locus-tag class description CH53_1 PF02223 Thymidylate kinase CH53_10 PF01783 Ribosomal L32p protein family CH53_1000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH53_1000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH53_1001 PF07963 Prokaryotic N-terminal methylation motif CH53_1002 PF00437 Type II/IV secretion system protein CH53_1002 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH53_1003 PF00482 Type II secretion system (T2SS), protein F CH53_1004 PF00478 IMP dehydrogenase / GMP reductase domain CH53_1005 PF01121 Dephospho-CoA kinase CH53_1006 PF07072 Cell division protein CH53_1007 PF03884 DNA gyrase inhibitor YacG CH53_1008 PF00293 NUDIX domain CH53_1009 PF02810 SEC-C motif CH53_1009 PF07517 SecA DEAD-like domain CH53_1009 PF01043 SecA preprotein cross-linking domain CH53_1009 PF07516 SecA Wing and Scaffold domain CH53_1010 PF06558 Secretion monitor precursor protein (SecM) CH53_1012 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH53_1013 PF00091 Tubulin/FtsZ family, GTPase domain CH53_1013 PF12327 FtsZ family, C-terminal domain CH53_1014 PF02491 SHS2 domain inserted in FTSA CH53_1015 PF08478 POTRA domain, FtsQ-type CH53_1015 PF03799 Cell division protein FtsQ CH53_1016 PF01820 D-ala D-ala ligase N-terminus CH53_1016 PF07478 D-ala D-ala ligase C-terminus CH53_1017 PF08245 Mur ligase middle domain CH53_1017 PF02875 Mur ligase family, glutamate ligase domain CH53_1017 PF01225 Mur ligase family, catalytic domain CH53_1018 PF04101 Glycosyltransferase family 28 C-terminal domain CH53_1018 PF03033 Glycosyltransferase family 28 N-terminal domain CH53_1019 PF01098 Cell cycle protein CH53_1020 PF08245 Mur ligase middle domain CH53_1020 PF02875 Mur ligase family, glutamate ligase domain CH53_1021 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH53_1021 PF00953 Glycosyl transferase family 4 CH53_1022 PF01225 Mur ligase family, catalytic domain CH53_1022 PF02875 Mur ligase family, glutamate ligase domain CH53_1022 PF08245 Mur ligase middle domain CH53_1023 PF02875 Mur ligase family, glutamate ligase domain CH53_1023 PF01225 Mur ligase family, catalytic domain CH53_1023 PF08245 Mur ligase middle domain CH53_1024 PF03717 Penicillin-binding Protein dimerisation domain CH53_1024 PF00905 Penicillin binding protein transpeptidase domain CH53_1025 PF04999 Cell division protein FtsL CH53_1026 PF01795 MraW methylase family CH53_1027 PF02381 MraZ protein, putative antitoxin-like CH53_1028 PF06610 L-alanine exporter CH53_1029 PF00356 Bacterial regulatory proteins, lacI family CH53_1029 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_103 PF04358 DsrC like protein CH53_1030 PF10369 Small subunit of acetolactate synthase CH53_1031 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_1031 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_1031 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_1032 PF00501 AMP-binding enzyme CH53_1033 PF03466 LysR substrate binding domain CH53_1033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1035 PF00682 HMGL-like CH53_1035 PF08502 LeuA allosteric (dimerisation) domain CH53_1036 PF00180 Isocitrate/isopropylmalate dehydrogenase CH53_1037 PF00330 Aconitase family (aconitate hydratase) CH53_1038 PF00694 Aconitase C-terminal domain CH53_104 PF00708 Acylphosphatase CH53_1040 PF01212 Beta-eliminating lyase CH53_1041 PF03222 Tryptophan/tyrosine permease family CH53_1042 PF07690 Major Facilitator Superfamily CH53_1044 PF04055 Radical SAM superfamily CH53_1045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_1045 PF12793 Sugar transport-related sRNA regulator N-term CH53_1047 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1048 PF00005 ABC transporter CH53_1049 PF09335 SNARE associated Golgi protein CH53_105 PF10672 S-adenosylmethionine-dependent methyltransferase CH53_105 PF17785 PUA-like domain CH53_1051 PF03104 DNA polymerase family B, exonuclease domain CH53_1051 PF00136 DNA polymerase family B CH53_1052 PF12137 RNA polymerase recycling family C-terminal CH53_1052 PF18337 RapA N-terminal Tudor like domain CH53_1052 PF00176 SNF2 family N-terminal domain CH53_1052 PF00271 Helicase conserved C-terminal domain CH53_1052 PF18339 RapA N-terminal Tudor like domain 1 CH53_1053 PF00849 RNA pseudouridylate synthase CH53_1054 PF00226 DnaJ domain CH53_1054 PF05099 Tellurite resistance protein TerB CH53_1055 PF04453 LPS transport system D CH53_1055 PF03968 OstA-like protein CH53_1056 PF00639 PPIC-type PPIASE domain CH53_1056 PF09312 SurA N-terminal domain CH53_1057 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH53_1058 PF00398 Ribosomal RNA adenine dimethylase CH53_1059 PF04379 ApaG domain CH53_106 PF08755 Hemimethylated DNA-binding protein YccV like CH53_1060 PF00149 Calcineurin-like phosphoesterase CH53_1061 PF00186 Dihydrofolate reductase CH53_1062 PF12821 Threonine/Serine exporter, ThrE CH53_1063 PF06738 Putative threonine/serine exporter CH53_1064 PF01810 LysE type translocator CH53_1065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH53_1065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH53_1065 PF02142 MGS-like domain CH53_1066 PF00117 Glutamine amidotransferase class-I CH53_1066 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH53_1067 PF01113 Dihydrodipicolinate reductase, N-terminus CH53_1067 PF05173 Dihydrodipicolinate reductase, C-terminus CH53_1068 PF02401 LytB protein CH53_1069 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH53_107 PF13380 CoA binding domain CH53_1070 PF01252 Signal peptidase (SPase) II CH53_1071 PF06827 Zinc finger found in FPG and IleRS CH53_1071 PF00133 tRNA synthetases class I (I, L, M and V) CH53_1071 PF08264 Anticodon-binding domain of tRNA CH53_1072 PF06574 FAD synthetase CH53_1072 PF01687 Riboflavin kinase CH53_1073 PF01649 Ribosomal protein S20 CH53_1074 PF03466 LysR substrate binding domain CH53_1074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1075 PF06965 Na+/H+ antiporter 1 CH53_1076 PF00226 DnaJ domain CH53_1076 PF01556 DnaJ C terminal domain CH53_1076 PF00684 DnaJ central domain CH53_1077 PF00012 Hsp70 protein CH53_1078 PF01184 GPR1/FUN34/yaaH family CH53_108 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH53_1080 PF07690 Major Facilitator Superfamily CH53_1081 PF00994 Probable molybdopterin binding domain CH53_1082 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH53_1083 PF03883 Peroxide stress protein YaaA CH53_1084 PF00291 Pyridoxal-phosphate dependent enzyme CH53_1084 PF14821 Threonine synthase N terminus CH53_1085 PF08544 GHMP kinases C terminal CH53_1085 PF00288 GHMP kinases N terminal domain CH53_1086 PF01842 ACT domain CH53_1086 PF00696 Amino acid kinase family CH53_1086 PF00742 Homoserine dehydrogenase CH53_1086 PF03447 Homoserine dehydrogenase, NAD binding domain CH53_1086 PF13840 ACT domain CH53_1088 PF00486 Transcriptional regulatory protein, C terminal CH53_1088 PF00072 Response regulator receiver domain CH53_1089 PF05981 CreA protein CH53_109 PF02142 MGS-like domain CH53_1090 PF00300 Histidine phosphatase superfamily (branch 1) CH53_1091 PF12833 Helix-turn-helix domain CH53_1091 PF06445 GyrI-like small molecule binding domain CH53_1092 PF01931 Protein of unknown function DUF84 CH53_1093 PF01371 Trp repressor protein CH53_1094 PF01464 Transglycosylase SLT domain CH53_1094 PF14718 Soluble lytic murein transglycosylase L domain CH53_1095 PF00689 Cation transporting ATPase, C-terminus CH53_1095 PF00690 Cation transporter/ATPase, N-terminus CH53_1096 PF13689 YfiR/HmsC-like CH53_1097 PF00990 Diguanylate cyclase, GGDEF domain CH53_1097 PF17152 Periplasmic sensor domain CH53_1098 PF00691 OmpA family CH53_1099 PF00005 ABC transporter CH53_1099 PF12848 ABC transporter CH53_11 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH53_110 PF12462 DNA helicase IV / RNA helicase N terminal CH53_110 PF13361 UvrD-like helicase C-terminal domain CH53_110 PF00580 UvrD/REP helicase N-terminal domain CH53_1100 PF06379 L-rhamnose-proton symport protein (RhaT) CH53_1101 PF02311 AraC-like ligand binding domain CH53_1101 PF12833 Helix-turn-helix domain CH53_1102 PF02311 AraC-like ligand binding domain CH53_1102 PF12833 Helix-turn-helix domain CH53_1103 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_1103 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_1104 PF06134 L-rhamnose isomerase (RhaA) CH53_1105 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_1106 PF00465 Iron-containing alcohol dehydrogenase CH53_1107 PF05336 L-rhamnose mutarotase CH53_1108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1108 PF03466 LysR substrate binding domain CH53_1109 PF00107 Zinc-binding dehydrogenase CH53_1109 PF08240 Alcohol dehydrogenase GroES-like domain CH53_111 PF03733 Inner membrane component domain CH53_1110 PF01381 Helix-turn-helix CH53_1110 PF13521 AAA domain CH53_1111 PF18073 Rubredoxin metal binding domain CH53_1112 PF18429 Domain of unknown function (DUF5609) CH53_1113 PF10144 Bacterial virulence factor haemolysin CH53_1114 PF07804 HipA-like C-terminal domain CH53_1115 PF01048 Phosphorylase superfamily CH53_1116 PF01676 Metalloenzyme superfamily CH53_1117 PF02885 Glycosyl transferase family, helical bundle domain CH53_1117 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH53_1117 PF00591 Glycosyl transferase family, a/b domain CH53_1118 PF01791 DeoC/LacD family aldolase CH53_1119 PF07662 Na+ dependent nucleoside transporter C-terminus CH53_1119 PF07670 Nucleoside recognition CH53_1119 PF01773 Na+ dependent nucleoside transporter N-terminus CH53_112 PF12805 FUSC-like inner membrane protein yccS CH53_1120 PF01026 TatD related DNase CH53_1121 PF01734 Patatin-like phospholipase CH53_1122 PF07043 Protein of unknown function (DUF1328) CH53_1123 PF04972 BON domain CH53_1124 PF00009 Elongation factor Tu GTP binding domain CH53_1124 PF03144 Elongation factor Tu domain 2 CH53_1124 PF16658 Class II release factor RF3, C-terminal domain CH53_1125 PF00583 Acetyltransferase (GNAT) family CH53_1126 PF03603 DNA polymerase III psi subunit CH53_1127 PF05175 Methyltransferase small domain CH53_1127 PF08468 Methyltransferase small domain N-terminal CH53_1128 PF00248 Aldo/keto reductase family CH53_1129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1129 PF03466 LysR substrate binding domain CH53_113 PF04994 TfoX C-terminal domain CH53_113 PF04993 TfoX N-terminal domain CH53_1133 PF07256 Protein of unknown function (DUF1435) CH53_1134 PF00990 Diguanylate cyclase, GGDEF domain CH53_1135 PF00294 pfkB family carbohydrate kinase CH53_1136 PF11471 Maltoporin periplasmic N-terminal extension CH53_1136 PF02264 LamB porin CH53_1137 PF02378 Phosphotransferase system, EIIC CH53_1137 PF00367 phosphotransferase system, EIIB CH53_1138 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH53_1138 PF08244 Glycosyl hydrolases family 32 C terminal CH53_1139 PF13407 Periplasmic binding protein domain CH53_1139 PF00356 Bacterial regulatory proteins, lacI family CH53_114 PF03846 Cell division inhibitor SulA CH53_1140 PF00158 Sigma-54 interaction domain CH53_1140 PF00989 PAS fold CH53_1140 PF02954 Bacterial regulatory protein, Fis family CH53_1141 PF01095 Pectinesterase CH53_1146 PF16861 Carbamoyltransferase C-terminus CH53_1146 PF02543 Carbamoyltransferase N-terminus CH53_1148 PF00381 PTS HPr component phosphorylation site CH53_1148 PF00391 PEP-utilising enzyme, mobile domain CH53_1148 PF05524 PEP-utilising enzyme, N-terminal CH53_1148 PF03610 PTS system fructose IIA component CH53_1149 PF02734 DAK2 domain CH53_115 PF01389 OmpA-like transmembrane domain CH53_115 PF00691 OmpA family CH53_1150 PF02733 Dak1 domain CH53_1151 PF00465 Iron-containing alcohol dehydrogenase CH53_1152 PF00873 AcrB/AcrD/AcrF family CH53_1153 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_1155 PF13520 Amino acid permease CH53_1157 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH53_1158 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_1158 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_1159 PF00325 Bacterial regulatory proteins, crp family CH53_1159 PF04198 Putative sugar-binding domain CH53_116 PF17414 MatP C-terminal ribbon-helix-helix domain CH53_116 PF06303 MatP N-terminal domain CH53_1160 PF00005 ABC transporter CH53_1161 PF02653 Branched-chain amino acid transport system / permease component CH53_1162 PF02653 Branched-chain amino acid transport system / permease component CH53_1163 PF13407 Periplasmic binding protein domain CH53_1164 PF01791 DeoC/LacD family aldolase CH53_1165 PF03992 Antibiotic biosynthesis monooxygenase CH53_1166 PF00512 His Kinase A (phospho-acceptor) domain CH53_1166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1166 PF08521 Two-component sensor kinase N-terminal CH53_1167 PF00486 Transcriptional regulatory protein, C terminal CH53_1167 PF00072 Response regulator receiver domain CH53_117 PF05362 Lon protease (S16) C-terminal proteolytic domain CH53_117 PF13654 AAA domain CH53_1170 PF01970 Tripartite tricarboxylate transporter TctA family CH53_1171 PF08349 Protein of unknown function (DUF1722) CH53_1172 PF10696 Protein of unknown function (DUF2501) CH53_1176 PF13693 Winged helix-turn-helix DNA-binding CH53_1177 PF02525 Flavodoxin-like fold CH53_118 PF07977 FabA-like domain CH53_1181 PF00583 Acetyltransferase (GNAT) family CH53_1182 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH53_1182 PF08479 POTRA domain, ShlB-type CH53_1182 PF17287 POTRA domain CH53_1183 PF04829 Pre-toxin domain with VENN motif CH53_1183 PF13018 Extended Signal Peptide of Type V secretion system CH53_1183 PF05860 haemagglutination activity domain CH53_1183 PF13332 Hemagglutinin repeat CH53_1185 PF13610 DDE domain CH53_119 PF01638 HxlR-like helix-turn-helix CH53_12 PF02545 Maf-like protein CH53_120 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_120 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_1201 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_1201 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_1202 PF13953 PapC C-terminal domain CH53_1202 PF13954 PapC N-terminal domain CH53_1202 PF00577 Outer membrane usher protein CH53_1204 PF11924 Inverse autotransporter, beta-domain CH53_1204 PF09134 Invasin, domain 3 CH53_1204 PF02369 Bacterial Ig-like domain (group 1) CH53_121 PF03886 ABC-type transport auxiliary lipoprotein component CH53_1215 PF00589 Phage integrase family CH53_1215 PF13356 Arm DNA-binding domain CH53_1216 PF00589 Phage integrase family CH53_1216 PF13356 Arm DNA-binding domain CH53_122 PF02470 MlaD protein CH53_1225 PF17841 BID domain of Bartonella effector protein (Bep) CH53_1225 PF03389 MobA/MobL family CH53_1225 PF01443 Viral (Superfamily 1) RNA helicase CH53_1229 PF04917 Bacterial shufflon protein, N-terminal constant region CH53_123 PF04403 Paraquat-inducible protein A CH53_1231 PF08774 VRR-NUC domain CH53_1231 PF04851 Type III restriction enzyme, res subunit CH53_1232 PF18273 Type III R-M EcoP15I C-terminal domain CH53_1232 PF01555 DNA methylase CH53_1233 PF00589 Phage integrase family CH53_1233 PF13356 Arm DNA-binding domain CH53_1235 PF03739 Lipopolysaccharide export system permease LptF/LptG CH53_1236 PF03739 Lipopolysaccharide export system permease LptF/LptG CH53_1237 PF02789 Cytosol aminopeptidase family, N-terminal domain CH53_1237 PF00883 Cytosol aminopeptidase family, catalytic domain CH53_1238 PF04364 DNA polymerase III chi subunit, HolC CH53_1239 PF08264 Anticodon-binding domain of tRNA CH53_1239 PF00133 tRNA synthetases class I (I, L, M and V) CH53_1239 PF10458 Valyl tRNA synthetase tRNA binding arm CH53_124 PF16326 ABC transporter C-terminal domain CH53_124 PF12848 ABC transporter CH53_124 PF00005 ABC transporter CH53_1240 PF00583 Acetyltransferase (GNAT) family CH53_1241 PF06877 Regulator of ribonuclease activity B CH53_1242 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH53_1242 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH53_1243 PF04074 YhcH/YjgK/YiaL CH53_1245 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1247 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_1247 PF00005 ABC transporter CH53_1248 PF00005 ABC transporter CH53_1248 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_1249 PF02525 Flavodoxin-like fold CH53_125 PF01170 Putative RNA methylase family UPF0020 CH53_125 PF02926 THUMP domain CH53_125 PF10672 S-adenosylmethionine-dependent methyltransferase CH53_1250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1250 PF03466 LysR substrate binding domain CH53_1251 PF03477 ATP cone domain CH53_1251 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH53_1253 PF07702 UTRA domain CH53_1253 PF00392 Bacterial regulatory proteins, gntR family CH53_1254 PF06754 Phosphonate metabolism protein PhnG CH53_1255 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH53_1256 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH53_1257 PF06007 Phosphonate metabolism protein PhnJ CH53_1258 PF00005 ABC transporter CH53_1259 PF00005 ABC transporter CH53_126 PF00111 2Fe-2S iron-sulfur cluster binding domain CH53_126 PF03473 MOSC domain CH53_126 PF03476 MOSC N-terminal beta barrel domain CH53_1260 PF07969 Amidohydrolase family CH53_1262 PF13460 NAD(P)H-binding CH53_1263 PF12706 Beta-lactamase superfamily domain CH53_1265 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH53_1265 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH53_1265 PF01276 Orn/Lys/Arg decarboxylase, major domain CH53_1266 PF13520 Amino acid permease CH53_1267 PF13508 Acetyltransferase (GNAT) domain CH53_1268 PF01541 GIY-YIG catalytic domain CH53_127 PF07126 Cell-division protein ZapC CH53_1272 PF00296 Luciferase-like monooxygenase CH53_1273 PF00270 DEAD/DEAH box helicase CH53_1273 PF12343 Cold shock protein DEAD box A CH53_1273 PF03880 DbpA RNA binding domain CH53_1273 PF00271 Helicase conserved C-terminal domain CH53_1274 PF13181 Tetratricopeptide repeat CH53_1274 PF07719 Tetratricopeptide repeat CH53_1275 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH53_1275 PF01138 3' exoribonuclease family, domain 1 CH53_1275 PF03725 3' exoribonuclease family, domain 2 CH53_1275 PF00575 S1 RNA binding domain CH53_1275 PF00013 KH domain CH53_1276 PF00312 Ribosomal protein S15 CH53_1277 PF09157 Pseudouridine synthase II TruB, C-terminal CH53_1277 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH53_1277 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH53_1278 PF02033 Ribosome-binding factor A CH53_1279 PF03144 Elongation factor Tu domain 2 CH53_1279 PF04760 Translation initiation factor IF-2, N-terminal region CH53_1279 PF08364 Bacterial translation initiation factor IF-2 associated region CH53_1279 PF11987 Translation-initiation factor 2 CH53_1279 PF00009 Elongation factor Tu GTP binding domain CH53_128 PF01180 Dihydroorotate dehydrogenase CH53_1280 PF13184 NusA-like KH domain CH53_1280 PF08529 NusA N-terminal domain CH53_1280 PF00575 S1 RNA binding domain CH53_1281 PF17384 RimP C-terminal SH3 domain CH53_1281 PF02576 RimP N-terminal domain CH53_1284 PF03840 Preprotein translocase SecG subunit CH53_1285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH53_1285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH53_1285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH53_1285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH53_1286 PF00809 Pterin binding enzyme CH53_1287 PF06480 FtsH Extracellular CH53_1287 PF01434 Peptidase family M41 CH53_1287 PF17862 AAA+ lid domain CH53_1287 PF00004 ATPase family associated with various cellular activities (AAA) CH53_1288 PF01728 FtsJ-like methyltransferase CH53_1289 PF01985 CRS1 / YhbY (CRM) domain CH53_129 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH53_129 PF01433 Peptidase family M1 domain CH53_129 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH53_1290 PF03449 Transcription elongation factor, N-terminal CH53_1290 PF01272 Transcription elongation factor, GreA/GreB, C-term CH53_1291 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH53_1292 PF00486 Transcriptional regulatory protein, C terminal CH53_1292 PF00072 Response regulator receiver domain CH53_1293 PF00672 HAMP domain CH53_1293 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1293 PF00512 His Kinase A (phospho-acceptor) domain CH53_1294 PF01926 50S ribosome-binding GTPase CH53_1294 PF01018 GTP1/OBG CH53_1295 PF00892 EamA-like transporter family CH53_1296 PF01016 Ribosomal L27 protein CH53_1297 PF00829 Ribosomal prokaryotic L21 protein CH53_1298 PF00348 Polyprenyl synthetase CH53_13 PF00849 RNA pseudouridylate synthase CH53_13 PF01479 S4 domain CH53_130 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH53_130 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH53_1301 PF13693 Winged helix-turn-helix DNA-binding CH53_1302 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH53_1302 PF00056 lactate/malate dehydrogenase, NAD binding domain CH53_1303 PF02863 Arginine repressor, C-terminal domain CH53_1303 PF01316 Arginine repressor, DNA binding domain CH53_1306 PF02875 Mur ligase family, glutamate ligase domain CH53_1306 PF01225 Mur ligase family, catalytic domain CH53_1306 PF08245 Mur ligase middle domain CH53_1308 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH53_1309 PF00719 Inorganic pyrophosphatase CH53_131 PF01336 OB-fold nucleic acid binding domain CH53_131 PF00152 tRNA synthetases class II (D, K and N) CH53_1310 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH53_1311 PF04357 TamB, inner membrane protein subunit of TAM complex CH53_1312 PF17243 POTRA domain TamA domain 1 CH53_1312 PF07244 Surface antigen variable number repeat CH53_1312 PF01103 Surface antigen CH53_1313 PF01625 Peptide methionine sulfoxide reductase CH53_1314 PF00571 CBS domain CH53_1314 PF03471 Transporter associated domain CH53_1314 PF01595 Cyclin M transmembrane N-terminal domain CH53_1315 PF06526 Protein of unknown function (DUF1107) CH53_1316 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH53_1317 PF00459 Inositol monophosphatase family CH53_1318 PF00149 Calcineurin-like phosphoesterase CH53_1318 PF02872 5'-nucleotidase, C-terminal domain CH53_1319 PF04405 Domain of Unknown function (DUF542) CH53_1319 PF01814 Hemerythrin HHE cation binding domain CH53_132 PF00267 Gram-negative porin CH53_1320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH53_1320 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH53_1321 PF04225 Opacity-associated protein A LysM-like domain CH53_1321 PF08525 Opacity-associated protein A N-terminal motif CH53_1323 PF03948 Ribosomal protein L9, C-terminal domain CH53_1323 PF01281 Ribosomal protein L9, N-terminal domain CH53_1324 PF01084 Ribosomal protein S18 CH53_1325 PF01250 Ribosomal protein S6 CH53_1326 PF07338 Protein of unknown function (DUF1471) CH53_1327 PF00326 Prolyl oligopeptidase family CH53_1328 PF07338 Protein of unknown function (DUF1471) CH53_1329 PF18158 Adaptive response protein AidB N-terminal domain CH53_1329 PF02770 Acyl-CoA dehydrogenase, middle domain CH53_1329 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH53_133 PF00155 Aminotransferase class I and II CH53_1330 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH53_1330 PF00588 SpoU rRNA Methylase family CH53_1331 PF00773 RNB domain CH53_1331 PF08206 Ribonuclease B OB domain CH53_1331 PF08461 Ribonuclease R winged-helix domain CH53_1331 PF17876 Cold shock domain CH53_1331 PF00575 S1 RNA binding domain CH53_1332 PF02082 Transcriptional regulator CH53_1333 PF00709 Adenylosuccinate synthetase CH53_1334 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH53_1335 PF01145 SPFH domain / Band 7 family CH53_1336 PF12221 Bacterial membrane protein N terminal CH53_1336 PF01145 SPFH domain / Band 7 family CH53_1337 PF13167 GTP-binding GTPase N-terminal CH53_1337 PF01926 50S ribosome-binding GTPase CH53_1337 PF16360 GTP-binding GTPase Middle Region CH53_1338 PF17209 Hfq protein CH53_134 PF12792 CSS motif domain associated with EAL CH53_134 PF00563 EAL domain CH53_1340 PF08676 MutL C terminal dimerisation domain CH53_1340 PF01119 DNA mismatch repair protein, C-terminal domain CH53_1341 PF01520 N-acetylmuramoyl-L-alanine amidase CH53_1342 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH53_1343 PF01256 Carbohydrate kinase CH53_1343 PF03853 YjeF-related protein N-terminus CH53_1344 PF08331 Domain of unknown function (DUF1730) CH53_1348 PF00929 Exonuclease CH53_1349 PF03193 RsgA GTPase CH53_135 PF00753 Metallo-beta-lactamase superfamily CH53_1350 PF02666 Phosphatidylserine decarboxylase CH53_1351 PF12795 Mechanosensitive ion channel porin domain CH53_1351 PF00924 Mechanosensitive ion channel CH53_1351 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH53_1352 PF00152 tRNA synthetases class II (D, K and N) CH53_1353 PF02910 Fumarate reductase flavoprotein C-term CH53_1353 PF00890 FAD binding domain CH53_1354 PF13183 4Fe-4S dicluster domain CH53_1354 PF13085 2Fe-2S iron-sulfur cluster binding domain CH53_1355 PF02300 Fumarate reductase subunit C CH53_1356 PF02313 Fumarate reductase subunit D CH53_1357 PF08212 Lipocalin-like domain CH53_1358 PF00893 Small Multidrug Resistance protein CH53_136 PF05951 Bacterial protein of unknown function (DUF882) CH53_1360 PF08085 Entericidin EcnA/B family CH53_1361 PF08207 Elongation factor P (EF-P) KOW-like domain CH53_1361 PF01132 Elongation factor P (EF-P) OB domain CH53_1361 PF09285 Elongation factor P, C-terminal CH53_1362 PF04055 Radical SAM superfamily CH53_1363 PF13698 Domain of unknown function (DUF4156) CH53_1364 PF00118 TCP-1/cpn60 chaperonin family CH53_1365 PF00166 Chaperonin 10 Kd subunit CH53_1366 PF04186 FxsA cytoplasmic membrane protein CH53_1367 PF00206 Lyase CH53_1367 PF10415 Fumarase C C-terminus CH53_1368 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH53_1369 PF03091 CutA1 divalent ion tolerance protein CH53_137 PF03734 L,D-transpeptidase catalytic domain CH53_137 PF01471 Putative peptidoglycan binding domain CH53_1370 PF02683 Cytochrome C biogenesis protein transmembrane region CH53_1370 PF11412 Disulphide bond corrector protein DsbC CH53_1371 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_1371 PF01568 Molydopterin dinucleotide binding domain CH53_1371 PF00384 Molybdopterin oxidoreductase CH53_1372 PF13247 4Fe-4S dicluster domain CH53_1372 PF12800 4Fe-4S binding domain CH53_1373 PF13247 4Fe-4S dicluster domain CH53_1373 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH53_1373 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1374 PF07690 Major Facilitator Superfamily CH53_1375 PF08666 SAF domain CH53_1375 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH53_1376 PF17853 GGDEF-like domain CH53_1376 PF05651 Putative sugar diacid recognition CH53_1376 PF13556 PucR C-terminal helix-turn-helix domain CH53_1377 PF02595 Glycerate kinase family CH53_1378 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH53_1378 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH53_1379 PF03328 HpcH/HpaI aldolase/citrate lyase family CH53_138 PF16330 MukB hinge domain CH53_138 PF04310 MukB N-terminal CH53_1382 PF07075 Protein of unknown function (DUF1343) CH53_1384 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH53_1384 PF00933 Glycosyl hydrolase family 3 N terminal domain CH53_1385 PF01380 SIS domain CH53_1385 PF01418 Helix-turn-helix domain, rpiR family CH53_1386 PF13580 SIS domain CH53_1387 PF02378 Phosphotransferase system, EIIC CH53_1387 PF00367 phosphotransferase system, EIIB CH53_1389 PF02203 Tar ligand binding domain homologue CH53_1389 PF00672 HAMP domain CH53_1389 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_139 PF04288 MukE-like family CH53_1390 PF02901 Pyruvate formate lyase-like CH53_1390 PF01228 Glycine radical CH53_1391 PF00871 Acetokinase family CH53_1392 PF01490 Transmembrane amino acid transporter protein CH53_1393 PF00291 Pyridoxal-phosphate dependent enzyme CH53_1394 PF12848 ABC transporter CH53_1394 PF16326 ABC transporter C-terminal domain CH53_1394 PF00005 ABC transporter CH53_1395 PF10636 Hemin uptake protein hemP CH53_1396 PF00593 TonB dependent receptor CH53_1396 PF07715 TonB-dependent Receptor Plug Domain CH53_1397 PF05171 Haemin-degrading HemS.ChuX domain CH53_1398 PF01497 Periplasmic binding protein CH53_1399 PF01032 FecCD transport family CH53_14 PF10150 Ribonuclease E/G family CH53_14 PF12111 Polyribonucleotide phosphorylase C terminal CH53_14 PF00575 S1 RNA binding domain CH53_140 PF03882 MukF winged-helix domain CH53_140 PF17193 MukF C-terminal domain CH53_140 PF17192 MukF middle domain CH53_1400 PF00005 ABC transporter CH53_1402 PF00392 Bacterial regulatory proteins, gntR family CH53_1402 PF00155 Aminotransferase class I and II CH53_1404 PF07715 TonB-dependent Receptor Plug Domain CH53_1404 PF00593 TonB dependent receptor CH53_1405 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH53_1405 PF12795 Mechanosensitive ion channel porin domain CH53_1405 PF00924 Mechanosensitive ion channel CH53_1406 PF01312 FlhB HrpN YscU SpaS Family CH53_1407 PF01311 Bacterial export proteins, family 1 CH53_1408 PF01313 Bacterial export proteins, family 3 CH53_1409 PF00813 FliP family CH53_1412 PF18269 T3SS EscN ATPase C-terminal domain CH53_1412 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH53_1413 PF00771 FHIPEP family CH53_1415 PF07201 HrpJ-like domain CH53_1418 PF01514 Secretory protein of YscJ/FliF family CH53_142 PF02698 DUF218 domain CH53_1422 PF14525 AraC-binding-like domain CH53_1422 PF12833 Helix-turn-helix domain CH53_1428 PF04888 Secretion system effector C (SseC) like family CH53_143 PF01636 Phosphotransferase enzyme family CH53_1430 PF03433 EspA-like secreted protein CH53_1436 PF00512 His Kinase A (phospho-acceptor) domain CH53_1436 PF00672 HAMP domain CH53_1436 PF01627 Hpt domain CH53_1436 PF00072 Response regulator receiver domain CH53_1436 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH53_1436 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1437 PF00196 Bacterial regulatory proteins, luxR family CH53_1437 PF00072 Response regulator receiver domain CH53_1438 PF00375 Sodium:dicarboxylate symporter family CH53_1439 PF00501 AMP-binding enzyme CH53_1439 PF13193 AMP-binding enzyme C-terminal domain CH53_1439 PF16177 