Y11_00071 SM01130 Y11_00071 Y11_00341 SM00421 helix_turn_helix, Lux Regulon Y11_00341 SM00448 cheY-homologous receiver domain Y11_00371 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_00411 SM00919 Malic enzyme, NAD binding domain Y11_00411 SM01274 Y11_00411 Y11_00531 SM01130 Y11_00531 Y11_00641 SM00382 ATPases associated with a variety of cellular activities Y11_00671 SM00382 ATPases associated with a variety of cellular activities Y11_00701 SM00862 Transcriptional regulatory protein, C terminal Y11_00711 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_00711 SM00387 Histidine kinase-like ATPases Y11_00711 SM00388 His Kinase A (phosphoacceptor) domain Y11_00771 SM00771 ZipA, C-terminal domain (FtsZ-binding) Y11_00781 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_00781 SM00292 breast cancer carboxy-terminal domain Y11_00781 SM00532 Ligase N family Y11_00951 SM00448 cheY-homologous receiver domain Y11_00951 SM00850 LytTr DNA-binding domain Y11_00961 SM00387 Histidine kinase-like ATPases Y11_01051 SM00382 ATPases associated with a variety of cellular activities Y11_01141 SM00382 ATPases associated with a variety of cellular activities Y11_01211 SM00867 YceI-like domain Y11_01221 SM00354 helix_turn _helix lactose operon repressor Y11_01301 SM00382 ATPases associated with a variety of cellular activities Y11_01461 SM00463 Small MutS-related domain Y11_01541 SM00825 Beta-ketoacyl synthase Y11_01551 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_01551 SM00091 PAS domain Y11_01551 SM00267 diguanylate cyclase Y11_01631 SM00354 helix_turn _helix lactose operon repressor Y11_01721 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_01751 SM00342 helix_turn_helix, arabinose operon control protein Y11_01771 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_01871 SM00062 Bacterial periplasmic substrate-binding proteins Y11_01901 SM00382 ATPases associated with a variety of cellular activities Y11_01941 SM00052 Putative diguanylate phosphodiesterase Y11_02021 SM00354 helix_turn _helix lactose operon repressor Y11_02121 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_02191 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Y11_02201 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_02201 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Y11_02351 SM00354 helix_turn _helix lactose operon repressor Y11_02471 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y11_02501 SM01060 Y11_02501 Y11_02531 SM00852 Probable molybdopterin binding domain Y11_02641 SM00434 DNA Topoisomerase IV Y11_02651 SM00387 Histidine kinase-like ATPases Y11_02651 SM00388 His Kinase A (phosphoacceptor) domain Y11_02651 SM00448 cheY-homologous receiver domain Y11_02661 SM00421 helix_turn_helix, Lux Regulon Y11_02661 SM00448 cheY-homologous receiver domain Y11_02671 SM00387 Histidine kinase-like ATPases Y11_02671 SM00388 His Kinase A (phosphoacceptor) domain Y11_02801 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_02801 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_02831 SM00530 Helix-turn-helix XRE-family like proteins Y11_02911 SM01057 Eukaryotic-type carbonic anhydrase Y11_02991 SM00487 DEAD-like helicases superfamily Y11_02991 SM00490 helicase superfamily c-terminal domain Y11_03001 SM00363 S4 RNA-binding domain Y11_03031 SM00382 ATPases associated with a variety of cellular activities Y11_03071 SM00052 Putative diguanylate phosphodiesterase Y11_03091 SM00014 Acid phosphatase homologues Y11_03101 SM00833 Cobalamin synthesis protein cobW C-terminal domain Y11_03121 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_03121 SM00895 Y11_03121 Y11_03161 SM00841 Elongation factor P, C-terminal Y11_03161 SM01185 Y11_03161 Y11_03281 SM00862 Transcriptional regulatory protein, C terminal Y11_03341 SM00518 AP endonuclease family 2 Y11_03411 SM00382 ATPases associated with a variety of cellular activities Y11_03481 SM00382 ATPases associated with a variety of cellular activities Y11_03481 SM00930 Y11_03481 Y11_03511 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_03521 SM00936 Penicillin-binding protein 5, C-terminal domain Y11_03561 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_03561 SM01134 Y11_03561 Y11_03571 SM01133 Y11_03571 Y11_03581 SM00014 Acid phosphatase homologues Y11_03661 SM00382 ATPases associated with a variety of cellular activities Y11_03721 SM00062 Bacterial periplasmic substrate-binding proteins Y11_03721 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_03761 SM00062 Bacterial periplasmic substrate-binding proteins Y11_03761 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_03771 SM00382 ATPases associated with a variety of cellular activities Y11_03901 SM00382 ATPases associated with a variety of cellular activities Y11_03911 SM00357 Cold shock protein domain Y11_03931 SM00382 ATPases associated with a variety of cellular activities Y11_03931 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_03941 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_03961 SM00382 ATPases associated with a variety of cellular activities Y11_03971 SM00382 ATPases associated with a variety of cellular activities Y11_03991 SM00344 helix_turn_helix ASNC type Y11_04001 SM00843 Y11_04001 Y11_04021 SM00382 ATPases associated with a variety of cellular activities Y11_04161 SM00870 Y11_04161 Y11_04211 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_04221 SM00411 bacterial (prokaryotic) histone like domain Y11_04231 SM00849 Metallo-beta-lactamase superfamily Y11_04241 SM00382 ATPases associated with a variety of cellular activities Y11_04261 SM01150 Y11_04261 Y11_04271 SM00357 Cold shock protein domain Y11_04291 SM00357 Cold shock protein domain Y11_04411 SM00849 Metallo-beta-lactamase superfamily Y11_04421 SM00052 Putative diguanylate phosphodiesterase Y11_04521 SM00981 Y11_04521 Y11_04531 SM00382 ATPases associated with a variety of cellular activities Y11_04581 SM00825 Beta-ketoacyl synthase Y11_04701 SM00851 MGS-like domain Y11_04721 SM00881 CoA binding domain Y11_04731 SM00992 Hemimethylated DNA-binding protein YccV like Y11_04741 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y11_04881 SM00421 helix_turn_helix, Lux Regulon Y11_04921 SM01091 Transporter associated domain Y11_05051 SM00421 helix_turn_helix, Lux Regulon Y11_05051 SM00448 cheY-homologous receiver domain Y11_05061 SM00387 Histidine kinase-like ATPases Y11_05091 