locus-tag class description CH54_1 PF10672 S-adenosylmethionine-dependent methyltransferase CH54_1 PF02926 THUMP domain CH54_1 PF01170 Putative RNA methylase family UPF0020 CH54_10 PF13654 AAA domain CH54_10 PF05362 Lon protease (S16) C-terminal proteolytic domain CH54_100 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_1000 PF03788 LrgA family CH54_1001 PF04172 LrgB-like family CH54_1002 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_1002 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_1004 PF00390 Malic enzyme, N-terminal domain CH54_1004 PF03949 Malic enzyme, NAD binding domain CH54_1005 PF02698 DUF218 domain CH54_1006 PF01455 HupF/HypC family CH54_1007 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH54_1008 PF00037 4Fe-4S binding domain CH54_1008 PF12798 4Fe-4S binding domain CH54_1009 PF00361 Proton-conducting membrane transporter CH54_1010 PF00146 NADH dehydrogenase CH54_1011 PF00361 Proton-conducting membrane transporter CH54_1011 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_1012 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH54_1013 PF00361 Proton-conducting membrane transporter CH54_1013 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_1014 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH54_1014 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH54_1014 PF00374 Nickel-dependent hydrogenase CH54_1015 PF12838 4Fe-4S dicluster domain CH54_1016 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_1017 PF07450 Formate hydrogenlyase maturation protein HycH CH54_1018 PF01750 Hydrogenase maturation protease CH54_1019 PF13247 4Fe-4S dicluster domain CH54_1019 PF12800 4Fe-4S binding domain CH54_102 PF05433 Glycine zipper 2TM domain CH54_1020 PF00384 Molybdopterin oxidoreductase CH54_1020 PF01568 Molydopterin dinucleotide binding domain CH54_1020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_1021 PF01590 GAF domain CH54_1021 PF00158 Sigma-54 interaction domain CH54_1022 PF01226 Formate/nitrite transporter CH54_1023 PF02653 Branched-chain amino acid transport system / permease component CH54_1024 PF00005 ABC transporter CH54_1025 PF13407 Periplasmic binding protein domain CH54_1026 PF00356 Bacterial regulatory proteins, lacI family CH54_1027 PF04235 Protein of unknown function (DUF418) CH54_1028 PF01227 GTP cyclohydrolase I CH54_1029 PF06779 Uncharacterised MFS-type transporter YbfB CH54_103 PF17757 UvrB interaction domain CH54_103 PF03461 TRCF domain CH54_103 PF00271 Helicase conserved C-terminal domain CH54_103 PF02559 CarD-like/TRCF domain CH54_103 PF00270 DEAD/DEAH box helicase CH54_1030 PF03466 LysR substrate binding domain CH54_1030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1031 PF00107 Zinc-binding dehydrogenase CH54_1031 PF08240 Alcohol dehydrogenase GroES-like domain CH54_1032 PF00756 Putative esterase CH54_1036 PF02687 FtsX-like permease family CH54_1036 PF00005 ABC transporter CH54_1036 PF12704 MacB-like periplasmic core domain CH54_1038 PF00083 Sugar (and other) transporter CH54_104 PF12704 MacB-like periplasmic core domain CH54_104 PF02687 FtsX-like permease family CH54_1040 PF03453 MoeA N-terminal region (domain I and II) CH54_1040 PF03454 MoeA C-terminal region (domain IV) CH54_1040 PF00994 Probable molybdopterin binding domain CH54_1041 PF00899 ThiF family CH54_1042 PF00005 ABC transporter CH54_1042 PF12848 ABC transporter CH54_1044 PF13505 Outer membrane protein beta-barrel domain CH54_1045 PF00892 EamA-like transporter family CH54_1047 PF02469 Fasciclin domain CH54_105 PF00005 ABC transporter CH54_1050 PF13847 Methyltransferase domain CH54_1051 PF00210 Ferritin-like domain CH54_1052 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_1053 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1054 PF00005 ABC transporter CH54_1055 PF13426 PAS domain CH54_1055 PF08447 PAS fold CH54_1055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_1056 PF05971 RNA methyltransferase CH54_1059 PF02885 Glycosyl transferase family, helical bundle domain CH54_106 PF12704 MacB-like periplasmic core domain CH54_106 PF02687 FtsX-like permease family CH54_1060 PF00230 Major intrinsic protein CH54_1061 PF13307 Helicase C-terminal domain CH54_1061 PF06733 DEAD_2 CH54_1061 PF00270 DEAD/DEAH box helicase CH54_1062 PF00267 Gram-negative porin CH54_1064 PF00892 EamA-like transporter family CH54_1067 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1068 PF00005 ABC transporter CH54_1069 PF00528 Binding-protein-dependent transport system inner membrane component CH54_107 PF00480 ROK family CH54_1070 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_1073 PF00581 Rhodanese-like domain CH54_1074 PF07308 Protein of unknown function (DUF1456) CH54_1075 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1076 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1078 PF00005 ABC transporter CH54_1079 PF04226 Transglycosylase associated protein CH54_108 PF02146 Sir2 family CH54_1081 PF01844 HNH endonuclease CH54_1082 PF01928 CYTH domain CH54_1083 PF01565 FAD binding domain CH54_1083 PF09330 D-lactate dehydrogenase, membrane binding CH54_1084 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_1086 PF01769 Divalent cation transporter CH54_1086 PF03448 MgtE intracellular N domain CH54_1086 PF00571 CBS domain CH54_1088 PF01207 Dihydrouridine synthase (Dus) CH54_1089 PF00271 Helicase conserved C-terminal domain CH54_1089 PF00270 DEAD/DEAH box helicase CH54_109 PF07687 Peptidase dimerisation domain CH54_109 PF01546 Peptidase family M20/M25/M40 CH54_1090 PF09209 Tetracyclin repressor-like, C-terminal domain CH54_1090 PF00440 Bacterial regulatory proteins, tetR family CH54_1091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_1092 PF00005 ABC transporter CH54_1095 PF01027 Inhibitor of apoptosis-promoting Bax1 CH54_1096 PF02391 MoaE protein CH54_1097 PF02597 ThiS family CH54_1098 PF01967 MoaC family CH54_1099 PF04055 Radical SAM superfamily CH54_1099 PF06463 Molybdenum Cofactor Synthesis C CH54_11 PF06303 MatP N-terminal domain CH54_11 PF17414 MatP C-terminal ribbon-helix-helix domain CH54_110 PF08007 Cupin superfamily protein CH54_1100 PF09905 DNA-binding protein VF530 CH54_1101 PF01933 Uncharacterised protein family UPF0052 CH54_1102 PF00271 Helicase conserved C-terminal domain CH54_1102 PF17757 UvrB interaction domain CH54_1102 PF12344 Ultra-violet resistance protein B CH54_1102 PF02151 UvrB/uvrC motif CH54_1102 PF04851 Type III restriction enzyme, res subunit CH54_1103 PF00005 ABC transporter CH54_1105 PF08241 Methyltransferase domain CH54_1106 PF00155 Aminotransferase class I and II CH54_1107 PF04055 Radical SAM superfamily CH54_1107 PF06968 Biotin and Thiamin Synthesis associated domain CH54_1108 PF00202 Aminotransferase class-III CH54_1109 PF10282 Lactonase, 7-bladed beta-propeller CH54_111 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_111 PF08918 PhoQ Sensor CH54_1111 PF03459 TOBE domain CH54_1111 PF00005 ABC transporter CH54_1112 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1114 PF10766 Multidrug efflux pump-associated protein AcrZ CH54_1115 PF03459 TOBE domain CH54_1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1116 PF00005 ABC transporter CH54_1118 PF16363 GDP-mannose 4,6 dehydratase CH54_1119 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CH54_1119 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CH54_112 PF00072 Response regulator receiver domain CH54_112 PF00486 Transcriptional regulatory protein, C terminal CH54_1120 PF10509 Galactokinase galactose-binding signature CH54_1120 PF00288 GHMP kinases N terminal domain CH54_1120 PF08544 GHMP kinases C terminal CH54_1121 PF01263 Aldose 1-epimerase CH54_1123 PF00300 Histidine phosphatase superfamily (branch 1) CH54_1124 PF00793 DAHP synthetase I family CH54_1125 PF01545 Cation efflux family CH54_1126 PF04973 Nicotinamide mononucleotide transporter CH54_1127 PF02445 Quinolinate synthetase A protein CH54_1132 PF16331 TolA binding protein trimerisation CH54_1132 PF13174 Tetratricopeptide repeat CH54_1133 PF00691 OmpA family CH54_1134 PF07676 WD40-like Beta Propeller Repeat CH54_1134 PF04052 TolB amino-terminal domain CH54_1135 PF06519 TolA C-terminal CH54_1135 PF06519 TolA C-terminal CH54_1136 PF02472 Biopolymer transport protein ExbD/TolR CH54_1137 PF01618 MotA/TolQ/ExbB proton channel family CH54_1138 PF03061 Thioesterase superfamily CH54_1139 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CH54_114 PF08328 Adenylosuccinate lyase C-terminal CH54_114 PF00206 Lyase CH54_1140 PF08173 Membrane bound YbgT-like protein CH54_1141 PF02322 Cytochrome bd terminal oxidase subunit II CH54_1142 PF01654 Cytochrome bd terminal oxidase subunit I CH54_1143 PF02872 5'-nucleotidase, C-terminal domain CH54_1143 PF00149 Calcineurin-like phosphoesterase CH54_1144 PF00549 CoA-ligase CH54_1144 PF02629 CoA binding domain CH54_1145 PF00549 CoA-ligase CH54_1145 PF08442 ATP-grasp domain CH54_1146 PF02817 e3 binding domain CH54_1146 PF00364 Biotin-requiring enzyme CH54_1146 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH54_1147 PF00676 Dehydrogenase E1 component CH54_1147 PF16870 2-oxoglutarate dehydrogenase C-terminal CH54_1147 PF02779 Transketolase, pyrimidine binding domain CH54_1147 PF16078 2-oxoglutarate dehydrogenase N-terminus CH54_1148 PF13085 2Fe-2S iron-sulfur cluster binding domain CH54_1149 PF00890 FAD binding domain CH54_1149 PF02910 Fumarate reductase flavoprotein C-term CH54_115 PF04356 Protein of unknown function (DUF489) CH54_1150 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH54_1151 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CH54_1152 PF00285 Citrate synthase, C-terminal domain CH54_1153 PF01470 Pyroglutamyl peptidase CH54_1156 PF03746 LamB/YcsF family CH54_1157 PF02626 Carboxyltransferase domain, subdomain A and B CH54_1158 PF02682 Carboxyltransferase domain, subdomain C and D CH54_1159 PF01784 NIF3 (NGG1p interacting factor 3) CH54_1160 PF02112 cAMP phosphodiesterases class-II CH54_1161 PF00875 DNA photolyase CH54_1161 PF03441 FAD binding domain of DNA photolyase CH54_1162 PF08349 Protein of unknown function (DUF1722) CH54_1163 PF10725 Protein of unknown function (DUF2517) CH54_1164 PF03814 Potassium-transporting ATPase A subunit CH54_1166 PF02669 K+-transporting ATPase, c chain CH54_1167 PF13492 GAF domain CH54_1167 PF00512 His Kinase A (phospho-acceptor) domain CH54_1167 PF02702 Osmosensitive K+ channel His kinase sensor domain CH54_1167 PF13493 Domain of unknown function (DUF4118) CH54_1167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1168 PF00072 Response regulator receiver domain CH54_1168 PF00486 Transcriptional regulatory protein, C terminal CH54_117 PF00293 NUDIX domain CH54_1171 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH54_1171 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH54_1171 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH54_1171 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH54_1172 PF03925 SeqA protein C-terminal domain CH54_1172 PF17206 SeqA protein N-terminal domain CH54_1173 PF12697 Alpha/beta hydrolase family CH54_1175 PF01402 Ribbon-helix-helix protein, copG family CH54_1176 PF00672 HAMP domain CH54_1176 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_1176 PF02203 Tar ligand binding domain homologue CH54_1177 PF00258 Flavodoxin CH54_1178 PF01475 Ferric uptake regulator family CH54_1179 PF02838 Glycosyl hydrolase family 20, domain 2 CH54_1179 PF00728 Glycosyl hydrolase family 20, catalytic domain CH54_1179 PF03173 Putative carbohydrate binding domain CH54_1179 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CH54_118 PF00849 RNA pseudouridylate synthase CH54_1180 PF13982 YbfN-like lipoprotein CH54_1181 PF03573 outer membrane porin, OprD family CH54_1182 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_1182 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CH54_1183 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_1183 PF00367 phosphotransferase system, EIIB CH54_1183 PF02378 Phosphotransferase system, EIIC CH54_1184 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CH54_1185 PF01979 Amidohydrolase family CH54_1186 PF01047 MarR family CH54_1186 PF00480 ROK family CH54_1187 PF13344 Haloacid dehalogenase-like hydrolase CH54_1188 PF00733 Asparagine synthase CH54_1188 PF13537 Glutamine amidotransferase domain CH54_119 PF00180 Isocitrate/isopropylmalate dehydrogenase CH54_1195 PF01494 FAD binding domain CH54_1196 PF04055 Radical SAM superfamily CH54_1196 PF01938 TRAM domain CH54_1196 PF00919 Uncharacterized protein family UPF0004 CH54_1197 PF02562 PhoH-like protein CH54_1198 PF02130 Uncharacterized protein family UPF0054 CH54_1199 PF00571 CBS domain CH54_1199 PF03471 Transporter associated domain CH54_12 PF00691 OmpA family CH54_12 PF01389 OmpA-like transmembrane domain CH54_1200 PF00795 Carbon-nitrogen hydrolase CH54_1202 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_1203 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1204 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1205 PF00005 ABC transporter CH54_1206 PF01156 Inosine-uridine preferring nucleoside hydrolase CH54_1207 PF07295 Zinc-ribbon containing domain CH54_1208 PF13603 Leucyl-tRNA synthetase, Domain 2 CH54_1208 PF08264 Anticodon-binding domain of tRNA CH54_1208 PF00133 tRNA synthetases class I (I, L, M and V) CH54_1209 PF04390 Lipopolysaccharide-assembly CH54_1210 PF06144 DNA polymerase III, delta subunit CH54_1210 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CH54_1211 PF01467 Cytidylyltransferase-like CH54_1213 PF02590 Predicted SPOUT methyltransferase CH54_1214 PF03717 Penicillin-binding Protein dimerisation domain CH54_1214 PF00905 Penicillin binding protein transpeptidase domain CH54_1215 PF01098 Cell cycle protein CH54_1216 PF03330 Lytic transglycolase CH54_1216 PF05036 Sporulation related domain CH54_1217 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_1217 PF07943 Penicillin-binding protein 5, C-terminal domain CH54_1218 PF04359 Protein of unknown function (DUF493) CH54_1219 PF03099 Biotin/lipoate A/B protein ligase family CH54_1220 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CH54_1220 PF04055 Radical SAM superfamily CH54_1221 PF02416 mttA/Hcf106 family CH54_1222 PF05230 MASE2 domain CH54_1222 PF00990 Diguanylate cyclase, GGDEF domain CH54_1223 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_1224 PF00313 'Cold-shock' DNA-binding domain CH54_1225 PF00313 'Cold-shock' DNA-binding domain CH54_1226 PF00196 Bacterial regulatory proteins, luxR family CH54_123 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_123 PF00356 Bacterial regulatory proteins, lacI family CH54_1231 PF00664 ABC transporter transmembrane region CH54_1231 PF00005 ABC transporter CH54_1232 PF08007 Cupin superfamily protein CH54_1233 PF08274 PhnA Zinc-Ribbon CH54_1233 PF03831 PhnA domain CH54_1237 PF00232 Glycosyl hydrolase family 1 CH54_1238 PF02378 Phosphotransferase system, EIIC CH54_1238 PF00367 phosphotransferase system, EIIB CH54_1239 PF00356 Bacterial regulatory proteins, lacI family CH54_1240 PF04264 YceI-like domain CH54_1241 PF01292 Prokaryotic cytochrome b561 CH54_1244 PF00005 ABC transporter CH54_1245 PF02405 Permease MlaE CH54_1246 PF07690 Major Facilitator Superfamily CH54_1248 PF07969 Amidohydrolase family CH54_1249 PF00324 Amino acid permease CH54_1250 PF13406 Transglycosylase SLT domain CH54_1252 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1253 PF00005 ABC transporter CH54_1254 PF01810 LysE type translocator CH54_1256 PF00384 Molybdopterin oxidoreductase CH54_1256 PF01568 Molydopterin dinucleotide binding domain CH54_1256 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_1257 PF12800 4Fe-4S binding domain CH54_1257 PF13247 4Fe-4S dicluster domain CH54_1258 PF04976 DMSO reductase anchor subunit (DmsC) CH54_1259 PF02613 Nitrate reductase delta subunit CH54_126 PF08447 PAS fold CH54_126 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_1261 PF05643 Putative bacterial lipoprotein (DUF799) CH54_1263 PF03783 Curli production assembly/transport component CsgG CH54_1265 PF01292 Prokaryotic cytochrome b561 CH54_1266 PF00155 Aminotransferase class I and II CH54_1268 PF07350 Protein of unknown function (DUF1479) CH54_1269 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1269 PF07694 5TMR of 5TMR-LYT CH54_1269 PF06580 Histidine kinase CH54_127 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_127 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_1270 PF04397 LytTr DNA-binding domain CH54_1270 PF00072 Response regulator receiver domain CH54_1271 PF07690 Major Facilitator Superfamily CH54_1272 PF02685 Glucokinase CH54_1274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1274 PF03466 LysR substrate binding domain CH54_1275 PF00248 Aldo/keto reductase family CH54_1277 PF01566 Natural resistance-associated macrophage protein CH54_1279 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_1279 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_1279 PF07670 Nucleoside recognition CH54_128 PF01965 DJ-1/PfpI family CH54_128 PF12833 Helix-turn-helix domain CH54_1284 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_129 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_1290 PF12843 Putative quorum-sensing-regulated virulence factor CH54_1291 PF00533 BRCA1 C Terminus (BRCT) domain CH54_1291 PF01653 NAD-dependent DNA ligase adenylation domain CH54_1291 PF03120 NAD-dependent DNA ligase OB-fold domain CH54_1291 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CH54_1291 PF12826 Helix-hairpin-helix motif CH54_1292 PF04354 ZipA, C-terminal FtsZ-binding domain CH54_1294 PF00291 Pyridoxal-phosphate dependent enzyme CH54_1295 PF00381 PTS HPr component phosphorylation site CH54_1296 PF05524 PEP-utilising enzyme, N-terminal CH54_1296 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_1296 PF00391 PEP-utilising enzyme, mobile domain CH54_1297 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_1298 PF00672 HAMP domain CH54_1298 PF16527 Two-component sensor protein CpxA, periplasmic domain CH54_1298 PF00512 His Kinase A (phospho-acceptor) domain CH54_1298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1299 PF00072 Response regulator receiver domain CH54_1299 PF00486 Transcriptional regulatory protein, C terminal CH54_13 PF03846 Cell division inhibitor SulA CH54_130 PF05368 NmrA-like family CH54_1300 PF00291 Pyridoxal-phosphate dependent enzyme CH54_1301 PF00005 ABC transporter CH54_1302 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1303 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1305 PF07690 Major Facilitator Superfamily CH54_1306 PF01380 SIS domain CH54_1306 PF01418 Helix-turn-helix domain, rpiR family CH54_1307 PF04074 YhcH/YjgK/YiaL CH54_1308 PF00480 ROK family CH54_1309 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CH54_131 PF01638 HxlR-like helix-turn-helix CH54_1310 PF00701 Dihydrodipicolinate synthetase family CH54_1311 PF04261 Dyp-type peroxidase family CH54_1312 PF06572 Protein of unknown function (DUF1131) CH54_1313 PF04076 Bacterial OB fold (BOF) protein CH54_1314 PF00583 Acetyltransferase (GNAT) family CH54_1315 PF01218 Coproporphyrinogen III oxidase CH54_1316 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CH54_1317 PF00390 Malic enzyme, N-terminal domain CH54_1317 PF01515 Phosphate acetyl/butaryl transferase CH54_1317 PF03949 Malic enzyme, NAD binding domain CH54_1318 PF00293 NUDIX domain CH54_1319 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH54_1321 PF03264 NapC/NirT cytochrome c family, N-terminal region CH54_1322 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CH54_1323 PF01568 Molydopterin dinucleotide binding domain CH54_1323 PF00384 Molybdopterin oxidoreductase CH54_1323 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_1323 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH54_1324 PF03927 NapD protein CH54_1326 PF00196 Bacterial regulatory proteins, luxR family CH54_1326 PF00072 Response regulator receiver domain CH54_1328 PF00873 AcrB/AcrD/AcrF family CH54_1329 PF00005 ABC transporter CH54_1329 PF08402 TOBE domain CH54_1335 PF03960 ArsC family CH54_1336 PF07687 Peptidase dimerisation domain CH54_1336 PF01546 Peptidase family M20/M25/M40 CH54_1337 PF02557 D-alanyl-D-alanine carboxypeptidase CH54_1338 PF13980 Uncharacterised protein family (UPF0370) CH54_1339 PF02230 Phospholipase/Carboxylesterase CH54_134 PF07007 Lysozyme inhibitor LprI CH54_1340 PF13718 GNAT acetyltransferase 2 CH54_1340 PF05127 Helicase CH54_1340 PF17176 tRNA-binding domain CH54_1341 PF04284 Protein of unknown function (DUF441) CH54_1342 PF04228 Putative neutral zinc metallopeptidase CH54_1343 PF01259 SAICAR synthetase CH54_1344 PF06804 NlpB/DapX lipoprotein CH54_1345 PF00701 Dihydrodipicolinate synthetase family CH54_1346 PF01842 ACT domain CH54_1347 PF00578 AhpC/TSA family CH54_1348 PF01594 AI-2E family transporter CH54_1349 PF01435 Peptidase family M48 CH54_1349 PF07720 Tetratricopeptide repeat CH54_135 PF06411 HdeA/HdeB family CH54_1350 PF03960 ArsC family CH54_1351 PF00308 Bacterial dnaA protein CH54_1352 PF00860 Permease family CH54_1354 PF02769 AIR synthase related protein, C-terminal domain CH54_1354 PF00586 AIR synthase related protein, N-terminal domain CH54_1355 PF00551 Formyl transferase CH54_1356 PF13302 Acetyltransferase (GNAT) domain CH54_1358 PF00005 ABC transporter CH54_1359 PF00528 Binding-protein-dependent transport system inner membrane component CH54_136 PF01590 GAF domain CH54_136 PF00990 Diguanylate cyclase, GGDEF domain CH54_136 PF00360 Phytochrome region CH54_136 PF00563 EAL domain CH54_1360 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1361 PF02503 Polyphosphate kinase middle domain CH54_1361 PF13090 Polyphosphate kinase C-terminal domain 2 CH54_1361 PF13089 Polyphosphate kinase N-terminal domain CH54_1361 PF17941 Polyphosphate kinase C-terminal domain 1 CH54_1362 PF02541 Ppx/GppA phosphatase family CH54_1364 PF00571 CBS domain CH54_1364 PF03448 MgtE intracellular N domain CH54_1364 PF01769 Divalent cation transporter CH54_1365 PF00990 Diguanylate cyclase, GGDEF domain CH54_1365 PF13426 PAS domain CH54_1365 PF00563 EAL domain CH54_1365 PF08447 PAS fold CH54_1365 PF08448 PAS fold CH54_1365 PF05231 MASE1 CH54_1366 PF00012 Hsp70 protein CH54_1368 PF13533 Biotin-lipoyl like CH54_1369 PF00873 AcrB/AcrD/AcrF family CH54_1370 PF00873 AcrB/AcrD/AcrF family CH54_1371 PF00672 HAMP domain CH54_1371 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1371 PF00512 His Kinase A (phospho-acceptor) domain CH54_1372 PF00486 Transcriptional regulatory protein, C terminal CH54_1372 PF00072 Response regulator receiver domain CH54_1373 PF07411 Domain of unknown function (DUF1508) CH54_1375 PF00781 Diacylglycerol kinase catalytic domain CH54_1376 PF03608 PTS system enzyme II sorbitol-specific factor CH54_1377 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CH54_1377 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CH54_1378 PF03829 PTS system glucitol/sorbitol-specific IIA component CH54_1379 PF00106 short chain dehydrogenase CH54_138 PF00664 ABC transporter transmembrane region CH54_138 PF00005 ABC transporter CH54_1380 PF06923 Glucitol operon activator protein (GutM) CH54_1381 PF08220 DeoR-like helix-turn-helix domain CH54_1381 PF00455 DeoR C terminal sensor domain CH54_1382 PF01380 SIS domain CH54_1382 PF00571 CBS domain CH54_1385 PF08543 Phosphomethylpyrimidine kinase CH54_1386 PF00034 Cytochrome c CH54_1386 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CH54_1387 PF00732 GMC oxidoreductase CH54_1387 PF05199 GMC oxidoreductase CH54_1393 PF01757 Acyltransferase family CH54_14 PF04994 TfoX C-terminal domain CH54_14 PF04993 TfoX N-terminal domain CH54_140 PF13520 Amino acid permease CH54_1420 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH54_143 PF12833 Helix-turn-helix domain CH54_1437 PF05063 MT-A70 CH54_1439 PF13356 Arm DNA-binding domain CH54_1439 PF00589 Phage integrase family CH54_1439 PF14659 Phage integrase, N-terminal SAM-like domain CH54_1440 PF02540 NAD synthase CH54_1440 PF00958 GMP synthase C terminal domain CH54_1440 PF00117 Glutamine amidotransferase class-I CH54_1441 PF00571 CBS domain CH54_1441 PF00478 IMP dehydrogenase / GMP reductase domain CH54_1442 PF13742 OB-fold nucleic acid binding domain CH54_1442 PF02601 Exonuclease VII, large subunit CH54_1443 PF07191 zinc-ribbons CH54_1445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CH54_1445 PF01926 50S ribosome-binding GTPase CH54_1446 PF13360 PQQ-like domain CH54_1447 PF09976 Tetratricopeptide repeat-like domain CH54_1448 PF13393 Histidyl-tRNA synthetase CH54_1448 PF03129 Anticodon binding domain CH54_1449 PF04551 GcpE protein CH54_145 PF10964 Protein of unknown function (DUF2766) CH54_1450 PF13464 Domain of unknown function (DUF4115) CH54_1452 PF04055 Radical SAM superfamily CH54_1453 PF00334 Nucleoside diphosphate kinase CH54_1455 PF06832 Penicillin-Binding Protein C-terminus Family CH54_1455 PF00912 Transglycosylase CH54_1455 PF00905 Penicillin binding protein transpeptidase domain CH54_1456 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CH54_1456 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CH54_1456 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CH54_1456 PF07703 Alpha-2-macroglobulin bait region domain CH54_1456 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CH54_1456 PF17962 Bacterial macroglobulin domain 6 CH54_1456 PF01835 MG2 domain CH54_1456 PF07678 A-macroglobulin TED domain CH54_1456 PF00207 Alpha-2-macroglobulin family CH54_1457 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH54_1457 PF03212 Pertactin CH54_1457 PF03797 Autotransporter beta-domain CH54_1458 PF14581 SseB protein C-terminal domain CH54_1458 PF07179 SseB protein N-terminal domain CH54_1459 PF12404 Peptidase CH54_1459 PF00883 Cytosol aminopeptidase family, catalytic domain CH54_146 PF13996 YobH-like protein CH54_1460 PF04384 Iron-sulphur cluster assembly CH54_1461 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_1462 PF00012 Hsp70 protein CH54_1463 PF00226 DnaJ domain CH54_1463 PF07743 HSCB C-terminal oligomerisation domain CH54_1465 PF01521 Iron-sulphur cluster biosynthesis CH54_1466 PF01592 NifU-like N terminal domain CH54_1467 PF00266 Aminotransferase class-V CH54_1468 PF02082 Transcriptional regulator CH54_1469 PF00588 SpoU rRNA Methylase family CH54_147 PF13974 YebO-like protein CH54_1470 PF00459 Inositol monophosphatase family CH54_1471 PF03824 High-affinity nickel-transport protein CH54_1472 PF06226 Protein of unknown function (DUF1007) CH54_1473 PF12832 MFS_1 like family CH54_1474 PF00874 PRD domain CH54_1475 PF00464 Serine hydroxymethyltransferase CH54_1476 PF00970 Oxidoreductase FAD-binding domain CH54_1476 PF00042 Globin CH54_1476 PF00175 Oxidoreductase NAD-binding domain CH54_1477 PF14502 Helix-turn-helix domain CH54_1477 PF14503 YhfZ C-terminal domain CH54_1479 PF00543 Nitrogen regulatory protein P-II CH54_1480 PF02540 NAD synthase CH54_1480 PF00795 Carbon-nitrogen hydrolase CH54_1481 PF00072 Response regulator receiver domain CH54_1481 PF00158 Sigma-54 interaction domain CH54_1482 PF13942 YfhG lipoprotein CH54_1483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1483 PF00512 His Kinase A (phospho-acceptor) domain CH54_1484 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CH54_1484 PF02769 AIR synthase related protein, C-terminal domain CH54_1484 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CH54_1485 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_1485 PF01464 Transglycosylase SLT domain CH54_1486 PF14437 MafB19-like deaminase CH54_1489 PF01380 SIS domain CH54_1490 PF00196 Bacterial regulatory proteins, luxR family CH54_1490 PF03472 Autoinducer binding domain CH54_1492 PF01380 SIS domain CH54_1492 PF01418 Helix-turn-helix domain, rpiR family CH54_1493 PF12838 4Fe-4S dicluster domain