CH53_1004 SM01240 CH53_1004 CH53_1009 SM00957 SecA DEAD-like domain CH53_1009 SM00958 SecA preprotein cross-linking domain CH53_1013 SM00864 Tubulin/FtsZ family, GTPase domain CH53_1013 SM00865 Tubulin/FtsZ family, C-terminal domain CH53_1014 SM00842 Cell division protein FtsA CH53_1029 SM00354 helix_turn _helix lactose operon repressor CH53_1035 SM00917 LeuA allosteric (dimerisation) domain CH53_1036 SM01329 CH53_1036 CH53_1048 SM00382 ATPases associated with a variety of cellular activities CH53_105 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH53_1051 SM00486 DNA polymerase type-B family CH53_1052 SM00487 DEAD-like helicases superfamily CH53_1052 SM00490 helicase superfamily c-terminal domain CH53_1054 SM00271 DnaJ molecular chaperone homology domain CH53_1058 SM00650 Ribosomal RNA adenine dimethylases CH53_106 SM00992 Hemimethylated DNA-binding protein YccV like CH53_1065 SM00851 MGS-like domain CH53_1065 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH53_1066 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH53_107 SM00881 CoA binding domain CH53_1072 SM00904 Riboflavin kinase CH53_1076 SM00271 DnaJ molecular chaperone homology domain CH53_1081 SM00852 Probable molybdopterin binding domain CH53_1088 SM00448 cheY-homologous receiver domain CH53_1088 SM00862 Transcriptional regulatory protein, C terminal CH53_109 SM00851 MGS-like domain CH53_1090 SM00855 Phosphoglycerate mutase family CH53_1091 SM00342 helix_turn_helix, arabinose operon control protein CH53_1091 SM00871 Bacterial transcription activator, effector binding domain CH53_1095 SM00831 Cation transporter/ATPase, N-terminus CH53_1097 SM00267 diguanylate cyclase CH53_1099 SM00382 ATPases associated with a variety of cellular activities CH53_1101 SM00342 helix_turn_helix, arabinose operon control protein CH53_1102 SM00342 helix_turn_helix, arabinose operon control protein CH53_1105 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_1109 SM00829 Enoylreductase CH53_1110 SM00530 Helix-turn-helix XRE-family like proteins CH53_1111 SM00382 ATPases associated with a variety of cellular activities CH53_1117 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH53_1118 SM01133 CH53_1118 CH53_1123 SM00749 bacterial OsmY and nodulation domain CH53_1134 SM00267 diguanylate cyclase CH53_1138 SM00640 Glycosyl hydrolases family 32 CH53_1139 SM00354 helix_turn _helix lactose operon repressor CH53_1140 SM00091 PAS domain CH53_1149 SM01120 CH53_1149 CH53_1160 SM00382 ATPases associated with a variety of cellular activities CH53_1164 SM01133 CH53_1164 CH53_1166 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_1166 SM00387 Histidine kinase-like ATPases CH53_1166 SM00388 His Kinase A (phosphoacceptor) domain CH53_1167 SM00448 cheY-homologous receiver domain CH53_1167 SM00862 Transcriptional regulatory protein, C terminal CH53_1174 SM00530 Helix-turn-helix XRE-family like proteins CH53_1175 SM00530 Helix-turn-helix XRE-family like proteins CH53_1180 SM00421 helix_turn_helix, Lux Regulon CH53_1183 SM00912 haemagglutination activity domain CH53_1190 SM01022 CH53_1190 CH53_120 SM00825 Beta-ketoacyl synthase CH53_1204 SM00634 Bacterial Ig-like domain (group 1) CH53_1205 SM00953 CH53_1205 CH53_124 SM00382 ATPases associated with a variety of cellular activities CH53_1247 SM00382 ATPases associated with a variety of cellular activities CH53_1248 SM00382 ATPases associated with a variety of cellular activities CH53_125 SM00981 CH53_125 CH53_1253 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1253 SM00866 CH53_1253 CH53_1258 SM00382 ATPases associated with a variety of cellular activities CH53_1259 SM00382 ATPases associated with a variety of cellular activities CH53_1261 SM00072 Guanylate kinase homologues. CH53_1262 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH53_1273 SM00487 DEAD-like helicases superfamily CH53_1273 SM00490 helicase superfamily c-terminal domain CH53_1274 SM00028 Tetratricopeptide repeats CH53_1275 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1275 SM00322 K homology RNA-binding domain CH53_1276 SM01387 CH53_1276 CH53_1280 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1280 SM00322 K homology RNA-binding domain CH53_1287 SM00382 ATPases associated with a variety of cellular activities CH53_1289 SM01103 CH53_1289 CH53_1292 SM00448 cheY-homologous receiver domain CH53_1292 SM00862 Transcriptional regulatory protein, C terminal CH53_1293 SM00387 Histidine kinase-like ATPases CH53_1293 SM00388 His Kinase A (phosphoacceptor) domain CH53_13 SM00363 S4 RNA-binding domain CH53_1314 SM01091 Transporter associated domain CH53_1330 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH53_1331 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1331 SM00357 Cold shock protein domain CH53_1331 SM00955 CH53_1331 CH53_1333 SM00788 Adenylosuccinate synthetase CH53_1335 SM00244 prohibitin homologues CH53_1336 SM00244 prohibitin homologues CH53_134 SM00052 Putative diguanylate phosphodiesterase CH53_1340 SM00853 MutL C terminal dimerisation domain CH53_1340 SM01340 CH53_1340 CH53_1341 SM00257 Lysin motif CH53_1341 SM00646 CH53_1341 CH53_1348 SM00479 CH53_1348 CH53_135 SM00849 Metallo-beta-lactamase superfamily CH53_1361 SM00841 Elongation factor P, C-terminal CH53_1361 SM01185 CH53_1361 CH53_1365 SM00883 Chaperonin 10 Kd subunit CH53_1371 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_1375 SM00858 CH53_1375 CH53_1389 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_1394 SM00382 ATPases associated with a variety of cellular activities CH53_14 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1400 SM00382 ATPases associated with a variety of cellular activities CH53_1402 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1412 SM00382 ATPases associated with a variety of cellular activities CH53_1422 SM00342 helix_turn_helix, arabinose operon control protein CH53_1436 SM00387 Histidine kinase-like ATPases CH53_1436 SM00388 His Kinase A (phosphoacceptor) domain CH53_1436 SM00448 cheY-homologous receiver domain CH53_1437 SM00421 helix_turn_helix, Lux Regulon CH53_1437 SM00448 cheY-homologous receiver domain CH53_146 SM00357 Cold shock protein domain CH53_1460 SM00422 helix_turn_helix, mercury resistance CH53_1463 SM00662 RNA polymerases D CH53_1464 SM00363 S4 RNA-binding domain CH53_1464 SM01390 CH53_1464 CH53_147 SM00357 Cold shock protein domain CH53_1477 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH53_1478 SM01374 CH53_1478 CH53_1482 SM00322 K homology RNA-binding domain CH53_1485 SM01382 CH53_1485 CH53_1485 SM01383 CH53_1485 CH53_1489 SM01403 CH53_1489 CH53_149 SM01150 CH53_149 CH53_1493 SM00838 Elongation factor G C-terminus CH53_1493 SM00889 Elongation factor G, domain IV CH53_1506 SM00382 ATPases associated with a variety of cellular activities CH53_151 SM00382 ATPases associated with a variety of cellular activities CH53_1511 SM00382 ATPases associated with a variety of cellular activities CH53_1512 SM00062 Bacterial periplasmic substrate-binding proteins CH53_1519 SM00100 Cyclic nucleotide-monophosphate binding domain