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_05111 SM00450 Rhodanese Homology Domain Y11_05141 SM00421 helix_turn_helix, Lux Regulon Y11_05201 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_05211 SM00363 S4 RNA-binding domain Y11_05271 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Y11_05281 SM00822 Y11_05281 Y11_05301 SM00825 Beta-ketoacyl synthase Y11_05381 SM00382 ATPases associated with a variety of cellular activities Y11_05521 SM00487 DEAD-like helicases superfamily Y11_05521 SM00490 helicase superfamily c-terminal domain Y11_05521 SM00982 Y11_05521 Y11_05521 SM01058 CarD-like/TRCF domain Y11_05541 SM00382 ATPases associated with a variety of cellular activities Y11_05591 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y11_05601 SM00387 Histidine kinase-like ATPases Y11_05601 SM00388 His Kinase A (phosphoacceptor) domain Y11_05611 SM00448 cheY-homologous receiver domain Y11_05611 SM00862 Transcriptional regulatory protein, C terminal Y11_05681 SM01329 Y11_05681 Y11_05801 SM00640 Glycosyl hydrolases family 32 Y11_05811 SM00354 helix_turn _helix lactose operon repressor Y11_05831 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_05831 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_05961 SM00342 helix_turn_helix, arabinose operon control protein Y11_06001 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_06001 SM00091 PAS domain Y11_06001 SM00267 diguanylate cyclase Y11_06021 SM00090 RIO-like kinase Y11_06031 SM00382 ATPases associated with a variety of cellular activities Y11_06081 SM00342 helix_turn_helix, arabinose operon control protein Y11_06241 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_06241 SM00091 PAS domain Y11_06241 SM00267 diguanylate cyclase Y11_06321 SM01091 Transporter associated domain Y11_06401 SM00487 DEAD-like helicases superfamily Y11_06401 SM00490 helicase superfamily c-terminal domain Y11_06421 SM01022 Y11_06421 Y11_06451 SM00479 Y11_06451 Y11_06621 SM00421 helix_turn_helix, Lux Regulon Y11_06751 SM00387 Histidine kinase-like ATPases Y11_06761 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_06761 SM01134 Y11_06761 Y11_06781 SM01007 Class II Aldolase and Adducin N-terminal domain Y11_06901 SM00382 ATPases associated with a variety of cellular activities Y11_07081 SM00836 DALR anticodon binding domain Y11_07081 SM01016 Arginyl tRNA synthetase N terminal dom Y11_07241 SM01022 Y11_07241 Y11_07261 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_07261 SM00091 PAS domain Y11_07261 SM00267 diguanylate cyclase Y11_07271 SM00972 Spore Coat Protein U domain Y11_07301 SM00972 Spore Coat Protein U domain Y11_07311 SM00972 Spore Coat Protein U domain Y11_07321 SM00972 Spore Coat Protein U domain Y11_07371 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_07381 SM00945 ProQ/FINO family Y11_07391 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_07391 SM00245 tail specific protease Y11_07441 SM00346 helix_turn_helix isocitrate lyase regulation Y11_07451 SM00644 Y11_07451 Y11_07541 SM00382 ATPases associated with a variety of cellular activities Y11_07721 SM00382 ATPases associated with a variety of cellular activities Y11_07851 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y11_07901 SM00873 B3/4 domain Y11_07901 SM00874 tRNA synthetase B5 domain Y11_07901 SM00896 Ferredoxin-fold anticodon binding domain Y11_07911 SM00411 bacterial (prokaryotic) histone like domain Y11_07971 SM00382 ATPases associated with a variety of cellular activities Y11_08201 SM00382 ATPases associated with a variety of cellular activities Y11_08311 SM00354 helix_turn _helix lactose operon repressor Y11_08441 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_08501 SM00363 S4 RNA-binding domain Y11_08621 SM00382 ATPases associated with a variety of cellular activities Y11_08631 SM00382 ATPases associated with a variety of cellular activities Y11_08701 SM00382 ATPases associated with a variety of cellular activities Y11_08771 SM00953 Y11_08771 Y11_08781 SM00091 PAS domain Y11_08781 SM00382 ATPases associated with a variety of cellular activities Y11_08801 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Y11_08861 SM00148 Phospholipase C, catalytic domain (part); domain X Y11_08871 SM00890 Domain of unknown function Y11_08971 SM00382 ATPases associated with a variety of cellular activities Y11_08971 SM00487 DEAD-like helicases superfamily Y11_08971 SM00490 helicase superfamily c-terminal domain Y11_08971 SM00847 Helicase associated domain (HA2) Add an annotation Y11_08991 SM00530 Helix-turn-helix XRE-family like proteins Y11_09001 SM00020 Trypsin-like serine protease Y11_09041 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_09041 SM00387 Histidine kinase-like ATPases Y11_09041 SM00388 His Kinase A (phosphoacceptor) domain Y11_09051 SM00448 cheY-homologous receiver domain Y11_09051 SM00862 Transcriptional regulatory protein, C terminal Y11_09101 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Y11_09101 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Y11_09131 SM00100 Cyclic nucleotide-monophosphate binding domain Y11_09131 SM00419 helix_turn_helix, cAMP Regulatory protein Y11_09171 SM00871 Bacterial transcription activator, effector binding domain Y11_09181 SM00822 Y11_09181 Y11_09191 SM00098 Alkaline phosphatase homologues Y11_09291 SM00644 Y11_09291 Y11_09391 SM00354 helix_turn _helix lactose operon repressor Y11_09521 SM00344 helix_turn_helix ASNC type Y11_09541 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_09931 SM00421 helix_turn_helix, Lux Regulon Y11_10061 SM00342 helix_turn_helix, arabinose operon control protein Y11_10091 SM00382 ATPases associated with a variety of cellular activities Y11_10141 SM00382 ATPases associated with a variety of cellular activities Y11_10171 SM00382 ATPases associated with a variety of cellular activities Y11_10261 SM00342 helix_turn_helix, arabinose operon control protein Y11_10291 SM00900 Y11_10291 Y11_10311 SM00478 endonuclease III Y11_10311 SM00525 Y11_10311 Y11_10381 SM00357 Cold shock protein domain Y11_10381 SM00955 Y11_10381 Y11_10431 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_10431 SM01134 Y11_10431 Y11_10451 SM01007 Class II Aldolase and Adducin N-terminal domain Y11_10501 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Y11_10541 SM00530 Helix-turn-helix XRE-family like proteins Y11_10561 SM00028 Tetratricopeptide repeats Y11_10581 SM00014 Acid phosphatase