CH54_1494 PF02447 GntP family permease CH54_1495 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_1496 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CH54_1497 PF02565 Recombination protein O C terminal CH54_1497 PF11967 Recombination protein O N terminal CH54_1498 PF07650 KH domain CH54_1498 PF01926 50S ribosome-binding GTPase CH54_1499 PF14622 Ribonuclease-III-like CH54_1499 PF00035 Double-stranded RNA binding motif CH54_15 PF12805 FUSC-like inner membrane protein yccS CH54_150 PF00324 Amino acid permease CH54_1500 PF10502 Signal peptidase, peptidase S26 CH54_1501 PF00009 Elongation factor Tu GTP binding domain CH54_1501 PF00679 Elongation factor G C-terminus CH54_1501 PF06421 GTP-binding protein LepA C-terminus CH54_1501 PF03144 Elongation factor Tu domain 2 CH54_1504 PF03888 MucB/RseB N-terminal domain CH54_1504 PF17188 MucB/RseB C-terminal domain CH54_1505 PF03873 Anti sigma-E protein RseA, C-terminal domain CH54_1505 PF03872 Anti sigma-E protein RseA, N-terminal domain CH54_1506 PF04542 Sigma-70 region 2 CH54_1506 PF08281 Sigma-70, region 4 CH54_1507 PF00890 FAD binding domain CH54_1507 PF02910 Fumarate reductase flavoprotein C-term CH54_1508 PF05175 Methyltransferase small domain CH54_1509 PF00271 Helicase conserved C-terminal domain CH54_1509 PF00270 DEAD/DEAH box helicase CH54_151 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CH54_1510 PF01228 Glycine radical CH54_1511 PF03167 Uracil DNA glycosylase superfamily CH54_1512 PF01025 GrpE CH54_1513 PF01513 ATP-NAD kinase CH54_1514 PF02463 RecF/RecN/SMC N terminal domain CH54_1515 PF04355 SmpA / OmlA family CH54_1516 PF03658 RnfH family Ubiquitin CH54_1517 PF03364 Polyketide cyclase / dehydrase and lipid transport CH54_1518 PF01668 SmpB protein CH54_1519 PF13356 Arm DNA-binding domain CH54_1519 PF00589 Phage integrase family CH54_152 PF00313 'Cold-shock' DNA-binding domain CH54_1523 PF01555 DNA methylase CH54_1524 PF13361 UvrD-like helicase C-terminal domain CH54_1524 PF00580 UvrD/REP helicase N-terminal domain CH54_1524 PF12705 PD-(D/E)XK nuclease superfamily CH54_1527 PF05930 Prophage CP4-57 regulatory protein (AlpA) CH54_1534 PF06067 Domain of unknown function (DUF932) CH54_1535 PF04002 RadC-like JAB domain CH54_1536 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_1537 PF04794 YdjC-like protein CH54_1538 PF12833 Helix-turn-helix domain CH54_1538 PF07883 Cupin domain CH54_1539 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH54_154 PF03717 Penicillin-binding Protein dimerisation domain CH54_154 PF00905 Penicillin binding protein transpeptidase domain CH54_1540 PF00232 Glycosyl hydrolase family 1 CH54_1541 PF02378 Phosphotransferase system, EIIC CH54_1542 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_1543 PF07995 Glucose / Sorbosone dehydrogenase CH54_1544 PF00248 Aldo/keto reductase family CH54_1545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_1546 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CH54_1547 PF07885 Ion channel CH54_1547 PF02254 TrkA-N domain CH54_1548 PF06411 HdeA/HdeB family CH54_1549 PF03824 High-affinity nickel-transport protein CH54_155 PF13847 Methyltransferase domain CH54_1550 PF03253 Urea transporter CH54_1551 PF01774 UreD urease accessory protein CH54_1552 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_1553 PF01730 UreF CH54_1554 PF05194 UreE urease accessory protein, C-terminal domain CH54_1554 PF02814 UreE urease accessory protein, N-terminal domain CH54_1555 PF01979 Amidohydrolase family CH54_1555 PF00449 Urease alpha-subunit, N-terminal domain CH54_1556 PF00699 Urease beta subunit CH54_1557 PF00547 Urease, gamma subunit CH54_1559 PF00005 ABC transporter CH54_1560 PF00005 ABC transporter CH54_1561 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_1561 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1562 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1563 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_1566 PF01965 DJ-1/PfpI family CH54_1567 PF00313 'Cold-shock' DNA-binding domain CH54_1569 PF06711 Protein of unknown function (DUF1198) CH54_157 PF05231 MASE1 CH54_157 PF08448 PAS fold CH54_157 PF00563 EAL domain CH54_157 PF13426 PAS domain CH54_157 PF00990 Diguanylate cyclase, GGDEF domain CH54_157 PF08447 PAS fold CH54_1570 PF09400 Protein of unknown function (DUF2002) CH54_1573 PF06392 Acid shock protein repeat CH54_1574 PF05957 Bacterial protein of unknown function (DUF883) CH54_1575 PF00392 Bacterial regulatory proteins, gntR family CH54_1575 PF00155 Aminotransferase class I and II CH54_1576 PF02627 Carboxymuconolactone decarboxylase family CH54_1577 PF00462 Glutaredoxin CH54_1578 PF07972 NrdI Flavodoxin like CH54_1579 PF08343 Ribonucleotide reductase N-terminal CH54_1579 PF00317 Ribonucleotide reductase, all-alpha domain CH54_1579 PF02867 Ribonucleotide reductase, barrel domain CH54_158 PF07715 TonB-dependent Receptor Plug Domain CH54_158 PF00593 TonB dependent receptor CH54_1580 PF00268 Ribonucleotide reductase, small chain CH54_1581 PF00571 CBS domain CH54_1581 PF00005 ABC transporter CH54_1582 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1583 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_1585 PF00929 Exonuclease CH54_1586 PF00075 RNase H CH54_1587 PF08241 Methyltransferase domain CH54_1588 PF00753 Metallo-beta-lactamase superfamily CH54_1588 PF16123 Hydroxyacylglutathione hydrolase C-terminus CH54_1589 PF01464 Transglycosylase SLT domain CH54_1589 PF01476 LysM domain CH54_159 PF02659 Putative manganese efflux pump CH54_1590 PF03372 Endonuclease/Exonuclease/phosphatase family CH54_1592 PF07690 Major Facilitator Superfamily CH54_1593 PF03466 LysR substrate binding domain CH54_1593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1594 PF00248 Aldo/keto reductase family CH54_16 PF03733 Inner membrane component domain CH54_160 PF06173 Protein of unknown function (DUF986) CH54_1600 PF00004 ATPase family associated with various cellular activities (AAA) CH54_1600 PF07724 AAA domain (Cdc48 subfamily) CH54_1600 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_1600 PF02861 Clp amino terminal domain, pathogenicity island component CH54_1600 PF17871 AAA lid domain CH54_1602 PF01479 S4 domain CH54_1602 PF00849 RNA pseudouridylate synthase CH54_1603 PF13525 Outer membrane lipoprotein CH54_1604 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH54_1605 PF00800 Prephenate dehydratase CH54_1605 PF01817 Chorismate mutase type II CH54_1606 PF01817 Chorismate mutase type II CH54_1606 PF02153 Prephenate dehydrogenase CH54_1607 PF00793 DAHP synthetase I family CH54_1608 PF04397 LytTr DNA-binding domain CH54_1608 PF00072 Response regulator receiver domain CH54_1609 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH54_161 PF03613 PTS system mannose/fructose/sorbose family IID component CH54_1610 PF04338 Protein of unknown function, DUF481 CH54_1611 PF01245 Ribosomal protein L19 CH54_1612 PF01746 tRNA (Guanine-1)-methyltransferase CH54_1613 PF01782 RimM N-terminal domain CH54_1613 PF05239 PRC-barrel domain CH54_1614 PF00886 Ribosomal protein S16 CH54_1615 PF02978 Signal peptide binding domain CH54_1615 PF02881 SRP54-type protein, helical bundle domain CH54_1615 PF00448 SRP54-type protein, GTPase domain CH54_1616 PF01578 Cytochrome C assembly protein CH54_1617 PF01595 Cyclin M transmembrane N-terminal domain CH54_1617 PF03471 Transporter associated domain CH54_1617 PF00571 CBS domain CH54_1618 PF02664 S-Ribosylhomocysteinase (LuxS) CH54_1619 PF04262 Glutamate-cysteine ligase CH54_162 PF03609 PTS system sorbose-specific iic component CH54_1620 PF09335 SNARE associated Golgi protein CH54_1621 PF13419 Haloacid dehalogenase-like hydrolase CH54_1626 PF02599 Global regulator protein family CH54_1627 PF01411 tRNA synthetases class II (A) CH54_1627 PF02272 DHHA1 domain CH54_1627 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_1628 PF02631 RecX family CH54_1629 PF00154 recA bacterial DNA recombination protein CH54_163 PF03610 PTS system fructose IIA component CH54_163 PF03830 PTS system sorbose subfamily IIB component CH54_1630 PF02464 Competence-damaged protein CH54_1631 PF07690 Major Facilitator Superfamily CH54_1632 PF02613 Nitrate reductase delta subunit CH54_1633 PF04976 DMSO reductase anchor subunit (DmsC) CH54_1634 PF12800 4Fe-4S binding domain CH54_1634 PF13247 4Fe-4S dicluster domain CH54_1635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_1635 PF00384 Molybdopterin oxidoreductase CH54_1635 PF01568 Molydopterin dinucleotide binding domain CH54_1636 PF05681 Fumarate hydratase (Fumerase) CH54_1636 PF05683 Fumarase C-terminus CH54_1637 PF13458 Periplasmic binding protein CH54_1638 PF02653 Branched-chain amino acid transport system / permease component CH54_1639 PF02653 Branched-chain amino acid transport system / permease component CH54_1639 PF11862 Domain of unknown function (DUF3382) CH54_164 PF03741 Integral membrane protein TerC family CH54_164 PF03471 Transporter associated domain CH54_1640 PF00005 ABC transporter CH54_1641 PF00005 ABC transporter CH54_1646 PF13936 Helix-turn-helix domain CH54_1646 PF04198 Putative sugar-binding domain CH54_1647 PF00106 short chain dehydrogenase CH54_1648 PF03610 PTS system fructose IIA component CH54_1649 PF03830 PTS system sorbose subfamily IIB component CH54_165 PF02048 Heat-stable enterotoxin ST CH54_1650 PF03609 PTS system sorbose-specific iic component CH54_1651 PF03613 PTS system mannose/fructose/sorbose family IID component CH54_1652 PF08240 Alcohol dehydrogenase GroES-like domain CH54_1652 PF00107 Zinc-binding dehydrogenase CH54_1653 PF01022 Bacterial regulatory protein, arsR family CH54_1654 PF03764 Elongation factor G, domain IV CH54_1654 PF00679 Elongation factor G C-terminus CH54_1654 PF03144 Elongation factor Tu domain 2 CH54_1654 PF14492 Elongation Factor G, domain II CH54_1654 PF00009 Elongation factor Tu GTP binding domain CH54_1656 PF14376 Haem-binding domain CH54_1656 PF00034 Cytochrome c CH54_1656 PF03150 Di-haem cytochrome c peroxidase CH54_1657 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_166 PF03315 Serine dehydratase beta chain CH54_166 PF03313 Serine dehydratase alpha chain CH54_1661 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_1661 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_1662 PF02321 Outer membrane efflux protein CH54_1663 PF02687 FtsX-like permease family CH54_1663 PF00005 ABC transporter CH54_1663 PF12704 MacB-like periplasmic core domain CH54_1664 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_1665 PF03412 Peptidase C39 family CH54_1665 PF00005 ABC transporter CH54_1665 PF00664 ABC transporter transmembrane region CH54_167 PF00293 NUDIX domain CH54_1670 PF00419 Fimbrial protein CH54_1671 PF00419 Fimbrial protein CH54_1673 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_1673 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_1674 PF13953 PapC C-terminal domain CH54_1674 PF13954 PapC N-terminal domain CH54_1674 PF00577 Outer membrane usher protein CH54_1675 PF00419 Fimbrial protein CH54_1676 PF00419 Fimbrial protein CH54_1679 PF05190 MutS family domain IV CH54_1679 PF00488 MutS domain V CH54_1679 PF05188 MutS domain II CH54_1679 PF01624 MutS domain I CH54_1679 PF05192 MutS domain III CH54_168 PF04715 Anthranilate synthase component I, N terminal region CH54_168 PF00425 chorismate binding enzyme CH54_1680 PF04539 Sigma-70 region 3 CH54_1680 PF04542 Sigma-70 region 2 CH54_1680 PF04545 Sigma-70, region 4 CH54_1680 PF00140 Sigma-70 factor, region 1.2 CH54_1681 PF01476 LysM domain CH54_1681 PF01551 Peptidase family M23 CH54_1683 PF01975 Survival protein SurE CH54_1684 PF01142 tRNA pseudouridine synthase D (TruD) CH54_1685 PF02542 YgbB family CH54_1686 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CH54_1687 PF04977 Septum formation initiator CH54_1688 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_1689 PF00528 Binding-protein-dependent transport system inner membrane component CH54_169 PF03701 Uncharacterised protein family (UPF0181) CH54_1690 PF00005 ABC transporter CH54_1691 PF12084 Protein of unknown function (DUF3561) CH54_1693 PF00009 Elongation factor Tu GTP binding domain CH54_1694 PF01507 Phosphoadenosine phosphosulfate reductase family CH54_1695 PF14824 Sirohaem biosynthesis protein central CH54_1695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_1695 PF10414 Sirohaem synthase dimerisation region CH54_1696 PF04389 Peptidase family M28 CH54_1697 PF01507 Phosphoadenosine phosphosulfate reductase family CH54_1698 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH54_1698 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH54_1699 PF00175 Oxidoreductase NAD-binding domain CH54_1699 PF00258 Flavodoxin CH54_1699 PF00667 FAD binding domain CH54_17 PF13361 UvrD-like helicase C-terminal domain CH54_17 PF00580 UvrD/REP helicase N-terminal domain CH54_17 PF12462 DNA helicase IV / RNA helicase N terminal CH54_170 PF02222 ATP-grasp domain CH54_1700 PF01242 6-pyruvoyl tetrahydropterin synthase CH54_1701 PF04055 Radical SAM superfamily CH54_1702 PF00080 Copper/zinc superoxide dismutase (SODC) CH54_1707 PF00113 Enolase, C-terminal TIM barrel domain CH54_1707 PF03952 Enolase, N-terminal domain CH54_1708 PF00117 Glutamine amidotransferase class-I CH54_1708 PF06418 CTP synthase N-terminus CH54_1709 PF03819 MazG nucleotide pyrophosphohydrolase domain CH54_171 PF03880 DbpA RNA binding domain CH54_171 PF00270 DEAD/DEAH box helicase CH54_171 PF00271 Helicase conserved C-terminal domain CH54_1710 PF04607 Region found in RelA / SpoT proteins CH54_1710 PF02824 TGS domain CH54_1710 PF13291 ACT domain CH54_1711 PF00672 HAMP domain CH54_1711 PF00072 Response regulator receiver domain CH54_1711 PF00512 His Kinase A (phospho-acceptor) domain CH54_1711 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH54_1711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1711 PF01627 Hpt domain CH54_1712 PF00595 PDZ domain CH54_1713 PF01966 HD domain CH54_1713 PF13286 Phosphohydrolase-associated domain CH54_1714 PF01048 Phosphorylase superfamily CH54_1715 PF01497 Periplasmic binding protein CH54_1716 PF03458 UPF0126 domain CH54_1718 PF01521 Iron-sulphur cluster biosynthesis CH54_1719 PF00654 Voltage gated chloride channel CH54_172 PF07130 YebG protein CH54_1720 PF00202 Aminotransferase class-III CH54_1721 PF01032 FecCD transport family CH54_1722 PF01497 Periplasmic binding protein CH54_1723 PF00005 ABC transporter CH54_1724 PF14814 Bifunctional transglycosylase second domain CH54_1724 PF00905 Penicillin binding protein transpeptidase domain CH54_1724 PF00912 Transglycosylase CH54_1724 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CH54_1725 PF00270 DEAD/DEAH box helicase CH54_1725 PF08482 ATP-dependent helicase C-terminal CH54_1725 PF00271 Helicase conserved C-terminal domain CH54_1725 PF04408 Helicase associated domain (HA2) CH54_1726 PF02834 LigT like Phosphoesterase CH54_1727 PF17746 SfsA N-terminal OB domain CH54_1727 PF03749 Sugar fermentation stimulation protein RE domain CH54_1728 PF01258 Prokaryotic dksA/traR C4-type zinc finger CH54_1729 PF00749 tRNA synthetases class I (E and Q), catalytic domain CH54_1730 PF01743 Poly A polymerase head domain CH54_1730 PF12626 Polymerase A arginine-rich C-terminus CH54_1730 PF12627 Probable RNA and SrmB- binding site of polymerase A CH54_1731 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CH54_1732 PF02548 Ketopantoate hydroxymethyltransferase CH54_1733 PF02569 Pantoate-beta-alanine ligase CH54_1734 PF02261 Aspartate decarboxylase CH54_1735 PF01522 Polysaccharide deacetylase CH54_1736 PF01061 ABC-2 type transporter CH54_1737 PF00005 ABC transporter CH54_1738 PF00484 Carbonic anhydrase CH54_1739 PF00156 Phosphoribosyl transferase domain CH54_174 PF13995 YebF-like protein CH54_1741 PF00394 Multicopper oxidase CH54_1741 PF07731 Multicopper oxidase CH54_1741 PF07732 Multicopper oxidase CH54_1741 PF10518 TAT (twin-arginine translocation) pathway signal sequence CH54_1742 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CH54_1743 PF17284 Spermidine synthase tetramerisation domain CH54_1744 PF02675 S-adenosylmethionine decarboxylase CH54_1745 PF07262 CDI immunity protein CH54_1746 PF13332 Hemagglutinin repeat CH54_1746 PF05594 Haemagluttinin repeat CH54_1746 PF15526 Novel toxin 21 CH54_1746 PF05860 haemagglutination activity domain CH54_1746 PF04829 Pre-toxin domain with VENN motif CH54_1747 PF06062 Uncharacterised protein family (UPF0231) CH54_1748 PF00892 EamA-like transporter family CH54_175 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CH54_175 PF00326 Prolyl oligopeptidase family CH54_1750 PF11791 Aconitate B N-terminal domain CH54_1750 PF06434 Aconitate hydratase 2 N-terminus CH54_1750 PF00330 Aconitase family (aconitate hydratase) CH54_1751 PF00593 TonB dependent receptor CH54_1751 PF07715 TonB-dependent Receptor Plug Domain CH54_1752 PF12833 Helix-turn-helix domain CH54_1752 PF01965 DJ-1/PfpI family CH54_1754 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_1754 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_1755 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CH54_1755 PF00364 Biotin-requiring enzyme CH54_1755 PF02817 e3 binding domain CH54_1756 PF00456 Transketolase, thiamine diphosphate binding domain CH54_1756 PF17831 Pyruvate dehydrogenase E1 component middle domain CH54_1757 PF00392 Bacterial regulatory proteins, gntR family CH54_1757 PF07729 FCD domain CH54_1758 PF00324 Amino acid permease CH54_1759 PF17113 Regulatory signalling modulator protein AmpE CH54_176 PF00929 Exonuclease CH54_1760 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_1761 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CH54_1761 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CH54_1762 PF07963 Prokaryotic N-terminal methylation motif CH54_1763 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CH54_1763 PF00437 Type II/IV secretion system protein CH54_1764 PF00482 Type II secretion system (T2SS), protein F CH54_1765 PF00478 IMP dehydrogenase / GMP reductase domain CH54_1766 PF01121 Dephospho-CoA kinase CH54_1767 PF07072 Cell division protein CH54_1768 PF03884 DNA gyrase inhibitor YacG CH54_1769 PF00293 NUDIX domain CH54_177 PF00561 alpha/beta hydrolase fold CH54_1770 PF07517 SecA DEAD-like domain CH54_1770 PF07516 SecA Wing and Scaffold domain CH54_1770 PF01043 SecA preprotein cross-linking domain CH54_1770 PF02810 SEC-C motif CH54_1771 PF06558 Secretion monitor precursor protein (SecM) CH54_1773 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CH54_1774 PF12327 FtsZ family, C-terminal domain CH54_1774 PF00091 Tubulin/FtsZ family, GTPase domain CH54_1775 PF02491 SHS2 domain inserted in FTSA CH54_1776 PF03799 Cell division protein FtsQ CH54_1776 PF08478 POTRA domain, FtsQ-type CH54_1777 PF07478 D-ala D-ala ligase C-terminus CH54_1777 PF01820 D-ala D-ala ligase N-terminus CH54_1778 PF01225 Mur ligase family, catalytic domain CH54_1778 PF02875 Mur ligase family, glutamate ligase domain CH54_1778 PF08245 Mur ligase middle domain CH54_1779 PF03033 Glycosyltransferase family 28 N-terminal domain CH54_1779 PF04101 Glycosyltransferase family 28 C-terminal domain CH54_178 PF06440 DNA polymerase III, theta subunit CH54_1780 PF01098 Cell cycle protein CH54_1781 PF08245 Mur ligase middle domain CH54_1781 PF02875 Mur ligase family, glutamate ligase domain CH54_1782 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CH54_1782 PF00953 Glycosyl transferase family 4 CH54_1783 PF01225 Mur ligase family, catalytic domain CH54_1783 PF02875 Mur ligase family, glutamate ligase domain CH54_1783 PF08245 Mur ligase middle domain CH54_1784 PF08245 Mur ligase middle domain CH54_1784 PF02875 Mur ligase family, glutamate ligase domain CH54_1784 PF01225 Mur ligase family, catalytic domain CH54_1785 PF03717 Penicillin-binding Protein dimerisation domain CH54_1785 PF00905 Penicillin binding protein transpeptidase domain CH54_1786 PF04999 Cell division protein FtsL CH54_1787 PF01795 MraW methylase family CH54_1788 PF02381 MraZ protein, putative antitoxin-like CH54_1789 PF06610 L-alanine exporter CH54_179 PF00210 Ferritin-like domain CH54_1790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_1790 PF00356 Bacterial regulatory proteins, lacI family CH54_1791 PF10369 Small subunit of acetolactate synthase CH54_1792 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_1792 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_1792 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_1793 PF00501 AMP-binding enzyme CH54_1794 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1794 PF03466 LysR substrate binding domain CH54_1796 PF08502 LeuA allosteric (dimerisation) domain CH54_1796 PF00682 HMGL-like CH54_1797 PF00180 Isocitrate/isopropylmalate dehydrogenase CH54_1798 PF00330 Aconitase family (aconitate hydratase) CH54_1799 PF00694 Aconitase C-terminal domain CH54_180 PF04234 CopC domain CH54_1801 PF01212 Beta-eliminating lyase CH54_1802 PF07690 Major Facilitator Superfamily CH54_1804 PF04055 Radical SAM superfamily CH54_1805 PF12793 Sugar transport-related sRNA regulator N-term CH54_1805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_1807 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1808 PF00005 ABC transporter CH54_1809 PF09335 SNARE associated Golgi protein CH54_181 PF05425 Copper resistance protein D CH54_1810 PF03104 DNA polymerase family B, exonuclease domain CH54_1810 PF00136 DNA polymerase family B CH54_1811 PF18337 RapA N-terminal Tudor like domain CH54_1811 PF12137 RNA polymerase recycling family C-terminal CH54_1811 PF00271 Helicase conserved C-terminal domain CH54_1811 PF00176 SNF2 family N-terminal domain CH54_1811 PF18339 RapA N-terminal Tudor like domain 1 CH54_1812 PF00849 RNA pseudouridylate synthase CH54_1813 PF00226 DnaJ domain CH54_1813 PF05099 Tellurite resistance protein TerB CH54_1814 PF03968 OstA-like protein CH54_1814 PF04453 LPS transport system D CH54_1815 PF09312 SurA N-terminal domain CH54_1815 PF00639 PPIC-type PPIASE domain CH54_1816 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CH54_1817 PF00398 Ribosomal RNA adenine dimethylase CH54_1818 PF04379 ApaG domain CH54_1819 PF00149 Calcineurin-like phosphoesterase CH54_182 PF10709 Protein of unknown function (DUF2511) CH54_1822 PF00186 Dihydrofolate reductase CH54_1823 PF12821 Threonine/Serine exporter, ThrE CH54_1824 PF06738 Putative threonine/serine exporter CH54_1825 PF01810 LysE type translocator CH54_1826 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH54_1826 PF02142 MGS-like domain CH54_1826 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH54_1827 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CH54_1827 PF00117 Glutamine amidotransferase class-I CH54_1828 PF05173 Dihydrodipicolinate reductase, C-terminus CH54_1828 PF01113 Dihydrodipicolinate reductase, N-terminus CH54_1829 PF02401 LytB protein CH54_1830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_1831 PF01252 Signal peptidase (SPase) II CH54_1832 PF00133 tRNA synthetases class I (I, L, M and V) CH54_1832 PF06827 Zinc finger found in FPG and IleRS CH54_1832 PF08264 Anticodon-binding domain of tRNA CH54_1833 PF06574 FAD synthetase CH54_1833 PF01687 Riboflavin kinase CH54_1834 PF01649 Ribosomal protein S20 CH54_1835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1835 PF03466 LysR substrate binding domain CH54_1836 PF06965 Na+/H+ antiporter 1 CH54_1837 PF01556 DnaJ C terminal domain CH54_1837 PF00226 DnaJ domain CH54_1837 PF00684 DnaJ central domain CH54_1838 PF00012 Hsp70 protein CH54_1839 PF01184 GPR1/FUN34/yaaH family CH54_1842 PF07690 Major Facilitator Superfamily CH54_1843 PF00994 Probable molybdopterin binding domain CH54_1844 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH54_1845 PF03883 Peroxide stress protein YaaA CH54_1846 PF00291 Pyridoxal-phosphate dependent enzyme CH54_1846 PF14821 Threonine synthase N terminus CH54_1847 PF00288 GHMP kinases N terminal domain CH54_1847 PF08544 GHMP kinases C terminal CH54_1848 PF01842 ACT domain CH54_1848 PF13840 ACT domain CH54_1848 PF00742 Homoserine dehydrogenase CH54_1848 PF03447 Homoserine dehydrogenase, NAD binding domain CH54_1848 PF00696 Amino acid kinase family CH54_1849 PF00072 Response regulator receiver domain CH54_1849 PF00486 Transcriptional regulatory protein, C terminal CH54_185 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CH54_1850 PF05981 CreA protein CH54_1851 PF00300 Histidine phosphatase superfamily (branch 1) CH54_1852 PF06445 GyrI-like small molecule binding domain CH54_1852 PF12833 Helix-turn-helix domain CH54_1853 PF01931 Protein of unknown function DUF84 CH54_1854 PF01371 Trp repressor protein CH54_1855 PF14718 Soluble lytic murein transglycosylase L domain CH54_1855 PF01464 Transglycosylase SLT domain CH54_1856 PF00690 Cation transporter/ATPase, N-terminus CH54_1856 PF00689 Cation transporting ATPase, C-terminus CH54_1857 PF00005 ABC transporter CH54_1857 PF12848 ABC transporter CH54_1858 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1858 PF03466 LysR substrate binding domain CH54_1859 PF00107 Zinc-binding dehydrogenase CH54_1859 PF08240 Alcohol dehydrogenase GroES-like domain CH54_186 PF04221 RelB antitoxin CH54_1860 PF13521 AAA domain CH54_1860 PF01381 Helix-turn-helix CH54_1862 PF18073 Rubredoxin metal binding domain CH54_1863 PF18429 Domain of unknown function (DUF5609) CH54_1864 PF10144 Bacterial virulence factor haemolysin CH54_1865 PF01048 Phosphorylase superfamily CH54_1866 PF01676 Metalloenzyme superfamily CH54_1867 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CH54_1867 PF00591 Glycosyl transferase family, a/b domain CH54_1867 PF02885 Glycosyl transferase family, helical bundle domain CH54_1868 PF01791 DeoC/LacD family aldolase CH54_1869 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_1869 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_1869 PF07670 Nucleoside recognition CH54_1870 PF01026 TatD related DNase CH54_1871 PF01734 Patatin-like phospholipase CH54_1872 PF07043 Protein of unknown function (DUF1328) CH54_1873 PF04972 BON domain CH54_1874 PF16658 Class II release factor RF3, C-terminal domain CH54_1874 PF03144 Elongation factor Tu domain 2 CH54_1874 PF00009 Elongation factor Tu GTP binding domain CH54_1875 PF00583 Acetyltransferase (GNAT) family CH54_1876 PF03603 DNA polymerase III psi subunit CH54_1877 PF05175 Methyltransferase small domain CH54_1877 PF08468 Methyltransferase small domain N-terminal CH54_1878 PF00248 Aldo/keto reductase family CH54_1879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_1879 PF03466 LysR substrate binding domain CH54_188 PF00144 Beta-lactamase CH54_1882 PF07256 Protein of unknown function (DUF1435) CH54_1883 PF00990 Diguanylate cyclase, GGDEF domain CH54_1884 PF00158 Sigma-54 interaction domain CH54_1884 PF00989 PAS fold CH54_1884 PF02954 Bacterial regulatory protein, Fis family CH54_1889 PF02543 Carbamoyltransferase N-terminus CH54_1889 PF16861 Carbamoyltransferase C-terminus CH54_189 PF01479 S4 domain CH54_189 PF00849 RNA pseudouridylate synthase CH54_1891 PF03610 PTS system fructose IIA component CH54_1891 PF00391 PEP-utilising enzyme, mobile domain CH54_1891 PF05524 PEP-utilising enzyme, N-terminal CH54_1891 PF00381 PTS HPr component phosphorylation site CH54_1892 PF02734 DAK2 domain CH54_1893 PF02733 Dak1 domain CH54_1894 PF00465 Iron-containing alcohol dehydrogenase CH54_1895 PF00873 AcrB/AcrD/AcrF family CH54_1896 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_1898 PF13520 Amino acid permease CH54_19 PF02142 MGS-like domain CH54_190 PF03616 Sodium/glutamate symporter CH54_1900 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_1901 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_1901 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_1902 PF04198 Putative sugar-binding domain CH54_1902 PF00325 Bacterial regulatory proteins, crp family