CH54_1004 SM00919 Malic enzyme, NAD binding domain CH54_1004 SM01274 CH54_1004 CH54_1020 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_1021 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_1021 SM00382 ATPases associated with a variety of cellular activities CH54_1024 SM00382 ATPases associated with a variety of cellular activities CH54_1026 SM00354 helix_turn _helix lactose operon repressor CH54_103 SM00487 DEAD-like helicases superfamily CH54_103 SM00490 helicase superfamily c-terminal domain CH54_103 SM00982 CH54_103 CH54_103 SM01058 CarD-like/TRCF domain CH54_1031 SM00829 Enoylreductase CH54_1036 SM00382 ATPases associated with a variety of cellular activities CH54_1040 SM00852 Probable molybdopterin binding domain CH54_1042 SM00382 ATPases associated with a variety of cellular activities CH54_1047 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. CH54_105 SM00382 ATPases associated with a variety of cellular activities CH54_1052 SM00062 Bacterial periplasmic substrate-binding proteins CH54_1052 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_1054 SM00382 ATPases associated with a variety of cellular activities CH54_1055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_1055 SM00091 PAS domain CH54_1055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_1061 SM00487 DEAD-like helicases superfamily CH54_1061 SM00488 CH54_1061 CH54_1061 SM00491 CH54_1061 CH54_1068 SM00382 ATPases associated with a variety of cellular activities CH54_1073 SM00450 Rhodanese Homology Domain CH54_1078 SM00382 ATPases associated with a variety of cellular activities CH54_1081 SM00507 HNH nucleases CH54_1082 SM01118 CH54_1082 CH54_1089 SM00487 DEAD-like helicases superfamily CH54_1089 SM00490 helicase superfamily c-terminal domain CH54_1092 SM00382 ATPases associated with a variety of cellular activities CH54_1099 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_110 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH54_1102 SM00487 DEAD-like helicases superfamily CH54_1102 SM00490 helicase superfamily c-terminal domain CH54_1103 SM00382 ATPases associated with a variety of cellular activities CH54_1107 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_1107 SM00876 Biotin and Thiamin Synthesis associated domain CH54_111 SM00387 Histidine kinase-like ATPases CH54_111 SM00388 His Kinase A (phosphoacceptor) domain CH54_1111 SM00382 ATPases associated with a variety of cellular activities CH54_1116 SM00382 ATPases associated with a variety of cellular activities CH54_112 SM00448 cheY-homologous receiver domain CH54_112 SM00862 Transcriptional regulatory protein, C terminal CH54_1123 SM00855 Phosphoglycerate mutase family CH54_1144 SM00881 CoA binding domain CH54_1147 SM00861 Transketolase, pyrimidine binding domain CH54_1157 SM00797 Allophanate hydrolase subunit 2 CH54_1158 SM00796 Allophanate hydrolase subunit 1 CH54_1167 SM00387 Histidine kinase-like ATPases CH54_1167 SM00388 His Kinase A (phosphoacceptor) domain CH54_1168 SM00448 cheY-homologous receiver domain CH54_1168 SM00862 Transcriptional regulatory protein, C terminal CH54_1176 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_1179 SM01081 Putative carbohydrate binding domain CH54_119 SM01329 CH54_119 CH54_1196 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_1199 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_1199 SM01091 Transporter associated domain CH54_1202 SM00062 Bacterial periplasmic substrate-binding proteins CH54_1205 SM00382 ATPases associated with a variety of cellular activities CH54_1217 SM00936 Penicillin-binding protein 5, C-terminal domain CH54_1220 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_1222 SM00267 diguanylate cyclase CH54_1224 SM00357 Cold shock protein domain CH54_1226 SM00421 helix_turn_helix, Lux Regulon CH54_123 SM00354 helix_turn _helix lactose operon repressor CH54_1231 SM00382 ATPases associated with a variety of cellular activities CH54_1232 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CH54_1239 SM00354 helix_turn _helix lactose operon repressor CH54_1240 SM00867 YceI-like domain CH54_1244 SM00382 ATPases associated with a variety of cellular activities CH54_1253 SM00382 ATPases associated with a variety of cellular activities CH54_1256 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_126 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_1269 SM00387 Histidine kinase-like ATPases CH54_127 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_1270 SM00448 cheY-homologous receiver domain CH54_1270 SM00850 LytTr DNA-binding domain CH54_128 SM00342 helix_turn_helix, arabinose operon control protein CH54_1291 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_1291 SM00292 breast cancer carboxy-terminal domain CH54_1291 SM00532 Ligase N family CH54_1292 SM00771 ZipA, C-terminal domain (FtsZ-binding) CH54_1298 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_1298 SM00387 Histidine kinase-like ATPases CH54_1298 SM00388 His Kinase A (phosphoacceptor) domain CH54_1299 SM00448 cheY-homologous receiver domain CH54_1299 SM00862 Transcriptional regulatory protein, C terminal CH54_1301 SM00382 ATPases associated with a variety of cellular activities CH54_1310 SM01130 CH54_1310 CH54_1317 SM00919 Malic enzyme, NAD binding domain CH54_1317 SM01274 CH54_1317 CH54_1323 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_1326 SM00421 helix_turn_helix, Lux Regulon CH54_1326 SM00448 cheY-homologous receiver domain CH54_1329 SM00382 ATPases associated with a variety of cellular activities CH54_1345 SM01130 CH54_1345 CH54_1358 SM00382 ATPases associated with a variety of cellular activities CH54_136 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_136 SM00091 PAS domain CH54_136 SM00267 diguanylate cyclase CH54_1364 SM00924 MgtE intracellular N domain CH54_1365 SM00052 Putative diguanylate phosphodiesterase CH54_1365 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_1365 SM00091 PAS domain CH54_1365 SM00267 diguanylate cyclase CH54_137 SM00090 RIO-like kinase CH54_1371 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_1371 SM00387 Histidine kinase-like ATPases CH54_1371 SM00388 His Kinase A (phosphoacceptor) domain CH54_1372 SM00448 cheY-homologous receiver domain CH54_1372 SM00862 Transcriptional regulatory protein, C terminal CH54_1375 