homologues Y11_10641 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y11_10641 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y11_10641 SM00493 Y11_10641 Y11_10681 SM00822 Y11_10681 Y11_10711 SM00363 S4 RNA-binding domain Y11_10731 SM00481 DNA polymerase alpha chain like domain Y11_10811 SM00749 bacterial OsmY and nodulation domain Y11_10911 SM00052 Putative diguanylate phosphodiesterase Y11_10931 SM00155 Phospholipase D. Active site motifs. Y11_10951 SM00382 ATPases associated with a variety of cellular activities Y11_10961 SM00382 ATPases associated with a variety of cellular activities Y11_11041 SM00528 Domain in histone-like proteins of HNS family Y11_11051 SM00984 UDP binding domain Y11_11071 SM00448 cheY-homologous receiver domain Y11_11191 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Y11_11191 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Y11_11191 SM00493 Y11_11191 Y11_11231 SM00870 Y11_11231 Y11_11301 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_11331 SM00763 PrkA AAA domain Y11_11391 SM00052 Putative diguanylate phosphodiesterase Y11_11391 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_11391 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_11391 SM00091 PAS domain Y11_11391 SM00267 diguanylate cyclase Y11_11411 SM01005 Alanine racemase, C-terminal domain Y11_11451 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_11621 SM00341 Helicase and RNase D C-terminal Y11_11621 SM00474 3'-5' exonuclease Y11_11661 SM00487 DEAD-like helicases superfamily Y11_11661 SM00491 Y11_11661 Y11_11771 SM00257 Lysin motif Y11_11791 SM00382 ATPases associated with a variety of cellular activities Y11_11821 SM00382 ATPases associated with a variety of cellular activities Y11_11831 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_11961 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_11961 SM01134 Y11_11961 Y11_12051 SM00257 Lysin motif Y11_12101 SM00869 Autotransporter beta-domain Y11_12151 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_12151 SM00866 Y11_12151 Y11_12321 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_12321 SM00387 Histidine kinase-like ATPases Y11_12461 SM00481 DNA polymerase alpha chain like domain Y11_12491 SM00267 diguanylate cyclase Y11_12551 SM00937 Y11_12551 Y11_12591 SM01400 Y11_12591 Y11_12741 SM00530 Helix-turn-helix XRE-family like proteins Y11_13031 SM00382 ATPases associated with a variety of cellular activities Y11_13361 SM00530 Helix-turn-helix XRE-family like proteins Y11_13541 SM00465 GIY-YIG type nucleases (URI domain) Y11_13551 SM00421 helix_turn_helix, Lux Regulon Y11_13551 SM00448 cheY-homologous receiver domain Y11_13591 SM00642 Alpha-amylase domain Y11_13741 SM00903 Flavin reductase like domain Y11_13781 SM00612 Y11_13781 Y11_13791 SM00530 Helix-turn-helix XRE-family like proteins Y11_13941 SM00382 ATPases associated with a variety of cellular activities Y11_13961 SM00062 Bacterial periplasmic substrate-binding proteins Y11_13961 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_14101 SM00342 helix_turn_helix, arabinose operon control protein Y11_14111 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_14121 SM00478 endonuclease III Y11_14231 SM00382 ATPases associated with a variety of cellular activities Y11_14361 SM00047 Lysozyme subfamily 2 Y11_14451 SM00858 Y11_14451 Y11_14481 SM00634 Bacterial Ig-like domain (group 1) Y11_14561 SM00448 cheY-homologous receiver domain Y11_14571 SM00448 cheY-homologous receiver domain Y11_14581 SM00138 Methyltransferase, chemotaxis proteins Y11_14591 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_14591 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_14591 SM00319 Homologues of the ligand binding domain of Tar Y11_14601 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_14601 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_14601 SM00319 Homologues of the ligand binding domain of Tar Y11_14621 SM00260 Two component signalling adaptor domain Y11_14641 SM00073 Histidine Phosphotransfer domain Y11_14641 SM00260 Two component signalling adaptor domain Y11_14641 SM00387 Histidine kinase-like ATPases Y11_14641 SM01231 Y11_14641 Y11_14711 SM00829 Enoylreductase Y11_14721 SM00831 Cation transporter/ATPase, N-terminus Y11_14761 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_14761 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_14791 SM00357 Cold shock protein domain Y11_14801 SM00354 helix_turn _helix lactose operon repressor Y11_14811 SM01038 Beta galactosidase small chain Y11_14831 SM00829 Enoylreductase Y11_14851 SM00344 helix_turn_helix ASNC type Y11_15041 SM00382 ATPases associated with a variety of cellular activities Y11_15121 SM00953 Y11_15121 Y11_15131 SM00421 helix_turn_helix, Lux Regulon Y11_15131 SM00448 cheY-homologous receiver domain Y11_15141 SM00062 Bacterial periplasmic substrate-binding proteins Y11_15141 SM00387 Histidine kinase-like ATPases Y11_15141 SM00388 His Kinase A (phosphoacceptor) domain Y11_15141 SM00448 cheY-homologous receiver domain Y11_15371 SM00764 Citrate lyase ligase C-terminal domain Y11_15381 SM00091 PAS domain Y11_15381 SM00387 Histidine kinase-like ATPases Y11_15391 SM00448 cheY-homologous receiver domain Y11_15401 SM00421 helix_turn_helix, Lux Regulon Y11_15401 SM00448 cheY-homologous receiver domain Y11_15411 SM00387 Histidine kinase-like ATPases Y11_15451 SM00382 ATPases associated with a variety of cellular activities Y11_15481 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_15501 SM00260 Two component signalling adaptor domain Y11_15501 SM00448 cheY-homologous receiver domain Y11_15521 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_15521 SM01134 Y11_15521 Y11_15761 SM00382 ATPases associated with a variety of cellular activities Y11_15761 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_15861 SM00421 helix_turn_helix, Lux Regulon Y11_15911 SM00855 Phosphoglycerate mutase family Y11_15951 SM00382 ATPases associated with a variety of cellular activities Y11_16131 SM00342 helix_turn_helix, arabinose operon control protein Y11_16151 SM00877 Y11_16151 Y11_16161 SM00877 Y11_16161 Y11_16221 SM00877 Y11_16221 Y11_16231 SM00877 Y11_16231 Y11_16311 SM00877 Y11_16311 Y11_16321 SM00877 Y11_16321 Y11_16391 SM00382 ATPases associated with a variety of cellular activities Y11_16481 SM00382 ATPases associated with a variety of cellular activities Y11_16601 SM01350 Y11_16601 