CH54_1903 PF00005 ABC transporter CH54_1904 PF02653 Branched-chain amino acid transport system / permease component CH54_1905 PF02653 Branched-chain amino acid transport system / permease component CH54_1906 PF13407 Periplasmic binding protein domain CH54_1907 PF01791 DeoC/LacD family aldolase CH54_1908 PF03992 Antibiotic biosynthesis monooxygenase CH54_1909 PF10696 Protein of unknown function (DUF2501) CH54_191 PF00665 Integrase core domain CH54_1914 PF00583 Acetyltransferase (GNAT) family CH54_1916 PF08479 POTRA domain, ShlB-type CH54_1916 PF17287 POTRA domain CH54_1916 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_1917 PF13332 Hemagglutinin repeat CH54_1917 PF04829 Pre-toxin domain with VENN motif CH54_1917 PF05860 haemagglutination activity domain CH54_1917 PF13018 Extended Signal Peptide of Type V secretion system CH54_192 PF01527 Transposase CH54_1920 PF04829 Pre-toxin domain with VENN motif CH54_1920 PF05860 haemagglutination activity domain CH54_1920 PF13332 Hemagglutinin repeat CH54_1920 PF13018 Extended Signal Peptide of Type V secretion system CH54_1922 PF01527 Transposase CH54_1923 PF00665 Integrase core domain CH54_1925 PF02384 N-6 DNA Methylase CH54_1929 PF03739 Lipopolysaccharide export system permease LptF/LptG CH54_1930 PF03739 Lipopolysaccharide export system permease LptF/LptG CH54_1931 PF00883 Cytosol aminopeptidase family, catalytic domain CH54_1931 PF02789 Cytosol aminopeptidase family, N-terminal domain CH54_1932 PF04364 DNA polymerase III chi subunit, HolC CH54_1933 PF10458 Valyl tRNA synthetase tRNA binding arm CH54_1933 PF00133 tRNA synthetases class I (I, L, M and V) CH54_1933 PF08264 Anticodon-binding domain of tRNA CH54_1934 PF00583 Acetyltransferase (GNAT) family CH54_1935 PF06877 Regulator of ribonuclease activity B CH54_1936 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH54_1936 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH54_1937 PF04074 YhcH/YjgK/YiaL CH54_1939 PF00528 Binding-protein-dependent transport system inner membrane component CH54_1941 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_1941 PF00005 ABC transporter CH54_1942 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_1942 PF00005 ABC transporter CH54_1943 PF13597 Anaerobic ribonucleoside-triphosphate reductase CH54_1943 PF03477 ATP cone domain CH54_1945 PF00392 Bacterial regulatory proteins, gntR family CH54_1945 PF07702 UTRA domain CH54_1946 PF06754 Phosphonate metabolism protein PhnG CH54_1947 PF05845 Bacterial phosphonate metabolism protein (PhnH) CH54_1948 PF05861 Bacterial phosphonate metabolism protein (PhnI) CH54_1949 PF06007 Phosphonate metabolism protein PhnJ CH54_1950 PF00005 ABC transporter CH54_1951 PF00005 ABC transporter CH54_1952 PF07969 Amidohydrolase family CH54_1954 PF12706 Beta-lactamase superfamily domain CH54_1955 PF13460 NAD(P)H-binding CH54_1958 PF17912 MalK OB fold domain CH54_1958 PF00005 ABC transporter CH54_1958 PF03459 TOBE domain CH54_1959 PF00528 Binding-protein-dependent transport system inner membrane component CH54_196 PF00924 Mechanosensitive ion channel CH54_1961 PF13416 Bacterial extracellular solute-binding protein CH54_1964 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH54_1964 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH54_1964 PF01276 Orn/Lys/Arg decarboxylase, major domain CH54_1965 PF13520 Amino acid permease CH54_1966 PF13508 Acetyltransferase (GNAT) domain CH54_1967 PF01541 GIY-YIG catalytic domain CH54_1971 PF00296 Luciferase-like monooxygenase CH54_1972 PF03880 DbpA RNA binding domain CH54_1972 PF12343 Cold shock protein DEAD box A CH54_1972 PF00270 DEAD/DEAH box helicase CH54_1972 PF00271 Helicase conserved C-terminal domain CH54_1973 PF07719 Tetratricopeptide repeat CH54_1973 PF13181 Tetratricopeptide repeat CH54_1974 PF00575 S1 RNA binding domain CH54_1974 PF01138 3' exoribonuclease family, domain 1 CH54_1974 PF00013 KH domain CH54_1974 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CH54_1974 PF03725 3' exoribonuclease family, domain 2 CH54_1975 PF00312 Ribosomal protein S15 CH54_1976 PF09157 Pseudouridine synthase II TruB, C-terminal CH54_1976 PF01509 TruB family pseudouridylate synthase (N terminal domain) CH54_1976 PF16198 tRNA pseudouridylate synthase B C-terminal domain CH54_1977 PF02033 Ribosome-binding factor A CH54_1978 PF00009 Elongation factor Tu GTP binding domain CH54_1978 PF08364 Bacterial translation initiation factor IF-2 associated region CH54_1978 PF03144 Elongation factor Tu domain 2 CH54_1978 PF11987 Translation-initiation factor 2 CH54_1978 PF04760 Translation initiation factor IF-2, N-terminal region CH54_1979 PF13184 NusA-like KH domain CH54_1979 PF00575 S1 RNA binding domain CH54_1979 PF08529 NusA N-terminal domain CH54_1980 PF02576 RimP N-terminal domain CH54_1980 PF17384 RimP C-terminal SH3 domain CH54_1983 PF03840 Preprotein translocase SecG subunit CH54_1984 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CH54_1984 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CH54_1984 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CH54_1984 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CH54_1985 PF00809 Pterin binding enzyme CH54_1986 PF06480 FtsH Extracellular CH54_1986 PF01434 Peptidase family M41 CH54_1986 PF17862 AAA+ lid domain CH54_1986 PF00004 ATPase family associated with various cellular activities (AAA) CH54_1987 PF01728 FtsJ-like methyltransferase CH54_1988 PF01985 CRS1 / YhbY (CRM) domain CH54_1989 PF03449 Transcription elongation factor, N-terminal CH54_1989 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_1990 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CH54_1991 PF00486 Transcriptional regulatory protein, C terminal CH54_1991 PF00072 Response regulator receiver domain CH54_1992 PF00672 HAMP domain CH54_1992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_1992 PF00512 His Kinase A (phospho-acceptor) domain CH54_1993 PF01018 GTP1/OBG CH54_1993 PF01926 50S ribosome-binding GTPase CH54_1994 PF00892 EamA-like transporter family CH54_1995 PF01016 Ribosomal L27 protein CH54_1996 PF00829 Ribosomal prokaryotic L21 protein CH54_1997 PF00348 Polyprenyl synthetase CH54_1999 PF13693 Winged helix-turn-helix DNA-binding CH54_2 PF12848 ABC transporter CH54_2 PF16326 ABC transporter C-terminal domain CH54_2 PF00005 ABC transporter CH54_20 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CH54_2000 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CH54_2000 PF00056 lactate/malate dehydrogenase, NAD binding domain CH54_2001 PF01316 Arginine repressor, DNA binding domain CH54_2001 PF02863 Arginine repressor, C-terminal domain CH54_2002 PF07338 Protein of unknown function (DUF1471) CH54_2004 PF01225 Mur ligase family, catalytic domain CH54_2004 PF02875 Mur ligase family, glutamate ligase domain CH54_2004 PF08245 Mur ligase middle domain CH54_2005 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CH54_2006 PF00672 HAMP domain CH54_2006 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_2006 PF02203 Tar ligand binding domain homologue CH54_2007 PF00719 Inorganic pyrophosphatase CH54_2008 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CH54_2009 PF04357 TamB, inner membrane protein subunit of TAM complex CH54_2010 PF17243 POTRA domain TamA domain 1 CH54_2010 PF07244 Surface antigen variable number repeat CH54_2010 PF01103 Surface antigen CH54_2011 PF01625 Peptide methionine sulfoxide reductase CH54_2012 PF00571 CBS domain CH54_2012 PF03471 Transporter associated domain CH54_2012 PF01595 Cyclin M transmembrane N-terminal domain CH54_2013 PF06526 Protein of unknown function (DUF1107) CH54_2014 PF00459 Inositol monophosphatase family CH54_2015 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CH54_2016 PF00149 Calcineurin-like phosphoesterase CH54_2016 PF02872 5'-nucleotidase, C-terminal domain CH54_2018 PF04405 Domain of Unknown function (DUF542) CH54_2018 PF01814 Hemerythrin HHE cation binding domain CH54_2019 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH54_2019 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_2020 PF08525 Opacity-associated protein A N-terminal motif CH54_2020 PF04225 Opacity-associated protein A LysM-like domain CH54_2022 PF01281 Ribosomal protein L9, N-terminal domain CH54_2022 PF03948 Ribosomal protein L9, C-terminal domain CH54_2023 PF01084 Ribosomal protein S18 CH54_2024 PF00436 Single-strand binding protein family CH54_2025 PF01250 Ribosomal protein S6 CH54_2027 PF00326 Prolyl oligopeptidase family CH54_2028 PF07338 Protein of unknown function (DUF1471) CH54_2029 PF18158 Adaptive response protein AidB N-terminal domain CH54_2029 PF02770 Acyl-CoA dehydrogenase, middle domain CH54_2029 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH54_203 PF07351 Protein of unknown function (DUF1480) CH54_2030 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH54_2030 PF00588 SpoU rRNA Methylase family CH54_2031 PF00773 RNB domain CH54_2031 PF00575 S1 RNA binding domain CH54_2031 PF17876 Cold shock domain CH54_2031 PF08206 Ribonuclease B OB domain CH54_2031 PF08461 Ribonuclease R winged-helix domain CH54_2032 PF02082 Transcriptional regulator CH54_2033 PF00709 Adenylosuccinate synthetase CH54_2034 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CH54_2035 PF01145 SPFH domain / Band 7 family CH54_2036 PF12221 Bacterial membrane protein N terminal CH54_2036 PF01145 SPFH domain / Band 7 family CH54_2037 PF16360 GTP-binding GTPase Middle Region CH54_2037 PF13167 GTP-binding GTPase N-terminal CH54_2037 PF01926 50S ribosome-binding GTPase CH54_2038 PF17209 Hfq protein CH54_204 PF00563 EAL domain CH54_204 PF01590 GAF domain CH54_204 PF00990 Diguanylate cyclase, GGDEF domain CH54_204 PF00360 Phytochrome region CH54_2040 PF08676 MutL C terminal dimerisation domain CH54_2040 PF01119 DNA mismatch repair protein, C-terminal domain CH54_2041 PF01520 N-acetylmuramoyl-L-alanine amidase CH54_2042 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CH54_2043 PF01256 Carbohydrate kinase CH54_2043 PF03853 YjeF-related protein N-terminus CH54_2044 PF08331 Domain of unknown function (DUF1730) CH54_2048 PF00929 Exonuclease CH54_2049 PF03193 RsgA GTPase CH54_2050 PF02666 Phosphatidylserine decarboxylase CH54_2051 PF00924 Mechanosensitive ion channel CH54_2051 PF12795 Mechanosensitive ion channel porin domain CH54_2051 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_2052 PF00152 tRNA synthetases class II (D, K and N) CH54_2053 PF02910 Fumarate reductase flavoprotein C-term CH54_2053 PF00890 FAD binding domain CH54_2054 PF13085 2Fe-2S iron-sulfur cluster binding domain CH54_2054 PF13183 4Fe-4S dicluster domain CH54_2055 PF02300 Fumarate reductase subunit C CH54_2056 PF02313 Fumarate reductase subunit D CH54_2057 PF08212 Lipocalin-like domain CH54_2058 PF00893 Small Multidrug Resistance protein CH54_2059 PF08085 Entericidin EcnA/B family CH54_2060 PF08207 Elongation factor P (EF-P) KOW-like domain CH54_2060 PF01132 Elongation factor P (EF-P) OB domain CH54_2060 PF09285 Elongation factor P, C-terminal CH54_2061 PF04055 Radical SAM superfamily CH54_2062 PF13698 Domain of unknown function (DUF4156) CH54_2063 PF00118 TCP-1/cpn60 chaperonin family CH54_2064 PF00166 Chaperonin 10 Kd subunit CH54_2065 PF04186 FxsA cytoplasmic membrane protein CH54_2066 PF10415 Fumarase C C-terminus CH54_2066 PF00206 Lyase CH54_2067 PF03605 Anaerobic c4-dicarboxylate membrane transporter CH54_2068 PF03091 CutA1 divalent ion tolerance protein CH54_2069 PF02683 Cytochrome C biogenesis protein transmembrane region CH54_2069 PF11412 Disulphide bond corrector protein DsbC CH54_2070 PF00384 Molybdopterin oxidoreductase CH54_2070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_2070 PF01568 Molydopterin dinucleotide binding domain CH54_2071 PF12800 4Fe-4S binding domain CH54_2071 PF13247 4Fe-4S dicluster domain CH54_2072 PF13247 4Fe-4S dicluster domain CH54_2072 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH54_2072 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_2074 PF07690 Major Facilitator Superfamily CH54_2075 PF08666 SAF domain CH54_2075 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH54_2076 PF13556 PucR C-terminal helix-turn-helix domain CH54_2076 PF05651 Putative sugar diacid recognition CH54_2076 PF17853 GGDEF-like domain CH54_2077 PF02595 Glycerate kinase family CH54_2078 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH54_2078 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CH54_2079 PF03328 HpcH/HpaI aldolase/citrate lyase family CH54_2082 PF00589 Phage integrase family CH54_2087 PF00665 Integrase core domain CH54_2087 PF13936 Helix-turn-helix domain CH54_2089 PF13361 UvrD-like helicase C-terminal domain CH54_2089 PF00580 UvrD/REP helicase N-terminal domain CH54_2090 PF13476 AAA domain CH54_2092 PF01223 DNA/RNA non-specific endonuclease CH54_2093 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_21 PF13380 CoA binding domain CH54_2103 PF05973 Phage derived protein Gp49-like (DUF891) CH54_2104 PF00665 Integrase core domain CH54_2105 PF01527 Transposase CH54_211 PF07690 Major Facilitator Superfamily CH54_2119 PF01548 Transposase CH54_2119 PF02371 Transposase IS116/IS110/IS902 family CH54_212 PF03466 LysR substrate binding domain CH54_212 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_213 PF02470 MlaD protein CH54_214 PF04403 Paraquat-inducible protein A CH54_2147 PF00665 Integrase core domain CH54_2148 PF01527 Transposase CH54_215 PF13185 GAF domain CH54_2156 PF03796 DnaB-like helicase C terminal domain CH54_2156 PF00772 DnaB-like helicase N terminal domain CH54_2157 PF13614 AAA domain CH54_2159 PF10636 Hemin uptake protein hemP CH54_216 PF17516 ProQ C-terminal domain CH54_216 PF04352 ProQ/FINO family CH54_2160 PF07715 TonB-dependent Receptor Plug Domain CH54_2160 PF00593 TonB dependent receptor CH54_2161 PF05171 Haemin-degrading HemS.ChuX domain CH54_2162 PF01497 Periplasmic binding protein CH54_2163 PF01032 FecCD transport family CH54_2164 PF00005 ABC transporter CH54_2165 PF00392 Bacterial regulatory proteins, gntR family CH54_2165 PF00155 Aminotransferase class I and II CH54_2167 PF07715 TonB-dependent Receptor Plug Domain CH54_2167 PF00593 TonB dependent receptor CH54_2168 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_2168 PF12795 Mechanosensitive ion channel porin domain CH54_2168 PF00924 Mechanosensitive ion channel CH54_2169 PF01206 Sulfurtransferase TusA CH54_217 PF11818 C-terminal domain of tail specific protease (DUF3340) CH54_217 PF17804 Tail specific protease N-terminal domain CH54_217 PF03572 Peptidase family S41 CH54_217 PF00595 PDZ domain CH54_2170 PF04143 Sulphur transport CH54_2171 PF01312 FlhB HrpN YscU SpaS Family CH54_2172 PF01311 Bacterial export proteins, family 1 CH54_2173 PF01313 Bacterial export proteins, family 3 CH54_2174 PF00813 FliP family CH54_2175 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_2178 PF18269 T3SS EscN ATPase C-terminal domain CH54_2178 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_2179 PF00771 FHIPEP family CH54_218 PF01435 Peptidase family M48 CH54_2181 PF07201 HrpJ-like domain CH54_2184 PF01514 Secretory protein of YscJ/FliF family CH54_2188 PF14525 AraC-binding-like domain CH54_2188 PF12833 Helix-turn-helix domain CH54_2193 PF04888 Secretion system effector C (SseC) like family CH54_2195 PF03433 EspA-like secreted protein CH54_22 PF08755 Hemimethylated DNA-binding protein YccV like CH54_220 PF07690 Major Facilitator Superfamily CH54_2201 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CH54_2201 PF00672 HAMP domain CH54_2201 PF00512 His Kinase A (phospho-acceptor) domain CH54_2201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2201 PF01627 Hpt domain CH54_2201 PF00072 Response regulator receiver domain CH54_2202 PF00196 Bacterial regulatory proteins, luxR family CH54_2202 PF00072 Response regulator receiver domain CH54_2203 PF00375 Sodium:dicarboxylate symporter family CH54_2204 PF16177 Acetyl-coenzyme A synthetase N-terminus CH54_2204 PF13193 AMP-binding enzyme C-terminal domain CH54_2204 PF00501 AMP-binding enzyme CH54_2205 PF04341 Protein of unknown function, DUF485 CH54_2206 PF00474 Sodium:solute symporter family CH54_221 PF14583 Oligogalacturonate lyase CH54_2213 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_2214 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CH54_2214 PF01488 Shikimate / quinate 5-dehydrogenase CH54_2214 PF08501 Shikimate dehydrogenase substrate binding domain CH54_2215 PF01300 Telomere recombination CH54_2216 PF01396 Topoisomerase DNA binding C4 zinc finger CH54_2217 PF04361 Protein of unknown function (DUF494) CH54_2218 PF02481 DNA recombination-mediator protein A CH54_2218 PF17782 DprA winged helix domain CH54_2219 PF01327 Polypeptide deformylase CH54_222 PF09339 IclR helix-turn-helix domain CH54_222 PF01614 Bacterial transcriptional regulator CH54_2220 PF02911 Formyl transferase, C-terminal domain CH54_2220 PF00551 Formyl transferase CH54_2221 PF01189 16S rRNA methyltransferase RsmB/F CH54_2221 PF01029 NusB family CH54_2222 PF02080 TrkA-C domain CH54_2222 PF02254 TrkA-N domain CH54_2223 PF01741 Large-conductance mechanosensitive channel, MscL CH54_2224 PF03889 Alternative ribosome-rescue factor A CH54_2225 PF13411 MerR HTH family regulatory protein CH54_2226 PF09350 Domain of unknown function (DUF1992) CH54_2227 PF01196 Ribosomal protein L17 CH54_2228 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CH54_2228 PF01000 RNA polymerase Rpb3/RpoA insert domain CH54_2228 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CH54_2229 PF01479 S4 domain CH54_2229 PF00163 Ribosomal protein S4/S9 N-terminal domain CH54_223 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_2230 PF00411 Ribosomal protein S11 CH54_2231 PF00416 Ribosomal protein S13/S18 CH54_2232 PF00444 Ribosomal protein L36 CH54_2233 PF00344 SecY translocase CH54_2234 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CH54_2235 PF00327 Ribosomal protein L30p/L7e CH54_2236 PF00333 Ribosomal protein S5, N-terminal domain CH54_2236 PF03719 Ribosomal protein S5, C-terminal domain CH54_2237 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CH54_2238 PF00347 Ribosomal protein L6 CH54_2239 PF00410 Ribosomal protein S8 CH54_2240 PF00253 Ribosomal protein S14p/S29e CH54_2241 PF00673 ribosomal L5P family C-terminus CH54_2241 PF00281 Ribosomal protein L5 CH54_2242 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CH54_2242 PF00467 KOW motif CH54_2243 PF00238 Ribosomal protein L14p/L23e CH54_2244 PF00366 Ribosomal protein S17 CH54_2245 PF00831 Ribosomal L29 protein CH54_2246 PF00252 Ribosomal protein L16p/L10e CH54_2247 PF00189 Ribosomal protein S3, C-terminal domain CH54_2247 PF07650 KH domain CH54_2248 PF00237 Ribosomal protein L22p/L17e CH54_2249 PF00203 Ribosomal protein S19 CH54_225 PF04307 LexA-binding, inner membrane-associated putative hydrolase CH54_2250 PF03947 Ribosomal Proteins L2, C-terminal domain CH54_2250 PF00181 Ribosomal Proteins L2, RNA binding domain CH54_2251 PF00276 Ribosomal protein L23 CH54_2252 PF00573 Ribosomal protein L4/L1 family CH54_2253 PF00297 Ribosomal protein L3 CH54_2254 PF00338 Ribosomal protein S10p/S20e CH54_2255 PF00210 Ferritin-like domain CH54_2256 PF04324 BFD-like [2Fe-2S] binding domain CH54_2257 PF03144 Elongation factor Tu domain 2 CH54_2257 PF03143 Elongation factor Tu C-terminal domain CH54_2257 PF00009 Elongation factor Tu GTP binding domain CH54_2258 PF00009 Elongation factor Tu GTP binding domain CH54_2258 PF14492 Elongation Factor G, domain II CH54_2258 PF03764 Elongation factor G, domain IV CH54_2258 PF03144 Elongation factor Tu domain 2 CH54_2258 PF00679 Elongation factor G C-terminus CH54_2259 PF00177 Ribosomal protein S7p/S5e CH54_226 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH54_2260 PF00164 Ribosomal protein S12/S23 CH54_2261 PF04077 DsrH like protein CH54_2262 PF02635 DsrE/DsrF-like family CH54_2263 PF02635 DsrE/DsrF-like family CH54_2264 PF08348 YheO-like PAS domain CH54_2264 PF13309 HTH domain CH54_2265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CH54_2265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_2266 PF04102 SlyX CH54_2267 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_2268 PF09526 Probable metal-binding protein (DUF2387) CH54_2269 PF00999 Sodium/hydrogen exchanger family CH54_2269 PF02254 TrkA-N domain CH54_227 PF01547 Bacterial extracellular solute-binding protein CH54_2270 PF02525 Flavodoxin-like fold CH54_2271 PF00005 ABC transporter CH54_2271 PF12848 ABC transporter CH54_2273 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CH54_2275 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2276 PF00005 ABC transporter CH54_2277 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CH54_2278 PF02567 Phenazine biosynthesis-like protein CH54_2279 PF01810 LysE type translocator CH54_228 PF17912 MalK OB fold domain CH54_228 PF00005 ABC transporter CH54_228 PF03459 TOBE domain CH54_2280 PF00561 alpha/beta hydrolase fold CH54_2281 PF06794 Uncharacterised protein family (UPF0270) CH54_2282 PF00485 Phosphoribulokinase / Uridine kinase family CH54_2283 PF02566 OsmC-like protein CH54_2284 PF00027 Cyclic nucleotide-binding domain CH54_2284 PF13545 Crp-like helix-turn-helix domain CH54_2285 PF12805 FUSC-like inner membrane protein yccS CH54_2286 PF00202 Aminotransferase class-III CH54_2287 PF00117 Glutamine amidotransferase class-I CH54_2289 PF05872 Bacterial protein of unknown function (DUF853) CH54_229 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2290 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH54_2291 PF02056 Family 4 glycosyl hydrolase CH54_2291 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH54_2292 PF00356 Bacterial regulatory proteins, lacI family CH54_2293 PF07690 Major Facilitator Superfamily CH54_2294 PF07969 Amidohydrolase family CH54_2296 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CH54_2296 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CH54_2296 PF04324 BFD-like [2Fe-2S] binding domain CH54_2296 PF18267 Rubredoxin NAD+ reductase C-terminal domain CH54_2296 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_2297 PF13806 Rieske-like [2Fe-2S] domain CH54_2298 PF01226 Formate/nitrite transporter CH54_2299 PF14824 Sirohaem biosynthesis protein central CH54_2299 PF10414 Sirohaem synthase dimerisation region CH54_2299 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_23 PF10672 S-adenosylmethionine-dependent methyltransferase CH54_23 PF17785 PUA-like domain CH54_230 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2300 PF00579 tRNA synthetases class I (W and Y) CH54_2301 PF13419 Haloacid dehalogenase-like hydrolase CH54_2302 PF00834 Ribulose-phosphate 3 epimerase family CH54_2303 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH54_2304 PF05036 Sporulation related domain CH54_2305 PF01761 3-dehydroquinate synthase CH54_2306 PF01202 Shikimate kinase CH54_2307 PF00263 Bacterial type II and III secretion system protein CH54_2307 PF03958 Bacterial type II/III secretion system short domain CH54_231 PF06917 Periplasmic pectate lyase CH54_2312 PF00912 Transglycosylase CH54_2312 PF17092 Penicillin-binding protein OB-like domain CH54_2312 PF00905 Penicillin binding protein transpeptidase domain CH54_2313 PF00293 NUDIX domain CH54_2314 PF07095 Intracellular growth attenuator protein IgaA CH54_2315 PF13419 Haloacid dehalogenase-like hydrolase CH54_2316 PF01479 S4 domain CH54_2317 PF01430 Hsp33 protein CH54_2318 PF01293 Phosphoenolpyruvate carboxykinase CH54_2319 PF00512 His Kinase A (phospho-acceptor) domain CH54_2319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2319 PF00672 HAMP domain CH54_2320 PF00486 Transcriptional regulatory protein, C terminal CH54_2320 PF00072 Response regulator receiver domain CH54_2321 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_2321 PF03449 Transcription elongation factor, N-terminal CH54_2326 PF17674 HHH domain CH54_2326 PF00575 S1 RNA binding domain CH54_2326 PF09371 Tex-like protein N-terminal domain CH54_2326 PF16921 Tex protein YqgF-like domain CH54_2327 PF04023 FeoA domain CH54_2328 PF02421 Ferrous iron transport protein B CH54_2328 PF07670 Nucleoside recognition CH54_2328 PF17910 FeoB cytosolic helical domain CH54_2328 PF07664 Ferrous iron transport protein B C terminus CH54_2329 PF09012 FeoC like transcriptional regulator CH54_233 PF04962 KduI/IolB family CH54_2330 PF07338 Protein of unknown function (DUF1471) CH54_2331 PF00561 alpha/beta hydrolase fold CH54_2332 PF00156 Phosphoribosyl transferase domain CH54_2333 PF01106 NifU-like domain CH54_2333 PF01521 Iron-sulphur cluster biosynthesis CH54_2334 PF02446 4-alpha-glucanotransferase CH54_2335 PF00343 Carbohydrate phosphorylase CH54_2336 PF17874 MalT-like TPR region CH54_2336 PF00196 Bacterial regulatory proteins, luxR family CH54_2337 PF00581 Rhodanese-like domain CH54_2338 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CH54_2338 PF01694 Rhomboid family CH54_2339 PF08220 DeoR-like helix-turn-helix domain CH54_2339 PF00455 DeoR C terminal sensor domain CH54_234 PF07883 Cupin domain CH54_2342 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CH54_2342 PF01266 FAD dependent oxidoreductase CH54_2343 PF00343 Carbohydrate phosphorylase CH54_2344 PF08323 Starch synthase catalytic domain CH54_2344 PF00534 Glycosyl transferases group 1 CH54_2345 PF00483 Nucleotidyl transferase CH54_2346 PF00128 Alpha amylase, catalytic domain CH54_2346 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH54_2346 PF18390 Glycogen debranching enzyme C-terminal domain CH54_2347 PF00128 Alpha amylase, catalytic domain CH54_2347 PF02806 Alpha amylase, C-terminal all-beta domain CH54_2347 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CH54_2348 PF07694 5TMR of 5TMR-LYT CH54_2348 PF06580 Histidine kinase CH54_2349 PF00005 ABC transporter CH54_2349 PF03412 Peptidase C39 family CH54_2349 PF00664 ABC transporter transmembrane region CH54_235 PF13419 Haloacid dehalogenase-like hydrolase CH54_2350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_2350 PF00529 HlyD membrane-fusion protein of T1SS CH54_2353 PF00535 Glycosyl transferase family 2 CH54_2356 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_2356 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_2357 PF01914 MarC family integral membrane protein CH54_2358 PF01202 Shikimate kinase CH54_2359 PF02447 GntP family permease CH54_236 PF14002 YniB-like protein CH54_2360 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_2360 PF00356 Bacterial regulatory proteins, lacI family CH54_2361 PF17954 Quercetinase C-terminal cupin domain CH54_2361 PF02678 Pirin CH54_2362 PF00583 Acetyltransferase (GNAT) family CH54_2363 PF01261 Xylose isomerase-like TIM barrel CH54_2364 PF01261 Xylose isomerase-like TIM barrel CH54_2365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_2365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH54_2366 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_2366 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_2366 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_2367 PF00294 pfkB family carbohydrate kinase CH54_2369 PF04962 KduI/IolB family CH54_2370 PF00171 Aldehyde dehydrogenase family CH54_2375 PF16970 Type-1 fimbrial protein, A CH54_2376 PF13953 PapC C-terminal domain CH54_2376 PF13954 PapC N-terminal domain CH54_2376 PF00577 Outer membrane usher protein CH54_2377 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_2377 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_238 PF00950 ABC 3 transport family CH54_2383 PF01384 Phosphate transporter family CH54_2384 PF10625 Universal stress protein B (UspB) CH54_2385 PF00582 Universal stress protein family CH54_2387 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH54_2387 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CH54_2388 PF08548 Peptidase M10 serralysin C terminal CH54_2388 