PF04539 Sigma-70 region 3 Y11_25101 PF04546 Sigma-70, non-essential region Y11_25471 PF05840 Bacteriophage replication gene A protein (GPA) Y11_25521 PF06892 Phage regulatory protein CII (CP76) Y11_25551 PF00589 Phage integrase family Y11_25551 PF02899 Phage integrase, N-terminal SAM-like domain Y11_25561 PF07075 Protein of unknown function (DUF1343) Y11_25581 PF01915 Glycosyl hydrolase family 3 C-terminal domain Y11_25581 PF00933 Glycosyl hydrolase family 3 N terminal domain Y11_25601 PF01418 Helix-turn-helix domain, rpiR family Y11_25601 PF01380 SIS domain Y11_25611 PF13580 SIS domain Y11_25621 PF00367 phosphotransferase system, EIIB Y11_25621 PF02378 Phosphotransferase system, EIIC Y11_25631 PF04960 Glutaminase Y11_25641 PF13520 Amino acid permease Y11_25651 PF00282 Pyridoxal-dependent decarboxylase conserved domain Y11_25661 PF00282 Pyridoxal-dependent decarboxylase conserved domain Y11_25681 PF03729 Short repeat of unknown function (DUF308) Y11_25691 PF00892 EamA-like transporter family Y11_25701 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Y11_25701 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_25721 PF01548 Transposase Y11_25721 PF02371 Transposase IS116/IS110/IS902 family Y11_25731 PF05175 Methyltransferase small domain Y11_25741 PF03797 Autotransporter beta-domain Y11_25771 PF01863 Protein of unknown function DUF45 Y11_25781 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_25791 PF03741 Integral membrane protein TerC family Y11_25801 PF00375 Sodium:dicarboxylate symporter family Y11_25811 PF10688 Bacterial inner membrane protein Y11_25821 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Y11_25821 PF08666 SAF domain Y11_25831 PF01232 Mannitol dehydrogenase Rossmann domain Y11_25831 PF08125 Mannitol dehydrogenase C-terminal domain Y11_25841 PF02614 Glucuronate isomerase Y11_25861 PF07690 Major Facilitator Superfamily Y11_25871 PF00392 Bacterial regulatory proteins, gntR family Y11_25871 PF07729 FCD domain Y11_25891 PF09335 SNARE associated Golgi protein Y11_25901 PF13721 SecD export protein N-terminal TM region Y11_25921 PF05957 Bacterial protein of unknown function (DUF883) Y11_25931 PF07332 Putative Actinobacterial Holin-X, holin superfamily III Y11_25941 PF13997 YqjK-like protein Y11_25951 PF07681 DoxX Y11_25971 PF13409 Glutathione S-transferase, N-terminal domain Y11_25981 PF03466 LysR substrate binding domain Y11_25981 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_25991 PF17954 Quercetinase C-terminal cupin domain Y11_25991 PF02678 Pirin Y11_26001 PF08240 Alcohol dehydrogenase GroES-like domain Y11_26001 PF00107 Zinc-binding dehydrogenase Y11_26011 PF08240 Alcohol dehydrogenase GroES-like domain Y11_26011 PF00107 Zinc-binding dehydrogenase Y11_26021 PF00107 Zinc-binding dehydrogenase Y11_26021 PF08240 Alcohol dehydrogenase GroES-like domain Y11_26031 PF00248 Aldo/keto reductase family Y11_26041 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_26041 PF03466 LysR substrate binding domain Y11_26061 PF13954 PapC N-terminal domain Y11_26061 PF13953 PapC C-terminal domain Y11_26061 PF00577 Outer membrane usher protein Y11_26071 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_26071 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_26101 PF00145 C-5 cytosine-specific DNA methylase Y11_26111 PF01695 IstB-like ATP binding protein Y11_26121 PF00665 Integrase core domain Y11_26151 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_26161 PF04348 LppC putative lipoprotein Y11_26171 PF02021 Uncharacterised protein family UPF0102 Y11_26181 PF13580 SIS domain Y11_26191 PF04972 BON domain Y11_26201 PF01548 Transposase Y11_26201 PF02371 Transposase IS116/IS110/IS902 family Y11_26211 PF00912 Transglycosylase Y11_26231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_26231 PF00512 His Kinase A (phospho-acceptor) domain Y11_26231 PF18415 Histidine kinase receptor ArcB trans-membrane domain Y11_26231 PF00072 Response regulator receiver domain Y11_26231 PF01627 Hpt domain Y11_26231 PF00989 PAS fold Y11_26241 PF04055 Radical SAM superfamily Y11_26241 PF16199 Radical_SAM C-terminal domain Y11_26251 PF04898 Glutamate synthase central domain Y11_26251 PF01645 Conserved region in glutamate synthase Y11_26251 PF00310 Glutamine amidotransferases class-II Y11_26251 PF01493 GXGXG motif Y11_26261 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Y11_26261 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_26281 PF04386 Stringent starvation protein B Y11_26291 PF00043 Glutathione S-transferase, C-terminal domain Y11_26291 PF02798 Glutathione S-transferase, N-terminal domain Y11_26311 PF00380 Ribosomal protein S9/S16 Y11_26321 PF00572 Ribosomal protein L13 Y11_26331 PF03969 AFG1-like ATPase Y11_26341 PF06295 Protein of unknown function (DUF1043) Y11_26351 PF13180 PDZ domain Y11_26351 PF00595 PDZ domain Y11_26361 PF13180 PDZ domain Y11_26371 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Y11_26381 PF01722 BolA-like protein Y11_26391 PF13466 STAS domain Y11_26401 PF05494 MlaC protein Y11_26411 PF02470 MlaD protein Y11_26421 PF02405 Permease MlaE Y11_26431 PF00005 ABC transporter Y11_26441 PF01699 Sodium/calcium exchanger protein Y11_26451 PF01380 SIS domain Y11_26451 PF00571 CBS domain Y11_26471 PF06835 Lipopolysaccharide-assembly, LptC-related Y11_26481 PF03968 OstA-like protein Y11_26491 PF00005 ABC transporter Y11_26491 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y11_26501 PF04963 Sigma-54 factor, core binding domain Y11_26501 PF04552 Sigma-54, DNA binding domain Y11_26501 PF00309 Sigma-54 factor, Activator interacting domain (AID) Y11_26511 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Y11_26521 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_26531 PF03668 P-loop ATPase protein family Y11_26541 PF00381 PTS HPr component phosphorylation site Y11_26561 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y11_26561 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y11_26571 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Y11_26571 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Y11_26581 PF01042 Endoribonuclease L-PSP Y11_26601 PF14403 Circularly permuted ATP-grasp type 2 Y11_26611 PF04168 A predicted alpha-helical domain with a conserved ER motif. Y11_26611 PF14403 Circularly permuted ATP-grasp type 2 Y11_26641 PF11941 Domain of unknown function (DUF3459) Y11_26641 PF00128 Alpha amylase, catalytic domain Y11_26651 PF00367 phosphotransferase system, EIIB Y11_26651 PF02378 Phosphotransferase system, EIIC Y11_26661 PF00356 Bacterial regulatory proteins, lacI family Y11_26671 PF00689 Cation transporting ATPase, C-terminus Y11_26671 PF00690 Cation transporter/ATPase, N-terminus Y11_26691 PF01381 Helix-turn-helix Y11_26701 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_26701 PF00874 PRD domain Y11_26701 PF05043 Mga helix-turn-helix domain Y11_26701 PF08279 HTH domain Y11_26711 PF10282 Lactonase, 7-bladed beta-propeller Y11_26721 PF07071 KDGP aldolase Y11_26731 PF07071 KDGP aldolase Y11_26741 PF03841 L-seryl-tRNA selenium transferase Y11_26751 PF01979 Amidohydrolase family Y11_26821 PF14760 Rnk N-terminus Y11_26821 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_26831 PF07361 Cytochrome b562 Y11_26841 PF01548 Transposase Y11_26841 PF02371 Transposase IS116/IS110/IS902 family Y11_26851 PF01523 Putative modulator of DNA gyrase Y11_26861 PF04751 Protein of unknown function (DUF615) Y11_26871 PF01337 Barstar (barnase inhibitor) Y11_26891 PF00171 Aldehyde dehydrogenase family Y11_26901 PF04632 Fusaric acid resistance protein family Y11_26911 PF13533 Biotin-lipoyl like Y11_26921 PF07869 Protein of unknown function (DUF1656) Y11_26931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_26931 PF03466 LysR substrate binding domain Y11_26971 PF18413 Neuraminidase-like domain Y11_26971 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain Y11_26981 PF03534 Salmonella virulence plasmid 65kDa B protein Y11_26981 PF12255 Insecticide toxin TcdB middle/C-terminal region Y11_26981 PF12256 Insecticide toxin TcdB middle/N-terminal region Y11_26991 PF12255 Insecticide toxin TcdB middle/C-terminal region Y11_26991 PF03534 Salmonella virulence plasmid 65kDa B protein Y11_26991 PF12256 Insecticide toxin TcdB middle/N-terminal region Y11_27041 PF14431 YwqJ-like deaminase Y11_27041 PF18807 Tripartite Tc toxins repeat Y11_27071 PF01523 Putative modulator of DNA gyrase Y11_27081 PF00795 Carbon-nitrogen hydrolase Y11_27091 PF13502 AsmA-like C-terminal region Y11_27091 PF13116 Protein of unknown function Y11_27101 PF00575 S1 RNA binding domain Y11_27101 PF10150 Ribonuclease E/G family Y11_27111 PF02545 Maf-like protein Y11_27121 PF04093 rod shape-determining protein MreD Y11_27131 PF04085 rod shape-determining protein MreC Y11_27151 PF00563 EAL domain Y11_27151 PF17157 Gammaproteobacterial periplasmic sensor domain Y11_27151 PF00990 Diguanylate cyclase, GGDEF domain Y11_27161 PF08240 Alcohol dehydrogenase GroES-like domain Y11_27161 PF00107 Zinc-binding dehydrogenase Y11_27171 PF00174 Oxidoreductase molybdopterin binding domain Y11_27181 PF01794 Ferric reductase like transmembrane component Y11_27191 PF01220 Dehydroquinase class II Y11_27201 PF00364 Biotin-requiring enzyme Y11_27211 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y11_27211 PF00289 Biotin carboxylase, N-terminal domain Y11_27211 PF02785 Biotin carboxylase C-terminal domain Y11_27221 PF06196 Protein of unknown function (DUF997) Y11_27231 PF00474 Sodium:solute symporter family Y11_27251 PF01207 Dihydrouridine synthase (Dus) Y11_27261 PF02954 Bacterial regulatory protein, Fis family Y11_27271 PF00072 Response regulator receiver domain Y11_27271 PF00990 Diguanylate cyclase, GGDEF domain Y11_27281 PF05433 Glycine zipper 2TM domain Y11_27291 PF00313 'Cold-shock' DNA-binding domain Y11_27301 PF00313 'Cold-shock' DNA-binding domain Y11_27331 PF00939 Sodium:sulfate symporter transmembrane region Y11_27341 PF03279 Bacterial lipid A biosynthesis acyltransferase Y11_27351 PF02371 Transposase IS116/IS110/IS902 family Y11_27351 PF01548 Transposase Y11_27371 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_27381 PF00528 Binding-protein-dependent transport system inner membrane component Y11_27391 PF00528 Binding-protein-dependent transport system inner membrane component Y11_27401 PF00005 ABC transporter Y11_27421 PF03788 LrgA family Y11_27431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_27431 PF03466 LysR substrate binding domain Y11_27441 PF00999 Sodium/hydrogen exchanger family Y11_27451 PF00860 Permease family Y11_27481 PF07804 HipA-like C-terminal domain Y11_27481 PF13657 HipA N-terminal domain Y11_27491 PF00436 Single-strand binding protein family Y11_27501 PF00005 ABC transporter Y11_27501 PF17755 UvrA DNA-binding domain Y11_27501 PF17760 UvrA interaction domain Y11_27511 PF04237 YjbR Y11_27521 PF00155 Aminotransferase class I and II Y11_27531 PF00842 Alanine racemase, C-terminal domain Y11_27531 PF01168 Alanine racemase, N-terminal domain Y11_27541 PF00772 DnaB-like helicase N terminal domain Y11_27541 PF03796 DnaB-like helicase C terminal domain Y11_27551 PF00107 Zinc-binding dehydrogenase Y11_27551 PF08240 Alcohol dehydrogenase GroES-like domain Y11_27571 PF09583 Phage shock protein G (Phageshock_PspG) Y11_27581 PF01207 Dihydrouridine synthase (Dus) Y11_27591 PF01757 Acyltransferase family Y11_27601 PF01475 Ferric uptake regulator family Y11_27621 PF05532 CsbD-like Y11_27631 PF01726 LexA DNA binding domain Y11_27631 PF00717 Peptidase S24-like Y11_27641 PF01219 Prokaryotic diacylglycerol kinase Y11_27651 PF01553 Acyltransferase Y11_27661 PF01040 UbiA prenyltransferase family Y11_27671 PF04345 Chorismate lyase Y11_27691 PF07148 Maltose operon periplasmic protein precursor (MalM) Y11_27701 PF02264 LamB porin Y11_27711 PF00005 ABC transporter Y11_27711 PF17912 MalK OB fold domain Y11_27721 PF01547 Bacterial extracellular solute-binding protein Y11_27731 PF00528 Binding-protein-dependent transport system inner membrane component Y11_27731 PF14785 Maltose transport system permease protein MalF P2 domain Y11_27741 PF00528 Binding-protein-dependent transport system inner membrane component Y11_27751 PF06146 Phosphate-starvation-inducible E Y11_27761 PF00342 Phosphoglucose isomerase Y11_27771 PF01842 ACT domain Y11_27771 PF00696 Amino acid kinase family Y11_27781 PF01758 Sodium Bile acid symporter family Y11_27791 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_27791 PF08479 POTRA domain, ShlB-type Y11_27791 PF17287 POTRA domain Y11_27801 PF13332 Hemagglutinin repeat Y11_27801 PF05860 haemagglutination activity domain Y11_27811 PF00809 Pterin binding enzyme Y11_27811 PF02310 B12 binding domain Y11_27811 PF02965 Vitamin B12 dependent methionine synthase, activation domain Y11_27811 PF02574 Homocysteine S-methyltransferase Y11_27811 PF02607 B12 binding domain Y11_27821 PF09339 IclR helix-turn-helix domain Y11_27821 PF01614 Bacterial transcriptional regulator Y11_27831 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Y11_27841 PF00463 Isocitrate lyase family Y11_27851 PF01274 Malate synthase Y11_27861 PF04204 Homoserine O-succinyltransferase Y11_27871 PF01548 Transposase Y11_27871 PF02371 Transposase IS116/IS110/IS902 family Y11_27891 PF01177 Asp/Glu/Hydantoin racemase Y11_27901 PF07715 TonB-dependent Receptor Plug Domain Y11_27901 PF00593 TonB dependent receptor Y11_27911 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_27921 PF07226 Protein of unknown function (DUF1422) Y11_27931 PF00440 Bacterial regulatory proteins, tetR family Y11_27941 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_27941 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_27951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_27951 PF03466 LysR substrate binding domain Y11_27961 PF00462 Glutaredoxin Y11_27961 PF08534 Redoxin Y11_27971 