Acetyl-coenzyme A synthetase N-terminus CH53_144 PF02348 Cytidylyltransferase CH53_1440 PF04341 Protein of unknown function, DUF485 CH53_1441 PF00474 Sodium:solute symporter family CH53_1448 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_1449 PF01488 Shikimate / quinate 5-dehydrogenase CH53_1449 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH53_1449 PF08501 Shikimate dehydrogenase substrate binding domain CH53_145 PF03966 Trm112p-like protein CH53_1450 PF01300 Telomere recombination CH53_1451 PF01396 Topoisomerase DNA binding C4 zinc finger CH53_1452 PF04361 Protein of unknown function (DUF494) CH53_1453 PF02481 DNA recombination-mediator protein A CH53_1453 PF17782 DprA winged helix domain CH53_1454 PF01327 Polypeptide deformylase CH53_1455 PF02911 Formyl transferase, C-terminal domain CH53_1455 PF00551 Formyl transferase CH53_1456 PF01029 NusB family CH53_1456 PF01189 16S rRNA methyltransferase RsmB/F CH53_1457 PF02254 TrkA-N domain CH53_1457 PF02080 TrkA-C domain CH53_1458 PF01741 Large-conductance mechanosensitive channel, MscL CH53_1459 PF03889 Alternative ribosome-rescue factor A CH53_146 PF00313 'Cold-shock' DNA-binding domain CH53_1460 PF13411 MerR HTH family regulatory protein CH53_1461 PF09350 Domain of unknown function (DUF1992) CH53_1462 PF01196 Ribosomal protein L17 CH53_1463 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH53_1463 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH53_1463 PF01000 RNA polymerase Rpb3/RpoA insert domain CH53_1464 PF00163 Ribosomal protein S4/S9 N-terminal domain CH53_1464 PF01479 S4 domain CH53_1465 PF00411 Ribosomal protein S11 CH53_1466 PF00416 Ribosomal protein S13/S18 CH53_1467 PF00444 Ribosomal protein L36 CH53_1468 PF00344 SecY translocase CH53_1469 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH53_147 PF00313 'Cold-shock' DNA-binding domain CH53_1470 PF00327 Ribosomal protein L30p/L7e CH53_1471 PF03719 Ribosomal protein S5, C-terminal domain CH53_1471 PF00333 Ribosomal protein S5, N-terminal domain CH53_1472 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH53_1473 PF00347 Ribosomal protein L6 CH53_1474 PF00410 Ribosomal protein S8 CH53_1475 PF00253 Ribosomal protein S14p/S29e CH53_1476 PF00673 ribosomal L5P family C-terminus CH53_1476 PF00281 Ribosomal protein L5 CH53_1477 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH53_1477 PF00467 KOW motif CH53_1478 PF00238 Ribosomal protein L14p/L23e CH53_1479 PF00366 Ribosomal protein S17 CH53_1480 PF00831 Ribosomal L29 protein CH53_1481 PF00252 Ribosomal protein L16p/L10e CH53_1482 PF07650 KH domain CH53_1482 PF00189 Ribosomal protein S3, C-terminal domain CH53_1483 PF00237 Ribosomal protein L22p/L17e CH53_1484 PF00203 Ribosomal protein S19 CH53_1485 PF03947 Ribosomal Proteins L2, C-terminal domain CH53_1485 PF00181 Ribosomal Proteins L2, RNA binding domain CH53_1486 PF00276 Ribosomal protein L23 CH53_1487 PF00573 Ribosomal protein L4/L1 family CH53_1488 PF00297 Ribosomal protein L3 CH53_1489 PF00338 Ribosomal protein S10p/S20e CH53_149 PF07063 Domain of unknown function (DUF1338) CH53_1490 PF00210 Ferritin-like domain CH53_1491 PF04324 BFD-like [2Fe-2S] binding domain CH53_1492 PF03143 Elongation factor Tu C-terminal domain CH53_1492 PF03144 Elongation factor Tu domain 2 CH53_1492 PF00009 Elongation factor Tu GTP binding domain CH53_1493 PF00679 Elongation factor G C-terminus CH53_1493 PF14492 Elongation Factor G, domain II CH53_1493 PF03764 Elongation factor G, domain IV CH53_1493 PF00009 Elongation factor Tu GTP binding domain CH53_1493 PF03144 Elongation factor Tu domain 2 CH53_1494 PF00177 Ribosomal protein S7p/S5e CH53_1495 PF00164 Ribosomal protein S12/S23 CH53_1496 PF04077 DsrH like protein CH53_1497 PF02635 DsrE/DsrF-like family CH53_1498 PF02635 DsrE/DsrF-like family CH53_1499 PF08348 YheO-like PAS domain CH53_1499 PF13309 HTH domain CH53_15 PF03992 Antibiotic biosynthesis monooxygenase CH53_150 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH53_1500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH53_1500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH53_1501 PF04102 SlyX CH53_1502 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH53_1503 PF09526 Probable metal-binding protein (DUF2387) CH53_1504 PF02254 TrkA-N domain CH53_1504 PF00999 Sodium/hydrogen exchanger family CH53_1505 PF02525 Flavodoxin-like fold CH53_1506 PF00005 ABC transporter CH53_1506 PF12848 ABC transporter CH53_1507 PF00535 Glycosyl transferase family 2 CH53_1508 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH53_151 PF00664 ABC transporter transmembrane region CH53_151 PF00005 ABC transporter CH53_1510 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1511 PF00005 ABC transporter CH53_1512 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH53_1513 PF02567 Phenazine biosynthesis-like protein CH53_1514 PF01810 LysE type translocator CH53_1515 PF00561 alpha/beta hydrolase fold CH53_1516 PF06794 Uncharacterised protein family (UPF0270) CH53_1517 PF00485 Phosphoribulokinase / Uridine kinase family CH53_1518 PF02566 OsmC-like protein CH53_1519 PF13545 Crp-like helix-turn-helix domain CH53_1519 PF00027 Cyclic nucleotide-binding domain CH53_152 PF03772 Competence protein CH53_152 PF00753 Metallo-beta-lactamase superfamily CH53_1520 PF12805 FUSC-like inner membrane protein yccS CH53_1521 PF00202 Aminotransferase class-III CH53_1522 PF00117 Glutamine amidotransferase class-I CH53_1525 PF05872 Bacterial protein of unknown function (DUF853) CH53_1526 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH53_1527 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH53_1527 PF02056 Family 4 glycosyl hydrolase CH53_1528 PF00356 Bacterial regulatory proteins, lacI family CH53_1529 PF07715 TonB-dependent Receptor Plug Domain CH53_1529 PF00593 TonB dependent receptor CH53_153 PF00216 Bacterial DNA-binding protein CH53_1531 PF07690 Major Facilitator Superfamily CH53_1532 PF07969 Amidohydrolase family CH53_1533 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH53_1533 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1533 PF04324 BFD-like [2Fe-2S] binding domain CH53_1533 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH53_1533 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH53_1534 PF13806 Rieske-like [2Fe-2S] domain CH53_1535 PF01226 Formate/nitrite transporter CH53_1536 PF10414 Sirohaem synthase dimerisation region CH53_1536 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_1536 PF14824 Sirohaem biosynthesis protein central CH53_1537 PF00579 tRNA synthetases class I (W and Y) CH53_1538 PF13419 Haloacid dehalogenase-like hydrolase CH53_1539 PF00834 Ribulose-phosphate 3 epimerase family CH53_154 PF00575 S1 RNA binding domain CH53_1540 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH53_1541 PF05036 Sporulation related domain CH53_1542 PF01761 3-dehydroquinate synthase CH53_1543 PF01202 Shikimate kinase CH53_1544 PF00263 Bacterial type II and III secretion system protein CH53_1544 PF03958 Bacterial type II/III secretion system short domain CH53_1549 PF17092 Penicillin-binding protein OB-like domain CH53_1549 PF00912 Transglycosylase CH53_1549 PF00905 Penicillin binding protein transpeptidase domain CH53_155 PF02224 Cytidylate kinase CH53_1550 PF00293 NUDIX domain CH53_1551 PF07095 Intracellular growth attenuator protein IgaA CH53_1552 PF13419 Haloacid dehalogenase-like hydrolase CH53_1553 PF01479 S4 domain CH53_1554 PF01430 Hsp33 protein CH53_1555 PF01293 Phosphoenolpyruvate carboxykinase CH53_1557 PF00672 HAMP domain CH53_1557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1557 PF00512 His Kinase A (phospho-acceptor) domain CH53_1558 PF00072 Response regulator receiver domain CH53_1558 PF00486 Transcriptional regulatory protein, C terminal CH53_1559 PF03449 Transcription elongation factor, N-terminal CH53_1559 PF01272 Transcription elongation factor, GreA/GreB, C-term CH53_156 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH53_1560 PF09371 Tex-like protein N-terminal domain CH53_1560 PF17674 HHH domain CH53_1560 PF00575 S1 RNA binding domain CH53_1560 PF16921 Tex protein YqgF-like domain CH53_1561 PF04023 FeoA domain CH53_1562 PF07664 Ferrous iron transport protein B C terminus CH53_1562 PF17910 FeoB cytosolic helical domain CH53_1562 PF07670 Nucleoside recognition CH53_1562 PF02421 Ferrous iron transport protein B CH53_1563 PF09012 FeoC like transcriptional regulator CH53_1564 PF07338 Protein of unknown function (DUF1471) CH53_1565 PF00561 alpha/beta hydrolase fold CH53_1566 PF00156 Phosphoribosyl transferase domain CH53_1567 PF01521 Iron-sulphur cluster biosynthesis CH53_1567 PF01106 NifU-like domain CH53_1568 PF02446 4-alpha-glucanotransferase CH53_1569 PF00343 Carbohydrate phosphorylase CH53_157 PF00266 Aminotransferase class-V CH53_1570 PF17874 MalT-like TPR region CH53_1570 PF00196 Bacterial regulatory proteins, luxR family CH53_1571 PF00581 Rhodanese-like domain CH53_1572 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH53_1572 PF01694 Rhomboid family CH53_1573 PF00455 DeoR C terminal sensor domain CH53_1573 PF08220 DeoR-like helix-turn-helix domain CH53_1575 PF01266 FAD dependent oxidoreductase CH53_1575 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH53_1576 PF00343 Carbohydrate phosphorylase CH53_1577 PF00534 Glycosyl transferases group 1 CH53_1577 PF08323 Starch synthase catalytic domain CH53_1578 PF00483 Nucleotidyl transferase CH53_1579 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH53_1579 PF18390 Glycogen debranching enzyme C-terminal domain CH53_1579 PF00128 Alpha amylase, catalytic domain CH53_158 PF17763 Glutaminase/Asparaginase C-terminal domain CH53_158 PF00710 Asparaginase, N-terminal CH53_1580 PF02806 Alpha amylase, C-terminal all-beta domain CH53_1580 PF00128 Alpha amylase, catalytic domain CH53_1580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH53_1581 PF07694 5TMR of 5TMR-LYT CH53_1581 PF06580 Histidine kinase CH53_1582 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1582 PF03466 LysR substrate binding domain CH53_1583 PF03306 Alpha-acetolactate decarboxylase CH53_1584 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_1584 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_1584 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_1585 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH53_1585 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH53_1586 PF01914 MarC family integral membrane protein CH53_1587 PF01202 Shikimate kinase CH53_1588 PF02447 GntP family permease CH53_1589 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_1589 PF00356 Bacterial regulatory proteins, lacI family CH53_159 PF18381 YcaO cyclodehydratase C-terminal domain CH53_159 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH53_1590 PF02678 Pirin CH53_1590 PF17954 Quercetinase C-terminal cupin domain CH53_1591 PF00583 Acetyltransferase (GNAT) family CH53_1592 PF01261 Xylose isomerase-like TIM barrel CH53_1593 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH53_1593 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH53_1594 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_1594 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_1594 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_1595 PF00294 pfkB family carbohydrate kinase CH53_1597 PF04962 KduI/IolB family CH53_1598 PF00171 Aldehyde dehydrogenase family CH53_16 PF01979 Amidohydrolase family CH53_160 PF01226 Formate/nitrite transporter CH53_1600 PF07690 Major Facilitator Superfamily CH53_1601 PF03466 LysR substrate binding domain CH53_1601 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1602 PF03466 LysR substrate binding domain CH53_1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1603 PF00144 Beta-lactamase CH53_1605 PF01384 Phosphate transporter family CH53_1606 PF10625 Universal stress protein B (UspB) CH53_1607 PF00582 Universal stress protein family CH53_1608 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH53_1608 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH53_1609 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH53_1609 PF08548 Peptidase M10 serralysin C terminal CH53_161 PF02901 Pyruvate formate lyase-like CH53_161 PF01228 Glycine radical CH53_1610 PF04445 Putative SAM-dependent methyltransferase CH53_1611 PF01432 Peptidase family M3 CH53_1612 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH53_1613 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH53_1613 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1615 PF01381 Helix-turn-helix CH53_1615 PF08671 Anti-repressor SinI CH53_1616 PF03631 Virulence factor BrkB CH53_1617 PF02611 CDP-diacylglycerol pyrophosphatase CH53_1618 PF05170 AsmA family CH53_1619 PF00563 EAL domain CH53_162 PF04055 Radical SAM superfamily CH53_1620 PF01361 Tautomerase enzyme CH53_1621 PF00294 pfkB family carbohydrate kinase CH53_1622 PF05193 Peptidase M16 inactive domain CH53_1622 PF00675 Insulinase (Peptidase family M16) CH53_1623 PF00375 Sodium:dicarboxylate symporter family CH53_1625 PF06917 Periplasmic pectate lyase CH53_1626 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH53_1628 PF00577 Outer membrane usher protein CH53_1628 PF13954 PapC N-terminal domain CH53_1628 PF13953 PapC C-terminal domain CH53_1629 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_1629 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_163 PF07690 Major Facilitator Superfamily CH53_1631 PF00563 EAL domain CH53_1631 PF17154 Gammaproteobacterial periplasmic sensor domain CH53_1631 PF00990 Diguanylate cyclase, GGDEF domain CH53_1631 PF00672 HAMP domain CH53_1632 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CH53_1633 PF01270 Glycosyl hydrolases family 8 CH53_1634 PF03170 Bacterial cellulose synthase subunit CH53_1635 PF07238 PilZ domain CH53_1635 PF00535 Glycosyl transferase family 2 CH53_1636 PF06564 Cellulose biosynthesis protein BcsQ CH53_1638 PF10995 Cellulose biosynthesis GIL CH53_1639 PF11120 Cellulose biosynthesis protein BcsF CH53_164 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH53_164 PF02403 Seryl-tRNA synthetase N-terminal domain CH53_1640 PF11658 Cellulose biosynthesis protein BcsG CH53_1641 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_1641 PF00005 ABC transporter CH53_1642 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_1642 PF00005 ABC transporter CH53_1643 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1643 PF12911 N-terminal TM domain of oligopeptide transport permease C CH53_1644 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_1648 PF07690 Major Facilitator Superfamily CH53_1649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1649 PF07730 Histidine kinase CH53_1649 PF05231 MASE1 CH53_165 PF00004 ATPase family associated with various cellular activities (AAA) CH53_165 PF16193 AAA C-terminal domain CH53_165 PF12002 MgsA AAA+ ATPase C terminal CH53_1650 PF00196 Bacterial regulatory proteins, luxR family CH53_1650 PF00072 Response regulator receiver domain CH53_1651 PF08019 Phosphoethanolamine transferase EptA/EptB CH53_1651 PF00884 Sulfatase CH53_1652 PF02566 OsmC-like protein CH53_1653 PF12146 Serine aminopeptidase, S33 CH53_1655 PF00324 Amino acid permease CH53_1656 PF00221 Aromatic amino acid lyase CH53_1657 PF01175 Urocanase Rossmann-like domain CH53_1657 PF17391 Urocanase N-terminal domain CH53_1657 PF17392 Urocanase C-terminal domain CH53_166 PF03548 Outer membrane lipoprotein carrier protein LolA CH53_1661 PF12833 Helix-turn-helix domain CH53_1662 PF02653 Branched-chain amino acid transport system / permease component CH53_1663 PF00005 ABC transporter CH53_1664 PF13407 Periplasmic binding protein domain CH53_1666 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_1666 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_1668 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_1668 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_1669 PF00577 Outer membrane usher protein CH53_1669 PF13954 PapC N-terminal domain CH53_1669 PF13953 PapC C-terminal domain CH53_167 PF01580 FtsK/SpoIIIE family CH53_167 PF17854 FtsK alpha domain CH53_167 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH53_167 PF09397 Ftsk gamma domain CH53_1670 PF00419 Fimbrial protein CH53_1671 PF00857 Isochorismatase family CH53_1672 PF01757 Acyltransferase family CH53_1674 PF07690 Major Facilitator Superfamily CH53_1675 PF09106 Elongation factor SelB, winged helix CH53_1675 PF00009 Elongation factor Tu GTP binding domain CH53_1675 PF09107 Elongation factor SelB, winged helix CH53_1675 PF03144 Elongation factor Tu domain 2 CH53_1676 PF12390 Selenocysteine synthase N terminal CH53_1676 PF03841 L-seryl-tRNA selenium transferase CH53_1677 PF04216 Protein involved in formate dehydrogenase formation CH53_1678 PF01292 Prokaryotic cytochrome b561 CH53_1679 PF13247 4Fe-4S dicluster domain CH53_1679 PF09163 Formate dehydrogenase N, transmembrane CH53_168 PF01037 Lrp/AsnC ligand binding domain CH53_1680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_1680 PF00384 Molybdopterin oxidoreductase CH53_1680 PF01568 Molydopterin dinucleotide binding domain CH53_1681 PF00384 Molybdopterin oxidoreductase CH53_1681 PF01568 Molydopterin dinucleotide binding domain CH53_1681 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_1682 PF02634 FdhD/NarQ family CH53_1683 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH53_1683 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH53_1684 PF00672 HAMP domain CH53_1684 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_1684 PF02203 Tar ligand binding domain homologue CH53_1685 PF03473 MOSC domain CH53_1685 PF03475 3-alpha domain CH53_1686 PF04221 RelB antitoxin CH53_1688 PF10928 Protein of unknown function (DUF2810) CH53_1689 PF00155 Aminotransferase class I and II CH53_1689 PF00392 Bacterial regulatory proteins, gntR family CH53_1691 PF05068 Mannitol repressor CH53_1692 PF08125 Mannitol dehydrogenase C-terminal domain CH53_1692 PF01232 Mannitol dehydrogenase Rossmann domain CH53_1693 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_1693 PF02378 Phosphotransferase system, EIIC CH53_1693 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH53_1694 PF11254 Protein of unknown function (DUF3053) CH53_1695 PF02092 Glycyl-tRNA synthetase beta subunit CH53_1695 PF05746 DALR anticodon binding domain CH53_1696 PF02091 Glycyl-tRNA synthetase alpha subunit CH53_1697 PF03352 Methyladenine glycosylase CH53_1698 PF00583 Acetyltransferase (GNAT) family CH53_17 PF06183 DinI-like family CH53_170 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1701 PF13488 Glycine zipper CH53_1701 PF00691 OmpA family CH53_1703 PF07690 Major Facilitator Superfamily CH53_1704 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_1704 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH53_1705 PF00128 Alpha amylase, catalytic domain CH53_1706 PF00155 Aminotransferase class I and II CH53_1707 PF06826 Predicted Permease Membrane Region CH53_1707 PF02080 TrkA-C domain CH53_1708 PF00011 Hsp20/alpha crystallin family CH53_1709 PF00011 Hsp20/alpha crystallin family CH53_171 PF00664 ABC transporter transmembrane region CH53_171 PF00005 ABC transporter CH53_1710 PF07119 Protein of unknown function (DUF1375) CH53_1711 PF12566 Protein of unknown function (DUF3748) CH53_1711 PF07676 WD40-like Beta Propeller Repeat CH53_1712 PF07690 Major Facilitator Superfamily CH53_1713 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH53_1713 PF13378 Enolase C-terminal domain-like CH53_1714 PF01081 KDPG and KHG aldolase CH53_1715 PF05035 2-keto-3-deoxy-galactonokinase CH53_1716 PF07729 FCD domain CH53_1716 PF00392 Bacterial regulatory proteins, gntR family CH53_1717 PF08348 YheO-like PAS domain CH53_1717 PF13309 HTH domain CH53_1718 PF00291 Pyridoxal-phosphate dependent enzyme CH53_1719 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH53_172 PF00664 ABC transporter transmembrane region CH53_172 PF00005 ABC transporter CH53_1720 PF07702 UTRA domain CH53_1720 PF00392 Bacterial regulatory proteins, gntR family CH53_1721 PF00232 Glycosyl hydrolase family 1 CH53_1722 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH53_1723 PF02378 Phosphotransferase system, EIIC CH53_1724 PF00480 ROK family CH53_1725 PF02264 LamB porin CH53_1725 PF11471 Maltoporin periplasmic N-terminal extension CH53_1726 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH53_1728 PF00204 DNA gyrase B CH53_1728 PF01751 Toprim domain CH53_1728 PF00986 DNA gyrase B subunit, carboxyl terminus CH53_1728 PF18053 DNA gyrase B subunit insert domain CH53_1728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1729 PF02463 RecF/RecN/SMC N terminal domain CH53_173 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH53_1730 PF00712 DNA polymerase III beta subunit, N-terminal domain CH53_1730 PF02768 DNA polymerase III beta subunit, C-terminal domain CH53_1730 PF02767 DNA polymerase III beta subunit, central domain CH53_1731 PF11638 DnaA N-terminal domain CH53_1731 PF08299 Bacterial dnaA protein helix-turn-helix CH53_1731 PF00308 Bacterial dnaA protein CH53_1732 PF00468 Ribosomal protein L34 CH53_1733 PF00825 Ribonuclease P CH53_1734 PF01809 Putative membrane protein insertion efficiency factor CH53_1735 PF02096 60Kd inner membrane protein CH53_1735 PF14849 YidC periplasmic domain CH53_1736 PF12631 MnmE helical domain CH53_1736 PF10396 GTP-binding protein TrmE N-terminus CH53_1736 PF01926 50S ribosome-binding GTPase CH53_1737 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH53_1737 PF07055 Enoyl reductase FAD binding domain CH53_1737 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH53_1738 PF03180 NLPA lipoprotein CH53_1739 PF00005 ABC transporter CH53_1739 PF09383 NIL domain CH53_174 PF01176 Translation initiation factor 1A / IF-1 CH53_1740 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1741 PF00672 HAMP domain CH53_1741 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_1741 PF02203 Tar ligand binding domain homologue CH53_1742 PF03358 NADPH-dependent FMN reductase CH53_1743 PF00512 His Kinase A (phospho-acceptor) domain CH53_1743 PF00989 PAS fold CH53_1743 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1744 PF00072 Response regulator receiver domain CH53_1744 PF00196 Bacterial regulatory proteins, luxR family CH53_1746 PF00860 Permease family CH53_1747 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1748 PF13419 Haloacid dehalogenase-like hydrolase CH53_175 PF17871 AAA lid domain CH53_175 PF00004 ATPase family associated with various cellular activities (AAA) CH53_175 PF02861 Clp amino terminal domain, pathogenicity island component CH53_175 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_175 PF07724 AAA domain (Cdc48 subfamily) CH53_1750 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_1752 PF01895 PhoU domain CH53_1753 PF00005 ABC transporter CH53_1754 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1755 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1756 PF12849 PBP superfamily domain CH53_176 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH53_1766 PF01380 SIS domain CH53_1767 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_1767 PF12804 MobA-like NTP transferase domain CH53_1768 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH53_1768 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH53_1769 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH53_1769 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH53_177 PF00313 'Cold-shock' DNA-binding domain CH53_1770 PF00231 ATP synthase CH53_1771 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH53_1771 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH53_1771 PF00306 ATP synthase alpha/beta chain, C terminal domain CH53_1772 PF00213 ATP synthase delta (OSCP) subunit CH53_1773 PF00430 ATP synthase B/B' CF(0) CH53_1774 PF00137 ATP synthase subunit C CH53_1775 PF00119 ATP synthase A chain CH53_1776 PF03899 ATP synthase I chain CH53_1777 PF02527 rRNA small subunit methyltransferase G CH53_1778 PF13932 GidA associated domain CH53_1778 PF01134 Glucose inhibited division protein A CH53_1779 PF00258 Flavodoxin CH53_178 PF00005 ABC transporter CH53_178 PF12704 MacB-like periplasmic core domain CH53_178 PF02687 FtsX-like permease family CH53_1780 PF01037 Lrp/AsnC ligand binding domain CH53_1781 PF03590 Aspartate-ammonia ligase CH53_1782 PF05762 VWA domain containing CoxE-like protein CH53_1784 PF17868 AAA lid domain CH53_1784 PF07728 AAA domain (dynein-related subfamily) CH53_1784 PF12592 Protein of unknown function (DUF3763) CH53_1785 PF02705 K+ potassium transporter CH53_1786 PF05025 RbsD / FucU transport protein family CH53_1787 PF00005 ABC transporter CH53_1788 PF02653 Branched-chain amino acid transport system / permease component CH53_1789 PF13407 Periplasmic binding protein domain CH53_179 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_1790 PF00294 pfkB family carbohydrate kinase CH53_1791 PF07690 Major Facilitator Superfamily CH53_1792 PF00356 Bacterial regulatory proteins, lacI family CH53_1793 PF07729 FCD domain CH53_1793 PF00392 Bacterial regulatory proteins, gntR family CH53_1798 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH53_1799 PF12804 MobA-like NTP transferase domain CH53_18 PF13991 BssS protein family CH53_180 PF04393 Protein of unknown function (DUF535) CH53_1800 PF06288 Protein of unknown function (DUF1040) CH53_1801 PF01636 Phosphotransferase enzyme family CH53_1802 PF01323 DSBA-like thioredoxin domain CH53_1803 PF00476 DNA polymerase family A CH53_1803 PF01612 3'-5' exonuclease CH53_1803 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH53_1803 PF01367 5'-3' exonuclease, C-terminal SAM fold CH53_1804 PF01926 50S ribosome-binding GTPase CH53_1805 PF04220 Der GTPase activator (YihI) CH53_1806 PF04055 Radical SAM superfamily CH53_1806 PF06969 HemN C-terminal domain CH53_1807 PF00072 Response regulator receiver domain CH53_1807 PF00158 Sigma-54 interaction domain CH53_1807 PF02954 Bacterial regulatory protein, Fis family CH53_1808 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1808 PF00989 PAS fold CH53_1808 PF00512 His Kinase A (phospho-acceptor) domain CH53_1809 PF03951 Glutamine synthetase, beta-Grasp domain CH53_1809 PF00120 Glutamine synthetase, catalytic domain CH53_181 PF11398 Protein of unknown function (DUF2813) CH53_1811 PF13419 Haloacid dehalogenase-like hydrolase CH53_1812 PF03631 Virulence factor BrkB CH53_1813 PF02580 D-Tyr-tRNA(Tyr) deacylase CH53_1814 PF00583 Acetyltransferase (GNAT) family CH53_1814 PF09500 Putative thioesterase (yiiD_Cterm) CH53_1815 PF00072 Response regulator receiver domain CH53_1815 PF02954 Bacterial regulatory protein, Fis family CH53_1815 PF00158 Sigma-54 interaction domain CH53_1818 PF13693 Winged helix-turn-helix DNA-binding CH53_182 PF03956 Lysine exporter LysO CH53_1821 PF05170 AsmA family CH53_1822 PF00860 Permease family CH53_1823 PF03616 Sodium/glutamate symporter CH53_1824 PF00271 Helicase conserved C-terminal domain CH53_1824 PF00270 DEAD/DEAH box helicase CH53_1824 PF17191 RecG wedge domain CH53_1825 PF12105 SpoU, rRNA methylase, C-terminal CH53_1825 PF00588 SpoU rRNA Methylase family CH53_1826 PF02824 TGS domain CH53_1826 PF04607 Region found in RelA / SpoT proteins CH53_1826 PF13291 ACT domain CH53_1827 PF01192 RNA polymerase Rpb6 CH53_1828 PF00625 Guanylate kinase CH53_1829 PF03120 NAD-dependent DNA ligase OB-fold domain CH53_1829 PF01653 NAD-dependent DNA ligase adenylation domain CH53_183 PF03063 Prismane/CO dehydrogenase family CH53_1830 PF03458 UPF0126 domain CH53_1832 PF01773 Na+ dependent nucleoside transporter N-terminus CH53_1832 PF07670 Nucleoside recognition CH53_1832 PF07662 Na+ dependent nucleoside transporter C-terminus CH53_1833 PF00378 Enoyl-CoA hydratase/isomerase CH53_1834 PF13426 PAS domain CH53_1834 PF00990 Diguanylate cyclase, GGDEF domain CH53_1834 PF00563 EAL domain CH53_1838 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CH53_184 PF00175 Oxidoreductase NAD-binding domain CH53_184 PF00970 Oxidoreductase FAD-binding domain CH53_184 PF00111 2Fe-2S iron-sulfur cluster binding domain CH53_1841 PF04606 Ogr/Delta-like zinc finger CH53_1845 PF17345 Family of unknown function (DUF5375) CH53_185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_185 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_1851 PF08340 Domain of unknown function (DUF1732) CH53_1851 PF03755 YicC-like family, N-terminal region CH53_1852 PF03725 3' exoribonuclease family, domain 2 CH53_1852 PF01138 3' exoribonuclease family, domain 1 CH53_1853 PF00156 Phosphoribosyl transferase domain CH53_1854 PF00440 Bacterial regulatory proteins, tetR family CH53_1855 PF00692 dUTPase CH53_1856 PF02441 Flavoprotein CH53_1856 PF04127 DNA / pantothenate metabolism flavoprotein CH53_1857 PF04002 RadC-like JAB domain CH53_1858 PF00830 Ribosomal L28 family CH53_1859 PF00471 Ribosomal protein L33 CH53_1860 PF06827 Zinc finger found in FPG and IleRS CH53_1860 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH53_1860 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH53_1861 PF01467 Cytidylyltransferase-like CH53_1862 PF00535 Glycosyl transferase family 2 CH53_1863 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH53_1865 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH53_1866 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH53_1867 PF01370 NAD dependent epimerase/dehydratase family CH53_1868 PF00155 Aminotransferase class I and II CH53_1869 PF00107 Zinc-binding dehydrogenase CH53_1869 PF08240 Alcohol dehydrogenase GroES-like domain CH53_187 PF01212 Beta-eliminating lyase CH53_1870 PF04748 Divergent polysaccharide deacetylase CH53_1871 PF01551 Peptidase family M23 CH53_1872 PF01676 Metalloenzyme superfamily CH53_1872 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH53_1873 PF00581 Rhodanese-like domain CH53_1874 PF00462 Glutaredoxin CH53_1875 PF02556 Preprotein translocase subunit SecB CH53_1876 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH53_1876 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH53_1877 PF06426 Serine acetyltransferase, N-terminal CH53_1877 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_1878 