SM00046 Diacylglycerol kinase catalytic domain (presumed) CH54_138 SM00382 ATPases associated with a variety of cellular activities CH54_1381 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_1381 SM01134 CH54_1381 CH54_1382 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_1423 SM00507 HNH nucleases CH54_1428 SM00530 Helix-turn-helix XRE-family like proteins CH54_143 SM00342 helix_turn_helix, arabinose operon control protein CH54_1441 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_1441 SM01240 CH54_1441 CH54_1446 SM00564 beta-propeller repeat CH54_1450 SM00530 Helix-turn-helix XRE-family like proteins CH54_1451 SM00028 Tetratricopeptide repeats CH54_1453 SM00562 CH54_1453 CH54_1454 SM00247 Beta/gamma crystallins CH54_1456 SM01359 CH54_1456 CH54_1456 SM01360 CH54_1456 CH54_1457 SM00869 Autotransporter beta-domain CH54_1463 SM00271 DnaJ molecular chaperone homology domain CH54_1479 SM00938 Nitrogen regulatory protein P-II CH54_1481 SM00382 ATPases associated with a variety of cellular activities CH54_1481 SM00448 cheY-homologous receiver domain CH54_1483 SM00387 Histidine kinase-like ATPases CH54_1483 SM00388 His Kinase A (phosphoacceptor) domain CH54_1484 SM01211 CH54_1484 CH54_1485 SM00062 Bacterial periplasmic substrate-binding proteins CH54_1490 SM00421 helix_turn_helix, Lux Regulon CH54_1499 SM00358 Double-stranded RNA binding motif CH54_1499 SM00535 Ribonuclease III family CH54_1501 SM00838 Elongation factor G C-terminus CH54_1509 SM00487 DEAD-like helicases superfamily CH54_1509 SM00490 helicase superfamily c-terminal domain CH54_1511 SM00986 Uracil DNA glycosylase superfamily CH54_1511 SM00987 UreE urease accessory protein, C-terminal domain CH54_152 SM00357 Cold shock protein domain CH54_1521 SM00953 CH54_1521 CH54_1538 SM00342 helix_turn_helix, arabinose operon control protein CH54_1554 SM00988 UreE urease accessory protein, N-terminal domain CH54_1559 SM00382 ATPases associated with a variety of cellular activities CH54_1560 SM00382 ATPases associated with a variety of cellular activities CH54_1565 SM00450 Rhodanese Homology Domain CH54_1566 SM00342 helix_turn_helix, arabinose operon control protein CH54_1567 SM00357 Cold shock protein domain CH54_157 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_157 SM00091 PAS domain CH54_157 SM00267 diguanylate cyclase CH54_1575 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_1581 SM00382 ATPases associated with a variety of cellular activities CH54_1585 SM00479 CH54_1585 CH54_1588 SM00849 Metallo-beta-lactamase superfamily CH54_1589 SM00257 Lysin motif CH54_1600 SM00382 ATPases associated with a variety of cellular activities CH54_1600 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_1602 SM00363 S4 RNA-binding domain CH54_1605 SM00830 Chorismate mutase type II CH54_1606 SM00830 Chorismate mutase type II CH54_1608 SM00448 cheY-homologous receiver domain CH54_1608 SM00850 LytTr DNA-binding domain CH54_1615 SM00382 ATPases associated with a variety of cellular activities CH54_1615 SM00962 SRP54-type protein, GTPase domain CH54_1615 SM00963 SRP54-type protein, helical bundle domain CH54_1617 SM01091 Transporter associated domain CH54_1627 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH54_1629 SM00382 ATPases associated with a variety of cellular activities CH54_1635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_164 SM01091 Transporter associated domain CH54_1641 SM00382 ATPases associated with a variety of cellular activities CH54_1644 SM01012 CH54_1644 CH54_1653 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_1654 SM00838 Elongation factor G C-terminus CH54_1654 SM00889 Elongation factor G, domain IV CH54_1656 SM01235 CH54_1656 CH54_1657 SM00062 Bacterial periplasmic substrate-binding proteins CH54_1658 SM00822 CH54_1658 CH54_1661 SM00825 Beta-ketoacyl synthase CH54_1663 SM00382 ATPases associated with a variety of cellular activities CH54_1665 SM00382 ATPases associated with a variety of cellular activities CH54_1679 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CH54_1679 SM00534 ATPase domain of DNA mismatch repair MUTS family CH54_1681 SM00257 Lysin motif CH54_1688 SM00062 Bacterial periplasmic substrate-binding proteins CH54_1688 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_1690 SM00382 ATPases associated with a variety of cellular activities CH54_1707 SM01192 CH54_1707 CH54_1707 SM01193 CH54_1707 CH54_171 SM00487 DEAD-like helicases superfamily CH54_171 SM00490 helicase superfamily c-terminal domain CH54_1710 SM00954 Region found in RelA / SpoT proteins CH54_1711 SM00073 Histidine Phosphotransfer domain CH54_1711 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_1711 SM00387 Histidine kinase-like ATPases CH54_1711 SM00388 His Kinase A (phosphoacceptor) domain CH54_1711 SM00448 cheY-homologous receiver domain CH54_1712 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_1713 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_1723 SM00382 ATPases associated with a variety of cellular activities CH54_1725 SM00487 DEAD-like helicases superfamily CH54_1725 SM00490 helicase superfamily c-terminal domain CH54_1725 SM00847 Helicase associated domain (HA2) Add an annotation CH54_173 SM01022 CH54_173 CH54_1737 SM00382 ATPases associated with a variety of cellular activities CH54_1738 SM00947 Carbonic anhydrase CH54_1746 SM00912 haemagglutination activity domain CH54_1752 SM00342 helix_turn_helix, arabinose operon control protein CH54_1757 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_1757 SM00895 CH54_1757 CH54_176 SM00479 CH54_176 CH54_1760 SM00644 CH54_1760 CH54_1765 SM01240 CH54_1765 CH54_1770 SM00957 SecA DEAD-like domain CH54_1770 SM00958 SecA preprotein cross-linking domain CH54_1774 SM00864 Tubulin/FtsZ family, GTPase domain CH54_1774 SM00865 Tubulin/FtsZ family, C-terminal domain CH54_1775 SM00842 Cell division protein FtsA CH54_1790 SM00354 helix_turn _helix lactose operon repressor CH54_1796 SM00917 LeuA allosteric (dimerisation) domain CH54_1797 SM01329 CH54_1797 CH54_1808 SM00382 ATPases associated with a variety of cellular activities CH54_1810 SM00486 DNA polymerase type-B family CH54_1811 SM00487 DEAD-like helicases superfamily CH54_1811 SM00490 helicase superfamily c-terminal domain CH54_1813 SM00271 DnaJ molecular chaperone homology domain