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_27971 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_27991 PF00529 HlyD membrane-fusion protein of T1SS Y11_28001 PF00005 ABC transporter Y11_28001 PF00664 ABC transporter transmembrane region Y11_28051 PF07715 TonB-dependent Receptor Plug Domain Y11_28051 PF00593 TonB dependent receptor Y11_28061 PF14698 Argininosuccinate lyase C-terminal Y11_28061 PF00206 Lyase Y11_28081 PF00696 Amino acid kinase family Y11_28091 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_28091 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_28101 PF07687 Peptidase dimerisation domain Y11_28101 PF01546 Peptidase family M20/M25/M40 Y11_28121 PF00311 Phosphoenolpyruvate carboxylase Y11_28131 PF02219 Methylenetetrahydrofolate reductase Y11_28141 PF00696 Amino acid kinase family Y11_28141 PF03447 Homoserine dehydrogenase, NAD binding domain Y11_28141 PF00742 Homoserine dehydrogenase Y11_28151 PF01053 Cys/Met metabolism PLP-dependent enzyme Y11_28161 PF01340 Met Apo-repressor, MetJ Y11_28171 PF01197 Ribosomal protein L31 Y11_28181 PF18074 Primosomal protein N C-terminal domain Y11_28181 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Y11_28181 PF00271 Helicase conserved C-terminal domain Y11_28181 PF17764 3′ DNA-binding domain (3′BD) Y11_28181 PF00270 DEAD/DEAH box helicase Y11_28191 PF00356 Bacterial regulatory proteins, lacI family Y11_28201 PF05036 Sporulation related domain Y11_28211 PF00227 Proteasome subunit Y11_28221 PF07724 AAA domain (Cdc48 subfamily) Y11_28221 PF00004 ATPase family associated with various cellular activities (AAA) Y11_28221 PF10431 C-terminal, D2-small domain, of ClpB protein Y11_28231 PF01040 UbiA prenyltransferase family Y11_28241 PF03737 Aldolase/RraA Y11_28251 PF06005 Cell division protein ZapB Y11_28261 PF00230 Major intrinsic protein Y11_28271 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_28271 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_28281 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Y11_28291 PF01548 Transposase Y11_28291 PF02371 Transposase IS116/IS110/IS902 family Y11_28301 PF07690 Major Facilitator Superfamily Y11_28331 PF00970 Oxidoreductase FAD-binding domain Y11_28331 PF00175 Oxidoreductase NAD-binding domain Y11_28341 PF05656 Protein of unknown function (DUF805) Y11_28351 PF07305 Protein of unknown function (DUF1454) Y11_28361 PF00121 Triosephosphate isomerase Y11_28391 PF00365 Phosphofructokinase Y11_28401 PF01545 Cation efflux family Y11_28401 PF16916 Dimerisation domain of Zinc Transporter Y11_28571 PF00665 Integrase core domain Y11_28581 PF00665 Integrase core domain Y11_28591 PF01695 IstB-like ATP binding protein Y11_28651 PF07517 SecA DEAD-like domain Y11_28651 PF02810 SEC-C motif Y11_28651 PF00271 Helicase conserved C-terminal domain Y11_28651 PF01043 SecA preprotein cross-linking domain Y11_28651 PF07516 SecA Wing and Scaffold domain Y11_28661 PF05840 Bacteriophage replication gene A protein (GPA) Y11_28701 PF00589 Phage integrase family Y11_28701 PF02899 Phage integrase, N-terminal SAM-like domain Y11_28711 PF07813 LTXXQ motif family protein Y11_28721 PF00486 Transcriptional regulatory protein, C terminal Y11_28721 PF00072 Response regulator receiver domain Y11_28731 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_28731 PF00512 His Kinase A (phospho-acceptor) domain Y11_28731 PF16527 Two-component sensor protein CpxA, periplasmic domain Y11_28731 PF00672 HAMP domain Y11_28741 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Y11_28741 PF12833 Helix-turn-helix domain Y11_28741 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Y11_28741 PF02805 Metal binding domain of Ada Y11_28751 PF00588 SpoU rRNA Methylase family Y11_28761 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_28761 PF06426 Serine acetyltransferase, N-terminal Y11_28771 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Y11_28771 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Y11_28781 PF02556 Preprotein translocase subunit SecB Y11_28791 PF00462 Glutaredoxin Y11_28801 PF00581 Rhodanese-like domain Y11_28811 PF01676 Metalloenzyme superfamily Y11_28811 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Y11_28821 PF01551 Peptidase family M23 Y11_28831 PF04748 Divergent polysaccharide deacetylase Y11_28871 PF00107 Zinc-binding dehydrogenase Y11_28871 PF08240 Alcohol dehydrogenase GroES-like domain Y11_28881 PF00155 Aminotransferase class I and II Y11_28891 PF01370 NAD dependent epimerase/dehydratase family Y11_28901 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_28911 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_28921 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Y11_28931 PF00535 Glycosyl transferase family 2 Y11_28941 PF01467 Cytidylyltransferase-like Y11_28951 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Y11_28951 PF06827 Zinc finger found in FPG and IleRS Y11_28951 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Y11_28961 PF00471 Ribosomal protein L33 Y11_28971 PF00830 Ribosomal L28 family Y11_28981 PF04002 RadC-like JAB domain Y11_28991 PF02441 Flavoprotein Y11_28991 PF04127 DNA / pantothenate metabolism flavoprotein Y11_29001 PF00692 dUTPase Y11_29011 PF00440 Bacterial regulatory proteins, tetR family Y11_29051 PF00156 Phosphoribosyl transferase domain Y11_29061 PF01138 3' exoribonuclease family, domain 1 Y11_29061 PF03725 3' exoribonuclease family, domain 2 Y11_29071 PF08340 Domain of unknown function (DUF1732) Y11_29071 PF03755 YicC-like family, N-terminal region Y11_29091 PF13426 PAS domain Y11_29091 PF00990 Diguanylate cyclase, GGDEF domain Y11_29091 PF00563 EAL domain Y11_29101 PF00378 Enoyl-CoA hydratase/isomerase Y11_29111 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_29111 PF07670 Nucleoside recognition Y11_29111 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_29131 PF03458 UPF0126 domain Y11_29141 PF01653 NAD-dependent DNA ligase adenylation domain Y11_29141 PF03120 NAD-dependent DNA ligase OB-fold domain Y11_29151 PF00625 Guanylate kinase Y11_29161 PF01192 RNA polymerase Rpb6 Y11_29171 PF13291 ACT domain Y11_29171 PF04607 Region found in RelA / SpoT proteins Y11_29171 PF02824 TGS domain Y11_29181 PF12105 SpoU, rRNA methylase, C-terminal Y11_29181 PF00588 SpoU rRNA Methylase family Y11_29191 PF00270 DEAD/DEAH box helicase Y11_29191 PF00271 Helicase conserved C-terminal domain Y11_29191 PF17191 RecG wedge domain Y11_29211 PF02371 Transposase IS116/IS110/IS902 family Y11_29211 PF01548 Transposase Y11_29221 PF03616 Sodium/glutamate symporter Y11_29231 PF00860 Permease family Y11_29241 PF05170 AsmA family Y11_29281 PF13693 Winged helix-turn-helix DNA-binding Y11_29291 PF09500 Putative thioesterase (yiiD_Cterm) Y11_29291 PF00583 Acetyltransferase (GNAT) family Y11_29301 PF02580 D-Tyr-tRNA(Tyr) deacylase Y11_29311 PF03631 Virulence factor BrkB Y11_29321 PF13419 Haloacid dehalogenase-like hydrolase Y11_29341 PF00120 Glutamine synthetase, catalytic domain Y11_29341 PF03951 Glutamine synthetase, beta-Grasp domain Y11_29361 PF00989 PAS fold Y11_29361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_29361 PF00512 His Kinase A (phospho-acceptor) domain Y11_29371 PF02954 Bacterial regulatory protein, Fis family Y11_29371 PF00072 Response regulator receiver domain Y11_29371 PF00158 Sigma-54 interaction domain Y11_29381 PF06969 HemN C-terminal domain Y11_29381 PF04055 Radical SAM superfamily Y11_29391 PF04220 Der GTPase activator (YihI) Y11_29401 PF01926 50S ribosome-binding GTPase Y11_29411 PF01367 5'-3' exonuclease, C-terminal SAM fold Y11_29411 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y11_29411 PF00476 DNA polymerase family A Y11_29411 PF01612 3'-5' exonuclease Y11_29421 PF01323 DSBA-like thioredoxin domain Y11_29431 PF01636 Phosphotransferase enzyme family Y11_29441 PF06288 Protein of unknown function (DUF1040) Y11_29451 PF12804 MobA-like NTP transferase domain Y11_29461 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Y11_29471 PF13276 HTH-like domain Y11_29471 PF00665 Integrase core domain Y11_29471 PF13333 Integrase core domain Y11_29491 PF07729 FCD domain Y11_29491 PF00392 Bacterial regulatory proteins, gntR family Y11_29511 PF07690 Major Facilitator Superfamily Y11_29521 PF00356 Bacterial regulatory proteins, lacI family Y11_29531 PF00294 pfkB family carbohydrate kinase Y11_29541 PF13407 Periplasmic binding protein domain Y11_29551 PF02653 Branched-chain amino acid transport system / permease component Y11_29561 PF00005 ABC transporter Y11_29571 PF05025 RbsD / FucU transport protein family Y11_29581 PF02705 K+ potassium transporter Y11_29591 PF17868 AAA lid domain Y11_29591 PF07728 AAA domain (dynein-related subfamily) Y11_29591 PF12592 Protein of unknown function (DUF3763) Y11_29601 PF05762 VWA domain containing CoxE-like protein Y11_29621 PF03590 Aspartate-ammonia ligase Y11_29631 PF01037 Lrp/AsnC ligand binding domain Y11_29641 PF00258 Flavodoxin Y11_29661 PF13932 GidA associated domain Y11_29661 PF01134 Glucose inhibited division protein A Y11_29671 PF02527 rRNA small subunit methyltransferase G Y11_29681 PF03899 ATP synthase I chain Y11_29691 PF00119 ATP synthase A chain Y11_29701 PF00137 ATP synthase subunit C Y11_29711 PF00430 ATP synthase B/B' CF(0) Y11_29721 PF00213 ATP synthase delta (OSCP) subunit Y11_29731 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y11_29731 PF00306 ATP synthase alpha/beta chain, C terminal domain Y11_29731 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_29741 PF00231 ATP synthase Y11_29751 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y11_29751 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_29761 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Y11_29761 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Y11_29771 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_29771 PF12804 MobA-like NTP transferase domain Y11_29781 PF01380 SIS domain Y11_29791 PF12849 PBP superfamily domain Y11_29801 PF00528 Binding-protein-dependent transport system inner membrane component Y11_29811 PF00528 Binding-protein-dependent transport system inner membrane component Y11_29821 PF00005 ABC transporter Y11_29831 PF01895 PhoU domain Y11_29861 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_29871 PF00528 Binding-protein-dependent transport system inner membrane component Y11_29881 PF00528 Binding-protein-dependent transport system inner membrane component Y11_29891 PF13419 Haloacid dehalogenase-like hydrolase Y11_29901 PF00860 Permease family Y11_29921 PF00072 Response regulator receiver domain Y11_29921 PF00196 Bacterial regulatory proteins, luxR family Y11_29931 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_29931 PF00512 His Kinase A (phospho-acceptor) domain Y11_29941 PF03358 NADPH-dependent FMN reductase Y11_29951 PF00672 HAMP domain Y11_29951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_29951 PF02203 Tar ligand binding domain homologue Y11_29961 PF00528 Binding-protein-dependent transport system inner membrane component Y11_29971 PF09383 NIL domain Y11_29971 PF00005 ABC transporter Y11_29991 PF12241 Trans-2-enoyl-CoA reductase catalytic region Y11_29991 PF07055 Enoyl reductase FAD binding domain Y11_29991 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Y11_30001 PF12631 MnmE helical domain Y11_30001 PF01926 50S ribosome-binding GTPase Y11_30001 PF10396 GTP-binding protein TrmE N-terminus Y11_30011 PF02096 60Kd inner membrane protein Y11_30011 PF14849 YidC periplasmic domain Y11_30021 PF01809 Putative membrane protein insertion efficiency factor Y11_30031 PF00825 Ribonuclease P Y11_30051 PF00468 Ribosomal protein L34 Y11_30071 PF00308 Bacterial dnaA protein Y11_30071 PF08299 Bacterial dnaA protein helix-turn-helix Y11_30071 PF11638 DnaA N-terminal domain Y11_30081 PF00712 DNA polymerase III beta subunit, N-terminal domain Y11_30081 PF02768 DNA polymerase III beta subunit, C-terminal domain Y11_30081 PF02767 DNA polymerase III beta subunit, central domain Y11_30091 PF02463 RecF/RecN/SMC N terminal domain Y11_30101 PF01751 Toprim domain Y11_30101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_30101 PF18053 DNA gyrase B subunit insert domain Y11_30101 PF00986 DNA gyrase B subunit, carboxyl terminus Y11_30101 PF00204 DNA gyrase B Y11_30121 PF02423 Ornithine cyclodeaminase/mu-crystallin family Y11_30141 PF00291 Pyridoxal-phosphate dependent enzyme Y11_30151 PF12566 Protein of unknown function (DUF3748) Y11_30151 PF07676 WD40-like Beta Propeller Repeat Y11_30161 PF07119 Protein of unknown function (DUF1375) Y11_30171 PF00011 Hsp20/alpha crystallin family Y11_30181 PF00011 Hsp20/alpha crystallin family Y11_30191 PF01548 Transposase Y11_30191 PF02371 Transposase IS116/IS110/IS902 family Y11_30211 PF06826 Predicted Permease Membrane Region Y11_30211 PF02080 TrkA-C domain Y11_30221 PF00155 Aminotransferase class I and II Y11_30231 PF00128 Alpha amylase, catalytic domain Y11_30241 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Y11_30241 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Y11_30251 PF07690 Major Facilitator Superfamily Y11_30301 PF00583 Acetyltransferase (GNAT) family Y11_30311 PF03352 Methyladenine glycosylase Y11_30321 PF02091 Glycyl-tRNA synthetase alpha subunit Y11_30331 PF02092 Glycyl-tRNA synthetase beta subunit Y11_30331 PF05746 DALR anticodon binding domain Y11_30341 PF11254 Protein of unknown function (DUF3053) Y11_30351 PF02378 Phosphotransferase system, EIIC Y11_30351 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Y11_30351 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_30361 PF08125 Mannitol dehydrogenase C-terminal domain Y11_30361 PF01232 Mannitol dehydrogenase Rossmann domain Y11_30371 PF05068 Mannitol repressor Y11_30391 PF00155 Aminotransferase class I and II Y11_30391 PF00392 Bacterial regulatory proteins, gntR family Y11_30401 PF10928 Protein of unknown function (DUF2810) Y11_30411 