PF00413 Matrixin CH54_2388 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CH54_2389 PF04445 Putative SAM-dependent methyltransferase CH54_239 PF00950 ABC 3 transport family CH54_2390 PF01432 Peptidase family M3 CH54_2391 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CH54_2392 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_2392 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_2394 PF03631 Virulence factor BrkB CH54_2395 PF02611 CDP-diacylglycerol pyrophosphatase CH54_2396 PF05170 AsmA family CH54_2397 PF00563 EAL domain CH54_2398 PF01361 Tautomerase enzyme CH54_2399 PF00294 pfkB family carbohydrate kinase CH54_240 PF00005 ABC transporter CH54_2400 PF00675 Insulinase (Peptidase family M16) CH54_2400 PF05193 Peptidase M16 inactive domain CH54_2401 PF00375 Sodium:dicarboxylate symporter family CH54_2402 PF06917 Periplasmic pectate lyase CH54_2403 PF06178 Oligogalacturonate-specific porin protein (KdgM) CH54_2404 PF17154 Gammaproteobacterial periplasmic sensor domain CH54_2404 PF00563 EAL domain CH54_2404 PF00672 HAMP domain CH54_2404 PF00990 Diguanylate cyclase, GGDEF domain CH54_2405 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CH54_2406 PF01270 Glycosyl hydrolases family 8 CH54_2407 PF03170 Bacterial cellulose synthase subunit CH54_2408 PF07238 PilZ domain CH54_2408 PF03552 Cellulose synthase CH54_2408 PF00535 Glycosyl transferase family 2 CH54_2409 PF06564 Cellulose biosynthesis protein BcsQ CH54_241 PF01297 Zinc-uptake complex component A periplasmic CH54_2411 PF10995 Cellulose biosynthesis GIL CH54_2412 PF11120 Cellulose biosynthesis protein BcsF CH54_2413 PF11658 Cellulose biosynthesis protein BcsG CH54_2414 PF00005 ABC transporter CH54_2414 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_2415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_2415 PF00005 ABC transporter CH54_2416 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_2416 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2417 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2418 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_2419 PF13332 Hemagglutinin repeat CH54_2419 PF04829 Pre-toxin domain with VENN motif CH54_2419 PF05860 haemagglutination activity domain CH54_2419 PF13018 Extended Signal Peptide of Type V secretion system CH54_242 PF01464 Transglycosylase SLT domain CH54_2420 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_2420 PF17287 POTRA domain CH54_2420 PF08479 POTRA domain, ShlB-type CH54_2421 PF03543 Yersinia/Haemophilus virulence surface antigen CH54_2421 PF13332 Hemagglutinin repeat CH54_2421 PF02661 Fic/DOC family CH54_2421 PF05860 haemagglutination activity domain CH54_2421 PF13018 Extended Signal Peptide of Type V secretion system CH54_2424 PF07690 Major Facilitator Superfamily CH54_2425 PF05231 MASE1 CH54_2425 PF07730 Histidine kinase CH54_2425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2426 PF00196 Bacterial regulatory proteins, luxR family CH54_2426 PF00072 Response regulator receiver domain CH54_2427 PF08019 Phosphoethanolamine transferase EptA/EptB CH54_2427 PF00884 Sulfatase CH54_2428 PF02566 OsmC-like protein CH54_2429 PF12146 Serine aminopeptidase, S33 CH54_243 PF01914 MarC family integral membrane protein CH54_2431 PF00324 Amino acid permease CH54_2432 PF00221 Aromatic amino acid lyase CH54_2433 PF17392 Urocanase C-terminal domain CH54_2433 PF17391 Urocanase N-terminal domain CH54_2433 PF01175 Urocanase Rossmann-like domain CH54_2437 PF00072 Response regulator receiver domain CH54_2438 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_2438 PF00072 Response regulator receiver domain CH54_2438 PF00989 PAS fold CH54_2438 PF01627 Hpt domain CH54_2438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2438 PF00512 His Kinase A (phospho-acceptor) domain CH54_2440 PF12833 Helix-turn-helix domain CH54_2441 PF02653 Branched-chain amino acid transport system / permease component CH54_2442 PF00005 ABC transporter CH54_2443 PF13407 Periplasmic binding protein domain CH54_2445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_2445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_2446 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_2446 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_2447 PF00857 Isochorismatase family CH54_2448 PF01757 Acyltransferase family CH54_2449 PF01965 DJ-1/PfpI family CH54_2449 PF12833 Helix-turn-helix domain CH54_2450 PF07804 HipA-like C-terminal domain CH54_2450 PF13657 HipA N-terminal domain CH54_2451 PF07690 Major Facilitator Superfamily CH54_2454 PF03144 Elongation factor Tu domain 2 CH54_2454 PF00009 Elongation factor Tu GTP binding domain CH54_2454 PF09107 Elongation factor SelB, winged helix CH54_2454 PF09106 Elongation factor SelB, winged helix CH54_2455 PF12390 Selenocysteine synthase N terminal CH54_2455 PF03841 L-seryl-tRNA selenium transferase CH54_2456 PF04216 Protein involved in formate dehydrogenase formation CH54_2457 PF01292 Prokaryotic cytochrome b561 CH54_2458 PF09163 Formate dehydrogenase N, transmembrane CH54_2458 PF13247 4Fe-4S dicluster domain CH54_2459 PF00384 Molybdopterin oxidoreductase CH54_2459 PF01568 Molydopterin dinucleotide binding domain CH54_2459 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_2460 PF01568 Molydopterin dinucleotide binding domain CH54_2460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_2460 PF00384 Molybdopterin oxidoreductase CH54_2461 PF02634 FdhD/NarQ family CH54_2462 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH54_2462 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH54_2463 PF02203 Tar ligand binding domain homologue CH54_2463 PF00672 HAMP domain CH54_2463 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_2464 PF10928 Protein of unknown function (DUF2810) CH54_2465 PF00155 Aminotransferase class I and II CH54_2465 PF00392 Bacterial regulatory proteins, gntR family CH54_2466 PF05068 Mannitol repressor CH54_2468 PF01232 Mannitol dehydrogenase Rossmann domain CH54_2468 PF08125 Mannitol dehydrogenase C-terminal domain CH54_2469 PF02378 Phosphotransferase system, EIIC CH54_2469 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_2469 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_2470 PF11254 Protein of unknown function (DUF3053) CH54_2471 PF02092 Glycyl-tRNA synthetase beta subunit CH54_2471 PF05746 DALR anticodon binding domain CH54_2472 PF02091 Glycyl-tRNA synthetase alpha subunit CH54_2475 PF03352 Methyladenine glycosylase CH54_2476 PF00583 Acetyltransferase (GNAT) family CH54_248 PF04474 Protein of unknown function (DUF554) CH54_2480 PF07690 Major Facilitator Superfamily CH54_2481 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_2481 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_2482 PF00128 Alpha amylase, catalytic domain CH54_2483 PF00155 Aminotransferase class I and II CH54_2484 PF02080 TrkA-C domain CH54_2484 PF06826 Predicted Permease Membrane Region CH54_2485 PF00011 Hsp20/alpha crystallin family CH54_2486 PF00011 Hsp20/alpha crystallin family CH54_2487 PF07119 Protein of unknown function (DUF1375) CH54_2488 PF12566 Protein of unknown function (DUF3748) CH54_2488 PF07676 WD40-like Beta Propeller Repeat CH54_2489 PF13309 HTH domain CH54_2489 PF08348 YheO-like PAS domain CH54_249 PF00872 Transposase, Mutator family CH54_2490 PF00291 Pyridoxal-phosphate dependent enzyme CH54_2491 PF02423 Ornithine cyclodeaminase/mu-crystallin family CH54_2493 PF00204 DNA gyrase B CH54_2493 PF01751 Toprim domain CH54_2493 PF00986 DNA gyrase B subunit, carboxyl terminus CH54_2493 PF18053 DNA gyrase B subunit insert domain CH54_2493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2494 PF02463 RecF/RecN/SMC N terminal domain CH54_2495 PF02768 DNA polymerase III beta subunit, C-terminal domain CH54_2495 PF00712 DNA polymerase III beta subunit, N-terminal domain CH54_2495 PF02767 DNA polymerase III beta subunit, central domain CH54_2496 PF08299 Bacterial dnaA protein helix-turn-helix CH54_2496 PF00308 Bacterial dnaA protein CH54_2496 PF11638 DnaA N-terminal domain CH54_2497 PF00468 Ribosomal protein L34 CH54_2498 PF00825 Ribonuclease P CH54_2499 PF01809 Putative membrane protein insertion efficiency factor CH54_25 PF00708 Acylphosphatase CH54_250 PF03797 Autotransporter beta-domain CH54_2500 PF02096 60Kd inner membrane protein CH54_2500 PF14849 YidC periplasmic domain CH54_2501 PF12631 MnmE helical domain CH54_2501 PF01926 50S ribosome-binding GTPase CH54_2501 PF10396 GTP-binding protein TrmE N-terminus CH54_2502 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CH54_2502 PF12241 Trans-2-enoyl-CoA reductase catalytic region CH54_2502 PF07055 Enoyl reductase FAD binding domain CH54_2504 PF09383 NIL domain CH54_2504 PF00005 ABC transporter CH54_2505 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2506 PF00672 HAMP domain CH54_2506 PF02203 Tar ligand binding domain homologue CH54_2506 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_2507 PF03358 NADPH-dependent FMN reductase CH54_2508 PF00512 His Kinase A (phospho-acceptor) domain CH54_2508 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2508 PF00989 PAS fold CH54_2509 PF00072 Response regulator receiver domain CH54_2509 PF00196 Bacterial regulatory proteins, luxR family CH54_2511 PF00860 Permease family CH54_2512 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2513 PF13419 Haloacid dehalogenase-like hydrolase CH54_2514 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2515 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_2517 PF01895 PhoU domain CH54_2518 PF00005 ABC transporter CH54_2519 PF00528 Binding-protein-dependent transport system inner membrane component CH54_252 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_252 PF02824 TGS domain CH54_252 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_252 PF03129 Anticodon binding domain CH54_2520 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2521 PF12849 PBP superfamily domain CH54_2522 PF01740 STAS domain CH54_2522 PF00916 Sulfate permease family CH54_2523 PF01380 SIS domain CH54_2524 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_2524 PF12804 MobA-like NTP transferase domain CH54_2525 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CH54_2525 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CH54_2526 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH54_2526 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_2527 PF00231 ATP synthase CH54_2528 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_2528 PF00306 ATP synthase alpha/beta chain, C terminal domain CH54_2528 PF02874 ATP synthase alpha/beta family, beta-barrel domain CH54_2529 PF00213 ATP synthase delta (OSCP) subunit CH54_253 PF05198 Translation initiation factor IF-3, N-terminal domain CH54_253 PF00707 Translation initiation factor IF-3, C-terminal domain CH54_2530 PF00430 ATP synthase B/B' CF(0) CH54_2531 PF00137 ATP synthase subunit C CH54_2532 PF00119 ATP synthase A chain CH54_2533 PF03899 ATP synthase I chain CH54_2534 PF02527 rRNA small subunit methyltransferase G CH54_2535 PF01134 Glucose inhibited division protein A CH54_2535 PF13932 GidA associated domain CH54_2536 PF00258 Flavodoxin CH54_2537 PF01037 Lrp/AsnC ligand binding domain CH54_2538 PF03590 Aspartate-ammonia ligase CH54_254 PF01632 Ribosomal protein L35 CH54_2540 PF05762 VWA domain containing CoxE-like protein CH54_2541 PF07728 AAA domain (dynein-related subfamily) CH54_2541 PF17868 AAA lid domain CH54_2541 PF12592 Protein of unknown function (DUF3763) CH54_2542 PF02705 K+ potassium transporter CH54_2543 PF05025 RbsD / FucU transport protein family CH54_2544 PF00005 ABC transporter CH54_2545 PF02653 Branched-chain amino acid transport system / permease component CH54_2546 PF13407 Periplasmic binding protein domain CH54_2547 PF00294 pfkB family carbohydrate kinase CH54_2548 PF07690 Major Facilitator Superfamily CH54_2549 PF00356 Bacterial regulatory proteins, lacI family CH54_255 PF00453 Ribosomal protein L20 CH54_2550 PF00392 Bacterial regulatory proteins, gntR family CH54_2550 PF07729 FCD domain CH54_2555 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CH54_2556 PF12804 MobA-like NTP transferase domain CH54_2557 PF06288 Protein of unknown function (DUF1040) CH54_2558 PF01636 Phosphotransferase enzyme family CH54_2559 PF01323 DSBA-like thioredoxin domain CH54_256 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CH54_256 PF01409 tRNA synthetases class II core domain (F) CH54_2560 PF01612 3'-5' exonuclease CH54_2560 PF01367 5'-3' exonuclease, C-terminal SAM fold CH54_2560 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH54_2560 PF00476 DNA polymerase family A CH54_2561 PF01926 50S ribosome-binding GTPase CH54_2562 PF04220 Der GTPase activator (YihI) CH54_2563 PF06969 HemN C-terminal domain CH54_2563 PF04055 Radical SAM superfamily CH54_2564 PF00158 Sigma-54 interaction domain CH54_2564 PF02954 Bacterial regulatory protein, Fis family CH54_2564 PF00072 Response regulator receiver domain CH54_2565 PF00989 PAS fold CH54_2565 PF00512 His Kinase A (phospho-acceptor) domain CH54_2565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2566 PF00120 Glutamine synthetase, catalytic domain CH54_2566 PF03951 Glutamine synthetase, beta-Grasp domain CH54_2568 PF13419 Haloacid dehalogenase-like hydrolase CH54_2569 PF03631 Virulence factor BrkB CH54_257 PF03147 Ferredoxin-fold anticodon binding domain CH54_257 PF01588 Putative tRNA binding domain CH54_257 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CH54_257 PF03483 B3/4 domain CH54_257 PF03484 tRNA synthetase B5 domain CH54_2570 PF02580 D-Tyr-tRNA(Tyr) deacylase CH54_2571 PF00583 Acetyltransferase (GNAT) family CH54_2571 PF09500 Putative thioesterase (yiiD_Cterm) CH54_2572 PF13693 Winged helix-turn-helix DNA-binding CH54_2573 PF00196 Bacterial regulatory proteins, luxR family CH54_2573 PF00072 Response regulator receiver domain CH54_2575 PF05170 AsmA family CH54_2576 PF00860 Permease family CH54_2577 PF03616 Sodium/glutamate symporter CH54_2578 PF17191 RecG wedge domain CH54_2578 PF00271 Helicase conserved C-terminal domain CH54_2578 PF00270 DEAD/DEAH box helicase CH54_2579 PF12105 SpoU, rRNA methylase, C-terminal CH54_2579 PF00588 SpoU rRNA Methylase family CH54_258 PF00216 Bacterial DNA-binding protein CH54_2580 PF13291 ACT domain CH54_2580 PF04607 Region found in RelA / SpoT proteins CH54_2580 PF02824 TGS domain CH54_2581 PF01192 RNA polymerase Rpb6 CH54_2582 PF00625 Guanylate kinase CH54_2583 PF03120 NAD-dependent DNA ligase OB-fold domain CH54_2583 PF01653 NAD-dependent DNA ligase adenylation domain CH54_2584 PF03458 UPF0126 domain CH54_2587 PF00378 Enoyl-CoA hydratase/isomerase CH54_2588 PF00563 EAL domain CH54_2588 PF00990 Diguanylate cyclase, GGDEF domain CH54_2588 PF13426 PAS domain CH54_259 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CH54_2594 PF03755 YicC-like family, N-terminal region CH54_2594 PF08340 Domain of unknown function (DUF1732) CH54_2595 PF03725 3' exoribonuclease family, domain 2 CH54_2595 PF01138 3' exoribonuclease family, domain 1 CH54_2597 PF04606 Ogr/Delta-like zinc finger CH54_26 PF04358 DsrC like protein CH54_2603 PF17482 Phage tail sheath C-terminal domain CH54_2603 PF04984 Phage tail sheath protein subtilisin-like domain CH54_261 PF01032 FecCD transport family CH54_262 PF00255 Glutathione peroxidase CH54_2626 PF05840 Bacteriophage replication gene A protein (GPA) CH54_2629 PF02086 D12 class N6 adenine-specific DNA methyltransferase CH54_263 PF00005 ABC transporter CH54_2630 PF00929 Exonuclease CH54_264 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH54_2640 PF02899 Phage integrase, N-terminal SAM-like domain CH54_2640 PF00589 Phage integrase family CH54_2641 PF00156 Phosphoribosyl transferase domain CH54_2642 PF00440 Bacterial regulatory proteins, tetR family CH54_2643 PF00692 dUTPase CH54_2644 PF04127 DNA / pantothenate metabolism flavoprotein CH54_2644 PF02441 Flavoprotein CH54_2645 PF04002 RadC-like JAB domain CH54_2646 PF00830 Ribosomal L28 family CH54_2647 PF00471 Ribosomal protein L33 CH54_2648 PF06827 Zinc finger found in FPG and IleRS CH54_2648 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CH54_2648 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CH54_2649 PF01467 Cytidylyltransferase-like CH54_265 PF00535 Glycosyl transferase family 2 CH54_2650 PF00535 Glycosyl transferase family 2 CH54_2651 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CH54_2652 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_2653 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CH54_2654 PF01370 NAD dependent epimerase/dehydratase family CH54_2655 PF00155 Aminotransferase class I and II CH54_2656 PF00107 Zinc-binding dehydrogenase CH54_2656 PF08240 Alcohol dehydrogenase GroES-like domain CH54_2657 PF04748 Divergent polysaccharide deacetylase CH54_2658 PF01551 Peptidase family M23 CH54_2659 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CH54_2659 PF01676 Metalloenzyme superfamily CH54_266 PF00551 Formyl transferase CH54_266 PF01370 NAD dependent epimerase/dehydratase family CH54_266 PF02911 Formyl transferase, C-terminal domain CH54_2660 PF00581 Rhodanese-like domain CH54_2661 PF00462 Glutaredoxin CH54_2662 PF02556 Preprotein translocase subunit SecB CH54_2663 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CH54_2663 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CH54_2664 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_2664 PF06426 Serine acetyltransferase, N-terminal CH54_2665 PF00588 SpoU rRNA Methylase family CH54_2666 PF12833 Helix-turn-helix domain CH54_2666 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH54_2666 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_2666 PF02805 Metal binding domain of Ada CH54_2667 PF16527 Two-component sensor protein CpxA, periplasmic domain CH54_2667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_2667 PF00512 His Kinase A (phospho-acceptor) domain CH54_2667 PF00672 HAMP domain CH54_2668 PF00072 Response regulator receiver domain CH54_2668 PF00486 Transcriptional regulatory protein, C terminal CH54_2669 PF07813 LTXXQ motif family protein CH54_267 PF01522 Polysaccharide deacetylase CH54_2670 PF01545 Cation efflux family CH54_2670 PF16916 Dimerisation domain of Zinc Transporter CH54_2671 PF00365 Phosphofructokinase CH54_2674 PF00121 Triosephosphate isomerase CH54_2675 PF07305 Protein of unknown function (DUF1454) CH54_2676 PF05656 Protein of unknown function (DUF805) CH54_2677 PF00175 Oxidoreductase NAD-binding domain CH54_2677 PF00970 Oxidoreductase FAD-binding domain CH54_2678 PF07690 Major Facilitator Superfamily CH54_2679 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CH54_268 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CH54_2680 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CH54_2680 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_2681 PF00230 Major intrinsic protein CH54_2682 PF06005 Cell division protein ZapB CH54_2683 PF03737 Aldolase/RraA CH54_2684 PF01040 UbiA prenyltransferase family CH54_2685 PF00004 ATPase family associated with various cellular activities (AAA) CH54_2685 PF07724 AAA domain (Cdc48 subfamily) CH54_2685 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_2686 PF00227 Proteasome subunit CH54_2687 PF05036 Sporulation related domain CH54_2688 PF00356 Bacterial regulatory proteins, lacI family CH54_2689 PF00271 Helicase conserved C-terminal domain CH54_2689 PF17764 3′ DNA-binding domain (3′BD) CH54_2689 PF00270 DEAD/DEAH box helicase CH54_2689 PF18074 Primosomal protein N C-terminal domain CH54_2689 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CH54_269 PF00892 EamA-like transporter family CH54_2690 PF01197 Ribosomal protein L31 CH54_2691 PF01340 Met Apo-repressor, MetJ CH54_2692 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_2693 PF03447 Homoserine dehydrogenase, NAD binding domain CH54_2693 PF00742 Homoserine dehydrogenase CH54_2693 PF00696 Amino acid kinase family CH54_2694 PF02219 Methylenetetrahydrofolate reductase CH54_2695 PF00311 Phosphoenolpyruvate carboxylase CH54_2696 PF07687 Peptidase dimerisation domain CH54_2696 PF01546 Peptidase family M20/M25/M40 CH54_2697 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_2697 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_2698 PF00696 Amino acid kinase family CH54_2699 PF14698 Argininosuccinate lyase C-terminal CH54_2699 PF00206 Lyase CH54_2700 PF00593 TonB dependent receptor CH54_2700 PF07715 TonB-dependent Receptor Plug Domain CH54_2705 PF00664 ABC transporter transmembrane region CH54_2705 PF00005 ABC transporter CH54_2706 PF00529 HlyD membrane-fusion protein of T1SS CH54_2708 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_2708 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_2709 PF00462 Glutaredoxin CH54_2709 PF08534 Redoxin CH54_271 PF00877 NlpC/P60 family CH54_2710 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_2710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CH54_2711 PF03466 LysR substrate binding domain CH54_2711 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2712 PF00440 Bacterial regulatory proteins, tetR family CH54_2713 PF07226 Protein of unknown function (DUF1422) CH54_2714 PF05958 tRNA (Uracil-5-)-methyltransferase CH54_2715 PF00593 TonB dependent receptor CH54_2715 PF07715 TonB-dependent Receptor Plug Domain CH54_2716 PF01177 Asp/Glu/Hydantoin racemase CH54_272 PF10437 Bacterial lipoate protein ligase C-terminus CH54_272 PF03099 Biotin/lipoate A/B protein ligase family CH54_2724 PF03466 LysR substrate binding domain CH54_2724 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2725 PF04219 Protein of unknown function, DUF CH54_2726 PF13335 Magnesium chelatase, subunit ChlI C-terminal CH54_2726 PF01078 Magnesium chelatase, subunit ChlI CH54_2727 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_2727 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_2727 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_2729 PF01063 Amino-transferase class IV CH54_273 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CH54_2730 PF00920 Dehydratase family CH54_2731 PF00291 Pyridoxal-phosphate dependent enzyme CH54_2731 PF00585 C-terminal regulatory domain of Threonine dehydratase CH54_2732 PF03466 LysR substrate binding domain CH54_2732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2733 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CH54_2733 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CH54_2734 PF06958 S-type Pyocin CH54_2735 PF01320 Colicin immunity protein / pyocin immunity protein CH54_2736 PF01320 Colicin immunity protein / pyocin immunity protein CH54_2737 PF01320 Colicin immunity protein / pyocin immunity protein CH54_2739 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_2739 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_274 PF01497 Periplasmic binding protein CH54_2741 PF13953 PapC C-terminal domain CH54_2741 PF13954 PapC N-terminal domain CH54_2741 PF00577 Outer membrane usher protein CH54_2742 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_2742 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_2745 PF00580 UvrD/REP helicase N-terminal domain CH54_2745 PF13361 UvrD-like helicase C-terminal domain CH54_2746 PF02541 Ppx/GppA phosphatase family CH54_2747 PF00271 Helicase conserved C-terminal domain CH54_2747 PF00270 DEAD/DEAH box helicase CH54_2748 PF00085 Thioredoxin CH54_2749 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_2749 PF07498 Rho termination factor, N-terminal domain CH54_2749 PF07497 Rho termination factor, RNA-binding domain CH54_275 PF05171 Haemin-degrading HemS.ChuX domain CH54_2750 PF00953 Glycosyl transferase family 4 CH54_2751 PF02706 Chain length determinant protein CH54_2752 PF02350 UDP-N-acetylglucosamine 2-epimerase CH54_2753 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH54_2753 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH54_2753 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH54_2754 PF16363 GDP-mannose 4,6 dehydratase CH54_2755 PF00483 Nucleotidyl transferase CH54_2757 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CH54_2758 PF01943 Polysaccharide biosynthesis protein CH54_2759 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CH54_276 PF00593 TonB dependent receptor CH54_276 PF07715 TonB-dependent Receptor Plug Domain CH54_2760 PF06899 WzyE protein, O-antigen assembly polymerase CH54_2761 PF03808 Glycosyl transferase WecB/TagA/CpsF family CH54_2762 PF00324 Amino acid permease CH54_2769 PF07719 Tetratricopeptide repeat CH54_2769 PF07219 HemY protein N-terminus CH54_277 PF00793 DAHP synthetase I family CH54_2770 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CH54_2771 PF02602 Uroporphyrinogen-III synthase HemD CH54_2772 PF03900 Porphobilinogen deaminase, C-terminal domain CH54_2772 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CH54_2773 PF12633 Adenylate cyclase NT domain CH54_2773 PF01295 Adenylate cyclase, class-I CH54_2774 PF01491 Frataxin-like domain CH54_2775 PF13627 Prokaryotic lipoprotein-attachment site CH54_2776 PF01678 Diaminopimelate epimerase CH54_2777 PF04340 Protein of unknown function, DUF484 CH54_2778 PF02899 Phage integrase, N-terminal SAM-like domain CH54_2778 PF00589 Phage integrase family CH54_2779 PF13419 Haloacid dehalogenase-like hydrolase CH54_278 PF03618 Kinase/pyrophosphorylase CH54_2780 PF13361 UvrD-like helicase C-terminal domain CH54_2780 PF00580 UvrD/REP helicase N-terminal domain CH54_2783 PF09370 Phosphoenolpyruvate hydrolase-like CH54_2785 PF01544 CorA-like Mg2+ transporter protein CH54_2786 PF00892 EamA-like transporter family CH54_2787 PF03061 Thioesterase superfamily CH54_2788 PF02253 Phospholipase A1 CH54_2789 PF16124 RecQ zinc-binding CH54_2789 PF00570 HRDC domain CH54_2789 PF00271 Helicase conserved C-terminal domain CH54_2789 PF00270 DEAD/DEAH box helicase CH54_2789 PF09382 RQC domain CH54_279 PF00391 PEP-utilising enzyme, mobile domain CH54_279 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_279 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CH54_2790 PF01810 LysE type translocator CH54_2791 PF01810 LysE type translocator CH54_2792 PF12146 Serine aminopeptidase, S33 CH54_2794 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_2795 PF07690 Major Facilitator Superfamily CH54_2796 PF04324 BFD-like [2Fe-2S] binding domain CH54_2796 PF01266 FAD dependent oxidoreductase CH54_2797 PF00890 FAD binding domain CH54_2798 PF13183 4Fe-4S dicluster domain CH54_2798 PF02754 Cysteine-rich domain CH54_2799 PF08786 DcrB CH54_28 PF01867 CRISPR associated protein Cas1 CH54_280 PF01594 AI-2E family transporter CH54_2800 PF02592 Putative vitamin uptake transporter CH54_2801 PF01206 Sulfurtransferase TusA CH54_2802 PF00403 Heavy-metal-associated domain CH54_2803 PF07947 YhhN family CH54_2806 PF06611 Protein of unknown function (DUF1145) CH54_2808 PF02881 SRP54-type protein, helical bundle domain CH54_2808 PF00448 SRP54-type protein, GTPase domain CH54_2809 PF00005 ABC transporter CH54_281 PF13183 4Fe-4S dicluster domain CH54_281 PF01565 FAD binding domain CH54_281 PF02913 FAD linked oxidases, C-terminal domain CH54_2810 PF02687 FtsX-like permease family CH54_2810 PF18075 FtsX extracellular domain CH54_2811 PF04545 Sigma-70, region 4 CH54_2811 PF04542 Sigma-70 region 2 CH54_2811 PF00140 Sigma-70 factor, region 1.2 CH54_2813 PF12568 Acetyltransferase (GNAT) domain, PanZ CH54_2814 PF13458 Periplasmic binding protein CH54_2815 PF02653 Branched-chain amino acid transport system / permease component CH54_2816 PF02653 Branched-chain amino acid transport system / permease component CH54_2816 PF11862 Domain of unknown function (DUF3382) CH54_2817 PF00005 ABC transporter CH54_2817 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH54_2818 PF00005 ABC transporter CH54_282 PF03061 Thioesterase superfamily CH54_2825 PF13416 Bacterial extracellular