Y11_16741 SM00382 ATPases associated with a variety of cellular activities Y11_16811 SM01091 Transporter associated domain Y11_16961 SM00919 Malic enzyme, NAD binding domain Y11_16961 SM01274 Y11_16961 Y11_17131 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_17141 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_17141 SM00382 ATPases associated with a variety of cellular activities Y11_17161 SM00382 ATPases associated with a variety of cellular activities Y11_17181 SM00354 helix_turn _helix lactose operon repressor Y11_17241 SM00829 Enoylreductase Y11_17291 SM00382 ATPases associated with a variety of cellular activities Y11_17321 SM00852 Probable molybdopterin binding domain Y11_17361 SM00382 ATPases associated with a variety of cellular activities Y11_17431 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Y11_17501 SM00062 Bacterial periplasmic substrate-binding proteins Y11_17501 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Y11_17521 SM00382 ATPases associated with a variety of cellular activities Y11_17531 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_17531 SM00091 PAS domain Y11_17531 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_17561 SM00903 Flavin reductase like domain Y11_17631 SM00487 DEAD-like helicases superfamily Y11_17631 SM00488 Y11_17631 Y11_17631 SM00491 Y11_17631 Y11_17731 SM00382 ATPases associated with a variety of cellular activities Y11_17781 SM00450 Rhodanese Homology Domain Y11_17791 SM00382 ATPases associated with a variety of cellular activities Y11_17881 SM00382 ATPases associated with a variety of cellular activities Y11_17911 SM00507 HNH nucleases Y11_17921 SM01118 Y11_17921 Y11_17961 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_17991 SM00487 DEAD-like helicases superfamily Y11_17991 SM00490 helicase superfamily c-terminal domain Y11_18021 SM00382 ATPases associated with a variety of cellular activities Y11_18091 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_18121 SM00487 DEAD-like helicases superfamily Y11_18121 SM00490 helicase superfamily c-terminal domain Y11_18141 SM00382 ATPases associated with a variety of cellular activities Y11_18181 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_18181 SM00876 Biotin and Thiamin Synthesis associated domain Y11_18221 SM00382 ATPases associated with a variety of cellular activities Y11_18291 SM00382 ATPases associated with a variety of cellular activities Y11_18381 SM00477 DNA/RNA non-specific endonuclease Y11_18381 SM00892 DNA/RNA non-specific endonuclease Y11_18401 SM00855 Phosphoglycerate mutase family Y11_18571 SM00881 CoA binding domain Y11_18601 SM00861 Transketolase, pyrimidine binding domain Y11_18701 SM00797 Allophanate hydrolase subunit 2 Y11_18711 SM00796 Allophanate hydrolase subunit 1 Y11_18831 SM00387 Histidine kinase-like ATPases Y11_18831 SM00388 His Kinase A (phosphoacceptor) domain Y11_18841 SM00448 cheY-homologous receiver domain Y11_18841 SM00862 Transcriptional regulatory protein, C terminal Y11_18911 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_18941 SM01081 Putative carbohydrate binding domain Y11_19061 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_19091 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_19091 SM01091 Transporter associated domain Y11_19121 SM00062 Bacterial periplasmic substrate-binding proteins Y11_19151 SM00382 ATPases associated with a variety of cellular activities Y11_19271 SM00936 Penicillin-binding protein 5, C-terminal domain Y11_19301 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_19321 SM00267 diguanylate cyclase Y11_19341 SM00357 Cold shock protein domain Y11_19361 SM00421 helix_turn_helix, Lux Regulon Y11_19411 SM00382 ATPases associated with a variety of cellular activities Y11_19451 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Y11_19581 SM00778 Zinc-binding domain of primase-helicase Y11_19581 SM00885 D5 N terminal like Y11_19671 SM00840 Y11_19671 Y11_19701 SM01001 AIR carboxylase Y11_19741 SM00382 ATPases associated with a variety of cellular activities Y11_19761 SM00822 Y11_19761 Y11_19781 SM00244 prohibitin homologues Y11_19801 SM00422 helix_turn_helix, mercury resistance Y11_20031 SM00387 Histidine kinase-like ATPases Y11_20041 SM00493 Y11_20041 Y11_20061 SM00382 ATPases associated with a variety of cellular activities Y11_20291 SM00382 ATPases associated with a variety of cellular activities Y11_20391 SM00938 Nitrogen regulatory protein P-II Y11_20401 SM00382 ATPases associated with a variety of cellular activities Y11_20411 SM00382 ATPases associated with a variety of cellular activities Y11_20421 SM00344 helix_turn_helix ASNC type Y11_20481 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Y11_20511 SM00411 bacterial (prokaryotic) histone like domain Y11_20521 SM00382 ATPases associated with a variety of cellular activities Y11_20521 SM00464 Found in ATP-dependent protease La (LON) Y11_20541 SM00382 ATPases associated with a variety of cellular activities Y11_20541 SM00994 ClpX C4-type zinc finger Y11_20541 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_20701 SM00981 Y11_20701 Y11_20731 SM00861 Transketolase, pyrimidine binding domain Y11_20861 SM01323 Y11_20861 Y11_20981 SM00642 Alpha-amylase domain Y11_21021 SM00091 PAS domain Y11_21021 SM00387 Histidine kinase-like ATPases Y11_21021 SM00388 His Kinase A (phosphoacceptor) domain Y11_21031 SM00448 cheY-homologous receiver domain Y11_21031 SM00862 Transcriptional regulatory protein, C terminal Y11_21211 SM01068 Putative carbohydrate binding domain Y11_21251 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_21251 SM00866 Y11_21251 Y11_21271 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Y11_21441 SM00900 Y11_21441 Y11_21521 SM00710 Parallel beta-helix repeats Y11_21531 SM00912 haemagglutination activity domain Y11_21611 SM01007 Class II Aldolase and Adducin N-terminal domain Y11_21661 SM00382 ATPases associated with a variety of cellular activities Y11_21691 SM00062 Bacterial periplasmic substrate-binding proteins Y11_21791 SM00347 helix_turn_helix multiple antibiotic resistance protein Y11_21841 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y11_21861 SM01144 Y11_21861 Y11_21871 SM00881 CoA binding domain Y11_21881 SM00155 Phospholipase D. Active site motifs. Y11_21921 SM00363 S4 RNA-binding domain Y11_21941 SM00382 ATPases associated with a variety of cellular activities Y11_21941 