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Y11_30421 PF01850 PIN domain Y11_30431 PF03475 3-alpha domain Y11_30431 PF03473 MOSC domain Y11_30441 PF02203 Tar ligand binding domain homologue Y11_30441 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_30441 PF00672 HAMP domain Y11_30461 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Y11_30461 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Y11_30481 PF13247 4Fe-4S dicluster domain Y11_30481 PF09163 Formate dehydrogenase N, transmembrane Y11_30491 PF01292 Prokaryotic cytochrome b561 Y11_30501 PF04216 Protein involved in formate dehydrogenase formation Y11_30511 PF12390 Selenocysteine synthase N terminal Y11_30511 PF03841 L-seryl-tRNA selenium transferase Y11_30521 PF03144 Elongation factor Tu domain 2 Y11_30521 PF09107 Elongation factor SelB, winged helix Y11_30521 PF09106 Elongation factor SelB, winged helix Y11_30521 PF00009 Elongation factor Tu GTP binding domain Y11_30531 PF07690 Major Facilitator Superfamily Y11_30541 PF01757 Acyltransferase family Y11_30571 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_30571 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_30581 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_30581 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_30611 PF13407 Periplasmic binding protein domain Y11_30621 PF00005 ABC transporter Y11_30631 PF02653 Branched-chain amino acid transport system / permease component Y11_30641 PF12833 Helix-turn-helix domain Y11_30651 PF12833 Helix-turn-helix domain Y11_30661 PF14659 Phage integrase, N-terminal SAM-like domain Y11_30661 PF00589 Phage integrase family Y11_30661 PF13356 Arm DNA-binding domain Y11_30711 PF00665 Integrase core domain Y11_30721 PF01695 IstB-like ATP binding protein Y11_30731 PF00324 Amino acid permease Y11_30741 PF00221 Aromatic amino acid lyase Y11_30751 PF17391 Urocanase N-terminal domain Y11_30751 PF17392 Urocanase C-terminal domain Y11_30751 PF01175 Urocanase Rossmann-like domain Y11_30771 PF00577 Outer membrane usher protein Y11_30771 PF13953 PapC C-terminal domain Y11_30771 PF13954 PapC N-terminal domain Y11_30801 PF01238 Phosphomannose isomerase type I Y11_30811 PF00232 Glycosyl hydrolase family 1 Y11_30831 PF02264 LamB porin Y11_30851 PF02378 Phosphotransferase system, EIIC Y11_30861 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_30871 PF02378 Phosphotransferase system, EIIC Y11_30881 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_30891 PF00480 ROK family Y11_30901 PF00356 Bacterial regulatory proteins, lacI family Y11_30941 PF06755 CbtA_toxin of type IV toxin-antitoxin system Y11_30951 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Y11_30961 PF00872 Transposase, Mutator family Y11_30971 PF12146 Serine aminopeptidase, S33 Y11_30981 PF04829 Pre-toxin domain with VENN motif Y11_30981 PF05860 haemagglutination activity domain Y11_30981 PF13018 Extended Signal Peptide of Type V secretion system Y11_30981 PF13332 Hemagglutinin repeat Y11_30991 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Y11_30991 PF17287 POTRA domain Y11_30991 PF08479 POTRA domain, ShlB-type Y11_31011 PF03543 Yersinia/Haemophilus virulence surface antigen Y11_31011 PF13018 Extended Signal Peptide of Type V secretion system Y11_31011 PF02661 Fic/DOC family Y11_31011 PF13332 Hemagglutinin repeat Y11_31011 PF05860 haemagglutination activity domain Y11_31031 PF07690 Major Facilitator Superfamily Y11_31041 PF05231 MASE1 Y11_31041 PF07730 Histidine kinase Y11_31041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_31051 PF00196 Bacterial regulatory proteins, luxR family Y11_31051 PF00072 Response regulator receiver domain Y11_31061 PF08019 Phosphoethanolamine transferase EptA/EptB Y11_31061 PF00884 Sulfatase Y11_31071 PF02566 OsmC-like protein Y11_31081 PF01548 Transposase Y11_31081 PF02371 Transposase IS116/IS110/IS902 family Y11_31101 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_31111 PF00528 Binding-protein-dependent transport system inner membrane component Y11_31121 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_31121 PF00528 Binding-protein-dependent transport system inner membrane component Y11_31131 PF00005 ABC transporter Y11_31131 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_31141 PF00005 ABC transporter Y11_31141 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_31151 PF11658 Cellulose biosynthesis protein BcsG Y11_31161 PF11120 Cellulose biosynthesis protein BcsF Y11_31171 PF10995 Cellulose biosynthesis GIL Y11_31191 PF06564 Cellulose biosynthesis protein BcsQ Y11_31201 PF00535 Glycosyl transferase family 2 Y11_31201 PF07238 PilZ domain Y11_31201 PF03552 Cellulose synthase Y11_31211 PF03170 Bacterial cellulose synthase subunit Y11_31221 PF01270 Glycosyl hydrolases family 8 Y11_31231 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Y11_31241 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Y11_31251 PF17154 Gammaproteobacterial periplasmic sensor domain Y11_31251 PF00563 EAL domain Y11_31251 PF00672 HAMP domain Y11_31251 PF00990 Diguanylate cyclase, GGDEF domain Y11_31261 PF06178 Oligogalacturonate-specific porin protein (KdgM) Y11_31271 PF06917 Periplasmic pectate lyase Y11_31291 PF00375 Sodium:dicarboxylate symporter family Y11_31301 PF05193 Peptidase M16 inactive domain Y11_31301 PF00675 Insulinase (Peptidase family M16) Y11_31311 PF00294 pfkB family carbohydrate kinase Y11_31321 PF01361 Tautomerase enzyme Y11_31341 PF00563 EAL domain Y11_31351 PF05170 AsmA family Y11_31361 PF02611 CDP-diacylglycerol pyrophosphatase Y11_31371 PF03631 Virulence factor BrkB Y11_31381 PF03797 Autotransporter beta-domain Y11_31391 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_31391 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_31401 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Y11_31411 PF01432 Peptidase family M3 Y11_31421 PF04445 Putative SAM-dependent methyltransferase Y11_31431 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Y11_31431 PF08548 Peptidase M10 serralysin C terminal Y11_31431 PF00413 Matrixin Y11_31441 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Y11_31441 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y11_31451 PF00582 Universal stress protein family Y11_31461 PF10625 Universal stress protein B (UspB) Y11_31471 PF01384 Phosphate transporter family Y11_31491 PF00375 Sodium:dicarboxylate symporter family Y11_31521 PF05034 Methylaspartate ammonia-lyase N-terminus Y11_31521 PF07476 Methylaspartate ammonia-lyase C-terminus Y11_31531 PF06368 Methylaspartate mutase E chain (MutE) Y11_31541 PF13941 MutL protein Y11_31551 PF02310 B12 binding domain Y11_31561 PF00288 GHMP kinases N terminal domain Y11_31571 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_31571 PF10414 Sirohaem synthase dimerisation region Y11_31571 PF14824 Sirohaem biosynthesis protein central Y11_31591 PF03466 LysR substrate binding domain Y11_31591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_31601 PF05681 Fumarate hydratase (Fumerase) Y11_31601 PF05683 Fumarase C-terminus Y11_31611 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Y11_31641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_31641 PF03466 LysR substrate binding domain Y11_31651 PF07690 Major Facilitator Superfamily Y11_31661 PF00171 Aldehyde dehydrogenase family Y11_31671 PF04962 KduI/IolB family Y11_31691 PF00294 pfkB family carbohydrate kinase Y11_31701 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_31701 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_31701 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_31711 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Y11_31711 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Y11_31721 PF01261 Xylose isomerase-like TIM barrel Y11_31731 PF00583 Acetyltransferase (GNAT) family Y11_31741 PF02678 Pirin Y11_31741 PF17954 Quercetinase C-terminal cupin domain Y11_31751 PF00356 Bacterial regulatory proteins, lacI family Y11_31751 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_31761 PF02447 GntP family permease Y11_31771 PF01202 Shikimate kinase Y11_31781 PF01914 MarC family integral membrane protein Y11_31791 PF01118 Semialdehyde dehydrogenase, NAD binding domain Y11_31791 PF02774 Semialdehyde dehydrogenase, dimerisation domain Y11_31801 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_31801 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_31801 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_31811 PF03306 Alpha-acetolactate decarboxylase Y11_31821 PF03466 LysR substrate binding domain Y11_31821 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_31831 PF07694 5TMR of 5TMR-LYT Y11_31831 PF06580 Histidine kinase Y11_31841 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y11_31841 PF00128 Alpha amylase, catalytic domain Y11_31841 PF02806 Alpha amylase, C-terminal all-beta domain Y11_31851 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Y11_31851 PF00128 Alpha amylase, catalytic domain Y11_31851 PF18390 Glycogen debranching enzyme C-terminal domain Y11_31861 PF00483 Nucleotidyl transferase Y11_31871 PF08323 Starch synthase catalytic domain Y11_31871 PF00534 Glycosyl transferases group 1 Y11_31881 PF00343 Carbohydrate phosphorylase Y11_31891 PF01266 FAD dependent oxidoreductase Y11_31891 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Y11_31911 PF00455 DeoR C terminal sensor domain Y11_31911 PF08220 DeoR-like helix-turn-helix domain Y11_31921 PF01694 Rhomboid family Y11_31921 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Y11_31931 PF00581 Rhodanese-like domain Y11_31951 PF00196 Bacterial regulatory proteins, luxR family Y11_31951 PF17874 MalT-like TPR region Y11_31961 PF00343 Carbohydrate phosphorylase Y11_31971 PF02446 4-alpha-glucanotransferase Y11_31981 PF01548 Transposase Y11_31981 PF02371 Transposase IS116/IS110/IS902 family Y11_31991 PF01106 NifU-like domain Y11_31991 PF01521 Iron-sulphur cluster biosynthesis Y11_32001 PF00156 Phosphoribosyl transferase domain Y11_32021 PF00561 alpha/beta hydrolase fold Y11_32031 PF07338 Protein of unknown function (DUF1471) Y11_32041 PF09012 FeoC like transcriptional regulator Y11_32051 PF07670 Nucleoside recognition Y11_32051 PF17910 FeoB cytosolic helical domain Y11_32051 PF07664 Ferrous iron transport protein B C terminus Y11_32051 PF02421 Ferrous iron transport protein B Y11_32071 PF04023 FeoA domain Y11_32081 PF09371 Tex-like protein N-terminal domain Y11_32081 PF00575 S1 RNA binding domain Y11_32081 PF17674 HHH domain Y11_32081 PF16921 Tex protein YqgF-like domain Y11_32141 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_32141 PF03449 Transcription elongation factor, N-terminal Y11_32151 PF00072 Response regulator receiver domain Y11_32151 PF00486 Transcriptional regulatory protein, C terminal Y11_32161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_32161 PF00512 His Kinase A (phospho-acceptor) domain Y11_32161 PF00672 HAMP domain Y11_32191 PF01293 Phosphoenolpyruvate carboxykinase Y11_32201 PF01430 Hsp33 protein Y11_32211 PF01479 S4 domain Y11_32221 PF13419 Haloacid dehalogenase-like hydrolase Y11_32231 PF07095 Intracellular growth attenuator protein IgaA Y11_32241 PF07095 Intracellular growth attenuator protein IgaA Y11_32261 PF00293 NUDIX domain Y11_32271 PF00905 Penicillin binding protein transpeptidase domain Y11_32271 PF17092 Penicillin-binding protein OB-like domain Y11_32271 PF00912 Transglycosylase Y11_32321 PF00263 Bacterial type II and III secretion system protein Y11_32321 PF03958 Bacterial type II/III secretion system short domain Y11_32331 PF01202 Shikimate kinase Y11_32341 PF01761 3-dehydroquinate synthase Y11_32351 PF05036 Sporulation related domain Y11_32361 PF02086 D12 class N6 adenine-specific DNA methyltransferase Y11_32371 PF00834 Ribulose-phosphate 3 epimerase family Y11_32381 PF13419 Haloacid dehalogenase-like hydrolase Y11_32391 PF00579 tRNA synthetases class I (W and Y) Y11_32401 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Y11_32401 PF14824 Sirohaem biosynthesis protein central Y11_32401 PF10414 Sirohaem synthase dimerisation region Y11_32411 PF01226 Formate/nitrite transporter Y11_32421 PF13806 Rieske-like [2Fe-2S] domain Y11_32431 PF18267 Rubredoxin NAD+ reductase C-terminal domain Y11_32431 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_32431 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Y11_32431 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Y11_32431 PF04324 BFD-like [2Fe-2S] binding domain Y11_32451 PF07969 Amidohydrolase family Y11_32461 PF07690 Major Facilitator Superfamily Y11_32471 PF00356 Bacterial regulatory proteins, lacI family Y11_32481 PF11975 Family 4 glycosyl hydrolase C-terminal domain Y11_32481 PF02056 Family 4 glycosyl hydrolase Y11_32501 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Y11_32511 PF05872 Bacterial protein of unknown function (DUF853) Y11_32521 PF00117 Glutamine amidotransferase class-I Y11_32531 PF00202 Aminotransferase class-III Y11_32541 PF00202 Aminotransferase class-III Y11_32551 PF12805 FUSC-like inner membrane protein yccS Y11_32561 PF00027 Cyclic nucleotide-binding domain Y11_32561 PF13545 Crp-like helix-turn-helix domain Y11_32571 PF02566 OsmC-like protein Y11_32581 PF00485 Phosphoribulokinase / Uridine kinase family Y11_32591 PF06794 Uncharacterised protein family (UPF0270) Y11_32601 PF00561 alpha/beta hydrolase fold Y11_32611 PF01810 LysE type translocator Y11_32621 PF02567 Phenazine biosynthesis-like protein Y11_32641 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_32651 PF00005 ABC transporter Y11_32661 PF00528 Binding-protein-dependent transport system inner membrane component Y11_32671 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Y11_32691 PF00535 Glycosyl transferase family 2 Y11_32701 PF00005 ABC transporter Y11_32701 PF12848 ABC transporter Y11_32711 PF02525 Flavodoxin-like fold Y11_32721 PF02254 TrkA-N domain