solute-binding protein CH54_2826 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2827 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2828 PF17912 MalK OB fold domain CH54_2828 PF00005 ABC transporter CH54_2829 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_283 PF01521 Iron-sulphur cluster biosynthesis CH54_2830 PF03547 Membrane transport protein CH54_2831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2831 PF03466 LysR substrate binding domain CH54_2832 PF00892 EamA-like transporter family CH54_2833 PF01717 Cobalamin-independent synthase, Catalytic domain CH54_2833 PF08267 Cobalamin-independent synthase, N-terminal domain CH54_2834 PF01738 Dienelactone hydrolase family CH54_2835 PF01048 Phosphorylase superfamily CH54_2837 PF13722 5TM C-terminal transporter carbon starvation CstA CH54_2837 PF02554 Carbon starvation protein CstA CH54_2838 PF09335 SNARE associated Golgi protein CH54_2839 PF02646 RmuC family CH54_284 PF01458 Uncharacterized protein family (UPF0051) CH54_2840 PF01209 ubiE/COQ5 methyltransferase family CH54_2841 PF02036 SCP-2 sterol transfer family CH54_2842 PF03109 ABC1 family CH54_2843 PF02416 mttA/Hcf106 family CH54_2845 PF00902 Sec-independent protein translocase protein (TatC) CH54_2846 PF01026 TatD related DNase CH54_2847 PF00490 Delta-aminolevulinic acid dehydratase CH54_2848 PF02357 Transcription termination factor nusG CH54_2849 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CH54_285 PF00005 ABC transporter CH54_2850 PF00175 Oxidoreductase NAD-binding domain CH54_2850 PF00970 Oxidoreductase FAD-binding domain CH54_2851 PF02803 Thiolase, C-terminal domain CH54_2851 PF00108 Thiolase, N-terminal domain CH54_2852 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH54_2852 PF00378 Enoyl-CoA hydratase/isomerase CH54_2852 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH54_2854 PF00557 Metallopeptidase family M24 CH54_2855 PF01205 Uncharacterized protein family UPF0029 CH54_2855 PF09186 Domain of unknown function (DUF1949) CH54_2856 PF02386 Cation transport protein CH54_2857 PF12724 Flavodoxin domain CH54_286 PF01458 Uncharacterized protein family (UPF0051) CH54_2862 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CH54_2862 PF01565 FAD binding domain CH54_2863 PF08279 HTH domain CH54_2863 PF03099 Biotin/lipoate A/B protein ligase family CH54_2863 PF02237 Biotin protein ligase C terminal domain CH54_2864 PF00485 Phosphoribulokinase / Uridine kinase family CH54_2865 PF13673 Acetyltransferase (GNAT) domain CH54_287 PF00266 Aminotransferase class-V CH54_2873 PF00009 Elongation factor Tu GTP binding domain CH54_2873 PF03144 Elongation factor Tu domain 2 CH54_2873 PF03143 Elongation factor Tu C-terminal domain CH54_2874 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CH54_2875 PF00467 KOW motif CH54_2875 PF02357 Transcription termination factor nusG CH54_2876 PF00298 Ribosomal protein L11, RNA binding domain CH54_2876 PF03946 Ribosomal protein L11, N-terminal domain CH54_2877 PF00687 Ribosomal protein L1p/L10e family CH54_2878 PF00466 Ribosomal protein L10 CH54_2879 PF00542 Ribosomal protein L7/L12 C-terminal domain CH54_2879 PF16320 Ribosomal protein L7/L12 dimerisation domain CH54_288 PF02657 Fe-S metabolism associated domain CH54_2880 PF04560 RNA polymerase Rpb2, domain 7 CH54_2880 PF04563 RNA polymerase beta subunit CH54_2880 PF04565 RNA polymerase Rpb2, domain 3 CH54_2880 PF04561 RNA polymerase Rpb2, domain 2 CH54_2880 PF10385 RNA polymerase beta subunit external 1 domain CH54_2880 PF00562 RNA polymerase Rpb2, domain 6 CH54_2881 PF04983 RNA polymerase Rpb1, domain 3 CH54_2881 PF04997 RNA polymerase Rpb1, domain 1 CH54_2881 PF00623 RNA polymerase Rpb1, domain 2 CH54_2881 PF04998 RNA polymerase Rpb1, domain 5 CH54_2881 PF05000 RNA polymerase Rpb1, domain 4 CH54_2882 PF06968 Biotin and Thiamin Synthesis associated domain CH54_2882 PF04055 Radical SAM superfamily CH54_2883 PF05690 Thiazole biosynthesis protein ThiG CH54_2884 PF02597 ThiS family CH54_2885 PF00899 ThiF family CH54_2886 PF02581 Thiamine monophosphate synthase CH54_2887 PF13667 ThiC-associated domain CH54_2887 PF01964 Radical SAM ThiC family CH54_2888 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CH54_2889 PF00293 NUDIX domain CH54_2889 PF09297 NADH pyrophosphatase zinc ribbon domain CH54_289 PF03734 L,D-transpeptidase catalytic domain CH54_289 PF01476 LysM domain CH54_289 PF17969 L,D-transpeptidase C-terminal domain CH54_2890 PF01208 Uroporphyrinogen decarboxylase (URO-D) CH54_2891 PF04493 Endonuclease V CH54_2892 PF04222 Protein of unknown function (DUF416) CH54_2893 PF00216 Bacterial DNA-binding protein CH54_2894 PF07356 Protein of unknown function (DUF1481) CH54_2895 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CH54_2895 PF02843 Phosphoribosylglycinamide synthetase, C domain CH54_2895 PF02844 Phosphoribosylglycinamide synthetase, N domain CH54_2896 PF02142 MGS-like domain CH54_2896 PF01808 AICARFT/IMPCHase bienzyme CH54_290 PF04728 Lipoprotein leucine-zipper CH54_2904 PF04204 Homoserine O-succinyltransferase CH54_2905 PF01274 Malate synthase CH54_2906 PF00463 Isocitrate lyase family CH54_2907 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CH54_2908 PF09339 IclR helix-turn-helix domain CH54_2908 PF01614 Bacterial transcriptional regulator CH54_2909 PF02310 B12 binding domain CH54_2909 PF02607 B12 binding domain CH54_2909 PF02965 Vitamin B12 dependent methionine synthase, activation domain CH54_2909 PF00809 Pterin binding enzyme CH54_2909 PF02574 Homocysteine S-methyltransferase CH54_291 PF00224 Pyruvate kinase, barrel domain CH54_291 PF02887 Pyruvate kinase, alpha/beta domain CH54_2910 PF13332 Hemagglutinin repeat CH54_2910 PF05860 haemagglutination activity domain CH54_2911 PF08479 POTRA domain, ShlB-type CH54_2911 PF17287 POTRA domain CH54_2911 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CH54_2912 PF01758 Sodium Bile acid symporter family CH54_2913 PF01842 ACT domain CH54_2913 PF00696 Amino acid kinase family CH54_2915 PF00342 Phosphoglucose isomerase CH54_2916 PF06146 Phosphate-starvation-inducible E CH54_2917 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2918 PF00528 Binding-protein-dependent transport system inner membrane component CH54_2918 PF14785 Maltose transport system permease protein MalF P2 domain CH54_2919 PF01547 Bacterial extracellular solute-binding protein CH54_2920 PF17912 MalK OB fold domain CH54_2920 PF00005 ABC transporter CH54_2921 PF02264 LamB porin CH54_2922 PF07148 Maltose operon periplasmic protein precursor (MalM) CH54_2924 PF04345 Chorismate lyase CH54_2925 PF01040 UbiA prenyltransferase family CH54_2926 PF01553 Acyltransferase CH54_2927 PF01219 Prokaryotic diacylglycerol kinase CH54_2928 PF00717 Peptidase S24-like CH54_2928 PF01726 LexA DNA binding domain CH54_2929 PF05532 CsbD-like CH54_2930 PF01475 Ferric uptake regulator family CH54_2931 PF01207 Dihydrouridine synthase (Dus) CH54_2932 PF09583 Phage shock protein G (Phageshock_PspG) CH54_2934 PF00107 Zinc-binding dehydrogenase CH54_2934 PF08240 Alcohol dehydrogenase GroES-like domain CH54_2935 PF00772 DnaB-like helicase N terminal domain CH54_2935 PF03796 DnaB-like helicase C terminal domain CH54_2936 PF01168 Alanine racemase, N-terminal domain CH54_2936 PF00842 Alanine racemase, C-terminal domain CH54_2937 PF00155 Aminotransferase class I and II CH54_2938 PF04237 YjbR CH54_2939 PF17755 UvrA DNA-binding domain CH54_2939 PF17760 UvrA interaction domain CH54_2939 PF00005 ABC transporter CH54_2940 PF00436 Single-strand binding protein family CH54_2945 PF00860 Permease family CH54_2946 PF00999 Sodium/hydrogen exchanger family CH54_2947 PF03466 LysR substrate binding domain CH54_2947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2948 PF03788 LrgA family CH54_295 PF01554 MatE CH54_2951 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_2952 PF00939 Sodium:sulfate symporter transmembrane region CH54_2954 PF00313 'Cold-shock' DNA-binding domain CH54_2955 PF00313 'Cold-shock' DNA-binding domain CH54_2956 PF05433 Glycine zipper 2TM domain CH54_2957 PF08448 PAS fold CH54_2957 PF00990 Diguanylate cyclase, GGDEF domain CH54_2958 PF02954 Bacterial regulatory protein, Fis family CH54_2959 PF01207 Dihydrouridine synthase (Dus) CH54_296 PF00677 Lumazine binding domain CH54_2961 PF00474 Sodium:solute symporter family CH54_2962 PF06196 Protein of unknown function (DUF997) CH54_2963 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CH54_2963 PF02785 Biotin carboxylase C-terminal domain CH54_2963 PF00289 Biotin carboxylase, N-terminal domain CH54_2964 PF00364 Biotin-requiring enzyme CH54_2965 PF01220 Dehydroquinase class II CH54_2966 PF01794 Ferric reductase like transmembrane component CH54_2967 PF00174 Oxidoreductase molybdopterin binding domain CH54_2968 PF00107 Zinc-binding dehydrogenase CH54_2968 PF08240 Alcohol dehydrogenase GroES-like domain CH54_2969 PF17157 Gammaproteobacterial periplasmic sensor domain CH54_2969 PF00563 EAL domain CH54_2969 PF00990 Diguanylate cyclase, GGDEF domain CH54_2971 PF04085 rod shape-determining protein MreC CH54_2972 PF04093 rod shape-determining protein MreD CH54_2973 PF02545 Maf-like protein CH54_2974 PF00575 S1 RNA binding domain CH54_2974 PF10150 Ribonuclease E/G family CH54_2975 PF13116 Protein of unknown function CH54_2975 PF13502 AsmA-like C-terminal region CH54_2976 PF00795 Carbon-nitrogen hydrolase CH54_2977 PF01523 Putative modulator of DNA gyrase CH54_2978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_2978 PF03466 LysR substrate binding domain CH54_2979 PF07869 Protein of unknown function (DUF1656) CH54_298 PF07690 Major Facilitator Superfamily CH54_2980 PF13533 Biotin-lipoyl like CH54_2981 PF04632 Fusaric acid resistance protein family CH54_2982 PF00171 Aldehyde dehydrogenase family CH54_2984 PF01337 Barstar (barnase inhibitor) CH54_2985 PF04751 Protein of unknown function (DUF615) CH54_2986 PF01523 Putative modulator of DNA gyrase CH54_2987 PF07361 Cytochrome b562 CH54_2988 PF14760 Rnk N-terminus CH54_2988 PF01272 Transcription elongation factor, GreA/GreB, C-term CH54_299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_299 PF03466 LysR substrate binding domain CH54_2994 PF01979 Amidohydrolase family CH54_2995 PF03841 L-seryl-tRNA selenium transferase CH54_2996 PF07071 KDGP aldolase CH54_2997 PF10282 Lactonase, 7-bladed beta-propeller CH54_2998 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_2998 PF00874 PRD domain CH54_2998 PF05043 Mga helix-turn-helix domain CH54_2998 PF08279 HTH domain CH54_2999 PF00689 Cation transporting ATPase, C-terminus CH54_2999 PF00690 Cation transporter/ATPase, N-terminus CH54_3 PF04403 Paraquat-inducible protein A CH54_300 PF00356 Bacterial regulatory proteins, lacI family CH54_3000 PF00356 Bacterial regulatory proteins, lacI family CH54_3001 PF02378 Phosphotransferase system, EIIC CH54_3001 PF00367 phosphotransferase system, EIIB CH54_3002 PF11941 Domain of unknown function (DUF3459) CH54_3002 PF00128 Alpha amylase, catalytic domain CH54_3003 PF01042 Endoribonuclease L-PSP CH54_3004 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CH54_3004 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CH54_3005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CH54_3005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CH54_3007 PF00381 PTS HPr component phosphorylation site CH54_3008 PF03668 P-loop ATPase protein family CH54_3009 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_3010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CH54_3011 PF00309 Sigma-54 factor, Activator interacting domain (AID) CH54_3011 PF04552 Sigma-54, DNA binding domain CH54_3011 PF04963 Sigma-54 factor, core binding domain CH54_3012 PF12399 Branched-chain amino acid ATP-binding cassette transporter CH54_3012 PF00005 ABC transporter CH54_3013 PF03968 OstA-like protein CH54_3014 PF06835 Lipopolysaccharide-assembly, LptC-related CH54_3016 PF00571 CBS domain CH54_3016 PF01380 SIS domain CH54_3017 PF01699 Sodium/calcium exchanger protein CH54_3018 PF00005 ABC transporter CH54_3019 PF02405 Permease MlaE CH54_302 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CH54_302 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CH54_3020 PF02470 MlaD protein CH54_3021 PF05494 MlaC protein CH54_3022 PF13466 STAS domain CH54_3023 PF01722 BolA-like protein CH54_3024 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH54_3025 PF13180 PDZ domain CH54_3026 PF13180 PDZ domain CH54_3026 PF00595 PDZ domain CH54_3027 PF06295 Protein of unknown function (DUF1043) CH54_3028 PF03969 AFG1-like ATPase CH54_3029 PF00572 Ribosomal protein L13 CH54_303 PF00877 NlpC/P60 family CH54_3030 PF00380 Ribosomal protein S9/S16 CH54_3031 PF00043 Glutathione S-transferase, C-terminal domain CH54_3031 PF02798 Glutathione S-transferase, N-terminal domain CH54_3032 PF04386 Stringent starvation protein B CH54_3034 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CH54_3034 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_3035 PF01493 GXGXG motif CH54_3035 PF01645 Conserved region in glutamate synthase CH54_3035 PF04898 Glutamate synthase central domain CH54_3035 PF00310 Glutamine amidotransferases class-II CH54_3036 PF16199 Radical_SAM C-terminal domain CH54_3036 PF04055 Radical SAM superfamily CH54_3037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3037 PF00512 His Kinase A (phospho-acceptor) domain CH54_3037 PF00989 PAS fold CH54_3037 PF00072 Response regulator receiver domain CH54_3037 PF01627 Hpt domain CH54_3037 PF18415 Histidine kinase receptor ArcB trans-membrane domain CH54_3039 PF00912 Transglycosylase CH54_304 PF00462 Glutaredoxin CH54_3040 PF04972 BON domain CH54_3041 PF13580 SIS domain CH54_3042 PF02021 Uncharacterised protein family UPF0102 CH54_3043 PF04348 LppC putative lipoprotein CH54_3044 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_305 PF00929 Exonuclease CH54_3051 PF00239 Resolvase, N terminal domain CH54_3051 PF02796 Helix-turn-helix domain of resolvase CH54_3053 PF00145 C-5 cytosine-specific DNA methylase CH54_3055 PF01381 Helix-turn-helix CH54_3056 PF13599 Pentapeptide repeats (9 copies) CH54_306 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH54_3060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3060 PF03466 LysR substrate binding domain CH54_3061 PF00248 Aldo/keto reductase family CH54_3063 PF00106 short chain dehydrogenase CH54_3064 PF08240 Alcohol dehydrogenase GroES-like domain CH54_3064 PF00107 Zinc-binding dehydrogenase CH54_3065 PF02678 Pirin CH54_3065 PF17954 Quercetinase C-terminal cupin domain CH54_3066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3066 PF03466 LysR substrate binding domain CH54_3067 PF13409 Glutathione S-transferase, N-terminal domain CH54_3068 PF07681 DoxX CH54_3069 PF13997 YqjK-like protein CH54_307 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH54_3070 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CH54_3071 PF05957 Bacterial protein of unknown function (DUF883) CH54_3073 PF13721 SecD export protein N-terminal TM region CH54_3074 PF09335 SNARE associated Golgi protein CH54_3076 PF00392 Bacterial regulatory proteins, gntR family CH54_3076 PF07729 FCD domain CH54_3077 PF07690 Major Facilitator Superfamily CH54_3078 PF02614 Glucuronate isomerase CH54_3079 PF08125 Mannitol dehydrogenase C-terminal domain CH54_3079 PF01232 Mannitol dehydrogenase Rossmann domain CH54_308 PF00440 Bacterial regulatory proteins, tetR family CH54_308 PF16925 Tetracyclin repressor-like, C-terminal domain CH54_3080 PF08666 SAF domain CH54_3080 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CH54_3081 PF10688 Bacterial inner membrane protein CH54_3082 PF00375 Sodium:dicarboxylate symporter family CH54_3083 PF03741 Integral membrane protein TerC family CH54_3084 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_3085 PF01863 Protein of unknown function DUF45 CH54_3087 PF05175 Methyltransferase small domain CH54_3088 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CH54_3088 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_309 PF00884 Sulfatase CH54_309 PF08019 Phosphoethanolamine transferase EptA/EptB CH54_3090 PF03729 Short repeat of unknown function (DUF308) CH54_3092 PF00282 Pyridoxal-dependent decarboxylase conserved domain CH54_3093 PF13520 Amino acid permease CH54_3094 PF04960 Glutaminase CH54_3095 PF00367 phosphotransferase system, EIIB CH54_3095 PF02378 Phosphotransferase system, EIIC CH54_3096 PF13580 SIS domain CH54_3097 PF01380 SIS domain CH54_3097 PF01418 Helix-turn-helix domain, rpiR family CH54_3098 PF00933 Glycosyl hydrolase family 3 N terminal domain CH54_3098 PF01915 Glycosyl hydrolase family 3 C-terminal domain CH54_31 PF09611 CRISPR-associated protein (Cas_Csy1) CH54_3100 PF07075 Protein of unknown function (DUF1343) CH54_3102 PF04539 Sigma-70 region 3 CH54_3102 PF03979 Sigma-70 factor, region 1.1 CH54_3102 PF00140 Sigma-70 factor, region 1.2 CH54_3102 PF04545 Sigma-70, region 4 CH54_3102 PF04546 Sigma-70, non-essential region CH54_3102 PF04542 Sigma-70 region 2 CH54_3103 PF10410 DnaB-helicase binding domain of primase CH54_3103 PF08278 DNA primase DnaG DnaB-binding CH54_3103 PF08275 DNA primase catalytic core, N-terminal domain CH54_3103 PF01807 CHC2 zinc finger CH54_3104 PF01165 Ribosomal protein S21 CH54_3106 PF00814 Glycoprotease family CH54_3107 PF02660 Glycerol-3-phosphate acyltransferase CH54_3108 PF02152 Dihydroneopterin aldolase CH54_3109 PF02673 Bacitracin resistance protein BacA CH54_311 PF06945 Protein of unknown function (DUF1289) CH54_3110 PF01743 Poly A polymerase head domain CH54_3110 PF01966 HD domain CH54_3110 PF12627 Probable RNA and SrmB- binding site of polymerase A CH54_3111 PF08239 Bacterial SH3 domain CH54_3112 PF01928 CYTH domain CH54_3113 PF03710 Glutamate-ammonia ligase adenylyltransferase CH54_3113 PF08335 GlnD PII-uridylyltransferase CH54_3114 PF01467 Cytidylyltransferase-like CH54_3114 PF00294 pfkB family carbohydrate kinase CH54_3115 PF13520 Amino acid permease CH54_3116 PF04380 Membrane fusogenic activity CH54_3117 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CH54_3118 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CH54_3119 PF03738 Glutathionylspermidine synthase preATP-grasp CH54_3120 PF06693 Protein of unknown function (DUF1190) CH54_3121 PF02321 Outer membrane efflux protein CH54_3122 PF00293 NUDIX domain CH54_3123 PF06853 Protein of unknown function (DUF1249) CH54_3124 PF00149 Calcineurin-like phosphoesterase CH54_3125 PF05728 Uncharacterised protein family (UPF0227) CH54_3126 PF00986 DNA gyrase B subunit, carboxyl terminus CH54_3126 PF00204 DNA gyrase B CH54_3126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3126 PF01751 Toprim domain CH54_3127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3127 PF03466 LysR substrate binding domain CH54_3128 PF03992 Antibiotic biosynthesis monooxygenase CH54_3129 PF02525 Flavodoxin-like fold CH54_313 PF00248 Aldo/keto reductase family CH54_3130 PF03989 DNA gyrase C-terminal domain, beta-propeller CH54_3130 PF00521 DNA gyrase/topoisomerase IV, subunit A CH54_3131 PF01553 Acyltransferase CH54_3132 PF07731 Multicopper oxidase CH54_3132 PF07732 Multicopper oxidase CH54_3133 PF11842 Domain of unknown function (DUF3362) CH54_3133 PF08497 Radical SAM N-terminal CH54_3133 PF04055 Radical SAM superfamily CH54_3134 PF00248 Aldo/keto reductase family CH54_3135 PF00465 Iron-containing alcohol dehydrogenase CH54_3136 PF06719 AraC-type transcriptional regulator N-terminus CH54_3136 PF12833 Helix-turn-helix domain CH54_3137 PF09335 SNARE associated Golgi protein CH54_3138 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_3139 PF01618 MotA/TolQ/ExbB proton channel family CH54_314 PF04632 Fusaric acid resistance protein family CH54_3140 PF02472 Biopolymer transport protein ExbD/TolR CH54_3147 PF00437 Type II/IV secretion system protein CH54_315 PF00529 HlyD membrane-fusion protein of T1SS CH54_315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_3150 PF04972 BON domain CH54_3150 PF00263 Bacterial type II and III secretion system protein CH54_3150 PF13629 Pilus formation protein N terminal region CH54_3155 PF13532 2OG-Fe(II) oxygenase superfamily CH54_3156 PF00873 AcrB/AcrD/AcrF family CH54_3157 PF00529 HlyD membrane-fusion protein of T1SS CH54_3157 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_316 PF07869 Protein of unknown function (DUF1656) CH54_3161 PF07715 TonB-dependent Receptor Plug Domain CH54_3161 PF00593 TonB dependent receptor CH54_3162 PF00756 Putative esterase CH54_3162 PF11806 Domain of unknown function (DUF3327) CH54_3163 PF03621 MbtH-like protein CH54_3164 PF13193 AMP-binding enzyme C-terminal domain CH54_3164 PF00975 Thioesterase domain CH54_3164 PF00550 Phosphopantetheine attachment site CH54_3164 PF00501 AMP-binding enzyme CH54_3164 PF00668 Condensation domain CH54_3165 PF05977 Transmembrane secretion effector CH54_3167 PF01032 FecCD transport family CH54_3168 PF01032 FecCD transport family CH54_3169 PF00005 ABC transporter CH54_317 PF01047 MarR family CH54_3170 PF01497 Periplasmic binding protein CH54_3171 PF00425 chorismate binding enzyme CH54_3172 PF00501 AMP-binding enzyme CH54_3172 PF13193 AMP-binding enzyme C-terminal domain CH54_3173 PF00550 Phosphopantetheine attachment site CH54_3173 PF00857 Isochorismatase family CH54_3175 PF07690 Major Facilitator Superfamily CH54_3176 PF01370 NAD dependent epimerase/dehydratase family CH54_3178 PF00771 FHIPEP family CH54_3179 PF01312 FlhB HrpN YscU SpaS Family CH54_318 PF05433 Glycine zipper 2TM domain CH54_3180 PF01311 Bacterial export proteins, family 1 CH54_3181 PF01313 Bacterial export proteins, family 3 CH54_3182 PF00813 FliP family CH54_3183 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_3185 PF02954 Bacterial regulatory protein, Fis family CH54_3185 PF00072 Response regulator receiver domain CH54_3185 PF00158 Sigma-54 interaction domain CH54_3186 PF02049 Flagellar hook-basal body complex protein FliE CH54_3187 PF01514 Secretory protein of YscJ/FliF family CH54_3187 PF08345 Flagellar M-ring protein C-terminal CH54_319 PF03702 Anhydro-N-acetylmuramic acid kinase CH54_3190 PF18269 T3SS EscN ATPase C-terminal domain CH54_3190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_3195 PF00460 Flagella basal body rod protein CH54_3196 PF00460 Flagella basal body rod protein CH54_3196 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_3197 PF13861 FlgD Tudor-like domain CH54_3197 PF13860 FlgD Ig-like domain CH54_3197 PF03963 Flagellar hook capping protein - N-terminal region CH54_3198 PF07559 Flagellar basal body protein FlaE CH54_3198 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_3198 PF00460 Flagella basal body rod protein CH54_3199 PF00460 Flagella basal body rod protein CH54_3199 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_32 PF09614 CRISPR-associated protein (Cas_Csy2) CH54_320 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CH54_3200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_3200 PF00460 Flagella basal body rod protein CH54_3201 PF02107 Flagellar L-ring protein CH54_3202 PF02119 Flagellar P-ring protein CH54_3205 PF00669 Bacterial flagellin N-terminal helical region CH54_3208 PF00486 Transcriptional regulatory protein, C terminal CH54_3208 PF18500 CadC C-terminal domain 1 CH54_3209 PF00669 Bacterial flagellin N-terminal helical region CH54_3209 PF00700 Bacterial flagellin C-terminal helical region CH54_321 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CH54_321 PF01243 Pyridoxamine 5'-phosphate oxidase CH54_3210 PF07196 Flagellin hook IN motif CH54_3210 PF02465 Flagellar hook-associated protein 2 N-terminus CH54_3210 PF07195 Flagellar hook-associated protein 2 C-terminus CH54_3211 PF02561 Flagellar protein FliS CH54_3215 PF04545 Sigma-70, region 4 CH54_3215 PF04542 Sigma-70 region 2 CH54_3216 PF01618 MotA/TolQ/ExbB proton channel family CH54_3217 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH54_3217 PF00691 OmpA family CH54_3218 PF05433 Glycine zipper 2TM domain CH54_3219 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CH54_3219 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_322 PF01479 S4 domain CH54_322 PF00579 tRNA synthetases class I (W and Y) CH54_3220 PF13247 4Fe-4S dicluster domain CH54_3221 PF03916 Polysulphide reductase, NrfD CH54_3222 PF00374 Nickel-dependent hydrogenase CH54_3223 PF01750 Hydrogenase maturation protease CH54_3224 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CH54_3225 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CH54_3226 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_3227 PF01455 HupF/HypC family CH54_3228 PF01924 Hydrogenase formation hypA family CH54_3229 PF00586 AIR synthase related protein, N-terminal domain CH54_3229 PF02769 AIR synthase related protein, C-terminal domain CH54_323 PF08543 Phosphomethylpyrimidine kinase CH54_3230 PF00708 Acylphosphatase CH54_3230 PF07503 HypF finger CH54_3230 PF17788 HypF Kae1-like domain CH54_3230 PF01300 Telomere recombination CH54_3232 PF08448 PAS fold CH54_3232 PF08447 PAS fold CH54_3232 PF00990 Diguanylate cyclase, GGDEF domain CH54_3232 PF00563 EAL domain CH54_3233 PF00529 HlyD membrane-fusion protein of T1SS CH54_3233 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_3234 PF00873 AcrB/AcrD/AcrF family CH54_3236 PF03797 Autotransporter beta-domain CH54_3237 PF03806 AbgT putative transporter family CH54_3238 PF07687 Peptidase dimerisation domain CH54_3238 PF01546 Peptidase family M20/M25/M40 CH54_3239 PF02690 Na+/Pi-cotransporter CH54_324 PF02798 Glutathione S-transferase, N-terminal domain CH54_324 PF00043 Glutathione S-transferase, C-terminal domain CH54_3240 PF01156 Inosine-uridine preferring nucleoside hydrolase CH54_3243 PF07690 Major Facilitator Superfamily CH54_3243 PF00083 Sugar (and other) transporter CH54_3246 PF01497 Periplasmic binding protein CH54_3247 PF01032 FecCD transport family CH54_3248 PF01032 FecCD transport family CH54_3249 PF00005 ABC transporter CH54_325 PF11656 YjbD family (DUF3811) CH54_3250 PF00557 Metallopeptidase family M24 CH54_3254 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_3254 PF00529 HlyD membrane-fusion protein of T1SS CH54_3255 PF04632 Fusaric acid resistance protein family CH54_326 PF04893 Yip1 domain CH54_3262 PF00691 OmpA family CH54_3262 PF13488 Glycine zipper CH54_3264 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_3264 PF17871 AAA lid domain CH54_3264 PF07724 AAA domain (Cdc48 subfamily) CH54_3264 PF00004 ATPase family associated with various cellular activities (AAA) CH54_3266 PF00182 Chitinase class I CH54_3273 PF00182 Chitinase class I CH54_328 PF00854 POT family CH54_329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_329 PF03466 LysR substrate binding domain CH54_3293 PF00296 Luciferase-like monooxygenase CH54_3295 PF09084 NMT1/THI5 like CH54_3296 PF00005 ABC transporter CH54_3297 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3298 PF00248 Aldo/keto reductase family CH54_3299 PF03466 LysR substrate binding domain CH54_3299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_33 PF09615 CRISPR-associated protein (Cas_Csy3) CH54_3303 PF00356 Bacterial regulatory proteins, lacI family CH54_331 PF00005 ABC transporter CH54_3310 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CH54_3311 PF06755 CbtA_toxin of type IV toxin-antitoxin system CH54_3313 PF04002 RadC-like JAB domain CH54_3314 PF03230 Antirestriction protein CH54_3315 PF02574 Homocysteine S-methyltransferase CH54_332 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_332 PF00005 ABC transporter CH54_3320 PF00691 OmpA family CH54_3320 PF05736 OprF membrane domain CH54_3322 PF07724 AAA domain (Cdc48 subfamily) CH54_3322 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_3322 PF00004 ATPase family associated with various cellular activities (AAA) CH54_3322 PF17871 AAA lid domain CH54_333 PF00528 