CH53_1519 SM00419 helix_turn_helix, cAMP Regulatory protein CH53_152 SM00849 Metallo-beta-lactamase superfamily CH53_1525 SM00382 ATPases associated with a variety of cellular activities CH53_1528 SM00354 helix_turn _helix lactose operon repressor CH53_153 SM00411 bacterial (prokaryotic) histone like domain CH53_154 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1544 SM00965 Secretin and TonB N terminus short domain CH53_1553 SM00363 S4 RNA-binding domain CH53_1557 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_1557 SM00387 Histidine kinase-like ATPases CH53_1557 SM00388 His Kinase A (phosphoacceptor) domain CH53_1558 SM00448 cheY-homologous receiver domain CH53_1558 SM00862 Transcriptional regulatory protein, C terminal CH53_1560 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1560 SM00732 Likely ribonuclease with RNase H fold. CH53_1561 SM00899 CH53_1561 CH53_1570 SM00421 helix_turn_helix, Lux Regulon CH53_1571 SM00450 Rhodanese Homology Domain CH53_1573 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_1573 SM01134 CH53_1573 CH53_1579 SM00642 Alpha-amylase domain CH53_158 SM00870 CH53_158 CH53_1580 SM00642 Alpha-amylase domain CH53_1585 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH53_1589 SM00354 helix_turn _helix lactose operon repressor CH53_1608 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH53_1609 SM00235 Zinc-dependent metalloprotease CH53_1615 SM00530 Helix-turn-helix XRE-family like proteins CH53_1619 SM00052 Putative diguanylate phosphodiesterase CH53_1631 SM00052 Putative diguanylate phosphodiesterase CH53_1631 SM00267 diguanylate cyclase CH53_1632 SM00028 Tetratricopeptide repeats CH53_1641 SM00382 ATPases associated with a variety of cellular activities CH53_1642 SM00382 ATPases associated with a variety of cellular activities CH53_1649 SM00387 Histidine kinase-like ATPases CH53_165 SM00382 ATPases associated with a variety of cellular activities CH53_1650 SM00421 helix_turn_helix, Lux Regulon CH53_1650 SM00448 cheY-homologous receiver domain CH53_1661 SM00342 helix_turn_helix, arabinose operon control protein CH53_1663 SM00382 ATPases associated with a variety of cellular activities CH53_167 SM00843 CH53_167 CH53_1673 SM00342 helix_turn_helix, arabinose operon control protein CH53_168 SM00344 helix_turn_helix ASNC type CH53_1681 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_1684 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_1684 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_1684 SM01358 CH53_1684 CH53_1689 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1705 SM00642 Alpha-amylase domain CH53_171 SM00382 ATPases associated with a variety of cellular activities CH53_1713 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH53_1716 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1716 SM00895 CH53_1716 CH53_172 SM00382 ATPases associated with a variety of cellular activities CH53_1720 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1720 SM00866 CH53_1720 CH53_1728 SM00387 Histidine kinase-like ATPases CH53_1728 SM00433 TopoisomeraseII CH53_1730 SM00480 DNA polymerase III beta subunit CH53_1731 SM00382 ATPases associated with a variety of cellular activities CH53_1731 SM00760 Bacterial dnaA protein helix-turn-helix domain CH53_1734 SM01234 CH53_1734 CH53_1739 SM00382 ATPases associated with a variety of cellular activities CH53_1739 SM00930 CH53_1739 CH53_174 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_1741 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_1741 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_1743 SM00387 Histidine kinase-like ATPases CH53_1743 SM00388 His Kinase A (phosphoacceptor) domain CH53_1744 SM00421 helix_turn_helix, Lux Regulon CH53_1744 SM00448 cheY-homologous receiver domain CH53_175 SM00382 ATPases associated with a variety of cellular activities CH53_175 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_1750 SM00062 Bacterial periplasmic substrate-binding proteins CH53_1753 SM00382 ATPases associated with a variety of cellular activities CH53_1757 SM00306 Hint (Hedgehog/Intein) domain N-terminal region CH53_1769 SM00382 ATPases associated with a variety of cellular activities CH53_177 SM00357 Cold shock protein domain CH53_1778 SM01228 CH53_1778 CH53_178 SM00382 ATPases associated with a variety of cellular activities CH53_1780 SM00344 helix_turn_helix ASNC type CH53_1782 SM00327 von Willebrand factor (vWF) type A domain CH53_1784 SM00382 ATPases associated with a variety of cellular activities CH53_1787 SM00382 ATPases associated with a variety of cellular activities CH53_1792 SM00354 helix_turn _helix lactose operon repressor CH53_1793 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_1793 SM00895 CH53_1793 CH53_1803 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH53_1803 SM00474 3'-5' exonuclease CH53_1803 SM00475 5'-3' exonuclease CH53_1803 SM00482 DNA polymerase A domain CH53_1806 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_1807 SM00382 ATPases associated with a variety of cellular activities CH53_1807 SM00448 cheY-homologous receiver domain CH53_1808 SM00091 PAS domain CH53_1808 SM00387 Histidine kinase-like ATPases CH53_1808 SM00388 His Kinase A (phosphoacceptor) domain CH53_1809 SM01230 CH53_1809 CH53_1815 SM00382 ATPases associated with a variety of cellular activities CH53_1819 SM00421 helix_turn_helix, Lux Regulon CH53_1820 SM00421 helix_turn_helix, Lux Regulon CH53_1824 SM00487 DEAD-like helicases superfamily CH53_1824 SM00490 helicase superfamily c-terminal domain CH53_1826 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_1826 SM00954 Region found in RelA / SpoT proteins CH53_1827 SM01409 CH53_1827 CH53_1828 SM00072 Guanylate kinase homologues. CH53_1829 SM00532 Ligase N family CH53_1834 SM00052 Putative diguanylate phosphodiesterase CH53_1834 SM00091 PAS domain CH53_1834 SM00267 diguanylate cyclase CH53_1837 SM00849 Metallo-beta-lactamase superfamily CH53_1844 SM00493 CH53_1844 CH53_1844 SM00778 Zinc-binding domain of primase-helicase CH53_1860 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH53_1860 SM01232 CH53_1860 CH53_1869 SM00829 Enoylreductase CH53_1873 SM00450 Rhodanese Homology Domain CH53_1877 SM00971 Serine acetyltransferase, N-terminal CH53_1879 SM00342 helix_turn_helix, arabinose operon control protein CH53_1880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_1880 SM00387 Histidine kinase-like ATPases CH53_1880 SM00388 His Kinase A (phosphoacceptor) domain CH53_1881 SM00448 cheY-homologous receiver domain CH53_1881 SM00862 Transcriptional regulatory protein, C terminal CH53_1883 SM00530 Helix-turn-helix XRE-family like proteins CH53_1900 SM00382 ATPases associated with a variety of cellular activities CH53_1900 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_1903 SM00354 helix_turn _helix lactose operon repressor CH53_1904 SM00487 DEAD-like helicases superfamily CH53_1904 SM00490 helicase superfamily c-terminal domain CH53_191 SM00382 ATPases associated with a variety of cellular activities CH53_1913 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH53_192 