Y11_32721 PF00999 Sodium/hydrogen exchanger family Y11_32731 PF09526 Probable metal-binding protein (DUF2387) Y11_32741 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_32751 PF04102 SlyX Y11_32761 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_32761 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y11_32771 PF13309 HTH domain Y11_32771 PF08348 YheO-like PAS domain Y11_32781 PF02635 DsrE/DsrF-like family Y11_32791 PF02635 DsrE/DsrF-like family Y11_32801 PF04077 DsrH like protein Y11_32811 PF00164 Ribosomal protein S12/S23 Y11_32821 PF00177 Ribosomal protein S7p/S5e Y11_32831 PF00009 Elongation factor Tu GTP binding domain Y11_32831 PF03144 Elongation factor Tu domain 2 Y11_32831 PF03764 Elongation factor G, domain IV Y11_32831 PF14492 Elongation Factor G, domain II Y11_32831 PF00679 Elongation factor G C-terminus Y11_32841 PF03143 Elongation factor Tu C-terminal domain Y11_32841 PF03144 Elongation factor Tu domain 2 Y11_32841 PF00009 Elongation factor Tu GTP binding domain Y11_32851 PF04324 BFD-like [2Fe-2S] binding domain Y11_32861 PF00210 Ferritin-like domain Y11_32871 PF00338 Ribosomal protein S10p/S20e Y11_32881 PF00297 Ribosomal protein L3 Y11_32891 PF00573 Ribosomal protein L4/L1 family Y11_32901 PF00276 Ribosomal protein L23 Y11_32911 PF03947 Ribosomal Proteins L2, C-terminal domain Y11_32911 PF00181 Ribosomal Proteins L2, RNA binding domain Y11_32921 PF00203 Ribosomal protein S19 Y11_32931 PF00237 Ribosomal protein L22p/L17e Y11_32941 PF07650 KH domain Y11_32941 PF00189 Ribosomal protein S3, C-terminal domain Y11_32951 PF00252 Ribosomal protein L16p/L10e Y11_32961 PF00831 Ribosomal L29 protein Y11_32971 PF00238 Ribosomal protein L14p/L23e Y11_32981 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Y11_32981 PF00467 KOW motif Y11_32991 PF00673 ribosomal L5P family C-terminus Y11_32991 PF00281 Ribosomal protein L5 Y11_33001 PF00253 Ribosomal protein S14p/S29e Y11_33011 PF00410 Ribosomal protein S8 Y11_33021 PF00347 Ribosomal protein L6 Y11_33031 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Y11_33041 PF00333 Ribosomal protein S5, N-terminal domain Y11_33041 PF03719 Ribosomal protein S5, C-terminal domain Y11_33051 PF00327 Ribosomal protein L30p/L7e Y11_33061 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Y11_33071 PF00344 SecY translocase Y11_33081 PF00444 Ribosomal protein L36 Y11_33091 PF00416 Ribosomal protein S13/S18 Y11_33101 PF00411 Ribosomal protein S11 Y11_33111 PF01479 S4 domain Y11_33111 PF00163 Ribosomal protein S4/S9 N-terminal domain Y11_33121 PF01000 RNA polymerase Rpb3/RpoA insert domain Y11_33121 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Y11_33121 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Y11_33131 PF01196 Ribosomal protein L17 Y11_33141 PF09350 Domain of unknown function (DUF1992) Y11_33151 PF13411 MerR HTH family regulatory protein Y11_33161 PF03889 Alternative ribosome-rescue factor A Y11_33191 PF01741 Large-conductance mechanosensitive channel, MscL Y11_33201 PF02254 TrkA-N domain Y11_33201 PF02080 TrkA-C domain Y11_33211 PF01029 NusB family Y11_33211 PF01189 16S rRNA methyltransferase RsmB/F Y11_33221 PF02911 Formyl transferase, C-terminal domain Y11_33221 PF00551 Formyl transferase Y11_33231 PF01327 Polypeptide deformylase Y11_33241 PF17782 DprA winged helix domain Y11_33241 PF02481 DNA recombination-mediator protein A Y11_33251 PF04361 Protein of unknown function (DUF494) Y11_33261 PF01396 Topoisomerase DNA binding C4 zinc finger Y11_33271 PF01300 Telomere recombination Y11_33281 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Y11_33281 PF01488 Shikimate / quinate 5-dehydrogenase Y11_33281 PF08501 Shikimate dehydrogenase substrate binding domain Y11_33291 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_33331 PF13407 Periplasmic binding protein domain Y11_33341 PF00005 ABC transporter Y11_33351 PF02653 Branched-chain amino acid transport system / permease component Y11_33361 PF02653 Branched-chain amino acid transport system / permease component Y11_33371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_33371 PF03466 LysR substrate binding domain Y11_33381 PF04219 Protein of unknown function, DUF Y11_33391 PF13335 Magnesium chelatase, subunit ChlI C-terminal Y11_33391 PF01078 Magnesium chelatase, subunit ChlI Y11_33411 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_33411 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_33411 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_33431 PF01063 Amino-transferase class IV Y11_33451 PF00920 Dehydratase family Y11_33461 PF00585 C-terminal regulatory domain of Threonine dehydratase Y11_33461 PF00291 Pyridoxal-phosphate dependent enzyme Y11_33491 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_33491 PF03466 LysR substrate binding domain Y11_33501 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Y11_33501 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Y11_33511 PF06958 S-type Pyocin Y11_33521 PF01320 Colicin immunity protein / pyocin immunity protein Y11_33531 PF01320 Colicin immunity protein / pyocin immunity protein Y11_33551 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_33551 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_33571 PF00577 Outer membrane usher protein Y11_33571 PF13953 PapC C-terminal domain Y11_33571 PF13954 PapC N-terminal domain Y11_33581 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Y11_33581 PF02753 Pili assembly chaperone PapD, C-terminal domain Y11_33611 PF13361 UvrD-like helicase C-terminal domain Y11_33611 PF00580 UvrD/REP helicase N-terminal domain Y11_33621 PF00295 Glycosyl hydrolases family 28 Y11_33631 PF02541 Ppx/GppA phosphatase family Y11_33641 PF00270 DEAD/DEAH box helicase Y11_33641 PF00271 Helicase conserved C-terminal domain Y11_33651 PF00085 Thioredoxin Y11_33661 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_33661 PF07497 Rho termination factor, RNA-binding domain Y11_33661 PF07498 Rho termination factor, N-terminal domain Y11_33671 PF00953 Glycosyl transferase family 4 Y11_33681 PF02706 Chain length determinant protein Y11_33691 PF02350 UDP-N-acetylglucosamine 2-epimerase Y11_33701 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Y11_33701 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Y11_33701 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Y11_33711 PF16363 GDP-mannose 4,6 dehydratase Y11_33721 PF00483 Nucleotidyl transferase Y11_33741 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Y11_33751 PF01943 Polysaccharide biosynthesis protein Y11_33761 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 Y11_33771 PF06899 WzyE protein, O-antigen assembly polymerase Y11_33781 PF03808 Glycosyl transferase WecB/TagA/CpsF family Y11_33791 PF00324 Amino acid permease Y11_33801 PF00324 Amino acid permease Y11_33821 PF01548 Transposase Y11_33821 PF02371 Transposase IS116/IS110/IS902 family Y11_33831 PF07719 Tetratricopeptide repeat Y11_33831 PF07219 HemY protein N-terminus Y11_33841 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Y11_33851 PF02602 Uroporphyrinogen-III synthase HemD Y11_33861 PF03900 Porphobilinogen deaminase, C-terminal domain Y11_33861 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Y11_33881 PF01295 Adenylate cyclase, class-I Y11_33881 PF12633 Adenylate cyclase NT domain Y11_33891 PF01491 Frataxin-like domain Y11_33901 PF13627 Prokaryotic lipoprotein-attachment site Y11_33911 PF01678 Diaminopimelate epimerase Y11_33921 PF04340 Protein of unknown function, DUF484 Y11_33931 PF02899 Phage integrase, N-terminal SAM-like domain Y11_33931 PF00589 Phage integrase family Y11_33941 PF13419 Haloacid dehalogenase-like hydrolase Y11_33951 PF00580 UvrD/REP helicase N-terminal domain Y11_33951 PF13361 UvrD-like helicase C-terminal domain Y11_33981 PF09370 Phosphoenolpyruvate hydrolase-like Y11_33991 PF01544 CorA-like Mg2+ transporter protein Y11_34001 PF00892 EamA-like transporter family Y11_34011 PF03061 Thioesterase superfamily Y11_34021 PF02253 Phospholipase A1 Y11_34031 PF09382 RQC domain Y11_34031 PF00270 DEAD/DEAH box helicase Y11_34031 PF00570 HRDC domain Y11_34031 PF00271 Helicase conserved C-terminal domain Y11_34031 PF16124 RecQ zinc-binding Y11_34041 PF01810 LysE type translocator Y11_34051 PF01810 LysE type translocator Y11_34061 PF12146 Serine aminopeptidase, S33 Y11_34081 PF01548 Transposase Y11_34081 PF02371 Transposase IS116/IS110/IS902 family Y11_34091 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_34101 PF07690 Major Facilitator Superfamily Y11_34121 PF04324 BFD-like [2Fe-2S] binding domain Y11_34121 PF01266 FAD dependent oxidoreductase Y11_34131 PF00890 FAD binding domain Y11_34141 PF02754 Cysteine-rich domain Y11_34141 PF13183 4Fe-4S dicluster domain Y11_34151 PF08786 DcrB Y11_34161 PF02592 Putative vitamin uptake transporter Y11_34171 PF01206 Sulfurtransferase TusA Y11_34181 PF00403 Heavy-metal-associated domain Y11_34191 PF07947 YhhN family Y11_34221 PF06611 Protein of unknown function (DUF1145) Y11_34251 PF00448 SRP54-type protein, GTPase domain Y11_34251 PF02881 SRP54-type protein, helical bundle domain Y11_34261 PF00005 ABC transporter Y11_34271 PF02687 FtsX-like permease family Y11_34271 PF18075 FtsX extracellular domain Y11_34281 PF00140 Sigma-70 factor, region 1.2 Y11_34281 PF04542 Sigma-70 region 2 Y11_34281 PF04545 Sigma-70, region 4 Y11_34311 PF12568 Acetyltransferase (GNAT) domain, PanZ Y11_34321 PF13458 Periplasmic binding protein Y11_34331 PF02653 Branched-chain amino acid transport system / permease component Y11_34341 PF11862 Domain of unknown function (DUF3382) Y11_34341 PF02653 Branched-chain amino acid transport system / permease component Y11_34351 PF12399 Branched-chain amino acid ATP-binding cassette transporter Y11_34351 PF00005 ABC transporter Y11_34361 PF00005 ABC transporter Y11_34441 PF13416 Bacterial extracellular solute-binding protein Y11_34451 PF13416 Bacterial extracellular solute-binding protein Y11_34461 PF00528 Binding-protein-dependent transport system inner membrane component Y11_34471 PF00528 Binding-protein-dependent transport system inner membrane component Y11_34481 PF17912 MalK OB fold domain Y11_34481 PF00005 ABC transporter Y11_34491 PF03009 Glycerophosphoryl diester phosphodiesterase family Y11_34501 PF03547 Membrane transport protein Y11_34511 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_34511 PF03466 LysR substrate binding domain Y11_34521 PF08267 Cobalamin-independent synthase, N-terminal domain Y11_34521 PF01717 Cobalamin-independent synthase, Catalytic domain Y11_34531 PF01738 Dienelactone hydrolase family Y11_34541 PF01048 Phosphorylase superfamily Y11_34601 PF13722 5TM C-terminal transporter carbon starvation CstA Y11_34601 PF02554 Carbon starvation protein CstA Y11_34611 PF09335 SNARE associated Golgi protein Y11_34621 PF02646 RmuC family Y11_34631 PF01209 ubiE/COQ5 methyltransferase family Y11_34641 PF02036 SCP-2 sterol transfer family Y11_34651 PF03109 ABC1 family Y11_34661 PF02416 mttA/Hcf106 family Y11_34681 PF00902 Sec-independent protein translocase protein (TatC) Y11_34691 PF01026 TatD related DNase Y11_34701 PF00490 Delta-aminolevulinic acid dehydratase Y11_34711 PF02357 Transcription termination factor nusG Y11_34721 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Y11_34731 PF00175 Oxidoreductase NAD-binding domain Y11_34731 PF00970 Oxidoreductase FAD-binding domain Y11_34741 PF02803 Thiolase, C-terminal domain Y11_34741 PF00108 Thiolase, N-terminal domain Y11_34751 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Y11_34751 PF00378 Enoyl-CoA hydratase/isomerase Y11_34751 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Y11_34761 PF00557 Metallopeptidase family M24 Y11_34771 PF09186 Domain of unknown function (DUF1949) Y11_34771 PF01205 Uncharacterized protein family UPF0029 Y11_34781 PF02386 Cation transport protein Y11_34791 PF12724 Flavodoxin domain Y11_34811 PF02371 Transposase IS116/IS110/IS902 family Y11_34811 PF01548 Transposase Y11_34821 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Y11_34821 PF01565 FAD binding domain Y11_34831 PF02237 Biotin protein ligase C terminal domain Y11_34831 PF03099 Biotin/lipoate A/B protein ligase family Y11_34831 PF08279 HTH domain Y11_34841 PF00485 Phosphoribulokinase / Uridine kinase family Y11_34861 PF13673 Acetyltransferase (GNAT) domain Y11_34871 PF03143 Elongation factor Tu C-terminal domain Y11_34871 PF03144 Elongation factor Tu domain 2 Y11_34871 PF00009 Elongation factor Tu GTP binding domain Y11_34881 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Y11_34891 PF00467 KOW motif Y11_34891 PF02357 Transcription termination factor nusG Y11_34901 PF03946 Ribosomal protein L11, N-terminal domain Y11_34901 PF00298 Ribosomal protein L11, RNA binding domain Y11_34911 PF00687 Ribosomal protein L1p/L10e family Y11_34921 PF00466 Ribosomal protein L10 Y11_34931 PF00542 Ribosomal protein L7/L12 C-terminal domain Y11_34931 PF16320 Ribosomal protein L7/L12 dimerisation domain Y11_34941 PF04563 RNA polymerase beta subunit Y11_34941 PF04560 RNA polymerase Rpb2, domain 7 Y11_34941 PF00562 RNA polymerase Rpb2, domain 6 Y11_34941 PF10385 RNA polymerase beta subunit external 1 domain Y11_34941 PF04565 RNA polymerase Rpb2, domain 3 Y11_34941 PF04561 RNA polymerase Rpb2, domain 2 Y11_34951 PF00623 RNA polymerase Rpb1, domain 2 Y11_34951 PF04997 RNA polymerase Rpb1, domain 1 Y11_34951 PF04983 RNA polymerase Rpb1, domain 3 Y11_34951 PF05000 RNA polymerase Rpb1, domain 4 Y11_34951 PF04998 RNA polymerase Rpb1, domain 5 Y11_34961 PF01548 Transposase Y11_34961 PF02371 Transposase IS116/IS110/IS902 family Y11_34971 PF06968 Biotin and Thiamin Synthesis associated domain Y11_34971 PF04055 Radical SAM superfamily Y11_34981 PF05690 Thiazole biosynthesis protein ThiG Y11_34991 PF02597 ThiS family Y11_35001 PF00899 ThiF family Y11_35011 PF02581 Thiamine monophosphate synthase Y11_35021 PF01964 Radical