PF00588 SpoU rRNA Methylase family CH53_1879 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH53_1879 PF02805 Metal binding domain of Ada CH53_1879 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH53_1879 PF12833 Helix-turn-helix domain CH53_188 PF13460 NAD(P)H-binding CH53_188 PF11066 Protein of unknown function (DUF2867) CH53_1880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_1880 PF16527 Two-component sensor protein CpxA, periplasmic domain CH53_1880 PF00672 HAMP domain CH53_1880 PF00512 His Kinase A (phospho-acceptor) domain CH53_1881 PF00072 Response regulator receiver domain CH53_1881 PF00486 Transcriptional regulatory protein, C terminal CH53_1882 PF07813 LTXXQ motif family protein CH53_1884 PF05973 Phage derived protein Gp49-like (DUF891) CH53_1886 PF01545 Cation efflux family CH53_1886 PF16916 Dimerisation domain of Zinc Transporter CH53_1887 PF00365 Phosphofructokinase CH53_1889 PF00121 Triosephosphate isomerase CH53_189 PF01370 NAD dependent epimerase/dehydratase family CH53_1890 PF07305 Protein of unknown function (DUF1454) CH53_1891 PF05656 Protein of unknown function (DUF805) CH53_1892 PF00175 Oxidoreductase NAD-binding domain CH53_1892 PF00970 Oxidoreductase FAD-binding domain CH53_1893 PF07690 Major Facilitator Superfamily CH53_1894 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH53_1895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_1895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_1896 PF00230 Major intrinsic protein CH53_1897 PF06005 Cell division protein ZapB CH53_1898 PF03737 Aldolase/RraA CH53_1899 PF01040 UbiA prenyltransferase family CH53_19 PF01266 FAD dependent oxidoreductase CH53_190 PF12883 Protein of unknown function (DUF3828) CH53_1900 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_1900 PF07724 AAA domain (Cdc48 subfamily) CH53_1900 PF00004 ATPase family associated with various cellular activities (AAA) CH53_1901 PF00227 Proteasome subunit CH53_1902 PF05036 Sporulation related domain CH53_1903 PF00356 Bacterial regulatory proteins, lacI family CH53_1904 PF17764 3′ DNA-binding domain (3′BD) CH53_1904 PF00271 Helicase conserved C-terminal domain CH53_1904 PF00270 DEAD/DEAH box helicase CH53_1904 PF18074 Primosomal protein N C-terminal domain CH53_1904 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH53_1905 PF01197 Ribosomal protein L31 CH53_1906 PF01340 Met Apo-repressor, MetJ CH53_1907 PF01053 Cys/Met metabolism PLP-dependent enzyme CH53_1908 PF00696 Amino acid kinase family CH53_1908 PF00742 Homoserine dehydrogenase CH53_1908 PF03447 Homoserine dehydrogenase, NAD binding domain CH53_1909 PF02219 Methylenetetrahydrofolate reductase CH53_191 PF00005 ABC transporter CH53_1910 PF00311 Phosphoenolpyruvate carboxylase CH53_1912 PF01546 Peptidase family M20/M25/M40 CH53_1912 PF07687 Peptidase dimerisation domain CH53_1913 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH53_1913 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH53_1914 PF00696 Amino acid kinase family CH53_1915 PF00206 Lyase CH53_1915 PF14698 Argininosuccinate lyase C-terminal CH53_192 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_1921 PF00664 ABC transporter transmembrane region CH53_1921 PF00005 ABC transporter CH53_1922 PF00529 HlyD membrane-fusion protein of T1SS CH53_1926 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH53_1926 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1927 PF00462 Glutaredoxin CH53_1927 PF08534 Redoxin CH53_1928 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_1928 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH53_1929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1929 PF03466 LysR substrate binding domain CH53_193 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1930 PF00440 Bacterial regulatory proteins, tetR family CH53_1931 PF07226 Protein of unknown function (DUF1422) CH53_1932 PF05958 tRNA (Uracil-5-)-methyltransferase CH53_1933 PF00593 TonB dependent receptor CH53_1933 PF07715 TonB-dependent Receptor Plug Domain CH53_1934 PF01177 Asp/Glu/Hydantoin racemase CH53_194 PF00528 Binding-protein-dependent transport system inner membrane component CH53_1943 PF13407 Periplasmic binding protein domain CH53_1944 PF00005 ABC transporter CH53_1945 PF02653 Branched-chain amino acid transport system / permease component CH53_1946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1946 PF03466 LysR substrate binding domain CH53_1947 PF02653 Branched-chain amino acid transport system / permease component CH53_1948 PF04219 Protein of unknown function, DUF CH53_1949 PF01078 Magnesium chelatase, subunit ChlI CH53_1949 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH53_195 PF09339 IclR helix-turn-helix domain CH53_195 PF01614 Bacterial transcriptional regulator CH53_1950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_1950 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_1950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_1952 PF01063 Amino-transferase class IV CH53_1953 PF00920 Dehydratase family CH53_1954 PF00585 C-terminal regulatory domain of Threonine dehydratase CH53_1954 PF00291 Pyridoxal-phosphate dependent enzyme CH53_1956 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_1956 PF03466 LysR substrate binding domain CH53_1957 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH53_1957 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH53_1959 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_1959 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_196 PF00171 Aldehyde dehydrogenase family CH53_1961 PF00577 Outer membrane usher protein CH53_1961 PF13954 PapC N-terminal domain CH53_1961 PF13953 PapC C-terminal domain CH53_1962 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_1962 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_1966 PF00580 UvrD/REP helicase N-terminal domain CH53_1966 PF13361 UvrD-like helicase C-terminal domain CH53_1967 PF00295 Glycosyl hydrolases family 28 CH53_1968 PF02541 Ppx/GppA phosphatase family CH53_1969 PF00270 DEAD/DEAH box helicase CH53_1969 PF00271 Helicase conserved C-terminal domain CH53_197 PF00465 Iron-containing alcohol dehydrogenase CH53_1970 PF00085 Thioredoxin CH53_1971 PF07497 Rho termination factor, RNA-binding domain CH53_1971 PF07498 Rho termination factor, N-terminal domain CH53_1971 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH53_1972 PF00953 Glycosyl transferase family 4 CH53_1973 PF02706 Chain length determinant protein CH53_1974 PF02350 UDP-N-acetylglucosamine 2-epimerase CH53_1975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH53_1975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH53_1975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH53_1976 PF16363 GDP-mannose 4,6 dehydratase CH53_1977 PF00483 Nucleotidyl transferase CH53_1979 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH53_198 PF00753 Metallo-beta-lactamase superfamily CH53_1980 PF01943 Polysaccharide biosynthesis protein CH53_1981 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH53_1982 PF06899 WzyE protein, O-antigen assembly polymerase CH53_1983 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH53_1984 PF00324 Amino acid permease CH53_1989 PF07719 Tetratricopeptide repeat CH53_1989 PF07219 HemY protein N-terminus CH53_199 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_1990 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH53_1991 PF02602 Uroporphyrinogen-III synthase HemD CH53_1992 PF03900 Porphobilinogen deaminase, C-terminal domain CH53_1992 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH53_1993 PF12633 Adenylate cyclase NT domain CH53_1993 PF01295 Adenylate cyclase, class-I CH53_1994 PF01491 Frataxin-like domain CH53_1995 PF13627 Prokaryotic lipoprotein-attachment site CH53_1996 PF01678 Diaminopimelate epimerase CH53_1997 PF04340 Protein of unknown function, DUF484 CH53_1998 PF00589 Phage integrase family CH53_1998 PF02899 Phage integrase, N-terminal SAM-like domain CH53_1999 PF13419 Haloacid dehalogenase-like hydrolase CH53_2 PF02618 YceG-like family CH53_20 PF00196 Bacterial regulatory proteins, luxR family CH53_200 PF05958 tRNA (Uracil-5-)-methyltransferase CH53_2000 PF13361 UvrD-like helicase C-terminal domain CH53_2000 PF00580 UvrD/REP helicase N-terminal domain CH53_2003 PF09370 Phosphoenolpyruvate hydrolase-like CH53_2005 PF01544 CorA-like Mg2+ transporter protein CH53_2006 PF00892 EamA-like transporter family CH53_2007 PF03061 Thioesterase superfamily CH53_2008 PF02253 Phospholipase A1 CH53_2009 PF00271 Helicase conserved C-terminal domain CH53_2009 PF09382 RQC domain CH53_2009 PF16124 RecQ zinc-binding CH53_2009 PF00570 HRDC domain CH53_2009 PF00270 DEAD/DEAH box helicase CH53_201 PF10767 Protein of unknown function (DUF2593) CH53_2010 PF01810 LysE type translocator CH53_2011 PF01810 LysE type translocator CH53_2012 PF12146 Serine aminopeptidase, S33 CH53_2014 PF03009 Glycerophosphoryl diester phosphodiesterase family CH53_2015 PF07690 Major Facilitator Superfamily CH53_2016 PF01266 FAD dependent oxidoreductase CH53_2016 PF04324 BFD-like [2Fe-2S] binding domain CH53_2017 PF00890 FAD binding domain CH53_2018 PF02754 Cysteine-rich domain CH53_2018 PF13183 4Fe-4S dicluster domain CH53_2019 PF08786 DcrB CH53_202 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2020 PF02592 Putative vitamin uptake transporter CH53_2021 PF01206 Sulfurtransferase TusA CH53_2022 PF00403 Heavy-metal-associated domain CH53_2023 PF07947 YhhN family CH53_2026 PF06611 Protein of unknown function (DUF1145) CH53_2028 PF00448 SRP54-type protein, GTPase domain CH53_2028 PF02881 SRP54-type protein, helical bundle domain CH53_2029 PF00005 ABC transporter CH53_203 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2030 PF02687 FtsX-like permease family CH53_2030 PF18075 FtsX extracellular domain CH53_2031 PF00140 Sigma-70 factor, region 1.2 CH53_2031 PF04545 Sigma-70, region 4 CH53_2031 PF04542 Sigma-70 region 2 CH53_2032 PF12568 Acetyltransferase (GNAT) domain, PanZ CH53_2033 PF13458 Periplasmic binding protein CH53_2034 PF02653 Branched-chain amino acid transport system / permease component CH53_2035 PF11862 Domain of unknown function (DUF3382) CH53_2035 PF02653 Branched-chain amino acid transport system / permease component CH53_2036 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH53_2036 PF00005 ABC transporter CH53_2037 PF00005 ABC transporter CH53_204 PF00005 ABC transporter CH53_204 PF08402 TOBE domain CH53_2044 PF13416 Bacterial extracellular solute-binding protein CH53_2045 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2046 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2047 PF17912 MalK OB fold domain CH53_2047 PF00005 ABC transporter CH53_2048 PF03009 Glycerophosphoryl diester phosphodiesterase family CH53_2049 PF03547 Membrane transport protein CH53_205 PF13416 Bacterial extracellular solute-binding protein CH53_2050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2050 PF03466 LysR substrate binding domain CH53_2051 PF00892 EamA-like transporter family CH53_2052 PF08267 Cobalamin-independent synthase, N-terminal domain CH53_2052 PF01717 Cobalamin-independent synthase, Catalytic domain CH53_2053 PF01738 Dienelactone hydrolase family CH53_2054 PF01048 Phosphorylase superfamily CH53_2056 PF13722 5TM C-terminal transporter carbon starvation CstA CH53_2056 PF02554 Carbon starvation protein CstA CH53_2057 PF09335 SNARE associated Golgi protein CH53_2058 PF02646 RmuC family CH53_2059 PF01209 ubiE/COQ5 methyltransferase family CH53_206 PF10722 Putative bacterial sensory transduction regulator CH53_2060 PF02036 SCP-2 sterol transfer family CH53_2061 PF03109 ABC1 family CH53_2062 PF02416 mttA/Hcf106 family CH53_2064 PF00902 Sec-independent protein translocase protein (TatC) CH53_2065 PF01026 TatD related DNase CH53_2066 PF00490 Delta-aminolevulinic acid dehydratase CH53_2067 PF02357 Transcription termination factor nusG CH53_2068 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH53_2069 PF00970 Oxidoreductase FAD-binding domain CH53_2069 PF00175 Oxidoreductase NAD-binding domain CH53_207 PF07214 Protein of unknown function (DUF1418) CH53_2070 PF02803 Thiolase, C-terminal domain CH53_2070 PF00108 Thiolase, N-terminal domain CH53_2071 PF00378 Enoyl-CoA hydratase/isomerase CH53_2071 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH53_2071 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH53_2072 PF00557 Metallopeptidase family M24 CH53_2073 PF01205 Uncharacterized protein family UPF0029 CH53_2073 PF09186 Domain of unknown function (DUF1949) CH53_2074 PF02386 Cation transport protein CH53_2075 PF12724 Flavodoxin domain CH53_208 PF00462 Glutaredoxin CH53_2080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH53_2080 PF01565 FAD binding domain CH53_2081 PF08279 HTH domain CH53_2081 PF02237 Biotin protein ligase C terminal domain CH53_2081 PF03099 Biotin/lipoate A/B protein ligase family CH53_2082 PF00485 Phosphoribulokinase / Uridine kinase family CH53_2083 PF13673 Acetyltransferase (GNAT) domain CH53_2088 PF03143 Elongation factor Tu C-terminal domain CH53_2088 PF00009 Elongation factor Tu GTP binding domain CH53_2088 PF03144 Elongation factor Tu domain 2 CH53_2089 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH53_209 PF02080 TrkA-C domain CH53_209 PF06826 Predicted Permease Membrane Region CH53_2090 PF02357 Transcription termination factor nusG CH53_2090 PF00467 KOW motif CH53_2091 PF00298 Ribosomal protein L11, RNA binding domain CH53_2091 PF03946 Ribosomal protein L11, N-terminal domain CH53_2092 PF00687 Ribosomal protein L1p/L10e family CH53_2093 PF00466 Ribosomal protein L10 CH53_2094 PF00542 Ribosomal protein L7/L12 C-terminal domain CH53_2094 PF16320 Ribosomal protein L7/L12 dimerisation domain CH53_2095 PF10385 RNA polymerase beta subunit external 1 domain CH53_2095 PF04565 RNA polymerase Rpb2, domain 3 CH53_2095 PF04560 RNA polymerase Rpb2, domain 7 CH53_2095 PF00562 RNA polymerase Rpb2, domain 6 CH53_2095 PF04563 RNA polymerase beta subunit CH53_2095 PF04561 RNA polymerase Rpb2, domain 2 CH53_2096 PF05000 RNA polymerase Rpb1, domain 4 CH53_2096 PF04983 RNA polymerase Rpb1, domain 3 CH53_2096 PF00623 RNA polymerase Rpb1, domain 2 CH53_2096 PF04997 RNA polymerase Rpb1, domain 1 CH53_2096 PF04998 RNA polymerase Rpb1, domain 5 CH53_2097 PF04055 Radical SAM superfamily CH53_2097 PF06968 Biotin and Thiamin Synthesis associated domain CH53_2098 PF05690 Thiazole biosynthesis protein ThiG CH53_2099 PF02597 ThiS family CH53_2100 PF00899 ThiF family CH53_2101 PF02581 Thiamine monophosphate synthase CH53_2102 PF13667 ThiC-associated domain CH53_2102 PF01964 Radical SAM ThiC family CH53_2103 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH53_2104 PF09297 NADH pyrophosphatase zinc ribbon domain CH53_2104 PF00293 NUDIX domain CH53_2105 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH53_2106 PF04493 Endonuclease V CH53_2107 PF04222 Protein of unknown function (DUF416) CH53_2108 PF00216 Bacterial DNA-binding protein CH53_2109 PF07356 Protein of unknown function (DUF1481) CH53_211 PF01569 PAP2 superfamily CH53_2110 PF02843 Phosphoribosylglycinamide synthetase, C domain CH53_2110 PF02844 Phosphoribosylglycinamide synthetase, N domain CH53_2110 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH53_2111 PF01808 AICARFT/IMPCHase bienzyme CH53_2111 PF02142 MGS-like domain CH53_212 PF01791 DeoC/LacD family aldolase CH53_2120 PF04204 Homoserine O-succinyltransferase CH53_2121 PF01274 Malate synthase CH53_2122 PF00463 Isocitrate lyase family CH53_2123 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH53_2124 PF00108 Thiolase, N-terminal domain CH53_2124 PF02803 Thiolase, C-terminal domain CH53_2125 PF02667 Short chain fatty acid transporter CH53_2126 PF01144 Coenzyme A transferase CH53_2127 PF01144 Coenzyme A transferase CH53_2128 PF02954 Bacterial regulatory protein, Fis family CH53_2128 PF00072 Response regulator receiver domain CH53_2128 PF00158 Sigma-54 interaction domain CH53_2129 PF00512 His Kinase A (phospho-acceptor) domain CH53_2129 PF00989 PAS fold CH53_2129 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_213 PF00455 DeoR C terminal sensor domain CH53_213 PF08220 DeoR-like helix-turn-helix domain CH53_2130 PF01614 Bacterial transcriptional regulator CH53_2130 PF09339 IclR helix-turn-helix domain CH53_2131 PF00809 Pterin binding enzyme CH53_2131 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH53_2131 PF02607 B12 binding domain CH53_2131 PF02574 Homocysteine S-methyltransferase CH53_2131 PF02310 B12 binding domain CH53_2136 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH53_2136 PF17287 POTRA domain CH53_2136 PF08479 POTRA domain, ShlB-type CH53_2137 PF01758 Sodium Bile acid symporter family CH53_2138 PF00696 Amino acid kinase family CH53_2138 PF01842 ACT domain CH53_2139 PF00342 Phosphoglucose isomerase CH53_2140 PF06146 Phosphate-starvation-inducible E CH53_2141 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2142 PF14785 Maltose transport system permease protein MalF P2 domain CH53_2142 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2143 PF01547 Bacterial extracellular solute-binding protein CH53_2144 PF00005 ABC transporter CH53_2144 PF17912 MalK OB fold domain CH53_2145 PF02264 LamB porin CH53_2146 PF07148 Maltose operon periplasmic protein precursor (MalM) CH53_2147 PF04345 Chorismate lyase CH53_2148 PF01040 UbiA prenyltransferase family CH53_2149 PF01553 Acyltransferase CH53_215 PF03313 Serine dehydratase alpha chain CH53_215 PF03315 Serine dehydratase beta chain CH53_2150 PF01219 Prokaryotic diacylglycerol kinase CH53_2151 PF00717 Peptidase S24-like CH53_2151 PF01726 LexA DNA binding domain CH53_2152 PF05532 CsbD-like CH53_2153 PF01475 Ferric uptake regulator family CH53_2154 PF01207 Dihydrouridine synthase (Dus) CH53_2155 PF09583 Phage shock protein G (Phageshock_PspG) CH53_2156 PF08240 Alcohol dehydrogenase GroES-like domain CH53_2156 PF00107 Zinc-binding dehydrogenase CH53_2157 PF03796 DnaB-like helicase C terminal domain CH53_2157 PF00772 DnaB-like helicase N terminal domain CH53_2158 PF01168 Alanine racemase, N-terminal domain CH53_2158 PF00842 Alanine racemase, C-terminal domain CH53_2159 PF00155 Aminotransferase class I and II CH53_216 PF00768 D-alanyl-D-alanine carboxypeptidase CH53_216 PF07943 Penicillin-binding protein 5, C-terminal domain CH53_2160 PF04237 YjbR CH53_2161 PF00005 ABC transporter CH53_2161 PF17760 UvrA interaction domain CH53_2161 PF17755 UvrA DNA-binding domain CH53_2162 PF00436 Single-strand binding protein family CH53_2163 PF13657 HipA N-terminal domain CH53_2163 PF07804 HipA-like C-terminal domain CH53_2166 PF00860 Permease family CH53_2167 PF00999 Sodium/hydrogen exchanger family CH53_2168 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2168 PF03466 LysR substrate binding domain CH53_2169 PF03788 LrgA family CH53_217 PF00571 CBS domain CH53_217 PF00291 Pyridoxal-phosphate dependent enzyme CH53_2171 PF00005 ABC transporter CH53_2172 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2173 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2174 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_2176 PF03279 Bacterial lipid A biosynthesis acyltransferase CH53_2178 PF00005 ABC transporter CH53_2179 PF02653 Branched-chain amino acid transport system / permease component CH53_218 PF01053 Cys/Met metabolism PLP-dependent enzyme CH53_2180 PF02653 Branched-chain amino acid transport system / permease component CH53_2181 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_2181 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_2182 PF00571 CBS domain CH53_2182 PF01380 SIS domain CH53_2183 PF00939 Sodium:sulfate symporter transmembrane region CH53_2184 PF00313 'Cold-shock' DNA-binding domain CH53_2185 PF00313 'Cold-shock' DNA-binding domain CH53_2186 PF05433 Glycine zipper 2TM domain CH53_2188 PF02954 Bacterial regulatory protein, Fis family CH53_2189 PF01207 Dihydrouridine synthase (Dus) CH53_219 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2191 PF00474 Sodium:solute symporter family CH53_2192 PF06196 Protein of unknown function (DUF997) CH53_2193 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH53_2193 PF00289 Biotin carboxylase, N-terminal domain CH53_2193 PF02785 Biotin carboxylase C-terminal domain CH53_2194 PF00364 Biotin-requiring enzyme CH53_2195 PF01220 Dehydroquinase class II CH53_2196 PF01794 Ferric reductase like transmembrane component CH53_2197 PF00174 Oxidoreductase molybdopterin binding domain CH53_2198 PF00107 Zinc-binding dehydrogenase CH53_2198 PF08240 Alcohol dehydrogenase GroES-like domain CH53_2199 PF17157 Gammaproteobacterial periplasmic sensor domain CH53_2199 PF00990 Diguanylate cyclase, GGDEF domain CH53_2199 PF00563 EAL domain CH53_22 PF01594 AI-2E family transporter CH53_220 PF09383 NIL domain CH53_220 PF00005 ABC transporter CH53_2201 PF04085 rod shape-determining protein MreC CH53_2202 PF04093 rod shape-determining protein MreD CH53_2203 PF02545 Maf-like protein CH53_2204 PF10150 Ribonuclease E/G family CH53_2204 PF00575 S1 RNA binding domain CH53_2205 PF13116 Protein of unknown function CH53_2205 PF13502 AsmA-like C-terminal region CH53_2206 PF00795 Carbon-nitrogen hydrolase CH53_2207 PF01523 Putative modulator of DNA gyrase CH53_2208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2208 PF03466 LysR substrate binding domain CH53_2209 PF07869 Protein of unknown function (DUF1656) CH53_221 PF03180 NLPA lipoprotein CH53_2210 PF13533 Biotin-lipoyl like CH53_2211 PF04632 Fusaric acid resistance protein family CH53_2212 PF00171 Aldehyde dehydrogenase family CH53_2214 PF01337 Barstar (barnase inhibitor) CH53_2215 PF04751 Protein of unknown function (DUF615) CH53_2216 PF01523 Putative modulator of DNA gyrase CH53_2217 PF07361 Cytochrome b562 CH53_2218 PF01272 Transcription elongation factor, GreA/GreB, C-term CH53_2218 PF14760 Rnk N-terminus CH53_2224 PF01979 Amidohydrolase family CH53_2225 PF03841 L-seryl-tRNA selenium transferase CH53_2226 PF07071 KDGP aldolase CH53_2227 PF08279 HTH domain CH53_2227 PF05043 Mga helix-turn-helix domain CH53_2227 PF00874 PRD domain CH53_2227 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_2228 PF01381 Helix-turn-helix CH53_2229 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CH53_2231 PF00690 Cation transporter/ATPase, N-terminus CH53_2231 PF00689 Cation transporting ATPase, C-terminus CH53_2232 PF00356 Bacterial regulatory proteins, lacI family CH53_2233 PF00367 phosphotransferase system, EIIB CH53_2233 PF02378 Phosphotransferase system, EIIC CH53_2234 PF11941 Domain of unknown function (DUF3459) CH53_2234 PF00128 Alpha amylase, catalytic domain CH53_2235 PF01042 Endoribonuclease L-PSP CH53_2236 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH53_2236 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH53_2237 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH53_2237 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH53_2239 PF01370 NAD dependent epimerase/dehydratase family CH53_2240 PF07690 Major Facilitator Superfamily CH53_2241 PF00381 PTS HPr component phosphorylation site CH53_2242 PF03668 P-loop ATPase protein family CH53_2243 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_2244 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH53_2245 PF04963 Sigma-54 factor, core binding domain CH53_2245 PF04552 Sigma-54, DNA binding domain CH53_2245 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH53_2246 PF00005 ABC transporter CH53_2246 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH53_2247 PF03968 OstA-like protein CH53_2248 PF06835 Lipopolysaccharide-assembly, LptC-related CH53_225 PF13417 Glutathione S-transferase, N-terminal domain CH53_225 PF00043 Glutathione S-transferase, C-terminal domain CH53_2250 PF00571 CBS domain CH53_2250 PF01380 SIS domain CH53_2251 PF01699 Sodium/calcium exchanger protein CH53_2252 PF00005 ABC transporter CH53_2253 PF02405 Permease MlaE CH53_2254 PF02470 MlaD protein CH53_2255 PF05494 MlaC protein CH53_2256 PF13466 STAS domain CH53_2257 PF01722 BolA-like protein CH53_2258 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH53_2259 PF13180 PDZ domain CH53_226 PF07715 TonB-dependent Receptor Plug Domain CH53_226 PF00593 TonB dependent receptor CH53_2260 PF13180 PDZ domain CH53_2260 PF00595 PDZ domain CH53_2261 PF06295 Protein of unknown function (DUF1043) CH53_2262 PF03969 AFG1-like ATPase CH53_2263 PF00572 Ribosomal protein L13 CH53_2264 PF00380 Ribosomal protein S9/S16 CH53_2265 PF02798 Glutathione S-transferase, N-terminal domain CH53_2265 PF00043 Glutathione S-transferase, C-terminal domain CH53_2266 PF04386 Stringent starvation protein B CH53_2268 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH53_2268 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_2269 PF01493 GXGXG motif CH53_2269 PF01645 Conserved region in glutamate synthase CH53_2269 PF04898 Glutamate synthase central domain CH53_2269 PF00310 Glutamine amidotransferases class-II CH53_227 PF00324 Amino acid permease CH53_2270 PF16199 Radical_SAM C-terminal domain CH53_2270 PF04055 Radical SAM superfamily CH53_2271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2271 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH53_2271 PF01627 Hpt domain CH53_2271 PF00512 His Kinase A (phospho-acceptor) domain CH53_2271 PF00989 PAS fold CH53_2271 PF00072 Response regulator receiver domain CH53_2273 PF00912 Transglycosylase CH53_2274 PF04972 BON domain CH53_2275 PF13580 SIS domain CH53_2276 PF02021 Uncharacterised protein family UPF0102 CH53_2277 PF04348 LppC putative lipoprotein CH53_2279 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_228 PF03466 LysR substrate binding domain CH53_228 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2283 PF03466 LysR substrate binding domain CH53_2283 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2284 PF00107 Zinc-binding dehydrogenase CH53_2284 PF08240 Alcohol dehydrogenase GroES-like domain CH53_2285 PF02678 Pirin CH53_2285 PF17954 Quercetinase C-terminal cupin domain CH53_2286 PF03466 LysR substrate binding domain CH53_2286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2287 PF13409 Glutathione S-transferase, N-terminal domain CH53_2288 PF07681 DoxX CH53_2289 PF13997 YqjK-like protein CH53_2290 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH53_2291 PF05957 Bacterial protein of unknown function (DUF883) CH53_2293 PF13721 SecD export protein N-terminal TM region CH53_2294 PF09335 SNARE associated Golgi protein CH53_2296 PF07729 FCD domain CH53_2296 PF00392 Bacterial regulatory proteins, gntR family CH53_2298 PF07690 Major Facilitator Superfamily CH53_2299 PF02614 Glucuronate isomerase CH53_230 PF03601 Conserved hypothetical protein 698 CH53_2300 PF01232 Mannitol dehydrogenase Rossmann domain CH53_2300 PF08125 Mannitol dehydrogenase C-terminal domain CH53_2301 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH53_2301 PF08666 SAF domain CH53_2302 PF10688 Bacterial inner membrane protein CH53_2303 PF00375 Sodium:dicarboxylate symporter family CH53_2304 PF03741 Integral membrane protein TerC family CH53_2305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH53_2306 PF01863 Protein of unknown function DUF45 CH53_2307 PF03212 Pertactin CH53_2307 PF03797 Autotransporter beta-domain CH53_231 PF01261 Xylose isomerase-like TIM barrel CH53_2310 PF05175 Methyltransferase small domain CH53_2311 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH53_2311 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_2313 PF08279 HTH domain CH53_2313 PF13280 WYL domain CH53_2314 PF00892 EamA-like transporter family CH53_2315 PF03729 Short repeat of unknown function (DUF308) CH53_2316 PF07690 Major Facilitator Superfamily CH53_2317 PF01638 HxlR-like helix-turn-helix CH53_232 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH53_232 PF02378 Phosphotransferase system, EIIC CH53_2321 PF03797 Autotransporter beta-domain CH53_2322 PF02369 Bacterial Ig-like domain (group 1) CH53_2322 PF11924 Inverse autotransporter, beta-domain CH53_2322 PF07979 Intimin C-type lectin domain CH53_2322 PF09134 Invasin, domain 3 CH53_2324 PF04546 Sigma-70, non-essential region CH53_2324 PF04539 Sigma-70 region 3 CH53_2324 PF04545 Sigma-70, region 4 CH53_2324 PF00140 Sigma-70 factor, region 1.2 CH53_2324 PF03979 Sigma-70 factor, region 1.1 CH53_2324 PF04542 Sigma-70 region 2 CH53_2325 PF10410 DnaB-helicase binding domain of primase CH53_2325 PF08275 DNA primase catalytic core, N-terminal domain CH53_2325 PF01807 CHC2 zinc finger CH53_2325 PF08278 DNA primase DnaG DnaB-binding CH53_2326 PF01165 Ribosomal protein S21 CH53_2328 PF00814 Glycoprotease family CH53_2329 PF02660 Glycerol-3-phosphate acyltransferase CH53_233 PF00294 pfkB family carbohydrate kinase CH53_2330 PF02152 Dihydroneopterin aldolase CH53_2331 PF02673 Bacitracin resistance protein BacA CH53_2332 PF01966 HD domain CH53_2332 PF01743 Poly A polymerase head domain CH53_2332 PF12627 Probable RNA and SrmB- binding site of polymerase A CH53_2333 PF08239 Bacterial SH3 domain CH53_2334 PF01928 CYTH domain CH53_2335 PF03710 Glutamate-ammonia ligase adenylyltransferase CH53_2335 PF08335 GlnD PII-uridylyltransferase CH53_2336 PF01467 Cytidylyltransferase-like CH53_2336 PF00294 pfkB family carbohydrate kinase CH53_2337 PF13520 Amino acid permease CH53_2338 PF04380 Membrane fusogenic activity CH53_2339 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH53_234 PF00381 PTS HPr component phosphorylation site CH53_234 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_2340 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH53_2341 PF03738 Glutathionylspermidine synthase preATP-grasp CH53_2342 PF06693 Protein of unknown function (DUF1190) CH53_2343 PF02321 Outer membrane efflux protein CH53_2344 PF00293 NUDIX domain CH53_2345 PF06853 Protein of unknown function (DUF1249) CH53_2346 PF00149 Calcineurin-like phosphoesterase CH53_2347 PF05728 Uncharacterised protein family (UPF0227) CH53_2348 PF00204 DNA gyrase B CH53_2348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2348 PF00986 DNA gyrase B subunit, carboxyl