SM00062 Bacterial periplasmic substrate-binding proteins CH53_192 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH53_1921 SM00382 ATPases associated with a variety of cellular activities CH53_1944 SM00382 ATPases associated with a variety of cellular activities CH53_1949 SM00382 ATPases associated with a variety of cellular activities CH53_195 SM00346 helix_turn_helix isocitrate lyase regulation CH53_1967 SM00060 Fibronectin type 3 domain CH53_1969 SM00487 DEAD-like helicases superfamily CH53_1969 SM00490 helicase superfamily c-terminal domain CH53_1971 SM00357 Cold shock protein domain CH53_1971 SM00382 ATPases associated with a variety of cellular activities CH53_1971 SM00959 Rho termination factor, N-terminal domain CH53_1975 SM00984 UDP binding domain CH53_198 SM00849 Metallo-beta-lactamase superfamily CH53_199 SM00062 Bacterial periplasmic substrate-binding proteins CH53_199 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH53_1994 SM01219 CH53_1994 CH53_20 SM00421 helix_turn_helix, Lux Regulon CH53_2009 SM00341 Helicase and RNase D C-terminal CH53_2009 SM00487 DEAD-like helicases superfamily CH53_2009 SM00490 helicase superfamily c-terminal domain CH53_2009 SM00956 CH53_2009 CH53_2028 SM00382 ATPases associated with a variety of cellular activities CH53_2028 SM00962 SRP54-type protein, GTPase domain CH53_2028 SM00963 SRP54-type protein, helical bundle domain CH53_2029 SM00382 ATPases associated with a variety of cellular activities CH53_2036 SM00382 ATPases associated with a variety of cellular activities CH53_2037 SM00382 ATPases associated with a variety of cellular activities CH53_204 SM00382 ATPases associated with a variety of cellular activities CH53_2047 SM00382 ATPases associated with a variety of cellular activities CH53_2066 SM01004 Delta-aminolevulinic acid dehydratase CH53_2067 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH53_2090 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH53_2090 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH53_2091 SM00649 Ribosomal protein L11/L12 CH53_2096 SM00663 RNA polymerase I subunit A N-terminus CH53_2097 SM00876 Biotin and Thiamin Synthesis associated domain CH53_2108 SM00411 bacterial (prokaryotic) histone like domain CH53_211 SM00014 Acid phosphatase homologues CH53_2110 SM01209 CH53_2110 CH53_2110 SM01210 CH53_2110 CH53_2111 SM00798 AICARFT/IMPCHase bienzyme CH53_2111 SM00851 MGS-like domain CH53_212 SM01133 CH53_212 CH53_2126 SM00882 Coenzyme A transferase CH53_2127 SM00882 Coenzyme A transferase CH53_2128 SM00382 ATPases associated with a variety of cellular activities CH53_2128 SM00448 cheY-homologous receiver domain CH53_2129 SM00091 PAS domain CH53_2129 SM00387 Histidine kinase-like ATPases CH53_2129 SM00388 His Kinase A (phosphoacceptor) domain CH53_213 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_213 SM01134 CH53_213 CH53_2130 SM00346 helix_turn_helix isocitrate lyase regulation CH53_2131 SM01018 B12 binding domain CH53_2144 SM00382 ATPases associated with a variety of cellular activities CH53_2149 SM00563 Phosphate acyltransferases CH53_2156 SM00829 Enoylreductase CH53_2157 SM00382 ATPases associated with a variety of cellular activities CH53_2158 SM01005 Alanine racemase, C-terminal domain CH53_216 SM00936 Penicillin-binding protein 5, C-terminal domain CH53_2164 SM00530 Helix-turn-helix XRE-family like proteins CH53_217 SM00116 Domain in cystathionine beta-synthase and other proteins. CH53_2171 SM00382 ATPases associated with a variety of cellular activities CH53_2174 SM00062 Bacterial periplasmic substrate-binding proteins CH53_2178 SM00382 ATPases associated with a variety of cellular activities CH53_2184 SM00357 Cold shock protein domain CH53_2185 SM00357 Cold shock protein domain CH53_2193 SM00878 Biotin carboxylase C-terminal domain CH53_2198 SM00829 Enoylreductase CH53_2199 SM00052 Putative diguanylate phosphodiesterase CH53_2199 SM00267 diguanylate cyclase CH53_220 SM00382 ATPases associated with a variety of cellular activities CH53_220 SM00930 CH53_220 CH53_2204 SM00316 Ribosomal protein S1-like RNA-binding domain CH53_2228 SM00530 Helix-turn-helix XRE-family like proteins CH53_2231 SM00831 Cation transporter/ATPase, N-terminus CH53_2232 SM00354 helix_turn _helix lactose operon repressor CH53_2234 SM00642 Alpha-amylase domain CH53_2246 SM00382 ATPases associated with a variety of cellular activities CH53_2252 SM00382 ATPases associated with a variety of cellular activities CH53_2259 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH53_2260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH53_2270 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_2271 SM00073 Histidine Phosphotransfer domain CH53_2271 SM00091 PAS domain CH53_2271 SM00387 Histidine kinase-like ATPases CH53_2271 SM00388 His Kinase A (phosphoacceptor) domain CH53_2271 SM00448 cheY-homologous receiver domain CH53_2274 SM00749 bacterial OsmY and nodulation domain CH53_2284 SM00829 Enoylreductase CH53_2296 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_2296 SM00895 CH53_2296 CH53_23 SM00450 Rhodanese Homology Domain CH53_2301 SM00858 CH53_2301 CH53_2307 SM00869 Autotransporter beta-domain CH53_231 SM00518 AP endonuclease family 2 CH53_2321 SM00710 Parallel beta-helix repeats CH53_2321 SM00869 Autotransporter beta-domain CH53_2322 SM00634 Bacterial Ig-like domain (group 1) CH53_2325 SM00400 zinc finger CH53_2325 SM00493 CH53_2325 CH53_2325 SM00766 DNA primase DnaG DnaB-binding CH53_2329 SM01207 CH53_2329 CH53_2330 SM00905 Dihydroneopterin aldolase CH53_2332 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_2333 SM00287 Bacterial SH3 domain homologues CH53_2334 SM01118 CH53_2334 CH53_2348 SM00387 Histidine kinase-like ATPases CH53_2348 SM00433 TopoisomeraseII CH53_2352 SM00448 cheY-homologous receiver domain CH53_2352 SM00862 Transcriptional regulatory protein, C terminal CH53_2353 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_2353 SM00387 Histidine kinase-like ATPases CH53_2353 SM00388 His Kinase A (phosphoacceptor) domain CH53_2361 SM00434 DNA Topoisomerase IV CH53_2362 SM00563 Phosphate acyltransferases CH53_2366 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_2369 SM00342 helix_turn_helix, arabinose operon control protein CH53_238 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_238 SM01134 CH53_238 CH53_2388 SM00862 Transcriptional regulatory protein, C terminal CH53_2396 SM00382 ATPases associated with a variety of cellular activities CH53_2400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_2400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_2418 SM00052 Putative diguanylate phosphodiesterase CH53_2418 SM00091 PAS domain CH53_2418 SM00267 diguanylate cyclase CH53_2424 SM00267 diguanylate cyclase CH53_2432 SM00382 ATPases associated with a variety of cellular activities CH53_2436 SM01006 Siderophore biosynthesis protein domain CH53_2447 SM00862 Transcriptional regulatory protein, C terminal CH53_2456 SM00862 Transcriptional regulatory protein, C terminal CH53_2457 SM00421 helix_turn_helix, Lux