SAM ThiC family Y11_35021 PF13667 ThiC-associated domain Y11_35031 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Y11_35041 PF00293 NUDIX domain Y11_35041 PF09297 NADH pyrophosphatase zinc ribbon domain Y11_35051 PF01208 Uroporphyrinogen decarboxylase (URO-D) Y11_35061 PF04493 Endonuclease V Y11_35071 PF04222 Protein of unknown function (DUF416) Y11_35081 PF00216 Bacterial DNA-binding protein Y11_35091 PF07356 Protein of unknown function (DUF1481) Y11_35101 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Y11_35101 PF02844 Phosphoribosylglycinamide synthetase, N domain Y11_35101 PF02843 Phosphoribosylglycinamide synthetase, C domain Y11_35111 PF01808 AICARFT/IMPCHase bienzyme Y11_35111 PF02142 MGS-like domain Y11_35131 PF00474 Sodium:solute symporter family Y11_35141 PF04341 Protein of unknown function, DUF485 Y11_35151 PF13193 AMP-binding enzyme C-terminal domain Y11_35151 PF16177 Acetyl-coenzyme A synthetase N-terminus Y11_35151 PF00501 AMP-binding enzyme Y11_35161 PF00375 Sodium:dicarboxylate symporter family Y11_35171 PF00072 Response regulator receiver domain Y11_35171 PF00196 Bacterial regulatory proteins, luxR family Y11_35181 PF00072 Response regulator receiver domain Y11_35181 PF00512 His Kinase A (phospho-acceptor) domain Y11_35181 PF01627 Hpt domain Y11_35181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_35181 PF00672 HAMP domain Y11_35181 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y11_35261 PF04888 Secretion system effector C (SseC) like family Y11_35311 PF14525 AraC-binding-like domain Y11_35311 PF12833 Helix-turn-helix domain Y11_35351 PF01514 Secretory protein of YscJ/FliF family Y11_35391 PF00771 FHIPEP family Y11_35401 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_35401 PF18269 T3SS EscN ATPase C-terminal domain Y11_35431 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_35451 PF00813 FliP family Y11_35461 PF01313 Bacterial export proteins, family 3 Y11_35471 PF01311 Bacterial export proteins, family 1 Y11_35481 PF01311 Bacterial export proteins, family 1 Y11_35491 PF01312 FlhB HrpN YscU SpaS Family Y11_35501 PF04143 Sulphur transport Y11_35511 PF04143 Sulphur transport Y11_35521 PF01206 Sulfurtransferase TusA Y11_35571 PF04773 FecR protein Y11_35571 PF16220 Domain of unknown function (DUF4880) Y11_35581 PF07715 TonB-dependent Receptor Plug Domain Y11_35591 PF00005 ABC transporter Y11_35591 PF06472 ABC transporter transmembrane region 2 Y11_35601 PF00675 Insulinase (Peptidase family M16) Y11_35601 PF05193 Peptidase M16 inactive domain Y11_35611 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Y11_35621 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Y11_35631 PF00924 Mechanosensitive ion channel Y11_35631 PF12795 Mechanosensitive ion channel porin domain Y11_35631 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_35641 PF07715 TonB-dependent Receptor Plug Domain Y11_35641 PF00593 TonB dependent receptor Y11_35661 PF00155 Aminotransferase class I and II Y11_35661 PF00392 Bacterial regulatory proteins, gntR family Y11_35671 PF00005 ABC transporter Y11_35681 PF01032 FecCD transport family Y11_35691 PF01497 Periplasmic binding protein Y11_35701 PF05171 Haemin-degrading HemS.ChuX domain Y11_35711 PF07715 TonB-dependent Receptor Plug Domain Y11_35711 PF00593 TonB dependent receptor Y11_35721 PF10636 Hemin uptake protein hemP Y11_35741 PF06228 Haem utilisation ChuX/HutX Y11_35751 PF04055 Radical SAM superfamily Y11_35761 PF00291 Pyridoxal-phosphate dependent enzyme Y11_35771 PF01490 Transmembrane amino acid transporter protein Y11_35781 PF00871 Acetokinase family Y11_35791 PF01228 Glycine radical Y11_35791 PF02901 Pyruvate formate lyase-like Y11_35811 PF02595 Glycerate kinase family Y11_35821 PF02595 Glycerate kinase family Y11_35831 PF02683 Cytochrome C biogenesis protein transmembrane region Y11_35831 PF11412 Disulphide bond corrector protein DsbC Y11_35841 PF03091 CutA1 divalent ion tolerance protein Y11_35851 PF03605 Anaerobic c4-dicarboxylate membrane transporter Y11_35861 PF10415 Fumarase C C-terminus Y11_35861 PF00206 Lyase Y11_35871 PF04186 FxsA cytoplasmic membrane protein Y11_35881 PF00166 Chaperonin 10 Kd subunit Y11_35891 PF00118 TCP-1/cpn60 chaperonin family Y11_35901 PF13698 Domain of unknown function (DUF4156) Y11_35911 PF04055 Radical SAM superfamily Y11_35921 PF08207 Elongation factor P (EF-P) KOW-like domain Y11_35921 PF01132 Elongation factor P (EF-P) OB domain Y11_35921 PF09285 Elongation factor P, C-terminal Y11_35931 PF08085 Entericidin EcnA/B family Y11_35941 PF00893 Small Multidrug Resistance protein Y11_35951 PF08212 Lipocalin-like domain Y11_35961 PF02313 Fumarate reductase subunit D Y11_35971 PF02300 Fumarate reductase subunit C Y11_35981 PF13085 2Fe-2S iron-sulfur cluster binding domain Y11_35981 PF13183 4Fe-4S dicluster domain Y11_35991 PF02910 Fumarate reductase flavoprotein C-term Y11_35991 PF00890 FAD binding domain Y11_36001 PF00152 tRNA synthetases class II (D, K and N) Y11_36011 PF12794 Mechanosensitive ion channel inner membrane domain 1 Y11_36011 PF00924 Mechanosensitive ion channel Y11_36011 PF12795 Mechanosensitive ion channel porin domain Y11_36021 PF02666 Phosphatidylserine decarboxylase Y11_36031 PF03193 RsgA GTPase Y11_36041 PF00929 Exonuclease Y11_36051 PF08331 Domain of unknown function (DUF1730) Y11_36061 PF01256 Carbohydrate kinase Y11_36061 PF03853 YjeF-related protein N-terminus Y11_36071 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Y11_36081 PF01520 N-acetylmuramoyl-L-alanine amidase Y11_36091 PF08676 MutL C terminal dimerisation domain Y11_36091 PF01119 DNA mismatch repair protein, C-terminal domain Y11_36121 PF17209 Hfq protein Y11_36131 PF01926 50S ribosome-binding GTPase Y11_36131 PF13167 GTP-binding GTPase N-terminal Y11_36131 PF16360 GTP-binding GTPase Middle Region Y11_36141 PF01145 SPFH domain / Band 7 family Y11_36141 PF12221 Bacterial membrane protein N terminal Y11_36151 PF01145 SPFH domain / Band 7 family Y11_36161 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) Y11_36171 PF00709 Adenylosuccinate synthetase Y11_36181 PF02082 Transcriptional regulator Y11_36191 PF00773 RNB domain Y11_36191 PF08461 Ribonuclease R winged-helix domain Y11_36191 PF08206 Ribonuclease B OB domain Y11_36191 PF00575 S1 RNA binding domain Y11_36191 PF17876 Cold shock domain Y11_36201 PF08032 RNA 2'-O ribose methyltransferase substrate binding Y11_36201 PF00588 SpoU rRNA Methylase family Y11_36221 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_36221 PF18158 Adaptive response protein AidB N-terminal domain Y11_36221 PF02770 Acyl-CoA dehydrogenase, middle domain Y11_36231 PF18158 Adaptive response protein AidB N-terminal domain Y11_36231 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Y11_36231 PF02770 Acyl-CoA dehydrogenase, middle domain Y11_36241 PF07338 Protein of unknown function (DUF1471) Y11_36251 PF00326 Prolyl oligopeptidase family Y11_36271 PF01250 Ribosomal protein S6 Y11_36281 PF00436 Single-strand binding protein family Y11_36291 PF01084 Ribosomal protein S18 Y11_36301 PF01281 Ribosomal protein L9, N-terminal domain Y11_36301 PF03948 Ribosomal protein L9, C-terminal domain Y11_36321 PF08525 Opacity-associated protein A N-terminal motif Y11_36321 PF04225 Opacity-associated protein A LysM-like domain Y11_36331 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Y11_36331 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_36341 PF04405 Domain of Unknown function (DUF542) Y11_36341 PF01814 Hemerythrin HHE cation binding domain Y11_36351 PF02872 5'-nucleotidase, C-terminal domain Y11_36351 PF00149 Calcineurin-like phosphoesterase Y11_36361 PF00459 Inositol monophosphatase family Y11_36371 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Y11_36381 PF06526 Protein of unknown function (DUF1107) Y11_36391 PF03471 Transporter associated domain Y11_36391 PF01595 Cyclin M transmembrane N-terminal domain Y11_36391 PF00571 CBS domain Y11_36401 PF01625 Peptide methionine sulfoxide reductase Y11_36421 PF07244 Surface antigen variable number repeat Y11_36421 PF17243 POTRA domain TamA domain 1 Y11_36421 PF01103 Surface antigen Y11_36431 PF04357 TamB, inner membrane protein subunit of TAM complex Y11_36441 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like Y11_36451 PF00719 Inorganic pyrophosphatase Y11_36471 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_36471 PF02203 Tar ligand binding domain homologue Y11_36471 PF00672 HAMP domain Y11_36481 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Y11_36491 PF02875 Mur ligase family, glutamate ligase domain Y11_36491 PF01225 Mur ligase family, catalytic domain Y11_36491 PF08245 Mur ligase middle domain Y11_36511 PF02863 Arginine repressor, C-terminal domain Y11_36511 PF01316 Arginine repressor, DNA binding domain Y11_36521 PF00056 lactate/malate dehydrogenase, NAD binding domain Y11_36521 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Y11_36541 PF00348 Polyprenyl synthetase Y11_36551 PF00829 Ribosomal prokaryotic L21 protein Y11_36561 PF01016 Ribosomal L27 protein Y11_36571 PF00892 EamA-like transporter family Y11_36581 PF01926 50S ribosome-binding GTPase Y11_36581 PF01018 GTP1/OBG Y11_36591 PF00672 HAMP domain Y11_36591 PF00512 His Kinase A (phospho-acceptor) domain Y11_36591 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_36601 PF00486 Transcriptional regulatory protein, C terminal Y11_36601 PF00072 Response regulator receiver domain Y11_36611 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Y11_36621 PF03449 Transcription elongation factor, N-terminal Y11_36621 PF01272 Transcription elongation factor, GreA/GreB, C-term Y11_36631 PF01985 CRS1 / YhbY (CRM) domain Y11_36641 PF01728 FtsJ-like methyltransferase Y11_36651 PF17862 AAA+ lid domain Y11_36651 PF06480 FtsH Extracellular Y11_36651 PF00004 ATPase family associated with various cellular activities (AAA) Y11_36651 PF01434 Peptidase family M41 Y11_36661 PF00809 Pterin binding enzyme Y11_36671 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Y11_36671 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Y11_36671 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Y11_36671 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Y11_36681 PF03840 Preprotein translocase SecG subunit Y11_36691 PF02576 RimP N-terminal domain Y11_36691 PF17384 RimP C-terminal SH3 domain Y11_36701 PF00575 S1 RNA binding domain Y11_36701 PF08529 NusA N-terminal domain Y11_36701 PF13184 NusA-like KH domain Y11_36711 PF03144 Elongation factor Tu domain 2 Y11_36711 PF00009 Elongation factor Tu GTP binding domain Y11_36711 PF08364 Bacterial translation initiation factor IF-2 associated region Y11_36711 PF04760 Translation initiation factor IF-2, N-terminal region Y11_36711 PF11987 Translation-initiation factor 2 Y11_36721 PF02033 Ribosome-binding factor A Y11_36731 PF01509 TruB family pseudouridylate synthase (N terminal domain) Y11_36731 PF16198 tRNA pseudouridylate synthase B C-terminal domain Y11_36731 PF09157 Pseudouridine synthase II TruB, C-terminal Y11_36741 PF00312 Ribosomal protein S15 Y11_36751 PF00575 S1 RNA binding domain Y11_36751 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Y11_36751 PF03725 3' exoribonuclease family, domain 2 Y11_36751 PF00013 KH domain Y11_36751 PF01138 3' exoribonuclease family, domain 1 Y11_36761 PF07719 Tetratricopeptide repeat Y11_36761 PF13181 Tetratricopeptide repeat Y11_36771 PF03880 DbpA RNA binding domain Y11_36771 PF00270 DEAD/DEAH box helicase Y11_36771 PF12343 Cold shock protein DEAD box A Y11_36771 PF00271 Helicase conserved C-terminal domain Y11_36791 PF00296 Luciferase-like monooxygenase Y11_36801 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Y11_36801 PF02321 Outer membrane efflux protein Y11_36821 PF03313 Serine dehydratase alpha chain Y11_36861 PF13508 Acetyltransferase (GNAT) domain Y11_36871 PF01541 GIY-YIG catalytic domain Y11_36881 PF13520 Amino acid permease Y11_36891 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Y11_36891 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Y11_36891 PF01276 Orn/Lys/Arg decarboxylase, major domain Y11_36911 PF07940 Heparinase II/III-like protein Y11_36911 PF05426 Alginate lyase Y11_36931 PF13416 Bacterial extracellular solute-binding protein Y11_36951 PF00528 Binding-protein-dependent transport system inner membrane component Y11_36961 PF03459 TOBE domain Y11_36961 PF17912 MalK OB fold domain Y11_36961 PF00005 ABC transporter Y11_37001 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Y11_37011 PF13460 NAD(P)H-binding Y11_37021 PF12706 Beta-lactamase superfamily domain Y11_37051 PF07969 Amidohydrolase family Y11_37061 PF00005 ABC transporter Y11_37071 PF00005 ABC transporter Y11_37081 PF06007 Phosphonate metabolism protein PhnJ Y11_37091 PF05861 Bacterial phosphonate metabolism protein (PhnI) Y11_37101 PF05861 Bacterial phosphonate metabolism protein (PhnI) Y11_37111 PF05845 Bacterial phosphonate metabolism protein (PhnH) Y11_37121 PF06754 Phosphonate metabolism protein PhnG Y11_37131 PF07702 UTRA domain Y11_37131 PF00392 Bacterial regulatory proteins, gntR family Y11_37171 PF13597 Anaerobic ribonucleoside-triphosphate reductase Y11_37171 PF03477 ATP cone domain Y11_37201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_37201 PF00005 ABC transporter Y11_37211 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Y11_37211 PF00005 ABC transporter Y11_37231 PF00528 Binding-protein-dependent transport system inner membrane component Y11_37261 PF04074 YhcH/YjgK/YiaL Y11_37271 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Y11_37271 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Y11_37281 PF06877 Regulator of ribonuclease activity B Y11_37311 PF00583 Acetyltransferase (GNAT) family Y11_37321 PF10458 Valyl tRNA synthetase tRNA binding arm Y11_37321 PF08264 Anticodon-binding domain of tRNA Y11_37321 PF00133 tRNA synthetases class I (I, L, M and V) Y11_37331 PF04364 DNA polymerase III chi subunit, HolC Y11_37341 PF02789 Cytosol aminopeptidase family, N-terminal domain Y11_37341 PF00883 Cytosol aminopeptidase family, catalytic domain Y11_37351 PF03739 Lipopolysaccharide export system permease LptF/LptG Y11_37361 PF03739 Lipopolysaccharide export system permease LptF/LptG Y11_37431 PF01695 IstB-like ATP binding protein Y11_37441 PF00665 Integrase core domain Y11_37451 PF13091 PLD-like domain Y11_37451 PF13087 AAA domain Y11_37461 PF00583 Acetyltransferase (GNAT) family Y11_37551 PF10696 Protein of unknown function (DUF2501) Y11_37571 PF03992 Antibiotic biosynthesis monooxygenase Y11_37581 PF01791 DeoC/LacD family aldolase Y11_37591 PF13407 Periplasmic binding protein domain Y11_37601 PF02653 Branched-chain amino acid transport system / permease component Y11_37611 PF02653 Branched-chain amino acid transport system / permease component Y11_37621 PF00005 ABC transporter Y11_37631 PF00325 Bacterial regulatory proteins, crp family Y11_37631 PF04198 Putative sugar-binding domain Y11_37641 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Y11_37641 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Y11_37651 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Y11_37671 PF13520 Amino acid permease Y11_37691 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Y11_37701 PF00873 AcrB/AcrD/AcrF family Y11_37711 PF00465 Iron-containing alcohol dehydrogenase Y11_37721 PF02733 Dak1 domain Y11_37731 PF02734 DAK2 domain Y11_37741 PF05524 PEP-utilising enzyme, N-terminal Y11_37741 PF00391 PEP-utilising enzyme, mobile domain Y11_37741 PF00381 PTS HPr component phosphorylation site Y11_37741 PF03610 PTS system fructose IIA component Y11_37761 PF02543 Carbamoyltransferase N-terminus Y11_37761 PF16861 Carbamoyltransferase C-terminus Y11_37811 PF01095 Pectinesterase Y11_37821 PF02954 Bacterial regulatory protein, Fis family Y11_37821 PF00989 PAS fold Y11_37821 PF00158 Sigma-54 interaction domain Y11_37831 PF13407 Periplasmic binding protein domain Y11_37831 PF00356 Bacterial regulatory proteins, lacI family Y11_37841 PF00251 Glycosyl hydrolases family 32 N-terminal domain Y11_37841 PF08244 Glycosyl hydrolases family 32 C terminal Y11_37851 PF00367 phosphotransferase system, EIIB Y11_37851 PF02378 Phosphotransferase system, EIIC Y11_37861 PF11471 Maltoporin periplasmic N-terminal extension Y11_37861 PF02264 LamB porin Y11_37871 PF00294 pfkB family carbohydrate kinase Y11_37891 PF07660 Secretin and TonB N terminus short domain Y11_37891 PF07715 TonB-dependent Receptor Plug Domain Y11_37891 PF00593 TonB dependent receptor Y11_37901 PF00990 Diguanylate cyclase, GGDEF domain Y11_37931 PF07256 Protein of unknown function (DUF1435) Y11_37941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_37941 PF03466 LysR substrate binding domain Y11_37951 PF00248 Aldo/keto reductase family Y11_37961 PF08468 Methyltransferase small domain N-terminal Y11_37961 PF05175 Methyltransferase small domain Y11_37971 PF03603 DNA polymerase III psi subunit Y11_37981 PF00583 Acetyltransferase (GNAT) family Y11_37991 PF16658 Class II release factor RF3, C-terminal domain Y11_37991 PF00009 Elongation factor Tu GTP binding domain Y11_37991 PF03144 Elongation factor Tu domain 2 Y11_38001 PF04972 BON domain Y11_38011 PF07043 Protein of unknown function (DUF1328) Y11_38021 PF01734 Patatin-like phospholipase Y11_38031 PF01026 TatD related DNase Y11_38041 PF01773 Na+ dependent nucleoside transporter N-terminus Y11_38041 PF07670 Nucleoside recognition Y11_38041 PF07662 Na+ dependent nucleoside transporter C-terminus Y11_38051 PF01791 DeoC/LacD family aldolase Y11_38061 PF02885 Glycosyl transferase family, helical bundle domain Y11_38061 PF00591 Glycosyl transferase family, a/b domain Y11_38061 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Y11_38071 PF01676 Metalloenzyme superfamily Y11_38081 PF01048 Phosphorylase superfamily Y11_38091 PF10144 Bacterial virulence factor haemolysin Y11_38101 PF18429 Domain of unknown function (DUF5609) Y11_38111 PF18073 Rubredoxin metal binding domain Y11_38131 PF13521 AAA domain Y11_38131 PF01381 Helix-turn-helix Y11_38141 PF08240 Alcohol dehydrogenase GroES-like domain Y11_38141 PF00107 Zinc-binding dehydrogenase Y11_38151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_38151 PF03466 LysR substrate binding domain Y11_38171 PF12848 ABC transporter Y11_38171 PF00005 ABC transporter Y11_38181 PF00691 OmpA family Y11_38191 PF00990 Diguanylate cyclase, GGDEF domain Y11_38191 PF17152 Periplasmic sensor domain Y11_38211 PF00690 Cation transporter/ATPase, N-terminus Y11_38211 PF00689 Cation transporting ATPase, C-terminus Y11_38221 PF14718 Soluble lytic murein transglycosylase L domain Y11_38221 PF01464 Transglycosylase SLT domain Y11_38231 PF01371 Trp repressor protein Y11_38241 PF01931 Protein of unknown function DUF84 Y11_38251 PF00300 Histidine phosphatase superfamily (branch 1) Y11_38261 PF12833 Helix-turn-helix domain Y11_38261 PF06445 GyrI-like small molecule binding domain Y11_38271 PF05981 CreA protein Y11_38281 PF00486 Transcriptional regulatory protein, C terminal Y11_38281 PF00072 Response regulator receiver domain Y11_38311 PF03447 Homoserine dehydrogenase, NAD binding domain Y11_38311 PF00742 Homoserine dehydrogenase Y11_38311 PF01842 ACT domain Y11_38311 PF13840 ACT domain Y11_38311 PF00696 Amino acid kinase family Y11_38321 PF08544 GHMP kinases C terminal Y11_38321 PF00288 GHMP kinases N terminal domain Y11_38331 PF00291 Pyridoxal-phosphate dependent enzyme Y11_38331 PF14821 Threonine synthase N terminus Y11_38341 PF01548 Transposase Y11_38341 PF02371 Transposase IS116/IS110/IS902 family Y11_38351 PF03883 Peroxide stress protein YaaA Y11_38361 PF00923 Transaldolase/Fructose-6-phosphate aldolase Y11_38371 PF00994 Probable molybdopterin binding domain Y11_38381 PF07690 Major Facilitator Superfamily Y11_38391 PF00030 Beta/Gamma crystallin Y11_38401 PF01184 GPR1/FUN34/yaaH family Y11_38411 PF00012 Hsp70 protein Y11_38421 PF01556 DnaJ C terminal domain Y11_38421 PF00684 DnaJ central domain Y11_38421 PF00226 DnaJ domain Y11_38431 PF06965 Na+/H+ antiporter 1 Y11_38441 PF03466 LysR substrate binding domain Y11_38441 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_38451 PF01649 Ribosomal protein S20 Y11_38461 PF06574 FAD synthetase Y11_38461 PF01687 Riboflavin kinase Y11_38471 PF08264 Anticodon-binding domain of tRNA Y11_38471 PF00133 tRNA synthetases class I (I, L, M and V) Y11_38471 PF06827 Zinc finger found in FPG and IleRS Y11_38481 PF01252 Signal peptidase (SPase) II Y11_38491 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Y11_38501 PF02401 LytB protein Y11_38511 PF05173 Dihydrodipicolinate reductase, C-terminus Y11_38511 PF01113 Dihydrodipicolinate reductase, N-terminus Y11_38521 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Y11_38521 PF00117 Glutamine amidotransferase class-I Y11_38531 PF02142 MGS-like domain Y11_38531 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Y11_38531 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y11_38541 PF01810 LysE type translocator Y11_38551 PF06738 Putative threonine/serine exporter Y11_38561 PF12821 Threonine/Serine exporter, ThrE Y11_38571 PF00186 Dihydrofolate reductase Y11_38581 PF00149 Calcineurin-like phosphoesterase Y11_38591 PF04379 ApaG domain Y11_38601 PF00398 Ribosomal RNA adenine dimethylase Y11_38611 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Y11_38621 PF09312 SurA N-terminal domain Y11_38621 PF00639 PPIC-type PPIASE domain Y11_38631 PF03968 OstA-like protein Y11_38631 PF04453 LPS transport system D Y11_38641 PF05099 Tellurite resistance protein TerB Y11_38641 PF00226 DnaJ domain Y11_38651 PF00849 RNA pseudouridylate synthase Y11_38661 PF02369 Bacterial Ig-like domain (group 1) Y11_38661 PF11924 Inverse autotransporter, beta-domain Y11_38661 PF09134 Invasin, domain 3 Y11_38671 PF00271 Helicase conserved C-terminal domain Y11_38671 PF18337 RapA N-terminal Tudor like domain Y11_38671 PF18339 RapA N-terminal Tudor like domain 1 Y11_38671 PF00176 SNF2 family N-terminal domain Y11_38671 PF12137 RNA polymerase recycling family C-terminal Y11_38681 PF03104 DNA polymerase family B, exonuclease domain Y11_38681 PF00136 DNA polymerase family B Y11_38691 PF09335 SNARE associated Golgi protein Y11_38701 PF00005 ABC transporter Y11_38711 PF00528 Binding-protein-dependent transport system inner membrane component Y11_38751 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_38751 PF12793 Sugar transport-related sRNA regulator N-term Y11_38761 PF04055 Radical SAM superfamily Y11_38791 PF07690 Major Facilitator Superfamily Y11_38801 PF03222 Tryptophan/tyrosine permease family Y11_38811 PF01212 Beta-eliminating lyase Y11_38821 PF01212 Beta-eliminating lyase Y11_38831 PF00694 Aconitase C-terminal domain Y11_38841 PF00330 Aconitase family (aconitate hydratase) Y11_38851 PF00180 Isocitrate/isopropylmalate dehydrogenase Y11_38861 PF08502 LeuA allosteric (dimerisation) domain Y11_38861 PF00682 HMGL-like Y11_38881 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_38881 PF03466 LysR substrate binding domain Y11_38891 PF00501 AMP-binding enzyme Y11_38911 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Y11_38911 PF00205 Thiamine pyrophosphate enzyme, central domain Y11_38911 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Y11_38921 PF10369 Small subunit of acetolactate synthase Y11_38931 PF00356 Bacterial regulatory proteins, lacI family Y11_38931 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Y11_38941 PF06610 L-alanine exporter Y11_38961 PF02381 MraZ protein, putative antitoxin-like Y11_38971 PF01795 MraW methylase family Y11_38981 PF04999 Cell division protein FtsL Y11_38991 PF00905 Penicillin binding protein transpeptidase domain Y11_38991 PF03717 Penicillin-binding Protein dimerisation domain Y11_39001 PF01225 Mur ligase family, catalytic domain Y11_39001 PF02875 Mur ligase family, glutamate ligase domain Y11_39001 PF08245 Mur ligase middle domain Y11_39011 PF08245 Mur ligase middle domain Y11_39011 PF02875 Mur ligase family, glutamate ligase domain Y11_39011 PF01225 Mur ligase family, catalytic domain Y11_39021 PF00953 Glycosyl transferase family 4 Y11_39021 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Y11_39031 PF08245 Mur ligase middle domain Y11_39031 PF02875 Mur ligase family, glutamate ligase domain Y11_39041 PF01098 Cell cycle protein Y11_39051 PF03033 Glycosyltransferase family 28 N-terminal domain Y11_39051 PF04101 Glycosyltransferase family 28 C-terminal domain Y11_39061 PF01225 Mur ligase family, catalytic domain Y11_39061 PF08245 Mur ligase middle domain Y11_39061 PF02875 Mur ligase family, glutamate ligase domain Y11_39071 PF07478 D-ala D-ala ligase C-terminus Y11_39071 PF01820 D-ala D-ala ligase N-terminus Y11_39081 PF03799 Cell division protein FtsQ Y11_39081 PF08478 POTRA domain, FtsQ-type Y11_39091 PF02491 SHS2 domain inserted in FTSA Y11_39101 PF00091 Tubulin/FtsZ family, GTPase domain Y11_39101 PF12327 FtsZ family, C-terminal domain Y11_39111 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Y11_39131 PF06558 Secretion monitor precursor protein (SecM) Y11_39141 PF07517 SecA DEAD-like domain Y11_39141 PF07516 SecA Wing and Scaffold domain Y11_39141 PF02810 SEC-C motif Y11_39141 PF01043 SecA preprotein cross-linking domain Y11_39151 PF00293 NUDIX domain Y11_39161 PF03884 DNA gyrase inhibitor YacG Y11_39171 PF07072 Cell division protein Y11_39181 PF01121 Dephospho-CoA kinase Y11_39191 PF00478 IMP dehydrogenase / GMP reductase domain Y11_39201 PF00482 Type II secretion system (T2SS), protein F Y11_39211 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Y11_39211 PF00437 Type II/IV secretion system protein Y11_39221 PF07963 Prokaryotic N-terminal methylation motif Y11_39231 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Y11_39231 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Y11_39241 PF01510 N-acetylmuramoyl-L-alanine amidase Y11_39251 PF17113 Regulatory signalling modulator protein AmpE Y11_39261 PF00324 Amino acid permease Y11_39271 PF00324 Amino acid permease Y11_39291 PF00392 Bacterial regulatory proteins, gntR family Y11_39291 PF07729 FCD domain Y11_39301 PF00456 Transketolase, thiamine diphosphate binding domain Y11_39301 PF17831 Pyruvate dehydrogenase E1 component middle domain Y11_39311 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Y11_39311 PF00364 Biotin-requiring enzyme Y11_39311 PF02817 e3 binding domain Y11_39321 PF07992 Pyridine nucleotide-disulphide oxidoreductase Y11_39321 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Y11_39341 PF01965 DJ-1/PfpI family Y11_39341 PF12833 Helix-turn-helix domain Y11_39351 PF07715 TonB-dependent Receptor Plug Domain Y11_39351 PF00593 TonB dependent receptor Y11_39361 PF11791 Aconitate B N-terminal domain Y11_39361 PF06434 Aconitate hydratase 2 N-terminus Y11_39361 PF00330 Aconitase family (aconitate hydratase) Y11_39371 PF06062 Uncharacterised protein family (UPF0231) Y11_39381 PF00892 EamA-like transporter family Y11_39401 PF18624 CDI immunity protein Y11_39411 PF02675 S-adenosylmethionine decarboxylase Y11_39421 PF17284 Spermidine synthase tetramerisation domain Y11_39431 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) Y11_39441 PF00394 Multicopper oxidase Y11_39441 PF07731 Multicopper oxidase Y11_39441 PF10518 TAT (twin-arginine translocation) pathway signal sequence Y11_39441 PF07732 Multicopper oxidase Y11_39451 PF00156 Phosphoribosyl transferase domain Y11_39461 PF00484 Carbonic anhydrase Y11_39471 PF00005 ABC transporter Y11_39481 PF01061 ABC-2 type transporter Y11_39501 PF01522 Polysaccharide deacetylase Y11_39511 PF02261 Aspartate decarboxylase Y11_39521 PF02569 Pantoate-beta-alanine ligase Y11_39531 PF02548 Ketopantoate hydroxymethyltransferase Y11_39541 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Y11_39551 