terminus CH53_2348 PF01751 Toprim domain CH53_235 PF13344 Haloacid dehalogenase-like hydrolase CH53_235 PF00293 NUDIX domain CH53_2350 PF03992 Antibiotic biosynthesis monooxygenase CH53_2351 PF02525 Flavodoxin-like fold CH53_2352 PF00072 Response regulator receiver domain CH53_2352 PF00486 Transcriptional regulatory protein, C terminal CH53_2353 PF00672 HAMP domain CH53_2353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2353 PF00512 His Kinase A (phospho-acceptor) domain CH53_2354 PF01547 Bacterial extracellular solute-binding protein CH53_2355 PF00248 Aldo/keto reductase family CH53_2356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2356 PF03466 LysR substrate binding domain CH53_2358 PF03613 PTS system mannose/fructose/sorbose family IID component CH53_2359 PF03609 PTS system sorbose-specific iic component CH53_236 PF03264 NapC/NirT cytochrome c family, N-terminal region CH53_2360 PF03830 PTS system sorbose subfamily IIB component CH53_2361 PF03989 DNA gyrase C-terminal domain, beta-propeller CH53_2361 PF00521 DNA gyrase/topoisomerase IV, subunit A CH53_2362 PF01553 Acyltransferase CH53_2363 PF07731 Multicopper oxidase CH53_2363 PF07732 Multicopper oxidase CH53_2366 PF08497 Radical SAM N-terminal CH53_2366 PF04055 Radical SAM superfamily CH53_2366 PF11842 Domain of unknown function (DUF3362) CH53_2367 PF00248 Aldo/keto reductase family CH53_2368 PF00465 Iron-containing alcohol dehydrogenase CH53_2369 PF12833 Helix-turn-helix domain CH53_2369 PF06719 AraC-type transcriptional regulator N-terminus CH53_237 PF00384 Molybdopterin oxidoreductase CH53_237 PF01568 Molydopterin dinucleotide binding domain CH53_237 PF18364 Molybdopterin oxidoreductase N-terminal domain CH53_2370 PF09335 SNARE associated Golgi protein CH53_2371 PF01053 Cys/Met metabolism PLP-dependent enzyme CH53_2372 PF01618 MotA/TolQ/ExbB proton channel family CH53_2373 PF02472 Biopolymer transport protein ExbD/TolR CH53_238 PF00455 DeoR C terminal sensor domain CH53_238 PF08220 DeoR-like helix-turn-helix domain CH53_2381 PF00437 Type II/IV secretion system protein CH53_2384 PF13629 Pilus formation protein N terminal region CH53_2384 PF04972 BON domain CH53_2384 PF00263 Bacterial type II and III secretion system protein CH53_2389 PF13532 2OG-Fe(II) oxygenase superfamily CH53_239 PF08013 Tagatose 6 phosphate kinase CH53_2390 PF00873 AcrB/AcrD/AcrF family CH53_2391 PF00529 HlyD membrane-fusion protein of T1SS CH53_2391 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_2395 PF11806 Domain of unknown function (DUF3327) CH53_2395 PF00756 Putative esterase CH53_2396 PF00005 ABC transporter CH53_2397 PF01032 FecCD transport family CH53_2398 PF01032 FecCD transport family CH53_2399 PF01497 Periplasmic binding protein CH53_240 PF03830 PTS system sorbose subfamily IIB component CH53_2400 PF02203 Tar ligand binding domain homologue CH53_2400 PF00672 HAMP domain CH53_2400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_2402 PF00771 FHIPEP family CH53_2403 PF00691 OmpA family CH53_2404 PF05433 Glycine zipper 2TM domain CH53_2405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH53_2405 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH53_2406 PF13247 4Fe-4S dicluster domain CH53_2407 PF03916 Polysulphide reductase, NrfD CH53_2408 PF00374 Nickel-dependent hydrogenase CH53_2409 PF01750 Hydrogenase maturation protease CH53_241 PF03609 PTS system sorbose-specific iic component CH53_2410 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH53_2411 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH53_2412 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH53_2413 PF01455 HupF/HypC family CH53_2414 PF01924 Hydrogenase formation hypA family CH53_2415 PF02769 AIR synthase related protein, C-terminal domain CH53_2415 PF00586 AIR synthase related protein, N-terminal domain CH53_2416 PF07503 HypF finger CH53_2416 PF01300 Telomere recombination CH53_2416 PF17788 HypF Kae1-like domain CH53_2416 PF00708 Acylphosphatase CH53_2417 PF02110 Hydroxyethylthiazole kinase family CH53_2418 PF08448 PAS fold CH53_2418 PF00990 Diguanylate cyclase, GGDEF domain CH53_2418 PF00563 EAL domain CH53_2418 PF08447 PAS fold CH53_2419 PF00324 Amino acid permease CH53_242 PF03613 PTS system mannose/fructose/sorbose family IID component CH53_2420 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CH53_2421 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CH53_2422 PF08946 Osmosensory transporter coiled coil CH53_2422 PF00083 Sugar (and other) transporter CH53_2424 PF00990 Diguanylate cyclase, GGDEF domain CH53_2424 PF00072 Response regulator receiver domain CH53_2426 PF03806 AbgT putative transporter family CH53_2427 PF07687 Peptidase dimerisation domain CH53_2427 PF01546 Peptidase family M20/M25/M40 CH53_2428 PF02690 Na+/Pi-cotransporter CH53_2429 PF01497 Periplasmic binding protein CH53_243 PF03610 PTS system fructose IIA component CH53_2430 PF01032 FecCD transport family CH53_2431 PF01032 FecCD transport family CH53_2432 PF00005 ABC transporter CH53_2433 PF07715 TonB-dependent Receptor Plug Domain CH53_2433 PF00593 TonB dependent receptor CH53_2434 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CH53_2435 PF06276 Ferric iron reductase FhuF-like transporter CH53_2435 PF04183 IucA / IucC family CH53_2437 PF06276 Ferric iron reductase FhuF-like transporter CH53_2437 PF04183 IucA / IucC family CH53_244 PF01979 Amidohydrolase family CH53_2443 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_2443 PF00529 HlyD membrane-fusion protein of T1SS CH53_2444 PF04632 Fusaric acid resistance protein family CH53_2449 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_2449 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_245 PF01380 SIS domain CH53_2451 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_2451 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_2452 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_2452 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_2453 PF00577 Outer membrane usher protein CH53_2453 PF13954 PapC N-terminal domain CH53_2453 PF13953 PapC C-terminal domain CH53_2458 PF02371 Transposase IS116/IS110/IS902 family CH53_2458 PF01548 Transposase CH53_246 PF01116 Fructose-bisphosphate aldolase class-II CH53_2460 PF02655 ATP-grasp domain CH53_2460 PF00206 Lyase CH53_2465 PF01526 Tn3 transposase DDE domain CH53_2465 PF13700 Domain of unknown function (DUF4158) CH53_2468 PF03797 Autotransporter beta-domain CH53_2468 PF13018 Extended Signal Peptide of Type V secretion system CH53_2468 PF02395 Immunoglobulin A1 protease CH53_2473 PF13700 Domain of unknown function (DUF4158) CH53_2473 PF01526 Tn3 transposase DDE domain CH53_2475 PF05977 Transmembrane secretion effector CH53_2476 PF02574 Homocysteine S-methyltransferase CH53_2477 PF00324 Amino acid permease CH53_2478 PF01545 Cation efflux family CH53_2478 PF16916 Dimerisation domain of Zinc Transporter CH53_248 PF03692 Putative zinc- or iron-chelating domain CH53_2480 PF00501 AMP-binding enzyme CH53_2485 PF01292 Prokaryotic cytochrome b561 CH53_2486 PF13411 MerR HTH family regulatory protein CH53_2488 PF00106 short chain dehydrogenase CH53_249 PF03222 Tryptophan/tyrosine permease family CH53_2494 PF08448 PAS fold CH53_2494 PF00563 EAL domain CH53_2494 PF08447 PAS fold CH53_2494 PF13426 PAS domain CH53_2494 PF05231 MASE1 CH53_2494 PF00990 Diguanylate cyclase, GGDEF domain CH53_2495 PF00294 pfkB family carbohydrate kinase CH53_2498 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH53_2499 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_2499 PF02378 Phosphotransferase system, EIIC CH53_2499 PF00367 phosphotransferase system, EIIB CH53_25 PF01568 Molydopterin dinucleotide binding domain CH53_25 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_25 PF00384 Molybdopterin oxidoreductase CH53_250 PF01132 Elongation factor P (EF-P) OB domain CH53_250 PF08207 Elongation factor P (EF-P) KOW-like domain CH53_250 PF09285 Elongation factor P, C-terminal CH53_2500 PF01380 SIS domain CH53_2500 PF01418 Helix-turn-helix domain, rpiR family CH53_2501 PF02056 Family 4 glycosyl hydrolase CH53_2501 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH53_2502 PF00367 phosphotransferase system, EIIB CH53_2502 PF02378 Phosphotransferase system, EIIC CH53_2503 PF07702 UTRA domain CH53_2503 PF00392 Bacterial regulatory proteins, gntR family CH53_2504 PF00765 Autoinducer synthase CH53_2505 PF03472 Autoinducer binding domain CH53_2505 PF00196 Bacterial regulatory proteins, luxR family CH53_2506 PF00936 BMC domain CH53_2507 PF10662 Ethanolamine utilisation - propanediol utilisation CH53_2508 PF06249 Ethanolamine utilisation protein EutQ CH53_2509 PF01923 Cobalamin adenosyltransferase CH53_251 PF03786 D-mannonate dehydratase (UxuA) CH53_2510 PF01515 Phosphate acetyl/butaryl transferase CH53_2511 PF00936 BMC domain CH53_2512 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH53_2513 PF00171 Aldehyde dehydrogenase family CH53_2515 PF00465 Iron-containing alcohol dehydrogenase CH53_2516 PF04346 Ethanolamine utilisation protein, EutH CH53_2517 PF06277 Ethanolamine utilisation protein EutA CH53_2518 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CH53_2519 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CH53_252 PF01232 Mannitol dehydrogenase Rossmann domain CH53_252 PF08125 Mannitol dehydrogenase C-terminal domain CH53_2520 PF00936 BMC domain CH53_2521 PF00936 BMC domain CH53_2521 PF16365 Ethanolamine utilization protein EutK C-terminus CH53_2523 PF12833 Helix-turn-helix domain CH53_2524 PF00294 pfkB family carbohydrate kinase CH53_2526 PF08244 Glycosyl hydrolases family 32 C terminal CH53_2526 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH53_2528 PF08244 Glycosyl hydrolases family 32 C terminal CH53_2528 PF00251 Glycosyl hydrolases family 32 N-terminal domain CH53_2529 PF01306 LacY proton/sugar symporter CH53_253 PF00392 Bacterial regulatory proteins, gntR family CH53_253 PF07729 FCD domain CH53_2530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_2530 PF00356 Bacterial regulatory proteins, lacI family CH53_2533 PF00196 Bacterial regulatory proteins, luxR family CH53_2543 PF17871 AAA lid domain CH53_2543 PF07724 AAA domain (Cdc48 subfamily) CH53_2543 PF00004 ATPase family associated with various cellular activities (AAA) CH53_2543 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_2544 PF16970 Type-1 fimbrial protein, A CH53_2545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_2545 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_2546 PF13953 PapC C-terminal domain CH53_2546 PF13954 PapC N-terminal domain CH53_2546 PF00577 Outer membrane usher protein CH53_255 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH53_255 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH53_2555 PF04717 Type VI secretion system, phage-baseplate injector CH53_256 PF01569 PAP2 superfamily CH53_2561 PF00196 Bacterial regulatory proteins, luxR family CH53_2562 PF00196 Bacterial regulatory proteins, luxR family CH53_2562 PF00072 Response regulator receiver domain CH53_2563 PF01627 Hpt domain CH53_2563 PF00072 Response regulator receiver domain CH53_2563 PF00512 His Kinase A (phospho-acceptor) domain CH53_2563 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2563 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_2567 PF00484 Carbonic anhydrase CH53_2568 PF13276 HTH-like domain CH53_2568 PF13683 Integrase core domain CH53_2568 PF13276 HTH-like domain CH53_2568 PF13683 Integrase core domain CH53_257 PF00877 NlpC/P60 family CH53_2573 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH53_2573 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH53_2573 PF01276 Orn/Lys/Arg decarboxylase, major domain CH53_2575 PF01464 Transglycosylase SLT domain CH53_2575 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH53_2576 PF04362 Bacterial Fe(2+) trafficking CH53_2577 PF00633 Helix-hairpin-helix motif CH53_2577 PF00730 HhH-GPD superfamily base excision DNA repair protein CH53_2577 PF14815 NUDIX domain CH53_2577 PF10576 Iron-sulfur binding domain of endonuclease III CH53_2578 PF02390 Putative methyltransferase CH53_2579 PF04320 Protein with unknown function (DUF469) CH53_258 PF12792 CSS motif domain associated with EAL CH53_258 PF00563 EAL domain CH53_2580 PF04960 Glutaminase CH53_2581 PF11101 Protein of unknown function (DUF2884) CH53_2582 PF04055 Radical SAM superfamily CH53_2582 PF06969 HemN C-terminal domain CH53_2583 PF01725 Ham1 family CH53_2584 PF02594 Uncharacterised ACR, YggU family COG1872 CH53_2585 PF02325 YGGT family CH53_2586 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH53_2586 PF03807 NADP oxidoreductase coenzyme F420-dependent CH53_2587 PF01168 Alanine racemase, N-terminal domain CH53_2588 PF00437 Type II/IV secretion system protein CH53_2589 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH53_259 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_2590 PF00795 Carbon-nitrogen hydrolase CH53_2591 PF03652 Holliday junction resolvase CH53_2592 PF02622 Uncharacterized ACR, COG1678 CH53_2593 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH53_2593 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH53_2594 PF04452 RNA methyltransferase CH53_2595 PF04231 Endonuclease I CH53_2596 PF17283 SprT-like zinc ribbon domain CH53_2596 PF10263 SprT-like family CH53_2598 PF04143 Sulphur transport CH53_26 PF03916 Polysulphide reductase, NrfD CH53_260 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2600 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH53_2600 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH53_2600 PF02772 S-adenosylmethionine synthetase, central domain CH53_2601 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH53_2601 PF17944 Arginine decarboxylase C-terminal helical extension CH53_2601 PF17810 Arginine decarboxylase helical bundle domain CH53_2602 PF00355 Rieske [2Fe-2S] domain CH53_2603 PF01435 Peptidase family M48 CH53_2604 PF02780 Transketolase, C-terminal domain CH53_2604 PF02779 Transketolase, pyrimidine binding domain CH53_2604 PF00456 Transketolase, thiamine diphosphate binding domain CH53_2605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH53_2605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH53_2606 PF00162 Phosphoglycerate kinase CH53_2607 PF01116 Fructose-bisphosphate aldolase class-II CH53_2608 PF00924 Mechanosensitive ion channel CH53_2608 PF05552 Conserved TM helix CH53_2609 PF01810 LysE type translocator CH53_261 PF00528 Binding-protein-dependent transport system inner membrane component CH53_261 PF12911 N-terminal TM domain of oligopeptide transport permease C CH53_2610 PF04402 Protein of unknown function (DUF541) CH53_2611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2611 PF03466 LysR substrate binding domain CH53_2612 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH53_2613 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_2613 PF01842 ACT domain CH53_2613 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH53_2614 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH53_2615 PF05164 Cell division protein ZapA CH53_2616 PF03695 Uncharacterised protein family (UPF0149) CH53_2617 PF05195 Aminopeptidase P, N-terminal domain CH53_2617 PF00557 Metallopeptidase family M24 CH53_2618 PF01494 FAD binding domain CH53_2619 PF01494 FAD binding domain CH53_262 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_262 PF00005 ABC transporter CH53_2620 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH53_2620 PF01571 Aminomethyltransferase folate-binding domain CH53_2621 PF01597 Glycine cleavage H-protein CH53_2622 PF02347 Glycine cleavage system P-protein CH53_2626 PF03006 Haemolysin-III related CH53_2627 PF01571 Aminomethyltransferase folate-binding domain CH53_2628 PF03937 Flavinator of succinate dehydrogenase CH53_2629 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH53_263 PF13989 YejG-like protein CH53_2630 PF00072 Response regulator receiver domain CH53_2630 PF00486 Transcriptional regulatory protein, C terminal CH53_2631 PF00512 His Kinase A (phospho-acceptor) domain CH53_2631 PF00672 HAMP domain CH53_2631 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2632 PF06123 Inner membrane protein CreD CH53_2633 PF00258 Flavodoxin CH53_2634 PF02899 Phage integrase, N-terminal SAM-like domain CH53_2634 PF00589 Phage integrase family CH53_2636 PF13098 Thioredoxin-like domain CH53_2636 PF10411 Disulfide bond isomerase protein N-terminus CH53_2637 PF01368 DHH family CH53_2637 PF02272 DHHA1 domain CH53_2637 PF17768 RecJ OB domain CH53_2638 PF03462 PCRF domain CH53_2638 PF00472 RF-1 domain CH53_2639 PF01336 OB-fold nucleic acid binding domain CH53_2639 PF00152 tRNA synthetases class II (D, K and N) CH53_2643 PF00990 Diguanylate cyclase, GGDEF domain CH53_2643 PF08448 PAS fold CH53_2644 PF01037 Lrp/AsnC ligand binding domain CH53_2646 PF16338 Domain of unknown function (DUF4968) CH53_2646 PF17137 Domain of unknown function (DUF5110) CH53_2646 PF13802 Galactose mutarotase-like CH53_2646 PF01055 Glycosyl hydrolases family 31 CH53_2647 PF07690 Major Facilitator Superfamily CH53_2649 PF00226 DnaJ domain CH53_2649 PF01556 DnaJ C terminal domain CH53_265 PF07690 Major Facilitator Superfamily CH53_2652 PF01638 HxlR-like helix-turn-helix CH53_2653 PF00484 Carbonic anhydrase CH53_2656 PF03958 Bacterial type II/III secretion system short domain CH53_2656 PF00263 Bacterial type II and III secretion system protein CH53_2657 PF00437 Type II/IV secretion system protein CH53_2658 PF00482 Type II secretion system (T2SS), protein F CH53_2659 PF08334 Type II secretion system (T2SS), protein G CH53_2659 PF07963 Prokaryotic N-terminal methylation motif CH53_266 PF01479 S4 domain CH53_266 PF00849 RNA pseudouridylate synthase CH53_2660 PF02501 Type II secretion system (T2SS), protein I CH53_2660 PF07963 Prokaryotic N-terminal methylation motif CH53_2666 PF06750 Bacterial Peptidase A24 N-terminal domain CH53_2666 PF01478 Type IV leader peptidase family CH53_267 PF00271 Helicase conserved C-terminal domain CH53_267 PF04851 Type III restriction enzyme, res subunit CH53_2670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_2670 PF00672 HAMP domain CH53_2670 PF02203 Tar ligand binding domain homologue CH53_2672 PF03466 LysR substrate binding domain CH53_2672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2673 PF03466 LysR substrate binding domain CH53_2673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2674 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH53_2674 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH53_2676 PF00356 Bacterial regulatory proteins, lacI family CH53_2677 PF00384 Molybdopterin oxidoreductase CH53_2677 PF01568 Molydopterin dinucleotide binding domain CH53_2678 PF00501 AMP-binding enzyme CH53_2678 PF01553 Acyltransferase CH53_2678 PF13193 AMP-binding enzyme C-terminal domain CH53_2679 PF07690 Major Facilitator Superfamily CH53_268 PF01386 Ribosomal L25p family CH53_2680 PF00248 Aldo/keto reductase family CH53_2681 PF03741 Integral membrane protein TerC family CH53_2683 PF02976 DNA mismatch repair enzyme MutH CH53_2684 PF00293 NUDIX domain CH53_2685 PF00391 PEP-utilising enzyme, mobile domain CH53_2685 PF01590 GAF domain CH53_2685 PF02896 PEP-utilising enzyme, TIM barrel domain CH53_2685 PF05524 PEP-utilising enzyme, N-terminal CH53_2686 PF01790 Prolipoprotein diacylglyceryl transferase CH53_2687 PF00303 Thymidylate synthase CH53_2688 PF07963 Prokaryotic N-terminal methylation motif CH53_2689 PF07963 Prokaryotic N-terminal methylation motif CH53_269 PF04245 37-kD nucleoid-associated bacterial protein CH53_2692 PF17946 RecC C-terminal domain CH53_2693 PF00675 Insulinase (Peptidase family M16) CH53_2693 PF05193 Peptidase M16 inactive domain CH53_2693 PF16187 Middle or third domain of peptidase_M16 CH53_2694 PF13361 UvrD-like helicase C-terminal domain CH53_2694 PF00580 UvrD/REP helicase N-terminal domain CH53_2694 PF12705 PD-(D/E)XK nuclease superfamily CH53_2695 PF13538 UvrD-like helicase C-terminal domain CH53_2696 PF00696 Amino acid kinase family CH53_2696 PF00583 Acetyltransferase (GNAT) family CH53_2697 PF01520 N-acetylmuramoyl-L-alanine amidase CH53_2697 PF11741 AMIN domain CH53_27 PF13247 4Fe-4S dicluster domain CH53_270 PF07208 Protein of unknown function (DUF1414) CH53_2701 PF03562 MltA specific insert domain CH53_2701 PF06725 3D domain CH53_2702 PF00899 ThiF family CH53_2703 PF02657 Fe-S metabolism associated domain CH53_2704 PF00266 Aminotransferase class-V CH53_2705 PF06004 Bacterial protein of unknown function (DUF903) CH53_2706 PF03466 LysR substrate binding domain CH53_2706 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2707 PF04241 Protein of unknown function (DUF423) CH53_2708 PF01728 FtsJ-like methyltransferase CH53_2708 PF18125 RlmM ferredoxin-like domain CH53_2709 PF01367 5'-3' exonuclease, C-terminal SAM fold CH53_2709 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH53_271 PF00884 Sulfatase CH53_271 PF11893 Domain of unknown function (DUF3413) CH53_2710 PF11892 Domain of unknown function (DUF3412) CH53_2710 PF03641 Possible lysine decarboxylase CH53_2710 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH53_2711 PF14489 QueF-like protein CH53_2711 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH53_2712 PF07348 Syd protein (SUKH-2) CH53_2713 PF04287 tRNA pseudouridine synthase C CH53_2714 PF00849 RNA pseudouridylate synthase CH53_2715 PF00258 Flavodoxin CH53_2716 PF11944 Protein of unknown function (DUF3461) CH53_2717 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH53_2717 PF14602 Hexapeptide repeat of succinyl-transferase CH53_2717 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_2718 PF08335 GlnD PII-uridylyltransferase CH53_2718 PF01842 ACT domain CH53_2718 PF01909 Nucleotidyltransferase domain CH53_2718 PF01966 HD domain CH53_2719 PF00557 Metallopeptidase family M24 CH53_2720 PF00318 Ribosomal protein S2 CH53_2721 PF00889 Elongation factor TS CH53_2722 PF00696 Amino acid kinase family CH53_2723 PF01765 Ribosome recycling factor CH53_2724 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH53_2724 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH53_2724 PF13288 DXP reductoisomerase C-terminal domain CH53_2725 PF01255 Putative undecaprenyl diphosphate synthase CH53_2727 PF17820 PDZ domain CH53_2727 PF02163 Peptidase family M50 CH53_2728 PF01103 Surface antigen CH53_2728 PF07244 Surface antigen variable number repeat CH53_2729 PF03938 Outer membrane protein (OmpH-like) CH53_2730 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_2730 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH53_2731 PF07977 FabA-like domain CH53_2732 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH53_2732 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_2733 PF02684 Lipid-A-disaccharide synthetase CH53_2734 PF01351 Ribonuclease HII CH53_2735 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH53_2735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH53_2735 PF14579 Helix-hairpin-helix motif CH53_2735 PF02811 PHP domain CH53_2735 PF01336 OB-fold nucleic acid binding domain CH53_2736 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH53_2738 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH53_2739 PF01171 PP-loop family CH53_2739 PF11734 TilS substrate C-terminal domain CH53_2739 PF09179 TilS substrate binding domain CH53_274 PF00194 Eukaryotic-type carbonic anhydrase CH53_2740 PF00034 Cytochrome c CH53_2741 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH53_2742 PF06786 Uncharacterised protein family (UPF0253) CH53_2743 PF07152 YaeQ protein CH53_2744 PF00472 RF-1 domain CH53_2745 PF17185 NlpE C-terminal OB domain CH53_2745 PF04170 NlpE N-terminal domain CH53_2746 PF04073 Aminoacyl-tRNA editing domain CH53_2746 PF03129 Anticodon binding domain CH53_2746 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH53_2747 PF01980 tRNA-methyltransferase O CH53_2747 PF18389 TrmO C-terminal domain CH53_2748 PF16358 RcsF lipoprotein CH53_2749 PF03180 NLPA lipoprotein CH53_275 PF00232 Glycosyl hydrolase family 1 CH53_2750 PF00528 Binding-protein-dependent transport system inner membrane component CH53_2751 PF09383 NIL domain CH53_2751 PF00005 ABC transporter CH53_2758 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH53_2759 PF13091 PLD-like domain CH53_276 PF02378 Phosphotransferase system, EIIC CH53_276 PF00367 phosphotransferase system, EIIB CH53_276 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_2760 PF13380 CoA binding domain CH53_2760 PF00583 Acetyltransferase (GNAT) family CH53_2760 PF13607 Succinyl-CoA ligase like flavodoxin domain CH53_2762 PF00085 Thioredoxin CH53_2763 PF00588 SpoU rRNA Methylase family CH53_2763 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH53_2764 PF07690 Major Facilitator Superfamily CH53_2765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_2765 PF00529 HlyD membrane-fusion protein of T1SS CH53_2766 PF01047 MarR family CH53_2767 PF05437 Branched-chain amino acid transport protein (AzlD) CH53_2768 PF03591 AzlC protein CH53_2769 PF07690 Major Facilitator Superfamily CH53_277 PF01380 SIS domain CH53_277 PF01418 Helix-turn-helix domain, rpiR family CH53_2771 PF00266 Aminotransferase class-V CH53_2772 PF01546 Peptidase family M20/M25/M40 CH53_2772 PF07687 Peptidase dimerisation domain CH53_2773 PF00795 Carbon-nitrogen hydrolase CH53_2774 PF00155 Aminotransferase class I and II CH53_2775 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_2777 PF03079 ARD/ARD' family CH53_2778 PF01008 Initiation factor 2 subunit family CH53_2779 PF01636 Phosphotransferase enzyme family CH53_2780 PF08479 POTRA domain, ShlB-type CH53_2780 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH53_2781 PF05860 haemagglutination activity domain CH53_2782 PF18071 HMW1C N-terminal CH53_2782 PF18254 HMW1 domain 2 CH53_2783 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH53_2783 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH53_2783 PF09317 Domain of unknown function (DUF1974) CH53_2784 PF13580 SIS domain CH53_2785 PF03734 L,D-transpeptidase catalytic domain CH53_2786 PF13230 Glutamine amidotransferases class-II CH53_2787 PF11973 NQRA C-terminal domain CH53_2787 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH53_2788 PF03116 NQR2, RnfD, RnfE family CH53_2789 PF04205 FMN-binding domain CH53_2790 PF02508 Rnf-Nqr subunit, membrane protein CH53_2791 PF02508 Rnf-Nqr subunit, membrane protein CH53_2792 PF00111 2Fe-2S iron-sulfur cluster binding domain CH53_2792 PF00175 Oxidoreductase NAD-binding domain CH53_2792 PF00970 Oxidoreductase FAD-binding domain CH53_2793 PF02424 ApbE family CH53_2794 PF04400 (Na+)-NQR maturation NqrM CH53_2795 PF03009 Glycerophosphoryl diester phosphodiesterase family CH53_2797 PF07478 D-ala D-ala ligase C-terminus CH53_2797 PF01820 D-ala D-ala ligase N-terminus CH53_2798 PF00817 impB/mucB/samB family CH53_2798 PF11798 IMS family HHH motif CH53_2798 PF11799 impB/mucB/samB family C-terminal domain CH53_2799 PF07687 Peptidase dimerisation domain CH53_2799 PF01546 Peptidase family M20/M25/M40 CH53_28 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_28 PF00512 His Kinase A (phospho-acceptor) domain CH53_2800 PF00156 Phosphoribosyl transferase domain CH53_2802 PF07417 Sigma factor-binding transcriptional regulator Crl CH53_2803 PF00696 Amino acid kinase family CH53_2803 PF01472 PUA domain CH53_2804 PF00171 Aldehyde dehydrogenase family CH53_2805 PF00294 pfkB family carbohydrate kinase CH53_2806 PF04227 Indigoidine synthase A like protein CH53_2807 PF07662 Na+ dependent nucleoside transporter C-terminus CH53_2807 PF01773 Na+ dependent nucleoside transporter N-terminus CH53_2808 PF07238 PilZ domain CH53_2808 PF07317 Flagellar regulator YcgR CH53_2809 PF06165 Glycosyltransferase family 36 CH53_2809 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH53_2809 PF10091 Putative glucoamylase CH53_281 PF04865 Baseplate J-like protein CH53_2812 PF08241 Methyltransferase domain CH53_2815 PF01202 Shikimate kinase CH53_2816 PF06865 Pyrimidine/purine nucleoside phosphorylase CH53_2817 PF04381 Putative exonuclease, RdgC CH53_2818 PF00480 ROK family CH53_2819 PF13476 AAA domain CH53_2820 PF12320 Type 5 capsule protein repressor C-terminal domain CH53_2820 PF00149 Calcineurin-like phosphoesterase CH53_2821 PF00072 Response regulator receiver domain CH53_2821 PF00486 Transcriptional regulatory protein, C terminal CH53_2822 PF00989 PAS fold CH53_2822 PF00512 His Kinase A (phospho-acceptor) domain CH53_2822 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2822 PF11808 Phosphate regulon sensor protein PhoR CH53_2823 PF12849 PBP superfamily domain CH53_2824 PF05525 Branched-chain amino acid transport protein CH53_2825 PF00324 Amino acid permease CH53_2826 PF00128 Alpha amylase, catalytic domain CH53_2826 PF02903 Alpha amylase, N-terminal ig-like domain CH53_2829 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH53_2829 PF00578 AhpC/TSA family CH53_2830 PF04336 Acyl carrier protein phosphodiesterase CH53_2831 PF02547 Queuosine biosynthesis protein CH53_2832 PF01702 Queuine tRNA-ribosyltransferase CH53_2833 PF02699 Preprotein translocase subunit CH53_2834 PF02355 Protein export membrane protein CH53_2834 PF07549 SecD/SecF GG Motif CH53_2834 PF13721 SecD export protein N-terminal TM region CH53_2835 PF07549 SecD/SecF GG Motif CH53_2835 PF02355 Protein export membrane protein CH53_2837 PF03477 ATP cone domain CH53_2838 PF01872 RibD C-terminal domain CH53_2838 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH53_2839 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH53_2840 PF01029 NusB family CH53_2841 PF02769 AIR synthase related protein, C-terminal domain CH53_2841 PF00586 AIR synthase related protein, N-terminal domain CH53_2842 PF04608 Phosphatidylglycerophosphatase A CH53_2843 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH53_2843 PF02780 Transketolase, C-terminal domain CH53_2843 PF02779 Transketolase, pyrimidine binding domain CH53_2844 PF00348 Polyprenyl synthetase CH53_2845 PF02609 Exonuclease VII small subunit CH53_2846 PF02568 Thiamine biosynthesis protein (ThiI) CH53_2846 PF02926 THUMP