Regulon CH53_2467 SM00421 helix_turn_helix, Lux Regulon CH53_2470 SM00862 Transcriptional regulatory protein, C terminal CH53_2481 SM01236 CH53_2481 CH53_2486 SM00422 helix_turn_helix, mercury resistance CH53_2494 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_2494 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_2494 SM00091 PAS domain CH53_2494 SM00267 diguanylate cyclase CH53_25 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_250 SM00841 Elongation factor P, C-terminal CH53_250 SM01185 CH53_250 CH53_2503 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_2503 SM00866 CH53_2503 CH53_2505 SM00421 helix_turn_helix, Lux Regulon CH53_2506 SM00877 CH53_2506 CH53_2511 SM00877 CH53_2511 CH53_2520 SM00877 CH53_2520 CH53_2521 SM00877 CH53_2521 CH53_2523 SM00342 helix_turn_helix, arabinose operon control protein CH53_2526 SM00640 Glycosyl hydrolases family 32 CH53_2528 SM00640 Glycosyl hydrolases family 32 CH53_253 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_253 SM00895 CH53_253 CH53_2530 SM00354 helix_turn _helix lactose operon repressor CH53_2533 SM00421 helix_turn_helix, Lux Regulon CH53_2534 SM00421 helix_turn_helix, Lux Regulon CH53_2543 SM00382 ATPases associated with a variety of cellular activities CH53_2543 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_255 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH53_256 SM00014 Acid phosphatase homologues CH53_2561 SM00421 helix_turn_helix, Lux Regulon CH53_2562 SM00421 helix_turn_helix, Lux Regulon CH53_2562 SM00448 cheY-homologous receiver domain CH53_2563 SM00062 Bacterial periplasmic substrate-binding proteins CH53_2563 SM00387 Histidine kinase-like ATPases CH53_2563 SM00388 His Kinase A (phosphoacceptor) domain CH53_2563 SM00448 cheY-homologous receiver domain CH53_2567 SM00947 Carbonic anhydrase CH53_2577 SM00478 endonuclease III CH53_2577 SM00525 CH53_2577 CH53_258 SM00052 Putative diguanylate phosphodiesterase CH53_2582 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_2584 SM01152 CH53_2584 CH53_2591 SM00732 Likely ribonuclease with RNase H fold. CH53_2596 SM00731 SprT homologues. CH53_2597 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH53_2604 SM00861 Transketolase, pyrimidine binding domain CH53_2605 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH53_2617 SM01011 Aminopeptidase P, N-terminal domain CH53_262 SM00382 ATPases associated with a variety of cellular activities CH53_2624 SM00822 CH53_2624 CH53_2630 SM00448 cheY-homologous receiver domain CH53_2630 SM00862 Transcriptional regulatory protein, C terminal CH53_2631 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_2631 SM00387 Histidine kinase-like ATPases CH53_2631 SM00388 His Kinase A (phosphoacceptor) domain CH53_2638 SM00937 CH53_2638 CH53_2643 SM00091 PAS domain CH53_2643 SM00267 diguanylate cyclase CH53_2644 SM00344 helix_turn_helix ASNC type CH53_2648 SM00354 helix_turn _helix lactose operon repressor CH53_2649 SM00271 DnaJ molecular chaperone homology domain CH53_2651 SM00822 CH53_2651 CH53_2653 SM00947 Carbonic anhydrase CH53_2657 SM00382 ATPases associated with a variety of cellular activities CH53_266 SM00363 S4 RNA-binding domain CH53_2667 SM00862 Transcriptional regulatory protein, C terminal CH53_267 SM00487 DEAD-like helicases superfamily CH53_267 SM00490 helicase superfamily c-terminal domain CH53_2670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_2670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_2670 SM00319 Homologues of the ligand binding domain of Tar CH53_2671 SM00849 Metallo-beta-lactamase superfamily CH53_2676 SM00354 helix_turn _helix lactose operon repressor CH53_2678 SM00563 Phosphate acyltransferases CH53_2683 SM00927 DNA mismatch repair enzyme MutH CH53_2685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_2697 SM00646 CH53_2697 CH53_2701 SM00925 MltA specific insert domain CH53_2709 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH53_2709 SM00475 5'-3' exonuclease CH53_2718 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_2727 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH53_2729 SM00935 Outer membrane protein (OmpH-like) CH53_2735 SM00481 DNA polymerase alpha chain like domain CH53_2739 SM00977 TilS substrate C-terminal domain CH53_274 SM01057 Eukaryotic-type carbonic anhydrase CH53_2743 SM01322 CH53_2743 CH53_2751 SM00382 ATPases associated with a variety of cellular activities CH53_2751 SM00930 CH53_2751 CH53_2759 SM00155 Phospholipase D. Active site motifs. CH53_2760 SM00881 CoA binding domain CH53_2761 SM01144 CH53_2761 CH53_2763 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH53_2766 SM00347 helix_turn_helix multiple antibiotic resistance protein CH53_2775 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_2781 SM00710 Parallel beta-helix repeats CH53_2781 SM00912 haemagglutination activity domain CH53_2789 SM00900 CH53_2789 CH53_28 SM00387 Histidine kinase-like ATPases CH53_2803 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH53_2809 SM01068 Putative carbohydrate binding domain CH53_2821 SM00448 cheY-homologous receiver domain CH53_2821 SM00862 Transcriptional regulatory protein, C terminal CH53_2822 SM00091 PAS domain CH53_2822 SM00387 Histidine kinase-like ATPases CH53_2822 SM00388 His Kinase A (phosphoacceptor) domain CH53_2826 SM00642 Alpha-amylase domain CH53_2833 SM01323 CH53_2833 CH53_2843 SM00861 Transketolase, pyrimidine binding domain CH53_2846 SM00981 CH53_2846 CH53_2862 SM00382 ATPases associated with a variety of cellular activities CH53_2862 SM00994 ClpX C4-type zinc finger CH53_2862 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_2863 SM00382 ATPases associated with a variety of cellular activities CH53_2863 SM00464 Found in ATP-dependent protease La (LON) CH53_2864 SM00411 bacterial (prokaryotic) histone like domain CH53_2872 SM00344 helix_turn_helix ASNC type CH53_2873 SM00382 ATPases associated with a variety of cellular activities CH53_2874 SM00382 ATPases associated with a variety of cellular activities CH53_2875 SM00938 Nitrogen regulatory protein P-II CH53_2884 SM00382 ATPases associated with a variety of cellular activities CH53_29 SM00421 helix_turn_helix, Lux Regulon CH53_29 SM00448 cheY-homologous receiver domain CH53_2900 SM00382 ATPases associated with a variety of cellular activities CH53_2902 SM00493 CH53_2902 CH53_2903 SM00387 Histidine kinase-like ATPases CH53_2922 SM00422 helix_turn_helix, mercury resistance CH53_2924 SM00244 prohibitin homologues CH53_2926 SM00822 CH53_2926 CH53_2928 SM00382 ATPases associated with a variety of cellular activities CH53_2931 SM01001 AIR carboxylase CH53_2934 SM00840 CH53_2934 CH53_2943 SM00342 helix_turn_helix, arabinose operon control protein CH53_2958 SM00342 helix_turn_helix, arabinose operon control protein CH53_2969 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH53_297 SM00530 Helix-turn-helix XRE-family like proteins CH53_2991 SM00342 helix_turn_helix, arabinose operon control protein CH53_300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_3001 SM00235 Zinc-dependent metalloprotease