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_21981 SM00830 Chorismate mutase type II Y11_21991 SM00830 Chorismate mutase type II Y11_22011 SM00448 cheY-homologous receiver domain Y11_22011 SM00850 LytTr DNA-binding domain Y11_22081 SM00382 ATPases associated with a variety of cellular activities Y11_22081 SM00962 SRP54-type protein, GTPase domain Y11_22081 SM00963 SRP54-type protein, helical bundle domain Y11_22101 SM01091 Transporter associated domain Y11_22161 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Y11_22181 SM00382 ATPases associated with a variety of cellular activities Y11_22261 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Y11_22321 SM00382 ATPases associated with a variety of cellular activities Y11_22351 SM01012 Y11_22351 Y11_22431 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y11_22441 SM00838 Elongation factor G C-terminus Y11_22441 SM00889 Elongation factor G, domain IV Y11_22471 SM01235 Y11_22471 Y11_22501 SM00822 Y11_22501 Y11_22531 SM00825 Beta-ketoacyl synthase Y11_22551 SM00382 ATPases associated with a variety of cellular activities Y11_22571 SM00382 ATPases associated with a variety of cellular activities Y11_22731 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Y11_22731 SM00534 ATPase domain of DNA mismatch repair MUTS family Y11_22751 SM00257 Lysin motif Y11_23121 SM00194 Protein tyrosine phosphatase, catalytic domain Y11_23121 SM00404 Protein tyrosine phosphatase, catalytic domain motif Y11_23151 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Y11_23161 SM00861 Transketolase, pyrimidine binding domain Y11_23251 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Y11_23261 SM00731 SprT homologues. Y11_23311 SM00732 Likely ribonuclease with RNase H fold. Y11_23381 SM01152 Y11_23381 Y11_23401 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_23451 SM00478 endonuclease III Y11_23451 SM00525 Y11_23451 Y11_23691 SM00382 ATPases associated with a variety of cellular activities Y11_23771 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_23811 SM00354 helix_turn _helix lactose operon repressor Y11_23901 SM00052 Putative diguanylate phosphodiesterase Y11_23901 SM00091 PAS domain Y11_23901 SM00267 diguanylate cyclase Y11_24191 SM00862 Transcriptional regulatory protein, C terminal Y11_24351 SM00858 Y11_24351 Y11_24421 SM00382 ATPases associated with a variety of cellular activities Y11_24481 SM00342 helix_turn_helix, arabinose operon control protein Y11_24751 SM00342 helix_turn_helix, arabinose operon control protein Y11_24781 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_24801 SM00563 Phosphate acyltransferases Y11_24811 SM00434 DNA Topoisomerase IV Y11_24851 SM00387 Histidine kinase-like ATPases Y11_24851 SM00433 TopoisomeraseII Y11_25001 SM01118 Y11_25001 Y11_25011 SM00287 Bacterial SH3 domain homologues Y11_25021 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_25041 SM00905 Dihydroneopterin aldolase Y11_25051 SM01207 Y11_25051 Y11_25091 SM00493 Y11_25091 Y11_25091 SM00766 DNA primase DnaG DnaB-binding Y11_25291 SM00530 Helix-turn-helix XRE-family like proteins Y11_25741 SM00869 Autotransporter beta-domain Y11_25751 SM00869 Autotransporter beta-domain Y11_25821 SM00858 Y11_25821 Y11_25871 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_25871 SM00895 Y11_25871 Y11_26111 SM00382 ATPases associated with a variety of cellular activities Y11_26191 SM00749 bacterial OsmY and nodulation domain Y11_26231 SM00073 Histidine Phosphotransfer domain Y11_26231 SM00091 PAS domain Y11_26231 SM00387 Histidine kinase-like ATPases Y11_26231 SM00388 His Kinase A (phosphoacceptor) domain Y11_26231 SM00448 cheY-homologous receiver domain Y11_26241 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_26351 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_26361 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_26431 SM00382 ATPases associated with a variety of cellular activities Y11_26491 SM00382 ATPases associated with a variety of cellular activities Y11_26621 SM00460 Transglutaminase/protease-like homologues Y11_26641 SM00642 Alpha-amylase domain Y11_26661 SM00354 helix_turn _helix lactose operon repressor Y11_26671 SM00831 Cation transporter/ATPase, N-terminus Y11_27101 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_27151 SM00052 Putative diguanylate phosphodiesterase Y11_27151 SM00267 diguanylate cyclase Y11_27161 SM00829 Enoylreductase Y11_27211 SM00878 Biotin carboxylase C-terminal domain Y11_27271 SM00267 diguanylate cyclase Y11_27291 SM00357 Cold shock protein domain Y11_27301 SM00357 Cold shock protein domain Y11_27371 SM00062 Bacterial periplasmic substrate-binding proteins Y11_27401 SM00382 ATPases associated with a variety of cellular activities Y11_27471 SM00530 Helix-turn-helix XRE-family like proteins Y11_27531 SM01005 Alanine racemase, C-terminal domain Y11_27541 SM00382 ATPases associated with a variety of cellular activities Y11_27551 SM00829 Enoylreductase Y11_27651 SM00563 Phosphate acyltransferases Y11_27711 SM00382 ATPases associated with a variety of cellular activities Y11_27801 SM00912 haemagglutination activity domain Y11_27811 SM01018 B12 binding domain Y11_27821 SM00346 helix_turn_helix isocitrate lyase regulation Y11_28001 SM00382 ATPases associated with a variety of cellular activities Y11_28091 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_28181 SM00487 DEAD-like helicases superfamily Y11_28181 SM00490 helicase superfamily c-terminal domain Y11_28191 SM00354 helix_turn _helix lactose operon repressor Y11_28221 SM00382 ATPases associated with a variety of cellular activities Y11_28221 SM01086 C-terminal, D2-small domain, of ClpB protein Y11_28531 SM00530 Helix-turn-helix XRE-family like proteins Y11_28591 SM00382 ATPases associated with a variety of cellular activities Y11_28691 SM00530 Helix-turn-helix XRE-family like proteins Y11_28721 SM00448 cheY-homologous receiver domain Y11_28721 SM00862 Transcriptional regulatory protein, C terminal Y11_28731 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_28731 SM00387 Histidine kinase-like ATPases Y11_28731 SM00388 His Kinase A (phosphoacceptor) domain Y11_28741 SM00342 helix_turn_helix, arabinose operon control protein Y11_28761 SM00971 Serine acetyltransferase, N-terminal Y11_28801 SM00450 Rhodanese Homology Domain Y11_28871 SM00829 Enoylreductase Y11_28951 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Y11_28951 