domain CH53_2847 PF01965 DJ-1/PfpI family CH53_2848 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH53_2848 PF02558 Ketopantoate reductase PanE/ApbA CH53_2849 PF04461 Protein of unknown function (DUF520) CH53_2850 PF07690 Major Facilitator Superfamily CH53_2851 PF01040 UbiA prenyltransferase family CH53_2852 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH53_2853 PF00510 Cytochrome c oxidase subunit III CH53_2854 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH53_2855 PF06481 COX Aromatic Rich Motif CH53_2855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH53_2856 PF03502 Nucleoside-specific channel-forming protein, Tsx CH53_2857 PF07690 Major Facilitator Superfamily CH53_2858 PF03923 Uncharacterized lipoprotein CH53_2858 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH53_2859 PF01722 BolA-like protein CH53_2860 PF05697 Bacterial trigger factor protein (TF) CH53_2860 PF05698 Bacterial trigger factor protein (TF) C-terminus CH53_2860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH53_2861 PF00574 Clp protease CH53_2862 PF07724 AAA domain (Cdc48 subfamily) CH53_2862 PF06689 ClpX C4-type zinc finger CH53_2862 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_2863 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH53_2863 PF05362 Lon protease (S16) C-terminal proteolytic domain CH53_2863 PF00004 ATPase family associated with various cellular activities (AAA) CH53_2864 PF00216 Bacterial DNA-binding protein CH53_2865 PF13145 PPIC-type PPIASE domain CH53_2868 PF06508 Queuosine biosynthesis protein QueC CH53_2869 PF12793 Sugar transport-related sRNA regulator N-term CH53_2869 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_2872 PF01037 Lrp/AsnC ligand binding domain CH53_2872 PF13404 AsnC-type helix-turn-helix domain CH53_2873 PF00664 ABC transporter transmembrane region CH53_2873 PF00005 ABC transporter CH53_2874 PF00664 ABC transporter transmembrane region CH53_2874 PF00005 ABC transporter CH53_2875 PF00543 Nitrogen regulatory protein P-II CH53_2876 PF00909 Ammonium Transporter Family CH53_2878 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH53_2879 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH53_2881 PF05321 Haemolysin expression modulating protein CH53_2882 PF10757 Biofilm formation regulator YbaJ CH53_2884 PF00005 ABC transporter CH53_2885 PF00950 ABC 3 transport family CH53_2886 PF01297 Zinc-uptake complex component A periplasmic CH53_2887 PF00444 Ribosomal protein L36 CH53_2888 PF01197 Ribosomal protein L31 CH53_2889 PF00873 AcrB/AcrD/AcrF family CH53_289 PF04984 Phage tail sheath protein subtilisin-like domain CH53_289 PF17482 Phage tail sheath C-terminal domain CH53_2890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_2890 PF00529 HlyD membrane-fusion protein of T1SS CH53_2891 PF08361 MAATS-type transcriptional repressor, C-terminal region CH53_2891 PF00440 Bacterial regulatory proteins, tetR family CH53_2892 PF02635 DsrE/DsrF-like family CH53_2894 PF00924 Mechanosensitive ion channel CH53_2894 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH53_2894 PF12795 Mechanosensitive ion channel porin domain CH53_2896 PF04304 Protein of unknown function (DUF454) CH53_2897 PF00156 Phosphoribosyl transferase domain CH53_2899 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH53_29 PF00072 Response regulator receiver domain CH53_29 PF00196 Bacterial regulatory proteins, luxR family CH53_2900 PF12170 DNA polymerase III tau subunit V interacting with alpha CH53_2900 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH53_2900 PF12169 DNA polymerase III subunits gamma and tau domain III CH53_2901 PF02575 YbaB/EbfC DNA-binding family CH53_2902 PF13662 Toprim domain CH53_2902 PF02132 RecR protein CH53_2903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_2903 PF00183 Hsp90 protein CH53_2904 PF05191 Adenylate kinase, active site lid CH53_2905 PF00762 Ferrochelatase CH53_2906 PF01943 Polysaccharide biosynthesis protein CH53_2907 PF00535 Glycosyl transferase family 2 CH53_2907 PF01501 Glycosyl transferase family 8 CH53_2908 PF00535 Glycosyl transferase family 2 CH53_2909 PF13439 Glycosyltransferase Family 4 CH53_2909 PF00534 Glycosyl transferases group 1 CH53_2910 PF13439 Glycosyltransferase Family 4 CH53_2910 PF00534 Glycosyl transferases group 1 CH53_2911 PF00953 Glycosyl transferase family 4 CH53_2912 PF02719 Polysaccharide biosynthesis protein CH53_2913 PF00534 Glycosyl transferases group 1 CH53_2913 PF13439 Glycosyltransferase Family 4 CH53_2914 PF16363 GDP-mannose 4,6 dehydratase CH53_2915 PF00294 pfkB family carbohydrate kinase CH53_2916 PF00999 Sodium/hydrogen exchanger family CH53_2916 PF02254 TrkA-N domain CH53_2917 PF07690 Major Facilitator Superfamily CH53_2918 PF02872 5'-nucleotidase, C-terminal domain CH53_2918 PF00149 Calcineurin-like phosphoesterase CH53_2919 PF04073 Aminoacyl-tRNA editing domain CH53_2920 PF01963 TraB family CH53_2921 PF00403 Heavy-metal-associated domain CH53_2922 PF13411 MerR HTH family regulatory protein CH53_2923 PF01957 NfeD-like C-terminal, partner-binding CH53_2924 PF01145 SPFH domain / Band 7 family CH53_2924 PF16200 C-terminal region of band_7 CH53_2925 PF00085 Thioredoxin CH53_2926 PF00106 short chain dehydrogenase CH53_2927 PF13472 GDSL-like Lipase/Acylhydrolase family CH53_2928 PF00005 ABC transporter CH53_2930 PF02222 ATP-grasp domain CH53_2930 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH53_2931 PF00731 AIR carboxylase CH53_2932 PF00149 Calcineurin-like phosphoesterase CH53_2933 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH53_2934 PF09190 DALR domain CH53_2934 PF01406 tRNA synthetases class I (C) catalytic domain CH53_2936 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH53_2936 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH53_2938 PF13356 Arm DNA-binding domain CH53_2938 PF00589 Phage integrase family CH53_294 PF00959 Phage lysozyme CH53_2943 PF02311 AraC-like ligand binding domain CH53_2943 PF12833 Helix-turn-helix domain CH53_2947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2947 PF03466 LysR substrate binding domain CH53_2948 PF01979 Amidohydrolase family CH53_2950 PF08450 SMP-30/Gluconolactonase/LRE-like region CH53_2952 PF03358 NADPH-dependent FMN reductase CH53_2955 PF03435 Saccharopine dehydrogenase NADP binding domain CH53_2957 PF00106 short chain dehydrogenase CH53_296 PF06530 Phage antitermination protein Q CH53_2960 PF00440 Bacterial regulatory proteins, tetR family CH53_2961 PF07690 Major Facilitator Superfamily CH53_2962 PF00440 Bacterial regulatory proteins, tetR family CH53_2963 PF00665 Integrase core domain CH53_2963 PF13936 Helix-turn-helix domain CH53_2968 PF07690 Major Facilitator Superfamily CH53_297 PF00717 Peptidase S24-like CH53_297 PF01381 Helix-turn-helix CH53_2970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_2970 PF03466 LysR substrate binding domain CH53_2971 PF12146 Serine aminopeptidase, S33 CH53_2972 PF07859 alpha/beta hydrolase fold CH53_2973 PF13505 Outer membrane protein beta-barrel domain CH53_2976 PF03230 Antirestriction protein CH53_2977 PF04002 RadC-like JAB domain CH53_2979 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH53_298 PF06183 DinI-like family CH53_2980 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH53_2982 PF00589 Phage integrase family CH53_2983 PF00589 Phage integrase family CH53_2984 PF04945 YHS domain CH53_2986 PF04055 Radical SAM superfamily CH53_2987 PF11230 Protein of unknown function (DUF3029) CH53_2988 PF04193 PQ loop repeat CH53_299 PF01278 Omptin family CH53_2990 PF02056 Family 4 glycosyl hydrolase CH53_2990 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH53_2991 PF12833 Helix-turn-helix domain CH53_2992 PF00657 GDSL-like Lipase/Acylhydrolase CH53_3 PF01063 Amino-transferase class IV CH53_30 PF03279 Bacterial lipid A biosynthesis acyltransferase CH53_300 PF00672 HAMP domain CH53_300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_300 PF02743 Cache domain CH53_3001 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH53_3001 PF00413 Matrixin CH53_3001 PF08548 Peptidase M10 serralysin C terminal CH53_3002 PF08548 Peptidase M10 serralysin C terminal CH53_3002 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH53_3002 PF00413 Matrixin CH53_3003 PF02974 Protease inhibitor Inh CH53_3004 PF00005 ABC transporter CH53_3004 PF00664 ABC transporter transmembrane region CH53_3005 PF00529 HlyD membrane-fusion protein of T1SS CH53_3006 PF02321 Outer membrane efflux protein CH53_3007 PF00849 RNA pseudouridylate synthase CH53_3008 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH53_301 PF12706 Beta-lactamase superfamily domain CH53_3012 PF12102 Domain of unknown function (DUF3578) CH53_3012 PF07728 AAA domain (dynein-related subfamily) CH53_3015 PF03466 LysR substrate binding domain CH53_3015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3018 PF00753 Metallo-beta-lactamase superfamily CH53_3018 PF10996 Beta-Casp domain CH53_3018 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CH53_3019 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3019 PF03466 LysR substrate binding domain CH53_3022 PF00873 AcrB/AcrD/AcrF family CH53_3025 PF02321 Outer membrane efflux protein CH53_3025 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH53_3028 PF00440 Bacterial regulatory proteins, tetR family CH53_3029 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH53_303 PF00144 Beta-lactamase CH53_3033 PF02447 GntP family permease CH53_3034 PF05247 Flagellar transcriptional activator (FlhD) CH53_3035 PF05280 Flagellar transcriptional activator (FlhC) CH53_3036 PF00480 ROK family CH53_3037 PF00834 Ribulose-phosphate 3 epimerase family CH53_3038 PF02653 Branched-chain amino acid transport system / permease component CH53_3039 PF00005 ABC transporter CH53_3040 PF13407 Periplasmic binding protein domain CH53_3041 PF01380 SIS domain CH53_3041 PF01418 Helix-turn-helix domain, rpiR family CH53_3042 PF02502 Ribose/Galactose Isomerase CH53_3044 PF09857 Putative toxin of bacterial toxin-antitoxin pair CH53_3045 PF08007 Cupin superfamily protein CH53_3047 PF00005 ABC transporter CH53_3047 PF00664 ABC transporter transmembrane region CH53_305 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH53_3050 PF00149 Calcineurin-like phosphoesterase CH53_3052 PF00196 Bacterial regulatory proteins, luxR family CH53_3053 PF00313 'Cold-shock' DNA-binding domain CH53_3054 PF00313 'Cold-shock' DNA-binding domain CH53_3055 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH53_3056 PF00990 Diguanylate cyclase, GGDEF domain CH53_3056 PF05230 MASE2 domain CH53_3057 PF02416 mttA/Hcf106 family CH53_3058 PF04055 Radical SAM superfamily CH53_3058 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH53_3059 PF03099 Biotin/lipoate A/B protein ligase family CH53_306 PF05681 Fumarate hydratase (Fumerase) CH53_306 PF05683 Fumarase C-terminus CH53_3060 PF04359 Protein of unknown function (DUF493) CH53_3061 PF07943 Penicillin-binding protein 5, C-terminal domain CH53_3061 PF00768 D-alanyl-D-alanine carboxypeptidase CH53_3062 PF03330 Lytic transglycolase CH53_3062 PF05036 Sporulation related domain CH53_3063 PF01098 Cell cycle protein CH53_3064 PF03717 Penicillin-binding Protein dimerisation domain CH53_3064 PF00905 Penicillin binding protein transpeptidase domain CH53_3065 PF02590 Predicted SPOUT methyltransferase CH53_3067 PF01467 Cytidylyltransferase-like CH53_3068 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH53_3068 PF06144 DNA polymerase III, delta subunit CH53_3069 PF04390 Lipopolysaccharide-assembly CH53_307 PF03466 LysR substrate binding domain CH53_307 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3070 PF00133 tRNA synthetases class I (I, L, M and V) CH53_3070 PF08264 Anticodon-binding domain of tRNA CH53_3070 PF13603 Leucyl-tRNA synthetase, Domain 2 CH53_3071 PF07295 Zinc-ribbon containing domain CH53_3072 PF01156 Inosine-uridine preferring nucleoside hydrolase CH53_3073 PF00005 ABC transporter CH53_3074 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3075 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3076 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_3078 PF00795 Carbon-nitrogen hydrolase CH53_3079 PF00571 CBS domain CH53_3079 PF03471 Transporter associated domain CH53_308 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_308 PF14824 Sirohaem biosynthesis protein central CH53_308 PF10414 Sirohaem synthase dimerisation region CH53_3080 PF02130 Uncharacterized protein family UPF0054 CH53_3081 PF02562 PhoH-like protein CH53_3082 PF04055 Radical SAM superfamily CH53_3082 PF01938 TRAM domain CH53_3082 PF00919 Uncharacterized protein family UPF0004 CH53_3083 PF01494 FAD binding domain CH53_309 PF00288 GHMP kinases N terminal domain CH53_3092 PF00733 Asparagine synthase CH53_3092 PF13537 Glutamine amidotransferase domain CH53_3094 PF13344 Haloacid dehalogenase-like hydrolase CH53_3095 PF00480 ROK family CH53_3095 PF01047 MarR family CH53_3096 PF01979 Amidohydrolase family CH53_3097 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH53_3098 PF00367 phosphotransferase system, EIIB CH53_3098 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_3098 PF02378 Phosphotransferase system, EIIC CH53_3099 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH53_3099 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH53_31 PF07681 DoxX CH53_310 PF02310 B12 binding domain CH53_3100 PF03573 outer membrane porin, OprD family CH53_3101 PF13982 YbfN-like lipoprotein CH53_3102 PF00728 Glycosyl hydrolase family 20, catalytic domain CH53_3102 PF02838 Glycosyl hydrolase family 20, domain 2 CH53_3102 PF03173 Putative carbohydrate binding domain CH53_3102 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH53_3103 PF01475 Ferric uptake regulator family CH53_3104 PF00258 Flavodoxin CH53_3105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_3105 PF02203 Tar ligand binding domain homologue CH53_3105 PF00672 HAMP domain CH53_3106 PF01402 Ribbon-helix-helix protein, copG family CH53_3108 PF12697 Alpha/beta hydrolase family CH53_3109 PF17287 POTRA domain CH53_3109 PF08479 POTRA domain, ShlB-type CH53_3109 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH53_311 PF13941 MutL protein CH53_3110 PF13018 Extended Signal Peptide of Type V secretion system CH53_3110 PF13332 Hemagglutinin repeat CH53_3110 PF05860 haemagglutination activity domain CH53_3110 PF04829 Pre-toxin domain with VENN motif CH53_3115 PF13610 DDE domain CH53_3116 PF05594 Haemagluttinin repeat CH53_3116 PF13332 Hemagglutinin repeat CH53_3116 PF05860 haemagglutination activity domain CH53_3116 PF04829 Pre-toxin domain with VENN motif CH53_3118 PF03925 SeqA protein C-terminal domain CH53_3118 PF17206 SeqA protein N-terminal domain CH53_3119 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH53_3119 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH53_3119 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH53_3119 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH53_312 PF06368 Methylaspartate mutase E chain (MutE) CH53_3121 PF00486 Transcriptional regulatory protein, C terminal CH53_3121 PF00072 Response regulator receiver domain CH53_3122 PF13493 Domain of unknown function (DUF4118) CH53_3122 PF02702 Osmosensitive K+ channel His kinase sensor domain CH53_3122 PF13492 GAF domain CH53_3122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3122 PF00512 His Kinase A (phospho-acceptor) domain CH53_3123 PF02669 K+-transporting ATPase, c chain CH53_3125 PF03814 Potassium-transporting ATPase A subunit CH53_3126 PF10725 Protein of unknown function (DUF2517) CH53_3127 PF08349 Protein of unknown function (DUF1722) CH53_3128 PF00875 DNA photolyase CH53_3128 PF03441 FAD binding domain of DNA photolyase CH53_3129 PF02112 cAMP phosphodiesterases class-II CH53_313 PF07476 Methylaspartate ammonia-lyase C-terminus CH53_313 PF05034 Methylaspartate ammonia-lyase N-terminus CH53_3130 PF01784 NIF3 (NGG1p interacting factor 3) CH53_3131 PF02682 Carboxyltransferase domain, subdomain C and D CH53_3132 PF02626 Carboxyltransferase domain, subdomain A and B CH53_3133 PF03746 LamB/YcsF family CH53_3136 PF01470 Pyroglutamyl peptidase CH53_3137 PF00285 Citrate synthase, C-terminal domain CH53_3138 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH53_3139 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH53_3140 PF02910 Fumarate reductase flavoprotein C-term CH53_3140 PF00890 FAD binding domain CH53_3141 PF13085 2Fe-2S iron-sulfur cluster binding domain CH53_3142 PF16870 2-oxoglutarate dehydrogenase C-terminal CH53_3142 PF00676 Dehydrogenase E1 component CH53_3142 PF16078 2-oxoglutarate dehydrogenase N-terminus CH53_3142 PF02779 Transketolase, pyrimidine binding domain CH53_3143 PF00364 Biotin-requiring enzyme CH53_3143 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH53_3143 PF02817 e3 binding domain CH53_3144 PF00549 CoA-ligase CH53_3144 PF08442 ATP-grasp domain CH53_3145 PF02629 CoA binding domain CH53_3145 PF00549 CoA-ligase CH53_3146 PF02872 5'-nucleotidase, C-terminal domain CH53_3146 PF00149 Calcineurin-like phosphoesterase CH53_3147 PF01654 Cytochrome bd terminal oxidase subunit I CH53_3148 PF02322 Cytochrome bd terminal oxidase subunit II CH53_3149 PF08173 Membrane bound YbgT-like protein CH53_3150 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH53_3151 PF03061 Thioesterase superfamily CH53_3152 PF01618 MotA/TolQ/ExbB proton channel family CH53_3153 PF02472 Biopolymer transport protein ExbD/TolR CH53_3154 PF06519 TolA C-terminal CH53_3154 PF06519 TolA C-terminal CH53_3155 PF04052 TolB amino-terminal domain CH53_3155 PF07676 WD40-like Beta Propeller Repeat CH53_3156 PF00691 OmpA family CH53_3157 PF13174 Tetratricopeptide repeat CH53_3157 PF16331 TolA binding protein trimerisation CH53_316 PF00375 Sodium:dicarboxylate symporter family CH53_3162 PF02445 Quinolinate synthetase A protein CH53_3163 PF04973 Nicotinamide mononucleotide transporter CH53_3164 PF01545 Cation efflux family CH53_3165 PF01627 Hpt domain CH53_3165 PF00512 His Kinase A (phospho-acceptor) domain CH53_3165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3165 PF00989 PAS fold CH53_3165 PF00072 Response regulator receiver domain CH53_3165 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_3166 PF00072 Response regulator receiver domain CH53_3166 PF00196 Bacterial regulatory proteins, luxR family CH53_3167 PF00793 DAHP synthetase I family CH53_3168 PF00300 Histidine phosphatase superfamily (branch 1) CH53_3169 PF07769 psiF repeat CH53_3170 PF01263 Aldose 1-epimerase CH53_3171 PF10509 Galactokinase galactose-binding signature CH53_3171 PF08544 GHMP kinases C terminal CH53_3171 PF00288 GHMP kinases N terminal domain CH53_3172 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH53_3172 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH53_3173 PF16363 GDP-mannose 4,6 dehydratase CH53_3175 PF00005 ABC transporter CH53_3176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3176 PF03459 TOBE domain CH53_3177 PF10766 Multidrug efflux pump-associated protein AcrZ CH53_3179 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3180 PF00005 ABC transporter CH53_3180 PF03459 TOBE domain CH53_3182 PF10282 Lactonase, 7-bladed beta-propeller CH53_3183 PF00202 Aminotransferase class-III CH53_3184 PF04055 Radical SAM superfamily CH53_3184 PF06968 Biotin and Thiamin Synthesis associated domain CH53_3185 PF00155 Aminotransferase class I and II CH53_3186 PF08241 Methyltransferase domain CH53_3188 PF00005 ABC transporter CH53_319 PF13954 PapC N-terminal domain CH53_319 PF00577 Outer membrane usher protein CH53_319 PF13953 PapC C-terminal domain CH53_3190 PF02151 UvrB/uvrC motif CH53_3190 PF12344 Ultra-violet resistance protein B CH53_3190 PF00271 Helicase conserved C-terminal domain CH53_3190 PF04851 Type III restriction enzyme, res subunit CH53_3190 PF17757 UvrB interaction domain CH53_3191 PF01933 Uncharacterised protein family UPF0052 CH53_3192 PF09905 DNA-binding protein VF530 CH53_3193 PF06463 Molybdenum Cofactor Synthesis C CH53_3193 PF04055 Radical SAM superfamily CH53_3194 PF01967 MoaC family CH53_3195 PF02597 ThiS family CH53_3196 PF02391 MoaE protein CH53_3197 PF01027 Inhibitor of apoptosis-promoting Bax1 CH53_32 PF07690 Major Facilitator Superfamily CH53_3200 PF00005 ABC transporter CH53_3201 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_3202 PF09209 Tetracyclin repressor-like, C-terminal domain CH53_3202 PF00440 Bacterial regulatory proteins, tetR family CH53_3203 PF00271 Helicase conserved C-terminal domain CH53_3203 PF00270 DEAD/DEAH box helicase CH53_3204 PF01207 Dihydrouridine synthase (Dus) CH53_3205 PF00571 CBS domain CH53_3205 PF01769 Divalent cation transporter CH53_3205 PF03448 MgtE intracellular N domain CH53_3207 PF00768 D-alanyl-D-alanine carboxypeptidase CH53_3208 PF09330 D-lactate dehydrogenase, membrane binding CH53_3208 PF01565 FAD binding domain CH53_3209 PF01928 CYTH domain CH53_3210 PF01844 HNH endonuclease CH53_3212 PF04226 Transglycosylase associated protein CH53_3213 PF00005 ABC transporter CH53_3215 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3216 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3217 PF07308 Protein of unknown function (DUF1456) CH53_3219 PF02653 Branched-chain amino acid transport system / permease component CH53_3220 PF02653 Branched-chain amino acid transport system / permease component CH53_3221 PF00005 ABC transporter CH53_3221 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH53_3222 PF00005 ABC transporter CH53_3223 PF00581 Rhodanese-like domain CH53_3224 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH53_3224 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH53_3226 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH53_3227 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3228 PF00005 ABC transporter CH53_3229 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3233 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3233 PF03466 LysR substrate binding domain CH53_3234 PF00892 EamA-like transporter family CH53_3236 PF00267 Gram-negative porin CH53_3237 PF13307 Helicase C-terminal domain CH53_3237 PF06733 DEAD_2 CH53_3238 PF00230 Major intrinsic protein CH53_3239 PF02885 Glycosyl transferase family, helical bundle domain CH53_3240 PF05971 RNA methyltransferase CH53_3241 PF00005 ABC transporter CH53_3242 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3243 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_3244 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH53_3245 PF00210 Ferritin-like domain CH53_3246 PF13847 Methyltransferase domain CH53_3247 PF00892 EamA-like transporter family CH53_3248 PF13505 Outer membrane protein beta-barrel domain CH53_3252 PF00005 ABC transporter CH53_3252 PF12848 ABC transporter CH53_3253 PF00899 ThiF family CH53_3254 PF03454 MoeA C-terminal region (domain IV) CH53_3254 PF00994 Probable molybdopterin binding domain CH53_3254 PF03453 MoeA N-terminal region (domain I and II) CH53_3257 PF00083 Sugar (and other) transporter CH53_3259 PF00005 ABC transporter CH53_3263 PF00756 Putative esterase CH53_3264 PF08240 Alcohol dehydrogenase GroES-like domain CH53_3264 PF00107 Zinc-binding dehydrogenase CH53_3265 PF03466 LysR substrate binding domain CH53_3265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3266 PF06779 Uncharacterised MFS-type transporter YbfB CH53_3267 PF01227 GTP cyclohydrolase I CH53_3268 PF04235 Protein of unknown function (DUF418) CH53_3269 PF00356 Bacterial regulatory proteins, lacI family CH53_3270 PF13407 Periplasmic binding protein domain CH53_3271 PF00005 ABC transporter CH53_3272 PF02653 Branched-chain amino acid transport system / permease component CH53_3273 PF01226 Formate/nitrite transporter CH53_3274 PF01590 GAF domain CH53_3274 PF00158 Sigma-54 interaction domain CH53_3275 PF00384 Molybdopterin oxidoreductase CH53_3275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_3275 PF01568 Molydopterin dinucleotide binding domain CH53_3276 PF13247 4Fe-4S dicluster domain CH53_3276 PF12800 4Fe-4S binding domain CH53_3277 PF01750 Hydrogenase maturation protease CH53_3278 PF07450 Formate hydrogenlyase maturation protein HycH CH53_3279 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH53_3280 PF12838 4Fe-4S dicluster domain CH53_3281 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH53_3281 PF00374 Nickel-dependent hydrogenase CH53_3281 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH53_3282 PF00361 Proton-conducting membrane transporter CH53_3282 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH53_3283 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH53_3284 PF00361 Proton-conducting membrane transporter CH53_3284 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH53_3285 PF00146 NADH dehydrogenase CH53_3286 PF00361 Proton-conducting membrane transporter CH53_3287 PF12798 4Fe-4S binding domain CH53_3287 PF00037 4Fe-4S binding domain CH53_3288 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH53_3289 PF01455 HupF/HypC family CH53_329 PF00295 Glycosyl hydrolases family 28 CH53_3291 PF02698 DUF218 domain CH53_3292 PF03949 Malic enzyme, NAD binding domain CH53_3292 PF00390 Malic enzyme, N-terminal domain CH53_3293 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH53_3293 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH53_3294 PF04172 LrgB-like family CH53_3295 PF03788 LrgA family CH53_3296 PF07690 Major Facilitator Superfamily CH53_33 PF00854 POT family CH53_330 PF07470 Glycosyl Hydrolase Family 88 CH53_3300 PF01588 Putative tRNA binding domain CH53_3300 PF09334 tRNA synthetases class I (M) CH53_3301 PF10609 NUBPL iron-transfer P-loop NTPase CH53_3302 PF00485 Phosphoribulokinase / Uridine kinase family CH53_3303 PF00692 dUTPase CH53_3304 PF05170 AsmA family CH53_3305 PF03606 C4-dicarboxylate anaerobic carrier CH53_3306 PF00571 CBS domain CH53_3306 PF03471 Transporter associated domain CH53_3306 PF03741 Integral membrane protein TerC family CH53_3307 PF01050 Mannose-6-phosphate isomerase CH53_3307 PF00483 Nucleotidyl transferase CH53_3308 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH53_3308 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH53_3308 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH53_3308 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH53_3310 PF00005 ABC transporter CH53_3316 PF13419 Haloacid dehalogenase-like hydrolase CH53_3319 PF16363 GDP-mannose 4,6 dehydratase CH53_332 PF05524 PEP-utilising enzyme, N-terminal CH53_332 PF00391 PEP-utilising enzyme, mobile domain CH53_332 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_332 PF00381 PTS HPr component phosphorylation site CH53_332 PF02896 PEP-utilising enzyme, TIM barrel domain CH53_3320 PF01370 NAD dependent epimerase/dehydratase family CH53_3322 PF13439 Glycosyltransferase Family 4 CH53_3322 PF00534 Glycosyl transferases group 1 CH53_3323 PF00483 Nucleotidyl transferase CH53_3324 PF00483 Nucleotidyl transferase CH53_3325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH53_3325 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH53_3326 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH53_3326 PF01502 Phosphoribosyl-AMP cyclohydrolase CH53_3327 PF00977 Histidine biosynthesis protein CH53_3328 PF00977 Histidine biosynthesis protein CH53_3329 PF00117 Glutamine amidotransferase class-I CH53_3330 PF00475 Imidazoleglycerol-phosphate dehydratase CH53_3331 PF00155 Aminotransferase class I and II CH53_3332 PF00815 Histidinol dehydrogenase CH53_3333 PF01634 ATP phosphoribosyltransferase CH53_3333 PF08029 HisG, C-terminal domain CH53_3334 PF01370 NAD dependent epimerase/dehydratase family CH53_3335 PF02653 Branched-chain amino acid transport system / permease component CH53_3336 PF00005 ABC transporter CH53_3337 PF00465 Iron-containing alcohol dehydrogenase CH53_3339 PF13520 Amino acid permease CH53_334 PF00267 Gram-negative porin CH53_3340 PF00929 Exonuclease CH53_3340 PF08411 Exonuclease C-terminal CH53_3342 PF04363 Protein of unknown function (DUF496) CH53_3343 PF02653 Branched-chain amino acid transport system / permease component CH53_3344 PF02653 Branched-chain amino acid transport system / permease component CH53_3346 PF13407 Periplasmic binding protein domain CH53_3347 PF00288 GHMP kinases N terminal domain CH53_3348 PF00155 Aminotransferase class I and II CH53_3349 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_3349 PF10414 Sirohaem synthase dimerisation region CH53_3349 PF14824 Sirohaem biosynthesis protein central CH53_335 PF07690 Major Facilitator Superfamily CH53_3350 PF00871 Acetokinase family CH53_3351 PF10662 Ethanolamine utilisation - propanediol utilisation CH53_3352 PF00936 BMC domain CH53_3354 PF10531 SLBB domain CH53_3354 PF13237 4Fe-4S dicluster domain CH53_3354 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH53_3354 PF13375 RnfC Barrel sandwich hybrid domain CH53_3355 PF00465 Iron-containing alcohol dehydrogenase CH53_3356 PF00171 Aldehyde dehydrogenase family CH53_3357 PF01923 Cobalamin adenosyltransferase CH53_3358 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH53_336 PF01627 Hpt domain CH53_336 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_336 PF16359 RcsD-ABL domain CH53_3360 PF06130 Phosphate propanoyltransferase CH53_3362 PF00936 BMC domain CH53_3364 PF08841 Diol dehydratase reactivase ATPase-like domain CH53_3364 PF18427 DD-reactivating factor swiveling domain CH53_3365 PF02287 Dehydratase small subunit CH53_3366 PF02288 Dehydratase medium subunit CH53_3367 PF02286 Dehydratase large subunit CH53_3368 PF00936 BMC domain CH53_3369 PF00936 BMC domain CH53_337 PF00196 Bacterial regulatory proteins, luxR family CH53_337 PF00072 Response regulator receiver domain CH53_3370 PF00230 Major intrinsic protein CH53_3371 PF10114 Sensory domain found in PocR CH53_3371 PF12833 Helix-turn-helix domain CH53_3372 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH53_3372 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH53_3373 PF03186 CobD/Cbib protein CH53_3374 PF02570 Precorrin-8X methylmutase CH53_3375 PF01888 CbiD CH53_3376 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_3377 