CH53_3002 SM00235 Zinc-dependent metalloprotease CH53_3004 SM00382 ATPases associated with a variety of cellular activities CH53_3018 SM00849 Metallo-beta-lactamase superfamily CH53_3039 SM00382 ATPases associated with a variety of cellular activities CH53_3045 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH53_3047 SM00382 ATPases associated with a variety of cellular activities CH53_3052 SM00421 helix_turn_helix, Lux Regulon CH53_3054 SM00357 Cold shock protein domain CH53_3056 SM00267 diguanylate cyclase CH53_3058 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_3061 SM00936 Penicillin-binding protein 5, C-terminal domain CH53_3073 SM00382 ATPases associated with a variety of cellular activities CH53_3076 SM00062 Bacterial periplasmic substrate-binding proteins CH53_3079 SM00116 Domain in cystathionine beta-synthase and other proteins. CH53_3079 SM01091 Transporter associated domain CH53_3082 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_3084 SM00530 Helix-turn-helix XRE-family like proteins CH53_3102 SM01081 Putative carbohydrate binding domain CH53_3105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_3110 SM00912 haemagglutination activity domain CH53_3121 SM00448 cheY-homologous receiver domain CH53_3121 SM00862 Transcriptional regulatory protein, C terminal CH53_3122 SM00387 Histidine kinase-like ATPases CH53_3122 SM00388 His Kinase A (phosphoacceptor) domain CH53_3131 SM00796 Allophanate hydrolase subunit 1 CH53_3132 SM00797 Allophanate hydrolase subunit 2 CH53_3142 SM00861 Transketolase, pyrimidine binding domain CH53_3145 SM00881 CoA binding domain CH53_3165 SM00062 Bacterial periplasmic substrate-binding proteins CH53_3165 SM00387 Histidine kinase-like ATPases CH53_3165 SM00388 His Kinase A (phosphoacceptor) domain CH53_3165 SM00448 cheY-homologous receiver domain CH53_3166 SM00421 helix_turn_helix, Lux Regulon CH53_3166 SM00448 cheY-homologous receiver domain CH53_3168 SM00855 Phosphoglycerate mutase family CH53_3175 SM00382 ATPases associated with a variety of cellular activities CH53_3180 SM00382 ATPases associated with a variety of cellular activities CH53_3184 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_3184 SM00876 Biotin and Thiamin Synthesis associated domain CH53_3188 SM00382 ATPases associated with a variety of cellular activities CH53_3190 SM00487 DEAD-like helicases superfamily CH53_3190 SM00490 helicase superfamily c-terminal domain CH53_3193 SM00729 Elongator protein 3, MiaB family, Radical SAM CH53_3200 SM00382 ATPases associated with a variety of cellular activities CH53_3203 SM00487 DEAD-like helicases superfamily CH53_3203 SM00490 helicase superfamily c-terminal domain CH53_3205 SM00116 Domain in cystathionine beta-synthase and other proteins. CH53_3209 SM01118 CH53_3209 CH53_3210 SM00507 HNH nucleases CH53_3213 SM00382 ATPases associated with a variety of cellular activities CH53_3222 SM00382 ATPases associated with a variety of cellular activities CH53_3223 SM00450 Rhodanese Homology Domain CH53_3228 SM00382 ATPases associated with a variety of cellular activities CH53_3237 SM00487 DEAD-like helicases superfamily CH53_3237 SM00491 CH53_3237 CH53_3241 SM00382 ATPases associated with a variety of cellular activities CH53_3243 SM00062 Bacterial periplasmic substrate-binding proteins CH53_3243 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH53_3252 SM00382 ATPases associated with a variety of cellular activities CH53_3254 SM00852 Probable molybdopterin binding domain CH53_3259 SM00382 ATPases associated with a variety of cellular activities CH53_3264 SM00829 Enoylreductase CH53_3269 SM00354 helix_turn _helix lactose operon repressor CH53_3271 SM00382 ATPases associated with a variety of cellular activities CH53_3274 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_3274 SM00382 ATPases associated with a variety of cellular activities CH53_3275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_329 SM00710 Parallel beta-helix repeats CH53_3292 SM00919 Malic enzyme, NAD binding domain CH53_3292 SM01274 CH53_3292 CH53_3306 SM01091 Transporter associated domain CH53_3310 SM00382 ATPases associated with a variety of cellular activities CH53_3325 SM01350 CH53_3325 CH53_3336 SM00382 ATPases associated with a variety of cellular activities CH53_3345 SM00382 ATPases associated with a variety of cellular activities CH53_3352 SM00877 CH53_3352 CH53_3353 SM00877 CH53_3353 CH53_336 SM00387 Histidine kinase-like ATPases CH53_3361 SM00877 CH53_3361 CH53_3362 SM00877 CH53_3362 CH53_3368 SM00877 CH53_3368 CH53_3369 SM00877 CH53_3369 CH53_337 SM00421 helix_turn_helix, Lux Regulon CH53_337 SM00448 cheY-homologous receiver domain CH53_3371 SM00342 helix_turn_helix, arabinose operon control protein CH53_338 SM00387 Histidine kinase-like ATPases CH53_338 SM00388 His Kinase A (phosphoacceptor) domain CH53_338 SM00448 cheY-homologous receiver domain CH53_3387 SM00382 ATPases associated with a variety of cellular activities CH53_339 SM00434 DNA Topoisomerase IV CH53_3391 SM00855 Phosphoglycerate mutase family CH53_3399 SM00260 Two component signalling adaptor domain CH53_3399 SM00448 cheY-homologous receiver domain CH53_3404 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_3404 SM01134 CH53_3404 CH53_3405 SM00829 Enoylreductase CH53_3414 SM00382 ATPases associated with a variety of cellular activities CH53_3414 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_3435 SM00062 Bacterial periplasmic substrate-binding proteins CH53_3435 SM00387 Histidine kinase-like ATPases CH53_3435 SM00388 His Kinase A (phosphoacceptor) domain CH53_3435 SM00448 cheY-homologous receiver domain CH53_3436 SM00421 helix_turn_helix, Lux Regulon CH53_3436 SM00448 cheY-homologous receiver domain CH53_3438 SM00382 ATPases associated with a variety of cellular activities CH53_3442 SM00387 Histidine kinase-like ATPases CH53_3443 SM00421 helix_turn_helix, Lux Regulon CH53_3443 SM00448 cheY-homologous receiver domain CH53_3444 SM00448 cheY-homologous receiver domain CH53_3445 SM00091 PAS domain CH53_3445 SM00387 Histidine kinase-like ATPases CH53_3446 SM00764 Citrate lyase ligase C-terminal domain CH53_3462 SM00354 helix_turn _helix lactose operon repressor CH53_3463 SM00382 ATPases associated with a variety of cellular activities CH53_3463 SM00448 cheY-homologous receiver domain CH53_3464 SM00387 Histidine kinase-like ATPases CH53_3464 SM00388 His Kinase A (phosphoacceptor) domain CH53_3468 SM00901 CH53_3468 CH53_3485 SM00901 CH53_3485 CH53_349 SM00852 Probable molybdopterin binding domain CH53_352 SM01060 CH53_352 CH53_3520 SM00344 helix_turn_helix ASNC type CH53_3522 SM00829 Enoylreductase CH53_3523 SM01038 Beta galactosidase small chain CH53_3524 SM00354 helix_turn _helix lactose operon repressor CH53_3525 SM00357 Cold shock protein domain CH53_3527 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_3527 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_3529 SM00831 Cation transporter/ATPase, N-terminus CH53_3530 SM00829 Enoylreductase CH53_3536 SM00073 Histidine Phosphotransfer domain CH53_3536 SM00260 