Binding-protein-dependent transport system inner membrane component CH54_333 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_334 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3340 PF06932 Protein of unknown function (DUF1283) CH54_3344 PF00580 UvrD/REP helicase N-terminal domain CH54_3344 PF13361 UvrD-like helicase C-terminal domain CH54_3349 PF00589 Phage integrase family CH54_3349 PF13356 Arm DNA-binding domain CH54_3349 PF14659 Phage integrase, N-terminal SAM-like domain CH54_335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_3350 PF13614 AAA domain CH54_3351 PF00772 DnaB-like helicase N terminal domain CH54_3351 PF03796 DnaB-like helicase C terminal domain CH54_3353 PF00665 Integrase core domain CH54_3354 PF01527 Transposase CH54_3355 PF00589 Phage integrase family CH54_3357 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CH54_3357 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CH54_3357 PF01276 Orn/Lys/Arg decarboxylase, major domain CH54_3359 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CH54_3359 PF01464 Transglycosylase SLT domain CH54_336 PF02917 Pertussis toxin, subunit 1 CH54_3360 PF04362 Bacterial Fe(2+) trafficking CH54_3361 PF00633 Helix-hairpin-helix motif CH54_3361 PF14815 NUDIX domain CH54_3361 PF10576 Iron-sulfur binding domain of endonuclease III CH54_3361 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_3362 PF02390 Putative methyltransferase CH54_3363 PF04320 Protein with unknown function (DUF469) CH54_3364 PF04960 Glutaminase CH54_3365 PF11101 Protein of unknown function (DUF2884) CH54_3366 PF06969 HemN C-terminal domain CH54_3366 PF04055 Radical SAM superfamily CH54_3367 PF01725 Ham1 family CH54_3368 PF02594 Uncharacterised ACR, YggU family COG1872 CH54_3369 PF02325 YGGT family CH54_3370 PF14748 Pyrroline-5-carboxylate reductase dimerisation CH54_3370 PF03807 NADP oxidoreductase coenzyme F420-dependent CH54_3371 PF01168 Alanine racemase, N-terminal domain CH54_3372 PF00437 Type II/IV secretion system protein CH54_3373 PF04371 Porphyromonas-type peptidyl-arginine deiminase CH54_3374 PF00795 Carbon-nitrogen hydrolase CH54_3375 PF03652 Holliday junction resolvase CH54_3376 PF02622 Uncharacterized ACR, COG1678 CH54_3377 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CH54_3377 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CH54_3378 PF04452 RNA methyltransferase CH54_3379 PF04231 Endonuclease I CH54_338 PF00158 Sigma-54 interaction domain CH54_338 PF02954 Bacterial regulatory protein, Fis family CH54_3380 PF17283 SprT-like zinc ribbon domain CH54_3380 PF10263 SprT-like family CH54_3382 PF04143 Sulphur transport CH54_3385 PF02773 S-adenosylmethionine synthetase, C-terminal domain CH54_3385 PF00438 S-adenosylmethionine synthetase, N-terminal domain CH54_3385 PF02772 S-adenosylmethionine synthetase, central domain CH54_3386 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH54_3386 PF17810 Arginine decarboxylase helical bundle domain CH54_3386 PF17944 Arginine decarboxylase C-terminal helical extension CH54_3387 PF00355 Rieske [2Fe-2S] domain CH54_3388 PF01435 Peptidase family M48 CH54_3389 PF02780 Transketolase, C-terminal domain CH54_3389 PF02779 Transketolase, pyrimidine binding domain CH54_3389 PF00456 Transketolase, thiamine diphosphate binding domain CH54_339 PF04012 PspA/IM30 family CH54_3390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_3390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_3391 PF00162 Phosphoglycerate kinase CH54_3392 PF01116 Fructose-bisphosphate aldolase class-II CH54_3394 PF00924 Mechanosensitive ion channel CH54_3394 PF05552 Conserved TM helix CH54_3395 PF01810 LysE type translocator CH54_3396 PF04402 Protein of unknown function (DUF541) CH54_3397 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3397 PF03466 LysR substrate binding domain CH54_3398 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CH54_3399 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_3399 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_3399 PF01842 ACT domain CH54_34 PF09618 CRISPR-associated protein (Cas_Csy4) CH54_340 PF06667 Phage shock protein B CH54_3400 PF01812 5-formyltetrahydrofolate cyclo-ligase family CH54_3401 PF05164 Cell division protein ZapA CH54_3402 PF03695 Uncharacterised protein family (UPF0149) CH54_3403 PF00557 Metallopeptidase family M24 CH54_3403 PF05195 Aminopeptidase P, N-terminal domain CH54_3404 PF01494 FAD binding domain CH54_3405 PF01494 FAD binding domain CH54_3406 PF08669 Glycine cleavage T-protein C-terminal barrel domain CH54_3406 PF01571 Aminomethyltransferase folate-binding domain CH54_3407 PF01597 Glycine cleavage H-protein CH54_3408 PF02347 Glycine cleavage system P-protein CH54_341 PF04024 PspC domain CH54_3411 PF03006 Haemolysin-III related CH54_3412 PF01571 Aminomethyltransferase folate-binding domain CH54_3413 PF03937 Flavinator of succinate dehydrogenase CH54_3414 PF07254 Membrane-bound toxin component of toxin-antitoxin system CH54_3415 PF00486 Transcriptional regulatory protein, C terminal CH54_3415 PF00072 Response regulator receiver domain CH54_3416 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3416 PF00512 His Kinase A (phospho-acceptor) domain CH54_3416 PF00672 HAMP domain CH54_3417 PF06123 Inner membrane protein CreD CH54_3418 PF00258 Flavodoxin CH54_3419 PF00589 Phage integrase family CH54_3419 PF02899 Phage integrase, N-terminal SAM-like domain CH54_3420 PF13098 Thioredoxin-like domain CH54_3420 PF10411 Disulfide bond isomerase protein N-terminus CH54_3421 PF02272 DHHA1 domain CH54_3421 PF01368 DHH family CH54_3421 PF17768 RecJ OB domain CH54_3422 PF00472 RF-1 domain CH54_3422 PF03462 PCRF domain CH54_3423 PF00152 tRNA synthetases class II (D, K and N) CH54_3423 PF01336 OB-fold nucleic acid binding domain CH54_3425 PF02796 Helix-turn-helix domain of resolvase CH54_3425 PF00239 Resolvase, N terminal domain CH54_3428 PF01527 Transposase CH54_3429 PF00665 Integrase core domain CH54_343 PF04317 YcjX-like family, DUF463 CH54_344 PF05128 Domain of unknown function (DUF697) CH54_3444 PF01037 Lrp/AsnC ligand binding domain CH54_3446 PF17137 Domain of unknown function (DUF5110) CH54_3446 PF16338 Domain of unknown function (DUF4968) CH54_3446 PF13802 Galactose mutarotase-like CH54_3446 PF01055 Glycosyl hydrolases family 31 CH54_3447 PF07690 Major Facilitator Superfamily CH54_3448 PF00356 Bacterial regulatory proteins, lacI family CH54_3449 PF01556 DnaJ C terminal domain CH54_3449 PF00226 DnaJ domain CH54_3452 PF01638 HxlR-like helix-turn-helix CH54_3453 PF00484 Carbonic anhydrase CH54_3456 PF00263 Bacterial type II and III secretion system protein CH54_3456 PF03958 Bacterial type II/III secretion system short domain CH54_3457 PF00437 Type II/IV secretion system protein CH54_3458 PF00482 Type II secretion system (T2SS), protein F CH54_3459 PF07963 Prokaryotic N-terminal methylation motif CH54_3459 PF08334 Type II secretion system (T2SS), protein G CH54_3461 PF07963 Prokaryotic N-terminal methylation motif CH54_3461 PF11612 Type II secretion system (T2SS), protein J CH54_3463 PF05134 Type II secretion system (T2SS), protein L CH54_3463 PF12693 GspL periplasmic domain CH54_3466 PF06750 Bacterial Peptidase A24 N-terminal domain CH54_3466 PF01478 Type IV leader peptidase family CH54_347 PF00158 Sigma-54 interaction domain CH54_347 PF18024 Helix-turn-helix domain CH54_3473 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3473 PF03466 LysR substrate binding domain CH54_3474 PF07690 Major Facilitator Superfamily CH54_3475 PF03466 LysR substrate binding domain CH54_3475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3476 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CH54_3476 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CH54_3477 PF00356 Bacterial regulatory proteins, lacI family CH54_3478 PF01568 Molydopterin dinucleotide binding domain CH54_3478 PF00384 Molybdopterin oxidoreductase CH54_3479 PF13193 AMP-binding enzyme C-terminal domain CH54_3479 PF00501 AMP-binding enzyme CH54_3479 PF01553 Acyltransferase CH54_348 PF08534 Redoxin CH54_3480 PF07690 Major Facilitator Superfamily CH54_3481 PF00248 Aldo/keto reductase family CH54_3482 PF03741 Integral membrane protein TerC family CH54_3483 PF02976 DNA mismatch repair enzyme MutH CH54_3484 PF00293 NUDIX domain CH54_3485 PF01590 GAF domain CH54_3485 PF05524 PEP-utilising enzyme, N-terminal CH54_3485 PF00391 PEP-utilising enzyme, mobile domain CH54_3485 PF02896 PEP-utilising enzyme, TIM barrel domain CH54_3486 PF01790 Prolipoprotein diacylglyceryl transferase CH54_3487 PF00303 Thymidylate synthase CH54_3488 PF07963 Prokaryotic N-terminal methylation motif CH54_3488 PF00114 Pilin (bacterial filament) CH54_349 PF00246 Zinc carboxypeptidase CH54_3491 PF07963 Prokaryotic N-terminal methylation motif CH54_3491 PF12528 Type II secretion prepilin peptidase dependent protein C CH54_3492 PF17946 RecC C-terminal domain CH54_3493 PF16187 Middle or third domain of peptidase_M16 CH54_3493 PF05193 Peptidase M16 inactive domain CH54_3493 PF00675 Insulinase (Peptidase family M16) CH54_3494 PF12705 PD-(D/E)XK nuclease superfamily CH54_3494 PF13361 UvrD-like helicase C-terminal domain CH54_3494 PF00580 UvrD/REP helicase N-terminal domain CH54_3495 PF13538 UvrD-like helicase C-terminal domain CH54_3496 PF00583 Acetyltransferase (GNAT) family CH54_3496 PF00696 Amino acid kinase family CH54_3497 PF11741 AMIN domain CH54_3497 PF01520 N-acetylmuramoyl-L-alanine amidase CH54_350 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CH54_350 PF13378 Enolase C-terminal domain-like CH54_3501 PF06725 3D domain CH54_3501 PF03562 MltA specific insert domain CH54_3502 PF02657 Fe-S metabolism associated domain CH54_3503 PF00899 ThiF family CH54_3504 PF00266 Aminotransferase class-V CH54_3505 PF06004 Bacterial protein of unknown function (DUF903) CH54_3506 PF03466 LysR substrate binding domain CH54_3506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3507 PF04241 Protein of unknown function (DUF423) CH54_3508 PF18125 RlmM ferredoxin-like domain CH54_3508 PF01728 FtsJ-like methyltransferase CH54_3509 PF01367 5'-3' exonuclease, C-terminal SAM fold CH54_3509 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CH54_351 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_3510 PF11892 Domain of unknown function (DUF3412) CH54_3510 PF03641 Possible lysine decarboxylase CH54_3510 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CH54_3511 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CH54_3511 PF14489 QueF-like protein CH54_3512 PF07348 Syd protein (SUKH-2) CH54_3513 PF04287 tRNA pseudouridine synthase C CH54_3514 PF00849 RNA pseudouridylate synthase CH54_3515 PF00258 Flavodoxin CH54_3516 PF11944 Protein of unknown function (DUF3461) CH54_3517 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CH54_3517 PF14602 Hexapeptide repeat of succinyl-transferase CH54_3517 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_3518 PF01909 Nucleotidyltransferase domain CH54_3518 PF01842 ACT domain CH54_3518 PF08335 GlnD PII-uridylyltransferase CH54_3518 PF01966 HD domain CH54_3519 PF00557 Metallopeptidase family M24 CH54_3520 PF00318 Ribosomal protein S2 CH54_3521 PF00889 Elongation factor TS CH54_3522 PF00696 Amino acid kinase family CH54_3523 PF01765 Ribosome recycling factor CH54_3524 PF13288 DXP reductoisomerase C-terminal domain CH54_3524 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CH54_3524 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CH54_3525 PF01255 Putative undecaprenyl diphosphate synthase CH54_3527 PF02163 Peptidase family M50 CH54_3527 PF17820 PDZ domain CH54_3528 PF01103 Surface antigen CH54_3528 PF07244 Surface antigen variable number repeat CH54_3529 PF03938 Outer membrane protein (OmpH-like) CH54_353 PF01544 CorA-like Mg2+ transporter protein CH54_3530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CH54_3530 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_3531 PF07977 FabA-like domain CH54_3532 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_3532 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH54_3533 PF02684 Lipid-A-disaccharide synthetase CH54_3534 PF01351 Ribonuclease HII CH54_3535 PF07733 Bacterial DNA polymerase III alpha NTPase domain CH54_3535 PF14579 Helix-hairpin-helix motif CH54_3535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CH54_3535 PF01336 OB-fold nucleic acid binding domain CH54_3535 PF02811 PHP domain CH54_3536 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CH54_354 PF01171 PP-loop family CH54_3540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CH54_3541 PF09179 TilS substrate binding domain CH54_3541 PF11734 TilS substrate C-terminal domain CH54_3541 PF01171 PP-loop family CH54_3542 PF00034 Cytochrome c CH54_3543 PF07073 Modulator of Rho-dependent transcription termination (ROF) CH54_3544 PF06786 Uncharacterised protein family (UPF0253) CH54_3545 PF07152 YaeQ protein CH54_3546 PF00472 RF-1 domain CH54_3547 PF17185 NlpE C-terminal OB domain CH54_3547 PF04170 NlpE N-terminal domain CH54_3548 PF04073 Aminoacyl-tRNA editing domain CH54_3548 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_3548 PF03129 Anticodon binding domain CH54_3549 PF18389 TrmO C-terminal domain CH54_3549 PF01980 tRNA-methyltransferase O CH54_355 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CH54_3550 PF16358 RcsF lipoprotein CH54_3551 PF03180 NLPA lipoprotein CH54_3552 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3553 PF09383 NIL domain CH54_3553 PF00005 ABC transporter CH54_356 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_356 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CH54_356 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CH54_356 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CH54_356 PF10371 Domain of unknown function CH54_3560 PF10043 Predicted periplasmic lipoprotein (DUF2279) CH54_3561 PF13091 PLD-like domain CH54_3562 PF13380 CoA binding domain CH54_3562 PF00583 Acetyltransferase (GNAT) family CH54_3562 PF13607 Succinyl-CoA ligase like flavodoxin domain CH54_3564 PF00085 Thioredoxin CH54_3565 PF08032 RNA 2'-O ribose methyltransferase substrate binding CH54_3565 PF00588 SpoU rRNA Methylase family CH54_3566 PF07690 Major Facilitator Superfamily CH54_3567 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_3567 PF00529 HlyD membrane-fusion protein of T1SS CH54_3568 PF01047 MarR family CH54_3569 PF05437 Branched-chain amino acid transport protein (AzlD) CH54_357 PF00893 Small Multidrug Resistance protein CH54_3570 PF03591 AzlC protein CH54_3571 PF07690 Major Facilitator Superfamily CH54_3572 PF00795 Carbon-nitrogen hydrolase CH54_3573 PF00155 Aminotransferase class I and II CH54_3574 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_3576 PF03079 ARD/ARD' family CH54_3577 PF01008 Initiation factor 2 subunit family CH54_3578 PF01636 Phosphotransferase enzyme family CH54_3579 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CH54_3579 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CH54_3579 PF09317 Domain of unknown function (DUF1974) CH54_358 PF02308 MgtC family CH54_3580 PF13580 SIS domain CH54_3581 PF03734 L,D-transpeptidase catalytic domain CH54_3582 PF13230 Glutamine amidotransferases class-II CH54_3583 PF11973 NQRA C-terminal domain CH54_3583 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CH54_3584 PF03116 NQR2, RnfD, RnfE family CH54_3585 PF04205 FMN-binding domain CH54_3586 PF02508 Rnf-Nqr subunit, membrane protein CH54_3587 PF02508 Rnf-Nqr subunit, membrane protein CH54_3588 PF00175 Oxidoreductase NAD-binding domain CH54_3588 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_3588 PF00970 Oxidoreductase FAD-binding domain CH54_3589 PF02424 ApbE family CH54_359 PF03891 Domain of unknown function (DUF333) CH54_3590 PF04400 (Na+)-NQR maturation NqrM CH54_3591 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_3593 PF01820 D-ala D-ala ligase N-terminus CH54_3593 PF07478 D-ala D-ala ligase C-terminus CH54_3594 PF13309 HTH domain CH54_3594 PF08348 YheO-like PAS domain CH54_3595 PF00291 Pyridoxal-phosphate dependent enzyme CH54_3597 PF00817 impB/mucB/samB family CH54_3597 PF11799 impB/mucB/samB family C-terminal domain CH54_3597 PF11798 IMS family HHH motif CH54_3598 PF07687 Peptidase dimerisation domain CH54_3598 PF01546 Peptidase family M20/M25/M40 CH54_3599 PF02706 Chain length determinant protein CH54_360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_3601 PF02350 UDP-N-acetylglucosamine 2-epimerase CH54_3602 PF01370 NAD dependent epimerase/dehydratase family CH54_3603 PF02719 Polysaccharide biosynthesis protein CH54_3603 PF08485 Polysaccharide biosynthesis protein C-terminal CH54_3608 PF13439 Glycosyltransferase Family 4 CH54_3608 PF00534 Glycosyl transferases group 1 CH54_3609 PF00534 Glycosyl transferases group 1 CH54_361 PF11739 Dicarboxylate transport CH54_3610 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CH54_3611 PF01467 Cytidylyltransferase-like CH54_3613 PF00156 Phosphoribosyl transferase domain CH54_3615 PF07417 Sigma factor-binding transcriptional regulator Crl CH54_3616 PF01472 PUA domain CH54_3616 PF00696 Amino acid kinase family CH54_3618 PF00171 Aldehyde dehydrogenase family CH54_3619 PF00294 pfkB family carbohydrate kinase CH54_362 PF13617 YnbE-like lipoprotein CH54_3620 PF04227 Indigoidine synthase A like protein CH54_3621 PF07662 Na+ dependent nucleoside transporter C-terminus CH54_3621 PF01773 Na+ dependent nucleoside transporter N-terminus CH54_3622 PF07702 UTRA domain CH54_3622 PF00392 Bacterial regulatory proteins, gntR family CH54_3623 PF02378 Phosphotransferase system, EIIC CH54_3623 PF00367 phosphotransferase system, EIIB CH54_3624 PF02056 Family 4 glycosyl hydrolase CH54_3624 PF11975 Family 4 glycosyl hydrolase C-terminal domain CH54_3625 PF07238 PilZ domain CH54_3625 PF07317 Flagellar regulator YcgR CH54_3626 PF10091 Putative glucoamylase CH54_3626 PF06165 Glycosyltransferase family 36 CH54_3626 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CH54_3629 PF08241 Methyltransferase domain CH54_363 PF07027 Protein of unknown function (DUF1318) CH54_3636 PF01202 Shikimate kinase CH54_3637 PF06865 Pyrimidine/purine nucleoside phosphorylase CH54_3638 PF04381 Putative exonuclease, RdgC CH54_3639 PF00480 ROK family CH54_364 PF02525 Flavodoxin-like fold CH54_3640 PF13476 AAA domain CH54_3641 PF00149 Calcineurin-like phosphoesterase CH54_3641 PF12320 Type 5 capsule protein repressor C-terminal domain CH54_3643 PF00072 Response regulator receiver domain CH54_3643 PF00486 Transcriptional regulatory protein, C terminal CH54_3644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3644 PF00512 His Kinase A (phospho-acceptor) domain CH54_3644 PF11808 Phosphate regulon sensor protein PhoR CH54_3644 PF00989 PAS fold CH54_3645 PF12849 PBP superfamily domain CH54_3646 PF05525 Branched-chain amino acid transport protein CH54_3647 PF00324 Amino acid permease CH54_3648 PF02903 Alpha amylase, N-terminal ig-like domain CH54_3648 PF00128 Alpha amylase, catalytic domain CH54_365 PF00271 Helicase conserved C-terminal domain CH54_365 PF11898 Domain of unknown function (DUF3418) CH54_365 PF04408 Helicase associated domain (HA2) CH54_365 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CH54_365 PF00270 DEAD/DEAH box helicase CH54_3651 PF10417 C-terminal domain of 1-Cys peroxiredoxin CH54_3651 PF00578 AhpC/TSA family CH54_3652 PF04336 Acyl carrier protein phosphodiesterase CH54_3653 PF02547 Queuosine biosynthesis protein CH54_3654 PF16168 Adhesin of bacterial autotransporter system, probable stalk CH54_3654 PF03797 Autotransporter beta-domain CH54_3654 PF13018 Extended Signal Peptide of Type V secretion system CH54_3657 PF01702 Queuine tRNA-ribosyltransferase CH54_3658 PF02699 Preprotein translocase subunit CH54_3659 PF07549 SecD/SecF GG Motif CH54_3659 PF13721 SecD export protein N-terminal TM region CH54_3659 PF02355 Protein export membrane protein CH54_3660 PF02355 Protein export membrane protein CH54_3660 PF07549 SecD/SecF GG Motif CH54_3662 PF03477 ATP cone domain CH54_3663 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CH54_3663 PF01872 RibD C-terminal domain CH54_3664 PF00885 6,7-dimethyl-8-ribityllumazine synthase CH54_3665 PF01029 NusB family CH54_3666 PF00586 AIR synthase related protein, N-terminal domain CH54_3666 PF02769 AIR synthase related protein, C-terminal domain CH54_3667 PF04608 Phosphatidylglycerophosphatase A CH54_3668 PF02779 Transketolase, pyrimidine binding domain CH54_3668 PF02780 Transketolase, C-terminal domain CH54_3668 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CH54_3669 PF00348 Polyprenyl synthetase CH54_3670 PF02609 Exonuclease VII small subunit CH54_3671 PF02568 Thiamine biosynthesis protein (ThiI) CH54_3671 PF02926 THUMP domain CH54_3672 PF01965 DJ-1/PfpI family CH54_3673 PF08546 Ketopantoate reductase PanE/ApbA C terminal CH54_3673 PF02558 Ketopantoate reductase PanE/ApbA CH54_3674 PF04461 Protein of unknown function (DUF520) CH54_3675 PF07690 Major Facilitator Superfamily CH54_3676 PF01040 UbiA prenyltransferase family CH54_3677 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CH54_3678 PF00510 Cytochrome c oxidase subunit III CH54_3679 PF00115 Cytochrome C and Quinol oxidase polypeptide I CH54_368 PF00089 Trypsin CH54_3680 PF06481 COX Aromatic Rich Motif CH54_3680 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CH54_3681 PF03502 Nucleoside-specific channel-forming protein, Tsx CH54_3682 PF07690 Major Facilitator Superfamily CH54_3683 PF03923 Uncharacterized lipoprotein CH54_3683 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH54_3684 PF01722 BolA-like protein CH54_3685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CH54_3685 PF05698 Bacterial trigger factor protein (TF) C-terminus CH54_3685 PF05697 Bacterial trigger factor protein (TF) CH54_3686 PF00574 Clp protease CH54_3687 PF07724 AAA domain (Cdc48 subfamily) CH54_3687 PF06689 ClpX C4-type zinc finger CH54_3687 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_3688 PF00004 ATPase family associated with various cellular activities (AAA) CH54_3688 PF02190 ATP-dependent protease La (LON) substrate-binding domain CH54_3688 PF05362 Lon protease (S16) C-terminal proteolytic domain CH54_3689 PF00216 Bacterial DNA-binding protein CH54_3691 PF13145 PPIC-type PPIASE domain CH54_3694 PF06508 Queuosine biosynthesis protein QueC CH54_3695 PF12793 Sugar transport-related sRNA regulator N-term CH54_3695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_3698 PF01037 Lrp/AsnC ligand binding domain CH54_3698 PF13404 AsnC-type helix-turn-helix domain CH54_3699 PF00005 ABC transporter CH54_3699 PF00664 ABC transporter transmembrane region CH54_37 PF02335 Cytochrome c552 CH54_3700 PF00005 ABC transporter CH54_3700 PF00664 ABC transporter transmembrane region CH54_3701 PF00543 Nitrogen regulatory protein P-II CH54_3702 PF00909 Ammonium Transporter Family CH54_3704 PF09619 Type III secretion system lipoprotein chaperone (YscW) CH54_3705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_3706 PF05321 Haemolysin expression modulating protein CH54_3707 PF10757 Biofilm formation regulator YbaJ CH54_3709 PF00005 ABC transporter CH54_371 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CH54_3710 PF00950 ABC 3 transport family CH54_3711 PF01297 Zinc-uptake complex component A periplasmic CH54_3712 PF00444 Ribosomal protein L36 CH54_3713 PF01197 Ribosomal protein L31 CH54_3715 PF10941 Protein of unknown function DUF2620 CH54_3716 PF01676 Metalloenzyme superfamily CH54_3717 PF01168 Alanine racemase, N-terminal domain CH54_3719 PF00873 AcrB/AcrD/AcrF family CH54_372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_372 PF00672 HAMP domain CH54_372 PF00512 His Kinase A (phospho-acceptor) domain CH54_3720 PF00529 HlyD membrane-fusion protein of T1SS CH54_3720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_3721 PF08361 MAATS-type transcriptional repressor, C-terminal region CH54_3721 PF00440 Bacterial regulatory proteins, tetR family CH54_3722 PF02635 DsrE/DsrF-like family CH54_3723 PF12795 Mechanosensitive ion channel porin domain CH54_3723 PF12794 Mechanosensitive ion channel inner membrane domain 1 CH54_3723 PF00924 Mechanosensitive ion channel CH54_3725 PF04304 Protein of unknown function (DUF454) CH54_3726 PF00156 Phosphoribosyl transferase domain CH54_3727 PF12170 DNA polymerase III tau subunit V interacting with alpha CH54_3727 PF12169 DNA polymerase III subunits gamma and tau domain III CH54_3727 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CH54_3728 PF02575 YbaB/EbfC DNA-binding family CH54_3729 PF02132 RecR protein CH54_3729 PF13662 Toprim domain CH54_373 PF00072 Response regulator receiver domain CH54_373 PF00486 Transcriptional regulatory protein, C terminal CH54_3730 PF00183 Hsp90 protein CH54_3730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3731 PF05191 Adenylate kinase, active site lid CH54_3732 PF00762 Ferrochelatase CH54_3733 PF01943 Polysaccharide biosynthesis protein CH54_3734 PF01501 Glycosyl transferase family 8 CH54_3734 PF00535 Glycosyl transferase family 2 CH54_3735 PF00535 Glycosyl transferase family 2 CH54_3736 PF00534 Glycosyl transferases group 1 CH54_3736 PF13439 Glycosyltransferase Family 4 CH54_3737 PF00534 Glycosyl transferases group 1 CH54_3737 PF13439 Glycosyltransferase Family 4 CH54_3738 PF00953 Glycosyl transferase family 4 CH54_3739 PF02719 Polysaccharide biosynthesis protein CH54_3740 PF13439 Glycosyltransferase Family 4 CH54_3740 PF00534 Glycosyl transferases group 1 CH54_3741 PF16363 GDP-mannose 4,6 dehydratase CH54_3742 PF00294 pfkB family carbohydrate kinase CH54_3743 PF00999 Sodium/hydrogen exchanger family CH54_3743 PF02254 TrkA-N domain CH54_3744 PF07690 Major Facilitator Superfamily CH54_3745 PF00149 Calcineurin-like phosphoesterase CH54_3745 PF02872 5'-nucleotidase, C-terminal domain CH54_3746 PF04073 Aminoacyl-tRNA editing domain CH54_3747 PF01963 TraB family CH54_3748 PF00403 Heavy-metal-associated domain CH54_3749 PF13411 MerR HTH family regulatory protein CH54_375 PF13520 Amino acid permease CH54_3750 PF01957 NfeD-like C-terminal, partner-binding CH54_3751 PF01145 SPFH domain / Band 7 family CH54_3751 PF16200 C-terminal region of band_7 CH54_3752 PF00085 Thioredoxin CH54_3753 PF00106 short chain dehydrogenase CH54_3754 PF13472 GDSL-like Lipase/Acylhydrolase family CH54_3755 PF00005 ABC transporter CH54_3757 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CH54_3757 PF02222 ATP-grasp domain CH54_3758 PF00731 AIR carboxylase CH54_3759 PF00149 Calcineurin-like phosphoesterase CH54_376 PF07338 Protein of unknown function (DUF1471) CH54_3760 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CH54_3761 PF09190 DALR domain CH54_3761 PF01406 tRNA synthetases class I (C) catalytic domain CH54_3763 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CH54_3763 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CH54_3765 PF00589 Phage integrase family CH54_377 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CH54_377 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CH54_377 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CH54_3776 PF03837 RecT family CH54_378 PF02233 NAD(P) transhydrogenase beta subunit CH54_379 PF00582 Universal stress protein family CH54_3793 PF03796 DnaB-like helicase C terminal domain CH54_3793 PF00772 DnaB-like helicase N terminal domain CH54_38 PF13435 Cytochrome c554 and c-prime CH54_38 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CH54_380 PF13545 Crp-like helix-turn-helix domain CH54_380 PF00027 Cyclic nucleotide-binding domain CH54_3801 PF07102 Protein of unknown function (DUF1364) CH54_3802 PF05866 Endodeoxyribonuclease RusA CH54_3806 PF00959 Phage lysozyme CH54_381 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CH54_381 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CH54_3811 