SM01232 Y11_28951 Y11_29081 SM00849 Metallo-beta-lactamase superfamily Y11_29091 SM00052 Putative diguanylate phosphodiesterase Y11_29091 SM00091 PAS domain Y11_29091 SM00267 diguanylate cyclase Y11_29141 SM00532 Ligase N family Y11_29151 SM00072 Guanylate kinase homologues. Y11_29161 SM01409 Y11_29161 Y11_29171 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_29171 SM00954 Region found in RelA / SpoT proteins Y11_29191 SM00487 DEAD-like helicases superfamily Y11_29191 SM00490 helicase superfamily c-terminal domain Y11_29251 SM00421 helix_turn_helix, Lux Regulon Y11_29261 SM00421 helix_turn_helix, Lux Regulon Y11_29271 SM00421 helix_turn_helix, Lux Regulon Y11_29341 SM01230 Y11_29341 Y11_29361 SM00091 PAS domain Y11_29361 SM00387 Histidine kinase-like ATPases Y11_29361 SM00388 His Kinase A (phosphoacceptor) domain Y11_29371 SM00382 ATPases associated with a variety of cellular activities Y11_29371 SM00448 cheY-homologous receiver domain Y11_29381 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_29411 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y11_29411 SM00474 3'-5' exonuclease Y11_29411 SM00475 5'-3' exonuclease Y11_29411 SM00482 DNA polymerase A domain Y11_29491 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_29491 SM00895 Y11_29491 Y11_29521 SM00354 helix_turn _helix lactose operon repressor Y11_29561 SM00382 ATPases associated with a variety of cellular activities Y11_29591 SM00382 ATPases associated with a variety of cellular activities Y11_29601 SM00327 von Willebrand factor (vWF) type A domain Y11_29631 SM00344 helix_turn_helix ASNC type Y11_29661 SM01228 Y11_29661 Y11_29751 SM00382 ATPases associated with a variety of cellular activities Y11_29821 SM00382 ATPases associated with a variety of cellular activities Y11_29861 SM00062 Bacterial periplasmic substrate-binding proteins Y11_29921 SM00421 helix_turn_helix, Lux Regulon Y11_29921 SM00448 cheY-homologous receiver domain Y11_29931 SM00387 Histidine kinase-like ATPases Y11_29931 SM00388 His Kinase A (phosphoacceptor) domain Y11_29951 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_29951 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_29971 SM00382 ATPases associated with a variety of cellular activities Y11_29971 SM00930 Y11_29971 Y11_30021 SM01234 Y11_30021 Y11_30071 SM00382 ATPases associated with a variety of cellular activities Y11_30071 SM00760 Bacterial dnaA protein helix-turn-helix domain Y11_30081 SM00480 DNA polymerase III beta subunit Y11_30101 SM00387 Histidine kinase-like ATPases Y11_30101 SM00433 TopoisomeraseII Y11_30231 SM00642 Alpha-amylase domain Y11_30391 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_30411 SM00966 SpoVT / AbrB like domain Y11_30441 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_30441 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_30441 SM01358 Y11_30441 Y11_30551 SM00342 helix_turn_helix, arabinose operon control protein Y11_30621 SM00382 ATPases associated with a variety of cellular activities Y11_30651 SM00342 helix_turn_helix, arabinose operon control protein Y11_30721 SM00382 ATPases associated with a variety of cellular activities Y11_30901 SM00354 helix_turn _helix lactose operon repressor Y11_30981 SM00912 haemagglutination activity domain Y11_31011 SM00912 haemagglutination activity domain Y11_31041 SM00387 Histidine kinase-like ATPases Y11_31051 SM00421 helix_turn_helix, Lux Regulon Y11_31051 SM00448 cheY-homologous receiver domain Y11_31131 SM00382 ATPases associated with a variety of cellular activities Y11_31141 SM00382 ATPases associated with a variety of cellular activities Y11_31241 SM00028 Tetratricopeptide repeats Y11_31251 SM00052 Putative diguanylate phosphodiesterase Y11_31341 SM00052 Putative diguanylate phosphodiesterase Y11_31381 SM00869 Autotransporter beta-domain Y11_31431 SM00235 Zinc-dependent metalloprotease Y11_31441 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Y11_31751 SM00354 helix_turn _helix lactose operon repressor Y11_31791 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_31841 SM00642 Alpha-amylase domain Y11_31851 SM00642 Alpha-amylase domain Y11_31911 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_31911 SM01134 Y11_31911 Y11_31931 SM00450 Rhodanese Homology Domain Y11_31951 SM00421 helix_turn_helix, Lux Regulon Y11_32071 SM00899 Y11_32071 Y11_32081 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_32081 SM00732 Likely ribonuclease with RNase H fold. Y11_32151 SM00448 cheY-homologous receiver domain Y11_32151 SM00862 Transcriptional regulatory protein, C terminal Y11_32161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_32161 SM00387 Histidine kinase-like ATPases Y11_32161 SM00388 His Kinase A (phosphoacceptor) domain Y11_32211 SM00363 S4 RNA-binding domain Y11_32471 SM00354 helix_turn _helix lactose operon repressor Y11_32511 SM00382 ATPases associated with a variety of cellular activities Y11_32561 SM00100 Cyclic nucleotide-monophosphate binding domain Y11_32561 SM00419 helix_turn_helix, cAMP Regulatory protein Y11_32641 SM00062 Bacterial periplasmic substrate-binding proteins Y11_32651 SM00382 ATPases associated with a variety of cellular activities Y11_32701 SM00382 ATPases associated with a variety of cellular activities Y11_32831 SM00838 Elongation factor G C-terminus Y11_32831 SM00889 Elongation factor G, domain IV Y11_32871 SM01403 Y11_32871 Y11_32911 SM01382 Y11_32911 Y11_32911 SM01383 Y11_32911 Y11_32941 SM00322 K homology RNA-binding domain Y11_32971 SM01374 Y11_32971 Y11_32981 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y11_33111 SM00363 S4 RNA-binding domain Y11_33111 SM01390 Y11_33111 Y11_33121 SM00662 RNA polymerases D Y11_33151 SM00422 helix_turn_helix, mercury resistance Y11_33341 SM00382 ATPases associated with a variety of cellular activities Y11_33391 SM00382 ATPases associated with a variety of cellular activities Y11_33621 SM00060 Fibronectin type 3 domain Y11_33641 SM00487 DEAD-like helicases superfamily Y11_33641 SM00490 helicase superfamily c-terminal domain Y11_33661 SM00357 Cold shock protein domain Y11_33661 SM00382 ATPases associated with a variety of cellular activities Y11_33661 SM00959 Rho termination factor, N-terminal domain Y11_33701 SM00984 UDP binding domain Y11_33891 SM01219 Y11_33891 Y11_34031 SM00341 Helicase and RNase D C-terminal Y11_34031 SM00487 DEAD-like helicases superfamily Y11_34031 SM00490 helicase superfamily