Two component signalling adaptor domain CH53_3536 SM00387 Histidine kinase-like ATPases CH53_3536 SM01231 CH53_3536 CH53_3537 SM00260 Two component signalling adaptor domain CH53_3538 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_3538 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_3538 SM00319 Homologues of the ligand binding domain of Tar CH53_3539 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_3539 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_3539 SM00319 Homologues of the ligand binding domain of Tar CH53_354 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH53_3540 SM00138 Methyltransferase, chemotaxis proteins CH53_3541 SM00448 cheY-homologous receiver domain CH53_3542 SM00448 cheY-homologous receiver domain CH53_3550 SM00858 CH53_3550 CH53_3559 SM00047 Lysozyme subfamily 2 CH53_3571 SM00382 ATPases associated with a variety of cellular activities CH53_3584 SM00478 endonuclease III CH53_3585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_3585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_3586 SM00342 helix_turn_helix, arabinose operon control protein CH53_3594 SM00062 Bacterial periplasmic substrate-binding proteins CH53_3594 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH53_3596 SM00382 ATPases associated with a variety of cellular activities CH53_3604 SM00530 Helix-turn-helix XRE-family like proteins CH53_3606 SM00342 helix_turn_helix, arabinose operon control protein CH53_3610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_3610 SM00267 diguanylate cyclase CH53_3615 SM00642 Alpha-amylase domain CH53_3616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_3620 SM00421 helix_turn_helix, Lux Regulon CH53_3620 SM00448 cheY-homologous receiver domain CH53_3621 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH53_3621 SM00465 GIY-YIG type nucleases (URI domain) CH53_3639 SM00910 CH53_3639 CH53_364 SM00354 helix_turn _helix lactose operon repressor CH53_3653 SM01022 CH53_3653 CH53_3659 SM00857 Resolvase, N terminal domain CH53_3674 SM00421 helix_turn_helix, Lux Regulon CH53_3676 SM00347 helix_turn_helix multiple antibiotic resistance protein CH53_3681 SM00421 helix_turn_helix, Lux Regulon CH53_3681 SM00448 cheY-homologous receiver domain CH53_3684 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_3690 SM00448 cheY-homologous receiver domain CH53_3691 SM00387 Histidine kinase-like ATPases CH53_3692 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_3692 SM01134 CH53_3692 CH53_3695 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_3698 SM00354 helix_turn _helix lactose operon repressor CH53_3709 SM00382 ATPases associated with a variety of cellular activities CH53_3727 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_3727 SM00387 Histidine kinase-like ATPases CH53_3741 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_3741 SM00866 CH53_3741 CH53_3745 SM00382 ATPases associated with a variety of cellular activities CH53_3754 SM00257 Lysin motif CH53_3760 SM01400 CH53_3760 CH53_3764 SM00937 CH53_3764 CH53_377 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_377 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH53_3770 SM00267 diguanylate cyclase CH53_3775 SM00481 DNA polymerase alpha chain like domain CH53_378 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH53_3788 SM00836 DALR anticodon binding domain CH53_3788 SM01016 Arginyl tRNA synthetase N terminal dom CH53_3801 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH53_3802 SM00382 ATPases associated with a variety of cellular activities CH53_3805 SM00382 ATPases associated with a variety of cellular activities CH53_3807 SM00257 Lysin motif CH53_3816 SM00487 DEAD-like helicases superfamily CH53_3816 SM00491 CH53_3816 CH53_3820 SM00341 Helicase and RNase D C-terminal CH53_3820 SM00474 3'-5' exonuclease CH53_3832 SM00912 haemagglutination activity domain CH53_3836 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_3839 SM01005 Alanine racemase, C-terminal domain CH53_3841 SM00052 Putative diguanylate phosphodiesterase CH53_3841 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_3841 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_3841 SM00091 PAS domain CH53_3841 SM00267 diguanylate cyclase CH53_3844 SM00763 PrkA AAA domain CH53_3847 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH53_3851 SM00870 CH53_3851 CH53_3855 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH53_3855 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH53_3855 SM00493 CH53_3855 CH53_386 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_3867 SM00448 cheY-homologous receiver domain CH53_3868 SM00984 UDP binding domain CH53_3869 SM00528 Domain in histone-like proteins of HNS family CH53_3878 SM00382 ATPases associated with a variety of cellular activities CH53_3879 SM00382 ATPases associated with a variety of cellular activities CH53_3881 SM00155 Phospholipase D. Active site motifs. CH53_3882 SM00052 Putative diguanylate phosphodiesterase CH53_3893 SM00749 bacterial OsmY and nodulation domain CH53_3900 SM00481 DNA polymerase alpha chain like domain CH53_3903 SM00363 S4 RNA-binding domain CH53_3905 SM00822 CH53_3905 CH53_3908 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH53_3908 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH53_3908 SM00493 CH53_3908 CH53_3913 SM00014 Acid phosphatase homologues CH53_3915 SM00028 Tetratricopeptide repeats CH53_3918 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH53_3921 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_3923 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_3923 SM01134 CH53_3923 CH53_3927 SM00357 Cold shock protein domain CH53_3927 SM00955 CH53_3927 CH53_3929 SM00478 endonuclease III CH53_3929 SM00525 CH53_3929 CH53_393 SM00354 helix_turn _helix lactose operon repressor CH53_3931 SM00900 CH53_3931 CH53_3933 SM00342 helix_turn_helix, arabinose operon control protein CH53_3939 SM00382 ATPases associated with a variety of cellular activities CH53_3941 SM00382 ATPases associated with a variety of cellular activities CH53_3946 SM00382 ATPases associated with a variety of cellular activities CH53_3948 SM00342 helix_turn_helix, arabinose operon control protein CH53_3953 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH53_3954 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_3954 SM00866 CH53_3954 CH53_3957 SM00354 helix_turn _helix lactose operon repressor CH53_3973 SM00421 helix_turn_helix, Lux Regulon CH53_3978 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_3983 SM00382 ATPases associated with a variety of cellular activities CH53_3985 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH53_3988 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_3988 SM00382 ATPases associated with a variety of cellular activities CH53_3989 SM00849 Metallo-beta-lactamase superfamily CH53_399 SM00052 Putative diguanylate phosphodiesterase CH53_3992 SM00344 helix_turn_helix ASNC type CH53_3995 SM00062 Bacterial periplasmic substrate-binding proteins CH53_4 SM00825 Beta-ketoacyl synthase CH53_401 SM00382 ATPases associated