PF05175 Methyltransferase small domain CH53_3378 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_3379 PF11761 Cobalamin biosynthesis central region CH53_3379 PF11760 Cobalamin synthesis G N-terminal CH53_3379 PF01890 Cobalamin synthesis G C-terminus CH53_338 PF00512 His Kinase A (phospho-acceptor) domain CH53_338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_338 PF09456 RcsC Alpha-Beta-Loop (ABL) CH53_338 PF00072 Response regulator receiver domain CH53_3380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_3381 PF02571 Precorrin-6x reductase CbiJ/CobK CH53_3382 PF06180 Cobalt chelatase (CbiK) CH53_3383 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_3384 PF01891 Cobalt uptake substrate-specific transmembrane region CH53_3385 PF02553 Cobalt transport protein component CbiN CH53_3386 PF02361 Cobalt transport protein CH53_3387 PF00005 ABC transporter CH53_3388 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH53_3389 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH53_339 PF00521 DNA gyrase/topoisomerase IV, subunit A CH53_339 PF03989 DNA gyrase C-terminal domain, beta-propeller CH53_3390 PF02654 Cobalamin-5-phosphate synthase CH53_3391 PF00300 Histidine phosphatase superfamily (branch 1) CH53_3392 PF02277 Phosphoribosyltransferase CH53_3393 PF03466 LysR substrate binding domain CH53_3393 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3395 PF01048 Phosphorylase superfamily CH53_3396 PF03825 Nucleoside H+ symporter CH53_3397 PF00764 Arginosuccinate synthase CH53_3398 PF01554 MatE CH53_3399 PF00072 Response regulator receiver domain CH53_3399 PF01584 CheW-like domain CH53_3404 PF00455 DeoR C terminal sensor domain CH53_3404 PF08220 DeoR-like helix-turn-helix domain CH53_3405 PF00107 Zinc-binding dehydrogenase CH53_3405 PF08240 Alcohol dehydrogenase GroES-like domain CH53_3406 PF03466 LysR substrate binding domain CH53_3406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_341 PF03477 ATP cone domain CH53_341 PF00317 Ribonucleotide reductase, all-alpha domain CH53_341 PF02867 Ribonucleotide reductase, barrel domain CH53_3411 PF00691 OmpA family CH53_3411 PF05736 OprF membrane domain CH53_3414 PF00004 ATPase family associated with various cellular activities (AAA) CH53_3414 PF17871 AAA lid domain CH53_3414 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_3414 PF07724 AAA domain (Cdc48 subfamily) CH53_342 PF00268 Ribonucleotide reductase, small chain CH53_343 PF00111 2Fe-2S iron-sulfur cluster binding domain CH53_3430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_3430 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_3432 PF13954 PapC N-terminal domain CH53_3432 PF00577 Outer membrane usher protein CH53_3432 PF13953 PapC C-terminal domain CH53_3433 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_3433 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_3435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3435 PF01627 Hpt domain CH53_3435 PF00989 PAS fold CH53_3435 PF00072 Response regulator receiver domain CH53_3435 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_3435 PF00512 His Kinase A (phospho-acceptor) domain CH53_3436 PF00196 Bacterial regulatory proteins, luxR family CH53_3436 PF00072 Response regulator receiver domain CH53_3438 PF08402 TOBE domain CH53_3438 PF00005 ABC transporter CH53_3439 PF00528 Binding-protein-dependent transport system inner membrane component CH53_344 PF03974 Ecotin CH53_3441 PF07690 Major Facilitator Superfamily CH53_3442 PF05231 MASE1 CH53_3442 PF07730 Histidine kinase CH53_3442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3443 PF00196 Bacterial regulatory proteins, luxR family CH53_3443 PF00072 Response regulator receiver domain CH53_3444 PF12431 Transcriptional regulator CH53_3444 PF00072 Response regulator receiver domain CH53_3445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3445 PF17203 Single cache domain 3 CH53_3445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH53_3445 PF00989 PAS fold CH53_3446 PF08218 Citrate lyase ligase C-terminal domain CH53_3447 PF06857 Malonate decarboxylase delta subunit (MdcD) CH53_3448 PF03328 HpcH/HpaI aldolase/citrate lyase family CH53_3449 PF04223 Citrate lyase, alpha subunit (CitF) CH53_345 PF00082 Subtilase family CH53_3450 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH53_3451 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH53_3452 PF00939 Sodium:sulfate symporter transmembrane region CH53_3453 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH53_3455 PF03480 Bacterial extracellular solute-binding protein, family 7 CH53_3456 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH53_3456 PF01648 4'-phosphopantetheinyl transferase superfamily CH53_3458 PF00083 Sugar (and other) transporter CH53_3459 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_3459 PF00381 PTS HPr component phosphorylation site CH53_3462 PF00356 Bacterial regulatory proteins, lacI family CH53_3463 PF00072 Response regulator receiver domain CH53_3463 PF02954 Bacterial regulatory protein, Fis family CH53_3463 PF00158 Sigma-54 interaction domain CH53_3464 PF00512 His Kinase A (phospho-acceptor) domain CH53_3464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3465 PF13801 Heavy-metal resistance CH53_349 PF00994 Probable molybdopterin binding domain CH53_350 PF03222 Tryptophan/tyrosine permease family CH53_3501 PF00589 Phage integrase family CH53_3501 PF13356 Arm DNA-binding domain CH53_3503 PF07669 Eco57I restriction-modification methylase CH53_3504 PF00589 Phage integrase family CH53_3504 PF13356 Arm DNA-binding domain CH53_3507 PF06167 Glucose-regulated metallo-peptidase M90 CH53_351 PF07437 YfaZ precursor CH53_3511 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_3511 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_3512 PF13953 PapC C-terminal domain CH53_3512 PF13954 PapC N-terminal domain CH53_3512 PF00577 Outer membrane usher protein CH53_3514 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_3514 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_3516 PF00483 Nucleotidyl transferase CH53_3517 PF00328 Histidine phosphatase superfamily (branch 2) CH53_3518 PF14001 YdfZ protein CH53_352 PF06628 Catalase-related immune-responsive CH53_352 PF00199 Catalase CH53_3520 PF01037 Lrp/AsnC ligand binding domain CH53_3521 PF10777 Inner membrane protein YlaC CH53_3522 PF16197 Ketoacyl-synthetase C-terminal extension CH53_3522 PF08240 Alcohol dehydrogenase GroES-like domain CH53_3522 PF00107 Zinc-binding dehydrogenase CH53_3522 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_3522 PF00550 Phosphopantetheine attachment site CH53_3522 PF08659 KR domain CH53_3522 PF14765 Polyketide synthase dehydratase CH53_3522 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_3522 PF00698 Acyl transferase domain CH53_3523 PF00703 Glycosyl hydrolases family 2 CH53_3523 PF16353 Domain of unknown function(DUF4981) CH53_3523 PF02929 Beta galactosidase small chain CH53_3523 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH53_3523 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH53_3524 PF00356 Bacterial regulatory proteins, lacI family CH53_3525 PF00313 'Cold-shock' DNA-binding domain CH53_3526 PF10781 Dextransucrase DSRB CH53_3527 PF00672 HAMP domain CH53_3527 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_3527 PF02203 Tar ligand binding domain homologue CH53_3528 PF02308 MgtC family CH53_3529 PF00689 Cation transporting ATPase, C-terminus CH53_3529 PF00690 Cation transporter/ATPase, N-terminus CH53_353 PF00501 AMP-binding enzyme CH53_353 PF13193 AMP-binding enzyme C-terminal domain CH53_3530 PF16884 N-terminal domain of oxidoreductase CH53_3530 PF00107 Zinc-binding dehydrogenase CH53_3531 PF00582 Universal stress protein family CH53_3532 PF05247 Flagellar transcriptional activator (FlhD) CH53_3533 PF05280 Flagellar transcriptional activator (FlhC) CH53_3534 PF01618 MotA/TolQ/ExbB proton channel family CH53_3535 PF00691 OmpA family CH53_3535 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH53_3536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3536 PF01627 Hpt domain CH53_3536 PF02895 Signal transducing histidine kinase, homodimeric domain CH53_3536 PF09078 CheY binding CH53_3536 PF01584 CheW-like domain CH53_3537 PF01584 CheW-like domain CH53_3538 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_3538 PF02203 Tar ligand binding domain homologue CH53_3538 PF00672 HAMP domain CH53_3539 PF00672 HAMP domain CH53_3539 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_3539 PF02203 Tar ligand binding domain homologue CH53_354 PF13378 Enolase C-terminal domain-like CH53_3540 PF03705 CheR methyltransferase, all-alpha domain CH53_3540 PF01739 CheR methyltransferase, SAM binding domain CH53_3541 PF00072 Response regulator receiver domain CH53_3541 PF01339 CheB methylesterase CH53_3542 PF00072 Response regulator receiver domain CH53_3543 PF04344 Chemotaxis phosphatase, CheZ CH53_3544 PF01312 FlhB HrpN YscU SpaS Family CH53_3545 PF00771 FHIPEP family CH53_3547 PF06366 Flagellar protein FlhE CH53_3548 PF05130 FlgN protein CH53_3549 PF04316 Anti-sigma-28 factor, FlgM CH53_355 PF00378 Enoyl-CoA hydratase/isomerase CH53_3550 PF17656 FlgA N-terminal domain CH53_3550 PF13144 Chaperone for flagella basal body P-ring formation CH53_3551 PF00460 Flagella basal body rod protein CH53_3552 PF00460 Flagella basal body rod protein CH53_3552 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH53_3553 PF03963 Flagellar hook capping protein - N-terminal region CH53_3553 PF13861 FlgD Tudor-like domain CH53_3553 PF13860 FlgD Ig-like domain CH53_3554 PF00460 Flagella basal body rod protein CH53_3554 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH53_3554 PF07559 Flagellar basal body protein FlaE CH53_3555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH53_3555 PF00460 Flagella basal body rod protein CH53_3556 PF00460 Flagella basal body rod protein CH53_3556 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH53_3557 PF02107 Flagellar L-ring protein CH53_3558 PF02119 Flagellar P-ring protein CH53_3559 PF10135 Rod binding protein CH53_3559 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH53_356 PF12697 Alpha/beta hydrolase family CH53_3560 PF00460 Flagella basal body rod protein CH53_3560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH53_3561 PF00669 Bacterial flagellin N-terminal helical region CH53_3562 PF01311 Bacterial export proteins, family 1 CH53_3563 PF01313 Bacterial export proteins, family 3 CH53_3564 PF00813 FliP family CH53_3565 PF04347 Flagellar biosynthesis protein, FliO CH53_3566 PF16973 Flagellar motor switch protein FliN N-terminal CH53_3566 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH53_3567 PF02154 Flagellar motor switch protein FliM CH53_3567 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH53_3568 PF03748 Flagellar basal body-associated protein FliL CH53_3569 PF02120 Flagellar hook-length control protein FliK CH53_357 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_357 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_357 PF16582 Middle domain of thiamine pyrophosphate CH53_3570 PF02050 Flagellar FliJ protein CH53_3571 PF18269 T3SS EscN ATPase C-terminal domain CH53_3571 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH53_3572 PF02108 Flagellar assembly protein FliH CH53_3573 PF14842 FliG N-terminal domain CH53_3573 PF14841 FliG middle domain CH53_3573 PF01706 FliG C-terminal domain CH53_3574 PF08345 Flagellar M-ring protein C-terminal CH53_3574 PF01514 Secretory protein of YscJ/FliF family CH53_3575 PF02049 Flagellar hook-basal body complex protein FliE CH53_3576 PF12167 Arm DNA-binding domain CH53_3576 PF00589 Phage integrase family CH53_358 PF00425 chorismate binding enzyme CH53_3583 PF01757 Acyltransferase family CH53_3584 PF00730 HhH-GPD superfamily base excision DNA repair protein CH53_3585 PF01966 HD domain CH53_3586 PF12833 Helix-turn-helix domain CH53_3587 PF05400 Flagellar protein FliT CH53_3588 PF02561 Flagellar protein FliS CH53_3589 PF02465 Flagellar hook-associated protein 2 N-terminus CH53_3589 PF07196 Flagellin hook IN motif CH53_3589 PF07195 Flagellar hook-associated protein 2 C-terminus CH53_359 PF05957 Bacterial protein of unknown function (DUF883) CH53_3590 PF00669 Bacterial flagellin N-terminal helical region CH53_3590 PF00700 Bacterial flagellin C-terminal helical region CH53_3591 PF04539 Sigma-70 region 3 CH53_3591 PF04545 Sigma-70, region 4 CH53_3591 PF04542 Sigma-70 region 2 CH53_3592 PF02899 Phage integrase, N-terminal SAM-like domain CH53_3593 PF00291 Pyridoxal-phosphate dependent enzyme CH53_3598 PF01619 Proline dehydrogenase CH53_3598 PF14850 DNA-binding domain of Proline dehydrogenase CH53_3598 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH53_3598 PF00171 Aldehyde dehydrogenase family CH53_3599 PF00474 Sodium:solute symporter family CH53_36 PF07119 Protein of unknown function (DUF1375) CH53_360 PF00920 Dehydratase family CH53_3600 PF03239 Iron permease FTR1 family CH53_3601 PF09375 Imelysin CH53_3601 PF13473 Cupredoxin-like domain CH53_3602 PF04261 Dyp-type peroxidase family CH53_3603 PF03358 NADPH-dependent FMN reductase CH53_3605 PF01161 Phosphatidylethanolamine-binding protein CH53_3607 PF00324 Amino acid permease CH53_3609 PF00589 Phage integrase family CH53_361 PF03928 Haem-degrading CH53_3610 PF13185 GAF domain CH53_3610 PF00990 Diguanylate cyclase, GGDEF domain CH53_3615 PF02806 Alpha amylase, C-terminal all-beta domain CH53_3615 PF00128 Alpha amylase, catalytic domain CH53_3616 PF00672 HAMP domain CH53_3616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_3616 PF02203 Tar ligand binding domain homologue CH53_3618 PF06942 GlpM protein CH53_3619 PF10769 Protein of unknown function (DUF2594) CH53_362 PF07690 Major Facilitator Superfamily CH53_3620 PF00072 Response regulator receiver domain CH53_3620 PF00196 Bacterial regulatory proteins, luxR family CH53_3621 PF08459 UvrC Helix-hairpin-helix N-terminal CH53_3621 PF02151 UvrB/uvrC motif CH53_3621 PF01541 GIY-YIG catalytic domain CH53_3622 PF01066 CDP-alcohol phosphatidyltransferase CH53_363 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH53_363 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_3635 PF03354 Phage Terminase CH53_3637 PF06530 Phage antitermination protein Q CH53_364 PF00356 Bacterial regulatory proteins, lacI family CH53_3640 PF00561 alpha/beta hydrolase fold CH53_3642 PF06440 DNA polymerase III, theta subunit CH53_365 PF00106 short chain dehydrogenase CH53_3650 PF10946 Protein of unknown function DUF2625 CH53_3654 PF01638 HxlR-like helix-turn-helix CH53_3659 PF13408 Recombinase zinc beta ribbon domain CH53_3659 PF00239 Resolvase, N terminal domain CH53_3659 PF07508 Recombinase CH53_366 PF01202 Shikimate kinase CH53_367 PF04074 YhcH/YjgK/YiaL CH53_3670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_3670 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_3671 PF13954 PapC N-terminal domain CH53_3671 PF00577 Outer membrane usher protein CH53_3671 PF13953 PapC C-terminal domain CH53_3673 PF00419 Fimbrial protein CH53_3674 PF00196 Bacterial regulatory proteins, luxR family CH53_3677 PF00155 Aminotransferase class I and II CH53_3679 PF07690 Major Facilitator Superfamily CH53_368 PF06496 Protein of unknown function (DUF1097) CH53_3681 PF00196 Bacterial regulatory proteins, luxR family CH53_3681 PF00072 Response regulator receiver domain CH53_3683 PF07690 Major Facilitator Superfamily CH53_3684 PF00384 Molybdopterin oxidoreductase CH53_3684 PF14710 Respiratory nitrate reductase alpha N-terminal CH53_3684 PF01568 Molydopterin dinucleotide binding domain CH53_3685 PF14711 Respiratory nitrate reductase beta C-terminal CH53_3685 PF13247 4Fe-4S dicluster domain CH53_3686 PF02613 Nitrate reductase delta subunit CH53_3687 PF02665 Nitrate reductase gamma subunit CH53_3688 PF00324 Amino acid permease CH53_3689 PF03390 2-hydroxycarboxylate transporter family CH53_3690 PF00072 Response regulator receiver domain CH53_3691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3691 PF00989 PAS fold CH53_3691 PF17203 Single cache domain 3 CH53_3691 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH53_3692 PF00455 DeoR C terminal sensor domain CH53_3692 PF08220 DeoR-like helix-turn-helix domain CH53_3693 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH53_3693 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH53_3694 PF07005 Sugar-binding N-terminal domain CH53_3694 PF17042 Nucleotide-binding C-terminal domain CH53_3695 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_3696 PF01261 Xylose isomerase-like TIM barrel CH53_3698 PF00356 Bacterial regulatory proteins, lacI family CH53_3699 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH53_37 PF00535 Glycosyl transferase family 2 CH53_370 PF00361 Proton-conducting membrane transporter CH53_3700 PF02378 Phosphotransferase system, EIIC CH53_3701 PF00232 Glycosyl hydrolase family 1 CH53_3702 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH53_3704 PF03239 Iron permease FTR1 family CH53_3705 PF10634 Fe2+ transport protein CH53_3707 PF12704 MacB-like periplasmic core domain CH53_3707 PF02687 FtsX-like permease family CH53_3707 PF00005 ABC transporter CH53_3709 PF00005 ABC transporter CH53_3709 PF02687 FtsX-like permease family CH53_3709 PF12704 MacB-like periplasmic core domain CH53_371 PF00361 Proton-conducting membrane transporter CH53_3710 PF00578 AhpC/TSA family CH53_3712 PF03848 Tellurite resistance protein TehB CH53_3712 PF09313 Domain of unknown function (DUF1971) CH53_3713 PF03466 LysR substrate binding domain CH53_3713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3714 PF01411 tRNA synthetases class II (A) CH53_3714 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH53_3714 PF02272 DHHA1 domain CH53_3715 PF01321 Creatinase/Prolidase N-terminal domain CH53_3715 PF00557 Metallopeptidase family M24 CH53_3717 PF14883 Hypothetical glycosyl hydrolase family 13 CH53_3717 PF01522 Polysaccharide deacetylase CH53_3718 PF00535 Glycosyl transferase family 2 CH53_3719 PF13994 PgaD-like protein CH53_372 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH53_372 PF00361 Proton-conducting membrane transporter CH53_3722 PF02562 PhoH-like protein CH53_3723 PF01699 Sodium/calcium exchanger protein CH53_3725 PF07690 Major Facilitator Superfamily CH53_3726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3726 PF03466 LysR substrate binding domain CH53_3727 PF00672 HAMP domain CH53_3727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_3727 PF07730 Histidine kinase CH53_3727 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH53_3729 PF02322 Cytochrome bd terminal oxidase subunit II CH53_373 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH53_3730 PF01654 Cytochrome bd terminal oxidase subunit I CH53_3731 PF00392 Bacterial regulatory proteins, gntR family CH53_3731 PF00155 Aminotransferase class I and II CH53_3733 PF00202 Aminotransferase class-III CH53_3734 PF04958 Arginine N-succinyltransferase beta subunit CH53_3735 PF00171 Aldehyde dehydrogenase family CH53_3736 PF04996 Succinylarginine dihydrolase CH53_3737 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH53_3738 PF00267 Gram-negative porin CH53_374 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH53_3740 PF01979 Amidohydrolase family CH53_3741 PF00392 Bacterial regulatory proteins, gntR family CH53_3741 PF07702 UTRA domain CH53_3742 PF01979 Amidohydrolase family CH53_3744 PF13407 Periplasmic binding protein domain CH53_3745 PF00005 ABC transporter CH53_3746 PF02653 Branched-chain amino acid transport system / permease component CH53_3749 PF07690 Major Facilitator Superfamily CH53_375 PF12838 4Fe-4S dicluster domain CH53_3751 PF17926 Tetracyclin repressor-like, C-terminal domain CH53_3751 PF00440 Bacterial regulatory proteins, tetR family CH53_3752 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH53_3754 PF01476 LysM domain CH53_3754 PF01551 Peptidase family M23 CH53_3756 PF06071 Protein of unknown function (DUF933) CH53_3756 PF01926 50S ribosome-binding GTPase CH53_3758 PF01195 Peptidyl-tRNA hydrolase CH53_3759 PF10762 Protein of unknown function (DUF2583) CH53_376 PF00146 NADH dehydrogenase CH53_3760 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH53_3760 PF14572 Phosphoribosyl synthetase-associated domain CH53_3761 PF08544 GHMP kinases C terminal CH53_3761 PF00288 GHMP kinases N terminal domain CH53_3762 PF03550 Outer membrane lipoprotein LolB CH53_3763 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH53_3763 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH53_3763 PF01488 Shikimate / quinate 5-dehydrogenase CH53_3764 PF00472 RF-1 domain CH53_3764 PF03462 PCRF domain CH53_3765 PF17827 PrmC N-terminal domain CH53_3765 PF13847 Methyltransferase domain CH53_3766 PF04247 Invasion gene expression up-regulator, SirB CH53_3767 PF13369 Transglutaminase-like superfamily CH53_3768 PF00793 DAHP synthetase I family CH53_3769 PF01740 STAS domain CH53_3769 PF00916 Sulfate permease family CH53_377 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_377 PF00384 Molybdopterin oxidoreductase CH53_377 PF01568 Molydopterin dinucleotide binding domain CH53_377 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH53_3770 PF00990 Diguanylate cyclase, GGDEF domain CH53_3770 PF07694 5TMR of 5TMR-LYT CH53_3772 PF03009 Glycerophosphoryl diester phosphodiesterase family CH53_3774 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_3775 PF02811 PHP domain CH53_3776 PF02613 Nitrate reductase delta subunit CH53_3777 PF07273 Protein of unknown function (DUF1439) CH53_3778 PF07690 Major Facilitator Superfamily CH53_378 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH53_378 PF10531 SLBB domain CH53_378 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH53_3784 PF13302 Acetyltransferase (GNAT) domain CH53_3785 PF04337 Protein of unknown function, DUF480 CH53_3786 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH53_3787 PF03023 Lipid II flippase MurJ CH53_3788 PF03485 Arginyl tRNA synthetase N terminal domain CH53_3788 PF00750 tRNA synthetases class I (R) CH53_3788 PF05746 DALR anticodon binding domain CH53_3789 PF06185 YecM protein CH53_3790 PF03932 CutC family CH53_3791 PF08003 Protein of unknown function (DUF1698) CH53_3792 PF13649 Methyltransferase domain CH53_3793 PF01124 MAPEG family CH53_3794 PF01904 Protein of unknown function DUF72 CH53_3795 PF00857 Isochorismatase family CH53_3796 PF00152 tRNA synthetases class II (D, K and N) CH53_3796 PF02938 GAD domain CH53_3796 PF01336 OB-fold nucleic acid binding domain CH53_3798 PF00293 NUDIX domain CH53_3799 PF01709 Transcriptional regulator CH53_38 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH53_380 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH53_380 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH53_3800 PF02075 Crossover junction endodeoxyribonuclease RuvC CH53_3801 PF07499 RuvA, C-terminal domain CH53_3801 PF01330 RuvA N terminal domain CH53_3802 PF05491 RuvB C-terminal winged helix domain CH53_3802 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH53_3802 PF17864 RuvB AAA lid domain CH53_3803 PF00854 POT family CH53_3804 PF00950 ABC 3 transport family CH53_3805 PF00005 ABC transporter CH53_3806 PF01297 Zinc-uptake complex component A periplasmic CH53_3807 PF01551 Peptidase family M23 CH53_3807 PF08525 Opacity-associated protein A N-terminal motif CH53_3807 PF01476 LysM domain CH53_3808 PF03279 Bacterial lipid A biosynthesis acyltransferase CH53_3809 PF02887 Pyruvate kinase, alpha/beta domain CH53_3809 PF00224 Pyruvate kinase, barrel domain CH53_381 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH53_3810 PF01418 Helix-turn-helix domain, rpiR family CH53_3810 PF01380 SIS domain CH53_3811 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH53_3811 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH53_3812 PF01081 KDPG and KHG aldolase CH53_3813 PF00893 Small Multidrug Resistance protein CH53_3814 PF00893 Small Multidrug Resistance protein CH53_3815 PF01042 Endoribonuclease L-PSP CH53_3816 PF13307 Helicase C-terminal domain CH53_3816 PF04851 Type III restriction enzyme, res subunit CH53_3817 PF00814 Glycoprotease family CH53_3818 PF03843 Outer membrane lipoprotein Slp family CH53_3819 PF13193 AMP-binding enzyme C-terminal domain CH53_3819 PF00501 AMP-binding enzyme CH53_382 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH53_3820 PF00570 HRDC domain CH53_3820 PF01612 3'-5' exonuclease CH53_3821 PF03776 Septum formation topological specificity factor MinE CH53_3822 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH53_3823 PF03775 Septum formation inhibitor MinC, C-terminal domain CH53_3823 PF05209 Septum formation inhibitor MinC, N-terminal domain CH53_3825 PF05166 YcgL domain CH53_3826 PF13406 Transglycosylase SLT domain CH53_3827 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH53_3828 PF03692 Putative zinc- or iron-chelating domain CH53_383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_383 PF03466 LysR substrate binding domain CH53_3830 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH53_3830 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_3831 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH53_3831 PF17287 POTRA domain CH53_3831 PF08479 POTRA domain, ShlB-type CH53_3832 PF13332 Hemagglutinin repeat CH53_3832 PF05860 haemagglutination activity domain CH53_3833 PF13332 Hemagglutinin repeat CH53_3833 PF05860 haemagglutination activity domain CH53_3834 PF02600 Disulfide bond formation protein DsbB CH53_3835 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH53_3836 PF00392 Bacterial regulatory proteins, gntR family CH53_3836 PF07840 FadR C-terminal domain CH53_3837 PF04293 SpoVR like protein CH53_3838 PF01266 FAD dependent oxidoreductase CH53_3839 PF00842 Alanine racemase, C-terminal domain CH53_3839 PF01168 Alanine racemase, N-terminal domain CH53_384 PF00155 Aminotransferase class I and II CH53_3840 PF07690 Major Facilitator Superfamily CH53_3841 PF00563 EAL domain CH53_3841 PF13426 PAS domain CH53_3841 PF00990 Diguanylate cyclase, GGDEF domain CH53_3843 PF04285 Protein of unknown function (DUF444) CH53_3844 PF06798 PrkA serine protein kinase C-terminal domain CH53_3844 PF08298 PrkA AAA domain CH53_3845 PF06629 MltA-interacting protein MipA CH53_3846 PF01263 Aldose 1-epimerase CH53_3847 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH53_3847 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH53_3848 PF01641 SelR domain CH53_3849 PF07023 Protein of unknown function (DUF1315) CH53_3850 PF00857 Isochorismatase family CH53_3851 PF17763 Glutaminase/Asparaginase C-terminal domain CH53_3851 PF00710 Asparaginase, N-terminal CH53_3852 PF01343 Peptidase family S49 CH53_3853 PF00881 Nitroreductase family CH53_3854 PF00586 AIR synthase related protein, N-terminal domain CH53_3854 PF02769 AIR synthase related protein, C-terminal domain CH53_3855 PF01131 DNA topoisomerase CH53_3855 PF01751 Toprim domain CH53_3856 PF07383 Protein of unknown function (DUF1496) CH53_3857 PF00293 NUDIX domain CH53_3858 PF03372 Endonuclease/Exonuclease/phosphatase family CH53_3859 PF03466 LysR substrate binding domain CH53_3859 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3864 PF01842 ACT domain CH53_3864 PF00551 Formyl transferase CH53_3865 PF02810 SEC-C motif CH53_3866 PF01734 Patatin-like phospholipase CH53_3867 PF00072 Response regulator receiver domain CH53_3868 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH53_3868 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH53_3868 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH53_3869 PF00816 H-NS histone family CH53_387 PF02080 TrkA-C domain CH53_387 PF03600 Citrate transporter CH53_3870 PF00265 Thymidine kinase CH53_3871 PF00171 Aldehyde dehydrogenase family CH53_3871 PF00465 Iron-containing alcohol dehydrogenase CH53_3873 PF01914 MarC family integral membrane protein CH53_3874 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_3875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_3876 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3877 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3877 PF12911 N-terminal TM domain of oligopeptide transport permease C CH53_3878 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_3878 PF00005 ABC transporter CH53_3879 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_3879 PF00005 ABC transporter CH53_388 PF13419 Haloacid dehalogenase-like hydrolase CH53_3880 PF04269 Protein of unknown function, DUF440 CH53_3881 PF13091 PLD-like domain CH53_3881 PF13396 Phospholipase_D-nuclease N-terminal CH53_3885 PF03795 YCII-related domain CH53_3886 PF03544 Gram-negative bacterial TonB protein C-terminal CH53_3887 PF03061 Thioesterase superfamily CH53_3888 PF04279 Intracellular septation protein A CH53_389 PF03887 YfbU domain CH53_3891 PF03692 Putative zinc- or iron-chelating domain CH53_3892 PF03922 OmpW family CH53_3893 PF04972 BON domain CH53_3894 PF00290 Tryptophan synthase alpha chain CH53_3895 PF00291 Pyridoxal-phosphate dependent enzyme CH53_3896 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH53_3896 PF00218 Indole-3-glycerol phosphate synthase CH53_3897 PF02885 Glycosyl transferase family, helical bundle domain CH53_3897 PF00591 Glycosyl transferase family, a/b domain CH53_3898 PF00117 Glutamine amidotransferase class-I CH53_3899 PF00425 chorismate binding enzyme CH53_3899 PF04715 Anthranilate synthase component I, N terminal region CH53_39 PF01757 Acyltransferase family CH53_390 PF04217 Protein of unknown function, DUF412 CH53_3900 PF02811 PHP domain CH53_3901 PF01300 Telomere recombination CH53_3903 PF01479 S4 domain CH53_3903 PF00849 RNA pseudouridylate synthase CH53_3904 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH53_3905 PF00106 short chain dehydrogenase CH53_3906 PF01343 Peptidase family S49 CH53_3906 PF08496 Peptidase family S49 N-terminal CH53_3907 PF10692 Protein of unknown function (DUF2498) CH53_3908 PF08272 Topoisomerase I zinc-ribbon-like CH53_3908 PF01751 Toprim domain CH53_3908 PF01396 Topoisomerase