c-terminal domain Y11_34031 SM00956 Y11_34031 Y11_34251 SM00382 ATPases associated with a variety of cellular activities Y11_34251 SM00962 SRP54-type protein, GTPase domain Y11_34251 SM00963 SRP54-type protein, helical bundle domain Y11_34261 SM00382 ATPases associated with a variety of cellular activities Y11_34351 SM00382 ATPases associated with a variety of cellular activities Y11_34361 SM00382 ATPases associated with a variety of cellular activities Y11_34481 SM00382 ATPases associated with a variety of cellular activities Y11_34701 SM01004 Delta-aminolevulinic acid dehydratase Y11_34711 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y11_34891 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Y11_34891 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Y11_34901 SM00649 Ribosomal protein L11/L12 Y11_34951 SM00663 RNA polymerase I subunit A N-terminus Y11_34971 SM00876 Biotin and Thiamin Synthesis associated domain Y11_35081 SM00411 bacterial (prokaryotic) histone like domain Y11_35101 SM01209 Y11_35101 Y11_35101 SM01210 Y11_35101 Y11_35111 SM00798 AICARFT/IMPCHase bienzyme Y11_35111 SM00851 MGS-like domain Y11_35171 SM00421 helix_turn_helix, Lux Regulon Y11_35171 SM00448 cheY-homologous receiver domain Y11_35181 SM00387 Histidine kinase-like ATPases Y11_35181 SM00388 His Kinase A (phosphoacceptor) domain Y11_35181 SM00448 cheY-homologous receiver domain Y11_35311 SM00342 helix_turn_helix, arabinose operon control protein Y11_35401 SM00382 ATPases associated with a variety of cellular activities Y11_35581 SM00965 Secretin and TonB N terminus short domain Y11_35591 SM00382 ATPases associated with a variety of cellular activities Y11_35661 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_35671 SM00382 ATPases associated with a variety of cellular activities Y11_35751 SM00729 Elongator protein 3, MiaB family, Radical SAM Y11_35881 SM00883 Chaperonin 10 Kd subunit Y11_35921 SM00841 Elongation factor P, C-terminal Y11_35921 SM01185 Y11_35921 Y11_36041 SM00479 Y11_36041 Y11_36081 SM00257 Lysin motif Y11_36081 SM00646 Y11_36081 Y11_36091 SM00853 MutL C terminal dimerisation domain Y11_36091 SM01340 Y11_36091 Y11_36141 SM00244 prohibitin homologues Y11_36151 SM00244 prohibitin homologues Y11_36171 SM00788 Adenylosuccinate synthetase Y11_36191 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_36191 SM00357 Cold shock protein domain Y11_36191 SM00955 Y11_36191 Y11_36201 SM00967 RNA 2'-O ribose methyltransferase substrate binding Y11_36391 SM01091 Transporter associated domain Y11_36471 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_36471 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_36591 SM00387 Histidine kinase-like ATPases Y11_36591 SM00388 His Kinase A (phosphoacceptor) domain Y11_36601 SM00448 cheY-homologous receiver domain Y11_36601 SM00862 Transcriptional regulatory protein, C terminal Y11_36631 SM01103 Y11_36631 Y11_36651 SM00382 ATPases associated with a variety of cellular activities Y11_36701 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_36701 SM00322 K homology RNA-binding domain Y11_36711 SM00173 Ras subfamily of RAS small GTPases Y11_36741 SM01387 Y11_36741 Y11_36751 SM00316 Ribosomal protein S1-like RNA-binding domain Y11_36751 SM00322 K homology RNA-binding domain Y11_36761 SM00028 Tetratricopeptide repeats Y11_36771 SM00487 DEAD-like helicases superfamily Y11_36771 SM00490 helicase superfamily c-terminal domain Y11_36961 SM00382 ATPases associated with a variety of cellular activities Y11_37011 SM00859 Semialdehyde dehydrogenase, NAD binding domain Y11_37061 SM00382 ATPases associated with a variety of cellular activities Y11_37071 SM00382 ATPases associated with a variety of cellular activities Y11_37131 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_37131 SM00866 Y11_37131 Y11_37201 SM00382 ATPases associated with a variety of cellular activities Y11_37211 SM00382 ATPases associated with a variety of cellular activities Y11_37411 SM00530 Helix-turn-helix XRE-family like proteins Y11_37431 SM00382 ATPases associated with a variety of cellular activities Y11_37471 SM00421 helix_turn_helix, Lux Regulon Y11_37581 SM01133 Y11_37581 Y11_37621 SM00382 ATPases associated with a variety of cellular activities Y11_37731 SM01120 Y11_37731 Y11_37821 SM00091 PAS domain Y11_37831 SM00354 helix_turn _helix lactose operon repressor Y11_37841 SM00640 Glycosyl hydrolases family 32 Y11_37901 SM00267 diguanylate cyclase Y11_38001 SM00749 bacterial OsmY and nodulation domain Y11_38051 SM01133 Y11_38051 Y11_38061 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Y11_38111 SM00382 ATPases associated with a variety of cellular activities Y11_38131 SM00530 Helix-turn-helix XRE-family like proteins Y11_38141 SM00829 Enoylreductase Y11_38171 SM00382 ATPases associated with a variety of cellular activities Y11_38191 SM00267 diguanylate cyclase Y11_38211 SM00831 Cation transporter/ATPase, N-terminus Y11_38251 SM00855 Phosphoglycerate mutase family Y11_38261 SM00342 helix_turn_helix, arabinose operon control protein Y11_38261 SM00871 Bacterial transcription activator, effector binding domain Y11_38281 SM00448 cheY-homologous receiver domain Y11_38281 SM00862 Transcriptional regulatory protein, C terminal Y11_38371 SM00852 Probable molybdopterin binding domain Y11_38391 SM00247 Beta/gamma crystallins Y11_38421 SM00271 DnaJ molecular chaperone homology domain Y11_38461 SM00904 Riboflavin kinase Y11_38521 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Y11_38531 SM00851 MGS-like domain Y11_38531 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Y11_38601 SM00650 Ribosomal RNA adenine dimethylases Y11_38641 SM00271 DnaJ molecular chaperone homology domain Y11_38661 SM00634 Bacterial Ig-like domain (group 1) Y11_38671 SM00487 DEAD-like helicases superfamily Y11_38671 SM00490 helicase superfamily c-terminal domain Y11_38681 SM00486 DNA polymerase type-B family Y11_38701 SM00382 ATPases associated with a variety of cellular activities Y11_38851 SM01329 Y11_38851 Y11_38861 SM00917 LeuA allosteric (dimerisation) domain Y11_38931 SM00354 helix_turn _helix lactose operon repressor Y11_39091 SM00842 Cell division protein FtsA Y11_39101 SM00864 Tubulin/FtsZ family, GTPase domain Y11_39101 SM00865 Tubulin/FtsZ family, C-terminal domain Y11_39141 SM00957 SecA DEAD-like domain Y11_39141 SM00958 SecA preprotein cross-linking domain Y11_39191 SM01240 Y11_39191 