CH54_1817 SM00650 Ribosomal RNA adenine dimethylases CH54_1826 SM00851 MGS-like domain CH54_1826 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CH54_1827 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CH54_1833 SM00904 Riboflavin kinase CH54_1837 SM00271 DnaJ molecular chaperone homology domain CH54_1843 SM00852 Probable molybdopterin binding domain CH54_1849 SM00448 cheY-homologous receiver domain CH54_1849 SM00862 Transcriptional regulatory protein, C terminal CH54_1851 SM00855 Phosphoglycerate mutase family CH54_1852 SM00342 helix_turn_helix, arabinose operon control protein CH54_1852 SM00871 Bacterial transcription activator, effector binding domain CH54_1856 SM00831 Cation transporter/ATPase, N-terminus CH54_1857 SM00382 ATPases associated with a variety of cellular activities CH54_1859 SM00829 Enoylreductase CH54_1860 SM00530 Helix-turn-helix XRE-family like proteins CH54_1862 SM00382 ATPases associated with a variety of cellular activities CH54_1867 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CH54_1868 SM01133 CH54_1868 CH54_1873 SM00749 bacterial OsmY and nodulation domain CH54_1883 SM00267 diguanylate cyclase CH54_1884 SM00091 PAS domain CH54_189 SM00363 S4 RNA-binding domain CH54_1892 SM01120 CH54_1892 CH54_19 SM00851 MGS-like domain CH54_1903 SM00382 ATPases associated with a variety of cellular activities CH54_1907 SM01133 CH54_1907 CH54_1913 SM00421 helix_turn_helix, Lux Regulon CH54_1917 SM00912 haemagglutination activity domain CH54_1921 SM00487 DEAD-like helicases superfamily CH54_1941 SM00382 ATPases associated with a variety of cellular activities CH54_1942 SM00382 ATPases associated with a variety of cellular activities CH54_1945 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_1945 SM00866 CH54_1945 CH54_1950 SM00382 ATPases associated with a variety of cellular activities CH54_1951 SM00382 ATPases associated with a variety of cellular activities CH54_1953 SM00072 Guanylate kinase homologues. CH54_1955 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_1958 SM00382 ATPases associated with a variety of cellular activities CH54_1972 SM00487 DEAD-like helicases superfamily CH54_1972 SM00490 helicase superfamily c-terminal domain CH54_1973 SM00028 Tetratricopeptide repeats CH54_1974 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_1974 SM00322 K homology RNA-binding domain CH54_1975 SM01387 CH54_1975 CH54_1978 SM00173 Ras subfamily of RAS small GTPases CH54_1979 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_1979 SM00322 K homology RNA-binding domain CH54_1986 SM00382 ATPases associated with a variety of cellular activities CH54_1988 SM01103 CH54_1988 CH54_1991 SM00448 cheY-homologous receiver domain CH54_1991 SM00862 Transcriptional regulatory protein, C terminal CH54_1992 SM00387 Histidine kinase-like ATPases CH54_1992 SM00388 His Kinase A (phosphoacceptor) domain CH54_2 SM00382 ATPases associated with a variety of cellular activities CH54_2006 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_2006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_2012 SM01091 Transporter associated domain CH54_202 SM01022 CH54_202 CH54_2030 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH54_2031 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_2031 SM00357 Cold shock protein domain CH54_2031 SM00955 CH54_2031 CH54_2033 SM00788 Adenylosuccinate synthetase CH54_2035 SM00244 prohibitin homologues CH54_2036 SM00244 prohibitin homologues CH54_204 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_204 SM00091 PAS domain CH54_204 SM00267 diguanylate cyclase CH54_2040 SM00853 MutL C terminal dimerisation domain CH54_2040 SM01340 CH54_2040 CH54_2041 SM00257 Lysin motif CH54_2041 SM00646 CH54_2041 CH54_2048 SM00479 CH54_2048 CH54_205 SM00972 Spore Coat Protein U domain CH54_2060 SM00841 Elongation factor P, C-terminal CH54_2060 SM01185 CH54_2060 CH54_2064 SM00883 Chaperonin 10 Kd subunit CH54_2070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_2075 SM00858 CH54_2075 CH54_208 SM00972 Spore Coat Protein U domain CH54_209 SM00972 Spore Coat Protein U domain CH54_2092 SM00477 DNA/RNA non-specific endonuclease CH54_2092 SM00892 DNA/RNA non-specific endonuclease CH54_2098 SM00954 Region found in RelA / SpoT proteins CH54_21 SM00881 CoA binding domain CH54_210 SM00972 Spore Coat Protein U domain CH54_2125 SM00530 Helix-turn-helix XRE-family like proteins CH54_216 SM00945 ProQ/FINO family CH54_2164 SM00382 ATPases associated with a variety of cellular activities CH54_2165 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_217 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_217 SM00245 tail specific protease CH54_2178 SM00382 ATPases associated with a variety of cellular activities CH54_2188 SM00342 helix_turn_helix, arabinose operon control protein CH54_22 SM00992 Hemimethylated DNA-binding protein YccV like CH54_2201 SM00387 Histidine kinase-like ATPases CH54_2201 SM00388 His Kinase A (phosphoacceptor) domain CH54_2201 SM00448 cheY-homologous receiver domain CH54_2202 SM00421 helix_turn_helix, Lux Regulon CH54_2202 SM00448 cheY-homologous receiver domain CH54_222 SM00346 helix_turn_helix isocitrate lyase regulation CH54_2225 SM00422 helix_turn_helix, mercury resistance CH54_2228 SM00662 RNA polymerases D CH54_2229 SM00363 S4 RNA-binding domain CH54_2229 SM01390 CH54_2229 CH54_223 SM00644 CH54_223 CH54_2242 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH54_2243 SM01374 CH54_2243 CH54_2247 SM00322 K homology RNA-binding domain CH54_2250 SM01382 CH54_2250 CH54_2250 SM01383 CH54_2250 CH54_2254 SM01403 CH54_2254 CH54_2258 SM00838 Elongation factor G C-terminus CH54_2258 SM00889 Elongation factor G, domain IV CH54_2271 SM00382 ATPases associated with a variety of cellular activities CH54_2276 SM00382 ATPases associated with a variety of cellular activities CH54_2277 SM00062 Bacterial periplasmic substrate-binding proteins CH54_228 SM00382 ATPases associated with a variety of cellular activities CH54_2284 SM00100 Cyclic nucleotide-monophosphate binding domain CH54_2284 SM00419 helix_turn_helix, cAMP Regulatory protein CH54_2289 SM00382 ATPases associated with a variety of cellular activities CH54_2292 SM00354 helix_turn _helix lactose operon repressor CH54_23 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH54_2307 SM00965 