DNA binding C4 zinc finger CH53_3908 PF01131 DNA topoisomerase CH53_3909 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3909 PF03466 LysR substrate binding domain CH53_391 PF00871 Acetokinase family CH53_3911 PF00330 Aconitase family (aconitate hydratase) CH53_3911 PF00694 Aconitase C-terminal domain CH53_3912 PF00925 GTP cyclohydrolase II CH53_3913 PF01569 PAP2 superfamily CH53_3914 PF06305 Lipopolysaccharide assembly protein A domain CH53_3915 PF18073 Rubredoxin metal binding domain CH53_3917 PF07338 Protein of unknown function (DUF1471) CH53_3918 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH53_3919 PF01253 Translation initiation factor SUI1 CH53_392 PF01515 Phosphate acetyl/butaryl transferase CH53_392 PF07085 DRTGG domain CH53_3920 PF05433 Glycine zipper 2TM domain CH53_3921 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_3923 PF00455 DeoR C terminal sensor domain CH53_3923 PF08220 DeoR-like helix-turn-helix domain CH53_3924 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH53_3925 PF04328 Selenoprotein, putative CH53_3926 PF13722 5TM C-terminal transporter carbon starvation CstA CH53_3926 PF02554 Carbon starvation protein CstA CH53_3927 PF08206 Ribonuclease B OB domain CH53_3927 PF00575 S1 RNA binding domain CH53_3927 PF00773 RNB domain CH53_3928 PF00384 Molybdopterin oxidoreductase CH53_3929 PF00730 HhH-GPD superfamily base excision DNA repair protein CH53_3929 PF10576 Iron-sulfur binding domain of endonuclease III CH53_3929 PF00633 Helix-hairpin-helix motif CH53_393 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_393 PF00356 Bacterial regulatory proteins, lacI family CH53_3930 PF02508 Rnf-Nqr subunit, membrane protein CH53_3931 PF04205 FMN-binding domain CH53_3932 PF03116 NQR2, RnfD, RnfE family CH53_3933 PF06445 GyrI-like small molecule binding domain CH53_3933 PF12833 Helix-turn-helix domain CH53_3934 PF13375 RnfC Barrel sandwich hybrid domain CH53_3934 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH53_3934 PF13237 4Fe-4S dicluster domain CH53_3934 PF10531 SLBB domain CH53_3935 PF04060 Putative Fe-S cluster CH53_3936 PF02508 Rnf-Nqr subunit, membrane protein CH53_3937 PF10754 Protein of unknown function (DUF2569) CH53_3938 PF01268 Formate--tetrahydrofolate ligase CH53_3939 PF00005 ABC transporter CH53_3939 PF03412 Peptidase C39 family CH53_3939 PF00664 ABC transporter transmembrane region CH53_394 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH53_3941 PF00664 ABC transporter transmembrane region CH53_3941 PF03412 Peptidase C39 family CH53_3941 PF00005 ABC transporter CH53_3942 PF02463 RecF/RecN/SMC N terminal domain CH53_3943 PF11762 L-arabinose isomerase C-terminal domain CH53_3943 PF02610 L-arabinose isomerase CH53_3944 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_3945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_3946 PF00005 ABC transporter CH53_3947 PF02653 Branched-chain amino acid transport system / permease component CH53_3948 PF12833 Helix-turn-helix domain CH53_3948 PF02311 AraC-like ligand binding domain CH53_3949 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH53_3949 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH53_3950 PF13593 SBF-like CPA transporter family (DUF4137) CH53_3951 PF00962 Adenosine/AMP deaminase CH53_3952 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_3952 PF00367 phosphotransferase system, EIIB CH53_3952 PF02378 Phosphotransferase system, EIIC CH53_3953 PF13378 Enolase C-terminal domain-like CH53_3953 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH53_3955 PF00155 Aminotransferase class I and II CH53_3956 PF02378 Phosphotransferase system, EIIC CH53_3956 PF00367 phosphotransferase system, EIIB CH53_3957 PF00356 Bacterial regulatory proteins, lacI family CH53_3957 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH53_3958 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_3959 PF06097 Bacterial protein of unknown function (DUF945) CH53_396 PF03611 PTS system sugar-specific permease component CH53_3960 PF01238 Phosphomannose isomerase type I CH53_3961 PF00206 Lyase CH53_3961 PF10415 Fumarase C C-terminus CH53_3962 PF05472 DNA replication terminus site-binding protein (Ter protein) CH53_3965 PF07690 Major Facilitator Superfamily CH53_3966 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_3966 PF03466 LysR substrate binding domain CH53_3967 PF00480 ROK family CH53_3969 PF00654 Voltage gated chloride channel CH53_397 PF00293 NUDIX domain CH53_3970 PF06649 Protein of unknown function (DUF1161) CH53_3971 PF06932 Protein of unknown function (DUF1283) CH53_3972 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH53_3974 PF00106 short chain dehydrogenase CH53_3975 PF00132 Bacterial transferase hexapeptide (six repeats) CH53_3978 PF00155 Aminotransferase class I and II CH53_3978 PF00392 Bacterial regulatory proteins, gntR family CH53_398 PF12850 Calcineurin-like phosphoesterase superfamily domain CH53_3981 PF03960 ArsC family CH53_3982 PF02040 Arsenical pump membrane protein CH53_3983 PF02374 Anion-transporting ATPase CH53_3984 PF06953 Arsenical resistance operon trans-acting repressor ArsD CH53_3985 PF01022 Bacterial regulatory protein, arsR family CH53_3987 PF02798 Glutathione S-transferase, N-terminal domain CH53_3988 PF01590 GAF domain CH53_3988 PF00158 Sigma-54 interaction domain CH53_3989 PF00258 Flavodoxin CH53_3989 PF00301 Rubredoxin CH53_3989 PF00753 Metallo-beta-lactamase superfamily CH53_399 PF00563 EAL domain CH53_3990 PF18113 Rubredoxin binding C-terminal domain CH53_3990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_3992 PF01037 Lrp/AsnC ligand binding domain CH53_3993 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3994 PF00528 Binding-protein-dependent transport system inner membrane component CH53_3995 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_3997 PF02424 ApbE family CH53_3999 PF05958 tRNA (Uracil-5-)-methyltransferase CH53_4 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_4 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_400 PF08338 Domain of unknown function (DUF1731) CH53_400 PF01370 NAD dependent epimerase/dehydratase family CH53_4000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4000 PF03466 LysR substrate binding domain CH53_4001 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH53_4001 PF01048 Phosphorylase superfamily CH53_4006 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_4006 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_4006 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_4007 PF01842 ACT domain CH53_4008 PF01042 Endoribonuclease L-PSP CH53_4009 PF13419 Haloacid dehalogenase-like hydrolase CH53_401 PF00005 ABC transporter CH53_4014 PF07690 Major Facilitator Superfamily CH53_4015 PF00294 pfkB family carbohydrate kinase CH53_4016 PF00245 Alkaline phosphatase CH53_4018 PF03466 LysR substrate binding domain CH53_4018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4019 PF06445 GyrI-like small molecule binding domain CH53_402 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4022 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH53_4022 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH53_4023 PF00027 Cyclic nucleotide-binding domain CH53_4023 PF13545 Crp-like helix-turn-helix domain CH53_4024 PF00582 Universal stress protein family CH53_4025 PF02233 NAD(P) transhydrogenase beta subunit CH53_4026 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH53_4026 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH53_4026 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH53_4027 PF07338 Protein of unknown function (DUF1471) CH53_4028 PF13520 Amino acid permease CH53_403 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4030 PF00072 Response regulator receiver domain CH53_4030 PF00486 Transcriptional regulatory protein, C terminal CH53_4031 PF00512 His Kinase A (phospho-acceptor) domain CH53_4031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_4031 PF00672 HAMP domain CH53_4032 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH53_4034 PF00089 Trypsin CH53_4037 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH53_4037 PF04408 Helicase associated domain (HA2) CH53_4037 PF11898 Domain of unknown function (DUF3418) CH53_4037 PF00270 DEAD/DEAH box helicase CH53_4037 PF00271 Helicase conserved C-terminal domain CH53_4038 PF02525 Flavodoxin-like fold CH53_4039 PF07027 Protein of unknown function (DUF1318) CH53_404 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_4040 PF13617 YnbE-like lipoprotein CH53_4041 PF11739 Dicarboxylate transport CH53_4042 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_4042 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH53_4043 PF03891 Domain of unknown function (DUF333) CH53_4044 PF02308 MgtC family CH53_4045 PF00893 Small Multidrug Resistance protein CH53_4046 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH53_4046 PF10371 Domain of unknown function CH53_4046 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH53_4046 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_4046 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH53_4047 PF01171 PP-loop family CH53_4048 PF01544 CorA-like Mg2+ transporter protein CH53_4049 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_405 PF02441 Flavoprotein CH53_4050 PF13378 Enolase C-terminal domain-like CH53_4050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH53_4051 PF00246 Zinc carboxypeptidase CH53_4052 PF08534 Redoxin CH53_4053 PF18024 Helix-turn-helix domain CH53_4053 PF00158 Sigma-54 interaction domain CH53_4056 PF05128 Domain of unknown function (DUF697) CH53_4057 PF04317 YcjX-like family, DUF463 CH53_4059 PF04024 PspC domain CH53_406 PF00156 Phosphoribosyl transferase domain CH53_4060 PF06667 Phage shock protein B CH53_4061 PF04012 PspA/IM30 family CH53_4062 PF02954 Bacterial regulatory protein, Fis family CH53_4062 PF00158 Sigma-54 interaction domain CH53_4064 PF02917 Pertussis toxin, subunit 1 CH53_4066 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_4067 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4068 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4068 PF12911 N-terminal TM domain of oligopeptide transport permease C CH53_4069 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_4069 PF00005 ABC transporter CH53_407 PF02674 Colicin V production protein CH53_4070 PF00005 ABC transporter CH53_4072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4072 PF03466 LysR substrate binding domain CH53_4073 PF00854 POT family CH53_4075 PF04893 Yip1 domain CH53_4076 PF11656 YjbD family (DUF3811) CH53_4077 PF02798 Glutathione S-transferase, N-terminal domain CH53_4077 PF00043 Glutathione S-transferase, C-terminal domain CH53_4078 PF08543 Phosphomethylpyrimidine kinase CH53_4079 PF01479 S4 domain CH53_4079 PF00579 tRNA synthetases class I (W and Y) CH53_408 PF05036 Sporulation related domain CH53_4080 PF01243 Pyridoxamine 5'-phosphate oxidase CH53_4080 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH53_4081 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH53_4082 PF03702 Anhydro-N-acetylmuramic acid kinase CH53_4083 PF05433 Glycine zipper 2TM domain CH53_4084 PF01047 MarR family CH53_4085 PF07869 Protein of unknown function (DUF1656) CH53_4086 PF00529 HlyD membrane-fusion protein of T1SS CH53_4086 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_4087 PF04632 Fusaric acid resistance protein family CH53_4088 PF00248 Aldo/keto reductase family CH53_4089 PF06945 Protein of unknown function (DUF1289) CH53_409 PF08245 Mur ligase middle domain CH53_409 PF02875 Mur ligase family, glutamate ligase domain CH53_4090 PF08019 Phosphoethanolamine transferase EptA/EptB CH53_4090 PF00884 Sulfatase CH53_4091 PF16925 Tetracyclin repressor-like, C-terminal domain CH53_4091 PF00440 Bacterial regulatory proteins, tetR family CH53_4092 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH53_4093 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH53_4094 PF00929 Exonuclease CH53_4095 PF00462 Glutaredoxin CH53_4096 PF00877 NlpC/P60 family CH53_4097 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH53_4097 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH53_4099 PF00356 Bacterial regulatory proteins, lacI family CH53_41 PF02080 TrkA-C domain CH53_41 PF00999 Sodium/hydrogen exchanger family CH53_41 PF03471 Transporter associated domain CH53_410 PF17848 Acetyl-coA carboxylase zinc finger domain CH53_410 PF01039 Carboxyl transferase domain CH53_4100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4100 PF03466 LysR substrate binding domain CH53_4101 PF07690 Major Facilitator Superfamily CH53_4103 PF00677 Lumazine binding domain CH53_4104 PF01554 MatE CH53_4108 PF02887 Pyruvate kinase, alpha/beta domain CH53_4108 PF00224 Pyruvate kinase, barrel domain CH53_4109 PF04728 Lipoprotein leucine-zipper CH53_411 PF09335 SNARE associated Golgi protein CH53_4110 PF17969 L,D-transpeptidase C-terminal domain CH53_4110 PF01476 LysM domain CH53_4110 PF03734 L,D-transpeptidase catalytic domain CH53_4111 PF02657 Fe-S metabolism associated domain CH53_4112 PF00266 Aminotransferase class-V CH53_4113 PF01458 Uncharacterized protein family (UPF0051) CH53_4114 PF00005 ABC transporter CH53_4115 PF01458 Uncharacterized protein family (UPF0051) CH53_4116 PF01521 Iron-sulphur cluster biosynthesis CH53_4117 PF03061 Thioesterase superfamily CH53_4118 PF13183 4Fe-4S dicluster domain CH53_4118 PF01565 FAD binding domain CH53_4118 PF02913 FAD linked oxidases, C-terminal domain CH53_4119 PF01594 AI-2E family transporter CH53_412 PF01416 tRNA pseudouridine synthase CH53_4120 PF00391 PEP-utilising enzyme, mobile domain CH53_4120 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH53_4120 PF02896 PEP-utilising enzyme, TIM barrel domain CH53_4121 PF03618 Kinase/pyrophosphorylase CH53_4122 PF00793 DAHP synthetase I family CH53_4123 PF07715 TonB-dependent Receptor Plug Domain CH53_4123 PF00593 TonB dependent receptor CH53_4124 PF05171 Haemin-degrading HemS.ChuX domain CH53_4125 PF01497 Periplasmic binding protein CH53_4126 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH53_4127 PF03099 Biotin/lipoate A/B protein ligase family CH53_4127 PF10437 Bacterial lipoate protein ligase C-terminus CH53_4128 PF00877 NlpC/P60 family CH53_413 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH53_413 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH53_4130 PF00892 EamA-like transporter family CH53_4131 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH53_4132 PF01522 Polysaccharide deacetylase CH53_4133 PF01370 NAD dependent epimerase/dehydratase family CH53_4133 PF02911 Formyl transferase, C-terminal domain CH53_4133 PF00551 Formyl transferase CH53_4134 PF00535 Glycosyl transferase family 2 CH53_4135 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH53_4136 PF00005 ABC transporter CH53_4137 PF00255 Glutathione peroxidase CH53_4138 PF01032 FecCD transport family CH53_414 PF11890 Domain of unknown function (DUF3410) CH53_414 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH53_414 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH53_4141 PF00216 Bacterial DNA-binding protein CH53_4142 PF03483 B3/4 domain CH53_4142 PF01588 Putative tRNA binding domain CH53_4142 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH53_4142 PF03147 Ferredoxin-fold anticodon binding domain CH53_4142 PF03484 tRNA synthetase B5 domain CH53_4143 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH53_4143 PF01409 tRNA synthetases class II core domain (F) CH53_4144 PF00453 Ribosomal protein L20 CH53_4145 PF01632 Ribosomal protein L35 CH53_4146 PF05198 Translation initiation factor IF-3, N-terminal domain CH53_4146 PF00707 Translation initiation factor IF-3, C-terminal domain CH53_4147 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH53_4147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH53_4147 PF02824 TGS domain CH53_4147 PF03129 Anticodon binding domain CH53_4155 PF01580 FtsK/SpoIIIE family CH53_4155 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH53_4155 PF17854 FtsK alpha domain CH53_4155 PF09397 Ftsk gamma domain CH53_418 PF00155 Aminotransferase class I and II CH53_4182 PF10549 ORF11CD3 domain CH53_4182 PF09669 Phage regulatory protein Rha (Phage_pRha) CH53_4185 PF00959 Phage lysozyme CH53_4188 PF05866 Endodeoxyribonuclease RusA CH53_4189 PF07102 Protein of unknown function (DUF1364) CH53_419 PF00578 AhpC/TSA family CH53_4196 PF00772 DnaB-like helicase N terminal domain CH53_4196 PF03796 DnaB-like helicase C terminal domain CH53_42 PF03466 LysR substrate binding domain CH53_42 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4201 PF01381 Helix-turn-helix CH53_4201 PF00717 Peptidase S24-like CH53_421 PF11412 Disulphide bond corrector protein DsbC CH53_421 PF02683 Cytochrome C biogenesis protein transmembrane region CH53_4212 PF04098 Rad52/22 family double-strand break repair protein CH53_4213 PF00436 Single-strand binding protein family CH53_4224 PF05063 MT-A70 CH53_4226 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_4226 PF07724 AAA domain (Cdc48 subfamily) CH53_4226 PF06689 ClpX C4-type zinc finger CH53_4231 PF13619 KTSC domain CH53_4232 PF04474 Protein of unknown function (DUF554) CH53_4233 PF09339 IclR helix-turn-helix domain CH53_4233 PF01614 Bacterial transcriptional regulator CH53_4234 PF00005 ABC transporter CH53_4235 PF02653 Branched-chain amino acid transport system / permease component CH53_4238 PF02615 Malate/L-lactate dehydrogenase CH53_4239 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_4239 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_424 PF03600 Citrate transporter CH53_4240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH53_4241 PF01261 Xylose isomerase-like TIM barrel CH53_4245 PF01914 MarC family integral membrane protein CH53_4246 PF01464 Transglycosylase SLT domain CH53_4247 PF01297 Zinc-uptake complex component A periplasmic CH53_4248 PF00005 ABC transporter CH53_4249 PF00950 ABC 3 transport family CH53_425 PF00328 Histidine phosphatase superfamily (branch 2) CH53_4250 PF00950 ABC 3 transport family CH53_4252 PF01642 Methylmalonyl-CoA mutase CH53_4252 PF02310 B12 binding domain CH53_4254 PF00378 Enoyl-CoA hydratase/isomerase CH53_4255 PF03466 LysR substrate binding domain CH53_4255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4256 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CH53_4256 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CH53_4257 PF14002 YniB-like protein CH53_4258 PF13419 Haloacid dehalogenase-like hydrolase CH53_4259 PF07883 Cupin domain CH53_426 PF01177 Asp/Glu/Hydantoin racemase CH53_4260 PF04962 KduI/IolB family CH53_4262 PF06917 Periplasmic pectate lyase CH53_4263 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4264 PF00528 Binding-protein-dependent transport system inner membrane component CH53_4265 PF00005 ABC transporter CH53_4265 PF03459 TOBE domain CH53_4265 PF17912 MalK OB fold domain CH53_4267 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH53_4268 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH53_427 PF00072 Response regulator receiver domain CH53_427 PF00990 Diguanylate cyclase, GGDEF domain CH53_4270 PF01510 N-acetylmuramoyl-L-alanine amidase CH53_4271 PF09339 IclR helix-turn-helix domain CH53_4271 PF01614 Bacterial transcriptional regulator CH53_4272 PF14583 Oligogalacturonate lyase CH53_4273 PF07690 Major Facilitator Superfamily CH53_4274 PF01435 Peptidase family M48 CH53_4275 PF03572 Peptidase family S41 CH53_4275 PF17804 Tail specific protease N-terminal domain CH53_4275 PF00595 PDZ domain CH53_4275 PF11818 C-terminal domain of tail specific protease (DUF3340) CH53_4276 PF17516 ProQ C-terminal domain CH53_4276 PF04352 ProQ/FINO family CH53_4277 PF13185 GAF domain CH53_4278 PF04403 Paraquat-inducible protein A CH53_4279 PF02470 MlaD protein CH53_428 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_428 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_4280 PF03466 LysR substrate binding domain CH53_4280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_4282 PF01590 GAF domain CH53_4282 PF00990 Diguanylate cyclase, GGDEF domain CH53_4282 PF00360 Phytochrome region CH53_4282 PF00563 EAL domain CH53_4283 PF07351 Protein of unknown function (DUF1480) CH53_429 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH53_429 PF01266 FAD dependent oxidoreductase CH53_4290 PF14834 Glutathione S-transferase, C-terminal domain CH53_4290 PF02798 Glutathione S-transferase, N-terminal domain CH53_4294 PF00892 EamA-like transporter family CH53_4296 PF00849 RNA pseudouridylate synthase CH53_4296 PF01479 S4 domain CH53_4297 PF00924 Mechanosensitive ion channel CH53_4298 PF10753 Toxin GhoT_OrtT CH53_4299 PF00582 Universal stress protein family CH53_430 PF08891 YfcL protein CH53_4305 PF12792 CSS motif domain associated with EAL CH53_4305 PF00563 EAL domain CH53_431 PF04315 Elongation factor P hydroxylase CH53_4310 PF01797 Transposase IS200 like CH53_4316 PF01757 Acyltransferase family CH53_4317 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CH53_432 PF01925 Sulfite exporter TauE/SafE CH53_4324 PF00183 Hsp90 protein CH53_433 PF03411 Penicillin-insensitive murein endopeptidase CH53_4334 PF10709 Protein of unknown function (DUF2511) CH53_4335 PF05425 Copper resistance protein D CH53_4336 PF04234 CopC domain CH53_4337 PF00210 Ferritin-like domain CH53_4338 PF06440 DNA polymerase III, theta subunit CH53_4339 PF00561 alpha/beta hydrolase fold CH53_434 PF01264 Chorismate synthase CH53_4341 PF00929 Exonuclease CH53_4342 PF00326 Prolyl oligopeptidase family CH53_4342 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH53_4343 PF13995 YebF-like protein CH53_4345 PF07130 YebG protein CH53_4346 PF03880 DbpA RNA binding domain CH53_4346 PF00270 DEAD/DEAH box helicase CH53_4346 PF00271 Helicase conserved C-terminal domain CH53_4347 PF02222 ATP-grasp domain CH53_4348 PF03701 Uncharacterised protein family (UPF0181) CH53_4349 PF04715 Anthranilate synthase component I, N terminal region CH53_4349 PF00425 chorismate binding enzyme CH53_435 PF05175 Methyltransferase small domain CH53_4350 PF00293 NUDIX domain CH53_4351 PF03315 Serine dehydratase beta chain CH53_4351 PF03313 Serine dehydratase alpha chain CH53_4352 PF03471 Transporter associated domain CH53_4352 PF03741 Integral membrane protein TerC family CH53_4353 PF03610 PTS system fructose IIA component CH53_4353 PF03830 PTS system sorbose subfamily IIB component CH53_4354 PF03609 PTS system sorbose-specific iic component CH53_4355 PF03613 PTS system mannose/fructose/sorbose family IID component CH53_4356 PF06173 Protein of unknown function (DUF986) CH53_4357 PF02659 Putative manganese efflux pump CH53_4358 PF07715 TonB-dependent Receptor Plug Domain CH53_4358 PF00593 TonB dependent receptor CH53_4359 PF00563 EAL domain CH53_4359 PF05231 MASE1 CH53_4359 PF08447 PAS fold CH53_4359 PF08448 PAS fold CH53_4359 PF13426 PAS domain CH53_4359 PF00990 Diguanylate cyclase, GGDEF domain CH53_436 PF01713 Smr domain CH53_4361 PF13847 Methyltransferase domain CH53_4362 PF03717 Penicillin-binding Protein dimerisation domain CH53_4362 PF00905 Penicillin binding protein transpeptidase domain CH53_4364 PF00313 'Cold-shock' DNA-binding domain CH53_4365 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH53_4366 PF00324 Amino acid permease CH53_4369 PF13974 YebO-like protein CH53_437 PF00300 Histidine phosphatase superfamily (branch 1) CH53_4370 PF13996 YobH-like protein CH53_4371 PF10964 Protein of unknown function (DUF2766) CH53_4373 PF12833 Helix-turn-helix domain CH53_4375 PF13520 Amino acid permease CH53_4377 PF00664 ABC transporter transmembrane region CH53_4377 PF00005 ABC transporter CH53_4379 PF00563 EAL domain CH53_4379 PF00360 Phytochrome region CH53_4379 PF01590 GAF domain CH53_4379 PF00990 Diguanylate cyclase, GGDEF domain CH53_438 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH53_438 PF00378 Enoyl-CoA hydratase/isomerase CH53_438 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH53_4381 PF06411 HdeA/HdeB family CH53_4382 PF07007 Lysozyme inhibitor LprI CH53_4384 PF00892 EamA-like transporter family CH53_4387 PF01638 HxlR-like helix-turn-helix CH53_4388 PF05368 NmrA-like family CH53_4389 PF01053 Cys/Met metabolism PLP-dependent enzyme CH53_439 PF00108 Thiolase, N-terminal domain CH53_439 PF02803 Thiolase, C-terminal domain CH53_4390 PF00717 Peptidase S24-like CH53_4391 PF13438 Domain of unknown function (DUF4113) CH53_4391 PF11798 IMS family HHH motif CH53_4391 PF00817 impB/mucB/samB family CH53_4391 PF11799 impB/mucB/samB family C-terminal domain CH53_4393 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH53_4393 PF08447 PAS fold CH53_4394 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CH53_4394 PF18416 N-acetylglucosamine binding protein domain 2 CH53_4399 PF00180 Isocitrate/isopropylmalate dehydrogenase CH53_44 PF03472 Autoinducer binding domain CH53_44 PF00196 Bacterial regulatory proteins, luxR family CH53_440 PF04175 Protein of unknown function (DUF406) CH53_4400 PF00849 RNA pseudouridylate synthase CH53_4401 PF00293 NUDIX domain CH53_4403 PF04356 Protein of unknown function (DUF489) CH53_4404 PF00206 Lyase CH53_4404 PF08328 Adenylosuccinate lyase C-terminal CH53_4406 PF00486 Transcriptional regulatory protein, C terminal CH53_4406 PF00072 Response regulator receiver domain CH53_4407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_4407 PF08918 PhoQ Sensor CH53_4408 PF08007 Cupin superfamily protein CH53_4409 PF07687 Peptidase dimerisation domain CH53_4409 PF01546 Peptidase family M20/M25/M40 CH53_441 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH53_4410 PF02146 Sir2 family CH53_4411 PF00480 ROK family CH53_4412 PF12704 MacB-like periplasmic core domain CH53_4412 PF02687 FtsX-like permease family CH53_4413 PF00005 ABC transporter CH53_4414 PF12704 MacB-like periplasmic core domain CH53_4414 PF02687 FtsX-like permease family CH53_4415 PF00270 DEAD/DEAH box helicase CH53_4415 PF00271 Helicase conserved C-terminal domain CH53_4415 PF02559 CarD-like/TRCF domain CH53_4415 PF03461 TRCF domain CH53_4415 PF17757 UvrB interaction domain CH53_4416 PF05433 Glycine zipper 2TM domain CH53_4417 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_4418 PF05728 Uncharacterised protein family (UPF0227) CH53_4419 PF00933 Glycosyl hydrolase family 3 N terminal domain CH53_442 PF04333 MlaA lipoprotein CH53_4420 PF01636 Phosphotransferase enzyme family CH53_4421 PF13036 Peptidoglycan-synthase activator LpoB CH53_4421 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH53_4422 PF07233 Protein of unknown function (DUF1425) CH53_4423 PF01230 HIT domain CH53_4424 PF02378 Phosphotransferase system, EIIC CH53_4424 PF00367 phosphotransferase system, EIIB CH53_4425 PF01026 TatD related DNase CH53_4426 PF09115 DNA polymerase III, delta subunit, C terminal CH53_443 PF03918 Cytochrome C biogenesis protein CH53_444 PF03918 Cytochrome C biogenesis protein CH53_445 PF08534 Redoxin CH53_446 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH53_446 PF01578 Cytochrome C assembly protein CH53_447 PF03100 CcmE CH53_448 PF04995 Heme exporter protein D (CcmD) CH53_449 PF01578 Cytochrome C assembly protein CH53_45 PF00765 Autoinducer synthase CH53_450 PF03379 CcmB protein CH53_451 PF00005 ABC transporter CH53_453 PF08274 PhnA Zinc-Ribbon CH53_453 PF03831 PhnA domain CH53_455 PF13356 Arm DNA-binding domain CH53_455 PF14659 Phage integrase, N-terminal SAM-like domain CH53_455 PF00589 Phage integrase family CH53_46 PF04960 Glutaminase CH53_462 PF03551 Transcriptional regulator PadR-like family CH53_464 PF00232 Glycosyl hydrolase family 1 CH53_465 PF02378 Phosphotransferase system, EIIC CH53_465 PF00367 phosphotransferase system, EIIB CH53_466 PF00356 Bacterial regulatory proteins, lacI family CH53_468 PF04264 YceI-like domain CH53_469 PF01292 Prokaryotic cytochrome b561 CH53_47 PF13520 Amino acid permease CH53_471 PF01053 Cys/Met metabolism PLP-dependent enzyme CH53_472 PF03313 Serine dehydratase alpha chain CH53_476 PF00005 ABC transporter CH53_477 PF02405 Permease MlaE CH53_478 PF07690 Major Facilitator Superfamily CH53_48 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH53_480 PF07969 Amidohydrolase family CH53_481 PF00324 Amino acid permease CH53_482 PF13406 Transglycosylase SLT domain CH53_484 PF00528 Binding-protein-dependent transport system inner membrane component CH53_485 PF00005 ABC transporter CH53_487 PF04966 Carbohydrate-selective porin, OprB family CH53_488 PF00232 Glycosyl hydrolase family 1 CH53_489 PF02378 Phosphotransferase system, EIIC CH53_489 PF00367 phosphotransferase system, EIIB CH53_489 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_490 PF00874 PRD domain CH53_490 PF03123 CAT RNA binding domain CH53_491 PF01568 Molydopterin dinucleotide binding domain CH53_491 PF00384 Molybdopterin oxidoreductase CH53_491 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_492 PF12800 4Fe-4S binding domain CH53_492 PF13247 4Fe-4S dicluster domain CH53_493 PF04976 DMSO reductase anchor subunit (DmsC) CH53_494 PF02613 Nitrate reductase delta subunit CH53_497 PF01292 Prokaryotic cytochrome b561 CH53_498 PF00155 Aminotransferase class I and II CH53_5 PF00550 Phosphopantetheine attachment site CH53_500 PF07350 Protein of unknown function (DUF1479) CH53_501 PF06580 Histidine kinase CH53_501 PF07694 5TMR of 5TMR-LYT CH53_501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_502 PF00072 Response regulator receiver domain CH53_502 PF04397 LytTr DNA-binding domain CH53_503 PF07690 Major Facilitator Superfamily CH53_504 PF02685 Glucokinase CH53_506 PF03466 LysR substrate binding domain CH53_506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_507 PF00248 Aldo/keto reductase family CH53_509 PF01566 Natural resistance-associated macrophage protein CH53_510 PF07662 Na+ dependent nucleoside transporter C-terminus CH53_510 PF01773 Na+ dependent nucleoside transporter N-terminus CH53_510 PF07670 Nucleoside recognition CH53_515 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH53_52 PF11924 Inverse autotransporter, beta-domain CH53_52 PF02369 Bacterial