Y11_39241 SM00644 Y11_39241 Y11_39291 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_39291 SM00895 Y11_39291 Y11_39341 SM00342 helix_turn_helix, arabinose operon control protein Y11_39461 SM00947 Carbonic anhydrase Y11_39471 SM00382 ATPases associated with a variety of cellular activities Y11_39601 SM00487 DEAD-like helicases superfamily Y11_39601 SM00490 helicase superfamily c-terminal domain Y11_39601 SM00847 Helicase associated domain (HA2) Add an annotation Y11_39621 SM00382 ATPases associated with a variety of cellular activities Y11_39741 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_39751 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_39761 SM00073 Histidine Phosphotransfer domain Y11_39771 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_39771 SM00387 Histidine kinase-like ATPases Y11_39771 SM00388 His Kinase A (phosphoacceptor) domain Y11_39771 SM00448 cheY-homologous receiver domain Y11_39791 SM00954 Region found in RelA / SpoT proteins Y11_39821 SM01192 Y11_39821 Y11_39821 SM01193 Y11_39821 Y11_39861 SM01011 Aminopeptidase P, N-terminal domain Y11_39941 SM00822 Y11_39941 Y11_40021 SM00448 cheY-homologous receiver domain Y11_40021 SM00862 Transcriptional regulatory protein, C terminal Y11_40041 SM00387 Histidine kinase-like ATPases Y11_40041 SM00388 His Kinase A (phosphoacceptor) domain Y11_40101 SM00937 Y11_40101 Y11_40141 SM00530 Helix-turn-helix XRE-family like proteins Y11_40161 SM00530 Helix-turn-helix XRE-family like proteins Y11_40221 SM00091 PAS domain Y11_40221 SM00267 diguanylate cyclase Y11_40251 SM00271 DnaJ molecular chaperone homology domain Y11_40271 SM00822 Y11_40271 Y11_40291 SM00947 Carbonic anhydrase Y11_40341 SM00382 ATPases associated with a variety of cellular activities Y11_40471 SM00862 Transcriptional regulatory protein, C terminal Y11_40491 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_40491 SM00319 Homologues of the ligand binding domain of Tar Y11_40501 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Y11_40521 SM00849 Metallo-beta-lactamase superfamily Y11_40571 SM00354 helix_turn _helix lactose operon repressor Y11_40601 SM00563 Phosphate acyltransferases Y11_40641 SM00927 DNA mismatch repair enzyme MutH Y11_40671 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Y11_40801 SM00646 Y11_40801 Y11_40811 SM00925 MltA specific insert domain Y11_40911 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Y11_40911 SM00475 5'-3' exonuclease Y11_41001 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Y11_41091 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Y11_41111 SM00935 Outer membrane protein (OmpH-like) Y11_41171 SM00481 DNA polymerase alpha chain like domain Y11_41211 SM00977 TilS substrate C-terminal domain Y11_41251 SM01322 Y11_41251 Y11_41341 SM00382 ATPases associated with a variety of cellular activities Y11_41341 SM00930 Y11_41341 Y11_41371 SM00825 Beta-ketoacyl synthase Y11_41461 SM00257 Lysin motif Y11_41471 SM00849 Metallo-beta-lactamase superfamily Y11_41501 SM00479 Y11_41501 Y11_41531 SM00382 ATPases associated with a variety of cellular activities Y11_41601 SM00345 helix_turn_helix gluconate operon transcriptional repressor Y11_41641 SM00342 helix_turn_helix, arabinose operon control protein Y11_41691 SM00357 Cold shock protein domain Y11_41701 SM00342 helix_turn_helix, arabinose operon control protein Y11_41721 SM00450 Rhodanese Homology Domain Y11_41781 SM00382 ATPases associated with a variety of cellular activities Y11_41791 SM00382 ATPases associated with a variety of cellular activities Y11_41851 SM00988 UreE urease accessory protein, N-terminal domain Y11_42051 SM00342 helix_turn_helix, arabinose operon control protein Y11_42181 SM00986 Uracil DNA glycosylase superfamily Y11_42181 SM00987 UreE urease accessory protein, C-terminal domain Y11_42221 SM00248 ankyrin repeats Y11_42261 SM00487 DEAD-like helicases superfamily Y11_42261 SM00490 helicase superfamily c-terminal domain Y11_42361 SM00358 Double-stranded RNA binding motif Y11_42361 SM00535 Ribonuclease III family Y11_42471 SM00062 Bacterial periplasmic substrate-binding proteins Y11_42491 SM01211 Y11_42491 Y11_42511 SM00387 Histidine kinase-like ATPases Y11_42511 SM00388 His Kinase A (phosphoacceptor) domain Y11_42531 SM00382 ATPases associated with a variety of cellular activities Y11_42531 SM00448 cheY-homologous receiver domain Y11_42551 SM00938 Nitrogen regulatory protein P-II Y11_42741 SM00271 DnaJ molecular chaperone homology domain Y11_42801 SM00869 Autotransporter beta-domain Y11_42841 SM01359 Y11_42841 Y11_42841 SM01360 Y11_42841 Y11_42861 SM00247 Beta/gamma crystallins Y11_42871 SM00562 Y11_42871 Y11_42891 SM00028 Tetratricopeptide repeats Y11_42901 SM00530 Helix-turn-helix XRE-family like proteins Y11_42951 SM00564 beta-propeller repeat Y11_42971 SM00382 ATPases associated with a variety of cellular activities Y11_43021 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_43021 SM01240 Y11_43021 Y11_43171 SM00116 Domain in cystathionine beta-synthase and other proteins. Y11_43181 SM00420 helix_turn_helix, Deoxyribose operon repressor Y11_43181 SM01134 Y11_43181 Y11_43241 SM00046 Diacylglycerol kinase catalytic domain (presumed) Y11_43271 SM00448 cheY-homologous receiver domain Y11_43271 SM00862 Transcriptional regulatory protein, C terminal Y11_43281 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Y11_43281 SM00387 Histidine kinase-like ATPases Y11_43281 SM00388 His Kinase A (phosphoacceptor) domain Y11_43351 SM00052 Putative diguanylate phosphodiesterase Y11_43361 SM00382 ATPases associated with a variety of cellular activities Y11_43421 SM00924 MgtE intracellular N domain Y11_43431 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Y11_43431 SM00091 PAS domain Y11_43431 SM00267 diguanylate cyclase Y11_p0001 SM00382 ATPases associated with a variety of cellular activities Y11_p0031 SM00220 Serine/Threonine protein kinases, catalytic domain Y11_p0261 SM00857 Resolvase, N terminal domain Y11_p0421 SM00470 ParB-like nuclease domain Y11_p0541 SM00194 Protein tyrosine phosphatase, catalytic domain Y11_p0541 SM00404 Protein tyrosine phosphatase, catalytic domain motif Y11_p0691 SM00342 helix_turn_helix, arabinose operon control protein Y11_p0781 SM00382 ATPases associated with a variety of cellular activities Y11_p0931 SM00364 Leucine-rich repeats, bacterial type Y11_p1071 SM00155 Phospholipase D. Active site motifs.