Secretin and TonB N terminus short domain CH54_2316 SM00363 S4 RNA-binding domain CH54_2319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_2319 SM00387 Histidine kinase-like ATPases CH54_2319 SM00388 His Kinase A (phosphoacceptor) domain CH54_2320 SM00448 cheY-homologous receiver domain CH54_2320 SM00862 Transcriptional regulatory protein, C terminal CH54_2326 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_2326 SM00732 Likely ribonuclease with RNase H fold. CH54_2327 SM00899 CH54_2327 CH54_2336 SM00421 helix_turn_helix, Lux Regulon CH54_2337 SM00450 Rhodanese Homology Domain CH54_2339 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_2339 SM01134 CH54_2339 CH54_2346 SM00642 Alpha-amylase domain CH54_2347 SM00642 Alpha-amylase domain CH54_2349 SM00382 ATPases associated with a variety of cellular activities CH54_2356 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_2360 SM00354 helix_turn _helix lactose operon repressor CH54_2380 SM00862 Transcriptional regulatory protein, C terminal CH54_2387 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CH54_2388 SM00235 Zinc-dependent metalloprotease CH54_2397 SM00052 Putative diguanylate phosphodiesterase CH54_240 SM00382 ATPases associated with a variety of cellular activities CH54_2404 SM00052 Putative diguanylate phosphodiesterase CH54_2405 SM00028 Tetratricopeptide repeats CH54_2414 SM00382 ATPases associated with a variety of cellular activities CH54_2415 SM00382 ATPases associated with a variety of cellular activities CH54_2419 SM00912 haemagglutination activity domain CH54_2421 SM00912 haemagglutination activity domain CH54_2425 SM00387 Histidine kinase-like ATPases CH54_2426 SM00421 helix_turn_helix, Lux Regulon CH54_2426 SM00448 cheY-homologous receiver domain CH54_2434 SM00354 helix_turn _helix lactose operon repressor CH54_2437 SM00448 cheY-homologous receiver domain CH54_2438 SM00062 Bacterial periplasmic substrate-binding proteins CH54_2438 SM00387 Histidine kinase-like ATPases CH54_2438 SM00388 His Kinase A (phosphoacceptor) domain CH54_2438 SM00448 cheY-homologous receiver domain CH54_2440 SM00342 helix_turn_helix, arabinose operon control protein CH54_2442 SM00382 ATPases associated with a variety of cellular activities CH54_2449 SM00342 helix_turn_helix, arabinose operon control protein CH54_2460 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_2463 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_2463 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_2463 SM01358 CH54_2463 CH54_2465 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_2482 SM00642 Alpha-amylase domain CH54_2493 SM00387 Histidine kinase-like ATPases CH54_2493 SM00433 TopoisomeraseII CH54_2495 SM00480 DNA polymerase III beta subunit CH54_2496 SM00382 ATPases associated with a variety of cellular activities CH54_2496 SM00760 Bacterial dnaA protein helix-turn-helix domain CH54_2499 SM01234 CH54_2499 CH54_250 SM00869 Autotransporter beta-domain CH54_2504 SM00382 ATPases associated with a variety of cellular activities CH54_2504 SM00930 CH54_2504 CH54_2506 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_2506 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_2508 SM00387 Histidine kinase-like ATPases CH54_2508 SM00388 His Kinase A (phosphoacceptor) domain CH54_2509 SM00421 helix_turn_helix, Lux Regulon CH54_2509 SM00448 cheY-homologous receiver domain CH54_2515 SM00062 Bacterial periplasmic substrate-binding proteins CH54_2518 SM00382 ATPases associated with a variety of cellular activities CH54_252 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CH54_2526 SM00382 ATPases associated with a variety of cellular activities CH54_2535 SM01228 CH54_2535 CH54_2537 SM00344 helix_turn_helix ASNC type CH54_2540 SM00327 von Willebrand factor (vWF) type A domain CH54_2541 SM00382 ATPases associated with a variety of cellular activities CH54_2544 SM00382 ATPases associated with a variety of cellular activities CH54_2549 SM00354 helix_turn _helix lactose operon repressor CH54_2550 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_2550 SM00895 CH54_2550 CH54_2560 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH54_2560 SM00474 3'-5' exonuclease CH54_2560 SM00475 5'-3' exonuclease CH54_2560 SM00482 DNA polymerase A domain CH54_2563 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_2564 SM00382 ATPases associated with a variety of cellular activities CH54_2564 SM00448 cheY-homologous receiver domain CH54_2565 SM00091 PAS domain CH54_2565 SM00387 Histidine kinase-like ATPases CH54_2565 SM00388 His Kinase A (phosphoacceptor) domain CH54_2566 SM01230 CH54_2566 CH54_257 SM00873 B3/4 domain CH54_257 SM00874 tRNA synthetase B5 domain CH54_257 SM00896 Ferredoxin-fold anticodon binding domain CH54_2573 SM00421 helix_turn_helix, Lux Regulon CH54_2574 SM00421 helix_turn_helix, Lux Regulon CH54_2578 SM00487 DEAD-like helicases superfamily CH54_2578 SM00490 helicase superfamily c-terminal domain CH54_258 SM00411 bacterial (prokaryotic) histone like domain CH54_2580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_2580 SM00954 Region found in RelA / SpoT proteins CH54_2581 SM01409 CH54_2581 CH54_2582 SM00072 Guanylate kinase homologues. CH54_2583 SM00532 Ligase N family CH54_2588 SM00052 Putative diguanylate phosphodiesterase CH54_2588 SM00091 PAS domain CH54_2588 SM00267 diguanylate cyclase CH54_2590 SM00849 Metallo-beta-lactamase superfamily CH54_263 SM00382 ATPases associated with a variety of cellular activities CH54_2630 SM00479 CH54_2630 CH54_2648 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CH54_2648 SM01232 CH54_2648 CH54_2656 SM00829 Enoylreductase CH54_2660 SM00450 Rhodanese Homology Domain CH54_2664 SM00971 Serine acetyltransferase, N-terminal CH54_2666 SM00342 helix_turn_helix, arabinose operon control protein CH54_2667 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_2667 SM00387 Histidine kinase-like ATPases CH54_2667 SM00388 His Kinase A (phosphoacceptor) domain CH54_2668 SM00448 cheY-homologous receiver domain CH54_2668 SM00862 Transcriptional regulatory protein, C terminal CH54_2685 SM00382 ATPases associated with a variety of cellular activities CH54_2685 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_2688 SM00354 helix_turn _helix lactose operon repressor CH54_2689 SM00487 DEAD-like helicases