Ig-like domain (group 1) CH53_52 PF09134 Invasin, domain 3 CH53_520 PF12843 Putative quorum-sensing-regulated virulence factor CH53_521 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH53_521 PF03120 NAD-dependent DNA ligase OB-fold domain CH53_521 PF12826 Helix-hairpin-helix motif CH53_521 PF00533 BRCA1 C Terminus (BRCT) domain CH53_521 PF01653 NAD-dependent DNA ligase adenylation domain CH53_522 PF04354 ZipA, C-terminal FtsZ-binding domain CH53_524 PF00291 Pyridoxal-phosphate dependent enzyme CH53_525 PF00381 PTS HPr component phosphorylation site CH53_526 PF05524 PEP-utilising enzyme, N-terminal CH53_526 PF00391 PEP-utilising enzyme, mobile domain CH53_526 PF02896 PEP-utilising enzyme, TIM barrel domain CH53_527 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH53_528 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_528 PF00512 His Kinase A (phospho-acceptor) domain CH53_528 PF00672 HAMP domain CH53_528 PF16527 Two-component sensor protein CpxA, periplasmic domain CH53_529 PF00072 Response regulator receiver domain CH53_529 PF00486 Transcriptional regulatory protein, C terminal CH53_530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_531 PF12704 MacB-like periplasmic core domain CH53_531 PF02687 FtsX-like permease family CH53_531 PF00005 ABC transporter CH53_532 PF01061 ABC-2 type transporter CH53_533 PF00005 ABC transporter CH53_536 PF05159 Capsule polysaccharide biosynthesis protein CH53_537 PF05159 Capsule polysaccharide biosynthesis protein CH53_538 PF10531 SLBB domain CH53_538 PF02563 Polysaccharide biosynthesis/export protein CH53_540 PF00291 Pyridoxal-phosphate dependent enzyme CH53_541 PF00005 ABC transporter CH53_542 PF00528 Binding-protein-dependent transport system inner membrane component CH53_543 PF00528 Binding-protein-dependent transport system inner membrane component CH53_545 PF04261 Dyp-type peroxidase family CH53_546 PF06572 Protein of unknown function (DUF1131) CH53_547 PF04076 Bacterial OB fold (BOF) protein CH53_548 PF00583 Acetyltransferase (GNAT) family CH53_549 PF01218 Coproporphyrinogen III oxidase CH53_550 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH53_551 PF01515 Phosphate acetyl/butaryl transferase CH53_551 PF03949 Malic enzyme, NAD binding domain CH53_551 PF00390 Malic enzyme, N-terminal domain CH53_552 PF00293 NUDIX domain CH53_553 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH53_555 PF03264 NapC/NirT cytochrome c family, N-terminal region CH53_556 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH53_557 PF01568 Molydopterin dinucleotide binding domain CH53_557 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH53_557 PF00384 Molybdopterin oxidoreductase CH53_557 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_558 PF03927 NapD protein CH53_559 PF00037 4Fe-4S binding domain CH53_559 PF12800 4Fe-4S binding domain CH53_559 PF13187 4Fe-4S dicluster domain CH53_56 PF13953 PapC C-terminal domain CH53_56 PF00577 Outer membrane usher protein CH53_56 PF13954 PapC N-terminal domain CH53_560 PF00072 Response regulator receiver domain CH53_560 PF00196 Bacterial regulatory proteins, luxR family CH53_562 PF00873 AcrB/AcrD/AcrF family CH53_564 PF03960 ArsC family CH53_565 PF07687 Peptidase dimerisation domain CH53_565 PF01546 Peptidase family M20/M25/M40 CH53_566 PF02557 D-alanyl-D-alanine carboxypeptidase CH53_567 PF13980 Uncharacterised protein family (UPF0370) CH53_568 PF02230 Phospholipase/Carboxylesterase CH53_57 PF00696 Amino acid kinase family CH53_571 PF17176 tRNA-binding domain CH53_571 PF13718 GNAT acetyltransferase 2 CH53_571 PF05127 Helicase CH53_572 PF04284 Protein of unknown function (DUF441) CH53_573 PF04228 Putative neutral zinc metallopeptidase CH53_574 PF01259 SAICAR synthetase CH53_575 PF06804 NlpB/DapX lipoprotein CH53_576 PF00701 Dihydrodipicolinate synthetase family CH53_577 PF01842 ACT domain CH53_578 PF00578 AhpC/TSA family CH53_579 PF01594 AI-2E family transporter CH53_58 PF11392 Protein of unknown function (DUF2877) CH53_580 PF01435 Peptidase family M48 CH53_580 PF07720 Tetratricopeptide repeat CH53_581 PF03960 ArsC family CH53_582 PF00308 Bacterial dnaA protein CH53_583 PF00860 Permease family CH53_585 PF02769 AIR synthase related protein, C-terminal domain CH53_585 PF00586 AIR synthase related protein, N-terminal domain CH53_586 PF00551 Formyl transferase CH53_587 PF13302 Acetyltransferase (GNAT) domain CH53_589 PF00005 ABC transporter CH53_59 PF06545 Protein of unknown function (DUF1116) CH53_590 PF00528 Binding-protein-dependent transport system inner membrane component CH53_591 PF00528 Binding-protein-dependent transport system inner membrane component CH53_592 PF17941 Polyphosphate kinase C-terminal domain 1 CH53_592 PF13089 Polyphosphate kinase N-terminal domain CH53_592 PF13090 Polyphosphate kinase C-terminal domain 2 CH53_592 PF02503 Polyphosphate kinase middle domain CH53_593 PF02541 Ppx/GppA phosphatase family CH53_595 PF03448 MgtE intracellular N domain CH53_595 PF01769 Divalent cation transporter CH53_595 PF00571 CBS domain CH53_598 PF00012 Hsp70 protein CH53_599 PF13533 Biotin-lipoyl like CH53_60 PF00549 CoA-ligase CH53_60 PF02629 CoA binding domain CH53_600 PF00873 AcrB/AcrD/AcrF family CH53_601 PF00873 AcrB/AcrD/AcrF family CH53_602 PF00672 HAMP domain CH53_602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_602 PF00512 His Kinase A (phospho-acceptor) domain CH53_603 PF00486 Transcriptional regulatory protein, C terminal CH53_603 PF00072 Response regulator receiver domain CH53_604 PF07411 Domain of unknown function (DUF1508) CH53_606 PF00781 Diacylglycerol kinase catalytic domain CH53_607 PF03608 PTS system enzyme II sorbitol-specific factor CH53_608 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH53_608 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH53_609 PF03829 PTS system glucitol/sorbitol-specific IIA component CH53_61 PF02615 Malate/L-lactate dehydrogenase CH53_610 PF00106 short chain dehydrogenase CH53_611 PF06923 Glucitol operon activator protein (GutM) CH53_612 PF08220 DeoR-like helix-turn-helix domain CH53_612 PF00455 DeoR C terminal sensor domain CH53_613 PF00571 CBS domain CH53_613 PF01380 SIS domain CH53_616 PF08543 Phosphomethylpyrimidine kinase CH53_62 PF01546 Peptidase family M20/M25/M40 CH53_620 PF02540 NAD synthase CH53_620 PF00117 Glutamine amidotransferase class-I CH53_620 PF00958 GMP synthase C terminal domain CH53_621 PF00478 IMP dehydrogenase / GMP reductase domain CH53_621 PF00571 CBS domain CH53_622 PF02601 Exonuclease VII, large subunit CH53_622 PF13742 OB-fold nucleic acid binding domain CH53_623 PF07191 zinc-ribbons CH53_625 PF01926 50S ribosome-binding GTPase CH53_625 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH53_626 PF13360 PQQ-like domain CH53_627 PF09976 Tetratricopeptide repeat-like domain CH53_628 PF03129 Anticodon binding domain CH53_628 PF13393 Histidyl-tRNA synthetase CH53_629 PF04551 GcpE protein CH53_63 PF05899 Protein of unknown function (DUF861) CH53_63 PF07883 Cupin domain CH53_630 PF13464 Domain of unknown function (DUF4115) CH53_632 PF04055 Radical SAM superfamily CH53_633 PF00334 Nucleoside diphosphate kinase CH53_635 PF00912 Transglycosylase CH53_635 PF00905 Penicillin binding protein transpeptidase domain CH53_635 PF06832 Penicillin-Binding Protein C-terminus Family CH53_636 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH53_636 PF07678 A-macroglobulin TED domain CH53_636 PF07703 Alpha-2-macroglobulin bait region domain CH53_636 PF01835 MG2 domain CH53_636 PF17962 Bacterial macroglobulin domain 6 CH53_636 PF00207 Alpha-2-macroglobulin family CH53_636 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH53_636 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH53_636 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH53_637 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH53_637 PF03797 Autotransporter beta-domain CH53_637 PF03212 Pertactin CH53_638 PF07179 SseB protein N-terminal domain CH53_638 PF14581 SseB protein C-terminal domain CH53_639 PF12404 Peptidase CH53_639 PF00883 Cytosol aminopeptidase family, catalytic domain CH53_64 PF02595 Glycerate kinase family CH53_640 PF04384 Iron-sulphur cluster assembly CH53_641 PF00111 2Fe-2S iron-sulfur cluster binding domain CH53_642 PF00012 Hsp70 protein CH53_643 PF00226 DnaJ domain CH53_643 PF07743 HSCB C-terminal oligomerisation domain CH53_644 PF01521 Iron-sulphur cluster biosynthesis CH53_645 PF01592 NifU-like N terminal domain CH53_646 PF00266 Aminotransferase class-V CH53_647 PF02082 Transcriptional regulator CH53_648 PF00588 SpoU rRNA Methylase family CH53_649 PF00459 Inositol monophosphatase family CH53_65 PF00860 Permease family CH53_650 PF03824 High-affinity nickel-transport protein CH53_651 PF06226 Protein of unknown function (DUF1007) CH53_652 PF12832 MFS_1 like family CH53_653 PF00874 PRD domain CH53_654 PF00464 Serine hydroxymethyltransferase CH53_655 PF00042 Globin CH53_655 PF00970 Oxidoreductase FAD-binding domain CH53_655 PF00175 Oxidoreductase NAD-binding domain CH53_656 PF14502 Helix-turn-helix domain CH53_656 PF14503 YhfZ C-terminal domain CH53_658 PF01168 Alanine racemase, N-terminal domain CH53_659 PF02126 Phosphotriesterase family CH53_66 PF01979 Amidohydrolase family CH53_660 PF10941 Protein of unknown function DUF2620 CH53_661 PF10797 Protein of unknown function CH53_662 PF00543 Nitrogen regulatory protein P-II CH53_663 PF02540 NAD synthase CH53_663 PF00795 Carbon-nitrogen hydrolase CH53_664 PF00072 Response regulator receiver domain CH53_664 PF00158 Sigma-54 interaction domain CH53_665 PF13942 YfhG lipoprotein CH53_666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_666 PF00512 His Kinase A (phospho-acceptor) domain CH53_668 PF02769 AIR synthase related protein, C-terminal domain CH53_668 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH53_668 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH53_669 PF01464 Transglycosylase SLT domain CH53_669 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_67 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH53_670 PF14437 MafB19-like deaminase CH53_673 PF01380 SIS domain CH53_674 PF01380 SIS domain CH53_674 PF01418 Helix-turn-helix domain, rpiR family CH53_675 PF12838 4Fe-4S dicluster domain CH53_676 PF01648 4'-phosphopantetheinyl transferase superfamily CH53_677 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH53_678 PF02565 Recombination protein O C terminal CH53_678 PF11967 Recombination protein O N terminal CH53_679 PF01926 50S ribosome-binding GTPase CH53_679 PF07650 KH domain CH53_68 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH53_68 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH53_680 PF00035 Double-stranded RNA binding motif CH53_680 PF14622 Ribonuclease-III-like CH53_681 PF10502 Signal peptidase, peptidase S26 CH53_682 PF06421 GTP-binding protein LepA C-terminus CH53_682 PF03144 Elongation factor Tu domain 2 CH53_682 PF00679 Elongation factor G C-terminus CH53_682 PF00009 Elongation factor Tu GTP binding domain CH53_685 PF03888 MucB/RseB N-terminal domain CH53_685 PF17188 MucB/RseB C-terminal domain CH53_686 PF03873 Anti sigma-E protein RseA, C-terminal domain CH53_686 PF03872 Anti sigma-E protein RseA, N-terminal domain CH53_687 PF08281 Sigma-70, region 4 CH53_687 PF04542 Sigma-70 region 2 CH53_688 PF02910 Fumarate reductase flavoprotein C-term CH53_688 PF00890 FAD binding domain CH53_689 PF05175 Methyltransferase small domain CH53_69 PF01261 Xylose isomerase-like TIM barrel CH53_690 PF00270 DEAD/DEAH box helicase CH53_690 PF00271 Helicase conserved C-terminal domain CH53_691 PF12796 Ankyrin repeats (3 copies) CH53_693 PF01228 Glycine radical CH53_694 PF03167 Uracil DNA glycosylase superfamily CH53_695 PF01025 GrpE CH53_696 PF01513 ATP-NAD kinase CH53_697 PF02463 RecF/RecN/SMC N terminal domain CH53_698 PF04355 SmpA / OmlA family CH53_699 PF03658 RnfH family Ubiquitin CH53_7 PF00698 Acyl transferase domain CH53_70 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH53_70 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH53_70 PF00205 Thiamine pyrophosphate enzyme, central domain CH53_700 PF03364 Polyketide cyclase / dehydrase and lipid transport CH53_701 PF01668 SmpB protein CH53_704 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CH53_71 PF09339 IclR helix-turn-helix domain CH53_71 PF01614 Bacterial transcriptional regulator CH53_711 PF04794 YdjC-like protein CH53_712 PF07883 Cupin domain CH53_712 PF12833 Helix-turn-helix domain CH53_713 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH53_714 PF00232 Glycosyl hydrolase family 1 CH53_715 PF02378 Phosphotransferase system, EIIC CH53_716 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH53_717 PF07995 Glucose / Sorbosone dehydrogenase CH53_718 PF00248 Aldo/keto reductase family CH53_719 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH53_72 PF04115 Ureidoglycolate lyase CH53_720 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH53_721 PF07885 Ion channel CH53_721 PF02254 TrkA-N domain CH53_722 PF06411 HdeA/HdeB family CH53_723 PF03824 High-affinity nickel-transport protein CH53_724 PF03253 Urea transporter CH53_725 PF01774 UreD urease accessory protein CH53_726 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH53_727 PF01730 UreF CH53_728 PF02814 UreE urease accessory protein, N-terminal domain CH53_728 PF05194 UreE urease accessory protein, C-terminal domain CH53_729 PF00449 Urease alpha-subunit, N-terminal domain CH53_729 PF01979 Amidohydrolase family CH53_73 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_73 PF03466 LysR substrate binding domain CH53_730 PF00699 Urease beta subunit CH53_731 PF00547 Urease, gamma subunit CH53_732 PF00005 ABC transporter CH53_733 PF17845 FbpC C-terminal regulatory nucleotide binding domain CH53_733 PF00005 ABC transporter CH53_734 PF00528 Binding-protein-dependent transport system inner membrane component CH53_734 PF12911 N-terminal TM domain of oligopeptide transport permease C CH53_735 PF00528 Binding-protein-dependent transport system inner membrane component CH53_736 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_74 PF00990 Diguanylate cyclase, GGDEF domain CH53_74 PF00072 Response regulator receiver domain CH53_740 PF01965 DJ-1/PfpI family CH53_741 PF00313 'Cold-shock' DNA-binding domain CH53_743 PF06711 Protein of unknown function (DUF1198) CH53_744 PF09400 Protein of unknown function (DUF2002) CH53_745 PF12833 Helix-turn-helix domain CH53_748 PF06392 Acid shock protein repeat CH53_749 PF05957 Bacterial protein of unknown function (DUF883) CH53_75 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH53_75 PF00512 His Kinase A (phospho-acceptor) domain CH53_75 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_75 PF00672 HAMP domain CH53_75 PF01627 Hpt domain CH53_75 PF00072 Response regulator receiver domain CH53_751 PF00462 Glutaredoxin CH53_752 PF07972 NrdI Flavodoxin like CH53_753 PF02867 Ribonucleotide reductase, barrel domain CH53_753 PF00317 Ribonucleotide reductase, all-alpha domain CH53_753 PF08343 Ribonucleotide reductase N-terminal CH53_754 PF00268 Ribonucleotide reductase, small chain CH53_755 PF00571 CBS domain CH53_755 PF00005 ABC transporter CH53_756 PF00528 Binding-protein-dependent transport system inner membrane component CH53_757 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH53_758 PF07979 Intimin C-type lectin domain CH53_758 PF09134 Invasin, domain 3 CH53_758 PF11924 Inverse autotransporter, beta-domain CH53_758 PF02369 Bacterial Ig-like domain (group 1) CH53_76 PF16353 Domain of unknown function(DUF4981) CH53_76 PF02929 Beta galactosidase small chain CH53_76 PF00703 Glycosyl hydrolases family 2 CH53_76 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH53_76 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH53_761 PF02369 Bacterial Ig-like domain (group 1) CH53_761 PF09134 Invasin, domain 3 CH53_761 PF07979 Intimin C-type lectin domain CH53_761 PF11924 Inverse autotransporter, beta-domain CH53_763 PF00929 Exonuclease CH53_764 PF00075 RNase H CH53_765 PF08241 Methyltransferase domain CH53_766 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH53_766 PF00753 Metallo-beta-lactamase superfamily CH53_767 PF01476 LysM domain CH53_767 PF01464 Transglycosylase SLT domain CH53_768 PF03372 Endonuclease/Exonuclease/phosphatase family CH53_769 PF07690 Major Facilitator Superfamily CH53_770 PF03466 LysR substrate binding domain CH53_770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_771 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_771 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_774 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_774 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_780 PF07977 FabA-like domain CH53_783 PF00550 Phosphopantetheine attachment site CH53_794 PF00004 ATPase family associated with various cellular activities (AAA) CH53_794 PF07724 AAA domain (Cdc48 subfamily) CH53_794 PF17871 AAA lid domain CH53_794 PF02861 Clp amino terminal domain, pathogenicity island component CH53_794 PF10431 C-terminal, D2-small domain, of ClpB protein CH53_796 PF01479 S4 domain CH53_796 PF00849 RNA pseudouridylate synthase CH53_797 PF13525 Outer membrane lipoprotein CH53_798 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH53_799 PF01817 Chorismate mutase type II CH53_799 PF00800 Prephenate dehydratase CH53_8 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH53_8 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH53_80 PF07238 PilZ domain CH53_80 PF00535 Glycosyl transferase family 2 CH53_80 PF03552 Cellulose synthase CH53_800 PF01817 Chorismate mutase type II CH53_800 PF02153 Prephenate dehydrogenase CH53_801 PF00793 DAHP synthetase I family CH53_802 PF00072 Response regulator receiver domain CH53_802 PF04397 LytTr DNA-binding domain CH53_803 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH53_804 PF04338 Protein of unknown function, DUF481 CH53_805 PF01245 Ribosomal protein L19 CH53_806 PF01746 tRNA (Guanine-1)-methyltransferase CH53_807 PF05239 PRC-barrel domain CH53_807 PF01782 RimM N-terminal domain CH53_808 PF00886 Ribosomal protein S16 CH53_809 PF02978 Signal peptide binding domain CH53_809 PF02881 SRP54-type protein, helical bundle domain CH53_809 PF00448 SRP54-type protein, GTPase domain CH53_810 PF01578 Cytochrome C assembly protein CH53_811 PF00571 CBS domain CH53_811 PF03471 Transporter associated domain CH53_811 PF01595 Cyclin M transmembrane N-terminal domain CH53_812 PF02664 S-Ribosylhomocysteinase (LuxS) CH53_813 PF04262 Glutamate-cysteine ligase CH53_814 PF09335 SNARE associated Golgi protein CH53_815 PF13419 Haloacid dehalogenase-like hydrolase CH53_82 PF00483 Nucleotidyl transferase CH53_820 PF02599 Global regulator protein family CH53_821 PF01411 tRNA synthetases class II (A) CH53_821 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH53_821 PF02272 DHHA1 domain CH53_822 PF02631 RecX family CH53_823 PF00154 recA bacterial DNA recombination protein CH53_824 PF02464 Competence-damaged protein CH53_825 PF07690 Major Facilitator Superfamily CH53_828 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_828 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_829 PF02779 Transketolase, pyrimidine binding domain CH53_829 PF02780 Transketolase, C-terminal domain CH53_83 PF01740 STAS domain CH53_830 PF00456 Transketolase, thiamine diphosphate binding domain CH53_831 PF02653 Branched-chain amino acid transport system / permease component CH53_832 PF00005 ABC transporter CH53_834 PF00356 Bacterial regulatory proteins, lacI family CH53_836 PF02613 Nitrate reductase delta subunit CH53_837 PF04976 DMSO reductase anchor subunit (DmsC) CH53_838 PF12800 4Fe-4S binding domain CH53_838 PF13247 4Fe-4S dicluster domain CH53_839 PF00384 Molybdopterin oxidoreductase CH53_839 PF01568 Molydopterin dinucleotide binding domain CH53_839 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH53_84 PF00072 Response regulator receiver domain CH53_84 PF00486 Transcriptional regulatory protein, C terminal CH53_840 PF00465 Iron-containing alcohol dehydrogenase CH53_841 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_842 PF07690 Major Facilitator Superfamily CH53_843 PF07882 L-fucose isomerase, second N-terminal domain CH53_843 PF02952 L-fucose isomerase, C-terminal domain CH53_843 PF07881 L-fucose isomerase, first N-terminal domain CH53_844 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_844 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_845 PF05025 RbsD / FucU transport protein family CH53_846 PF08220 DeoR-like helix-turn-helix domain CH53_846 PF00455 DeoR C terminal sensor domain CH53_847 PF00596 Class II Aldolase and Adducin N-terminal domain CH53_849 PF08220 DeoR-like helix-turn-helix domain CH53_849 PF00455 DeoR C terminal sensor domain CH53_851 PF00005 ABC transporter CH53_852 PF02653 Branched-chain amino acid transport system / permease component CH53_853 PF02653 Branched-chain amino acid transport system / permease component CH53_854 PF01261 Xylose isomerase-like TIM barrel CH53_855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH53_855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH53_856 PF05681 Fumarate hydratase (Fumerase) CH53_856 PF05683 Fumarase C-terminus CH53_857 PF13458 Periplasmic binding protein CH53_858 PF02653 Branched-chain amino acid transport system / permease component CH53_859 PF11862 Domain of unknown function (DUF3382) CH53_859 PF02653 Branched-chain amino acid transport system / permease component CH53_86 PF00343 Carbohydrate phosphorylase CH53_860 PF00005 ABC transporter CH53_861 PF00005 ABC transporter CH53_865 PF00795 Carbon-nitrogen hydrolase CH53_866 PF04198 Putative sugar-binding domain CH53_866 PF13936 Helix-turn-helix domain CH53_867 PF03610 PTS system fructose IIA component CH53_868 PF03830 PTS system sorbose subfamily IIB component CH53_869 PF03609 PTS system sorbose-specific iic component CH53_870 PF03613 PTS system mannose/fructose/sorbose family IID component CH53_871 PF00107 Zinc-binding dehydrogenase CH53_871 PF08240 Alcohol dehydrogenase GroES-like domain CH53_872 PF01022 Bacterial regulatory protein, arsR family CH53_873 PF03764 Elongation factor G, domain IV CH53_873 PF00009 Elongation factor Tu GTP binding domain CH53_873 PF03144 Elongation factor Tu domain 2 CH53_873 PF00679 Elongation factor G C-terminus CH53_873 PF14492 Elongation Factor G, domain II CH53_874 PF02705 K+ potassium transporter CH53_875 PF00291 Pyridoxal-phosphate dependent enzyme CH53_876 PF02447 GntP family permease CH53_877 PF03466 LysR substrate binding domain CH53_877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH53_878 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_878 PF00005 ABC transporter CH53_879 PF00005 ABC transporter CH53_879 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH53_881 PF00528 Binding-protein-dependent transport system inner membrane component CH53_882 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH53_883 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH53_883 PF13378 Enolase C-terminal domain-like CH53_887 PF02801 Beta-ketoacyl synthase, C-terminal domain CH53_887 PF00109 Beta-ketoacyl synthase, N-terminal domain CH53_888 PF02321 Outer membrane efflux protein CH53_889 PF12704 MacB-like periplasmic core domain CH53_889 PF00005 ABC transporter CH53_889 PF02687 FtsX-like permease family CH53_890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH53_891 PF03412 Peptidase C39 family CH53_891 PF00005 ABC transporter CH53_891 PF00664 ABC transporter transmembrane region CH53_893 PF01323 DSBA-like thioredoxin domain CH53_893 PF00085 Thioredoxin CH53_896 PF00419 Fimbrial protein CH53_897 PF00419 Fimbrial protein CH53_9 PF02504 Fatty acid synthesis protein CH53_900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_900 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_901 PF00577 Outer membrane usher protein CH53_901 PF13954 PapC N-terminal domain CH53_901 PF13953 PapC C-terminal domain CH53_902 PF00419 Fimbrial protein CH53_903 PF00419 Fimbrial protein CH53_918 PF01026 TatD related DNase CH53_923 PF05188 MutS domain II CH53_923 PF01624 MutS domain I CH53_923 PF00488 MutS domain V CH53_923 PF05190 MutS family domain IV CH53_923 PF05192 MutS domain III CH53_924 PF04539 Sigma-70 region 3 CH53_924 PF04542 Sigma-70 region 2 CH53_924 PF00140 Sigma-70 factor, region 1.2 CH53_924 PF04545 Sigma-70, region 4 CH53_925 PF01476 LysM domain CH53_925 PF01551 Peptidase family M23 CH53_927 PF01975 Survival protein SurE CH53_928 PF01142 tRNA pseudouridine synthase D (TruD) CH53_929 PF02542 YgbB family CH53_93 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_93 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_930 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH53_931 PF04977 Septum formation initiator CH53_932 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH53_933 PF00528 Binding-protein-dependent transport system inner membrane component CH53_934 PF00005 ABC transporter CH53_935 PF12084 Protein of unknown function (DUF3561) CH53_937 PF00009 Elongation factor Tu GTP binding domain CH53_938 PF01507 Phosphoadenosine phosphosulfate reductase family CH53_939 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH53_939 PF14824 Sirohaem biosynthesis protein central CH53_939 PF10414 Sirohaem synthase dimerisation region CH53_94 PF13953 PapC C-terminal domain CH53_94 PF13954 PapC N-terminal domain CH53_94 PF00577 Outer membrane usher protein CH53_940 PF04389 Peptidase family M28 CH53_943 PF01507 Phosphoadenosine phosphosulfate reductase family CH53_944 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH53_944 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH53_945 PF00667 FAD binding domain CH53_945 PF00175 Oxidoreductase NAD-binding domain CH53_945 PF00258 Flavodoxin CH53_946 PF01242 6-pyruvoyl tetrahydropterin synthase CH53_947 PF04055 Radical SAM superfamily CH53_948 PF00080 Copper/zinc superoxide dismutase (SODC) CH53_949 PF03952 Enolase, N-terminal domain CH53_949 PF00113 Enolase, C-terminal TIM barrel domain CH53_950 PF06418 CTP synthase N-terminus CH53_950 PF00117 Glutamine amidotransferase class-I CH53_951 PF03819 MazG nucleotide pyrophosphohydrolase domain CH53_952 PF04607 Region found in RelA / SpoT proteins CH53_952 PF13291 ACT domain CH53_952 PF02824 TGS domain CH53_953 PF01938 TRAM domain CH53_953 PF05958 tRNA (Uracil-5-)-methyltransferase CH53_954 PF00072 Response regulator receiver domain CH53_954 PF00512 His Kinase A (phospho-acceptor) domain CH53_954 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH53_954 PF01627 Hpt domain CH53_954 PF00672 HAMP domain CH53_954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH53_955 PF00595 PDZ domain CH53_956 PF13286 Phosphohydrolase-associated domain CH53_956 PF01966 HD domain CH53_957 PF01048 Phosphorylase superfamily CH53_958 PF01497 Periplasmic binding protein CH53_959 PF03458 UPF0126 domain CH53_96 PF02753 Pili assembly chaperone PapD, C-terminal domain CH53_96 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH53_960 PF01521 Iron-sulphur cluster biosynthesis CH53_961 PF00654 Voltage gated chloride channel CH53_962 PF00202 Aminotransferase class-III CH53_964 PF01032 FecCD transport family CH53_965 PF01497 Periplasmic binding protein CH53_966 PF00005 ABC transporter CH53_967 PF00912 Transglycosylase CH53_967 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH53_967 PF00905 Penicillin binding protein transpeptidase domain CH53_967 PF14814 Bifunctional transglycosylase second domain CH53_968 PF04408 Helicase associated domain (HA2) CH53_968 PF00271 Helicase conserved C-terminal domain CH53_968 PF08482 ATP-dependent helicase C-terminal CH53_968 PF00270 DEAD/DEAH box helicase CH53_969 PF02834 LigT like Phosphoesterase CH53_97 PF12792 CSS motif domain associated with EAL CH53_97 PF00563 EAL domain CH53_970 PF17746 SfsA N-terminal OB domain CH53_970 PF03749 Sugar fermentation stimulation protein RE domain CH53_971 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH53_972 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH53_973 PF01743 Poly A polymerase head domain CH53_973 PF12626 Polymerase A arginine-rich C-terminus CH53_973 PF12627 Probable RNA and SrmB- binding site of polymerase A CH53_974 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH53_975 PF02548 Ketopantoate hydroxymethyltransferase CH53_976 PF02569 Pantoate-beta-alanine ligase CH53_977 PF12468 Type III secretion system leucine rich repeat protein CH53_977 PF14496 C-terminal novel E3 ligase, LRR-interacting CH53_978 PF02261 Aspartate decarboxylase CH53_979 PF01522 Polysaccharide deacetylase CH53_980 PF01061 ABC-2 type transporter CH53_981 PF00005 ABC transporter CH53_982 PF00484 Carbonic anhydrase CH53_983 PF00156 Phosphoribosyl transferase domain CH53_984 PF07732 Multicopper oxidase CH53_984 PF07731 Multicopper oxidase CH53_984 PF00394 Multicopper oxidase CH53_984 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH53_985 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH53_986 PF17284 Spermidine synthase tetramerisation domain CH53_987 PF02675 S-adenosylmethionine decarboxylase CH53_988 PF00892 EamA-like transporter family CH53_989 PF06062 Uncharacterised protein family (UPF0231) CH53_990 PF11791 Aconitate B N-terminal domain CH53_990 PF06434 Aconitate hydratase 2 N-terminus CH53_990 PF00330 Aconitase family (aconitate hydratase) CH53_991 PF00593 TonB dependent receptor CH53_991 PF07715 TonB-dependent Receptor Plug Domain CH53_993 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH53_993 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH53_994 PF02817 e3 binding domain CH53_994 PF00364 Biotin-requiring enzyme CH53_994 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH53_995 PF17831 Pyruvate dehydrogenase E1 component middle domain CH53_995 PF00456 Transketolase, thiamine diphosphate binding domain CH53_996 PF00392 Bacterial regulatory proteins, gntR family CH53_996 PF07729 FCD domain CH53_997 PF00324 Amino acid permease CH53_998 PF17113 Regulatory signalling modulator protein AmpE CH53_999 PF01510 N-acetylmuramoyl-L-alanine amidase