PF12627 Probable RNA and SrmB- binding site of polymerase A Y11_39551 PF12626 Polymerase A arginine-rich C-terminus Y11_39551 PF01743 Poly A polymerase head domain Y11_39561 PF00749 tRNA synthetases class I (E and Q), catalytic domain Y11_39571 PF01258 Prokaryotic dksA/traR C4-type zinc finger Y11_39581 PF17746 SfsA N-terminal OB domain Y11_39581 PF03749 Sugar fermentation stimulation protein RE domain Y11_39591 PF02834 LigT like Phosphoesterase Y11_39601 PF00270 DEAD/DEAH box helicase Y11_39601 PF00271 Helicase conserved C-terminal domain Y11_39601 PF08482 ATP-dependent helicase C-terminal Y11_39601 PF04408 Helicase associated domain (HA2) Y11_39611 PF14814 Bifunctional transglycosylase second domain Y11_39611 PF00905 Penicillin binding protein transpeptidase domain Y11_39611 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal Y11_39611 PF00912 Transglycosylase Y11_39621 PF00005 ABC transporter Y11_39631 PF01497 Periplasmic binding protein Y11_39641 PF01032 FecCD transport family Y11_39651 PF07690 Major Facilitator Superfamily Y11_39661 PF00202 Aminotransferase class-III Y11_39681 PF00654 Voltage gated chloride channel Y11_39691 PF01521 Iron-sulphur cluster biosynthesis Y11_39711 PF03458 UPF0126 domain Y11_39721 PF01497 Periplasmic binding protein Y11_39731 PF01048 Phosphorylase superfamily Y11_39741 PF13286 Phosphohydrolase-associated domain Y11_39741 PF01966 HD domain Y11_39751 PF00595 PDZ domain Y11_39761 PF00672 HAMP domain Y11_39761 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_39761 PF00512 His Kinase A (phospho-acceptor) domain Y11_39761 PF01627 Hpt domain Y11_39761 PF00072 Response regulator receiver domain Y11_39761 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y11_39771 PF00672 HAMP domain Y11_39771 PF00512 His Kinase A (phospho-acceptor) domain Y11_39771 PF01627 Hpt domain Y11_39771 PF00072 Response regulator receiver domain Y11_39771 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Y11_39771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_39781 PF01938 TRAM domain Y11_39781 PF05958 tRNA (Uracil-5-)-methyltransferase Y11_39791 PF02824 TGS domain Y11_39791 PF13291 ACT domain Y11_39791 PF04607 Region found in RelA / SpoT proteins Y11_39801 PF03819 MazG nucleotide pyrophosphohydrolase domain Y11_39811 PF00117 Glutamine amidotransferase class-I Y11_39811 PF06418 CTP synthase N-terminus Y11_39821 PF03952 Enolase, N-terminal domain Y11_39821 PF00113 Enolase, C-terminal TIM barrel domain Y11_39831 PF01812 5-formyltetrahydrofolate cyclo-ligase family Y11_39841 PF05164 Cell division protein ZapA Y11_39851 PF03695 Uncharacterised protein family (UPF0149) Y11_39861 PF00557 Metallopeptidase family M24 Y11_39861 PF05195 Aminopeptidase P, N-terminal domain Y11_39871 PF01494 FAD binding domain Y11_39881 PF01494 FAD binding domain Y11_39901 PF01571 Aminomethyltransferase folate-binding domain Y11_39901 PF08669 Glycine cleavage T-protein C-terminal barrel domain Y11_39911 PF01597 Glycine cleavage H-protein Y11_39921 PF02347 Glycine cleavage system P-protein Y11_39961 PF03006 Haemolysin-III related Y11_39971 PF02371 Transposase IS116/IS110/IS902 family Y11_39971 PF01548 Transposase Y11_39991 PF01571 Aminomethyltransferase folate-binding domain Y11_40001 PF03937 Flavinator of succinate dehydrogenase Y11_40011 PF07254 Membrane-bound toxin component of toxin-antitoxin system Y11_40021 PF00072 Response regulator receiver domain Y11_40021 PF00486 Transcriptional regulatory protein, C terminal Y11_40031 PF00512 His Kinase A (phospho-acceptor) domain Y11_40031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_40031 PF00672 HAMP domain Y11_40041 PF00512 His Kinase A (phospho-acceptor) domain Y11_40041 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_40041 PF00672 HAMP domain Y11_40051 PF06123 Inner membrane protein CreD Y11_40061 PF00258 Flavodoxin Y11_40071 PF00589 Phage integrase family Y11_40071 PF02899 Phage integrase, N-terminal SAM-like domain Y11_40081 PF13098 Thioredoxin-like domain Y11_40081 PF10411 Disulfide bond isomerase protein N-terminus Y11_40091 PF02272 DHHA1 domain Y11_40091 PF17768 RecJ OB domain Y11_40091 PF01368 DHH family Y11_40101 PF03462 PCRF domain Y11_40101 PF00472 RF-1 domain Y11_40111 PF01336 OB-fold nucleic acid binding domain Y11_40111 PF00152 tRNA synthetases class II (D, K and N) Y11_40151 PF15723 Motility quorum-sensing regulator, toxin of MqsA Y11_40161 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA Y11_40171 PF00872 Transposase, Mutator family Y11_40211 PF13474 SnoaL-like domain Y11_40221 PF08448 PAS fold Y11_40221 PF00990 Diguanylate cyclase, GGDEF domain Y11_40231 PF01548 Transposase Y11_40231 PF02371 Transposase IS116/IS110/IS902 family Y11_40251 PF00226 DnaJ domain Y11_40251 PF01556 DnaJ C terminal domain Y11_40281 PF01638 HxlR-like helix-turn-helix Y11_40291 PF00484 Carbonic anhydrase Y11_40321 PF03958 Bacterial type II/III secretion system short domain Y11_40321 PF00263 Bacterial type II and III secretion system protein Y11_40331 PF03958 Bacterial type II/III secretion system short domain Y11_40331 PF00263 Bacterial type II and III secretion system protein Y11_40351 PF00482 Type II secretion system (T2SS), protein F Y11_40361 PF00482 Type II secretion system (T2SS), protein F Y11_40371 PF08334 Type II secretion system (T2SS), protein G Y11_40371 PF07963 Prokaryotic N-terminal methylation motif Y11_40451 PF06750 Bacterial Peptidase A24 N-terminal domain Y11_40451 PF01478 Type IV leader peptidase family Y11_40501 PF00672 HAMP domain Y11_40501 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Y11_40501 PF02203 Tar ligand binding domain homologue Y11_40531 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_40531 PF03466 LysR substrate binding domain Y11_40541 PF07690 Major Facilitator Superfamily Y11_40551 PF03466 LysR substrate binding domain Y11_40551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_40561 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Y11_40561 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Y11_40571 PF00356 Bacterial regulatory proteins, lacI family Y11_40581 PF01568 Molydopterin dinucleotide binding domain Y11_40581 PF00384 Molybdopterin oxidoreductase Y11_40591 PF01548 Transposase Y11_40591 PF02371 Transposase IS116/IS110/IS902 family Y11_40601 PF00501 AMP-binding enzyme Y11_40601 PF01553 Acyltransferase Y11_40601 PF13193 AMP-binding enzyme C-terminal domain Y11_40611 PF07690 Major Facilitator Superfamily Y11_40621 PF00248 Aldo/keto reductase family Y11_40631 PF03741 Integral membrane protein TerC family Y11_40641 PF02976 DNA mismatch repair enzyme MutH Y11_40661 PF00293 NUDIX domain Y11_40671 PF02896 PEP-utilising enzyme, TIM barrel domain Y11_40671 PF00391 PEP-utilising enzyme, mobile domain Y11_40671 PF05524 PEP-utilising enzyme, N-terminal Y11_40671 PF01590 GAF domain Y11_40681 PF01790 Prolipoprotein diacylglyceryl transferase Y11_40691 PF00303 Thymidylate synthase Y11_40731 PF07963 Prokaryotic N-terminal methylation motif Y11_40731 PF12528 Type II secretion prepilin peptidase dependent protein C Y11_40741 PF17946 RecC C-terminal domain Y11_40751 PF05193 Peptidase M16 inactive domain Y11_40751 PF00675 Insulinase (Peptidase family M16) Y11_40751 PF16187 Middle or third domain of peptidase_M16 Y11_40761 PF13361 UvrD-like helicase C-terminal domain Y11_40761 PF00580 UvrD/REP helicase N-terminal domain Y11_40761 PF12705 PD-(D/E)XK nuclease superfamily Y11_40771 PF13538 UvrD-like helicase C-terminal domain Y11_40781 PF01548 Transposase Y11_40781 PF02371 Transposase IS116/IS110/IS902 family Y11_40791 PF00696 Amino acid kinase family Y11_40791 PF00583 Acetyltransferase (GNAT) family Y11_40801 PF11741 AMIN domain Y11_40801 PF01520 N-acetylmuramoyl-L-alanine amidase Y11_40811 PF03562 MltA specific insert domain Y11_40811 PF06725 3D domain Y11_40821 PF00899 ThiF family Y11_40831 PF02657 Fe-S metabolism associated domain Y11_40841 PF00266 Aminotransferase class-V Y11_40851 PF06004 Bacterial protein of unknown function (DUF903) Y11_40861 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_40861 PF03466 LysR substrate binding domain Y11_40871 PF04241 Protein of unknown function (DUF423) Y11_40881 PF18125 RlmM ferredoxin-like domain Y11_40881 PF01728 FtsJ-like methyltransferase Y11_40891 PF01548 Transposase Y11_40891 PF02371 Transposase IS116/IS110/IS902 family Y11_40901 PF00872 Transposase, Mutator family Y11_40911 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Y11_40911 PF01367 5'-3' exonuclease, C-terminal SAM fold Y11_40921 PF11892 Domain of unknown function (DUF3412) Y11_40921 PF03641 Possible lysine decarboxylase Y11_40921 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Y11_40931 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Y11_40931 PF14489 QueF-like protein Y11_40941 PF07348 Syd protein (SUKH-2) Y11_40951 PF04287 tRNA pseudouridine synthase C Y11_40961 PF00849 RNA pseudouridylate synthase Y11_40971 PF00258 Flavodoxin Y11_40981 PF11944 Protein of unknown function (DUF3461) Y11_40991 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_40991 PF14602 Hexapeptide repeat of succinyl-transferase Y11_40991 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Y11_41001 PF01842 ACT domain Y11_41001 PF01909 Nucleotidyltransferase domain Y11_41001 PF08335 GlnD PII-uridylyltransferase Y11_41001 PF01966 HD domain Y11_41011 PF00557 Metallopeptidase family M24 Y11_41021 PF00318 Ribosomal protein S2 Y11_41031 PF00889 Elongation factor TS Y11_41041 PF00696 Amino acid kinase family Y11_41051 PF01765 Ribosome recycling factor Y11_41061 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Y11_41061 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Y11_41061 PF13288 DXP reductoisomerase C-terminal domain Y11_41071 PF01255 Putative undecaprenyl diphosphate synthase Y11_41091 PF17820 PDZ domain Y11_41091 PF02163 Peptidase family M50 Y11_41101 PF01103 Surface antigen Y11_41101 PF07244 Surface antigen variable number repeat Y11_41111 PF03938 Outer membrane protein (OmpH-like) Y11_41121 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Y11_41121 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_41131 PF07977 FabA-like domain Y11_41141 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Y11_41141 PF00132 Bacterial transferase hexapeptide (six repeats) Y11_41151 PF02684 Lipid-A-disaccharide synthetase Y11_41161 PF01351 Ribonuclease HII Y11_41171 PF02811 PHP domain Y11_41171 PF01336 OB-fold nucleic acid binding domain Y11_41171 PF14579 Helix-hairpin-helix motif Y11_41171 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Y11_41171 PF07733 Bacterial DNA polymerase III alpha NTPase domain Y11_41181 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Y11_41201 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Y11_41211 PF09179 TilS substrate binding domain Y11_41211 PF11734 TilS substrate C-terminal domain Y11_41211 PF01171 PP-loop family Y11_41221 PF00034 Cytochrome c Y11_41231 PF07073 Modulator of Rho-dependent transcription termination (ROF) Y11_41241 PF06786 Uncharacterised protein family (UPF0253) Y11_41251 PF07152 YaeQ protein Y11_41261 PF00472 RF-1 domain Y11_41271 PF04170 NlpE N-terminal domain Y11_41271 PF17185 NlpE C-terminal OB domain Y11_41281 PF04073 Aminoacyl-tRNA editing domain Y11_41281 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Y11_41281 PF03129 Anticodon binding domain Y11_41301 PF18389 TrmO C-terminal domain Y11_41301 PF01980 tRNA-methyltransferase O Y11_41311 PF16358 RcsF lipoprotein Y11_41321 PF03180 NLPA lipoprotein Y11_41331 PF00528 Binding-protein-dependent transport system inner membrane component Y11_41341 PF00005 ABC transporter Y11_41341 PF09383 NIL domain Y11_41361 PF00872 Transposase, Mutator family Y11_41371 PF00109 Beta-ketoacyl synthase, N-terminal domain Y11_41371 PF02801 Beta-ketoacyl synthase, C-terminal domain Y11_41381 PF00248 Aldo/keto reductase family Y11_41391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Y11_41391 PF03466 LysR substrate binding domain Y11_41411 PF07690 Major Facilitator Superfamily Y11_41431 PF03372 Endonuclease/Exonuclease/phosphatase family Y11_41441 PF01548 Transposase Y11_41441 PF02371 Transposase IS116/IS110/IS902 family Y11_41451 PF02371 Transposase IS116/IS110/IS902 family Y11_41451 PF01548 Transposase Y11_41461 PF01464 Transglycosylase SLT domain Y11_41461 PF01476 LysM domain Y11_41471 PF00753 Metallo-beta-lactamase superfamily Y11_41471 PF16123 Hydroxyacylglutathione hydrolase C-terminus Y11_41481 PF08241 Methyltransferase domain Y11_41491 PF00075 RNase H Y11_41501 PF00929 Exonuclease Y11_41511 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Y11_41521 PF00528 Binding-protein-dependent transport system inner membrane component Y11_41531 PF00571 CBS domain Y11_41531 PF00005 ABC transporter Y11_41541 PF00268 Ribonucleotide reductase, small chain Y11_41551 PF02867 Ribonucleotide reductase, barrel domain Y11_41551 PF08343 Ribonucleotide reductase N-terminal Y11_41551 PF00317 Ribonucleotide reductase, all-alpha domain Y11_41561 PF07972 NrdI Flavodoxin like Y11_41591 PF02627 Carboxymuconolactone decarboxylase family Y11_41601 PF00392 Bacterial regulatory proteins, gntR family Y11_41601 PF00155 Aminotransferase class I and II Y11_41611 PF05957 Bacterial protein of unknown function (DUF883) Y11_41621 PF06392 Acid shock protein repeat Y11_41641 PF12833 Helix-turn-helix domain Y11_41651 PF07690 Major Facilitator Superfamily Y11_41661 PF09400 Protein of unknown function (DUF2002) Y11_41691 PF00313 'Cold-shock' DNA-binding domain Y11_41751 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Y11_41761 PF00528 Binding-protein-dependent transport system inner membrane component Y11_41771 PF00528 Binding-protein-dependent transport system inner membrane component Y11_41771 PF12911 N-terminal TM domain of oligopeptide transport permease C Y11_41781 PF00005 ABC transporter Y11_41791 PF00005 ABC