superfamily CH54_2689 SM00490 helicase superfamily c-terminal domain CH54_2697 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_2705 SM00382 ATPases associated with a variety of cellular activities CH54_2726 SM00382 ATPases associated with a variety of cellular activities CH54_2734 SM00507 HNH nucleases CH54_2747 SM00487 DEAD-like helicases superfamily CH54_2747 SM00490 helicase superfamily c-terminal domain CH54_2749 SM00357 Cold shock protein domain CH54_2749 SM00382 ATPases associated with a variety of cellular activities CH54_2749 SM00959 Rho termination factor, N-terminal domain CH54_2753 SM00984 UDP binding domain CH54_2774 SM01219 CH54_2774 CH54_2789 SM00341 Helicase and RNase D C-terminal CH54_2789 SM00487 DEAD-like helicases superfamily CH54_2789 SM00490 helicase superfamily c-terminal domain CH54_2789 SM00956 CH54_2789 CH54_2808 SM00382 ATPases associated with a variety of cellular activities CH54_2808 SM00962 SRP54-type protein, GTPase domain CH54_2808 SM00963 SRP54-type protein, helical bundle domain CH54_2809 SM00382 ATPases associated with a variety of cellular activities CH54_2817 SM00382 ATPases associated with a variety of cellular activities CH54_2818 SM00382 ATPases associated with a variety of cellular activities CH54_2828 SM00382 ATPases associated with a variety of cellular activities CH54_2847 SM01004 Delta-aminolevulinic acid dehydratase CH54_2848 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH54_285 SM00382 ATPases associated with a variety of cellular activities CH54_2875 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CH54_2875 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CH54_2876 SM00649 Ribosomal protein L11/L12 CH54_2881 SM00663 RNA polymerase I subunit A N-terminus CH54_2882 SM00876 Biotin and Thiamin Synthesis associated domain CH54_2893 SM00411 bacterial (prokaryotic) histone like domain CH54_2895 SM01209 CH54_2895 CH54_2895 SM01210 CH54_2895 CH54_2896 SM00798 AICARFT/IMPCHase bienzyme CH54_2896 SM00851 MGS-like domain CH54_2908 SM00346 helix_turn_helix isocitrate lyase regulation CH54_2909 SM01018 B12 binding domain CH54_2910 SM00912 haemagglutination activity domain CH54_2920 SM00382 ATPases associated with a variety of cellular activities CH54_2926 SM00563 Phosphate acyltransferases CH54_2934 SM00829 Enoylreductase CH54_2935 SM00382 ATPases associated with a variety of cellular activities CH54_2936 SM01005 Alanine racemase, C-terminal domain CH54_2943 SM00530 Helix-turn-helix XRE-family like proteins CH54_2954 SM00357 Cold shock protein domain CH54_2955 SM00357 Cold shock protein domain CH54_2957 SM00267 diguanylate cyclase CH54_2963 SM00878 Biotin carboxylase C-terminal domain CH54_2968 SM00829 Enoylreductase CH54_2969 SM00052 Putative diguanylate phosphodiesterase CH54_2969 SM00267 diguanylate cyclase CH54_2974 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_2999 SM00831 Cation transporter/ATPase, N-terminus CH54_300 SM00354 helix_turn _helix lactose operon repressor CH54_3000 SM00354 helix_turn _helix lactose operon repressor CH54_3002 SM00642 Alpha-amylase domain CH54_3012 SM00382 ATPases associated with a variety of cellular activities CH54_3018 SM00382 ATPases associated with a variety of cellular activities CH54_3025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_3026 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_3036 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_3037 SM00073 Histidine Phosphotransfer domain CH54_3037 SM00091 PAS domain CH54_3037 SM00387 Histidine kinase-like ATPases CH54_3037 SM00388 His Kinase A (phosphoacceptor) domain CH54_3037 SM00448 cheY-homologous receiver domain CH54_3040 SM00749 bacterial OsmY and nodulation domain CH54_305 SM00479 CH54_305 CH54_3051 SM00857 Resolvase, N terminal domain CH54_3055 SM00530 Helix-turn-helix XRE-family like proteins CH54_3059 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_3063 SM00822 CH54_3063 CH54_3064 SM00829 Enoylreductase CH54_3076 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_3076 SM00895 CH54_3076 CH54_3080 SM00858 CH54_3080 CH54_3086 SM00869 Autotransporter beta-domain CH54_3103 SM00400 zinc finger CH54_3103 SM00493 CH54_3103 CH54_3103 SM00766 DNA primase DnaG DnaB-binding CH54_3107 SM01207 CH54_3107 CH54_3108 SM00905 Dihydroneopterin aldolase CH54_3110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_3111 SM00287 Bacterial SH3 domain homologues CH54_3112 SM01118 CH54_3112 CH54_3126 SM00387 Histidine kinase-like ATPases CH54_3126 SM00433 TopoisomeraseII CH54_3130 SM00434 DNA Topoisomerase IV CH54_3131 SM00563 Phosphate acyltransferases CH54_3133 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_3136 SM00342 helix_turn_helix, arabinose operon control protein CH54_3154 SM00862 Transcriptional regulatory protein, C terminal CH54_3163 SM00923 MbtH-like protein CH54_3164 SM00823 Phosphopantetheine attachment site CH54_3164 SM00824 Thioesterase CH54_3169 SM00382 ATPases associated with a variety of cellular activities CH54_317 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_3185 SM00382 ATPases associated with a variety of cellular activities CH54_3190 SM00382 ATPases associated with a variety of cellular activities CH54_3194 SM00858 CH54_3194 CH54_3208 SM00862 Transcriptional regulatory protein, C terminal CH54_322 SM00363 S4 RNA-binding domain CH54_3232 SM00052 Putative diguanylate phosphodiesterase CH54_3232 SM00091 PAS domain CH54_3232 SM00267 diguanylate cyclase CH54_3236 SM00710 Parallel beta-helix repeats CH54_3236 SM00869 Autotransporter beta-domain CH54_3249 SM00382 ATPases associated with a variety of cellular activities CH54_3264 SM00382 ATPases associated with a variety of cellular activities CH54_3264 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_3296 SM00382 ATPases associated with a variety of cellular activities CH54_3303 SM00354 helix_turn _helix lactose operon repressor CH54_3307 SM00530 Helix-turn-helix XRE-family like proteins CH54_331 SM00382 ATPases associated with a variety of cellular activities CH54_332 SM00382 ATPases associated with a variety of cellular activities CH54_3322 SM00382 ATPases associated with a variety of cellular activities CH54_3322 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_3361 SM00478 endonuclease III CH54_3361 SM00525 CH54_3361 CH54_3366 