with a variety of cellular activities CH53_4016 SM00098 Alkaline phosphatase homologues CH53_4017 SM00822 CH53_4017 CH53_4019 SM00871 Bacterial transcription activator, effector binding domain CH53_4023 SM00100 Cyclic nucleotide-monophosphate binding domain CH53_4023 SM00419 helix_turn_helix, cAMP Regulatory protein CH53_4026 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH53_4026 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH53_4030 SM00448 cheY-homologous receiver domain CH53_4030 SM00862 Transcriptional regulatory protein, C terminal CH53_4031 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_4031 SM00387 Histidine kinase-like ATPases CH53_4031 SM00388 His Kinase A (phosphoacceptor) domain CH53_4034 SM00020 Trypsin-like serine protease CH53_4035 SM00530 Helix-turn-helix XRE-family like proteins CH53_4037 SM00382 ATPases associated with a variety of cellular activities CH53_4037 SM00487 DEAD-like helicases superfamily CH53_4037 SM00490 helicase superfamily c-terminal domain CH53_4037 SM00847 Helicase associated domain (HA2) Add an annotation CH53_404 SM00062 Bacterial periplasmic substrate-binding proteins CH53_4046 SM00890 Domain of unknown function CH53_4050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH53_4053 SM00091 PAS domain CH53_4053 SM00382 ATPases associated with a variety of cellular activities CH53_4055 SM00953 CH53_4055 CH53_4062 SM00382 ATPases associated with a variety of cellular activities CH53_4069 SM00382 ATPases associated with a variety of cellular activities CH53_4070 SM00382 ATPases associated with a variety of cellular activities CH53_4079 SM00363 S4 RNA-binding domain CH53_4084 SM00347 helix_turn_helix multiple antibiotic resistance protein CH53_4094 SM00479 CH53_4094 CH53_4099 SM00354 helix_turn _helix lactose operon repressor CH53_41 SM01091 Transporter associated domain CH53_4114 SM00382 ATPases associated with a variety of cellular activities CH53_413 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH53_4136 SM00382 ATPases associated with a variety of cellular activities CH53_4141 SM00411 bacterial (prokaryotic) histone like domain CH53_4142 SM00873 B3/4 domain CH53_4142 SM00874 tRNA synthetase B5 domain CH53_4142 SM00896 Ferredoxin-fold anticodon binding domain CH53_4147 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH53_415 SM00342 helix_turn_helix, arabinose operon control protein CH53_4150 SM00060 Fibronectin type 3 domain CH53_4155 SM00843 CH53_4155 CH53_4156 SM00530 Helix-turn-helix XRE-family like proteins CH53_4157 SM01040 BRO family, N-terminal domain CH53_4161 SM00232 JAB/MPN domain CH53_4166 SM00635 Bacterial Ig-like domain 2 CH53_418 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_4196 SM00382 ATPases associated with a variety of cellular activities CH53_4201 SM00530 Helix-turn-helix XRE-family like proteins CH53_4226 SM00994 ClpX C4-type zinc finger CH53_4233 SM00346 helix_turn_helix isocitrate lyase regulation CH53_4234 SM00382 ATPases associated with a variety of cellular activities CH53_4240 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH53_4248 SM00382 ATPases associated with a variety of cellular activities CH53_4253 SM00382 ATPases associated with a variety of cellular activities CH53_4265 SM00382 ATPases associated with a variety of cellular activities CH53_427 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_427 SM00091 PAS domain CH53_427 SM00267 diguanylate cyclase CH53_4270 SM00644 CH53_4270 CH53_4271 SM00346 helix_turn_helix isocitrate lyase regulation CH53_4275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH53_4275 SM00245 tail specific protease CH53_4276 SM00945 ProQ/FINO family CH53_4277 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH53_428 SM00825 Beta-ketoacyl synthase CH53_4282 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_4282 SM00091 PAS domain CH53_4282 SM00267 diguanylate cyclase CH53_4284 SM01022 CH53_4284 CH53_4296 SM00363 S4 RNA-binding domain CH53_4305 SM00052 Putative diguanylate phosphodiesterase CH53_4310 SM01321 CH53_4310 CH53_4326 SM00990 CH53_4326 CH53_4341 SM00479 CH53_4341 CH53_4344 SM01022 CH53_4344 CH53_4346 SM00487 DEAD-like helicases superfamily CH53_4346 SM00490 helicase superfamily c-terminal domain CH53_4352 SM01091 Transporter associated domain CH53_4359 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_4359 SM00091 PAS domain CH53_4359 SM00267 diguanylate cyclase CH53_436 SM00463 Small MutS-related domain CH53_4364 SM00357 Cold shock protein domain CH53_4373 SM00342 helix_turn_helix, arabinose operon control protein CH53_4377 SM00382 ATPases associated with a variety of cellular activities CH53_4378 SM00090 RIO-like kinase CH53_4379 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_4379 SM00091 PAS domain CH53_4379 SM00267 diguanylate cyclase CH53_4383 SM00342 helix_turn_helix, arabinose operon control protein CH53_4393 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_4393 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH53_4399 SM01329 CH53_4399 CH53_44 SM00421 helix_turn_helix, Lux Regulon CH53_4406 SM00448 cheY-homologous receiver domain CH53_4406 SM00862 Transcriptional regulatory protein, C terminal CH53_4407 SM00387 Histidine kinase-like ATPases CH53_4407 SM00388 His Kinase A (phosphoacceptor) domain CH53_4408 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH53_4413 SM00382 ATPases associated with a variety of cellular activities CH53_4415 SM00487 DEAD-like helicases superfamily CH53_4415 SM00490 helicase superfamily c-terminal domain CH53_4415 SM00982 CH53_4415 CH53_4415 SM01058 CarD-like/TRCF domain CH53_451 SM00382 ATPases associated with a variety of cellular activities CH53_452 SM00830 Chorismate mutase type II CH53_458 SM00974 CH53_458 CH53_466 SM00354 helix_turn _helix lactose operon repressor CH53_468 SM00867 YceI-like domain CH53_476 SM00382 ATPases associated with a variety of cellular activities CH53_485 SM00382 ATPases associated with a variety of cellular activities CH53_490 SM01061 CAT RNA binding domain CH53_491 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_501 SM00387 Histidine kinase-like ATPases CH53_502 SM00448 cheY-homologous receiver domain CH53_502 SM00850 LytTr DNA-binding domain CH53_521 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH53_521 SM00292 breast cancer carboxy-terminal domain CH53_521 SM00532 Ligase N family CH53_522 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH53_528 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_528 SM00387 Histidine kinase-like ATPases CH53_528 SM00388 His Kinase A (phosphoacceptor) domain CH53_529 SM00448 cheY-homologous receiver domain CH53_529 SM00862 Transcriptional regulatory protein, C terminal CH53_531 SM00382 ATPases associated with a variety of cellular activities CH53_533 SM00382 ATPases associated with a variety of cellular activities CH53_535 SM00710 Parallel beta-helix repeats CH53_541 SM00382 ATPases associated with a variety of cellular activities CH53_551 SM00919 Malic enzyme, NAD binding domain CH53_551 SM01274 CH53_551 CH53_557 