PF03592 Terminase small subunit CH54_384 PF06445 GyrI-like small molecule binding domain CH54_3843 PF13356 Arm DNA-binding domain CH54_3843 PF00589 Phage integrase family CH54_3843 PF14659 Phage integrase, N-terminal SAM-like domain CH54_3845 PF01226 Formate/nitrite transporter CH54_3846 PF00005 ABC transporter CH54_3847 PF03379 CcmB protein CH54_3848 PF01578 Cytochrome C assembly protein CH54_3849 PF04995 Heme exporter protein D (CcmD) CH54_385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_385 PF03466 LysR substrate binding domain CH54_3850 PF03100 CcmE CH54_3851 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH54_3851 PF01578 Cytochrome C assembly protein CH54_3852 PF08534 Redoxin CH54_3853 PF03918 Cytochrome C biogenesis protein CH54_3854 PF03918 Cytochrome C biogenesis protein CH54_3855 PF04333 MlaA lipoprotein CH54_3856 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CH54_3857 PF04175 Protein of unknown function (DUF406) CH54_3858 PF02803 Thiolase, C-terminal domain CH54_3858 PF00108 Thiolase, N-terminal domain CH54_3859 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CH54_3859 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CH54_3859 PF00378 Enoyl-CoA hydratase/isomerase CH54_3860 PF00300 Histidine phosphatase superfamily (branch 1) CH54_3861 PF01713 Smr domain CH54_3862 PF05175 Methyltransferase small domain CH54_3863 PF01264 Chorismate synthase CH54_3864 PF03411 Penicillin-insensitive murein endopeptidase CH54_3865 PF01925 Sulfite exporter TauE/SafE CH54_3866 PF04315 Elongation factor P hydroxylase CH54_3867 PF08891 YfcL protein CH54_3868 PF01266 FAD dependent oxidoreductase CH54_3868 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CH54_3869 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_3869 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_3870 PF00990 Diguanylate cyclase, GGDEF domain CH54_3871 PF01177 Asp/Glu/Hydantoin racemase CH54_3873 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CH54_3874 PF00232 Glycosyl hydrolase family 1 CH54_3875 PF02378 Phosphotransferase system, EIIC CH54_3876 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_3877 PF00356 Bacterial regulatory proteins, lacI family CH54_3878 PF00328 Histidine phosphatase superfamily (branch 2) CH54_3879 PF03600 Citrate transporter CH54_388 PF00245 Alkaline phosphatase CH54_3881 PF11412 Disulphide bond corrector protein DsbC CH54_3881 PF02683 Cytochrome C biogenesis protein transmembrane region CH54_3883 PF00578 AhpC/TSA family CH54_3884 PF00155 Aminotransferase class I and II CH54_3886 PF00892 EamA-like transporter family CH54_3887 PF12833 Helix-turn-helix domain CH54_3888 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_3888 PF11890 Domain of unknown function (DUF3410) CH54_3888 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_3889 PF02774 Semialdehyde dehydrogenase, dimerisation domain CH54_3889 PF01118 Semialdehyde dehydrogenase, NAD binding domain CH54_3890 PF01416 tRNA pseudouridine synthase CH54_3892 PF09335 SNARE associated Golgi protein CH54_3893 PF17848 Acetyl-coA carboxylase zinc finger domain CH54_3893 PF01039 Carboxyl transferase domain CH54_3895 PF02875 Mur ligase family, glutamate ligase domain CH54_3895 PF08245 Mur ligase middle domain CH54_3897 PF05036 Sporulation related domain CH54_3898 PF02674 Colicin V production protein CH54_3899 PF00156 Phosphoribosyl transferase domain CH54_39 PF13247 4Fe-4S dicluster domain CH54_39 PF00037 4Fe-4S binding domain CH54_390 PF13419 Haloacid dehalogenase-like hydrolase CH54_3900 PF02441 Flavoprotein CH54_3901 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_3902 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3903 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3904 PF00005 ABC transporter CH54_3905 PF08338 Domain of unknown function (DUF1731) CH54_3905 PF01370 NAD dependent epimerase/dehydratase family CH54_3907 PF12850 Calcineurin-like phosphoesterase superfamily domain CH54_3908 PF00293 NUDIX domain CH54_3909 PF03611 PTS system sugar-specific permease component CH54_391 PF01842 ACT domain CH54_3911 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_3912 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_3912 PF00356 Bacterial regulatory proteins, lacI family CH54_3913 PF01515 Phosphate acetyl/butaryl transferase CH54_3913 PF07085 DRTGG domain CH54_3914 PF00871 Acetokinase family CH54_3915 PF04217 Protein of unknown function, DUF412 CH54_3916 PF03887 YfbU domain CH54_3917 PF13419 Haloacid dehalogenase-like hydrolase CH54_392 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_392 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_392 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_3920 PF02080 TrkA-C domain CH54_3920 PF03600 Citrate transporter CH54_3923 PF00155 Aminotransferase class I and II CH54_3924 PF03466 LysR substrate binding domain CH54_3924 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_3925 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CH54_3926 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CH54_3927 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CH54_3927 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CH54_3929 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_3929 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH54_3929 PF10531 SLBB domain CH54_3930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CH54_3930 PF01568 Molydopterin dinucleotide binding domain CH54_3930 PF00384 Molybdopterin oxidoreductase CH54_3930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH54_3931 PF00146 NADH dehydrogenase CH54_3932 PF12838 4Fe-4S dicluster domain CH54_3933 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CH54_3934 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CH54_3935 PF00361 Proton-conducting membrane transporter CH54_3935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CH54_3936 PF00361 Proton-conducting membrane transporter CH54_3937 PF00361 Proton-conducting membrane transporter CH54_3939 PF06496 Protein of unknown function (DUF1097) CH54_394 PF01510 N-acetylmuramoyl-L-alanine amidase CH54_3940 PF04074 YhcH/YjgK/YiaL CH54_3941 PF01202 Shikimate kinase CH54_3942 PF00106 short chain dehydrogenase CH54_3943 PF00356 Bacterial regulatory proteins, lacI family CH54_3944 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CH54_3944 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_3945 PF07690 Major Facilitator Superfamily CH54_3946 PF03928 Haem-degrading CH54_3947 PF00920 Dehydratase family CH54_3948 PF05957 Bacterial protein of unknown function (DUF883) CH54_3950 PF00425 chorismate binding enzyme CH54_3951 PF16582 Middle domain of thiamine pyrophosphate CH54_3951 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_3951 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_3952 PF12697 Alpha/beta hydrolase family CH54_3953 PF00378 Enoyl-CoA hydratase/isomerase CH54_3954 PF13378 Enolase C-terminal domain-like CH54_3955 PF13193 AMP-binding enzyme C-terminal domain CH54_3955 PF00501 AMP-binding enzyme CH54_3956 PF06628 Catalase-related immune-responsive CH54_3956 PF00199 Catalase CH54_3957 PF07437 YfaZ precursor CH54_3958 PF03222 Tryptophan/tyrosine permease family CH54_3959 PF00994 Probable molybdopterin binding domain CH54_3960 PF03974 Ecotin CH54_3961 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_3962 PF00268 Ribonucleotide reductase, small chain CH54_3963 PF02867 Ribonucleotide reductase, barrel domain CH54_3963 PF03477 ATP cone domain CH54_3963 PF00317 Ribonucleotide reductase, all-alpha domain CH54_3965 PF00521 DNA gyrase/topoisomerase IV, subunit A CH54_3965 PF03989 DNA gyrase C-terminal domain, beta-propeller CH54_3966 PF00072 Response regulator receiver domain CH54_3966 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3966 PF00512 His Kinase A (phospho-acceptor) domain CH54_3966 PF09456 RcsC Alpha-Beta-Loop (ABL) CH54_3967 PF00072 Response regulator receiver domain CH54_3967 PF00196 Bacterial regulatory proteins, luxR family CH54_3968 PF01627 Hpt domain CH54_3968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_3968 PF16359 RcsD-ABL domain CH54_3969 PF07690 Major Facilitator Superfamily CH54_3972 PF00005 ABC transporter CH54_3972 PF00664 ABC transporter transmembrane region CH54_3973 PF00529 HlyD membrane-fusion protein of T1SS CH54_3974 PF00267 Gram-negative porin CH54_3977 PF00144 Beta-lactamase CH54_3979 PF12706 Beta-lactamase superfamily domain CH54_398 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CH54_398 PF01048 Phosphorylase superfamily CH54_3980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_3980 PF00672 HAMP domain CH54_3980 PF02743 Cache domain CH54_3981 PF01278 Omptin family CH54_3982 PF06183 DinI-like family CH54_3984 PF01418 Helix-turn-helix domain, rpiR family CH54_3984 PF01380 SIS domain CH54_3985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CH54_3985 PF00367 phosphotransferase system, EIIB CH54_3985 PF02378 Phosphotransferase system, EIIC CH54_3986 PF00232 Glycosyl hydrolase family 1 CH54_3988 PF11893 Domain of unknown function (DUF3413) CH54_3988 PF00884 Sulfatase CH54_3989 PF07208 Protein of unknown function (DUF1414) CH54_3990 PF04245 37-kD nucleoid-associated bacterial protein CH54_3991 PF01386 Ribosomal L25p family CH54_3992 PF00271 Helicase conserved C-terminal domain CH54_3992 PF04851 Type III restriction enzyme, res subunit CH54_3993 PF01479 S4 domain CH54_3993 PF00849 RNA pseudouridylate synthase CH54_3994 PF07690 Major Facilitator Superfamily CH54_3995 PF13989 YejG-like protein CH54_3996 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_3996 PF00005 ABC transporter CH54_3997 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3997 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_3998 PF00528 Binding-protein-dependent transport system inner membrane component CH54_3999 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_4 PF02470 MlaD protein CH54_40 PF03916 Polysulphide reductase, NrfD CH54_4000 PF00563 EAL domain CH54_4000 PF12792 CSS motif domain associated with EAL CH54_4001 PF00877 NlpC/P60 family CH54_4002 PF02492 CobW/HypB/UreG, nucleotide-binding domain CH54_4002 PF07683 Cobalamin synthesis protein cobW C-terminal domain CH54_4004 PF07729 FCD domain CH54_4004 PF00392 Bacterial regulatory proteins, gntR family CH54_4005 PF01232 Mannitol dehydrogenase Rossmann domain CH54_4005 PF08125 Mannitol dehydrogenase C-terminal domain CH54_4006 PF03786 D-mannonate dehydratase (UxuA) CH54_4007 PF09285 Elongation factor P, C-terminal CH54_4007 PF08207 Elongation factor P (EF-P) KOW-like domain CH54_4007 PF01132 Elongation factor P (EF-P) OB domain CH54_4008 PF03222 Tryptophan/tyrosine permease family CH54_4009 PF18364 Molybdopterin oxidoreductase N-terminal domain CH54_4009 PF00384 Molybdopterin oxidoreductase CH54_4009 PF01568 Molydopterin dinucleotide binding domain CH54_401 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_4010 PF03692 Putative zinc- or iron-chelating domain CH54_4011 PF00293 NUDIX domain CH54_4011 PF13344 Haloacid dehalogenase-like hydrolase CH54_4012 PF00381 PTS HPr component phosphorylation site CH54_4012 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CH54_4013 PF00294 pfkB family carbohydrate kinase CH54_4014 PF02378 Phosphotransferase system, EIIC CH54_4014 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CH54_4015 PF01261 Xylose isomerase-like TIM barrel CH54_4016 PF03601 Conserved hypothetical protein 698 CH54_402 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4020 PF03466 LysR substrate binding domain CH54_4020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_4021 PF00324 Amino acid permease CH54_4022 PF01032 FecCD transport family CH54_4023 PF07715 TonB-dependent Receptor Plug Domain CH54_4023 PF00593 TonB dependent receptor CH54_4024 PF00043 Glutathione S-transferase, C-terminal domain CH54_4024 PF13417 Glutathione S-transferase, N-terminal domain CH54_4028 PF03180 NLPA lipoprotein CH54_4029 PF00005 ABC transporter CH54_4029 PF09383 NIL domain CH54_403 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4030 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4033 PF01053 Cys/Met metabolism PLP-dependent enzyme CH54_4034 PF00291 Pyridoxal-phosphate dependent enzyme CH54_4034 PF00571 CBS domain CH54_4035 PF07943 Penicillin-binding protein 5, C-terminal domain CH54_4035 PF00768 D-alanyl-D-alanine carboxypeptidase CH54_4036 PF03315 Serine dehydratase beta chain CH54_4036 PF03313 Serine dehydratase alpha chain CH54_4038 PF08220 DeoR-like helix-turn-helix domain CH54_4038 PF00455 DeoR C terminal sensor domain CH54_4039 PF01791 DeoC/LacD family aldolase CH54_404 PF01037 Lrp/AsnC ligand binding domain CH54_4040 PF01569 PAP2 superfamily CH54_4042 PF02080 TrkA-C domain CH54_4042 PF06826 Predicted Permease Membrane Region CH54_4043 PF00462 Glutaredoxin CH54_4044 PF07214 Protein of unknown function (DUF1418) CH54_4045 PF10722 Putative bacterial sensory transduction regulator CH54_4046 PF13416 Bacterial extracellular solute-binding protein CH54_4047 PF00005 ABC transporter CH54_4047 PF08402 TOBE domain CH54_4048 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4049 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4050 PF10767 Protein of unknown function (DUF2593) CH54_4051 PF05958 tRNA (Uracil-5-)-methyltransferase CH54_4052 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_4053 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4054 PF00528 Binding-protein-dependent transport system inner membrane component CH54_4055 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_4056 PF00005 ABC transporter CH54_4057 PF12883 Protein of unknown function (DUF3828) CH54_4058 PF01370 NAD dependent epimerase/dehydratase family CH54_4059 PF13460 NAD(P)H-binding CH54_4059 PF11066 Protein of unknown function (DUF2867) CH54_406 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_406 PF18113 Rubredoxin binding C-terminal domain CH54_4060 PF01212 Beta-eliminating lyase CH54_4062 PF00205 Thiamine pyrophosphate enzyme, central domain CH54_4062 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CH54_4062 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CH54_4063 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_4063 PF00970 Oxidoreductase FAD-binding domain CH54_4063 PF00175 Oxidoreductase NAD-binding domain CH54_4064 PF03063 Prismane/CO dehydrogenase family CH54_4065 PF03956 Lysine exporter LysO CH54_4066 PF11398 Protein of unknown function (DUF2813) CH54_4067 PF04393 Protein of unknown function (DUF535) CH54_4068 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CH54_4069 PF00005 ABC transporter CH54_4069 PF12704 MacB-like periplasmic core domain CH54_4069 PF02687 FtsX-like permease family CH54_407 PF00258 Flavodoxin CH54_407 PF00753 Metallo-beta-lactamase superfamily CH54_407 PF00301 Rubredoxin CH54_4070 PF00313 'Cold-shock' DNA-binding domain CH54_4071 PF02617 ATP-dependent Clp protease adaptor protein ClpS CH54_4072 PF00004 ATPase family associated with various cellular activities (AAA) CH54_4072 PF07724 AAA domain (Cdc48 subfamily) CH54_4072 PF17871 AAA lid domain CH54_4072 PF02861 Clp amino terminal domain, pathogenicity island component CH54_4072 PF10431 C-terminal, D2-small domain, of ClpB protein CH54_4073 PF01176 Translation initiation factor 1A / IF-1 CH54_4074 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CH54_4075 PF00664 ABC transporter transmembrane region CH54_4075 PF00005 ABC transporter CH54_4076 PF00005 ABC transporter CH54_4076 PF00664 ABC transporter transmembrane region CH54_4078 PF07992 Pyridine nucleotide-disulphide oxidoreductase CH54_408 PF01590 GAF domain CH54_408 PF00158 Sigma-54 interaction domain CH54_4080 PF01037 Lrp/AsnC ligand binding domain CH54_4081 PF01580 FtsK/SpoIIIE family CH54_4081 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CH54_4081 PF09397 Ftsk gamma domain CH54_4081 PF17854 FtsK alpha domain CH54_4082 PF03548 Outer membrane lipoprotein carrier protein LolA CH54_4083 PF12002 MgsA AAA+ ATPase C terminal CH54_4083 PF16193 AAA C-terminal domain CH54_4083 PF00004 ATPase family associated with various cellular activities (AAA) CH54_4084 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CH54_4084 PF02403 Seryl-tRNA synthetase N-terminal domain CH54_4085 PF07690 Major Facilitator Superfamily CH54_4086 PF04055 Radical SAM superfamily CH54_4087 PF02901 Pyruvate formate lyase-like CH54_4087 PF01228 Glycine radical CH54_4088 PF01226 Formate/nitrite transporter CH54_4089 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CH54_4089 PF18381 YcaO cyclodehydratase C-terminal domain CH54_409 PF02798 Glutathione S-transferase, N-terminal domain CH54_4090 PF17763 Glutaminase/Asparaginase C-terminal domain CH54_4090 PF00710 Asparaginase, N-terminal CH54_4091 PF04239 Protein of unknown function (DUF421) CH54_4092 PF00266 Aminotransferase class-V CH54_4093 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CH54_4094 PF02224 Cytidylate kinase CH54_4095 PF00575 S1 RNA binding domain CH54_4096 PF00216 Bacterial DNA-binding protein CH54_4098 PF03772 Competence protein CH54_4098 PF00753 Metallo-beta-lactamase superfamily CH54_4099 PF00005 ABC transporter CH54_4099 PF00664 ABC transporter transmembrane region CH54_41 PF01578 Cytochrome C assembly protein CH54_41 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CH54_4100 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CH54_4101 PF07063 Domain of unknown function (DUF1338) CH54_4102 PF00313 'Cold-shock' DNA-binding domain CH54_4103 PF03966 Trm112p-like protein CH54_4104 PF02348 Cytidylyltransferase CH54_4105 PF01636 Phosphotransferase enzyme family CH54_4106 PF02698 DUF218 domain CH54_4108 PF17193 MukF C-terminal domain CH54_4108 PF17192 MukF middle domain CH54_4108 PF03882 MukF winged-helix domain CH54_4109 PF04288 MukE-like family CH54_411 PF07690 Major Facilitator Superfamily CH54_4110 PF16330 MukB hinge domain CH54_4110 PF04310 MukB N-terminal CH54_4111 PF01471 Putative peptidoglycan binding domain CH54_4111 PF03734 L,D-transpeptidase catalytic domain CH54_4112 PF05951 Bacterial protein of unknown function (DUF882) CH54_4113 PF00753 Metallo-beta-lactamase superfamily CH54_4114 PF12792 CSS motif domain associated with EAL CH54_4114 PF00563 EAL domain CH54_4115 PF00155 Aminotransferase class I and II CH54_4116 PF00267 Gram-negative porin CH54_4117 PF00152 tRNA synthetases class II (D, K and N) CH54_4117 PF01336 OB-fold nucleic acid binding domain CH54_4118 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CH54_4118 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CH54_4119 PF11940 Domain of unknown function (DUF3458) Ig-like fold CH54_4119 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CH54_4119 PF01433 Peptidase family M1 domain CH54_4120 PF01180 Dihydroorotate dehydrogenase CH54_4121 PF07126 Cell-division protein ZapC CH54_4122 PF03473 MOSC domain CH54_4122 PF00111 2Fe-2S iron-sulfur cluster binding domain CH54_4122 PF03476 MOSC N-terminal beta barrel domain CH54_413 PF14535 AMP-binding enzyme C-terminal domain CH54_413 PF00501 AMP-binding enzyme CH54_42 PF08534 Redoxin CH54_420 PF01022 Bacterial regulatory protein, arsR family CH54_421 PF02040 Arsenical pump membrane protein CH54_422 PF03960 ArsC family CH54_423 PF13610 DDE domain CH54_424 PF00155 Aminotransferase class I and II CH54_425 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CH54_426 PF13610 DDE domain CH54_427 PF13610 DDE domain CH54_428 PF00106 short chain dehydrogenase CH54_429 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CH54_43 PF03918 Cytochrome C biogenesis protein CH54_430 PF06932 Protein of unknown function (DUF1283) CH54_431 PF06649 Protein of unknown function (DUF1161) CH54_432 PF00654 Voltage gated chloride channel CH54_434 PF00480 ROK family CH54_435 PF03466 LysR substrate binding domain CH54_435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_436 PF07690 Major Facilitator Superfamily CH54_438 PF05472 DNA replication terminus site-binding protein (Ter protein) CH54_439 PF00196 Bacterial regulatory proteins, luxR family CH54_440 PF00206 Lyase CH54_440 PF10415 Fumarase C C-terminus CH54_441 PF01238 Phosphomannose isomerase type I CH54_442 PF06097 Bacterial protein of unknown function (DUF945) CH54_445 PF00356 Bacterial regulatory proteins, lacI family CH54_445 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CH54_447 PF00367 phosphotransferase system, EIIB CH54_447 PF02378 Phosphotransferase system, EIIC CH54_448 PF00155 Aminotransferase class I and II CH54_449 PF00962 Adenosine/AMP deaminase CH54_450 PF13593 SBF-like CPA transporter family (DUF4137) CH54_451 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_451 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CH54_452 PF12833 Helix-turn-helix domain CH54_452 PF02311 AraC-like ligand binding domain CH54_456 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CH54_457 PF02610 L-arabinose isomerase CH54_457 PF11762 L-arabinose isomerase C-terminal domain CH54_458 PF02463 RecF/RecN/SMC N terminal domain CH54_459 PF03412 Peptidase C39 family CH54_459 PF00664 ABC transporter transmembrane region CH54_459 PF00005 ABC transporter CH54_461 PF00664 ABC transporter transmembrane region CH54_461 PF03412 Peptidase C39 family CH54_461 PF00005 ABC transporter CH54_462 PF01268 Formate--tetrahydrofolate ligase CH54_463 PF10754 Protein of unknown function (DUF2569) CH54_464 PF02508 Rnf-Nqr subunit, membrane protein CH54_465 PF04060 Putative Fe-S cluster CH54_466 PF13237 4Fe-4S dicluster domain CH54_466 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_466 PF13375 RnfC Barrel sandwich hybrid domain CH54_466 PF10531 SLBB domain CH54_467 PF12833 Helix-turn-helix domain CH54_467 PF06445 GyrI-like small molecule binding domain CH54_468 PF03116 NQR2, RnfD, RnfE family CH54_469 PF04205 FMN-binding domain CH54_47 PF02080 TrkA-C domain CH54_47 PF03471 Transporter associated domain CH54_47 PF00999 Sodium/hydrogen exchanger family CH54_470 PF02508 Rnf-Nqr subunit, membrane protein CH54_471 PF10576 Iron-sulfur binding domain of endonuclease III CH54_471 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_471 PF00633 Helix-hairpin-helix motif CH54_475 PF00384 Molybdopterin oxidoreductase CH54_477 PF00575 S1 RNA binding domain CH54_477 PF00773 RNB domain CH54_477 PF08206 Ribonuclease B OB domain CH54_478 PF02554 Carbon starvation protein CstA CH54_478 PF13722 5TM C-terminal transporter carbon starvation CstA CH54_479 PF04328 Selenoprotein, putative CH54_480 PF00923 Transaldolase/Fructose-6-phosphate aldolase CH54_481 PF08220 DeoR-like helix-turn-helix domain CH54_481 PF00455 DeoR C terminal sensor domain CH54_483 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_484 PF05433 Glycine zipper 2TM domain CH54_485 PF01253 Translation initiation factor SUI1 CH54_486 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CH54_487 PF07338 Protein of unknown function (DUF1471) CH54_489 PF18073 Rubredoxin metal binding domain CH54_49 PF01757 Acyltransferase family CH54_490 PF06305 Lipopolysaccharide assembly protein A domain CH54_491 PF01569 PAP2 superfamily CH54_492 PF00925 GTP cyclohydrolase II CH54_493 PF00330 Aconitase family (aconitate hydratase) CH54_493 PF00694 Aconitase C-terminal domain CH54_496 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_496 PF03466 LysR substrate binding domain CH54_497 PF01396 Topoisomerase DNA binding C4 zinc finger CH54_497 PF08272 Topoisomerase I zinc-ribbon-like CH54_497 PF01131 DNA topoisomerase CH54_497 PF01751 Toprim domain CH54_498 PF10692 Protein of unknown function (DUF2498) CH54_499 PF08496 Peptidase family S49 N-terminal CH54_499 PF01343 Peptidase family S49 CH54_5 PF03886 ABC-type transport auxiliary lipoprotein component CH54_50 PF04349 Periplasmic glucan biosynthesis protein, MdoG CH54_500 PF00106 short chain dehydrogenase CH54_501 PF12557 Cob(I)alamin adenosyltransferase N terminal CH54_501 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CH54_503 PF00849 RNA pseudouridylate synthase CH54_503 PF01479 S4 domain CH54_508 PF01527 Transposase CH54_509 PF00665 Integrase core domain CH54_51 PF00535 Glycosyl transferase family 2 CH54_511 PF00239 Resolvase, N terminal domain CH54_511 PF02796 Helix-turn-helix domain of resolvase CH54_515 PF00196 Bacterial regulatory proteins, luxR family CH54_519 PF02369 Bacterial Ig-like domain (group 1) CH54_519 PF07979 Intimin C-type lectin domain CH54_519 PF09134 Invasin, domain 3 CH54_519 PF11924 Inverse autotransporter, beta-domain CH54_52 PF07119 Protein of unknown function (DUF1375) CH54_521 PF00072 Response regulator receiver domain CH54_521 PF00196 Bacterial regulatory proteins, luxR family CH54_522 PF03797 Autotransporter beta-domain CH54_523 PF01300 Telomere recombination CH54_524 PF02811 PHP domain CH54_525 PF00425 chorismate binding enzyme CH54_525 PF04715 Anthranilate synthase component I, N terminal region CH54_526 PF00117 Glutamine amidotransferase class-I CH54_527 PF00591 Glycosyl transferase family, a/b domain CH54_527 PF02885 Glycosyl transferase family, helical bundle domain CH54_528 PF00218 Indole-3-glycerol phosphate synthase CH54_528 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CH54_529 PF00291 Pyridoxal-phosphate dependent enzyme CH54_530 PF00290 Tryptophan synthase alpha chain CH54_532 PF03922 OmpW family CH54_535 PF04279 Intracellular septation protein A CH54_536 PF03061 Thioesterase superfamily CH54_537 PF03544 Gram-negative bacterial TonB protein C-terminal CH54_538 PF03795 YCII-related domain CH54_541 PF00563 EAL domain CH54_542 PF13091 PLD-like domain CH54_542 PF13396 Phospholipase_D-nuclease N-terminal CH54_543 PF04269 Protein of unknown function, DUF440 CH54_544 PF00005 ABC transporter CH54_544 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_545 PF00005 ABC transporter CH54_545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_546 PF00528 Binding-protein-dependent transport system inner membrane component CH54_546 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_547 PF00528 Binding-protein-dependent transport system inner membrane component CH54_548 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_549 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_55 PF00854 POT family CH54_550 PF01914 MarC family integral membrane protein CH54_551 PF00465 Iron-containing alcohol dehydrogenase CH54_551 PF00171 Aldehyde dehydrogenase family CH54_552 PF00665 Integrase core domain CH54_553 PF01527 Transposase CH54_554 PF00265 Thymidine kinase CH54_555 PF00816 H-NS histone family CH54_556 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CH54_556 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CH54_556 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CH54_557 PF00072 Response regulator receiver domain CH54_558 PF01734 Patatin-like phospholipase CH54_56 PF07690 Major Facilitator Superfamily CH54_560 PF02810 SEC-C motif CH54_561 PF00551 Formyl transferase CH54_561 PF01842 ACT domain CH54_565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_565 PF03466 LysR substrate binding domain CH54_566 PF03372 Endonuclease/Exonuclease/phosphatase family CH54_567 PF00293 NUDIX domain CH54_568 PF07383 Protein of unknown function (DUF1496) CH54_569 PF01751 Toprim domain CH54_569 PF01131 DNA topoisomerase CH54_57 PF07681 DoxX CH54_570 PF00586 AIR synthase related protein, N-terminal domain CH54_570 PF02769 AIR synthase related protein, C-terminal domain CH54_571 PF00881 Nitroreductase family CH54_572 PF01343 Peptidase family S49 CH54_573 PF00710 Asparaginase, N-terminal CH54_573 PF17763 Glutaminase/Asparaginase C-terminal domain CH54_574 PF00857 Isochorismatase family CH54_575 PF07023 Protein of unknown function (DUF1315) CH54_576 PF01641 SelR domain CH54_577 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CH54_577 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_578 