SM00729 Elongator protein 3, MiaB family, Radical SAM CH54_3368 SM01152 CH54_3368 CH54_3375 SM00732 Likely ribonuclease with RNase H fold. CH54_338 SM00382 ATPases associated with a variety of cellular activities CH54_3380 SM00731 SprT homologues. CH54_3381 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_3389 SM00861 Transketolase, pyrimidine binding domain CH54_3390 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_3403 SM01011 Aminopeptidase P, N-terminal domain CH54_3409 SM00822 CH54_3409 CH54_3415 SM00448 cheY-homologous receiver domain CH54_3415 SM00862 Transcriptional regulatory protein, C terminal CH54_3416 SM00387 Histidine kinase-like ATPases CH54_3416 SM00388 His Kinase A (phosphoacceptor) domain CH54_3422 SM00937 CH54_3422 CH54_3425 SM00857 Resolvase, N terminal domain CH54_3434 SM00530 Helix-turn-helix XRE-family like proteins CH54_3438 SM00778 Zinc-binding domain of primase-helicase CH54_3438 SM00885 D5 N terminal like CH54_3444 SM00344 helix_turn_helix ASNC type CH54_3448 SM00354 helix_turn _helix lactose operon repressor CH54_3449 SM00271 DnaJ molecular chaperone homology domain CH54_345 SM00953 CH54_345 CH54_3451 SM00822 CH54_3451 CH54_3453 SM00947 Carbonic anhydrase CH54_3457 SM00382 ATPases associated with a variety of cellular activities CH54_3467 SM00862 Transcriptional regulatory protein, C terminal CH54_347 SM00091 PAS domain CH54_347 SM00382 ATPases associated with a variety of cellular activities CH54_3472 SM00849 Metallo-beta-lactamase superfamily CH54_3477 SM00354 helix_turn _helix lactose operon repressor CH54_3479 SM00563 Phosphate acyltransferases CH54_3483 SM00927 DNA mismatch repair enzyme MutH CH54_3485 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_3495 SM00382 ATPases associated with a variety of cellular activities CH54_3497 SM00646 CH54_3497 CH54_350 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH54_3501 SM00925 MltA specific insert domain CH54_3509 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CH54_3509 SM00475 5'-3' exonuclease CH54_3518 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_3527 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CH54_3529 SM00935 Outer membrane protein (OmpH-like) CH54_3535 SM00481 DNA polymerase alpha chain like domain CH54_3541 SM00977 TilS substrate C-terminal domain CH54_3545 SM01322 CH54_3545 CH54_355 SM00148 Phospholipase C, catalytic domain (part); domain X CH54_3553 SM00382 ATPases associated with a variety of cellular activities CH54_3553 SM00930 CH54_3553 CH54_356 SM00890 Domain of unknown function CH54_3561 SM00155 Phospholipase D. Active site motifs. CH54_3562 SM00881 CoA binding domain CH54_3563 SM01144 CH54_3563 CH54_3565 SM00967 RNA 2'-O ribose methyltransferase substrate binding CH54_3568 SM00347 helix_turn_helix multiple antibiotic resistance protein CH54_3574 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_3585 SM00900 CH54_3585 CH54_3616 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CH54_3622 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_3622 SM00866 CH54_3622 CH54_3626 SM01068 Putative carbohydrate binding domain CH54_3643 SM00448 cheY-homologous receiver domain CH54_3643 SM00862 Transcriptional regulatory protein, C terminal CH54_3644 SM00091 PAS domain CH54_3644 SM00387 Histidine kinase-like ATPases CH54_3644 SM00388 His Kinase A (phosphoacceptor) domain CH54_3648 SM00642 Alpha-amylase domain CH54_365 SM00382 ATPases associated with a variety of cellular activities CH54_365 SM00487 DEAD-like helicases superfamily CH54_365 SM00490 helicase superfamily c-terminal domain CH54_365 SM00847 Helicase associated domain (HA2) Add an annotation CH54_3654 SM00869 Autotransporter beta-domain CH54_3658 SM01323 CH54_3658 CH54_3668 SM00861 Transketolase, pyrimidine binding domain CH54_367 SM00530 Helix-turn-helix XRE-family like proteins CH54_3671 SM00981 CH54_3671 CH54_368 SM00020 Trypsin-like serine protease CH54_3687 SM00382 ATPases associated with a variety of cellular activities CH54_3687 SM00994 ClpX C4-type zinc finger CH54_3687 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_3688 SM00382 ATPases associated with a variety of cellular activities CH54_3688 SM00464 Found in ATP-dependent protease La (LON) CH54_3689 SM00411 bacterial (prokaryotic) histone like domain CH54_3692 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_3698 SM00344 helix_turn_helix ASNC type CH54_3699 SM00382 ATPases associated with a variety of cellular activities CH54_3700 SM00382 ATPases associated with a variety of cellular activities CH54_3701 SM00938 Nitrogen regulatory protein P-II CH54_3709 SM00382 ATPases associated with a variety of cellular activities CH54_372 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_372 SM00387 Histidine kinase-like ATPases CH54_372 SM00388 His Kinase A (phosphoacceptor) domain CH54_3727 SM00382 ATPases associated with a variety of cellular activities CH54_3729 SM00493 CH54_3729 CH54_373 SM00448 cheY-homologous receiver domain CH54_373 SM00862 Transcriptional regulatory protein, C terminal CH54_3730 SM00387 Histidine kinase-like ATPases CH54_3749 SM00422 helix_turn_helix, mercury resistance CH54_3751 SM00244 prohibitin homologues CH54_3753 SM00822 CH54_3753 CH54_3755 SM00382 ATPases associated with a variety of cellular activities CH54_3758 SM01001 AIR carboxylase CH54_3761 SM00840 CH54_3761 CH54_377 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CH54_377 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CH54_3787 SM00530 Helix-turn-helix XRE-family like proteins CH54_3793 SM00382 ATPases associated with a variety of cellular activities CH54_380 SM00100 Cyclic nucleotide-monophosphate binding domain CH54_380 SM00419 helix_turn_helix, cAMP Regulatory protein CH54_3825 SM00635 Bacterial Ig-like domain 2 CH54_384 SM00871 Bacterial transcription activator, effector binding domain CH54_3846 SM00382 ATPases associated with a variety of cellular activities CH54_3861 SM00463 Small MutS-related domain CH54_3869 SM00825 Beta-ketoacyl synthase CH54_387 SM00822 CH54_387 CH54_3870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CH54_3870 SM00091 PAS domain CH54_3870 SM00267 diguanylate cyclase CH54_3877 SM00354 helix_turn _helix lactose operon repressor CH54_388 SM00098 Alkaline phosphatase homologues CH54_3884 