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_560 SM00421 helix_turn_helix, Lux Regulon CH53_560 SM00448 cheY-homologous receiver domain CH53_563 SM00028 Tetratricopeptide repeats CH53_576 SM01130 CH53_576 CH53_589 SM00382 ATPases associated with a variety of cellular activities CH53_595 SM00924 MgtE intracellular N domain CH53_6 SM00822 CH53_6 CH53_602 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_602 SM00387 Histidine kinase-like ATPases CH53_602 SM00388 His Kinase A (phosphoacceptor) domain CH53_603 SM00448 cheY-homologous receiver domain CH53_603 SM00862 Transcriptional regulatory protein, C terminal CH53_606 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH53_612 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_612 SM01134 CH53_612 CH53_613 SM00116 Domain in cystathionine beta-synthase and other proteins. CH53_621 SM00116 Domain in cystathionine beta-synthase and other proteins. CH53_621 SM01240 CH53_621 CH53_625 SM00382 ATPases associated with a variety of cellular activities CH53_626 SM00564 beta-propeller repeat CH53_630 SM00530 Helix-turn-helix XRE-family like proteins CH53_631 SM00028 Tetratricopeptide repeats CH53_633 SM00562 CH53_633 CH53_634 SM00247 Beta/gamma crystallins CH53_636 SM01359 CH53_636 CH53_636 SM01360 CH53_636 CH53_637 SM00869 Autotransporter beta-domain CH53_643 SM00271 DnaJ molecular chaperone homology domain CH53_662 SM00938 Nitrogen regulatory protein P-II CH53_664 SM00382 ATPases associated with a variety of cellular activities CH53_664 SM00448 cheY-homologous receiver domain CH53_666 SM00387 Histidine kinase-like ATPases CH53_666 SM00388 His Kinase A (phosphoacceptor) domain CH53_668 SM01211 CH53_668 CH53_669 SM00062 Bacterial periplasmic substrate-binding proteins CH53_680 SM00358 Double-stranded RNA binding motif CH53_680 SM00535 Ribonuclease III family CH53_690 SM00487 DEAD-like helicases superfamily CH53_690 SM00490 helicase superfamily c-terminal domain CH53_691 SM00248 ankyrin repeats CH53_694 SM00986 Uracil DNA glycosylase superfamily CH53_694 SM00987 UreE urease accessory protein, C-terminal domain CH53_7 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH53_708 SM00530 Helix-turn-helix XRE-family like proteins CH53_71 SM00346 helix_turn_helix isocitrate lyase regulation CH53_712 SM00342 helix_turn_helix, arabinose operon control protein CH53_728 SM00988 UreE urease accessory protein, N-terminal domain CH53_732 SM00382 ATPases associated with a variety of cellular activities CH53_733 SM00382 ATPases associated with a variety of cellular activities CH53_739 SM00450 Rhodanese Homology Domain CH53_74 SM00267 diguanylate cyclase CH53_74 SM00448 cheY-homologous receiver domain CH53_740 SM00342 helix_turn_helix, arabinose operon control protein CH53_741 SM00357 Cold shock protein domain CH53_745 SM00342 helix_turn_helix, arabinose operon control protein CH53_75 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH53_75 SM00091 PAS domain CH53_75 SM00387 Histidine kinase-like ATPases CH53_75 SM00388 His Kinase A (phosphoacceptor) domain CH53_75 SM00448 cheY-homologous receiver domain CH53_75 SM01079 CH53_75 CH53_755 SM00382 ATPases associated with a variety of cellular activities CH53_761 SM00257 Lysin motif CH53_763 SM00479 CH53_763 CH53_766 SM00849 Metallo-beta-lactamase superfamily CH53_767 SM00257 Lysin motif CH53_771 SM00825 Beta-ketoacyl synthase CH53_772 SM00822 CH53_772 CH53_774 SM00825 Beta-ketoacyl synthase CH53_785 SM00563 Phosphate acyltransferases CH53_794 SM00382 ATPases associated with a variety of cellular activities CH53_794 SM01086 C-terminal, D2-small domain, of ClpB protein CH53_796 SM00363 S4 RNA-binding domain CH53_799 SM00830 Chorismate mutase type II CH53_800 SM00830 Chorismate mutase type II CH53_802 SM00448 cheY-homologous receiver domain CH53_802 SM00850 LytTr DNA-binding domain CH53_809 SM00382 ATPases associated with a variety of cellular activities CH53_809 SM00962 SRP54-type protein, GTPase domain CH53_809 SM00963 SRP54-type protein, helical bundle domain CH53_811 SM01091 Transporter associated domain CH53_821 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH53_823 SM00382 ATPases associated with a variety of cellular activities CH53_829 SM00861 Transketolase, pyrimidine binding domain CH53_832 SM00382 ATPases associated with a variety of cellular activities CH53_839 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH53_84 SM00331 Sigma factor PP2C-like phosphatases CH53_84 SM00448 cheY-homologous receiver domain CH53_841 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_846 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_846 SM01134 CH53_846 CH53_847 SM01007 Class II Aldolase and Adducin N-terminal domain CH53_849 SM00420 helix_turn_helix, Deoxyribose operon repressor CH53_849 SM01134 CH53_849 CH53_851 SM00382 ATPases associated with a variety of cellular activities CH53_861 SM00382 ATPases associated with a variety of cellular activities CH53_864 SM01012 CH53_864 CH53_872 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH53_873 SM00838 Elongation factor G C-terminus CH53_873 SM00889 Elongation factor G, domain IV CH53_878 SM00382 ATPases associated with a variety of cellular activities CH53_879 SM00382 ATPases associated with a variety of cellular activities CH53_883 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH53_884 SM00822 CH53_884 CH53_887 SM00825 Beta-ketoacyl synthase CH53_889 SM00382 ATPases associated with a variety of cellular activities CH53_891 SM00382 ATPases associated with a variety of cellular activities CH53_90 SM00862 Transcriptional regulatory protein, C terminal CH53_923 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH53_923 SM00534 ATPase domain of DNA mismatch repair MUTS family CH53_925 SM00257 Lysin motif CH53_932 SM00062 Bacterial periplasmic substrate-binding proteins CH53_932 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH53_934 SM00382 ATPases associated with a variety of cellular activities CH53_949 SM01192 CH53_949 CH53_949 SM01193 CH53_949 CH53_952 SM00954 Region found in RelA / SpoT proteins CH53_954 SM00073 Histidine Phosphotransfer domain CH53_954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH53_954 SM00387 Histidine kinase-like ATPases CH53_954 SM00388 His Kinase A (phosphoacceptor) domain CH53_954 SM00448 cheY-homologous receiver domain CH53_955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH53_956 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH53_966 SM00382 ATPases associated with a variety of cellular activities CH53_968 SM00487 DEAD-like helicases superfamily CH53_968 SM00490 helicase superfamily c-terminal domain CH53_968 SM00847 Helicase associated domain (HA2) Add an annotation CH53_97 SM00052 Putative diguanylate phosphodiesterase CH53_98 SM00421 helix_turn_helix, Lux Regulon CH53_981 SM00382 ATPases associated with a variety of cellular activities CH53_982 SM00947 Carbonic anhydrase CH53_992 SM00342 helix_turn_helix, arabinose operon control protein CH53_996 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH53_996 SM00895 CH53_996 CH53_999 SM00644 CH53_999