transporter Y11_41821 PF00547 Urease, gamma subunit Y11_41831 PF00699 Urease beta subunit Y11_41841 PF00449 Urease alpha-subunit, N-terminal domain Y11_41841 PF01979 Amidohydrolase family Y11_41851 PF05194 UreE urease accessory protein, C-terminal domain Y11_41851 PF02814 UreE urease accessory protein, N-terminal domain Y11_41861 PF01730 UreF Y11_41871 PF02492 CobW/HypB/UreG, nucleotide-binding domain Y11_41881 PF01774 UreD urease accessory protein Y11_41891 PF03253 Urea transporter Y11_41901 PF03824 High-affinity nickel-transport protein Y11_41911 PF06411 HdeA/HdeB family Y11_41941 PF02254 TrkA-N domain Y11_41941 PF07885 Ion channel Y11_41951 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_41961 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Y11_41971 PF00248 Aldo/keto reductase family Y11_41981 PF02371 Transposase IS116/IS110/IS902 family Y11_41981 PF01548 Transposase Y11_41991 PF01548 Transposase Y11_41991 PF02371 Transposase IS116/IS110/IS902 family Y11_42001 PF07995 Glucose / Sorbosone dehydrogenase Y11_42011 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Y11_42021 PF02378 Phosphotransferase system, EIIC Y11_42031 PF00232 Glycosyl hydrolase family 1 Y11_42041 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Y11_42051 PF07883 Cupin domain Y11_42051 PF12833 Helix-turn-helix domain Y11_42061 PF04794 YdjC-like protein Y11_42071 PF01740 STAS domain Y11_42071 PF00916 Sulfate permease family Y11_42081 PF00872 Transposase, Mutator family Y11_42091 PF13356 Arm DNA-binding domain Y11_42091 PF00589 Phage integrase family Y11_42101 PF01668 SmpB protein Y11_42111 PF03364 Polyketide cyclase / dehydrase and lipid transport Y11_42121 PF03658 RnfH family Ubiquitin Y11_42131 PF04355 SmpA / OmlA family Y11_42141 PF02463 RecF/RecN/SMC N terminal domain Y11_42151 PF01513 ATP-NAD kinase Y11_42171 PF01025 GrpE Y11_42181 PF03167 Uracil DNA glycosylase superfamily Y11_42191 PF01228 Glycine radical Y11_42221 PF12796 Ankyrin repeats (3 copies) Y11_42241 PF02371 Transposase IS116/IS110/IS902 family Y11_42241 PF01548 Transposase Y11_42251 PF01548 Transposase Y11_42251 PF02371 Transposase IS116/IS110/IS902 family Y11_42261 PF00271 Helicase conserved C-terminal domain Y11_42261 PF00270 DEAD/DEAH box helicase Y11_42271 PF05175 Methyltransferase small domain Y11_42281 PF02910 Fumarate reductase flavoprotein C-term Y11_42281 PF00890 FAD binding domain Y11_42291 PF04542 Sigma-70 region 2 Y11_42291 PF08281 Sigma-70, region 4 Y11_42301 PF03873 Anti sigma-E protein RseA, C-terminal domain Y11_42301 PF03872 Anti sigma-E protein RseA, N-terminal domain Y11_42311 PF17188 MucB/RseB C-terminal domain Y11_42311 PF03888 MucB/RseB N-terminal domain Y11_42341 PF06421 GTP-binding protein LepA C-terminus Y11_42341 PF03144 Elongation factor Tu domain 2 Y11_42341 PF00009 Elongation factor Tu GTP binding domain Y11_42341 PF00679 Elongation factor G C-terminus Y11_42351 PF10502 Signal peptidase, peptidase S26 Y11_42361 PF00035 Double-stranded RNA binding motif Y11_42361 PF14622 Ribonuclease-III-like Y11_42371 PF07650 KH domain Y11_42371 PF01926 50S ribosome-binding GTPase Y11_42381 PF11967 Recombination protein O N terminal Y11_42381 PF02565 Recombination protein O C terminal Y11_42391 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Y11_42401 PF01648 4'-phosphopantetheinyl transferase superfamily Y11_42411 PF02447 GntP family permease Y11_42421 PF01380 SIS domain Y11_42421 PF01418 Helix-turn-helix domain, rpiR family Y11_42431 PF01380 SIS domain Y11_42461 PF14437 MafB19-like deaminase Y11_42471 PF01464 Transglycosylase SLT domain Y11_42471 PF00497 Bacterial extracellular solute-binding proteins, family 3 Y11_42491 PF02769 AIR synthase related protein, C-terminal domain Y11_42491 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Y11_42491 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Y11_42511 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_42511 PF00512 His Kinase A (phospho-acceptor) domain Y11_42521 PF13942 YfhG lipoprotein Y11_42531 PF00158 Sigma-54 interaction domain Y11_42531 PF00072 Response regulator receiver domain Y11_42541 PF02540 NAD synthase Y11_42541 PF00795 Carbon-nitrogen hydrolase Y11_42551 PF00543 Nitrogen regulatory protein P-II Y11_42561 PF10797 Protein of unknown function Y11_42571 PF10941 Protein of unknown function DUF2620 Y11_42581 PF02126 Phosphotriesterase family Y11_42591 PF01168 Alanine racemase, N-terminal domain Y11_42611 PF14502 Helix-turn-helix domain Y11_42611 PF14503 YhfZ C-terminal domain Y11_42621 PF00970 Oxidoreductase FAD-binding domain Y11_42621 PF00042 Globin Y11_42621 PF00175 Oxidoreductase NAD-binding domain Y11_42631 PF00464 Serine hydroxymethyltransferase Y11_42641 PF12832 MFS_1 like family Y11_42651 PF00874 PRD domain Y11_42661 PF06226 Protein of unknown function (DUF1007) Y11_42671 PF03824 High-affinity nickel-transport protein Y11_42681 PF00459 Inositol monophosphatase family Y11_42691 PF00588 SpoU rRNA Methylase family Y11_42701 PF02082 Transcriptional regulator Y11_42711 PF00266 Aminotransferase class-V Y11_42721 PF01592 NifU-like N terminal domain Y11_42731 PF01521 Iron-sulphur cluster biosynthesis Y11_42741 PF00226 DnaJ domain Y11_42741 PF07743 HSCB C-terminal oligomerisation domain Y11_42751 PF00012 Hsp70 protein Y11_42761 PF00111 2Fe-2S iron-sulfur cluster binding domain Y11_42771 PF04384 Iron-sulphur cluster assembly Y11_42781 PF00883 Cytosol aminopeptidase family, catalytic domain Y11_42781 PF12404 Peptidase Y11_42791 PF14581 SseB protein C-terminal domain Y11_42791 PF07179 SseB protein N-terminal domain Y11_42801 PF16168 Adhesin of bacterial autotransporter system, probable stalk Y11_42801 PF03797 Autotransporter beta-domain Y11_42801 PF03212 Pertactin Y11_42841 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Y11_42841 PF07678 A-macroglobulin TED domain Y11_42841 PF01835 MG2 domain Y11_42841 PF17962 Bacterial macroglobulin domain 6 Y11_42841 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Y11_42841 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Y11_42841 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Y11_42841 PF07703 Alpha-2-macroglobulin bait region domain Y11_42841 PF00207 Alpha-2-macroglobulin family Y11_42851 PF00905 Penicillin binding protein transpeptidase domain Y11_42851 PF00912 Transglycosylase Y11_42851 PF06832 Penicillin-Binding Protein C-terminus Family Y11_42871 PF00334 Nucleoside diphosphate kinase Y11_42881 PF04055 Radical SAM superfamily Y11_42901 PF13464 Domain of unknown function (DUF4115) Y11_42911 PF04551 GcpE protein Y11_42931 PF13393 Histidyl-tRNA synthetase Y11_42931 PF03129 Anticodon binding domain Y11_42941 PF09976 Tetratricopeptide repeat-like domain Y11_42951 PF13360 PQQ-like domain Y11_42971 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Y11_42971 PF01926 50S ribosome-binding GTPase Y11_43001 PF07191 zinc-ribbons Y11_43011 PF02601 Exonuclease VII, large subunit Y11_43011 PF13742 OB-fold nucleic acid binding domain Y11_43021 PF00571 CBS domain Y11_43021 PF00478 IMP dehydrogenase / GMP reductase domain Y11_43041 PF02540 NAD synthase Y11_43041 PF00958 GMP synthase C terminal domain Y11_43041 PF00117 Glutamine amidotransferase class-I Y11_43071 PF00732 GMC oxidoreductase Y11_43071 PF05199 GMC oxidoreductase Y11_43081 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Y11_43081 PF00034 Cytochrome c Y11_43141 PF08543 Phosphomethylpyrimidine kinase Y11_43171 PF01380 SIS domain Y11_43171 PF00571 CBS domain Y11_43181 PF00455 DeoR C terminal sensor domain Y11_43181 PF08220 DeoR-like helix-turn-helix domain Y11_43191 PF06923 Glucitol operon activator protein (GutM) Y11_43201 PF00106 short chain dehydrogenase Y11_43211 PF03829 PTS system glucitol/sorbitol-specific IIA component Y11_43221 PF07663 Sorbitol phosphotransferase enzyme II C-terminus Y11_43221 PF03612 Sorbitol phosphotransferase enzyme II N-terminus Y11_43231 PF03608 PTS system enzyme II sorbitol-specific factor Y11_43241 PF00781 Diacylglycerol kinase catalytic domain Y11_43261 PF07411 Domain of unknown function (DUF1508) Y11_43271 PF00072 Response regulator receiver domain Y11_43271 PF00486 Transcriptional regulatory protein, C terminal Y11_43281 PF00512 His Kinase A (phospho-acceptor) domain Y11_43281 PF00672 HAMP domain Y11_43281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Y11_43291 PF07690 Major Facilitator Superfamily Y11_43311 PF00873 AcrB/AcrD/AcrF family Y11_43321 PF00873 AcrB/AcrD/AcrF family Y11_43331 PF13533 Biotin-lipoyl like Y11_43341 PF00012 Hsp70 protein Y11_43351 PF08448 PAS fold Y11_43351 PF08447 PAS fold Y11_43351 PF00563 EAL domain Y11_43351 PF00990 Diguanylate cyclase, GGDEF domain Y11_43351 PF05231 MASE1 Y11_43351 PF13426 PAS domain Y11_43361 PF00005 ABC transporter Y11_43371 PF00528 Binding-protein-dependent transport system inner membrane component Y11_43381 PF00528 Binding-protein-dependent transport system inner membrane component Y11_43391 PF13089 Polyphosphate kinase N-terminal domain Y11_43391 PF02503 Polyphosphate kinase middle domain Y11_43391 PF13090 Polyphosphate kinase C-terminal domain 2 Y11_43391 PF17941 Polyphosphate kinase C-terminal domain 1 Y11_43401 PF02541 Ppx/GppA phosphatase family Y11_43421 PF03448 MgtE intracellular N domain Y11_43421 PF01769 Divalent cation transporter Y11_43421 PF00571 CBS domain Y11_43431 PF08447 PAS fold Y11_43431 PF13426 PAS domain Y11_43431 PF00563 EAL domain Y11_43431 PF05231 MASE1 Y11_43431 PF00990 Diguanylate cyclase, GGDEF domain Y11_43431 PF08448 PAS fold Y11_43441 PF13302 Acetyltransferase (GNAT) domain Y11_43451 PF00551 Formyl transferase Y11_43461 PF00586 AIR synthase related protein, N-terminal domain Y11_43461 PF02769 AIR synthase related protein, C-terminal domain Y11_43481 PF00860 Permease family Y11_p0001 PF01695 IstB-like ATP binding protein Y11_p0011 PF00665 Integrase core domain Y11_p0031 PF09632 Rac1-binding domain Y11_p0031 PF00069 Protein kinase domain Y11_p0061 PF05818 Enterobacterial TraT complement resistance protein Y11_p0091 PF03543 Yersinia/Haemophilus virulence surface antigen Y11_p0101 PF05932 Tir chaperone protein (CesT) family Y11_p0131 PF01527 Transposase Y11_p0141 PF01527 Transposase Y11_p0171 PF09013 YopH, N-terminal Y11_p0181 PF01526 Tn3 transposase DDE domain Y11_p0181 PF13700 Domain of unknown function (DUF4158) Y11_p0191 PF13700 Domain of unknown function (DUF4158) Y11_p0191 PF01526 Tn3 transposase DDE domain Y11_p0221 PF05658 Head domain of trimeric autotransporter adhesin Y11_p0221 PF03895 YadA-like membrane anchor domain Y11_p0221 PF05662 Coiled stalk of trimeric autotransporter adhesin Y11_p0231 PF00892 EamA-like transporter family Y11_p0251 PF01526 Tn3 transposase DDE domain Y11_p0251 PF13700 Domain of unknown function (DUF4158) Y11_p0251 PF01526 Tn3 transposase DDE domain Y11_p0251 PF13700 Domain of unknown function (DUF4158) Y11_p0261 PF00239 Resolvase, N terminal domain Y11_p0261 PF02796 Helix-turn-helix domain of resolvase Y11_p0271 PF03960 ArsC family Y11_p0281 PF02040 Arsenical pump membrane protein Y11_p0291 PF01022 Bacterial regulatory protein, arsR family Y11_p0301 PF03358 NADPH-dependent FMN reductase Y11_p0351 PF01527 Transposase Y11_p0361 PF01527 Transposase Y11_p0411 PF13614 AAA domain Y11_p0421 PF02195 ParB-like nuclease domain Y11_p0421 PF18090 Centromere-binding protein HTH domain Y11_p0451 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Y11_p0471 PF09020 YopE, N terminal Y11_p0471 PF03545 Yersinia virulence determinant (YopE) Y11_p0481 PF05932 Tir chaperone protein (CesT) family Y11_p0491 PF01527 Transposase Y11_p0521 PF00665 Integrase core domain Y11_p0541 PF09013 YopH, N-terminal Y11_p0541 PF00102 Protein-tyrosine phosphatase Y11_p0551 PF09013 YopH, N-terminal Y11_p0561 PF02108 Flagellar assembly protein FliH Y11_p0571 PF06578 YOP proteins translocation protein K (YscK) Y11_p0581 PF01514 Secretory protein of YscJ/FliF family Y11_p0591 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI Y11_p0601 PF09025 YopR, type III needle-polymerisation regulator Y11_p0611 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) Y11_p0621 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF Y11_p0631 PF08988 Type III secretion system, cytoplasmic E component of needle Y11_p0641 PF16693 Inner membrane component of T3SS, periplasmic domain Y11_p0641 PF16697 Inner membrane component of T3SS, cytoplasmic domain Y11_p0671 PF05932 Tir chaperone protein (CesT) family Y11_p0691 PF12833 Helix-turn-helix domain Y11_p0711 PF01312 FlhB HrpN YscU SpaS Family Y11_p0721 PF01311 Bacterial export proteins, family 1 Y11_p0731 PF01313 Bacterial export proteins, family 3 Y11_p0741 PF00813 FliP family Y11_p0751 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Y11_p0761 PF02120 Flagellar hook-length control protein FliK Y11_p0771 PF07321 Type III secretion protein YscO Y11_p0781 PF02874 ATP synthase alpha/beta family, beta-barrel domain Y11_p0781 PF18269 T3SS EscN ATPase C-terminal domain Y11_p0781 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Y11_p0791 PF07201 HrpJ-like domain Y11_p0801 PF09059 TyeA Y11_p0821 PF09474 Type III secretion system YscX (type_III_YscX) Y11_p0841 PF00771 FHIPEP family Y11_p0851 PF09621 Type III secretion system regulator (LcrR) Y11_p0861 PF07216 LcrG protein Y11_p0871 PF04792 V antigen (LcrV) protein Y11_p0881 PF07720 Tetratricopeptide repeat Y11_p0891 PF04888 Secretion system effector C (SseC) like family Y11_p0901 PF05844 YopD protein Y11_p0911 PF00872 Transposase, Mutator family Y11_p0931 PF12468 Type III secretion system leucine rich repeat protein Y11_p0931 PF12468 Type III secretion system leucine rich repeat protein Y11_p1001 PF01527 Transposase Y11_p1011 PF01527 Transposase Y11_p1051 PF13333 Integrase core domain Y11_p1051 PF00665 Integrase core domain Y11_p1051 PF13276 HTH-like domain Y11_p1081 PF10723 Replication regulatory protein RepB Y11_p1091 PF02387 IncFII RepA protein family