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_3887 SM00342 helix_turn_helix, arabinose operon control protein CH54_3889 SM00859 Semialdehyde dehydrogenase, NAD binding domain CH54_3901 SM00062 Bacterial periplasmic substrate-binding proteins CH54_3904 SM00382 ATPases associated with a variety of cellular activities CH54_3906 SM00052 Putative diguanylate phosphodiesterase CH54_3912 SM00354 helix_turn _helix lactose operon repressor CH54_3921 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_3929 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CH54_3930 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CH54_3930 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CH54_394 SM00644 CH54_394 CH54_3943 SM00354 helix_turn _helix lactose operon repressor CH54_3949 SM00869 Autotransporter beta-domain CH54_3954 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CH54_3956 SM01060 CH54_3956 CH54_3959 SM00852 Probable molybdopterin binding domain CH54_3965 SM00434 DNA Topoisomerase IV CH54_3966 SM00387 Histidine kinase-like ATPases CH54_3966 SM00388 His Kinase A (phosphoacceptor) domain CH54_3966 SM00448 cheY-homologous receiver domain CH54_3967 SM00421 helix_turn_helix, Lux Regulon CH54_3967 SM00448 cheY-homologous receiver domain CH54_3968 SM00387 Histidine kinase-like ATPases CH54_3968 SM00388 His Kinase A (phosphoacceptor) domain CH54_3970 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CH54_3972 SM00382 ATPases associated with a variety of cellular activities CH54_3980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_3980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_3992 SM00487 DEAD-like helicases superfamily CH54_3992 SM00490 helicase superfamily c-terminal domain CH54_3993 SM00363 S4 RNA-binding domain CH54_3996 SM00382 ATPases associated with a variety of cellular activities CH54_4000 SM00052 Putative diguanylate phosphodiesterase CH54_4002 SM00833 Cobalamin synthesis protein cobW C-terminal domain CH54_4004 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_4004 SM00895 CH54_4004 CH54_4007 SM00841 Elongation factor P, C-terminal CH54_4007 SM01185 CH54_4007 CH54_401 SM00062 Bacterial periplasmic substrate-binding proteins CH54_4015 SM00518 AP endonuclease family 2 CH54_4029 SM00382 ATPases associated with a variety of cellular activities CH54_4029 SM00930 CH54_4029 CH54_4032 SM00530 Helix-turn-helix XRE-family like proteins CH54_4034 SM00116 Domain in cystathionine beta-synthase and other proteins. CH54_4035 SM00936 Penicillin-binding protein 5, C-terminal domain CH54_4038 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_4038 SM01134 CH54_4038 CH54_4039 SM01133 CH54_4039 CH54_404 SM00344 helix_turn_helix ASNC type CH54_4040 SM00014 Acid phosphatase homologues CH54_4047 SM00382 ATPases associated with a variety of cellular activities CH54_4052 SM00062 Bacterial periplasmic substrate-binding proteins CH54_4052 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_4055 SM00062 Bacterial periplasmic substrate-binding proteins CH54_4055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_4056 SM00382 ATPases associated with a variety of cellular activities CH54_4069 SM00382 ATPases associated with a variety of cellular activities CH54_407 SM00849 Metallo-beta-lactamase superfamily CH54_4070 SM00357 Cold shock protein domain CH54_4072 SM00382 ATPases associated with a variety of cellular activities CH54_4072 SM01086 C-terminal, D2-small domain, of ClpB protein CH54_4073 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_4075 SM00382 ATPases associated with a variety of cellular activities CH54_4076 SM00382 ATPases associated with a variety of cellular activities CH54_408 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_408 SM00382 ATPases associated with a variety of cellular activities CH54_4080 SM00344 helix_turn_helix ASNC type CH54_4081 SM00843 CH54_4081 CH54_4083 SM00382 ATPases associated with a variety of cellular activities CH54_4090 SM00870 CH54_4090 CH54_4095 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_4096 SM00411 bacterial (prokaryotic) histone like domain CH54_4098 SM00849 Metallo-beta-lactamase superfamily CH54_4099 SM00382 ATPases associated with a variety of cellular activities CH54_4101 SM01150 CH54_4101 CH54_4102 SM00357 Cold shock protein domain CH54_4113 SM00849 Metallo-beta-lactamase superfamily CH54_4114 SM00052 Putative diguanylate phosphodiesterase CH54_420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CH54_439 SM00421 helix_turn_helix, Lux Regulon CH54_445 SM00354 helix_turn _helix lactose operon repressor CH54_452 SM00342 helix_turn_helix, arabinose operon control protein CH54_459 SM00382 ATPases associated with a variety of cellular activities CH54_46 SM00062 Bacterial periplasmic substrate-binding proteins CH54_46 SM00448 cheY-homologous receiver domain CH54_461 SM00382 ATPases associated with a variety of cellular activities CH54_467 SM00342 helix_turn_helix, arabinose operon control protein CH54_469 SM00900 CH54_469 CH54_47 SM01091 Transporter associated domain CH54_471 SM00478 endonuclease III CH54_471 SM00525 CH54_471 CH54_477 SM00357 Cold shock protein domain CH54_477 SM00955 CH54_477 CH54_481 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_481 SM01134 CH54_481 CH54_483 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_486 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CH54_489 SM00028 Tetratricopeptide repeats CH54_491 SM00014 Acid phosphatase homologues CH54_497 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH54_497 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH54_497 SM00493 CH54_497 CH54_500 SM00822 CH54_500 CH54_503 SM00363 S4 RNA-binding domain CH54_511 SM00857 Resolvase, N terminal domain CH54_515 SM00421 helix_turn_helix, Lux Regulon CH54_519 SM00634 Bacterial Ig-like domain (group 1) CH54_521 SM00421 helix_turn_helix, Lux Regulon CH54_522 SM00869 Autotransporter beta-domain CH54_524 SM00481 DNA polymerase alpha chain like domain CH54_531 SM00749 bacterial OsmY and nodulation domain CH54_541 SM00052 Putative diguanylate phosphodiesterase CH54_542 SM00155 Phospholipase D. Active site motifs. CH54_544 SM00382 ATPases associated with a variety of cellular activities CH54_545 SM00382 ATPases associated with a variety of cellular activities CH54_555 SM00528 Domain in