PF01263 Aldose 1-epimerase CH54_579 PF06629 MltA-interacting protein MipA CH54_580 PF08298 PrkA AAA domain CH54_580 PF06798 PrkA serine protein kinase C-terminal domain CH54_581 PF04285 Protein of unknown function (DUF444) CH54_583 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_583 PF03466 LysR substrate binding domain CH54_584 PF05726 Pirin C-terminal cupin domain CH54_584 PF02678 Pirin CH54_585 PF00990 Diguanylate cyclase, GGDEF domain CH54_585 PF13426 PAS domain CH54_585 PF00563 EAL domain CH54_586 PF07690 Major Facilitator Superfamily CH54_587 PF00842 Alanine racemase, C-terminal domain CH54_587 PF01168 Alanine racemase, N-terminal domain CH54_588 PF01266 FAD dependent oxidoreductase CH54_589 PF04293 SpoVR like protein CH54_59 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_590 PF07840 FadR C-terminal domain CH54_590 PF00392 Bacterial regulatory proteins, gntR family CH54_591 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CH54_592 PF02600 Disulfide bond formation protein DsbB CH54_593 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CH54_593 PF00132 Bacterial transferase hexapeptide (six repeats) CH54_595 PF03692 Putative zinc- or iron-chelating domain CH54_596 PF01557 Fumarylacetoacetate (FAA) hydrolase family CH54_597 PF13406 Transglycosylase SLT domain CH54_598 PF05166 YcgL domain CH54_6 PF04957 Ribosome modulation factor CH54_600 PF03775 Septum formation inhibitor MinC, C-terminal domain CH54_600 PF05209 Septum formation inhibitor MinC, N-terminal domain CH54_601 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH54_602 PF03776 Septum formation topological specificity factor MinE CH54_603 PF00570 HRDC domain CH54_603 PF01612 3'-5' exonuclease CH54_604 PF13193 AMP-binding enzyme C-terminal domain CH54_604 PF00501 AMP-binding enzyme CH54_605 PF03843 Outer membrane lipoprotein Slp family CH54_606 PF00814 Glycoprotease family CH54_607 PF04851 Type III restriction enzyme, res subunit CH54_607 PF13307 Helicase C-terminal domain CH54_608 PF01042 Endoribonuclease L-PSP CH54_609 PF00893 Small Multidrug Resistance protein CH54_610 PF00893 Small Multidrug Resistance protein CH54_611 PF01081 KDPG and KHG aldolase CH54_612 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CH54_612 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CH54_613 PF01418 Helix-turn-helix domain, rpiR family CH54_613 PF01380 SIS domain CH54_614 PF00224 Pyruvate kinase, barrel domain CH54_614 PF02887 Pyruvate kinase, alpha/beta domain CH54_615 PF03279 Bacterial lipid A biosynthesis acyltransferase CH54_616 PF01476 LysM domain CH54_616 PF01551 Peptidase family M23 CH54_616 PF08525 Opacity-associated protein A N-terminal motif CH54_617 PF01297 Zinc-uptake complex component A periplasmic CH54_618 PF00005 ABC transporter CH54_619 PF00950 ABC 3 transport family CH54_62 PF01594 AI-2E family transporter CH54_620 PF00854 POT family CH54_621 PF05496 Holliday junction DNA helicase RuvB P-loop domain CH54_621 PF17864 RuvB AAA lid domain CH54_621 PF05491 RuvB C-terminal winged helix domain CH54_622 PF01330 RuvA N terminal domain CH54_622 PF07499 RuvA, C-terminal domain CH54_623 PF02075 Crossover junction endodeoxyribonuclease RuvC CH54_624 PF01709 Transcriptional regulator CH54_625 PF00293 NUDIX domain CH54_627 PF00152 tRNA synthetases class II (D, K and N) CH54_627 PF02938 GAD domain CH54_627 PF01336 OB-fold nucleic acid binding domain CH54_628 PF00857 Isochorismatase family CH54_629 PF01904 Protein of unknown function DUF72 CH54_630 PF01124 MAPEG family CH54_631 PF13649 Methyltransferase domain CH54_632 PF08003 Protein of unknown function (DUF1698) CH54_633 PF03932 CutC family CH54_634 PF06185 YecM protein CH54_635 PF03485 Arginyl tRNA synthetase N terminal domain CH54_635 PF00750 tRNA synthetases class I (R) CH54_635 PF05746 DALR anticodon binding domain CH54_636 PF03023 Lipid II flippase MurJ CH54_637 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CH54_638 PF04337 Protein of unknown function, DUF480 CH54_639 PF13302 Acetyltransferase (GNAT) domain CH54_64 PF00196 Bacterial regulatory proteins, luxR family CH54_640 PF07690 Major Facilitator Superfamily CH54_641 PF07273 Protein of unknown function (DUF1439) CH54_642 PF02613 Nitrate reductase delta subunit CH54_643 PF02811 PHP domain CH54_644 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CH54_647 PF03009 Glycerophosphoryl diester phosphodiesterase family CH54_65 PF01266 FAD dependent oxidoreductase CH54_650 PF01740 STAS domain CH54_650 PF00916 Sulfate permease family CH54_651 PF00793 DAHP synthetase I family CH54_652 PF13369 Transglutaminase-like superfamily CH54_653 PF04247 Invasion gene expression up-regulator, SirB CH54_654 PF13847 Methyltransferase domain CH54_654 PF17827 PrmC N-terminal domain CH54_655 PF00472 RF-1 domain CH54_655 PF03462 PCRF domain CH54_656 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CH54_656 PF01488 Shikimate / quinate 5-dehydrogenase CH54_656 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CH54_657 PF03550 Outer membrane lipoprotein LolB CH54_658 PF08544 GHMP kinases C terminal CH54_658 PF00288 GHMP kinases N terminal domain CH54_659 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CH54_659 PF14572 Phosphoribosyl synthetase-associated domain CH54_66 PF13991 BssS protein family CH54_660 PF10762 Protein of unknown function (DUF2583) CH54_661 PF01195 Peptidyl-tRNA hydrolase CH54_663 PF06071 Protein of unknown function (DUF933) CH54_663 PF01926 50S ribosome-binding GTPase CH54_665 PF01476 LysM domain CH54_665 PF01551 Peptidase family M23 CH54_667 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CH54_668 PF02653 Branched-chain amino acid transport system / permease component CH54_669 PF00005 ABC transporter CH54_67 PF06183 DinI-like family CH54_670 PF13407 Periplasmic binding protein domain CH54_671 PF05962 HutD CH54_672 PF01979 Amidohydrolase family CH54_673 PF07702 UTRA domain CH54_673 PF00392 Bacterial regulatory proteins, gntR family CH54_674 PF01979 Amidohydrolase family CH54_676 PF00267 Gram-negative porin CH54_677 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CH54_678 PF04996 Succinylarginine dihydrolase CH54_679 PF00171 Aldehyde dehydrogenase family CH54_68 PF01979 Amidohydrolase family CH54_680 PF04958 Arginine N-succinyltransferase beta subunit CH54_681 PF00202 Aminotransferase class-III CH54_682 PF00392 Bacterial regulatory proteins, gntR family CH54_682 PF00155 Aminotransferase class I and II CH54_684 PF01654 Cytochrome bd terminal oxidase subunit I CH54_685 PF02322 Cytochrome bd terminal oxidase subunit II CH54_686 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CH54_686 PF00672 HAMP domain CH54_686 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_686 PF07730 Histidine kinase CH54_687 PF03466 LysR substrate binding domain CH54_687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_689 PF01699 Sodium/calcium exchanger protein CH54_69 PF03992 Antibiotic biosynthesis monooxygenase CH54_690 PF02562 PhoH-like protein CH54_693 PF13994 PgaD-like protein CH54_694 PF00535 Glycosyl transferase family 2 CH54_695 PF01522 Polysaccharide deacetylase CH54_695 PF14883 Hypothetical glycosyl hydrolase family 13 CH54_697 PF00557 Metallopeptidase family M24 CH54_697 PF05195 Aminopeptidase P, N-terminal domain CH54_698 PF11575 FhuF 2Fe-2S C-terminal domain CH54_698 PF06276 Ferric iron reductase FhuF-like transporter CH54_699 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CH54_699 PF02272 DHHA1 domain CH54_699 PF01411 tRNA synthetases class II (A) CH54_7 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_7 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_70 PF12111 Polyribonucleotide phosphorylase C terminal CH54_70 PF10150 Ribonuclease E/G family CH54_70 PF10150 Ribonuclease E/G family CH54_70 PF00575 S1 RNA binding domain CH54_70 PF00575 S1 RNA binding domain CH54_70 PF12111 Polyribonucleotide phosphorylase C terminal CH54_700 PF03466 LysR substrate binding domain CH54_700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_701 PF09313 Domain of unknown function (DUF1971) CH54_701 PF03848 Tellurite resistance protein TehB CH54_703 PF00578 AhpC/TSA family CH54_704 PF00005 ABC transporter CH54_704 PF12704 MacB-like periplasmic core domain CH54_704 PF02687 FtsX-like permease family CH54_706 PF12704 MacB-like periplasmic core domain CH54_706 PF00005 ABC transporter CH54_706 PF02687 FtsX-like permease family CH54_708 PF10634 Fe2+ transport protein CH54_709 PF03239 Iron permease FTR1 family CH54_71 PF00849 RNA pseudouridylate synthase CH54_71 PF01479 S4 domain CH54_711 PF01804 Penicillin amidase CH54_713 PF04960 Glutaminase CH54_714 PF01261 Xylose isomerase-like TIM barrel CH54_715 PF00596 Class II Aldolase and Adducin N-terminal domain CH54_716 PF07005 Sugar-binding N-terminal domain CH54_716 PF17042 Nucleotide-binding C-terminal domain CH54_717 PF08220 DeoR-like helix-turn-helix domain CH54_717 PF00455 DeoR C terminal sensor domain CH54_718 PF00989 PAS fold CH54_718 PF17203 Single cache domain 3 CH54_718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_718 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH54_719 PF00072 Response regulator receiver domain CH54_72 PF02545 Maf-like protein CH54_720 PF03390 2-hydroxycarboxylate transporter family CH54_721 PF00324 Amino acid permease CH54_728 PF01066 CDP-alcohol phosphatidyltransferase CH54_729 PF01541 GIY-YIG catalytic domain CH54_729 PF02151 UvrB/uvrC motif CH54_729 PF08459 UvrC Helix-hairpin-helix N-terminal CH54_73 PF02620 Large ribosomal RNA subunit accumulation protein YceD CH54_730 PF00072 Response regulator receiver domain CH54_730 PF00196 Bacterial regulatory proteins, luxR family CH54_731 PF10769 Protein of unknown function (DUF2594) CH54_733 PF00128 Alpha amylase, catalytic domain CH54_733 PF02806 Alpha amylase, C-terminal all-beta domain CH54_737 PF00535 Glycosyl transferase family 2 CH54_74 PF01783 Ribosomal L32p protein family CH54_740 PF00589 Phage integrase family CH54_741 PF00589 Phage integrase family CH54_743 PF00324 Amino acid permease CH54_744 PF01344 Kelch motif CH54_746 PF13693 Winged helix-turn-helix DNA-binding CH54_748 PF00083 Sugar (and other) transporter CH54_749 PF03358 NADPH-dependent FMN reductase CH54_75 PF02504 Fatty acid synthesis protein CH54_750 PF04261 Dyp-type peroxidase family CH54_751 PF09375 Imelysin CH54_751 PF13473 Cupredoxin-like domain CH54_752 PF03239 Iron permease FTR1 family CH54_753 PF00474 Sodium:solute symporter family CH54_754 PF00171 Aldehyde dehydrogenase family CH54_754 PF01619 Proline dehydrogenase CH54_754 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CH54_754 PF14850 DNA-binding domain of Proline dehydrogenase CH54_76 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CH54_76 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CH54_761 PF00291 Pyridoxal-phosphate dependent enzyme CH54_762 PF02899 Phage integrase, N-terminal SAM-like domain CH54_763 PF04542 Sigma-70 region 2 CH54_763 PF04545 Sigma-70, region 4 CH54_763 PF04539 Sigma-70 region 3 CH54_764 PF00669 Bacterial flagellin N-terminal helical region CH54_764 PF00700 Bacterial flagellin C-terminal helical region CH54_765 PF02465 Flagellar hook-associated protein 2 N-terminus CH54_765 PF07195 Flagellar hook-associated protein 2 C-terminus CH54_765 PF07196 Flagellin hook IN motif CH54_766 PF02561 Flagellar protein FliS CH54_767 PF05400 Flagellar protein FliT CH54_768 PF12833 Helix-turn-helix domain CH54_769 PF01966 HD domain CH54_77 PF00698 Acyl transferase domain CH54_770 PF00730 HhH-GPD superfamily base excision DNA repair protein CH54_772 PF02049 Flagellar hook-basal body complex protein FliE CH54_773 PF08345 Flagellar M-ring protein C-terminal CH54_773 PF01514 Secretory protein of YscJ/FliF family CH54_774 PF01706 FliG C-terminal domain CH54_774 PF14842 FliG N-terminal domain CH54_774 PF14841 FliG middle domain CH54_775 PF02108 Flagellar assembly protein FliH CH54_776 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CH54_776 PF18269 T3SS EscN ATPase C-terminal domain CH54_777 PF02050 Flagellar FliJ protein CH54_778 PF02120 Flagellar hook-length control protein FliK CH54_779 PF03748 Flagellar basal body-associated protein FliL CH54_780 PF02154 Flagellar motor switch protein FliM CH54_780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_781 PF16973 Flagellar motor switch protein FliN N-terminal CH54_781 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CH54_782 PF04347 Flagellar biosynthesis protein, FliO CH54_783 PF00813 FliP family CH54_784 PF01313 Bacterial export proteins, family 3 CH54_785 PF01311 Bacterial export proteins, family 1 CH54_786 PF00669 Bacterial flagellin N-terminal helical region CH54_787 PF00460 Flagella basal body rod protein CH54_787 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_788 PF10135 Rod binding protein CH54_788 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CH54_789 PF02119 Flagellar P-ring protein CH54_79 PF00550 Phosphopantetheine attachment site CH54_790 PF02107 Flagellar L-ring protein CH54_791 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_791 PF00460 Flagella basal body rod protein CH54_792 PF00460 Flagella basal body rod protein CH54_792 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_793 PF07559 Flagellar basal body protein FlaE CH54_793 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_793 PF00460 Flagella basal body rod protein CH54_794 PF13861 FlgD Tudor-like domain CH54_794 PF13860 FlgD Ig-like domain CH54_794 PF03963 Flagellar hook capping protein - N-terminal region CH54_795 PF00460 Flagella basal body rod protein CH54_795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CH54_796 PF00460 Flagella basal body rod protein CH54_797 PF17656 FlgA N-terminal domain CH54_797 PF13144 Chaperone for flagella basal body P-ring formation CH54_798 PF04316 Anti-sigma-28 factor, FlgM CH54_799 PF05130 FlgN protein CH54_80 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_80 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_800 PF06366 Flagellar protein FlhE CH54_802 PF00771 FHIPEP family CH54_803 PF01312 FlhB HrpN YscU SpaS Family CH54_805 PF04344 Chemotaxis phosphatase, CheZ CH54_806 PF00072 Response regulator receiver domain CH54_807 PF01339 CheB methylesterase CH54_807 PF00072 Response regulator receiver domain CH54_808 PF03705 CheR methyltransferase, all-alpha domain CH54_808 PF01739 CheR methyltransferase, SAM binding domain CH54_809 PF00672 HAMP domain CH54_809 PF02203 Tar ligand binding domain homologue CH54_809 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_81 PF01063 Amino-transferase class IV CH54_810 PF02203 Tar ligand binding domain homologue CH54_810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_810 PF00672 HAMP domain CH54_811 PF01584 CheW-like domain CH54_812 PF02895 Signal transducing histidine kinase, homodimeric domain CH54_812 PF09078 CheY binding CH54_812 PF01584 CheW-like domain CH54_812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_812 PF01627 Hpt domain CH54_813 PF00691 OmpA family CH54_813 PF13677 Membrane MotB of proton-channel complex MotA/MotB CH54_814 PF01618 MotA/TolQ/ExbB proton channel family CH54_815 PF05280 Flagellar transcriptional activator (FlhC) CH54_816 PF05247 Flagellar transcriptional activator (FlhD) CH54_817 PF00582 Universal stress protein family CH54_818 PF16884 N-terminal domain of oxidoreductase CH54_818 PF00107 Zinc-binding dehydrogenase CH54_819 PF00689 Cation transporting ATPase, C-terminus CH54_819 PF00690 Cation transporter/ATPase, N-terminus CH54_82 PF02618 YceG-like family CH54_820 PF02308 MgtC family CH54_821 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CH54_821 PF02203 Tar ligand binding domain homologue CH54_821 PF00672 HAMP domain CH54_822 PF10781 Dextransucrase DSRB CH54_823 PF00313 'Cold-shock' DNA-binding domain CH54_824 PF00356 Bacterial regulatory proteins, lacI family CH54_825 PF02929 Beta galactosidase small chain CH54_825 PF02837 Glycosyl hydrolases family 2, sugar binding domain CH54_825 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CH54_825 PF00703 Glycosyl hydrolases family 2 CH54_825 PF16353 Domain of unknown function(DUF4981) CH54_826 PF14765 Polyketide synthase dehydratase CH54_826 PF08240 Alcohol dehydrogenase GroES-like domain CH54_826 PF00107 Zinc-binding dehydrogenase CH54_826 PF16197 Ketoacyl-synthetase C-terminal extension CH54_826 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_826 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_826 PF00698 Acyl transferase domain CH54_826 PF08659 KR domain CH54_826 PF00550 Phosphopantetheine attachment site CH54_827 PF10777 Inner membrane protein YlaC CH54_83 PF02223 Thymidylate kinase CH54_830 PF14001 YdfZ protein CH54_831 PF00328 Histidine phosphatase superfamily (branch 2) CH54_832 PF00483 Nucleotidyl transferase CH54_835 PF00782 Dual specificity phosphatase, catalytic domain CH54_836 PF12146 Serine aminopeptidase, S33 CH54_836 PF12147 Putative methyltransferase CH54_839 PF01066 CDP-alcohol phosphatidyltransferase CH54_84 PF09115 DNA polymerase III, delta subunit, C terminal CH54_840 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_841 PF00577 Outer membrane usher protein CH54_841 PF13954 PapC N-terminal domain CH54_841 PF13953 PapC C-terminal domain CH54_844 PF02371 Transposase IS116/IS110/IS902 family CH54_844 PF01548 Transposase CH54_846 PF06167 Glucose-regulated metallo-peptidase M90 CH54_85 PF01026 TatD related DNase CH54_850 PF00849 RNA pseudouridylate synthase CH54_853 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_853 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH54_854 PF03480 Bacterial extracellular solute-binding protein, family 7 CH54_856 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CH54_857 PF00939 Sodium:sulfate symporter transmembrane region CH54_858 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH54_859 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CH54_859 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CH54_86 PF00367 phosphotransferase system, EIIB CH54_86 PF02378 Phosphotransferase system, EIIC CH54_860 PF04223 Citrate lyase, alpha subunit (CitF) CH54_861 PF03328 HpcH/HpaI aldolase/citrate lyase family CH54_862 PF06857 Malonate decarboxylase delta subunit (MdcD) CH54_863 PF08218 Citrate lyase ligase C-terminal domain CH54_864 PF17203 Single cache domain 3 CH54_864 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CH54_864 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_864 PF00989 PAS fold CH54_865 PF00072 Response regulator receiver domain CH54_865 PF12431 Transcriptional regulator CH54_866 PF00196 Bacterial regulatory proteins, luxR family CH54_866 PF00072 Response regulator receiver domain CH54_867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_867 PF05231 MASE1 CH54_867 PF07730 Histidine kinase CH54_868 PF07690 Major Facilitator Superfamily CH54_870 PF00528 Binding-protein-dependent transport system inner membrane component CH54_871 PF00005 ABC transporter CH54_871 PF08402 TOBE domain CH54_873 PF00067 Cytochrome P450 CH54_874 PF00005 ABC transporter CH54_875 PF04954 Siderophore-interacting protein CH54_875 PF08021 Siderophore-interacting FAD-binding domain CH54_875 PF00005 ABC transporter CH54_875 PF00664 ABC transporter transmembrane region CH54_876 PF00005 ABC transporter CH54_876 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CH54_877 PF12911 N-terminal TM domain of oligopeptide transport permease C CH54_877 PF00528 Binding-protein-dependent transport system inner membrane component CH54_878 PF00528 Binding-protein-dependent transport system inner membrane component CH54_879 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_88 PF00664 ABC transporter transmembrane region CH54_88 PF00005 ABC transporter CH54_88 PF03412 Peptidase C39 family CH54_880 PF00593 TonB dependent receptor CH54_880 PF07715 TonB-dependent Receptor Plug Domain CH54_882 PF00425 chorismate binding enzyme CH54_883 PF00501 AMP-binding enzyme CH54_883 PF13193 AMP-binding enzyme C-terminal domain CH54_885 PF00975 Thioesterase domain CH54_888 PF00501 AMP-binding enzyme CH54_888 PF00668 Condensation domain CH54_888 PF08242 Methyltransferase domain CH54_888 PF00550 Phosphopantetheine attachment site CH54_889 PF00501 AMP-binding enzyme CH54_889 PF00668 Condensation domain CH54_889 PF13193 AMP-binding enzyme C-terminal domain CH54_889 PF00550 Phosphopantetheine attachment site CH54_891 PF01648 4'-phosphopantetheinyl transferase superfamily CH54_891 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CH54_892 PF00109 Beta-ketoacyl synthase, N-terminal domain CH54_892 PF14765 Polyketide synthase dehydratase CH54_892 PF00550 Phosphopantetheine attachment site CH54_892 PF08659 KR domain CH54_892 PF00698 Acyl transferase domain CH54_892 PF16197 Ketoacyl-synthetase C-terminal extension CH54_892 PF08240 Alcohol dehydrogenase GroES-like domain CH54_892 PF02801 Beta-ketoacyl synthase, C-terminal domain CH54_892 PF08990 Erythronolide synthase docking CH54_892 PF09277 Erythronolide synthase, docking CH54_893 PF01042 Endoribonuclease L-PSP CH54_894 PF03466 LysR substrate binding domain CH54_894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_895 PF00196 Bacterial regulatory proteins, luxR family CH54_895 PF00072 Response regulator receiver domain CH54_896 PF01627 Hpt domain CH54_896 PF00512 His Kinase A (phospho-acceptor) domain CH54_896 PF00497 Bacterial extracellular solute-binding proteins, family 3 CH54_896 PF00989 PAS fold CH54_896 PF00072 Response regulator receiver domain CH54_896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CH54_898 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_898 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_899 PF00577 Outer membrane usher protein CH54_899 PF13954 PapC N-terminal domain CH54_899 PF13953 PapC C-terminal domain CH54_9 PF07977 FabA-like domain CH54_90 PF04055 Radical SAM superfamily CH54_90 PF13186 Iron-sulfur cluster-binding domain CH54_901 PF02753 Pili assembly chaperone PapD, C-terminal domain CH54_901 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CH54_903 PF00072 Response regulator receiver domain CH54_903 PF01584 CheW-like domain CH54_904 PF03466 LysR substrate binding domain CH54_904 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_905 PF00144 Beta-lactamase CH54_906 PF07690 Major Facilitator Superfamily CH54_907 PF00455 DeoR C terminal sensor domain CH54_907 PF08220 DeoR-like helix-turn-helix domain CH54_909 PF02581 Thiamine monophosphate synthase CH54_911 PF01554 MatE CH54_912 PF00764 Arginosuccinate synthase CH54_913 PF03825 Nucleoside H+ symporter CH54_914 PF01048 Phosphorylase superfamily CH54_916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CH54_916 PF03466 LysR substrate binding domain CH54_917 PF02277 Phosphoribosyltransferase CH54_918 PF00300 Histidine phosphatase superfamily (branch 1) CH54_919 PF02654 Cobalamin-5-phosphate synthase CH54_92 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CH54_92 PF12793 Sugar transport-related sRNA regulator N-term CH54_920 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CH54_921 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH54_922 PF00005 ABC transporter CH54_923 PF02361 Cobalt transport protein CH54_924 PF02553 Cobalt transport protein component CbiN CH54_925 PF01891 Cobalt uptake substrate-specific transmembrane region CH54_926 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_927 PF06180 Cobalt chelatase (CbiK) CH54_928 PF02571 Precorrin-6x reductase CbiJ/CobK CH54_929 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_93 PF08501 Shikimate dehydrogenase substrate binding domain CH54_930 PF11760 Cobalamin synthesis G N-terminal CH54_930 PF01890 Cobalamin synthesis G C-terminus CH54_930 PF11761 Cobalamin biosynthesis central region CH54_931 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_932 PF05175 Methyltransferase small domain CH54_933 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_934 PF01888 CbiD CH54_935 PF02570 Precorrin-8X methylmutase CH54_936 PF03186 CobD/Cbib protein CH54_937 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CH54_937 PF07685 CobB/CobQ-like glutamine amidotransferase domain CH54_938 PF10114 Sensory domain found in PocR CH54_938 PF12833 Helix-turn-helix domain CH54_939 PF00230 Major intrinsic protein CH54_94 PF01230 HIT domain CH54_941 PF00936 BMC domain CH54_942 PF00936 BMC domain CH54_943 PF02286 Dehydratase large subunit CH54_944 PF02288 Dehydratase medium subunit CH54_945 PF02287 Dehydratase small subunit CH54_946 PF18427 DD-reactivating factor swiveling domain CH54_946 PF08841 Diol dehydratase reactivase ATPase-like domain CH54_948 PF00936 BMC domain CH54_95 PF07233 Protein of unknown function (DUF1425) CH54_950 PF06130 Phosphate propanoyltransferase CH54_952 PF03319 Ethanolamine utilisation protein EutN/carboxysome CH54_953 PF01923 Cobalamin adenosyltransferase CH54_954 PF00171 Aldehyde dehydrogenase family CH54_955 PF00465 Iron-containing alcohol dehydrogenase CH54_956 PF13237 4Fe-4S dicluster domain CH54_956 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CH54_956 PF10531 SLBB domain CH54_956 PF13375 RnfC Barrel sandwich hybrid domain CH54_958 PF00936 BMC domain CH54_959 PF10662 Ethanolamine utilisation - propanediol utilisation CH54_96 PF13036 Peptidoglycan-synthase activator LpoB CH54_96 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CH54_960 PF00871 Acetokinase family CH54_961 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CH54_961 PF10414 Sirohaem synthase dimerisation region CH54_961 PF14824 Sirohaem biosynthesis protein central CH54_962 PF00155 Aminotransferase class I and II CH54_963 PF00288 GHMP kinases N terminal domain CH54_964 PF13407 Periplasmic binding protein domain CH54_966 PF02653 Branched-chain amino acid transport system / permease component CH54_967 PF02653 Branched-chain amino acid transport system / permease component CH54_968 PF04363 Protein of unknown function (DUF496) CH54_969 PF04632 Fusaric acid resistance protein family CH54_97 PF01636 Phosphotransferase enzyme family CH54_970 PF00501 AMP-binding enzyme CH54_970 PF07993 Male sterility protein CH54_970 PF00550 Phosphopantetheine attachment site CH54_971 PF00929 Exonuclease CH54_971 PF08411 Exonuclease C-terminal CH54_972 PF13520 Amino acid permease CH54_974 PF00465 Iron-containing alcohol dehydrogenase CH54_975 PF00005 ABC transporter CH54_976 PF02653 Branched-chain amino acid transport system / permease component CH54_977 PF01370 NAD dependent epimerase/dehydratase family CH54_978 PF08029 HisG, C-terminal domain CH54_978 PF01634 ATP phosphoribosyltransferase CH54_979 PF00815 Histidinol dehydrogenase CH54_98 PF00933 Glycosyl hydrolase family 3 N terminal domain CH54_980 PF00155 Aminotransferase class I and II CH54_981 PF00475 Imidazoleglycerol-phosphate dehydratase CH54_982 PF00117 Glutamine amidotransferase class-I CH54_983 PF00977 Histidine biosynthesis protein CH54_984 PF00977 Histidine biosynthesis protein CH54_985 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CH54_985 PF01502 Phosphoribosyl-AMP cyclohydrolase CH54_986 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CH54_986 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CH54_987 PF00483 Nucleotidyl transferase CH54_988 PF00483 Nucleotidyl transferase CH54_989 PF00571 CBS domain CH54_989 PF03471 Transporter associated domain CH54_989 PF03741 Integral membrane protein TerC family CH54_99 PF05728 Uncharacterised protein family (UPF0227) CH54_990 PF03606 C4-dicarboxylate anaerobic carrier CH54_991 PF05170 AsmA family CH54_992 PF00692 dUTPase CH54_993 PF00485 Phosphoribulokinase / Uridine kinase family CH54_994 PF10609 NUBPL iron-transfer P-loop NTPase CH54_995 PF01588 Putative tRNA binding domain CH54_995 PF09334 tRNA synthetases class I (M) CH54_999 PF07690 Major Facilitator Superfamily