histone-like proteins of HNS family CH54_556 SM00984 UDP binding domain CH54_557 SM00448 cheY-homologous receiver domain CH54_569 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CH54_569 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CH54_569 SM00493 CH54_569 CH54_573 SM00870 CH54_573 CH54_577 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CH54_580 SM00763 PrkA AAA domain CH54_585 SM00052 Putative diguanylate phosphodiesterase CH54_585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CH54_585 SM00091 PAS domain CH54_585 SM00267 diguanylate cyclase CH54_587 SM01005 Alanine racemase, C-terminal domain CH54_590 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_603 SM00341 Helicase and RNase D C-terminal CH54_603 SM00474 3'-5' exonuclease CH54_607 SM00487 DEAD-like helicases superfamily CH54_607 SM00491 CH54_607 CH54_61 SM00450 Rhodanese Homology Domain CH54_616 SM00257 Lysin motif CH54_618 SM00382 ATPases associated with a variety of cellular activities CH54_621 SM00382 ATPases associated with a variety of cellular activities CH54_622 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CH54_635 SM00836 DALR anticodon binding domain CH54_635 SM01016 Arginyl tRNA synthetase N terminal dom CH54_64 SM00421 helix_turn_helix, Lux Regulon CH54_643 SM00481 DNA polymerase alpha chain like domain CH54_655 SM00937 CH54_655 CH54_659 SM01400 CH54_659 CH54_665 SM00257 Lysin motif CH54_669 SM00382 ATPases associated with a variety of cellular activities CH54_673 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_673 SM00866 CH54_673 CH54_682 SM00345 helix_turn_helix gluconate operon transcriptional repressor CH54_686 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_686 SM00387 Histidine kinase-like ATPases CH54_7 SM00825 Beta-ketoacyl synthase CH54_70 SM00316 Ribosomal protein S1-like RNA-binding domain CH54_704 SM00382 ATPases associated with a variety of cellular activities CH54_71 SM00363 S4 RNA-binding domain CH54_715 SM01007 Class II Aldolase and Adducin N-terminal domain CH54_717 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_717 SM01134 CH54_717 CH54_718 SM00387 Histidine kinase-like ATPases CH54_719 SM00448 cheY-homologous receiver domain CH54_729 SM00465 GIY-YIG type nucleases (URI domain) CH54_730 SM00421 helix_turn_helix, Lux Regulon CH54_730 SM00448 cheY-homologous receiver domain CH54_733 SM00642 Alpha-amylase domain CH54_744 SM00612 CH54_744 CH54_745 SM00530 Helix-turn-helix XRE-family like proteins CH54_747 SM00421 helix_turn_helix, Lux Regulon CH54_758 SM00382 ATPases associated with a variety of cellular activities CH54_760 SM00062 Bacterial periplasmic substrate-binding proteins CH54_760 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CH54_768 SM00342 helix_turn_helix, arabinose operon control protein CH54_769 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CH54_77 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CH54_770 SM00478 endonuclease III CH54_776 SM00382 ATPases associated with a variety of cellular activities CH54_78 SM00822 CH54_78 CH54_788 SM00047 Lysozyme subfamily 2 CH54_797 SM00858 CH54_797 CH54_80 SM00825 Beta-ketoacyl synthase CH54_806 SM00448 cheY-homologous receiver domain CH54_807 SM00448 cheY-homologous receiver domain CH54_808 SM00138 Methyltransferase, chemotaxis proteins CH54_809 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_809 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_809 SM00319 Homologues of the ligand binding domain of Tar CH54_810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_810 SM00319 Homologues of the ligand binding domain of Tar CH54_811 SM00260 Two component signalling adaptor domain CH54_812 SM00073 Histidine Phosphotransfer domain CH54_812 SM00260 Two component signalling adaptor domain CH54_812 SM00387 Histidine kinase-like ATPases CH54_812 SM01231 CH54_812 CH54_819 SM00831 Cation transporter/ATPase, N-terminus CH54_821 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CH54_821 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CH54_823 SM00357 Cold shock protein domain CH54_824 SM00354 helix_turn _helix lactose operon repressor CH54_825 SM01038 Beta galactosidase small chain CH54_826 SM00829 Enoylreductase CH54_828 SM00344 helix_turn_helix ASNC type CH54_835 SM00195 Dual specificity phosphatase, catalytic domain CH54_837 SM00563 Phosphate acyltransferases CH54_863 SM00764 Citrate lyase ligase C-terminal domain CH54_864 SM00091 PAS domain CH54_864 SM00387 Histidine kinase-like ATPases CH54_865 SM00448 cheY-homologous receiver domain CH54_866 SM00421 helix_turn_helix, Lux Regulon CH54_866 SM00448 cheY-homologous receiver domain CH54_867 SM00387 Histidine kinase-like ATPases CH54_871 SM00382 ATPases associated with a variety of cellular activities CH54_874 SM00382 ATPases associated with a variety of cellular activities CH54_875 SM00382 ATPases associated with a variety of cellular activities CH54_876 SM00382 ATPases associated with a variety of cellular activities CH54_88 SM00382 ATPases associated with a variety of cellular activities CH54_881 SM00342 helix_turn_helix, arabinose operon control protein CH54_885 SM00824 Thioesterase CH54_889 SM00823 Phosphopantetheine attachment site CH54_892 SM00829 Enoylreductase CH54_895 SM00421 helix_turn_helix, Lux Regulon CH54_895 SM00448 cheY-homologous receiver domain CH54_896 SM00062 Bacterial periplasmic substrate-binding proteins CH54_896 SM00387 Histidine kinase-like ATPases CH54_896 SM00388 His Kinase A (phosphoacceptor) domain CH54_896 SM00448 cheY-homologous receiver domain CH54_903 SM00260 Two component signalling adaptor domain CH54_903 SM00448 cheY-homologous receiver domain CH54_907 SM00420 helix_turn_helix, Deoxyribose operon repressor CH54_907 SM01134 CH54_907 CH54_918 SM00855 Phosphoglycerate mutase family CH54_922 SM00382 ATPases associated with a variety of cellular activities CH54_938 SM00342 helix_turn_helix, arabinose operon control protein CH54_941 SM00877 CH54_941 CH54_942 SM00877 CH54_942 CH54_948 SM00877 CH54_948 CH54_949 SM00877 CH54_949 CH54_957 SM00877 CH54_957 CH54_958 SM00877 CH54_958 CH54_965 SM00382 ATPases associated with a variety of cellular activities CH54_975 SM00382 ATPases associated with a variety of cellular activities CH54_986 SM01350 CH54_986 CH54_989 SM01091 Transporter associated domain